LOCUS       DATAAS010000001         4603 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1620142, whole genome shotgun sequence.
ACCESSION   DATAAS010000001 DATAAS010000000
VERSION     DATAAS010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4603)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4603)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4603
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1620142"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1140
                     /locus_tag="VHF08_00005"
     CDS             <1..1140
                     /locus_tag="VHF08_00005"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEX2067065.1"
                     /translation="INDPSLMAEIVVEELSSPTSMAFMDSNNILVLEKTGSVRLISNG
                     ILQEQPVLNVPVDTESERGLLGIATLEDDNTVFLYFTESGETLRNRVYRYNWNGETLV
                     NPTLILDLPAIPGPNHDGGKLVIGPDQYLYAIIGDLNHDGKLQNFLDGPEPDDTGVIF
                     KVNPNDGSAAPNNPFVNSGDSVLSRYYAYGIRNSFGIAIDPLTNMLWDTENGPGEYDE
                     VNLVRPGFNSGWQTVMGPISRSGESVDDLVSFQGSQYIDPVFSWQITPAVTDIEFLHS
                     QKLGDKYANNIFVGDYNNGNIYYFEINEDRNGIKFDASQTDLIDLVADNEEESSTIIF
                     GSGFGSITDIATGPDGFLYILSYDDGIIYRIAPSSTNQVAASVIS"
     gene            1920..3287
                     /locus_tag="VHF08_00010"
     CDS             1920..3287
                     /locus_tag="VHF08_00010"
                     /inference="COORDINATES: protein motif:HMM:NF020078.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA(Ile)(2)-agmatinylcytidine synthase"
                     /protein_id="HEX2067066.1"
                     /translation="MTASTAGTNQVLHIGFDDTDSLKGRCTTQLAFKITDYLLREEKA
                     DFLDYPLLIRLNPNIPWKTRGNGAVCLRVKAKNHEKIIENIKQLVEDGSSIDSGANPG
                     LAFYDGEQVPQAIQEFSMIAMYDILSKQKAENLAKKYGIRYFTFGNGQGLIGSLGAIG
                     SLLNSDHTFEVIAYRRPENCGTRRLVDVSKVIEYSKYTFPNTFNSYDQYHRRILITPH
                     GPDPVFCGIRGENPEVVVYSLERLGLEEKLDGYMVFRSNQGTDMHLTNQLNLSKVKAH
                     MAGHVQCNIKTKPLTIQGGHVLFMVEDFTGTIFPAAIYEPTCLTNIASQLEIGDLVKI
                     GCGVRKATSRHAKILNVEYLSILKLVQTYDISNPLCKDCGKRMKSEGKNKGFQCNRCG
                     YKDSDAEKVYVARDRNIEIGLYLPAPKSHRHLTKPINRYGMEKKYPSFNSESKLFVKW
                     FYLVT"
     gene            complement(3854..3981)
                     /locus_tag="VHF08_00015"
     tRNA            complement(join(3854..3938,3963..3981))
                     /locus_tag="VHF08_00015"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3920..3922),aa:Met,seq:cat)
BASE COUNT         1650 a          682 c          863 g         1408 t
ORIGIN      
        1 atcaacgatc ctagcctaat ggcagagata gttgttgagg aattatcttc tcctacaagt
       61 atggcattta tggatagtaa taacatttta gttttggaaa agactggctc agtacgtctt
      121 atttcaaatg gtattttaca agaacaacca gtgctgaatg taccggttga tacagaaagt
      181 gagcgtggat tattaggaat tgctactcta gaagatgata atactgtatt cctttatttt
      241 actgaaagcg gtgaaacgtt aagaaataga gtatatcgat ataattggaa tggagaaacg
      301 ctagtcaatc ctactttaat tttagatctt cctgcaatac caggcccaaa tcatgatgga
      361 ggaaaattag taataggacc tgatcaatat ctttatgcaa taataggtga tctgaatcat
      421 gatggcaagc ttcagaactt tctagatggg ccagagccgg atgatactgg agtcatattc
      481 aaagtaaatc ctaatgatgg ttcagcagct cccaacaacc cttttgtaaa tagtggcgac
      541 agtgtactaa gtagatatta tgcatacggt atcagaaata gtttcggaat agcaatagat
      601 ccccttacaa atatgttatg ggacactgaa aatggaccag gtgagtatga tgaagttaat
      661 ctggtcagac caggttttaa tagtggatgg caaacagtta tgggtcctat ttctagaagt
      721 ggcgaatccg tagatgattt ggtaagtttc caagggtcgc agtatattga tcctgtattc
      781 agctggcaaa ttacacctgc agttacagac atagagttcc tacattccca aaaacttgga
      841 gataaatatg caaataacat tttcgttggc gactacaaca atggtaatat atattatttt
      901 gaaattaacg aagacaggaa tgggataaaa tttgacgcga gtcaaacaga tctaattgat
      961 cttgtagctg ataatgaaga ggaatcatct acaattattt ttggatctgg ctttggtagt
     1021 ataacggata tagcaacagg tccagatggg tttttgtata tcttgtcata tgatgatggt
     1081 ataatttata gaatagcccc atcatcaact aatcaagttg cagcatcagt aatctcataa
     1141 gtagtatcta gaagaaaaag aaaaagaaga atacccaatg ttcccgatat gtatctcaaa
     1201 tgcctttatt atagcagctt tgaaagcatt tgttacagca aacttatatt tttgcttcta
     1261 cagcgatgca gaacactaaa cacagacaaa aatgacaaga cgaagaaatt cagtcatggt
     1321 aataatgaat gttattagaa taactataca ttactcattc tgcgatcgta ttgtatagat
     1381 gattaatgat taaattgatt tttctatcta cgaaataaag gagatcaact tcgatcataa
     1441 taatattgaa cacaacagta tattgctaga aaagtgcgtg taaataatta tatttaacat
     1501 tgacaaatca tgcaatctgt gtggtcataa agttataata ttggtgatgg gtaacttgct
     1561 tcttcaatca tagaatttaa taactatgat tgaaggatct gcgcttgttg ttgacggttt
     1621 gcttttttca gtatcttgag tttttctgtt tgtttagtgg aataaagaag aataatttat
     1681 gacaagaatt atgtcagagc cttttaattc ttttggtgtt gatgataaag taacttaaat
     1741 ttcaataaat caaagatgga agtcccttgg aacatttgat atactaaaat atctttgaag
     1801 gcaagaataa aaaatgtact tagcaattaa catattaaca tattgataat aaatattata
     1861 gaattagcca tttatagctt atagttaata tttgtaggat gctttgatta tttaatatta
     1921 tgactgccag tactgctggg acgaatcagg ttttacacat cggatttgat gataccgact
     1981 ccttgaaagg aagatgcact acgcaattgg catttaaaat tacagactat ttgttgagag
     2041 aggaaaaagc agactttctt gattatcctc tgttgattag attaaaccca aacattccct
     2101 ggaaaacccg tggtaacggt gctgtttgtc ttagagttaa ggcaaaaaat catgagaaaa
     2161 ttatcgaaaa cataaaacaa cttgtagagg atggatcatc aatagactca ggagcaaatc
     2221 ctggtcttgc attttatgat ggagaacagg tcccacaagc tatacaggaa tttagtatga
     2281 ttgctatgta tgatatttta agtaaacaaa aagcagaaaa tctggcaaaa aaatatggaa
     2341 ttcggtattt cacttttgga aacggtcaag gtttaatagg ctcactaggt gcgatcggta
     2401 gtttgttaaa tagcgaccat acatttgaag taatagcata cagaagacca gaaaattgtg
     2461 ggactcgcag gttagtagat gtctccaaag taatcgagta tagcaaatac acatttccta
     2521 ataccttcaa cagttatgat caatatcaca gacgcatatt aattactccg catggaccag
     2581 atcctgtttt ctgtggtata aggggtgaaa atccagaagt ggttgtttac tcattagaga
     2641 gattaggact agaggaaaaa ttggatggat atatggtctt ccgatcgaac caaggaacag
     2701 atatgcattt gacaaatcag ttaaatctat caaaggttaa agcccacatg gcaggtcatg
     2761 ttcaatgcaa tataaaaacg aaacctctta cgatccaagg agggcatgtc ttgtttatgg
     2821 ttgaggattt tactggcact atttttcctg cggcaatata tgagccaacg tgtttaacaa
     2881 acattgcatc acagttggaa ataggcgatt tagttaaaat tggatgcgga gtcagaaagg
     2941 caacatcccg acatgcaaaa attttgaatg tagagtatct ttctatcttg aaactagtcc
     3001 aaacttatga tatatccaat cctttatgta aggattgtgg aaagcgaatg aaatccgagg
     3061 gaaagaataa aggatttcaa tgtaatagat gtggatataa agatagtgat gcagagaaag
     3121 tctatgtagc aagagatagg aacatcgaaa ttggacttta tcttccggct ccaaaatccc
     3181 ataggcattt aaccaagcct atcaataggt atggaatgga gaagaaatac ccaagtttta
     3241 actcagaatc aaagttattt gttaaatggt tttatttagt cacataatag aaccagaata
     3301 ttctatactc taattatata tatgatcaat atcattagta atgatatata tatatgtata
     3361 tatatgtata tctttgaaac caatatacaa gaagtcatgt atattgacgg agttgatcga
     3421 attacataga aatatttgac cttaagaaac cagcggtatc agagtttctt taattgctaa
     3481 aaatggctct atacagttgg aatacggata agattacaat ctttaatcca acaaaaaagc
     3541 aatgtaaatt tgttcagaac cacataaact aatttagctt gaagttagtc tagacattaa
     3601 atatatcgat catgcgctat tagactaaac attctgactg aagagaagaa tataagaaga
     3661 tgataatata caaaaagtag tttagcccac ttataaaaag aataacaaat atcgaatgta
     3721 ttattaaaaa tcttccgtct acgaaagtag acagacaaaa ttagggaaat tatatagtgt
     3781 taaaaggaaa gcataagaaa gattttggaa tacattgtaa aataacccaa atacatagta
     3841 tttttaaaag taatagcggg gggttgattt gaacatacgg ccatttgctt tcggcaagat
     3901 ggaaaccgct ctgcgggtta tgagcccgcc gggattactt agcctctctt tttcagagat
     3961 aactggcttc cccaccccgc tgacagcatc tctgcacaag ggaaatatat ctctgtctct
     4021 ttatagagat ttgacagatg tggttagttt agtaaaatca atggcaagat gcataaccga
     4081 accataactt tcaactagta tgtcagggat ccttccattc atattctaat atgtcaaata
     4141 tgaagatttg tgatgcatga tctaaagagc gtaaaaaata tcctgatatg caatactgca
     4201 aataatgcct acgaagtata tctgctagtg aatgtcataa aaatgagtag ttaagtacca
     4261 tcataatcat tatcatatat gcattttttc tttaatgaat ataaattaca agttattgaa
     4321 tgtataaaat caaaataatg tcgctattaa gagagcctaa aataggcatt gacactcaag
     4381 gatttagaat taaaaattag taaacaacaa tcaggtaata taacaaacca gaaatttttg
     4441 aagttgcaaa acctcaattt ttagttaaaa tgtggatagt ataaaaaacg atataacaga
     4501 agatgttagg cgttgaacta ggtcattatt gcaaacagat agatagcgtt gtctcttatt
     4561 ttatcattaa ccaattgaag taacttcatc agagtgaact ctt
//
LOCUS       DATAAS010000002         2415 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_266, whole genome shotgun sequence.
ACCESSION   DATAAS010000002 DATAAS010000000
VERSION     DATAAS010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2415
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_266"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..210)
                     /locus_tag="VHF08_00020"
     CDS             complement(<1..210)
                     /locus_tag="VHF08_00020"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter"
                     /protein_id="HEX2067067.1"
                     /translation="MNPNKYKNNSIMIGYISALVAAILFGSVSTMGKTALATIDPLLL
                     SSLVYLISAATLTPLAHRTKFTFKKK"
     gene            422..1396
                     /locus_tag="VHF08_00025"
     CDS             422..1396
                     /locus_tag="VHF08_00025"
                     /EC_number="2.5.1.46"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyhypusine synthase"
                     /protein_id="HEX2067068.1"
                     /translation="MTIQRRKKIKSNFLNNDIKDYSIETTSISTILNSMADSGGFESR
                     NLSDGVNILQRMQNDSRCTKFLSFVGALISTGARGIIRDMLRNQMFDCIITTCGALDH
                     DIARTYDKYYAGDFRMDDSILLKKKIHRLGNVLVPMNSYGPLVEEKVQTCLQDMYSNE
                     SKREVSTYEITDHIGSMLDESSFLYWAHKNNIPVIIPGIVDGAVGSQIWFFSQHHNDF
                     KINILRDETMLSDLVYEAKKSGAFMIGGGISKHHTLWWNQFRGGLDYAVYITTASEWD
                     GSLSGALISEAISWSKVRTRAKQTTIHGEATILLPFIYAALLESKKKT"
     gene            complement(2231..>2415)
                     /locus_tag="VHF08_00030"
     CDS             complement(2231..>2415)
                     /locus_tag="VHF08_00030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067069.1"
                     /translation="RTDEPGLVFGVLLYEVNDDYTPKTTTTDLSVKNNLENPSSLSEQ
                     GDGNSTTSTAAVDSPT"
BASE COUNT          801 a          371 c          434 g          809 t
ORIGIN      
        1 ttttttttta aatgtaaatt ttgttctatg ggctaatggc gtcaatgtag ctgcagatat
       61 caaataaact agagaggaga gcaagagtgg atcaattgta gctaatgctg tttttcccat
      121 tgtagatact gagccaaaaa ggattgcagc cacaagtgct gaaatgtatc caatcattat
      181 ggaattattt ttatacttat tgggattcaa tttcaactca gcaatctttt attctttaaa
      241 tggcatttaa aagattgaac aaactctaat agcgcgaagt aataagacat tctacaacaa
      301 cacagacaaa gacgctatat aacttgagaa taagtaattg catatggcta atttaggcat
      361 ttctaagatg taaattcgct agcaatatat tttatactat agtggataac aatactgctt
      421 tatgactatt caaagaagga aaaaaataaa aagcaatttt ttgaacaacg atattaaaga
      481 ttattcaata gaaacaacta gcattagcac aatattgaac agtatggcag actctggcgg
      541 ttttgaatca agaaatcttt ctgatggtgt taatattcta caaagaatgc aaaatgattc
      601 aaggtgtaca aaatttcttt ccttcgtagg tgctctaatt tctacaggtg ctaggggaat
      661 tatacgtgat atgctacgaa atcaaatgtt cgattgcata attactacat gtggcgctct
      721 tgatcacgac attgcaagga cgtatgataa atattatgcg ggtgacttta gaatggatga
      781 ttctatactc ttgaagaaaa aaattcaccg cctaggcaat gtacttgttc caatgaatag
      841 ctatggtcct cttgttgaag aaaaggtaca gacttgccta caggatatgt acagtaatga
      901 gagtaaacgt gaggtttcca cttatgaaat aacagaccat attgggagta tgcttgatga
      961 atcatcattt ttgtattggg cacataaaaa caatattcct gttataattc cgggaatagt
     1021 ggatggtgca gttgggagtc agatctggtt ctttagtcaa catcacaatg attttaagat
     1081 taatattcta agagatgaaa caatgttgtc cgatctcgtc tatgaagcca aaaaatctgg
     1141 ggcatttatg attggaggcg gcatttcaaa acatcatact ttatggtgga atcaatttag
     1201 aggtggattg gattatgcag tatacattac aactgcatca gaatgggatg ggagcttgag
     1261 cggcgccctc atatcagagg ccatttcatg gagcaaggta agaacaaggg ctaagcagac
     1321 aactatccat ggcgaagcaa ctatcctatt gccgtttatc tatgccgctt tattagaatc
     1381 caagaagaaa acataaccaa gttgtctttt ttagaacaag attatattga ttatcacaaa
     1441 ttatcctatt atgagagctg tatagattaa ttcaaatgat aattaattat aattataatt
     1501 agataaattg aaaagcaaac cattgtcatc aatccaaatc tgacaactct tattatttga
     1561 tagaatatat ttaagataca aaataagaaa tttacttctt ggttaaaagc taatgaactt
     1621 gttgtatctg attactgtct acctggcttt tttgtttgcc atgacttaat ttattgaaaa
     1681 atatatttca ataaaatttt aattgctcaa aaatgtatct ctttgatatt aggaatagta
     1741 tattggagag ataaatggcc ctctattgat agttcatttt acatgtatat cattatgata
     1801 atgaaataac tagaaggagc atttgatatg gtgccactgt tctattttaa acttaaacat
     1861 aaataaaaaa ataaagcatt tgtctgcgcg atgactatca tttatactaa tagattgaat
     1921 tcttgctgct tctaattctg ccggttgact attctgaacc gttggtaagg tttctatttt
     1981 atctactacg tccatatctt ctataactcg accgaatacc gtatattggt tatttagaaa
     2041 atcgaactat tttgccttat atttggatgt ccgcctttat aacaaaatcc ttatcaattc
     2101 tatgaagagt cccattgtaa aatcctcctt gtgagagttt tttgaagctt tgtacatgtt
     2161 tgggtgctgc attaggaaag aattacatct tgatatttct ctacgtagtg ttaattactg
     2221 cgatctcttt tcatgtaggt gaatcaactg ctgcagtaga agtagtagaa tttccatcgc
     2281 cttgttcgga taacgaacta ggattctcca gattattttt taccgataaa tctgtcgtag
     2341 ttgtttttgg agtgtaatca tcatttacct catagagtag aactccaaag acaagacctg
     2401 gctcgtctgt tctga
//
LOCUS       DATAAS010000003         4013 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1317, whole genome shotgun sequence.
ACCESSION   DATAAS010000003 DATAAS010000000
VERSION     DATAAS010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4013
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1317"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            96..245
                     /locus_tag="VHF08_00035"
     CDS             96..245
                     /locus_tag="VHF08_00035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067070.1"
                     /translation="MERRENDLLDGGDGANYFDCGDSLDVIVYYDPSKGDTHTNSCED
                     VREHL"
     gene            complement(358..1320)
                     /gene="argF"
                     /locus_tag="VHF08_00040"
     CDS             complement(358..1320)
                     /gene="argF"
                     /locus_tag="VHF08_00040"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004585 - ornithine carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEX2067071.1"
                     /translation="MKTSLYNKDILSLQDLSSEEIFSILRLSGDLKNELKNGDGEKAS
                     QLLKGKVLGMIFQKPSTRTRVSFETGIFQLGGNALYLSTNDMQLSRGESIEDTGKTLS
                     LYVNCIIARVYEHADLQILANSASIPVINGLSNTFHPCQILADLLTIQEHKKKMKGLN
                     LAWIGDGNNVCNDLLLGCAKTGINMTAACPHGYEPFEQIVRLAKEEEQKTGVKITITD
                     DPLQATKDADIIVTDTFLSIGKDQEKTTREEAFLPRYQVNSDLLKNAKRDVIFMHCLP
                     AKRGQEVTSEVIDGSASVIWDEAENRLHVQKALMCMLMLKKRKK"
     gene            complement(1511..2827)
                     /gene="ftsY"
                     /locus_tag="VHF08_00045"
     CDS             complement(1511..2827)
                     /gene="ftsY"
                     /locus_tag="VHF08_00045"
                     /inference="COORDINATES: protein motif:HMM:TIGR00064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEX2067072.1"
                     /translation="MFDKLRKAFSSAAKTIAQKELSEKDLDNNLFDLQLALLESDVAQ
                     EVIDDLSTRLKKELLGLKLERGQVAEDIIRSKLHNAIDEMLARCGKIDLIERIKEKRE
                     TKRGPFVIVFLGINGTGKTTTVAKISNLLRKNGISVVLAAGDTHRAGAIEQLSQHAKK
                     LSLKIIMQRYGSDPSAVARDAVEYSGKHHVDAVLIDTAGRMQTAKNLMDEISKIVRVS
                     KPDLKLFIGDSLAGNDTINQAREFFHYTNFDGAILTKADADSKGGAALSIAYITSKPI
                     VYLGVGQGYEDIIPFNPAKFLESIFSNAPIIDVETLRRSTFTDAPTASESITEISPLP
                     SSIESEVTTIPNIINESETPPISAPATQTKDIKKERMPIDKNSAEESIIQASIPSSPS
                     YSPPAVKEEEVDKPAKKEEKKISRFSRLFGRKDKDKEKITEKSDEE"
     gene            complement(2841..3377)
                     /gene="pfdA"
                     /locus_tag="VHF08_00050"
     CDS             complement(2841..3377)
                     /gene="pfdA"
                     /locus_tag="VHF08_00050"
                     /inference="COORDINATES: protein motif:HMM:TIGR00293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prefoldin subunit alpha"
                     /protein_id="HEX2067073.1"
                     /translation="MTDELRNQQQAASIEQKINELVQQSRVLEAYMNDNISREATVTR
                     LLEEARLASNAIQNVPTDSEVESFMPVGIGVYIKALVPPVKKLLINIGADVTIEKSKE
                     DAINYIESKIKEFEVALRQLVSQKEQISMRMEQIQRQVNQMLQKGGSSATGTSGDGSQ
                     ASHHTQQRSRDTGQQHTH"
BASE COUNT         1113 a          756 c          653 g         1491 t
ORIGIN      
        1 tgatgaacta tatgctggaa aaggagatga cgttattttc gcaggatttg atgatacttt
       61 ttagtagctg gagaaggtaa tgatggatga actttatgga gaggagggaa aatgatctgc
      121 ttgacggtgg agatggtgca aattactttg actgtggaga tagtcttgat gtgatagtat
      181 actatgatcc aagtaaaggt gatacacaca cgaacagctg tgaagatgta agagaacatc
      241 tgtaaactaa caataacctt tcttatttgc tcacttattc attttaaaac ttttacaaat
      301 tatttctagt tatttgcaat aataatatta tatttgctaa ttataccatt taaaatatta
      361 tttctttctc ttctttagca tcaacatgca cattagagct ttttgaacat gtaatctgtt
      421 ctctgcctca tcccatatta ctgatgcact cccatctatc acctccgagg taacttcttg
      481 gccacgtttt gcaggaagac aatgcataaa tatcacatcc ctttttgcat tttttaaaag
      541 atctgaattt acctgatatc tcggaagaaa agcttcttct ctagtagtct tttcttgatc
      601 ttttcctatt gacaggaatg tatcagttac tataatatct gcatccttgg tagcctggag
      661 cggatcatca gtaatagtta ttttgactcc ggttttttgt tcttcctctt tagccagtct
      721 tactatttgt tcaaaaggtt cataaccatg tggacaggcc gctgtcatat tgatgcctgt
      781 ttttgcacaa cctaacaaca agtcattaca tacgttattc ccatccccaa tccatgcaag
      841 atttaatcct ttcatttttt tcttgtgttc ttgaattgtt agtagatctg caagtatttg
      901 acatgggtgg aaagtattag aaaggccatt tataacagga atagaagcag agttagctaa
      961 tatctgtaga tcagcatgct cataaacacg agctataata caattgacat agagagataa
     1021 tgttttacca gtatcctcta ttgattcgcc gcgggataac tgcatatcat tagtactgag
     1081 atataatgca tttccaccaa gttgaaagat gcccgtctca aaacttactc tagttctagt
     1141 cgaaggcttt tggaaaatca ttccaagtac tttgcccttt aataattgac ttgctttttc
     1201 tccatctcca ttcttgagtt cattttttaa atcaccagat aatcttagaa ttgaaaaaat
     1261 ttcctctgaa ctcagatctt gtaggctaag aatatctttg ttatataagg aagtcttcat
     1321 tgtctttgtc tagagtaaaa ctaacatatc tttctcttct tttccctttt cttttttaat
     1381 attgtcttct gcatcagtaa cattgtattt atcttctctc tctgttattt ttagatattc
     1441 tttaagttca ttgtttgtag taattcaatt cttcgttatt ttgctactat agattgctgt
     1501 aacctctctc ctactcttca tcactcttct ctgttatctt ctctttgtct ttgtcctttc
     1561 gaccgaacaa tctactgaag cggctgatct tcttctcttc tttcttagct ggtttatcta
     1621 cttcctcttc ttttactgca ggcggagaat aggaaggaga agaaggaatg cttgcctgta
     1681 ttatgctttc ttctgcagaa tttttgtcta taggcattct ttctttttta atatcttttg
     1741 tttgcgttgc tggagcagat ataggcggtg tttctgactc attgattatg tttggtattg
     1801 ttgttacttc cgattctata ctggatggta atggtgaaat ctctgtgatt gattcagaag
     1861 cggtcggtgc atcagtaaaa gtagatcttc ttaaagtctc tacgtcaatt attggagcat
     1921 tactaaatat agattcaagg aacttggcag gattaaaggg aattatgtcc tcatatccct
     1981 gaccgactcc aagatagaca ataggtttgg atgtaatata tgcaatagaa agtgctgcgc
     2041 caccctttga gtctgcatct gctttagtta aaatggcgcc atcaaaatta gtatagtgaa
     2101 aaaattctct tgcttgattg atggtatcat tcccagccag agaatcacct ataaataatt
     2161 tcagatccgg tttagatacc cttacaattt tactaatttc atccattaaa ttcttggcag
     2221 tctgcatcct acctgccgta tcaatcaata ccgcatcgac atgatgtttt ccactatact
     2281 ctactgcatc tcttgccact gctgaagggt ctgatccata tctttgcatg atgatcttta
     2341 acgataattt ttttgcatgc tggcttaact gttcaattgc acctgcacga tgagtatctc
     2401 ctgctgccaa aactacagaa atcccattct tacgtaacaa attagatatc tttgcgacag
     2461 tcgtagtttt acctgttcca ttgattccca aaaatacaat aacaaatggt ccgcgttttg
     2521 tttccctctt ttctttgatt ctctctatta gatctatctt tccacatctg gcaagcattt
     2581 catcaatagc attgtgaagc tttgacctga taatatcctc tgcaacctgt cctctttcca
     2641 gtttcaaacc taataattct tttttcagtc ttgtagaaag atcatcaatt acttcctgtg
     2701 caacatcgct ttctaacaat gcaagttgta agtcaaataa gttattgtcc agatcttttt
     2761 cagaaagctc tttttgagct atggttttgg ctgcacttga aaaggccttc ctgagcttat
     2821 caaacatata cttatttcgc ctaatgtgta tgttgttgtc cagtatcacg ggaacgttgt
     2881 tgggtatgat gtgacgcttg ggagccgtct ccagaagtac cagtcgcaga actaccgcct
     2941 ttttgtaaca tctggtttac ttgtcgttga atttgttcca tacgcattga tatttgttct
     3001 ttttggctaa caagctgcct taaggcaact tcaaattcct taattttaga ttcaatatag
     3061 ttaatagcat cttctttact tttttctata gtaacatctg cacctatatt tatcagcaat
     3121 tttttcactg gtggaactaa ggcttttata taaactccaa ttccaacggg cataaatgat
     3181 tcaacttcag aatcggttgg aacattttga atagcattag aagccagtcg tgcttcttcc
     3241 aataatcgtg ttacagtagc ctctcgacta atattatcat tcatgtaggc ctcaagaact
     3301 cgtgattgtt gaaccagttc attgattttc tgctctattg aggcagcctg ttgctgatta
     3361 cgtaattcat cggtcattaa aggtcaattt ccaaagctat cttataactg tgactaagta
     3421 aattatctta tgatagaaac ttatctccga atagtaaaaa aacattcagt ccttattaat
     3481 gttatagata tgggatacta ttatccttgt tatccactag tcagcgagtg attttaaaga
     3541 tacttttgaa tattacttct aacggtattc atggatagta tgaggtgctg aatactccct
     3601 cttctgtttt ctctggcaat aatataataa gaaaccattc tttgattgta aatcaattag
     3661 ttattttaat gatatctcct ttatgcaata ctggtgcttt tttccaatct ctctatttga
     3721 tttctcaatg tgccgactat tctattctat tatgtacact ttctattgtc agtaaaaaat
     3781 gatgaagtta tatatactat ttcctagttt tataatcgtt tactgttgtc ataatttatt
     3841 attagttagt tataatctct catagtggaa tattcctact ttactcttgt tgcttcaaaa
     3901 caggatccgg caagtatgac tatggctaat tacctgatac acgacaaaga tttttctgtg
     3961 tatgataaga agaataataa tgaggaatat acctcagaag tatataaaaa aat
//
LOCUS       DATAAS010000004         2917 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1472, whole genome shotgun sequence.
ACCESSION   DATAAS010000004 DATAAS010000000
VERSION     DATAAS010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2917)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2917)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2917
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1472"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(739..1305)
                     /locus_tag="VHF08_00055"
     CDS             complement(739..1305)
                     /locus_tag="VHF08_00055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067074.1"
                     /translation="MTTGKYFNRGVKALDSPHIGHVIRETDDLIVVFGGGDDRYDIPK
                     SDIQQVGANVLIGLPLHEIVKKYKVSRQEPLPTGKLIQDPWTQPENIDLATYEKKYPK
                     SLFNKGVRTKDEEHVGHIMKETDDKIVVFGHYDYRFDVPKSKIIAVGRNVILDMDYPE
                     IFNYRVERNAPLPTGEPIDALSAEEQKT"
     gene            complement(1565..2371)
                     /locus_tag="VHF08_00060"
     CDS             complement(1565..2371)
                     /locus_tag="VHF08_00060"
                     /inference="COORDINATES: protein motif:HMM:NF015763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067075.1"
                     /translation="MVLEIFYALLDHIFFIYQTLEESINTSAPIGILLLGIVTGLRHA
                     IEADHIAAVSMLIASDEKKKLRRAPFLGALWGLGHTASLFAAGLIVLILAINIPEKVS
                     NTLEFGVGVMLVYLAITTLTGFNIGKFVKGLLHHDKTHSHPHSHKQYDIIHTHEHNHY
                     HYEKEHQHGHKALLVGMVHGLAGSGALMLIVLSTIDSIPFGLAYITIFGAGSILGMMA
                     LSTIVGLPFAKVKRSAKLNFVLKYAAGVTTLMIGSWLIYELGVVEKIFLR"
BASE COUNT          940 a          527 c          460 g          990 t
ORIGIN      
        1 atttttttac attttgctta tctttttaat atgcagatag ttgctattgt aactagtatc
       61 gatattatag tcgatattat agttttaaaa aattaattct attatctact ctttcgataa
      121 caatcatcat tagcgatcat aaatctacta tacaaatcta acattagacg tcttagaaca
      181 aaattgacat tggtaaagtc cgagatgaag tatgctcgtc tcgagaattt tagtagttga
      241 tgtggaggtt ggcagggtaa agatgattag tatcggtggt taccacatga acagaggtgg
      301 atatattatt agaataatat atccattatc ataacagtaa cgtaccagcg acgaagaaaa
      361 attaaaagcc ctgctatctc agaagaagaa ttcattttct tagattcatg agttacctca
      421 ttctgtattc ataagacgtt ctttataata tgctgaggaa tctcatttac tagctctgtt
      481 cgctagttgg caacatatcc aaaaagaatt gcattctata agattatcta tttccctatt
      541 ggtaaatttg ttgaaaatat tctatcaagt ggatatatca aatactcttg tcactgctac
      601 gctagcttcg aagcaatgct ttagagtgag acgcctaagc tcaatacatt ccttcacttg
      661 tctgctttct aatggtttaa gaattgcact tttatctaga tgtaattagg cgttttacgg
      721 ttcttaacat acttaatttc atgttttttg ctcctcagcc gataacgcat caataggttc
      781 tccagttggt aatggtgcat ttctctctac cctatagttg aatatctcag gataatccat
      841 atctagaata acattccttc ctactgctat tatcttggat tttggaacat caaatctata
      901 gtcatagtga ccaaaaacaa ctatcttatc atcagtctcc ttcattatgt gtcctacgtg
      961 ttcttcatcc tttgtcctaa cacccttgtt aaataatgac tttggatatt ttttctcata
     1021 tgtagcaaga tctatattct ctggctgagt ccatggatct tgtattaact tacctgttgg
     1081 caaaggttct tgacgactta ccttgtactt ctttactatc tcatgtagag gaagaccaat
     1141 gagaacattt gcaccaacct gctgaatatc tgactttggt atatcgtatc tgtcgtctcc
     1201 acctccaaat actacaatta ggtcatctgt ttctcttata acatggccta tgtgagggga
     1261 gtctaatgct tttacacctc tgttaaaata tttgccagtg gtcatttatt atcactattt
     1321 tttaacataa aggataatat aagtaatttt tgttaaagga aaggaaaaga ttcttcttcc
     1381 tatcgtttgg gcaatgatca taaaagtctg aaaaatacat ttcaatgaat ttatattgtg
     1441 acttaatatt cttctcagca gtcaatagct catattgttt agaataacct acttaattca
     1501 ttactcacgg aggcatccca aaacgtcgat ttaaaatctt taggtcccgt tctacgtatt
     1561 ctcatcatct aagaaaaatt ttttctacta ctcccaattc ataaataagc cagctcccta
     1621 tcattagggt tgtaactcct gctgcatact ttaatacaaa attgagttta gcagatctct
     1681 tgacctttgc aaacggcaaa ccaacgattg tgctgagtgc catcataccc aaaattgaac
     1741 cggcgccgaa aattgtaata tatgcaagac caaaaggaat cgagtcgatt gttgatagaa
     1801 ctattaacat taatgctcca cttcccgcca agccatgtac catccctaca agcaatgcct
     1861 tatgtccatg ctgatgttct ttctcataat gatagtggtt atgttcatga gtatgaatga
     1921 tatcatattg tttatgcgaa tgaggatggc tatgtgtttt atcgtgatgt agcaaacctt
     1981 ttacgaattt tcctatatta aatcctgtta atgttgttat cgcaagatat actagcataa
     2041 ctccgacgcc aaattcaaga gtattgctta ctttttctgg gatattgatt gcgagaatta
     2101 atacaatcag tcctgcagca aacagcgatg ctgtatgtcc taatccccat aatgctccta
     2161 aaaatggagc tcgcctaagt ttctttttct catccgaggc aattagcata gaaacagctg
     2221 ctatatggtc tgcctctata gcatgacgta atcccgtaac aataccaaga agcaggatac
     2281 cgataggtgc tgaagtattg atactctcct ccagagtttg ataaataaaa aatatatgat
     2341 ctaataacgc ataaaatatt tctaaaacca aactctaaac tgttattgtt tctatagtat
     2401 taatttttta ataataacag atagtttaat actcacatag tatatgatct cgcaattaag
     2461 aagatattag ccccataggg tgtagtgaat gcattattgc aaaaaaaaga gcgataaaag
     2521 gtcatgtgat gctaagagtt gattagtcga catcgactaa attaattttg aatgtgagat
     2581 tatgtatcag tcaacaataa tagtaataac aactcagcta actacgcagc aacaggtttg
     2641 ctcactaaca acatatcaga aatgattgaa tattaaaaga agacagacaa gtaggagttt
     2701 tattaataca atattttatt tgtgttctta ccaaaaagta atacactatc tagaggagat
     2761 aatgaatgaa acgcttagaa agaattaatg ttataacaat aaaccgcctt tcttataatc
     2821 aaataataca atgaaaaatc attctcccgt gaaagggaaa gaatgattta aatctatgcc
     2881 aacttattaa cgaggcttct tcttcttttg tgtcata
//
LOCUS       DATAAS010000005         2318 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4865359, whole genome shotgun sequence.
ACCESSION   DATAAS010000005 DATAAS010000000
VERSION     DATAAS010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4865359"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            194..355
                     /locus_tag="VHF08_00065"
     CDS             194..355
                     /locus_tag="VHF08_00065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067076.1"
                     /translation="MVEQQKTDITEESTTAAATKVNKKENKEGSIVETEKGRDQENAA
                     GAEIEDLNK"
     gene            complement(2087..>2318)
                     /locus_tag="VHF08_00070"
     CDS             complement(2087..>2318)
                     /locus_tag="VHF08_00070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067077.1"
                     /translation="ISIIDFKKSYHYKQISSKYNVKLRFVDFPLPGTMDIFKDRMLII
                     SWSTKTGILISSKEIADHFKEYFDSIWNIAER"
BASE COUNT          821 a          373 c          355 g          769 t
ORIGIN      
        1 ccatgccttt gcttatagac ggagaaaagg cttgataaaa tatatctcca atggctttaa
       61 gtattagata ggttcacaga tcataaatat ttttttacgt taacatcaag atatataaaa
      121 tataattccg gtttactgac aacaaaaaga attttataat acaatacctt gccaatcata
      181 tagaggatta aagttggtag agcaacaaaa aacagacata acagaagagt caacaactgc
      241 cgcagcaaca aaggtcaata aaaaggaaaa taaggagggt tcgatagtag aaacagaaaa
      301 aggtagagat caagaaaatg cagctggagc agaaatagaa gatctcaaca aatagaaata
      361 aaaatagacc atatcaattg ggattgtata gatgagtaga tgatgttgaa cagcgaacat
      421 attatctgcc attctgagat tcatacaaca gctaacataa tactccaata atcgcagtta
      481 tagcagcagc gtaatatggc gttctgctac tatggtcata ttcatcaatg agtaggcacc
      541 tacttttgaa cagttgctgc aaaaatattt cagaaaatga ttggtttacc tgatgtaaac
      601 tagacagaca ttaaaaaaaa aggtcttcat catacttctt cttagacaga ctgggtacgc
      661 ttaaagattt tataatggta aattttatga aaatgattac taatcctcca taaaacgact
      721 agtaactcca aaagactgct tttaatcgac taatcatact ttctgctacc caaatatcat
      781 attcataaac aatgatttag ttgaatcata acattatttt ttatttataa tatccttgtt
      841 ttattattat taacttaaca acctaaaaaa tttatagatt gtcttaaaat atatgtaagt
      901 ccacttaaat tattgaattt aattacacaa acaacacaga tctgcctaca ccagtgtaaa
      961 aaatgtggag tagtatatga ttgcagagat ggagtgaact gtataatgtc attccagtat
     1021 ggtaagtgtt ctttgtgtaa tggctaagaa gaaagacaac ttcgaagact attagtagtt
     1081 tgtcttattc tctattaatt aattgctaat agattagttt ttgatttata atcaaactag
     1141 tataagtcaa taaaagctca attctttgct atatccgata gacttagtat aacaagtata
     1201 actattaata aaaaaaagtt attgggaata tttcgactag gttccaccat ttatagtaca
     1261 ttaattaaaa acattttttg ttctgtctat gactagtaag ccttactaac caatagcttc
     1321 tttccattca taacacattt actgatgctg ctaatgtatg acgaattcta tgctcctata
     1381 aagcacgatc caacagcctt ttaacagcag tacttggaag ctttttggat caggtgtaag
     1441 atcccatttg gctccatagt tcatattgtt gtctggcata aatcacgcaa aagccaaaaa
     1501 tctcctgtta ttttttcatc ataagaagcc tgaaagtcta tctagtcttt aagtgcatcg
     1561 taagcctcct ctgacgttat gaagagataa cactccctgt ctaatcagca taaattaaca
     1621 gtttagctac tataacttct cctttttcat cggctttgga acaaacgtgt ttccaatgtg
     1681 aataatcaca agcacccatt ttaaatcgtc cagaagccat tgcatagact atagatgtta
     1741 tcgtctgtca ggacattcag taaatttagc tatatcttct aatgtaagag atctataatt
     1801 agataattct ttactcttga tagtcctttt gatatcctat tcctatttag tgtcaaatca
     1861 ttattttaca aaatagtttg gcagatctat tgtaatttta aggggtacca acatcaggtt
     1921 ctttacgtcg aactctttcc ttataataaa gggacaagag tgacacagat tcagtggatg
     1981 taatacagag ttggctctat tttatcactc agaggaagat agacagtagt attgataatc
     2041 atttagatat taaattattt tatatcatat ggttgaataa gatgctttat ctttcggcta
     2101 tattccagat actatcaaaa tattccttaa aatggtctgc tatctctttt gatgatatca
     2161 aaatacctgt cttagtcgac caagatatta tgagcatcct atctttgaag atatccattg
     2221 ttcctggaag agggaaatct acaaatctga gcttcacatt atattttgaa gagatttgtt
     2281 tataatgata tgatttctta aaatcaataa tgcttatt
//
LOCUS       DATAAS010000006         1644 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5456, whole genome shotgun sequence.
ACCESSION   DATAAS010000006 DATAAS010000000
VERSION     DATAAS010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1644
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5456"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            271..1251
                     /locus_tag="VHF08_00075"
     CDS             271..1251
                     /locus_tag="VHF08_00075"
                     /inference="COORDINATES: protein motif:HMM:NF012607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2067078.1"
                     /translation="MILSYAAGLTQILSGKLKEFGLTAERVDYNKPILTQITDADVLV
                     NGLGKVDKHIIDACPKLKLIHQVGTGFDNIDIGYCTQKSIYVANIPHVNYISVAEHTL
                     FLMIYLAKNMKNAGEGLMKRRVLNVLGSELYGKKLTIIGLGSTGVEVAKRAKAFGMYI
                     TAVTKHPNSKKGRRIDKNNNNNNNIRNYFVNIIQGVEALSDSLIDADYISIHTPLTDE
                     TRGLIGAKEINLMKSSAFLINVARAQIVDREGLFTSLVNKKIAGAAFDVFWEEPADPN
                     DKLLKLDNFVLTPHLAGWTSESADHATRIIASNINRILHGEKPSTVVNSD"
BASE COUNT          619 a          248 c          282 g          495 t
ORIGIN      
        1 gtaataatac tagagtatcg ggctgcttga tatgtgtatg gtggccaagg gatggaaata
       61 aagcggagat gaaggaaata caggaaggat aataagtatt atatctgaaa atactacaaa
      121 taaaattgag tataaaataa attcaaacta aaactataat aatttatccg aatcataagt
      181 tatgaaaact agtcttttca tgaccggacc ttattctcct acatataaat gagagaaact
      241 tggctatttt ttgttaataa tatgaaaata atgattttat cttatgctgc tggcttgacg
      301 caaattcttt caggcaagct aaaagaattt ggattgaccg cagaacgtgt tgattataat
      361 aaacccatct tgacacaaat tacagatgca gatgtacttg taaatggttt gggaaaagtg
      421 gataagcata taatagatgc ttgtccaaaa ttaaagctaa ttcatcaggt agggactgga
      481 tttgataata tagacattgg ttattgtacc caaaaatcca tttatgtagc aaatattcct
      541 catgttaact acatatcagt agcagaacat actttattcc tcatgatata ccttgcaaaa
      601 aatatgaaaa atgctggcga aggattgatg aagagaagag tactcaacgt attgggttca
      661 gaattatatg gaaagaaact tacaattata ggcctaggat ctacaggggt agaagtggca
      721 aaaagagcaa aagcttttgg catgtatatt actgcagtca ctaaacatcc taattcaaaa
      781 aaaggaagaa gaatagataa gaacaataac aacaataata acatacggaa ctattttgta
      841 aatataatac aaggagtaga agctctatca gattcactta ttgatgcaga ctatatttca
      901 atccatacgc cactaactga tgaaacaaga ggtttaatag gagcaaaaga aatcaatttg
      961 atgaaaagct ctgcattttt gataaatgta gccagagccc aaatagtgga tagagaggga
     1021 ctttttacat ctttggttaa taaaaaaatt gctggagctg cctttgatgt cttttgggaa
     1081 gagcctgcag atcctaatga taaattgcta aaacttgata attttgtttt aacaccacat
     1141 ttagcaggat ggacttctga atcagcagat catgcaacaa gaataattgc atcaaatatt
     1201 aataggattt tgcatggcga aaaaccgtcg acagttgtaa attcagacta attaactact
     1261 tttcataatc agaatatttt catttttaat aatgttttaa atttaacttc tagttacaag
     1321 tacagtccat catcatatag aaatacatat tcgcaatcat tatcagatcc aatcttctga
     1381 tcttttaact aactatgctt attctacttc caattgttgc tctatttgac gttgattcgg
     1441 aaccagacaa ctctctcctc ttcaataaaa aaagcaggaa tggaacttat gtattatccg
     1501 tcagcacaat aataacataa ggaactattt tgtaaatata atacaaggag tagaagctct
     1561 atcagattca cttattgatg cagactatat ttcaatccat acgccactaa ctgatgaaac
     1621 aagaggttta ataggagcaa aaga
//
LOCUS       DATAAS010000007         2422 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5816, whole genome shotgun sequence.
ACCESSION   DATAAS010000007 DATAAS010000000
VERSION     DATAAS010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2422)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2422)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2422
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5816"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            398..1849
                     /locus_tag="VHF08_00080"
     CDS             398..1849
                     /locus_tag="VHF08_00080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HEX2067079.1"
                     /translation="MPFESLGEYVEVLEKSGQLARIKKRVSAHLEIAEIMRRLMYAGN
                     QPAVLFEDVEGYDMPVLGNAFGTLTRLQIALEINNFEEIGGRIVDLTKMKMPAGMLNK
                     LKMIPKLSEIAQYGPKSVESGPVMEVIKTDNLTLNSIPILKSFSGDAGRFITFGLTVT
                     KHPETGIRNIGVYRIQVINDTKAIMHWQIHKRGAQHYEIMKEQMKRIEVAIVIGADPA
                     TVFSAVAPVPEGMDKFLFAGITRKKGIKLVKCKNVDLEVPANAEIVLEGYIDPNDIRI
                     EGPFGDHTGYYTPPEPYPTFTLTGIMRRNKPIYLTTVVGKPILEDAYIGKVIERSFLP
                     LIQMFQPEVVDFSMPPAGWFQGLAVISIRKRYPGQARKVMMGLWGMGQLSLTKIFAVV
                     DHDVNVHDMNEVIWAITTRADPKRDTMIIDNTPTDTLDPASPLVNLGSKMGIDATAKW
                     KEEGYLREPQQLVRVDEQTKRTVDNNWKEYGLS"
BASE COUNT          830 a          414 c          465 g          713 t
ORIGIN      
        1 attttttaga aagtacagta taatacatca actctcatat aaataatact acattgtttg
       61 aacatctaga gacagattag aaaaagatcg caataaagtc aatgctatgg cctttcgtat
      121 agatctgcta tacatacaat aagcaaatct gctcgtatga caagatcatc tatcatctag
      181 aactcttaaa gtataataac atgcagggcg tctgctttaa ctattacata caatcaacaa
      241 ggattctatt ctaaattaga atctaaaaaa attatatatg acttaattga tttggcttgc
      301 atcatctttg aattgaaata ctaggttaaa gtacatgtgt gaatatgtta atccctttta
      361 ggcaaggctt atctaacgtt gattaactat ctttgccatg ccattcgaaa gcctgggtga
      421 gtatgttgaa gtactagaaa aaagcggaca gttggcgaga ataaaaaaaa gagtaagcgc
      481 gcatttagaa attgcagaaa ttatgcgcag actaatgtat gctggcaatc aaccagcagt
      541 attatttgaa gatgtggaag gttatgacat gccagtgcta ggtaatgctt tcggaactct
      601 gacacgacta caaattgcat tagaaataaa taattttgaa gaaataggag gcagaattgt
      661 cgaccttaca aaaatgaaaa tgcctgcagg aatgctaaac aaacttaaga tgataccaaa
      721 actgtctgag atcgcccaat atggtccaaa aagcgtagag tcaggaccgg ttatggaagt
      781 cataaaaaca gataacttaa ctttaaattc gatacccatc ctaaaatctt tttccggcga
      841 tgcagggaga tttattacat ttggattaac agttacgaag catccagaaa caggaattcg
      901 aaatatagga gtgtatagaa ttcaagttat aaatgataca aaagcaataa tgcattggca
      961 aattcacaag cgcggagcac agcactacga aataatgaag gagcaaatga aacgcatcga
     1021 agtagcaata gtaataggcg ccgatccggc cacagttttc agtgcggtcg ctccagtccc
     1081 agaaggtatg gataagtttc tatttgcagg tataacgagg aagaaaggaa taaaacttgt
     1141 taaatgcaag aacgtcgact tggaagttcc tgctaatgca gaaattgtcc tggaaggcta
     1201 catagatcca aacgacatcc gtatagaagg tccttttggc gatcatacag gatattatac
     1261 acctcccgaa ccatatccta catttactct tactggcatc atgcgaagaa ataaaccaat
     1321 ttatctgaca actgttgttg gtaagccaat tttagaggac gcatatatag gaaaagttat
     1381 cgagcgatca ttcttgccac ttattcaaat gtttcagcca gaagtagtag atttttctat
     1441 gcctccagca ggatggttcc agggtcttgc tgtgatttca atcaggaaac gttatcctgg
     1501 ccaggcacga aaagttatga tgggtttatg ggggatgggt cagctatcac ttaccaagat
     1561 atttgccgtt gtggatcacg acgtaaatgt acatgacatg aatgaagtaa tatgggctat
     1621 tacaacaaga gcggatccta aaagagatac tatgataatt gataatacac caactgatac
     1681 tttggatcca gcttctccat tagttaacct tggttcaaag atggggatag atgcaactgc
     1741 aaaatggaaa gaagaaggat atctcagaga accccagcaa ctggttagag tcgatgagca
     1801 gacaaagagg actgttgaca ataattggaa agaatatggg ctatcttaac ttctatagat
     1861 aatagttagc ggatttgcta attcagaaga aaagcaaatt aagtcattat cggcaggaaa
     1921 gccatttatt gtatttgggc attagtccct tgtcatggaa tatattcact catattataa
     1981 aataaaaata ggtgcctgaa aagtagaact tctgattaaa tatattagga aaaagtgtct
     2041 gacagatatg atgaaagact tctataatta attttagaag tttttcaatt aattgtcaga
     2101 cacttttttt ctaatatatg ttttattaga aattctactt ttcaggcacc tctttttatt
     2161 ttataatttg cgtgaatata ttctacgatg agcggataat gccaaataca ataaatggat
     2221 ttcctgccgg caatgactca aaatttgctt ttcttctgaa tttatcagat ccgctaacta
     2281 ttatgtatag aagttaagat agcccatatt ctttccaatt attgtcaaca gtcctctttg
     2341 tctgctcatc gactctaacc agttgctggg gttctctgag atatccttct tctttccatt
     2401 ttgcagttgc atctatcccc at
//
LOCUS       DATAAS010000008         1506 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5870, whole genome shotgun sequence.
ACCESSION   DATAAS010000008 DATAAS010000000
VERSION     DATAAS010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5870"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(198..791)
                     /locus_tag="VHF08_00085"
     CDS             complement(198..791)
                     /locus_tag="VHF08_00085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067080.1"
                     /translation="MNFFRKFIKNTDNRKLQTDSDAIFSLSSTYISLETKLGLKSTGR
                     CAICVEKVSGSHFDELKQNIDSFLDSVKTDFELSYSTLIDKYDYLWIIIDAKRIEDIV
                     ACITAVGETIEERGFSDQLLSAVIEFSSDGIENPYYLIYNYKLDSFYPFVPTNTTINQ
                     RRRNNQAEMKIMGAVTDDKLPFEKDMTRWYPIWDLPL"
BASE COUNT          533 a          223 c          206 g          544 t
ORIGIN      
        1 tgtagaacgc gatttcaata tggtaaatgt tccttgtgtg aagggaaaat atgagagata
       61 aataactata tagaaaacat cttgtagtat aactcctatt agtatattat atattatttc
      121 taacacatta ttgttttgca aattgctgaa gacatcgatt ttttaatcaa gtattattct
      181 atatgattcc agaatattca aagaggtaga tcccaaatag gataccaacg agtcatatct
      241 ttttcaaatg gcaacttgtc atctgtaaca gcacccataa ttttcatctc tgcttgatta
      301 tttcttcttc tttgattaat agtagtatta gtaggaacaa aaggataaaa actatcaagt
      361 ttatagttat aaattaaata atacggattt tcgattccat cgctactaaa ttcaataact
      421 gctgataata actgatcaga aaaccctctt tcttctatag tctcgcctac tgcagttatg
      481 catgctacaa tatcctctat tcttttagca tctattatta tccaaagata atcatatttg
      541 tcaataagag tactataaga aagctcaaag tcagttttaa ctgaatcaag aaagctatca
      601 atattttgtt tcaattcatc aaaatggctt ccactaacct tttcgacaca aatagcacat
      661 cttccagtgc ttttcagacc taatttcgtt tccaagctaa tgtatgttga agataatgaa
      721 aaaattgcat ctgaatctgt ctgtagtttt ctattatcag tattctttat aaattttcta
      781 aaaaaattca attgggaata agacctcctg gttctttata ttattgctac tatgatataa
      841 tctatcaggt aatttattgt caagtagacc ttggttgtgt gtatatatat ctgtatatgg
      901 aattcattca caaataggta cttatatttc cttaaataca atttattaca caaattccca
      961 ttatattacc atagaagatc attaataaaa tcagatggat atatgcaata gatataaaat
     1021 tctatcactg ccaacaatta gcatgtttgc tatggattta aaataaaaaa actgattgct
     1081 agcatattta cattttgtaa ttaaaaatgc aggattgtga ggactacaat tttgttgagc
     1141 gagttatctt ggtatcttgt ctagaggggt caaaaatcag atcgatcttc tctaccatat
     1201 gtccatgaca aagactggtt cccatacctt tgctgtaata gaatatgata tgttaattaa
     1261 ttagattttc aaacacattt ttcaaagaaa agttttctcc attatcttca aatataggac
     1321 gaagatgagc gaaatgagaa aaatataaca acagatatat ttacaattgt aaatataata
     1381 tgttataatg acggcatatg tataatgcat tttgtttcat tttaattaga tatttcctta
     1441 atgatatgat catatttaag tagataagat tgttaatctc tcaagcatag gatgacagta
     1501 aaaaat
//
LOCUS       DATAAS010000009         1770 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_545888, whole genome shotgun sequence.
ACCESSION   DATAAS010000009 DATAAS010000000
VERSION     DATAAS010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1770)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1770
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_545888"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(313..1035)
                     /locus_tag="VHF08_00090"
     CDS             complement(313..1035)
                     /locus_tag="VHF08_00090"
                     /inference="COORDINATES: protein motif:HMM:NF017808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX2067081.1"
                     /translation="MKKKNNIVTVAVAAISIAIIVSGSFVSLASSQSQKPLPVLLIHG
                     YAEDAAIWKKWEDLLKKDGIQFFTITFTDSDDKCGSAEQHAKELEKRVQDVKQQSGAQ
                     KINIVGHSKGGLDARVFLDITDTKDVANLIMIGTPNAGSPAAETNDACAPAIFDLRPG
                     ANATRAEMNPNTKYYTITGDWLPAVQGNLAIPGHDDGLVPVESVESEGYFQSLGRTEH
                     AHAELLQEQEYNMAKDVLLGKR"
     gene            1181..>1770
                     /locus_tag="VHF08_00095"
     CDS             1181..>1770
                     /locus_tag="VHF08_00095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067082.1"
                     /translation="MKEKPHMINNKLMASILLALVIITFDPVSLITYAESQAPNTTSI
                     TIEDRIGMIMGNRITKMMDDTINMIKNVNSTVIVNQSENRITPVTNLTDVDVNKTEIR
                     STNELEKLAGNNIALTLDDISTDISNASMLEELEKSRTENATMDKQDTAAVFEGQNIS
                     STVNTTENTSHIDQKIINDNTGTNTTLYADNKTLATT"
BASE COUNT          591 a          320 c          284 g          575 t
ORIGIN      
        1 gataatcaat aatatatttt gatatttgta ttgttacatc gatttgttct ttgctcactg
       61 ttatttccct gctaacagga tgtgcaatgg ataattaaac taacgtattc acttctctgt
      121 caacaatgtc aacaataaca aatctacaga tctgtaaata gaaatacagc agatcacaca
      181 taaaagagga catattcact ttgtaattat tttccactca gtcaaatgtc tatcgagaca
      241 taattgtgta gaaacccaaa aaataaaata agagaatttt ttatttgatc atatccttac
      301 tgcctcagaa gtctatcttt tcccaagtaa tacatccttc gccatattat attcctgttc
      361 ttgtaatagt tctgcatgtg catgttctgt gcgacccaga ctttggaagt aaccttctga
      421 ttcaacactt tctacaggta ctaaaccatc gtcatgtcct ggaatagcta ggtttccttg
      481 tactgcaggt aaccagtcac cagtaatggt atagtatttg gtatttgggt tcatttctgc
      541 tctagttgca tttgctccag gtcttaaatc aaatatagct ggtgcacagg catcatttgt
      601 ctctgctgct ggagaaccgg cgttaggagt tccaatcatt ataagatttg caacatcctt
      661 tgtatcagta atatctaaga atactctagc atcgagtcca cctttactat gacctacaat
      721 gtttatcttt tgagcgcctg attgttgctt tacatcttgt actcttttct ctaattcctt
      781 ggcgtgttgt tctgctgatc cacatttgtc atcagagtct gtgaaggtta ttgtaaagaa
      841 ttgtatgcca tcttttttga gcaaatcttc ccattttttc catattgcgg catcctcagc
      901 ataaccatgt attaataata ctggaagtgg cttttgggat tgactacttg ctaaggaaac
      961 aaatgagcca cttactatta ttgctatgga tatagcagct acggcgactg tgactatatt
     1021 attttttttc ttcatcttat tgatagtggt tagaaagatt tatcaaagtt atttttaaat
     1081 aacagcattc taaaagggag tttatattct tcaccaactg tatagtttgc agtcgttaac
     1141 accttaggat gaacaaatga acaacattgc ttaataaaat atgaaagaaa aaccacacat
     1201 gataaataat aaactgatgg cttctatatt attagctttg gtcataataa cttttgaccc
     1261 tgtctcttta ataacatatg cagaaagtca agctcctaat accaccagta taactattga
     1321 agatagaatt ggaatgataa tgggtaacag aattactaag atgatggacg acacaataaa
     1381 tatgataaag aatgtcaata gcacggttat cgttaatcaa tctgaaaaca gaatcactcc
     1441 agtaacaaac cttacagatg ttgatgttaa taaaactgaa ataagaagta caaacgaatt
     1501 agaaaaatta gcaggaaaca atatcgcttt aactctagac gatattagta cagatatttc
     1561 caatgcttcc atgttagaag aattagaaaa atctcggaca gaaaatgcca ccatggataa
     1621 acaagataca gcagcggtct ttgaggggca gaatatttct tctacagtta atacaactga
     1681 aaacacatca catatcgatc agaagattat taatgataat acaggaacaa acacaacatt
     1741 atatgcagac aataaaacct tggctacaac
//
LOCUS       DATAAS010000010         2922 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_6207, whole genome shotgun sequence.
ACCESSION   DATAAS010000010 DATAAS010000000
VERSION     DATAAS010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2922
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_6207"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..507)
                     /locus_tag="VHF08_00100"
     CDS             complement(<1..507)
                     /locus_tag="VHF08_00100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067083.1"
                     /translation="MSIILSIDIINSSSNTLVESANAQSALDGLVAGRDEVFIAQNTS
                     MSAPAPVRHPGQPLHEVVFALPLRDDGKIWSGRVTFTASKPIEAEVLHIYNPQQPIDE
                     KHGEPYHAVLPGNRSVAISHLRDLVDVPIEINGTGISSGSFEFEGSALVFHKTSGEPF
                     TVTYTVNAV"
     gene            complement(654..824)
                     /locus_tag="VHF08_00105"
     CDS             complement(654..824)
                     /locus_tag="VHF08_00105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067084.1"
                     /translation="MFENVNDYVVAICLAWIIVIIYFIVITREVMLIFGIIFPVLIML
                     LKEHESKSTHRR"
     gene            1444..1647
                     /locus_tag="VHF08_00110"
     CDS             1444..1647
                     /locus_tag="VHF08_00110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067085.1"
                     /translation="MKSSIIVGLMSIVALAVVGAVGSLAAPVFAEDDGHDYKYLKCKK
                     YDKDYDKYDDGDYFKLKCKKYKD"
     gene            1851..2735
                     /locus_tag="VHF08_00115"
     CDS             1851..2735
                     /locus_tag="VHF08_00115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067086.1"
                     /translation="MINRKGASTIASGVIVAIALIVIIIAIFLFLFLGNGSLSNSSSS
                     SSSNDAIKNSSAPYIELKYDEWMIDPLNVHIIVNENTQEQSKKYLDDIIKAINKWSYL
                     LKEYSGSHDSWNFKITTSIDEPSQYSQFENDKHTHNIVIELVGELEGDECSSYFGYSD
                     REFSDTSPEISAKVFTSCPDDSNPYSKGNDLPHDLVYSTVSHEFGHMLGLGHAHNIDG
                     DLMCSIEEDEENGNSFESCYKDRAKMIEPSESDIKALIYKYKENGFKTPNRELELEDE
                     EGEEGEKQDEYKFKIEDS"
BASE COUNT         1034 a          439 c          490 g          959 t
ORIGIN      
        1 tactgcatta acggtatatg ttacagtaaa tggctctcca ctagttttgt gaaatactaa
       61 tgcgcttcct tcaaattcaa atgatcctga gctgatacct gtaccattga tttctatagg
      121 cacatctacc aagtctctca ggtgagaaat agcaacactt ctgttacctg gtaatacagc
      181 atggtatggt tcaccatgtt tttcgtctat gggctgttgt ggattgtata tatgtagtac
      241 ctctgcttca ataggtttac tggcagtaaa tgttactcta ccagaccaaa tttttccatc
      301 atctctaagt ggaagagcaa atactacttc atgtagaggt tgacctggat gcctgacagg
      361 agctggtgct gacattgaag tattttgtgc aataaagact tcgtctcttc cagcaactaa
      421 gccgtctaga gcgctttgag catttgcaga ttcaactagt gtattggatg agctattgat
      481 gatatctatt gaaaggataa tagacattgt taataagaat aggagaatta atggcttctt
      541 aatcaacatc attttttctt acatcttaat tctgagtggt aaataaaaac actgcgtgta
      601 cgatactcaa attgcttgta ataacaaaac aagaatatga caaaaaagat atgctatctt
      661 ctatgagttg acttactttc gtgttctttg agtaacatga tcaataccgg aaatattatt
      721 ccgaatatca gcattacttc tctagttatt actataaaat aaattattac tattatccat
      781 gcgaggcata ttgcaacaac ataatcatta acattctcaa acacgataaa gaatcaattc
      841 tagttgatag ataatatata atttttgttt gctttatgaa tagtacatac tcacatatat
      901 ccccccttct tctacatgtt tgttttaact atatctattt ccagtgaatt tgttttcaat
      961 ttcagattac tagatagtaa cgcagttcat agatgagcaa gataaggaat agtaatcacg
     1021 atagttattt tttgtaatat gcaatcaaca ataaacaatc aacacaataa ccgttgagca
     1081 aatcaagcag ttatcatccc gtaaatgttg gcattgcttt ataatgataa gaataatata
     1141 aatttcaacc tgtctatcac attgcattat ttaatcatcg tagtagtagg aattgtatct
     1201 gtgtgaaaaa tggttgatag taggagattt gacaaaatag acgataaacg aattataatt
     1261 tttatatttt ttatttaatt atctctttat gtattatttg cataaacaat ttaataattt
     1321 gtaataatta aactagttta gattattatt acaattagaa gtatcttatg gatttttgtt
     1381 gtaaaatata aaacagaata atttccctaa ttatataaat atcagttaaa ttgtctttat
     1441 ttgatgaaaa gctcaataat agtaggcctt atgtcaatag tggctctagc agtagtagga
     1501 gcagttggga gtttagcagc accagtgttt gcagaagacg acggtcacga ctacaagtat
     1561 ctaaaatgca agaaatacga caaagattat gacaaatacg atgacggcga ctactttaag
     1621 ctgaaatgca agaaatataa agattagtta attagataaa taactaacct tttattttta
     1681 tttttatttt caattttcag cacataagtc aatcaatata tttcaatgaa gaggcttttc
     1741 atttatactg agaaattatt ctgtatcatc gtatcgaatg tatattcgca aaaagaacct
     1801 ccaatagcag agattaatag aagtaaatga atgaatatat ctatagatag atgataaata
     1861 gaaaaggtgc atccaccatt gctagcggtg ttattgttgc tattgctctc atcgttatta
     1921 taattgccat attccttttt ctgtttcttg gtaatggtag tttaagtaat agtagtagta
     1981 gcagtagtag caatgatgcc attaaaaata gctctgcacc atacattgaa ctgaaatatg
     2041 atgaatggat gatagatccc cttaatgtcc atataatcgt caatgaaaac acacaagaac
     2101 aatcgaagaa atatctagac gatataataa aggccatcaa caaatggtca tatctattaa
     2161 aagaatatag cggcagtcat gattcttgga actttaaaat aacaacttcc atagatgaac
     2221 caagtcaata ctctcagttt gaaaatgata agcatacaca taatattgtt atagagcttg
     2281 taggagagct agaaggagat gagtgcagca gttattttgg atattcagac cgggagtttt
     2341 ctgacacatc tcctgagatt tctgccaaag tctttacttc atgtccagat gatagtaatc
     2401 cttattcaaa aggtaatgat ttacctcatg atttagtata ttcaacagtg tctcatgaat
     2461 tcggtcacat gttgggctta ggccatgcgc ataatataga tggagacctt atgtgcagta
     2521 tagaagaaga cgaagaaaac ggtaatagtt ttgaatcatg ttataaagat cgcgctaaaa
     2581 tgatagaacc atctgagtca gatatcaagg ctttaatcta taaatacaaa gagaatggct
     2641 ttaagactcc taatcgtgaa ttagaattag aggacgaaga aggagaagaa ggagaaaaac
     2701 aagatgaata taaatttaaa atagaggata gttgacaact ctatgtatgt ctgtttttct
     2761 atatatggta catcgaaaga gagaactatc aaaggtgtta tcaacaaaac tactatagaa
     2821 gatataatgc attcctatac taaccaagct tgatattcaa gctcattgac taaagatgca
     2881 atgttaccta atagattttc caaaatattg ttattaaaaa at
//
LOCUS       DATAAS010000011         1908 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4326534, whole genome shotgun sequence.
ACCESSION   DATAAS010000011 DATAAS010000000
VERSION     DATAAS010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1908
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4326534"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..221)
                     /locus_tag="VHF08_00120"
     CDS             complement(<1..221)
                     /locus_tag="VHF08_00120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067087.1"
                     /translation="MAIITNRKSLERRHREYNSLKYALDALESAVMSVQPEILIRRAV
                     KLRDSKLLISDIRGNKAELDLDNFNSIFIV"
     gene            801..1163
                     /locus_tag="VHF08_00125"
     CDS             801..1163
                     /locus_tag="VHF08_00125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067088.1"
                     /translation="MVADLRLKGMVGKRGLMFVTYYGRSRAFIANYSSWQEYHNEGRI
                     AEIASSLISHEALHLVLNKFSLSASAKLDNLFGRSNTWENYPHGLGDLDRVNATVPLN
                     YKSGQRNHQNTRRRSTRH"
     gene            1217..1642
                     /locus_tag="VHF08_00130"
     CDS             1217..1642
                     /locus_tag="VHF08_00130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2203 domain-containing protein"
                     /protein_id="HEX2067089.1"
                     /translation="MFTLFTPQDANKILPDVIRRFNTIIIQNRHIVELQHELQRLVES
                     DSSFEPFIKKKQTLNVAVSNLYRAIEQLENMGVMIKSVDEGLLDFPSMRFDEEVWLCW
                     KVGETEIKFWHSKQEGFMGRKPLAPKGFHIGEEDLADLR"
BASE COUNT          645 a          296 c          312 g          655 t
ORIGIN      
        1 actataaaaa tggaattaaa attgtctagg tctaattctg ccttgttacc tctgatatct
       61 gatattaata gcttggaatc ccttagtttt acagctcttc ttataagaat ttcaggctgt
      121 acggacataa ccgctgactc taaggcatca agtgcatact tcaatgaatt atattcacga
      181 tgtcttcttt ctaatgactt tcgattagta atgatcgcca ctattgttgt aattatacat
      241 aaatataatt aattcttaac atgacttgtt ccgtaaatta gatattacta ttgatatcct
      301 ttgcaaaagt cgctaaaaaa agaggattct aatataacaa ctataaaatg aacatataca
      361 ttagtgtatg cttgacaggt tcgaggttat tttaccatta cctagcaata catatgtgga
      421 tttgatattc ctgtagccga tgatcaatgt tattttacca tatgacacaa gactctctgt
      481 ttatatcctg aagtattttt cttatcacta aaaagtattg aagaaattcc atgattgcca
      541 ttttatttat ttgtcaagga aatactatga aattttttaa aaaagtttcg gtagccaata
      601 tcgactttta ataaacatgt attattattc agaacataca aaggaaaaat gttatttact
      661 ttaaagaatt cataatatat tcgatttttc ttcattctga agaaattttt tttattaata
      721 atgacgatat ttaagtaatc ttcctatgac aatcttaatc ttatcttaga gaaattatat
      781 gttattcttt agtgatatac atggtggcgg atctcagact caagggtatg gtcggaaaga
      841 gaggattaat gtttgtcact tattacggaa ggtctcgtgc ttttatagct aactatagct
      901 cttggcaaga atatcacaat gaaggtagaa ttgcagaaat tgcctcttcg ttaataagtc
      961 atgaagcatt gcatctcgtg ttaaacaaat tttctttgtc agcctcggca aaacttgata
     1021 atctattcgg cagatcaaac acatgggaaa actatcctca cgggttaggc gacctagata
     1081 gagttaatgc aactgttcca ctcaactaca aaagtggtca gagaaaccat caaaatacga
     1141 gaaggagaag tactagacat taatcatatt ctctcgaggc aatacataat tatatgtaaa
     1201 aataattcta tatctgatgt ttacattatt tacacctcaa gatgcaaaca agatcctccc
     1261 cgatgttata cgccgtttta atactattat tatacagaat agacacatag ttgaattgca
     1321 acatgaattg cagagactag ttgaatcaga ttcgtctttc gaaccattca ttaaaaagaa
     1381 acaaactcta aatgttgctg tttccaatct ttatagagca atcgaacagt tggaaaatat
     1441 gggagtaatg ataaaaagtg tcgatgaagg attattagat tttccttcaa tgagatttga
     1501 tgaggaagta tggctttgtt ggaaagttgg agagactgaa ataaaattct ggcattcaaa
     1561 gcaggaaggc ttcatgggaa gaaaaccttt agcccccaag ggatttcata ttggagaaga
     1621 agatcttgca gatttaaggt aatttcagat atgattccta gaacagcatt cacaagattt
     1681 ctgtttgctt ttatattccg ttacggcatt acttctaggc tgaaatctaa gatatatatc
     1741 taaatttcat ccatttgctt atgatataat agaaagtctt ctgttaggct ttcatagtca
     1801 gaatttcgtc aaagacattc tgtcgactac ttgtaaatta aatctgagct aagcttaagg
     1861 agttctttat tgaatatgaa aaagcattct tttaatctat tacttttg
//
LOCUS       DATAAS010000012         2722 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3786554, whole genome shotgun sequence.
ACCESSION   DATAAS010000012 DATAAS010000000
VERSION     DATAAS010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2722
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3786554"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            151..1626
                     /gene="glnA"
                     /locus_tag="VHF08_00135"
     CDS             151..1626
                     /gene="glnA"
                     /locus_tag="VHF08_00135"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004356 - glutamine synthetase activity
                     [Evidence IEA];
                     GO_process: GO:0006542 - glutamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEX2067090.1"
                     /translation="MSFGDKPRLEFDHTIKNNSNNDETKWQDIEFIQVRYTDVPGKFL
                     AKYYLLKDNEHFYDVCRNGIGLDGSSVKGFASIDESDLLLLPDRLTATLSPISSYKTV
                     TVIADVHRGFGQGRLTKDPRYISQHMEEYLAENNLFCQVGAEVECFVFDDIVFNNNNT
                     NKDHELEIISTEQYGTGKYPIRAKGGYDAPPFQDSLMEFRFKVADILKKYHSIIATNL
                     NHEVASNGQIEINFMHNTLTKTADNVQTYKDVVRNVAKQYNKIANFMPKPIFDKKNPN
                     SGDNGSGMHVSISLWSKSSGSKNIFYDKDDNYAELSQEGRYYIGGMLDHASSLAAIVA
                     PTVNSYHRMVPGFEAPVYIAWSRGNRSAVIRVPVNEKNNAKSKRIEFRAPDPSANSYL
                     AFSAIVAAGLDGIKKKIDPGDPTSENIYKMSDSRRNSLGIKSLPGSLEESLEALKNDS
                     DYLKICFNNELLDTYMAIKEEEMIEAGERTKMSQFILYYDV"
     gene            complement(1838..2092)
                     /locus_tag="VHF08_00140"
     CDS             complement(1838..2092)
                     /locus_tag="VHF08_00140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067091.1"
                     /translation="MVNVYEIHRYAGDDFQYVVARTSKYAEEKIRKDVERMNAMLSDE
                     LKAQGIRYVFATAPSTTDIIKHQANKQERKKLVQCLEKPL"
     gene            complement(2353..>2722)
                     /locus_tag="VHF08_00145"
     CDS             complement(2353..>2722)
                     /locus_tag="VHF08_00145"
                     /inference="COORDINATES: protein motif:HMM:NF013980.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="M48 family metallopeptidase"
                     /protein_id="HEX2067092.1"
                     /translation="DRRKYKYDIKEWYRRQTAQIVAERLPMISRRLDLQYNRVSIKSH
                     TSRWGSCSKKRNLNFNLLLAAVPIKVIDYVLTHELIHLIELNHSKRFWSLVASAYPEY
                     KKYREWLNRYGPLIKIARYY"
BASE COUNT          971 a          428 c          471 g          852 t
ORIGIN      
        1 aactttttaa ttatcttaac atctgtttca tccaaagcca ttgtatcttt aattgtctaa
       61 catattaaaa gcatcggcta aatatattta tcatatatta agaaaaggaa tgttaatctt
      121 tttatgttac aagtgattat aatttaataa atgtcttttg gagataaacc tagattagaa
      181 tttgatcata ctataaaaaa taatagtaat aatgatgaaa caaaatggca agatattgaa
      241 ttcattcaag taagatatac agatgtgcca ggaaaatttc ttgccaagta ttacctttta
      301 aaagacaatg agcatttcta tgacgtttgt agaaatggca ttgggcttga cggatcatct
      361 gtaaagggtt ttgcaagtat agatgaatct gatttattac tcctaccaga tagactaact
      421 gcaacattaa gtccaatatc aagttacaaa acagttacag tgattgcaga tgttcatcgg
      481 ggttttggac aaggcagatt gaccaaagat cctagatata tatctcagca tatggaggaa
      541 tatctcgcag agaataatct cttctgtcaa gtcggagctg aagttgaatg ctttgtcttt
      601 gatgacatcg tatttaataa caataatact aacaaagacc atgaacttga aataatatca
      661 acagagcaat atggtactgg caaatatcca atccgtgcga aaggaggata cgacgcaccg
      721 ccatttcaag attcccttat ggaatttaga tttaaggttg cagatatatt aaaaaaatat
      781 cattctatta ttgccacaaa tctaaatcac gaagtagcaa gcaatggcca gatagaaatt
      841 aactttatgc ataatacact aacaaaaact gcagacaacg ttcagacata caaagatgtg
      901 gtaagaaatg tagcaaaaca gtataataag atagcgaact ttatgcctaa accaattttt
      961 gataaaaaga atccaaatag tggcgataat ggttcaggca tgcatgttag tatcagttta
     1021 tggagcaaat catcaggtag taaaaatatt ttctatgaca aagatgacaa ttatgcagaa
     1081 cttagccagg aaggaagata ctatatagga gggatgttag accatgcatc atccttagcg
     1141 gcaattgtag caccgacagt aaattcttat catcgaatgg ttccaggctt tgaagcccct
     1201 gtgtacatag cttggtcaag aggaaatagg tctgctgtta tacgcgtacc tgttaatgag
     1261 aagaataatg ctaaatcaaa acgtattgaa tttagggccc ctgatccctc tgccaattct
     1321 tatctggcat tttcagcaat agtagctgca ggacttgatg gtatcaagaa gaaaatagat
     1381 cctggcgatc ctactagcga aaatatttat aaaatgtctg attctaggag gaatagcttg
     1441 ggaataaagt ctcttcctgg cagcttggaa gaatcacttg aagcattgaa aaatgattca
     1501 gactatctta aaatatgctt taataatgaa cttttagaca cttatatggc tataaaagaa
     1561 gaggagatga tcgaagctgg agagagaaca aaaatgagcc agtttatact ttattatgat
     1621 gtataagaga tgatattaat agtagtaaca aaaaaataaa attaaaggag cgagcgaacc
     1681 tcctctacaa ataggacata actcctacag agaaggacaa tagtagtagt gtaatactaa
     1741 tagcattata tggtagtcat atattgccat tgattgtagc atttatttgt cctatattat
     1801 gttaaaaaat aaatgatgaa aataaaataa tttattgtta aagtggcttc tctaaacact
     1861 ggactagttt ctttctctct tgtttgtttg cttgatgttt tataatatct gtagttgatg
     1921 gcgctgtggc aaacacgtat cttattccct gagcttttaa ttcatcgctt agcattgcat
     1981 tcattctttc tacatccttt ctaatctttt cctcagcgta tttgctagtt cttgcgacga
     2041 catattgaaa gtcatcacca gcataacggt gtatctcata aacattaacc atattaactc
     2101 ataatcacct ttagatttgc ttgcaacata ttctgaacaa caaagtaaac cttttggtta
     2161 acaaaaatat tcaattgaat aaagagatct cgtttctttt caaaaaagat aggtagacat
     2221 aacaaggaag agagagagag agagagagag agagaagatt gatccacaaa atagaaaaat
     2281 tagacataaa ttgaaaagaa tattctctat taccatacaa gagaaagacg actttgatga
     2341 taatgatgga ttttaataat atcttgctat ttttattaaa ggcccatatc ggttcaacca
     2401 ttccctatat tttttgtatt caggatatgc tgaagctaca agactccaga atctctttga
     2461 atgattgagt tctatcaaat gaattagttc atgagtaagt acataatcta ttacctttat
     2521 tggaacagca gctaaaagta aattaaaatt taaatttctc tttttagaac agctacccca
     2581 cctagacgta tgacttttga tcgaaactct gttatattgt aagtcaagtc ttctactgat
     2641 cataggaagg cgctcagcta ctatctgagc agtctgtctt cgataccatt ctttgatatc
     2701 atatttatat ttacgtctat ca
//
LOCUS       DATAAS010000013         1641 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4326893, whole genome shotgun sequence.
ACCESSION   DATAAS010000013 DATAAS010000000
VERSION     DATAAS010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1641)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1641)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1641
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4326893"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            212..364
                     /locus_tag="VHF08_00150"
     CDS             212..364
                     /locus_tag="VHF08_00150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067093.1"
                     /translation="MVKEEDIFFFHRPKEIAEVTLNGWGWSINRNRLLGSSFTSEDVD
                     DFSRQI"
     gene            342..1049
                     /locus_tag="VHF08_00155"
     CDS             342..1049
                     /locus_tag="VHF08_00155"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HEX2067094.1"
                     /translation="MIFQDRFDAAEKLAEKLQWIKEEDKEEGIQRKSIIILSVPRGGV
                     VIGDIISRMLDAKLDVVVSRKVGAPYNPELAIGAVMPDGSFFPNENIIKILKISDSYI
                     NAEIAAQMKEIDRRLISFRGSKDYGNHLQYKTVVLVDDGIATGATILAATQWLKKKRN
                     NKKLIIAVPVAPKDIADNLNKVADKVVILYSPSSFESVGQFYQDFSQVSDNQVKKIMH
                     RHGYKVSLNFSFTTIIL"
BASE COUNT          549 a          243 c          290 g          559 t
ORIGIN      
        1 cacctattag aagaaccttg ttctctgtca ttctttatct taaaagttaa attgatttaa
       61 aatctctcat atactagaga aatatatata tttttttttt atatatatat atatttttat
      121 tccaaagaag agtctattcg atttactatc cttaatttag tcaggaatag tatttgtaac
      181 atatatcttt gatgttttct agcgatgata catggtcaaa gaagaagaca ttttcttttt
      241 tcatagacca aaagagattg cagaagttac tttaaatgga tggggttggt ctataaacag
      301 aaacagactc ttgggttcaa gttttaccag tgaagatgta gatgattttt caagacagat
      361 ttgatgccgc tgagaaactt gcagagaagt tgcagtggat aaaggaagaa gataaagaag
      421 aaggcataca gagaaaatct attattattc tatctgttcc tcgtggcggg gtagtcattg
      481 gagatattat atcaagaatg cttgatgcta aactagatgt tgtggtttca cggaaggttg
      541 gagcgcctta taaccctgaa cttgcaatag gtgctgtgat gcctgatggc agtttttttc
      601 caaatgaaaa cattataaaa atattgaaaa tatccgacag ctatatcaat gcagaaatag
      661 ctgcacagat gaaagagatt gatcgcaggt taataagttt tagaggaagt aaagattatg
      721 gtaatcatct acagtacaaa acagtggttt tagttgatga tggtattgca accggagcaa
      781 ccatattagc tgctacccaa tggttaaaga agaagagaaa taacaaaaaa ttaatcatag
      841 ctgtacctgt agcaccaaaa gatatcgccg ataatctgaa taaagtggca gacaaagtag
      901 taattctcta ctctccatca tcatttgaat ctgtaggaca attctatcag gatttttctc
      961 aagttagcga taatcaagtg aagaaaataa tgcacagaca tggatacaaa gtgtctctaa
     1021 actttagttt tactacaatt attttataac ctaggatgca gcctgcggtt tagcagatat
     1081 atgctaatat ataatctaga tctattatga taatggatag tggcgcatct ttttgatatg
     1141 tgtgaatatg tcttgtagtg cattacaata gaggagcaat tcatgatatt gtcatttatg
     1201 gattcgcttt tgcatgttat ggacatccat tatcgtcctt aaatggtgca tgtctattat
     1261 ttttattcaa acttatattg tcttcgtttc tactaactgc cggtaggcta gtactgttaa
     1321 tgtaataata gttctgagaa gagcacgacg gattttcaag attttgtgaa tattgctagt
     1381 atctgttgta tagtaatcta ggataagtaa aaatctagct gttgatagaa caatatcctt
     1441 agtcaaaatt tcttatactt tcgtaaattc atttcttatc ttcataaata ttaagaatgg
     1501 acataatcaa ctaatataac caaattgaat cgtcttcagt tttcttaaac aacatccttt
     1561 ttacatcttc acaacaatct acttacttta aaccgattcg tatatttcta ctgcttctgc
     1621 aaggcttgat atcaaagact c
//
LOCUS       DATAAS010000014         1973 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_546588, whole genome shotgun sequence.
ACCESSION   DATAAS010000014 DATAAS010000000
VERSION     DATAAS010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1973
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_546588"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..953)
                     /locus_tag="VHF08_00160"
     CDS             complement(<1..953)
                     /locus_tag="VHF08_00160"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEX2067095.1"
                     /translation="MSGAEPLGEEVDSRLHKLVSKITEKEAVESTNIKIIQNPRESIK
                     LAYNIVKSAKEEVLRIFPSINAFRRQTRIGIMHLFKEAVEQGVKVRILITGDEQQIIQ
                     ITNEVSLALPQIDIRAIDKSLHTRIGIVVVDRKESLIIESKDDTKDNSYDASGLAAYS
                     NSKPIALSYASIFESLWKQAELYEKLKVHNKMQKEFINIAAHELRTPIQPILGLSELL
                     RSKISDNNDEQKELLDTIIRNAKRLKRLADDILDVTKIESQSLQLKKERFNITQMILN
                     ALADYRRRNDTNKEEEKEKIKVVVAFKEDIFVEADRDRLNQV"
     gene            1760..1894
                     /locus_tag="VHF08_00165"
     CDS             1760..1894
                     /locus_tag="VHF08_00165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067096.1"
                     /translation="MTEECQNCRKKVEKYVILQVAEFYDTTQDVEAASYEDAVVCKMC
                     "
BASE COUNT          609 a          314 c          311 g          739 t
ORIGIN      
        1 acctgattca gcctatctct gtctgcttct acgaagatat cctctttaaa tgcaactact
       61 acttttattt tctccttttc ttcttctttg tttgtatcat ttcttcttct gtaatctgca
      121 agagcgttca atatcatttg agtaatattg aaccgctctt tttttagttg tagtgactgg
      181 ctctcaattt ttgtaacatc aagtatatcg tctgcaagcc tcttcagtct tttagcattt
      241 ctaatgatag tatctaacaa ttctttttgt tcatcattat tatcacttat tttgctacga
      301 agaagctcag acaagccaag tattggttgt ataggtgttc gtagctcatg tgctgctatg
      361 ttgataaatt ctttttgcat cttattgtga acttttagtt tttcatagag ctcagcttgt
      421 ttccatagac tttcaaaaat agaagcgtat gataaagcaa taggtttact atttgagtat
      481 gcagccaatc ctgatgcatc ataagaatta tcttttgtat cgtcctttga ttctattatt
      541 aaagattctt ttctatcaac tactacaatt ccaattctag tatgcaaact cttatcaata
      601 gctctaatat ctatttgggg taatgctaag cttacttcgt ttgttatctg aataatttgc
      661 tgctcatcac cagtaattag tatcctaact tttacacctt gttctactgc ttccttgaat
      721 aagtgcatta tacctatgcg tgtttgtcgg cgaaatgcat tgattgaggg aaatatcctt
      781 aatacttctt cttttgctga ttttactata ttataagcta gctttattga ttctctagga
      841 ttttggataa tctttatgtt agttgattca acagcttctt tttctgttat tttactaact
      901 agtttatgta gtcttgaatc tacttcttct cctaatggtt cagccccaga cattgtcatc
      961 atcattcttc tttttaattt tcttttttta ccctagctat catatattag agagagagag
     1021 agagagagag agagagagaa acactttttt ctatctcagt catcagctgc tcacaaatac
     1081 tgtttttatc tgcttgaaga tacagggttt tattgttgtg tcatcatgaa gtctacatgc
     1141 tataaagtgc cagactgatt caagcgcaag gtaagtaatg gagaacccaa ggattgtgta
     1201 tatagccagg tttagatttt catacatgga tatttaatag aactagatga atataaggtt
     1261 cattttaaaa aagttagaca actgaaaggt ttaattggat aaaacttaat atacgttaac
     1321 tatgatccac ataaataaga atctagttat caagtgtaaa atgctaatta attaacatga
     1381 tagtaggttt atttatgagc agttataaca attgatactg ctatttactt tttgctgctt
     1441 attattttgt cttatcttct actctttcat atttagaagg atgcttttga cctattacaa
     1501 atacaatagc caacaacaac ctgttatccc aaatgtcttg cgaaagtcaa agaattctta
     1561 tgccaagttc ttcctactac cgctgaagaa ggaagcgatg aatcactcac gacaaaactt
     1621 aagtgcaata tttattaata atattcggaa aaatatagtt aaaaaactat tttatctcaa
     1681 taaatatgat ttattatagt aactacttat ctatattgaa atagtagagc ttggaaaatt
     1741 aaggagtcaa taatgatcta tgactgaaga atgtcaaaat tgtagaaaga aagtggaaaa
     1801 gtatgttatt ttgcaagtag cagagttcta tgatacgact caagatgttg aagcagctag
     1861 ttatgaagat gcagtagtat gtaagatgtg ttgaaaggat ataaagaaaa acccattcgt
     1921 attaaagaag ataattaaat gcatataaaa gcccaattcc tgatggagtt gtc
//
LOCUS       DATAAS010000015         2026 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_9300, whole genome shotgun sequence.
ACCESSION   DATAAS010000015 DATAAS010000000
VERSION     DATAAS010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2026
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9300"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            110..295
                     /locus_tag="VHF08_00170"
     CDS             110..295
                     /locus_tag="VHF08_00170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067097.1"
                     /translation="MDSEEIPDDINIHKKIWGKNANEVVYGGKKDKDKNEQDDRCLFC
                     DSRIDEFGYCACGSASG"
     gene            complement(500..871)
                     /locus_tag="VHF08_00175"
     CDS             complement(500..871)
                     /locus_tag="VHF08_00175"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2067098.1"
                     /translation="MDDELDVVRVLKIYLEKKGFQVDTFTNANLALQHFKNKFSPFNA
                     HPFDLMVLDIKMPTMNGFELYNKIKEYDSSIKVCFMTALDELQEYNQYKVEVSPATGK
                     RHFVQKPIRNEQLLDQIISML"
     gene            complement(1066..1791)
                     /locus_tag="VHF08_00180"
     CDS             complement(1066..1791)
                     /locus_tag="VHF08_00180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067099.1"
                     /translation="MQSHFWIGSFCRCNSKGRYYFPRGTVATSDIITLVNDLGNRIPD
                     KSWMLYLLEIFNSQNIACELNLICQFDDQDYFEAIFQGRNQYRFKEVLPLVGHSYQRQ
                     IILNRAKSVISYILTDKTANHTELFEFRVNNDSNNSKKSRSGFEALNQFTGIEWWNKV
                     GSVPYPIRYHVEISQLLYGLNDVGNLDPNSILFRPYDALIPNSEGAAMEYPISFANCK
                     IKDDGCISYDIFNGICRKGLGYS"
BASE COUNT          632 a          372 c          336 g          686 t
ORIGIN      
        1 cggagctctc atggaccatt gtttaaactg gttgaatatt gcagggttat agacctttta
       61 acacatctat gagataaata tcggtaaatc aaagatacaa ttacctagtt tggatagcga
      121 agaaattccc gatgatataa atattcataa gaaaatctgg ggcaaaaatg ccaacgaagt
      181 tgtatatggc ggaaaaaagg acaaggacaa aaatgaacag gatgatagat gtctcttctg
      241 tgattctcga attgatgaat ttgggtactg tgcatgtggg agtgcctcag gttaaccctc
      301 atccatataa ttactattag aatatctgat acgacaaacc aaaacagaca ttcgacattg
      361 attagattaa taatttgaaa aatgttcttc gaatatacaa atgtaatgtc aaaccatgaa
      421 ccagcggcta aaatagcgta ttcgtattgg caagtataat tattcaccga gatcgactct
      481 tgttaaatta gtcattattt tatagcatag agattatttg atctaataac tgttcatttc
      541 taatcggttt ttgaacgaaa tgtcttttgc cagttgctgg cgagacttcg actttgtact
      601 gattatattc ttgaagctca tctaatgcgg tcataaagca caccttgatg gagctgtcat
      661 actctttgat tttgttatat agttcaaagc cattcattgt aggcatcttg atatccaaaa
      721 ccatcaagtc aaatggatgt gcgttgaagg gtgaaaattt atttttaaaa tgttgcaatg
      781 ccaagttggc attagtaaaa gtatcaactt gaaacccttt tttttccaaa tatatcttca
      841 gaactctaac aacatcgagc tcatcgtcca ctatcattat ttttcttttc ctttttagtg
      901 taaatcctct cgtaggttcc agcgttcaat atatagtata catagaaaaa aagttatcta
      961 aacctgcaga catgcagata taacagggca tttgacgtaa ttgtttgtta atgatgtatt
     1021 tttcagtttg ctagtcttaa tccttagatc ctttatacac tcacactagc tatatcccaa
     1081 ccctttcctg caaatgccat tgaaaatatc gtaggagatg cagccatcat cttttatttt
     1141 acaattagca aatgaaattg ggtactccat cgcagcccct tcggaattgg gtatcagagc
     1201 atcatacggc cgaaaaagta ttgagttagg gtccagattc ccaacatcat ttaatccata
     1261 tagaagttgt gatatttcta cgtggtatct tattgggtac ggaacgcttc caactttatt
     1321 ccaccactct attcctgtaa actgatttaa tgcctcaaaa ccagatctag acttcttgct
     1381 attattacta tcattattta cccgaaattc aaatagctct gtgtggtttg ctgtcttgtc
     1441 agtcaagata taactaataa cgctttttgc ccggttcaaa ataatttgac gttgatatga
     1501 atggcctaca agaggtagta cttctttgaa tcgatattgg tttcttcctt gaaaaatagc
     1561 ttcaaagtaa tcctgatcat caaattgaca tattaaattg agttcacagg cgatattttg
     1621 tgaattgaaa atttcaagca gataaagcat ccatgatttg tcagggattc tatttcctaa
     1681 atcattaacc aatgttataa tatctgaagt agcgacagtt ccacgtggaa aataatatct
     1741 tcctttagag ttgcagcgac aaaatgaacc tatccagaaa tggctctgca attacctgtt
     1801 gtattggtaa tcgcattttt tatttattct ttttttgttt atctatttta ttcttttatt
     1861 atttttttat tcttgcttac ccaaaaccaa tctgtgatat cgcttcccta gtttagttgg
     1921 gcacaatcct gtatatactt ccgtgtccaa gcgagacgac atagagatag ccatcatatg
     1981 gtcctacttc aagatcagaa attccaccaa acccctctcc aaaaat
//
LOCUS       DATAAS010000016         1629 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4329898, whole genome shotgun sequence.
ACCESSION   DATAAS010000016 DATAAS010000000
VERSION     DATAAS010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4329898"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(179..691)
                     /locus_tag="VHF08_00185"
     CDS             complement(179..691)
                     /locus_tag="VHF08_00185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067100.1"
                     /translation="MKTPICTFDAKAAILCTKCETKLRLGHLTHADVDGAIKISRLAE
                     RNQDVNKFTMIRASKVDDDFILSLCGADISVLRTNSSLIKKFEDEFQNKVWFVEAEAT
                     DRRFIENLFFPTKVLTVNLIWLPDGSKSTKVIISTRNKPQLQLNVEKIKKIAKEIRNI
                     ELLVEFEHLK"
     gene            complement(688..1026)
                     /locus_tag="VHF08_00190"
     CDS             complement(688..1026)
                     /locus_tag="VHF08_00190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor eIF-1A"
                     /protein_id="HEX2067101.1"
                     /translation="MGKRKVLTESYLKELVLPRQGELLGRVIKLVGGDNIIVKCTDGK
                     VRICRIRGKIKRRMWIRDNDLVLVSPWDFQSDRADIIWRYITAHVDKLEQDGYLADLR
                     QFNNNVVISS"
     gene            complement(1321..>1629)
                     /locus_tag="VHF08_00195"
     CDS             complement(1321..>1629)
                     /locus_tag="VHF08_00195"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2067102.1"
                     /translation="TRFNQLLNSIEKSNPKTLSTRLREMERLGLIKRKVYSNQRPIRV
                     EYSLTQKGLALQPILDMMAAYSMKYCSKDILKDAKPREFKDIYRRDIAEMPTINHLLS
                     "
BASE COUNT          493 a          300 c          226 g          610 t
ORIGIN      
        1 atctgtagtt tcgctataat gttggctaat caaccttgtg ttacctcaat tattagcaac
       61 tatatgttat aattgtttcc taatctctat atatacgata gtacagcctg taattttcta
      121 tacatcagta tagaaagtct aatattttat atttgtaatg gtgcagacgt tttgcatttt
      181 actttagatg ttcaaattct actagcagtt cgatatttct aatttcctta gcaatttttt
      241 ttattttttc aacattcaat tgcaattggg gtttatttcg agttgaaata attactttgg
      301 ttgatttgct tccatctgga agccaaatca gattgaccgt gagaaccttt gttggaaaaa
      361 ataggttttc aatgaatctt ctgtctgttg cttcagcctc gacaaaccaa actttattct
      421 gaaattcatc ctcaaacttc tttattagag atgaatttgt ccgcagaaca ctaatatctg
      481 caccacagag acttagaatg aaatcgtcat ctactttaga tgcgcgtatc atggtaaatt
      541 tattgacatc ctggttgcgt tctgctagtc tgctaatttt tattgctcca tcaacatctg
      601 catgtgtcaa gtgtcctaat cttagtttgg tttcacattt tgtacataat atagcagctt
      661 ttgcatcaaa agtacaaata ggagttttca actgctaatc accacattat tgttgaattg
      721 ccttagatca gcaagataac catcttgttc tagtttatct acatgagctg taatatatcg
      781 ccatataata tcagctctat cagattgaaa gtcccatgga gaaactaata ctaaatcatt
      841 atctcttatc cacattcttc gcttaatttt tcctcttata cgacaaatcc ttacctttcc
      901 gtcagtacac tttacaataa tattatctcc tcctacaagt ttgataacac gacccaatag
      961 ctcaccttgc cgaggtaata ccagttcctt taaataagat tcagttaata cttttctttt
     1021 gcctattttt taatgttcac caatcaaata ttcgcataat gaacttaaaa atatatacct
     1081 actatacatt tgatagtctt ctaatttagc ctcttttgtg tagacaataa tagacgcagt
     1141 aatatgtgtt catcagcgta aatcaagtta caccagaatt aatatagtga atatttagaa
     1201 tatatgaact ggttaactaa caggctaaga gataatacca catacaaatc aacaatgaag
     1261 gattacattt tttatatata ctcacatcta taccactata ccattttatg gtaacgcaac
     1321 ctatgaaagt agatgattta ttgtaggcat ttcagcaatg tctcttctat aaatatcttt
     1381 gaattctcgt ggctttgcgt cttttaatat atctttacta caatatttca tagagtatgc
     1441 tgccatcata tctaaaattg gttgcaaagc cagacctttt tgtgttagag aatactctac
     1501 tcttataggt ctttgattag agtaaacctt acgctttatt aatccaagtc tctccatttc
     1561 tctgagcctt gtagatagag ttttgggatt acttttttca attgagttta gcaactggtt
     1621 aaacctagt
//
LOCUS       DATAAS010000017         5062 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_549990, whole genome shotgun sequence.
ACCESSION   DATAAS010000017 DATAAS010000000
VERSION     DATAAS010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5062)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5062)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5062
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_549990"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(161..505)
                     /locus_tag="VHF08_00200"
     CDS             complement(161..505)
                     /locus_tag="VHF08_00200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannose isomerase type II C-terminal
                     cupin domain"
                     /protein_id="HEX2067103.1"
                     /translation="MDIYTENGPWGKFEKFHENQLSTVKLIYINANSRLSLQYHRERW
                     EFWKVIKGTAQVELDGKIVEVKEEETIDIPKGVRHRVKALNNNCVILEIAYGKFDEND
                     IVRIEDDYQRII"
     gene            621..809
                     /locus_tag="VHF08_00205"
     CDS             621..809
                     /locus_tag="VHF08_00205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067104.1"
                     /translation="MCLQNEHGSCEGIILEIIKGSKITKFCNCSCHNNMYQLIRNTLA
                     IVNQRNSYIDYGGFPDRL"
     gene            complement(1014..1355)
                     /locus_tag="VHF08_00210"
     CDS             complement(1014..1355)
                     /locus_tag="VHF08_00210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067105.1"
                     /translation="MANKQLTFDEKQVTLDEWMIERLKDKLGKAAANANRTGKPILLY
                     RNIIEENEAAAEEEVATVSEKNAIVQVFTYGGFIPPTFQQQHIFRLDEFPMWVMKRGR
                     NLLLQCLENLE"
     gene            complement(1561..3912)
                     /locus_tag="VHF08_00215"
     CDS             complement(1561..3912)
                     /locus_tag="VHF08_00215"
                     /inference="COORDINATES: protein motif:HMM:NF012361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEX2067106.1"
                     /translation="MIPELDILAKEGSIHFVVAEDFVDAVATGSGIVHLSPANGEVDF
                     DIATKRNVPIFVPIDDRAFFTEKAGEFKDIFVRDADRTIIKAMEDAGAAIKSGTIKHQ
                     YPTCWRSHHKLVWIARREYFYIIKKLGDLPLEAAQNVEYFYEPPKNRFSEIIKEKVPW
                     CISRERVWGTPLPIWSCSQCGHKVPLFSRDEIIKKATNLPDGPNFELHRPWIDRIIMK
                     CDKCKENMQREPYVLDTWHNSGGAPYASLSDVEYQNLIPASFLTEGIDQTRGWAYTLL
                     MENVILQQCAIAPFKSFLFQGHVLDDKGNKMSKSIGNVIDAYNLLRENSVDLVRFYFM
                     WKSSPIESLNFSLKEMEKRPYQVMSTLYYLHTYFKQNSSFDRFDQNKHNLTWVLDNNL
                     LTLPEIWLLSKLQHLISQVTIAFEGCRYNEGAKAIEEFIINQLSQTYIPFTRNDIWDD
                     SPEGVNRRFAIYSILSYSLMQIDIMLHPYSPFITDYLYLRCFPYLIKSTILLERWPKY
                     EGQLVNRMIEEAFDKSKEVISLANAARMKVQLKRRWPMKEAIICSPDLTFLSVDGISN
                     IIKNQLNVENYTLVEIHEDTELVKLLSLLEKKLPIVPKIELIRKNIAPSVKGNIDKVI
                     LAFEKLDKIELLKALKSSSAGTFRLVYEGGGEFLLSADDLKLSYIVSEGYVMSERDNL
                     MVFISTQRDKELTAKGFLRDLARNLQQLRKECGYNPTDTLSTAFVADLYDEEISFLSP
                     LKDELKYLVRVKSIVLTKDVIEEEKIDYKLIDLEGRKLKISIQ"
     gene            complement(3985..4821)
                     /locus_tag="VHF08_00220"
     CDS             complement(3985..4821)
                     /locus_tag="VHF08_00220"
                     /inference="COORDINATES: protein motif:HMM:NF012361.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEX2067107.1"
                     /translation="MALQGKFDAKAFENEIRSYLDKINLKTLLKNELFDNNNNDIVSY
                     IEGPPTLNGEPHAGHLRGRVIKDVWYRFNTLQKKKVIFRAGWDTQGLPVELQAEKELG
                     LTGSKTDNLKKVGIEKIVETCKKLISYYNEKWVSADKLLGMSFDYENAYWTFSDKYIE
                     REWQYLKKAWENGILQEWFRVVAYCPSCQSSLSNAEVNQGYEIVEDPSFYYKVRLTSE
                     DAYLIVWTTMPFTVVTDEMIGVNPEAKYVYVIVKNDKNGKEEKWIVSEARLQDLMKQL
                     RI"
     gene            complement(4900..>5062)
                     /locus_tag="VHF08_00225"
     CDS             complement(4900..>5062)
                     /locus_tag="VHF08_00225"
                     /inference="COORDINATES: protein motif:HMM:NF015019.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004427 - inorganic diphosphate
                     phosphatase activity [Evidence IEA];
                     GO_function: GO:0009678 - diphosphate hydrolysis-driven
                     proton transmembrane transporter activity [Evidence IEA];
                     GO_process: GO:1902600 - proton transmembrane transport
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sodium/proton-translocating pyrophosphatase"
                     /protein_id="HEX2067108.1"
                     /translation="GKKKTQAHAIAVVGDLIGDPYKDTAGPALNTVIKLLNTVAIVFV
                     PVFIAILAM"
BASE COUNT         1507 a          975 c          780 g         1800 t
ORIGIN      
        1 ttaaaaagtc cattagccga gtcctaacaa ctattttttt gtggcaacta tcattgaatc
       61 tacgccatca agatgtagtg tcaaagtata gaaatttaag agaaaactag agcaacagat
      121 tatatataga tattaggtaa tgactaaccg aagttttcat ctatattatt cgttgataat
      181 catcttcaat tctgactata tcattttcat cgaacttacc ataggcgatc tcaaggatta
      241 cacagttatt attcagcgcc ttaactctat gccttactcc ttttggaata tctatagttt
      301 cctcttcttt aacttcaact atcttaccgt ctaattctac ctgagcagtt cccttaatta
      361 ctttccagaa ttcccatctc tctctatgat actgaaggct gagtctagaa ttggcattga
      421 tatagattaa tttaacagta gataattgat tctcatggaa tttttcaaat tttccccaag
      481 gtccattttc agtataaata tccatcgatg tctatattga atcaaaagat aatttaacaa
      541 ttacagtgtg tgtatatccc tgtcaataac agaaaaataa aattgaacta aggatatttt
      601 atgccgtgga taagtccgat atgtgtcttc aaaatgaaca cggttcatgc gaaggcataa
      661 tactagagat aataaaggga tcgaaaataa caaagttctg taattgttca tgtcataata
      721 atatgtatca gctcattaga aataccctag caatcgttaa tcaaagaaat agctacatcg
      781 attatggtgg atttcctgat agactttaat attaatgaag tgtaattttt agtttagcag
      841 aattatataa tgcattgtat aatatatcaa ggcaaagtga gttccttaca caagcggata
      901 atacttcttg ttctcccttt aaattaaata gagaaaacta cgaaagacag gcagtaccat
      961 ctttaaataa atgaatggtg caggtcctat tctaaatata ataataatta ttcttattcc
     1021 aagttttcaa gacattgtag taaaagatta cgacctcttt tcataaccca catcgggaat
     1081 tcgtctaatc taaatatgtg ttgttgctga aatgtaggag gaataaaccc accgtaagta
     1141 aacacttgca caatagcgtt tttctcgcta actgtggcaa cttcttcttc tgctgcggcc
     1201 tcattttctt ctataatatt tctatataac aaaatcggtt tacctgttct attagcatta
     1261 gcagctgcct tgccaagttt atctttgagt cgttcaatca tccattcatc taaagttact
     1321 tgcttttcat caaaagttaa ctgcttgttg gccatgacca attattcaat atatttacta
     1381 tttataatac agtatgtgaa aaaaatttga caaagcaaat agatttactt tactttctac
     1441 agtaggctgc ttttctcatt attctattct atactgacta atgtatattg ctgtttgcct
     1501 ggaatcgtaa ttgatttatg tatatataat tttataagag agaaatccat gaccattcct
     1561 ttattgtatt gaaattttga gttttcgtcc ttcaagatct attaacttgt agtctatttt
     1621 ttcttcttca attacatctt tcgttaatac aatggatttg actcttacaa gatacttcag
     1681 ctcatccttc aacggagaca gaaaagaaat ttcttcatca tataaatctg ctacaaaagc
     1741 tgttgaaagt gtatctgttg gattatatcc acactccttt cgtaactgct gtaggtttct
     1801 cgccagatct cttaagaagc ctttagctgt taattccttg tcacgttgtg tggaaataaa
     1861 aaccataaga ttgtctctct ctgacatgac gtatccttct gagactatgt atgatagttt
     1921 taaatcatct gccgagagaa ggaactctcc tccaccttca tatacaagcc taaatgtccc
     1981 ggcagatgat gacttcagag ctttgagcaa ctctatcttg tcgagtttct caaatgcaag
     2041 tattacttta tcaatattgc cttttacgct tggtgcgata tttttcctaa tcaactcgat
     2101 cttaggaaca attggcaatt tcttttctaa gagactcaat agttttacta gttctgtatc
     2161 ttcatgaatc tcaacaagag tataattttc aacatttagt tgatttttta ttatatttga
     2221 aattccatcc acagaaagaa atgttaaatc cgggctacaa ataatagcct ccttcattgg
     2281 ccatcgtctt tttagttgaa ccttcattct cgcagcattt gcaagagaga ttacttcttt
     2341 tgatttgtca aaagcttctt ctatcattct gttaactagt tgtccttcat attttggcca
     2401 gcgttcaagc aggatagtac tctttattag atatggaaag caacgtaaat agagatagtc
     2461 tgtaataaat ggcgagtaag gatgaagcat tatatctatc tgcatgagcg aataggacaa
     2521 tatcgaatag attgcaaatc tgcggttaac accctctgga ctatcatccc aaatatcatt
     2581 tctggtaaat gggatatatg tttggctcaa ttgattaatt ataaattctt cgattgcttt
     2641 tgcaccttca ttatatctac atccttcaaa tgctattgtg acctgcgata tcaggtgctg
     2701 taactttgat aaaagccata tctccggtaa agtcaataaa ttgttgtcta acacccaagt
     2761 aagattgtgt ttattttggt caaatctatc aaagctgcta ttttgtttaa aataagtgtg
     2821 caagtaatac aaggtgctca taacctgata gggtcttttt tccatttctt taaggctaaa
     2881 gttcaatgat tcgattggag aggacttcca cataaaataa aatctgacta aatctacaga
     2941 attttctcta agtaagttgt atgcatcaat tacgtttccg atacttttgc tcattttatt
     3001 tcctttatca tctagcacgt gtccttggaa tagaaatgat ttgaatggcg caattgcgca
     3061 ttgttgcaat atcacatttt ccattaatag agtgtacgcc caaccccttg tttgatctat
     3121 tccttcagtt agaaaggaag caggaattag attctgatat tccacatcac tgagcgaagc
     3181 atagggagcc ccaccactat tatgccatgt atctagaaca taaggttctc tttgcatgtt
     3241 ttctttacac ttgtcacatt tcattataat cctgtcaatc caaggcctat gaagttcaaa
     3301 gttgggacca tcaggaagat tcgttgcctt ttttatgatt tcatctcttg agaataatgg
     3361 aactttgtgc ccgcattgag aacacgacca aattggaaga ggagtgcccc acacacgctc
     3421 ccttgatata caccaaggta ccttttcctt tataatttca gaaaatctat ttttaggagg
     3481 ctcgtaaaaa tattctacgt tctgtgctgc ttctaatggc agatcgccaa gtttctttat
     3541 aatataaaaa tattctcttc tggcaatcca gaccagtttg tgatgagaac gccagcaagt
     3601 tggatactga tgttttatcg tacctgattt aatagcagca cctgcgtctt ccattgcttt
     3661 aattattgtg cggtcagcat ctctgacaaa aatatcttta aattctcctg ctttttcggt
     3721 aaaaaaagct ctatcgtcta ttggtacaaa tattggcaca ttcctttttg tggcaatgtc
     3781 aaaatctact tcaccatttg ctggagatag atgaactatg ccgctgccag ttgcaactgc
     3841 atctacaaag tcttctgcta cgacaaagtg aatagatcct tcttttgcca agatgtcaag
     3901 ttctggtatc aaattaagta aaggatgaat gtaatacttg ccatcaagat ctttaccata
     3961 aattgtcttt tcgattttga attgttaaat tctgagctgt ttcatcaaat cctgtaatcg
     4021 cgcttctgaa acaatccact tttcttcttt gccgtttttg tcgtttttta ctattacata
     4081 tacatattta gcttctgggt tgactcctat catttcatct gtaacgactg taaaaggcat
     4141 agtagtccag acaatgagat atgcatcttc tgaggttaat ctgactttat aatagaaaga
     4201 tggatcctcg actatttcat atccttggtt aacctcagca ttactaagag aactttgaca
     4261 tgacggacag tatgcgacaa ccctaaacca ttcctgtaat attccattct cccaagcttt
     4321 ctttaagtat tgccattccc tttcaatata tttgtcagaa aaagtccagt atgcattttc
     4381 atagtcaaat gacataccta gtaatttgtc tgcgctaacc catttctcat tataatatga
     4441 aattaatttc ttgcatgttt cgacaatttt ttcgattcca actttcttaa gattatctgt
     4501 tttacttcct gtcaatccta attccttttc agcctgcaat tctactggaa gaccttgagt
     4561 atcccagcca gctctaaaga tcaccttctt tttttgtaaa gtattgaatc tataccagac
     4621 atctttaatt acgcgtcctc ttaaatgtcc tgcatgtggt tctccattca gggtgggagg
     4681 accctcgata taacttacta tatcattatt attgttatca aaaagctcat ttttcaaaag
     4741 ggttttcaga tttatcttgt ctaaataact gcgaatctca ttttcaaatg ccttagcatc
     4801 aaatttgcct tgaagtgcca tttattatta taccaaagcc actcttatct tatgacctgt
     4861 atttatattt agtatctata ctctctctct ctctctctct tacatggcaa ggatagcaat
     4921 aaagactggc acaaatacta ttgcgactgt atttagcaac ttgattacag tatttagagc
     4981 tgggccagcc gtatccttat acggatcgcc gattagatcg cccactactg ctattgcatg
     5041 agcttgagtt tttttctttc cc
//
LOCUS       DATAAS010000018         2480 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2711534, whole genome shotgun sequence.
ACCESSION   DATAAS010000018 DATAAS010000000
VERSION     DATAAS010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2480
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2711534"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(299..619)
                     /locus_tag="VHF08_00230"
     CDS             complement(299..619)
                     /locus_tag="VHF08_00230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067109.1"
                     /translation="MSAKKLIDIESITIAAFLVLLIAMLVDPFEYIYQLTYAQDSSSG
                     SYSAGYDRGYEDGQNHPINEQIRDGKSGHNEQYRSGYLDGFLDGCLSVEANDEDICNS
                     AMDA"
     gene            1070..1666
                     /locus_tag="VHF08_00235"
     CDS             1070..1666
                     /locus_tag="VHF08_00235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067110.1"
                     /translation="MLRIACPLDSIAIKIVCTLFLGVFSLLALTGHLALEVSAQHHGA
                     PPPLASIGDRKVSLNFETNPNPIIIGQDINMKIAFVDENAKKNVNHVTFRMDISKDGK
                     HFLSEFFHSHEGEVNLLFRDTASKATSSSDTYSVGASSDILTNAWIADPGSPITVRGG
                     GIFSQPGTYKALVELTTIDNDKTDLPQPIPYGFNISVS"
     gene            complement(2074..>2480)
                     /locus_tag="VHF08_00240"
     CDS             complement(2074..>2480)
                     /locus_tag="VHF08_00240"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2067111.1"
                     /translation="VEADKVRIYQVIANLLNNAIKFTKEGAIVVSAKVTQKSGGNKEE
                     EEEDGRDHGGDGGSSSSSRHVIVSVKDSGVGIDPEILPRLFTKFATKSDKGTGLGLFI
                     SKSIIEAHGGRIWAENNPDEKGATFAFNLPID"
BASE COUNT          792 a          435 c          377 g          876 t
ORIGIN      
        1 ggcaatgata atcccgcaac aagtaacatt atgctgataa ttgttgctat tgttattact
       61 attgccattg tgaaaatatc cgttatacta tttatggtta tatatattat ctataattaa
      121 acgttccttg ctatggttaa caatttaatt aattgtgatt ctaaccttaa taatagacct
      181 attatggata ttccgtagga atactaaaag aagaagaaga gagtttagac agacagataa
      241 aacgatctaa ttaggaagaa cagatgagaa gtatatactc agtattgtca gatttccgtt
      301 atgcatccat tgcagaattg caaatgtctt catcatttgc ttctacagat agacatccat
      361 ctaggaaccc atctaaatag ccgctacgat attgttcatt atgtcctgac ttaccatcac
      421 gtatttgctc atttattggg tggttttgac catcttcata acctctatcg tatccggcgc
      481 tatatgaacc gctactacta tcttgagcat atgttaattg ataaatatat tcgaatggat
      541 ccactagcat tgctattaat aatactaaga atgcggctat tgtaattgac tctatatcta
      601 tcaatttttt tgctgacatt atgatatgtt gaccatcgtt aaagaaaata tataatattt
      661 ttcttaagag ataatttttc ttgcctggta aagtgccatg agttagagta atcgattaat
      721 aataataatt ggaagagtgg acatgtttat caatgaaagt attgtatagt tctcatattt
      781 tggtatgtga taaagagctt ttgaatgcag ccatttcgaa tattcagtgg acactgataa
      841 ttttctattg ccgccaatgt atatttttct tctttattcc aatgtcatat tcctttgtta
      901 gttttctatc aaaaggatta ttctgattat actactacaa gtttcttatt attatagaga
      961 ttttgtatct ctacagtatc aaactatgca aacatccatc tattcttaga attatctaac
     1021 tcctgtatgc aaatattgaa ataagaaata ttccatctgt aatttgttta tgcttaggat
     1081 tgcttgccct ttagacagta ttgcaataaa aatagtatgc acattattcc taggggtatt
     1141 ttctttactg gctctaacag gacatctagc tttggaagtt tcagcccaac atcatggagc
     1201 accacctcct ttggctagta ttggtgatag aaaggtttca ttgaatttcg aaactaatcc
     1261 aaatcctata atcataggtc aagacataaa catgaagatt gccttcgttg acgaaaatgc
     1321 aaaaaagaat gtaaatcatg tcactttcag aatggacatt tctaaagatg gaaagcattt
     1381 tctttcagaa ttttttcata gtcatgaggg agaagtaaac ttattattta gagatactgc
     1441 cagtaaagca acttcttctt ctgacacata ttcagttgga gcaagctcag atattctgac
     1501 caatgcatgg atagcagacc ctggaagtcc aataacagtt agaggaggag gtattttctc
     1561 acagcctggt acatataaag cgctagtcga attaactaca atcgacaatg ataaaacaga
     1621 ccttccgcaa cctatacctt atggatttaa catttcagta tcataacaat gttgtctctc
     1681 ttttttatta ttatgacacc aacaaataga cacgcacaat ctacaagaag tggttcggat
     1741 caactaagta aatattttta ttgaaattag agttcacagc taaggaagaa ctttgataat
     1801 aatacattga ctttagtacc aagcatacaa aacgggcata tatttttcgt aatttagcct
     1861 ttattttcac tagtgagcag aaccaccata aatccaagaa atatttggta tctatgtggt
     1921 ggatgtgtga cagatttgac tctattttat cacttaggat tcattttatt tatagaaata
     1981 cattcccaga atacaaaaaa tgaggacaga gaaatagata tcacagatgt atattatatc
     2041 gttttacaaa tgttggagaa tttcttttat tcattaatcg atcggtagat taaatgcaaa
     2101 ggttgcacct ttttcatcag gattattttc ggcccatatt cttccaccat gggcttcaat
     2161 aatgcttttt gaaataaaca atcctaatcc agtaccttta tcagattttg tagcaaactt
     2221 tgtaaatagt cttggcaata tctcaggatc tattcctact ccactatctt ttacactcac
     2281 tataacgtgt ctagagctac tactactacc accatcacca ccatgatctc ttccatcttc
     2341 ttcttcttct tctttattcc caccactctt ttgtgttact tttgcagata ccactatagc
     2401 tccttctttg gtaaatttta tagcattatt tagtagattt gcaataactt ggtatattct
     2461 tactttatct gcctctacga
//
LOCUS       DATAAS010000019         3100 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3791475, whole genome shotgun sequence.
ACCESSION   DATAAS010000019 DATAAS010000000
VERSION     DATAAS010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3100
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3791475"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(753..1646)
                     /locus_tag="VHF08_00245"
     CDS             complement(753..1646)
                     /locus_tag="VHF08_00245"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2067112.1"
                     /translation="MKVRYPVLRVKNIDSVLRFYEKCLGLHVNRRYQDGDDGNLVYEL
                     GFKLKFLLSDDPILILQHDPNAKNAPQRSAGLYHFAILVPDRRSLASTYLAIRNSGVQ
                     YDGFADHLVSESLYLRDPENNGIEIYRDRQATEWPHDREGHIKMDTLPLNLNSIVSEL
                     NKEEKETAKAFPIGARIGHMHLRVTNLERSIKFYHEKIGLDITSDWSSMGASFLSAGG
                     YHHHIGMNTWHSLNGKVHCRGDTGLENFTITIPDRTSFDTIESIINRHASSEQQPKQM
                     TDKNQFMLFDPDSIQIVFKLE"
     gene            complement(1913..>3100)
                     /locus_tag="VHF08_00250"
     CDS             complement(1913..>3100)
                     /locus_tag="VHF08_00250"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEX2067113.1"
                     /translation="GAFGCGVFKALANNNIKVDIIAGTSIGGINAAIIAGSKDAKHPE
                     HLLEQFWLELSESFVDFDKVTLPSSSYLSTFVEQLLLPPINYYHYFHTSSPSKQEKNY
                     STTTTNTNEYAIKMKQLRSFYSSAMFGNDKMFKPRWRLETALTDPDYFAPQNWTYMYD
                     HRPLVETLEKYIDYDKLKPNGNPNAPRLILTAVNILTAGPLTFDSSKQQITPKHILAT
                     SAYPLYNFRWIEVEDGVYAWDGSLLSNTPLREVIDASPMNDKRICIVENYPKRVDTLP
                     KNLPEVYHRARDIMFSDKTEHSVTMSKAITRYLRYIEELYQLIENNMDLTKVDPKQLK
                     RIRKKYKKYKQERGAEIKDIVYITRDEPFPHMYENADFSPETIKNSIKEGEMKTIQAL
                     KGR"
BASE COUNT          900 a          548 c          542 g         1110 t
ORIGIN      
        1 agatactaaa atgctagaat aaaatatttt attatctttg tttcccttca aatatactgt
       61 tgctgtctgt attttgtttt tcattcttgt tcattatttt tcttcctggg tctaaattct
      121 aattctactc cgcttttatc attataatta aagataaatg ctttattggg taaaaaggaa
      181 aggttgagat ctttgcgttt aaacacatat acatttctct gtaggtaatc tagaattgtt
      241 tgggatgtta cagcttcaat gaatcattga ctaatttcaa gtgaaaatgc ataagccaaa
      301 cgaaatgagt tacaaagcat atccagattt gaaagacgaa gtaattacag gacttgcagc
      361 tctggtagaa ttcattatat gacttctttt agagcggtat agtggtgcac gtttctgttc
      421 ttaccaattg gaataatatc acttctcagc ggtggcatac ttatgtcggt ctacatggta
      481 aaacaaaatg aaggtcttgc tatagcagcg gtggcatctt agtagtagag aagtgattaa
      541 aagtgggatc gtatctattt ttgtgttcaa catcattata tcatcataag gaagcaggaa
      601 aatagataac aattcatcca tatacataga gaccttttcc agttatctat tcatatccac
      661 atcactcttc tattaaatac atttcatgta tagacatatt actctcacag caactctatg
      721 ggatgacgtg tatggtcata gatagacaat aattattcta atttgaaaac aatctgtatg
      781 ctatctggat caaatagcat gaattgattc ttgtcagtca tttgctttgg ttgttgttca
      841 gaactagcat gacgattaat gatagactca attgtatcaa aagatgttct gtcaggtatg
      901 gttattgtaa agttttccag cccagtatcg ccacggcaat gaacttttcc attcaagcta
      961 tgccacgtat tcattccgat atgatgatga taccctccag cggaaaggaa ggaagcgccc
     1021 atagagctcc aatctgatgt tatgtctagc cctatttttt catgataaaa cttgattgac
     1081 ctttcaaggt ttgtaaccct aagatgcata tgtcctattc ttgctccaat aggaaatgct
     1141 tttgcagttt ctttttcctc tttattaagt tcagatacaa tggagtttag attaagtggt
     1201 agagtgtcca tcttgatatg tccttccctg tcatgaggcc attcagtggc ttgtctgtcc
     1261 cggtagattt ctatgccatt attttcagga tctctgaggt ataatgactc acttactagg
     1321 tgatctgcaa acccatcata ctgtaccccg gaatttctaa ttgcgagata agttgaggca
     1381 agacttctcc tgtcaggaac aagtatcgca aagtgataaa gtccagctga acgttgtgga
     1441 gcattttttg cattaggatc atgttgtagt ataagaatcg gatcatcaga taagaggaac
     1501 tttagtttga aaccaagttc atatactaga ttaccatcat cgccatcttg atatcgtctg
     1561 tttacatgca atccaagaca tttttcatag aacctcaaga cactatcaat attcttgacg
     1621 cgtaatacag ggtatcgaac cttcatacca ctgtgcatct tgaaactaac caaacagtga
     1681 tcccacttct tcttttatgg ttttacgtta tttatatgta gaatataact aataaaaaat
     1741 gaaataaaaa ctagacttac tttcttgaag acagtaaagg tgtcaatatt gaacttaatt
     1801 tcaatcaaag cttctttagc aaagttaagg aaagtttttt gatcatggtt gttcctcaac
     1861 aagagtgcca accatcagca tcgtcatatg taataggaat ttactataga tctcatcgcc
     1921 ctttcaatgc ttgaattgtt ttcatttctc cttctttaat tgaatttttg atcgtctctg
     1981 gtgaaaaatc tgcattttca tacatatgag gaaaaggctc atctcgggtt atgtaaacta
     2041 tatcttttat ttcagctcct cgttcttgct tatatttttt atattttttg cgaattcttt
     2101 taagctgctt tggatcgact ttcgttagat ccatattgtt ttctattagc tggtaaagtt
     2161 cttcaatgta acgcagatat cgtgttattg ctttagacat tgttacgcta tgctctgtct
     2221 tgtcagaaaa cattatgtct cttgctctat gataaacttc tggtaggttc tttggcagtg
     2281 tatcaactct ttttggatag ttttctacta tacatattcg tttatcgttc atcggagatg
     2341 catctatcac ctctcttaat ggagtgttac tcagtaaact cccatcccat gcatatactc
     2401 catcttctac ttctatccaa cgaaagttat acaacggata agcagatgtt gcgaggatat
     2461 gttttggtgt tatctgttgc ttagagctat caaatgtcag tggacctgca gttagtatat
     2521 ttactgcagt taagatcaaa cgtggtgcat taggatttcc attaggtttc agtttgtcgt
     2581 aatcaatata cttttctaaa gtttctacta aaggtctatg atcatacata taagtccaat
     2641 tttgtggtgc gaaatagtct gggtctgtta gagcagtttc cagtctccac ctaggtttga
     2701 acattttatc atttccaaac atagctgaac tatagaatga ccttagctgc ttcattttta
     2761 tagcatattc atttgtattt gttgttgttg ttgaataatt tttttcttgc tttgatgggg
     2821 agctagtatg aaaatagtgg taataattaa taggtggcaa taatagctgt tctacaaatg
     2881 tggatagata agaagaagaa ggaagagtaa ctttatcaaa atctacaaag ctctcagata
     2941 attccaacca gaactgttct aggaggtgct ctggatgttt tgcgtccttg cttccagcta
     3001 taattgcagc atttattcca cctattgatg tacctgcaat aatatcaacc tttatattgt
     3061 tattggcaag tgctttgaat actccacaac caaatgctcc
//
LOCUS       DATAAS010000020         2500 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4872765, whole genome shotgun sequence.
ACCESSION   DATAAS010000020 DATAAS010000000
VERSION     DATAAS010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4872765"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            105..1043
                     /locus_tag="VHF08_00255"
     CDS             105..1043
                     /locus_tag="VHF08_00255"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HEX2067114.1"
                     /translation="MICEANRRIEPIRVSREKQQQHYFKYINKLFHIFTENIKTRTAP
                     IYCFPVATFITVILGAQGNVDPFLVISTVIGSYFLGLATYVYNDLTDFEVDKINKIRR
                     PLVTGQTTKSQLLTIVCILFGIGLSLTAFINYYTLCISSFFTVLGIVYSHPRFKLKDK
                     FLLKTVVTAAGAALLSLLGGAAVADLSLPILYTSSSFFIFYFILSPLGDIGDIKGDRA
                     AGRRTFPIVIGMKATLLIMFSVPCILMTLTGLTYGVLHMNILGVYAIITNCLVITIVI
                     LHMSSRLNDSSTIKLMRSKMRYLNITMQISMLLAFL"
     gene            complement(1046..2005)
                     /locus_tag="VHF08_00260"
     CDS             complement(1046..2005)
                     /locus_tag="VHF08_00260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067115.1"
                     /translation="MISLPALLAIPALEKASFESTAKLLSVLSKKNNLTLFISAKNGL
                     LADSSSPHKAGLSKKIYYTSLKQLMNSGLIIKTGGKYLHTSLGSIIYEAHILKLTEQM
                     RNTKHLRMIDTLKHSGGFSDADIEKFMSNLTGVRTSSPDIPPKIEMVWTYEDMVSAIV
                     ERTEFCRNEILLASRYFNEIIINSILRKAKLGLDVKVIAEKSLVTQFFEQNNHMMLND
                     KNSLERSNVVGNPWYPGKIDRRVGNVPFSIIIFDRKEVGIEFIDANKPETFKSAIFIR
                     DEPISKIIMEYFQKMWTSNSDDTTITTTTESSVSSRYMQRTEV"
BASE COUNT          782 a          443 c          405 g          870 t
ORIGIN      
        1 tataaaccaa actttcaaaa atcactattt acatagtctt atagaattgc tacgatgaaa
       61 tttgtggaat atttcgtaaa aatcccaaaa ggaggtaaca aatcatgatt tgtgaagcta
      121 acaggagaat agaacctatt agagttagca gagaaaaaca acaacagcat tattttaaat
      181 acatcaacaa gcttttccac atttttacag aaaacataaa aacacgcacg gctccgatct
      241 actgctttcc tgtcgcgacc tttattacag taattctggg agcgcaagga aacgttgacc
      301 catttctagt catatctaca gttataggaa gctatttcct cggccttgcg acgtatgtgt
      361 ataatgattt gaccgatttc gaagtagaca aaataaataa aatacgtaga ccgttagtta
      421 caggacaaac aaccaagtca cagcttctta ccatcgtgtg tattctgttt ggtatcggat
      481 tgtccttgac ggctttcatt aactattata ccttatgtat ctcaagtttc ttcactgtat
      541 taggtattgt ctattcacat ccccggttca aattaaaaga taaatttctt ttaaaaacgg
      601 tcgttacagc cgccggtgca gctttattat cgctattagg cggtgcggct gtcgcagatc
      661 tctccttgcc aatattatat acctcatcgt ctttttttat cttttacttc attttatctc
      721 ctctgggaga tattggagat ataaaaggcg acagggcagc gggtagacgt acatttccaa
      781 tcgttattgg aatgaaggcg actttgctaa ttatgttctc tgtgccatgc atactaatga
      841 ctttgacagg gctaacttat ggcgtcttac atatgaatat actaggagtc tacgctatca
      901 ttactaattg tttagtaata acaatagtga tcttacatat gagtagcagg ttgaacgata
      961 gttcaacaat aaaattaatg cgatctaaaa tgaggtatct gaatattacg atgcaaatat
     1021 cgatgctttt ggctttcctt taattttaga cttcagttcg ttgcatatat ctgctgctca
     1081 cactgctttc agttgttgtt gttatcgtcg tatcatcaga attgctagtc cacatttttt
     1141 ggaaatactc cattattatt ttagatattg gctcatctct tatgaaaata gcacttttaa
     1201 acgtctctgg tttatttgca tcgatgaact ctatccctac ttccttacga tcaaagatta
     1261 tgatgctaaa tgggacgttt cctacccgtc tatctatctt gccaggatac caaggatttc
     1321 ccactacatt tgaacgctct agtgaatttt tatcatttaa catcatatga ttattttgtt
     1381 caaagaattg tgtgactaat gatttttcag cgatgacttt tacatcaagt cctaatttcg
     1441 ctttgcgaag gatactgtta attattattt cattaaagta tcttgatgca agtaaaatct
     1501 cgttcctgca gaattcggtg cgttcaacta ttgcagatac catatcctca tatgtccata
     1561 ccatttcaat tttcggtgga atatcgggac tagatgtgcg aacaccagtt agattactca
     1621 tgaatttctc aatgtcagca tcagaaaaac caccactatg tttcaaggta tctatcatcc
     1681 gtaagtgttt tgtatttctc atttgttcag tcaattttag aatatgtgct tcataaataa
     1741 tggatcccaa tgaagtatga agatattttc ctccagtttt tatgataagt ccagaattca
     1801 taagctgttt taagcttgta taatatattt ttttagaaag tcccgcctta tgaggtgacg
     1861 acgagtcggc caacaagccg tttttagcag atataaataa cgttaaattg ttttttttag
     1921 ataaaacaga taataacttt gcagtacttt caaatgatgc cttctctaag gcgggtattg
     1981 ctaacaaagc aggtaaacta atcatcaatg ttttatatat atattattat ctattaaata
     2041 acaatctcag aattttaatt actaatagag caagtgatag taatagaatg gaagtatctt
     2101 ctgtaaactc atatctgggc gttttttgga taaattagag tttatgaaat catgaatgat
     2161 tgtatatacg tattgcaggc tataaattgg tcttttctta cttttttata tttttaaaaa
     2221 cccctgactg ccttctataa tgtctgcata caggctgtat caggcaaata gtcaggagaa
     2281 tacgttattt tcacatatac atatgatgta aagattaaaa gatgccttct gaagactgat
     2341 tcatacaaca atccttgagc aaaattgaaa accaatatac cacatgagat aatgtacata
     2401 aaaccaaaaa atattattta ttattataat tcatgtcttt gtcttacctc ctaatgataa
     2461 aactagctac gtccgtatct aatagatgat aattaacttg
//
LOCUS       DATAAS010000021         1707 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_12906, whole genome shotgun sequence.
ACCESSION   DATAAS010000021 DATAAS010000000
VERSION     DATAAS010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1707
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12906"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..660)
                     /locus_tag="VHF08_00265"
     CDS             complement(<1..660)
                     /locus_tag="VHF08_00265"
                     /inference="COORDINATES: protein motif:HMM:NF013832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067116.1"
                     /translation="MLKITKLSKSSAIYFLLIFAPIAVALEFAKAADHLILFVISSLA
                     LIPLAKLIGDSTEHLSTHYGTTLGSLLNVTFGNAAELIIATVAISAGLLDLVKASITG
                     AILGNILLIFGLSILVGGFKYKEQVFNRENAGFQSSMLFLAIIGLAVPTILFSTALAP
                     VEVENQTNIQILSDALAFLLLAVYVAGIIFTFFTHRHLFVQAHSEEHDGEQNHKHWTK
                     KK"
     gene            926..1225
                     /locus_tag="VHF08_00270"
     CDS             926..1225
                     /locus_tag="VHF08_00270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067117.1"
                     /translation="MKIRVYFCKESDPEILFKDDKISKQALDTIYDLVWESEFKNIVN
                     VGKVWLKFNEEDLKPFGIPLEKKRSHRRISAGDIIQMGTEFYMVKQIGVKKINLL"
     gene            1328..>1707
                     /locus_tag="VHF08_00275"
     CDS             1328..>1707
                     /locus_tag="VHF08_00275"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family phosphatase"
                     /protein_id="HEX2067118.1"
                     /translation="MKGIIFDMDGVLVDAMPYHCKALQIAIKQMTNIDIDDRTIFLLE
                     GMPADEMIKEIFRRKGYDNNPYYFSIVDKIHNLKKEILKQILIVKPINGVRELIRELD
                     CLKAIVSGAARQEVEDIIHKTFDR"
BASE COUNT          610 a          237 c          297 g          563 t
ORIGIN      
        1 ttttttcttg gtccagtgtt tgtgattttg ttctccatcg tgttcttcgc tatgtgcttg
       61 tacaaataga tgtctgtgag taaaaaatgt aaatattatt cctgccacat acactgccaa
      121 taacagaaat gcaagagcat cacttaagat ctgtatattt gtctggtttt caacctcaac
      181 tggtgctaat gcagtactga ataatatcgt aggtactgct aatcctatta tagccaaaaa
      241 caacatagaa gattgaaatc cagcattctc tctgttgaaa acctgttctt tgtatttaaa
      301 cccgcccaca agaatactca gtccaaagat taacaggata tttccaagaa ttgcacctgt
      361 aatcgatgct tttacaagat caagcaatcc agcactaata gcaacagttg caattattag
      421 ttctgcggca tttccaaaag ttacgttgag taaagatcct agtgtagtac cataatgggt
      481 ggaaagatgt tcagtagagt caccaattaa ttttgccagg ggaattaatg caagagatga
      541 gattacgaat aagataagat gatcagcagc tttagcaaat tctagtgcta ctgcaatagg
      601 agcaaagata agaagaaaat aaatcgcaga ggattttgac aatttagtta ttttaagcaa
      661 gaacaatgtt cattcgcttt ataacatata atttttttgg attttattat tgttctcaac
      721 tgtcaacttt aatatgaatt ttaagtagct gaatttaaca tacattataa ttgtttttta
      781 ttgacgctca atcagtcatt tcttagcata tactaccatg tcatcaaaat tgttatttct
      841 gtttcttgta ttatatatat atctagtccg actatacgag tcaagagaca atagtcaaat
      901 tggtctttct atgaagagat aagctatgaa gataagagtt tatttttgca aggaatctga
      961 cccagaaatc ctattcaaag atgataaaat tagcaaacaa gccttagaca ccatttatga
     1021 tctagtttgg gaatctgagt tcaaaaatat tgttaatgta ggcaaggtat ggttaaaatt
     1081 taacgaagaa gatttaaaac cctttggaat accgttagaa aaaaagagaa gccatagaag
     1141 aatatctgct ggagatatta ttcagatggg tacggaattt tacatggtta agcaaattgg
     1201 agtaaagaaa ataaatctat tgtgaaatta actcctatta tgatatagga atatccatat
     1261 attatattta ttttggaatt ctctactgat gtattaatat aataagcata tacgttattt
     1321 tcattttatg aagggaataa tatttgatat ggatggcgta ttggtagatg caatgccata
     1381 tcattgtaaa gctttgcaga ttgctatcaa acagatgact aatattgaca ttgacgatag
     1441 gacaattttt ttactagaag gaatgccagc tgatgaaatg ataaaagaga ttttcagacg
     1501 taaaggatat gacaataatc cttattattt ctctattgta gataaaattc acaatttaaa
     1561 gaaggaaatt ttaaaacaga tattaatagt caagcctatc aatggagtaa gagaattaat
     1621 aagagaatta gattgtttaa aagctattgt aagtggtgcc gcaagacaag aagttgaaga
     1681 tattattcat aaaacttttg atagaga
//
LOCUS       DATAAS010000022         2395 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4873568, whole genome shotgun sequence.
ACCESSION   DATAAS010000022 DATAAS010000000
VERSION     DATAAS010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2395)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2395)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2395
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4873568"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(175..2058)
                     /locus_tag="VHF08_00280"
     CDS             complement(175..2058)
                     /locus_tag="VHF08_00280"
                     /inference="COORDINATES: protein motif:HMM:NF014763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEX2067119.1"
                     /translation="MQLLSGRIKETVIISIIVIVILSYGLFFYLQSITENNIRFSLFE
                     QQKMRQIDSTQDISEHIGSDISLAVSMLDTLANSFYLQQGDVAGEGIKKLMKQKYTQF
                     NTIIDRLFILDKDDIMVNSFAPLGSETFLGIDFSFRNWVKETRTGLTPVFSNSFERQD
                     VYRIFITYPIVNSETGKYIGLVGVSIPTVNFFAQYGNVRDVNSQFLVVFDRNGIMLAN
                     GASKTLVGKNFFGYETQEFINHNKILNNLTQNLLAGNSGFAVYDYGSGERLTTAYPIY
                     VNNKPTYFIQEVTPTSQIYSQINDVLLTERLKMFSLLAGTTAAIAVLIIFLVKWSSTL
                     GNEVKRRTRQLNVSNQQLYSKTSELKLTNESLIESNKKLELANKQLEVHDKMQKDFIN
                     IAAHELRTPIQPILALAQVLRSRKEKDNNGKEIDEELSLLDAVIRNAKRLKRLAEDIL
                     DVTKIESHSLILHKERFNLNEVILNTVQDIRNEISDGKVKLLYEFDKDSLFIEADRER
                     ITQVISNLLSNAVKFTKEGTISIVLEKKDSKVTFNIKDTGTGIDSEILPRLFTKFATK
                     SFEGTGLGLFVSKSIIEAHDGKMWAKNNDDGKGATFSFTLPLSKQEQEQQQQIRRVEH
                     RNQ"
BASE COUNT          731 a          418 c          341 g          905 t
ORIGIN      
        1 gataaaaagt ataaacacat acttcattct cttgtattat ctttatagat tttaaattgt
       61 ggagattgta taaatatcaa tattaggacc aatgacaatg taaccttgac catctgaata
      121 actgttgtca atctgctata acattatatt ttgtttttac gaactattgt ataattattg
      181 atttctgtgt tctactctcc tgatttgctg ttgttgttct tgttcttgtt tacttaatgg
      241 tagagtaaaa ctaaatgtgg ctcccttgcc atcatcatta tttttagccc acattttccc
      301 atcatgtgct tcaataatac tctttgagac aaacaatccc agacctgtac cttcaaatga
      361 ttttgtagca aatttggtaa atagtctcgg taatatttca gagtctatac cagtacccgt
      421 atcttttata ttaaatgtta ctttgctgtc ttttttttct aaaacgatgg atatagttcc
      481 ttctttagta aattttactg cattacttag tagattggaa ataacctggg ttatcctctc
      541 tctatctgcc tctataaaaa gtgaatcctt gtcaaactca tatagcaatt ttacttttcc
      601 atcactaatt tcatttctga tatcttgtac agtatttaat atcacttcat ttagattgaa
      661 tcgttcctta tgtagtatta gagaatggct ttctattttt gttacatcta gtatgtcctc
      721 tgcaagtcgc tttaatcttt tcgcattcct tatgacggca tctagtaaag ataattcttc
      781 atctatttct ttgccattgt tatccttttc tttcctagat ctaagaactt gggccaaagc
      841 aagtataggt tgtatagggg ttcgtagttc atgagctgct atattaataa aatctttttg
      901 cattttatca tgtacctcta gctgtttgtt agccaattca agtttcttgt ttgattctat
      961 tagagactca tttgttagct tcaattctga agtctttgaa tatagttgtt gatttgatac
     1021 attcaattgc cttgttcttc gttttacttc atttcccaaa gtactgctcc atttgacaag
     1081 aaatattatt agaactgcta ttgcagcagt agtgcccgca agaagtgaaa acatttttaa
     1141 tctttctgta agaagaacat cattaatctg tgaatagatt tgtgaagtag gtgtcacctc
     1201 ctgaataaaa tacgtaggct tattatttac ataaatcgga tatgctgtag tcaatctttc
     1261 accgcttcca tagtcgtata ctgcaaaacc ggagttacct gctaatagat tctgtgtaag
     1321 attatttagt attttgttgt ggttgataaa ttcctgtgtt tcatatccaa aaaagttctt
     1381 tccaactaat gttttacttg caccattggc taacattatt ccatttctat caaaaacaac
     1441 taaaaactgt gaattgacat ctcgaacatt tccatattgt gcaaaaaagt ttaccgtagg
     1501 aattgatact cctactaatc caatatactt gcctgtctca ctatttacta taggatatgt
     1561 tataaaaatt ctgtatacat cctgtctttc aaagctatta gaaaagactg gtgttagacc
     1621 tgtccttgtc tcttttaccc aatttctgaa agaaaaatca ataccaagga aagtttctga
     1681 acctaatggg gcaaaactgt taaccataat gtcatcttta tctaaaatga aaagtctgtc
     1741 gataatagta ttaaattgag tatatttctg tttcatcagc tttttgattc cctcacctgc
     1801 aacatctcct tgttgcaagt aaaaagaatt cgccaacgtg tcgagcatag agacggctaa
     1861 actaatatcc gagcctatat gttcagaaat atcttgtgta gagtctatct gccgcatttt
     1921 ttgttgttca aatagactaa atctaatatt attctcggta atactttgaa gataaaagaa
     1981 taaaccatac gaaagtataa caatgacaat tatagaaata ataactgttt cctttatcct
     2041 tcctgatagt aactgcatac ttttgttcct ggacaaaaat aatggtatgc tatctaatct
     2101 atttttcgtc aaaaatgtta ggatagagta atagttagat atgcatatgc tatttcgacc
     2161 actctaatat agaaataacc acgttgattt attgtcattt ctaatcctcc atagtcctta
     2221 taataatacg tgacgacaat ttaaatctcc taaactatct aatgcattca atagtcatct
     2281 aaagtatgaa attttcaatt atttgtatta atacccgatg ttgcttgcat tcggtataat
     2341 agcaatagct attataccaa atgcaagcaa cattgggtat taatacaaat aattg
//
LOCUS       DATAAS010000023         1563 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4874498, whole genome shotgun sequence.
ACCESSION   DATAAS010000023 DATAAS010000000
VERSION     DATAAS010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4874498"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            285..752
                     /locus_tag="VHF08_00285"
     CDS             285..752
                     /locus_tag="VHF08_00285"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2067120.1"
                     /translation="MANIQYETDINAPVEKVYEYYTNPDNIKESWPRDIVKESESVSG
                     SKSEEGSEMKVKGQYMGKEEEMRLEVAEKEQNRRLVTRQIEGPFKKWESIQEFEGRGG
                     GNSTHIRHSIDYELPTTGKIANMLSGSQADNKIRQGLEQAAQTVKQKLESGQA"
     gene            851..1195
                     /locus_tag="VHF08_00290"
     CDS             851..1195
                     /locus_tag="VHF08_00290"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2067121.1"
                     /translation="MASSHKVEHFEIPADNVENLKNFYTSLFGWQFEKGQTQDYWMVK
                     NAGISGALMQKENPQQISTQFVTVESIEDYINKAKQLGARVIKNKQEISEGYYAVLED
                     PQKNTFGIWQNK"
BASE COUNT          642 a          209 c          284 g          428 t
ORIGIN      
        1 ggactttagt aagggtatgt agtagtagta gttcaggatc aattgattga ttgagtatta
       61 ctatttattc tctactaccc aaattgaaaa tccaaaatag ccacaagata tccaccgacc
      121 cttagaaaaa ttgtggtaat acaaacttta taatttcatg agttctagac attgtcgtcg
      181 agaaattaaa gtccaagcat gaacacctta gatgtaacta gtgcctaacc catattctga
      241 acatagaatc tttatgaatg atataatcca gaacttacag taatatggca aatattcaat
      301 atgaaacaga cataaatgca ccagttgaaa aagtatacga atattacact aatccagaca
      361 atatcaaaga atcatggcca cgtgatatag tcaaagaatc agaatcagtt tcaggttcaa
      421 aaagtgaaga aggctctgaa atgaaagtaa aaggtcaata catgggtaaa gaagaagaaa
      481 tgagacttga agtagcagag aaagaacaaa acagaaggct agttacaaga cagatagaag
      541 gaccatttaa gaaatgggaa agtattcagg aatttgaagg acgtggggga ggaaatagta
      601 cacatattag gcattcaatt gattatgaat taccaacaac tggaaagatt gcaaatatgc
      661 tttcaggtag ccaagcagat aataaaataa gacaaggatt agagcaggct gctcaaacag
      721 taaagcaaaa actagaatca ggtcaggctt agtttagtta attagaataa taatataata
      781 acaacaaaaa caataggaaa aaaacccata taatatatat agattataag aggagatgtg
      841 agaaaagata atggcatcta gtcataaagt agaacacttt gaaattccag cagataacgt
      901 cgagaacttg aagaactttt atacttcatt gtttggttgg cagtttgaaa aaggacaaac
      961 acaagactat tggatggtaa agaatgcagg tataagtgga gcattgatgc aaaaggaaaa
     1021 cccacagcaa atatcaacac aatttgtaac tgttgaatca attgaagatt atataaacaa
     1081 agcaaaacaa ctaggagcta gagttataaa aaataaacaa gaaatatcag aaggatatta
     1141 tgcagtatta gaagatccac aaaaaaatac atttggaata tggcagaata aataaataga
     1201 taaataaatg aataaaaaga gtaaattctt ttttatttat taattaatta ttatataact
     1261 atgactctcg ctttatagta ttcgatagtt gtagaagaac aatatcgtca gcgggttcgg
     1321 tgaaagtaag acagaattga ctcaaatttg tcactcaaac ttttaggata aagagaaaga
     1381 ttagacaagt tagtaaaatg cgttattagc aggctctacg taatcattga tgatatcggt
     1441 gctaaaatat cttcctgcct acagtagcag aaataatctg agctttaaag gtttttctta
     1501 ttagatttat gtggatgata acttttgata tttttttctt ttctaactgt accccaattc
     1561 tta
//
LOCUS       DATAAS010000024         1949 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4874684, whole genome shotgun sequence.
ACCESSION   DATAAS010000024 DATAAS010000000
VERSION     DATAAS010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1949)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1949)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1949
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4874684"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(117..932)
                     /locus_tag="VHF08_00295"
     CDS             complement(117..932)
                     /locus_tag="VHF08_00295"
                     /inference="COORDINATES: protein motif:HMM:TIGR01486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIB family hydrolase"
                     /protein_id="HEX2067122.1"
                     /translation="MTYKVIFTDIDGTLIDINTGEYQGTIKLVCILKNNNIPVILCSA
                     KTWSEQNKIREDIGLNEPFIVENGGALIIPKDYFNFSFNTLISKVKQGYSIIELGKPA
                     IEIRKKLREIRKKYKIDFLGVSDVTLNELAKMTGLSKDYARRMAQREYGETIIKIEKN
                     DLEKFIKIANDMGLKLIQGGRYFDITVGNDKGKAVDILMNLFRKKYHNDVKFFGVGDS
                     ENDVSMLNRMDLPMLVQRPDSSWSNLEVKDIVKIQGIGPEGWKGAFNRIIELD"
     gene            complement(1578..1708)
                     /locus_tag="VHF08_00300"
     tRNA            complement(join(1578..1622,1644..1650,1676..1708))
                     /locus_tag="VHF08_00300"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1645..1647),aa:Leu,seq:cag)
BASE COUNT          638 a          330 c          294 g          687 t
ORIGIN      
        1 tagttttaca gtattgaaaa attaagtatg tattgaagga ttcgaagatg aactcaaatg
       61 actactagag ttactgacag atgattgtgg ttatggatat agcatatcat cagcatctaa
      121 tctaactcga taattctatt gaaggcaccc ttccaacctt ctggacctat accttgaatc
      181 tttacaatgt ctttaacttc aaggtttgac cacgaactat ctggcctttg gactagcatt
      241 gggagatcca tacgattcag catagaaaca tcattttcac tgtcacccac accaaaaaat
      301 tttacgtcat tatgatattt ttttctaaag agattcatca atatatctac tgctttgcct
      361 ttatcattgc cgactgttat atcaaaatat cgtccaccct gaattagctt tagacccatg
      421 tcattggcaa tttttataaa tttctctaaa tcattttttt caatttttat aatagtttcg
      481 ccatattctc gctgagccat tcttcgtgca taatcctttg acaaacctgt cattttggca
      541 agttcattca aagtaacgtc tgaaactcct aagaagtcta ttttgtattt ttttctgatc
      601 tctctgagtt ttttcctgat ctcaatggca ggttttccaa gttctattat gctataccct
      661 tgttttactt tagagatcag tgtattaaaa gagaaattga aataatcttt aggaatgatt
      721 aatgctccac cattttctac tataaacggt tcatttaatc ctatatcttc tcttatctta
      781 ttttgttcgg accaagtctt ggcagaacaa agaattactg gaatattatt gttttttaag
      841 atgcaaacca attttattgt tccttgatat tcgcctgtgt ttatatcaat taaagtacca
      901 tctatatcgg tgaagatcac tttatacgtc atatctacat aaggtgggta gtacgaattt
      961 gttaatttat cgatataaat cagataaaaa tactttggaa tcaaaataag agcattatat
     1021 catcgtatta acaatatact aagactattt tatcagtcat catatgatat gagtgaaaag
     1081 caaaagaagt agtagtactc tacaaaataa gaaaaacata gaacgatacc ttttttcaga
     1141 taatagaatt ttataacttg gcagagatca attaagttca tcagagtaag aagttagatt
     1201 aaatattatg gaattaccat tattacagtg aacggcatat gtctctttat cacttgggtc
     1261 tattctttca gatattggta caaattttga taaatacaag cctttcagta gagtccaaaa
     1321 tcaaatctgc ttgttttcac taaaagatca agttataaca tgacgtggca gcttgaagat
     1381 ttgaatattc agttgataat ataacaaaat gctaattgac agtaatgacg tcattagctg
     1441 aggaagatgt aaacaaatct aactatagag tttcttattg ttagcgagtt atacctacaa
     1501 ttattataat tataatatat ataaaatttg caaataaagt tcttttaaac tataaacaac
     1561 agatataata gtaaatatgc gggaggtggg atttgaaccc acgaacccct gagggatgag
     1621 gtgacccagt caaattatcg acatctgagc atcgtgccag acaaatctgc ctgatctcac
     1681 gccgttgacc gggcttggca acccccgcga tagattgcta tgataatata ctacaattta
     1741 tacctgatga gaataccgat atatgtagta ctgcaagtgt tatttacaga gtatgtattg
     1801 ggagcattat atttagcaca tcctttacag tttaatattt ttatttattg cccattttta
     1861 gaactctaat aaccttattt agtatctctt attaccaatt cgtatggcat aatatgtcaa
     1921 ttaatagctg tgttattata tcacccacc
//
LOCUS       DATAAS010000025         3814 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_15905, whole genome shotgun sequence.
ACCESSION   DATAAS010000025 DATAAS010000000
VERSION     DATAAS010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3814
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_15905"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            311..1051
                     /locus_tag="VHF08_00305"
     CDS             311..1051
                     /locus_tag="VHF08_00305"
                     /inference="COORDINATES: protein motif:HMM:NF014075.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-hydroxymethylpterin diphosphokinase MptE-like
                     protein"
                     /protein_id="HEX2067123.1"
                     /translation="MKFIDWFPYYQNIRQQFGYSTEKDQEAAYYLSRLIKRKALAPKV
                     LHKKIAGKQVLVIGAGPSLEKNIIFIKKSRKFVKIVSDGAVQALIENNIKPDIVVTDL
                     DGNQSFLQKAEKMGALMVVHAHGDNIQILRKLVPRFRHIIGSTQVMPVENVYNFGGFT
                     DGDRSVFLAEEFGAKEIILIGMDFGIHIGKYSKKVVEDVELKKKKLRAGKHLLEMLAK
                     QSRSRLFDTSKRPIRGFTSFYDITINND"
     gene            1053..1220
                     /locus_tag="VHF08_00310"
     CDS             1053..1220
                     /locus_tag="VHF08_00310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067124.1"
                     /translation="MFGQRQAIGILGMIFAIVGGIAWFFQQTFFAIMLWGAAGIILLK
                     LNKKNQRRAKR"
     gene            1266..2003
                     /locus_tag="VHF08_00315"
     CDS             1266..2003
                     /locus_tag="VHF08_00315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067125.1"
                     /translation="MINLKYYYTIYVKDALQMSNFSEDDVRRAAEIREWLVKQISDRQ
                     EEIERLRTTLLLIDNLLKHGSFRPASNITSSVTLSHSASAEAPVNAAKISSNPIKQQR
                     TATSADSMAETITNSSEPQATNEVKEFRPLKRVKDNLLLANAELLPNSVEIVPAEGII
                     LNVNTPPFRSFFLNRILEGMKTKDAEKVSQKQIKDTESLNYQVEEDTNGSIKKIIIIN
                     YREKERLNEIFNTSTWVFTRMIEKSGK"
     gene            1993..3543
                     /gene="guaA"
                     /locus_tag="VHF08_00320"
     CDS             1993..3543
                     /gene="guaA"
                     /locus_tag="VHF08_00320"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEX2067126.1"
                     /translation="MENNRNMDKIIVLDFGSQYSHLICRRIREVNVYCELLPYNTQAK
                     VLKELNPKGIIFSGGPASIYSKDSPKPDKDIFEMNIPILGICYGQQVLINNFEGTVKR
                     SSIREYGRAELVIDDKSDLFKNIEKNIKCWMSHGDAADKLPKGFKVIAHTDNSFSASI
                     ANQQKKFYGIQFHPEVVHTEKGIDILKNFSQNISMAKADWNMENFIDIAIKDIRKHVK
                     NEKVLCAVSGGIDSTTVAALLHRAIGDSLHCVFVNHGLLRKDEENLVSKLFKEHLGIQ
                     VIYIDAEKQFLQKLKGIKDPEKKRKIIGEEFANVFVDVANKYGPFRWLAQGTLYPDVI
                     ESGVSRGPAAVIKTHHNVGGLPKWLNMKVIEPLSNLYKDEVRIVAKLLGIPDVLLKRH
                     PFPGPGLAVRIIGEVTSEKIRIAKHAGEIVEYELKIAGFYEKVWQAYAAVGDDRAVGV
                     LGDERVYGHIVIIRVVESVDSMTADWTRLPYELIERISNRITNEVENVTWVTYAVSSK
                     PPATIEPQ"
BASE COUNT         1395 a          559 c          727 g         1133 t
ORIGIN      
        1 tcttttccag gattgccaga gactacctca aggtcactct tagttttaca ttttggacat
       61 ctaccatata ttgttttctt gggcaatggt gactattatg actggctatt aaaaaagctt
      121 aagacgaaca ttttggaaac taaataatta ccaataacta cttctcattt acaattcatt
      181 tctctgaatt ttgaatatta atattttgca atttttgata ctttatcttt tttgaaaaaa
      241 gcctgtttta tcaaaagtat gtttcaataa taaagcacag tctattaata actatcatgt
      301 aattttcagt atgaagttca tagactggtt tccttattat cagaatatca gacagcaatt
      361 tggatatagt acagagaaag atcaagaggc ggcatattac ctatcacggc ttataaagag
      421 aaaagcgctt gctccaaaag tattacataa aaaaattgca ggaaaacagg tattagtcat
      481 aggtgcaggt cctagcttag agaaaaatat catatttata aaaaagagcc gcaagtttgt
      541 caagatagtc tcagatggcg ctgtccaagc cttgattgaa aataatatca aaccggatat
      601 tgttgttaca gatttagacg gtaatcaatc gtttttacaa aaagcagaaa agatgggtgc
      661 attaatggta gtgcatgctc atggagacaa tattcagata ttacgaaagc ttgttccacg
      721 atttagacat attattggct ctactcaagt aatgccagtc gaaaatgtct ataattttgg
      781 cggatttacc gatggcgatc gctctgtatt tttggcagaa gaatttggcg ctaaagaaat
      841 tatccttata ggtatggact ttggtataca tataggcaaa tattcaaaaa aagtggtaga
      901 agatgttgaa ttgaaaaaaa agaaattgag agctggtaaa cacctacttg aaatgcttgc
      961 taaacaatca cgttcacgtt tatttgatac atctaaaaga ccaattcgag gatttactag
     1021 tttttatgat ataacaatta ataatgatta aaatgtttgg tcaaaggcaa gcaattggta
     1081 ttctaggcat gatttttgca atagtaggtg gtattgcatg gttcttccag cagacatttt
     1141 ttgcaataat gctatgggga gcagctggaa ttatattact aaaacttaat aagaaaaatc
     1201 aaagaagagc gaagagatag aggaggaagt ttattcatat attgattata attttattat
     1261 cataaatgat caatctgaaa tactattata ccatttatgt caaagatgcc ttgcaaatgt
     1321 ccaacttttc agaagacgat gtcagacgcg ctgccgagat acgcgaatgg ctagtcaaac
     1381 agatttctga cagacaggaa gaaattgaaa gattacgtac tacactatta cttattgata
     1441 atctgttaaa acatggcagt tttagacccg cttctaatat cacatcctca gttactctat
     1501 cgcactcagc atcagctgag gcgccagtca atgctgcaaa aatatcatct aatcccatca
     1561 agcaacagag gacggcaacc tctgctgatt ctatggcaga aacaattaca aatagctctg
     1621 aaccacaggc cacaaatgaa gttaaagagt ttagaccatt aaaacgagtt aaagataact
     1681 tattgcttgc aaatgcggaa ttattaccaa actcagttga aatcgtacca gctgaaggaa
     1741 taatactcaa tgttaatact cctcctttca gatctttctt tttgaataga attttagaag
     1801 gaatgaaaac aaaagatgca gaaaaagtaa gtcagaagca gattaaagat acagaatcac
     1861 taaattatca agtagaagaa gatactaatg gttctataaa aaaaatcata ataattaact
     1921 acagagaaaa agagcgtcta aatgagatat ttaacacctc tacatgggtc tttacacgga
     1981 tgatagaaaa gagtggaaaa taataggaat atggataaga taatagttct ggattttggc
     2041 tcccaatata gtcatctcat ctgtagacgt atacgtgaag taaacgtata ctgtgagcta
     2101 ttaccgtata atactcaagc caaagtactt aaagaactca atccaaaagg aataattttc
     2161 tcgggaggtc ctgcgagtat ttattcaaaa gattcgccaa aacctgataa agatattttc
     2221 gaaatgaata ttcccatatt aggaatttgc tacggtcagc aagtattaat aaataacttt
     2281 gaaggtactg taaaaaggtc aagcatcaga gagtacggtc gtgctgaact ggtaattgat
     2341 gacaagtctg atctttttaa gaatattgag aagaatataa aatgttggat gagtcatgga
     2401 gatgcagctg ataagcttcc aaaaggattc aaagttattg ctcatacaga taattcattt
     2461 tcagcttcta ttgcaaatca gcaaaagaaa ttctatggaa tacaatttca tcccgaggta
     2521 gtccacacgg aaaaaggaat tgatatttta aaaaactttt ctcaaaatat cagtatggca
     2581 aaagctgact ggaatatgga gaactttata gacatagcca taaaagatat tcgaaagcat
     2641 gttaaaaatg aaaaagtact atgtgcagta agtggaggaa ttgattctac tactgtggct
     2701 gctctgttac acagagccat aggtgacagt ttacattgtg tttttgttaa tcatggttta
     2761 ttaagaaaag acgaagaaaa tttggttagt aaactattca aagagcatct tggtattcaa
     2821 gtaatatata ttgatgcaga gaaacagttt ctgcaaaaat tgaaagggat taaagatccc
     2881 gaaaagaaaa gaaagatcat aggcgaagaa tttgcaaatg tatttgttga tgtagcaaat
     2941 aagtatggac cattcagatg gctagcacag ggaacgcttt atcctgatgt tattgaaagc
     3001 ggagtttcaa gaggtccagc agcagtaatc aagactcatc ataatgttgg tggtcttcca
     3061 aaatggctta atatgaaagt aatagaacca ttaagcaatt tatataaaga tgaagttagg
     3121 atagttgcaa aattacttgg tattccagat gtgttattaa agagacatcc atttcctggg
     3181 ccaggattgg cagttagaat aattggagaa gtgaccagcg aaaagatacg tatagcaaaa
     3241 cacgcaggtg agatagttga atatgaatta aagattgcag gattttatga aaaagtctgg
     3301 caggcatatg ccgcagtagg agatgacaga gcagtaggag tgctcggtga cgaacgtgtt
     3361 tatggtcata ttgtaataat cagagtagta gaatcagtag actctatgac agctgattgg
     3421 actagattgc cttatgaatt aattgaaaga attagcaaca gaattacaaa tgaggtagaa
     3481 aatgtgacat gggttacata tgctgtttca agcaagcctc cagcaacaat tgagcctcaa
     3541 taagaataag aataagaaaa cacttatact tacaaaccag acacttgaat ttttttattt
     3601 gatttatgaa ttgacaagat ataccaagat aagtgttaat aataataatt attttgattc
     3661 tagaatacac tgaaatagaa tgtgattgct tgacattata tgacaaattt tgctaagggt
     3721 tagtagtacc aaataaatgc ctgacctaat tttatacacg tggttataag cgtattatta
     3781 tgaacttgtc cgtgttactg aaatgaattg gtta
//
LOCUS       DATAAS010000026         4092 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4876637, whole genome shotgun sequence.
ACCESSION   DATAAS010000026 DATAAS010000000
VERSION     DATAAS010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4092)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4092)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4092
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4876637"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1457..2431)
                     /locus_tag="VHF08_00325"
     CDS             complement(1457..2431)
                     /locus_tag="VHF08_00325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX2067127.1"
                     /translation="MVDLIYGRGITDLIHEMPFYVNIFKNYISIKLFHSKPAMYGSVD
                     IINVCNLHCTHCYWWLNRKNENKDLTAEQWREVIKKTFKKQHIFVVTLVGGEPTMRPD
                     VIQVFCEEMPKRVCVVTNGTYPLKRFENLYFYWVSLDGTQKVHDSIRGEGSYAKTKQN
                     ILNYIIGQPSRKGKPSWKDIWLTMTINSLNYNTIEDLVEEWIGKVNKIGFQFHTPFIK
                     GDPLWMPFGEKRNEVVDKLIRLRKKYPNFIINGEKQLSLMKGNWGGIGTTPVQCPSWA
                     ILSLDHMGRVKQPCCIGSSDSKALKPICEECGLGCYSVLVAQGITGNS"
     gene            complement(2837..3130)
                     /locus_tag="VHF08_00330"
     CDS             complement(2837..3130)
                     /locus_tag="VHF08_00330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067128.1"
                     /translation="MALLKVYKRNSTFIDVSNLVEEISRLGLVDALQKYHNRALEKEA
                     KSIVAGPSFLQFLNKLFQIQISAGDIIQFESANNSKYYMLSATGTWDEIIRLQ"
     gene            3389..3511
                     /locus_tag="VHF08_00335"
     CDS             3389..3511
                     /locus_tag="VHF08_00335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067129.1"
                     /translation="MNALKGCDTRAPLRELYYSSAQMSAAKTISTDQVKKSKYR"
     gene            3862..4005
                     /locus_tag="VHF08_00340"
     CDS             3862..4005
                     /locus_tag="VHF08_00340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067130.1"
                     /translation="MTDIAKKIKNIGQDYEAKAKTSEEHAEGKPSSETLNKAKVKVRD
                     ALS"
BASE COUNT         1319 a          668 c          667 g         1438 t
ORIGIN      
        1 caatatctgt cccggatctt agagcagcca tagaagatag aactggtgca ccatgataaa
       61 acttgtttcc tcctacaaca agaacaatac cattatcacc ttttttggat gaggataggc
      121 gtggaacaac gagttctttt acaagttcac tatttactgt ggttacttct ggcaattcac
      181 ttcatagatc ttggtaagac gaataaactt tatcaatccg gggtaagata ttagcgatac
      241 atatagacaa taaatataga taacacactg ttgcgataga ttttcagata gataattttc
      301 aattgtaggc atacagaatt gttgcttact gcctaattgt tcataatatg attcacttgc
      361 tgtcaaaaag caacgtgatt ttattgtttt tcattttctc ttagatatta tatatatata
      421 tatatatata tatataatca tagatcatta gtggtttaat catactgttt ctatctgact
      481 ccatgaatag cttctaaatg aacagattta ctcagagatc cgctgtctta ggatacaaga
      541 ggtcagtcgg aaataagagt ggggaagatt tggataatta agtgtgaatt ttaagttaga
      601 tagcctatag cttcttcttt aattgtctat aatatcttga atgacataca aacacttatt
      661 ctgtttgtta acttttgttt gaaaaatgtc tgtgtctaat gggaagcatc aattttatgt
      721 gtgttagaag aaagagaaag agtctatgcc tttggcttgt ttcgtttgcg tctctcaact
      781 ttggcatact ttttacttcc tgatctctgt gcactgtaag catgtgtttt attccccttg
      841 cgatgagcca tcatttagat aagcaaaata agagaaatat atatgctatt ggattgtcac
      901 atagtttaat agtttaatta tttgttttag atcattgaat cctggaagga tattactaaa
      961 tttaatttta tattgggata gataaccatt aaatttcact aaagacaata cagaatctcg
     1021 agcaatcaga aaactgtctc cgaaacaagc atcatgactt atgtgaatga aatataataa
     1081 tagagattat aattattgtt gttgattaaa aacaacaaaa atttgcaaat gtcaatgtta
     1141 tgacaatata tactaattaa tccgaagaat gcaggctgta aaaagtcaaa gataattcat
     1201 ataattcgct atcaattatt tagatatatt ctctgtcatt tctgggattg tgatcacaga
     1261 tttaattcat gttttcttct tttatggtat actaagacca ttttctgtga cttggtctta
     1321 tctctctata ttcgacaaca taattacatc caataactgc acctttaaac aagaaaagta
     1381 taattaattt ccctgtgatt taattcggac acaactaaaa gtgtcacatc gaaccttctt
     1441 gagtatgcat ctagactcat gaattcccag taattccttg tgcaacaagc acagaatagc
     1501 aaccaagacc acattcttca caaataggct ttaatgcttt gctatcagaa cttcctatac
     1561 aacagggttg ctttactctt cccatatgat ctaatgagag tatagcccat gatggacact
     1621 gaacaggtgt agtgccaatt cctccccaat tacctttcat caatgataat tgtttttctc
     1681 cattaatgat aaagttagga tacttctttc ttaatctaat aagtttgtca acaacttcat
     1741 ttctcttctc tccaaatggc atccaaagcg gatctccttt aataaatggt gtatgaaatt
     1801 gaaagccaat tttattgact tttcctatcc attcttctac taaatcttca attgtattat
     1861 aatttaagga attaatagtc atggtgagcc agatatcttt ccaagatggc ttacctttgc
     1921 gacttggctg tcctataata tagttgagaa tattttgttt tgtttttgca tatgagcctt
     1981 ctcctctaat gctatcatgt accttctgtg ttccatctaa tgatacccag taaaagtata
     2041 gattttcaaa tcgctttaaa ggataagttc catttgtaac aacacacact ctcttgggca
     2101 tctcctcaca gaaaacctga attacgtcag gacgcattgt tggctcgccg cctaccaaag
     2161 ttacaacaaa gatatgttgt tttttaaaag tctttttgat tacttctctc cattgttctg
     2221 cagttaaatc tttattttca ttctttctat tcaaccacca gtaacagtga gtgcaatgta
     2281 aattacagac attgataatg tcgactgagc catacattgc tggtttggaa tggaaaagct
     2341 ttatgctaat ataatttttg aatatattaa cataaaatgg catctcatga ataagatcag
     2401 ttatgccgcg accgtaaatt agatctacca taaagtgata tttataaaac tgcagtagta
     2461 aataagtttt agattattat tttacttgtt acaatacttc catagtaaca catatatata
     2521 tatgaaggta tcttgggtgt ggggcctatg cctgcgttaa atagggcatc ccgtgtgtag
     2581 tcatattacc acaggttatg cagaatattg aatgtaatta catggaaaag gcaaaatgat
     2641 agcagctgaa aaagctacga atattaaaca ttattatctg ttaacaaggt ttcggctata
     2701 ggttggatgt gtttttttgt tgagtcattg tgctatgttg ttgttgtcaa tttgataatg
     2761 cgacatctga taatattcca ttattcccta gattgtcata tatcaaatac ttttttgatc
     2821 ctagtatgca atagggttat tgtaatctga ttatctcatc ccatgttcca gttgctgaga
     2881 gcatatagta tttgctgtta tttgcagatt caaactgtat gatgtctcca gctgatattt
     2941 gtatttgaaa taatttgttt aagaactgta ggaaactagg tcctgctact atgctcttag
     3001 cttccttttc aagcgctcta ttatggtatt tttgcagagc atcaactaat cctaatctgc
     3061 ttatttcttc tactaggtta gacacatcta taaatgtcga atttcttttg tagactttaa
     3121 gtagtgccat tataatatgt ctctatcctc ttgcttctta tatattgtga atagcaatat
     3181 gattattaaa tatacaagac gtctctgaat atgcatacct tgttaaaagc catgttcttt
     3241 gaattctaaa taaattgttc ttctttataa taatgatctc tataatatat tttggataag
     3301 accattaaca agagagattt ataagaatat atatacttgt aatataatct aatggtcaaa
     3361 ctttgtaata catgtggaaa ggatttcgat gaacgcgttg aaggggtgcg atactcgagc
     3421 tccactaagg gagttatatt attcttctgc tcagatgagt gctgcaaaaa ctatctcaac
     3481 agatcaagtg aagaagtcaa agtatagata gagaattcat agactacttt ttatatttag
     3541 cacaagtctg tcctttttat tctgaatatc attattatct ttcagttatt ctgatgatct
     3601 ctactatagt ggtcagttaa ggcaataggc aacaaaatga atgttaagtc taaattatgg
     3661 caaatgtttt tttatagaac catgcaagca tgcatatatt tctgatgagg gagcagtaac
     3721 agatatctta cacaacaaga gagagcttac tggtatatgt tggtatatat gagctctatt
     3781 agatagtatt atagtcttca acctcacttt ttcctctaat gtaaacttat taagatatgt
     3841 atgctataga taaagtagga catgacagat attgcaaaaa agataaaaaa tataggtcaa
     3901 gattacgaag caaaagcgaa gacatcagaa gagcatgcag aaggtaagcc tagctctgag
     3961 acacttaaca aggctaaggt aaaagtaaga gacgctctgt cttaacacct aaaaattata
     4021 gcctatcttt tctttttagt gtcatcaaaa ctggacaacg gacagcagag atatatccat
     4081 catggcaagt ca
//
LOCUS       DATAAS010000027         2578 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_17891, whole genome shotgun sequence.
ACCESSION   DATAAS010000027 DATAAS010000000
VERSION     DATAAS010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2578
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17891"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..888
                     /locus_tag="VHF08_00345"
     CDS             <1..888
                     /locus_tag="VHF08_00345"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEX2067131.1"
                     /translation="KENKDYNEDKNKNSIFTVNDWLYSKDVSLVKNSVSCFDIVWEEK
                     ENYDKMIEEKKHSDLLVDLITHDIGNYHQVIQTSLGLVIFLLEKNKASVLSLQDSEKI
                     FSYLTTAKNALMRSRSLVDNIRRLERLYGQKDLKLVLRNLPEAINNAYSTVEQTLYDN
                     NPYGKKISISMTHGHAMDINIMAEDLLDEIFINLFSNSVKYTDSSEVKIDVMIKDYFI
                     AEAKYWMITISDYGKGIPDSMKKELFERFYYKAKGSGLGLSIVRALVERYRGKIWVGD
                     RVYKDYTKGTTFGMIFPAA"
     gene            complement(961..1503)
                     /locus_tag="VHF08_00350"
     CDS             complement(961..1503)
                     /locus_tag="VHF08_00350"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HEX2067132.1"
                     /translation="MAQRLQTLEVGNHVIAVYHNKEEKFNEALAFLRDGLQRNELIML
                     LTTDLTKDEICAKMRTEWKVDVTKLESKGDIIIRTTEEWYFPDGVPNIQRTMALWSTL
                     VENSINKGKRGLRVFGDMVAFFKNGFSKELFDYELYLEQRFNFPAIGICAYDSRDIAN
                     MTLEQIRQLQQHHNPVWMQD"
BASE COUNT          920 a          360 c          448 g          850 t
ORIGIN      
        1 aaagaaaata aagattataa tgaggataaa aataaaaata gtatttttac tgttaatgat
       61 tggctgtatt caaaagatgt ctctttggtc aagaattcag tttcttgctt tgatattgta
      121 tgggaagaaa aagaaaatta tgataaaatg atagaagaaa aaaagcactc agacctttta
      181 gttgatttaa tcacacatga cataggaaat tatcatcaag tgatacaaac aagtttggga
      241 cttgtaattt ttcttcttga gaaaaacaaa gcaagtgttt tatcactaca agacagcgaa
      301 aaaatttttt cttatcttac tactgcaaaa aatgccctta tgagaagtcg gtcacttgta
      361 gacaacatac gtagactaga acgactttat ggacaaaaag atttaaaatt ggtactaagg
      421 aaccttccag aagcaattaa caatgcgtat tctacagtag agcaaacatt atacgataac
      481 aatccttatg gtaaaaaaat ttctataagt atgacacatg gccatgctat ggatataaat
      541 ataatggctg aggatttgct tgatgaaatc ttcataaact tattttctaa tagtgtaaaa
      601 tatactgatt catcagaagt aaaaattgat gtaatgataa aggattattt tattgctgaa
      661 gcaaagtatt ggatgataac catatccgat tatggcaaag gtataccaga ttcgatgaaa
      721 aaagagttgt ttgaacgttt ttattataaa gcaaaaggaa gcggattagg tttatctata
      781 gtgagagcat tagttgaaag atacagagga aagatttggg ttggagatag agtatacaaa
      841 gactacacta agggaactac atttggaatg atttttccag cggcttaaga atagtatata
      901 ctaataggat tattctcttt atgtcttcat atagtaatta tattattgtt attaatgcta
      961 ctaatcttgc atccagactg gattatggtg ttgctgcagt tgtcttatct gctctaatgt
     1021 catattagcg atatctctag aatcatatgc acatatgcca atagcaggaa agttaaatct
     1081 ttgttctaaa tataattcat aatcgaataa ttctttgcta aatccattct taaaaaatgc
     1141 taccatatct ccaaatactc ttaatcctct tttaccttta ttaattgagt tttctactag
     1201 cgtagaccat aatgccattg ttcgctgaat atttggtacg ccatctggga aataccattc
     1261 ttcagtagtt ctaatgataa tatctccttt tgattcaagt tttgtaacgt cgactttcca
     1321 ttcagttctc attttggcac agatttcatc ttttgtaaga tcggtagtta gtagcataat
     1381 aagctcattt ctttgcaggc catcccttag aaaggcaagg gcttcattaa atttttcttc
     1441 cttattatga tagactgcaa tcacgtgatt tcctacttca agtgtctgta gtctctgtgc
     1501 catctaacta attaaatagg tcgtacgata taatagttgt cttaaactat gcttctgatt
     1561 tgtttaaagt gctgctgatt gtttagactg attttgattt tatttagtgt aataccaagc
     1621 agattaatgt ttgggatgtt gtctaacaat tagtgtatga aaatatcaga atctattaga
     1681 tgagttgcat taggttttct ttctttgatt agttctatgt aagtgacttg gggacttgaa
     1741 agagaggatt cttcaaactc agtactaaaa aagagaaaat tatgaaaatg gtgtctttgg
     1801 tgaatgtact acacaaatat catagctgca atataacaat tgcttttttc aggacaacca
     1861 ccaacaccta atgccaaaga agaaggcgat aacaagaaaa tttccatgat cacataacaa
     1921 aaaatctcac aatataatta catgagatat ggaatagagt attgatctgt tgaggttacc
     1981 tgtgataata ggagccagta tggaatagag gcttatgagg atgaagctat ggatctctat
     2041 aaataactat acaaatgctt tgtgtatggt atacctctta aagaatcaaa gaatcaatgt
     2101 tgatagaata agaaagaatt gatggcaaga cttacacttt tgaatataat cgatgcgcac
     2161 taatattcaa caagcttaat agtgtaatgt aagaggatga ataagaacac gcattggaga
     2221 gacagaatga ccgaaacaac atccatctat cattataaag ataaagagcg ggataggttt
     2281 taaattaaag aatagtagat gaggatttaa cgtaagatta gcagaattga tatttctaaa
     2341 tagattatta gaacctctga atatgccacg gtgggatccg attaaggatt tgatgataag
     2401 aaagataacc ctcttaattg atgatcaaca aataaataat ctccaatata cggactgact
     2461 tctgttacaa aatatctgtc ttgattagaa atagatttag catattcagt tttaatatat
     2521 attctatcaa gccaaaataa tgctgtttct tgttcaaatg tcagatacta aatgatga
//
LOCUS       DATAAS010000028         1669 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4879418, whole genome shotgun sequence.
ACCESSION   DATAAS010000028 DATAAS010000000
VERSION     DATAAS010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4879418"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            378..1310
                     /locus_tag="VHF08_00355"
     CDS             378..1310
                     /locus_tag="VHF08_00355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyacid dehydrogenase"
                     /protein_id="HEX2067133.1"
                     /translation="MQVSGSVLICDSINQTGIDILKKAGMQVDYKPNILTDELISIVK
                     DYQVILVRSRTKITREIIQAASNAKIIARAGVGLDNIEVTAAEEKGIRVVNAPEAAIN
                     AVSELTVGNMISLARSIPLADSEMKRGKWIKKNLMGTELSGKYLGIVGVGNIGRNVGR
                     IAKALRMNIIGYDPYPIDRDYIKEVGLIVTDLNTLIQSADFITCHVPLLEETKHLFNA
                     ELISNMKSTAYIINASRGGVIDETALYNALCNGSIAGAALDVFETEPPLNNLLIELPD
                     VICTPHIGAQTKEAQELTSIVIAEKIIQIIRGVI"
BASE COUNT          601 a          257 c          291 g          520 t
ORIGIN      
        1 gacaatggtc aatattgact tcatttttta ttcttgcatt gcatttaaac atttggacaa
       61 ttcaaatcaa gccatagact tgcaaattaa tatgtggtta aaaataaatt cgtatctaat
      121 tttattctta tccaatttcc attctagaac tatcactaag agataacaga ttttttatca
      181 gagagctgtt gtatttacca aaatttgctc ttatctattt ttatcatatt tgtttctctt
      241 ttattatgat cagattaaaa ctccataaaa agtcctggct ttataatggc gaatagatca
      301 atagcccctt atttatttct aataaaccag aaagtttacg agtaataatt atattgctac
      361 gttaatgccc aagcactgtg caagtaagtg gtagtgttct tatttgtgat tcgatcaatc
      421 agactggaat tgatatttta aaaaaagcag gaatgcaagt tgattacaaa ccgaacatat
      481 taacagatga actaatatct attgttaaag attatcaagt cattttagtc agaagtagaa
      541 ccaaaattac ccgggaaatt attcaagcag caagtaacgc aaaaattata gcaagagcag
      601 gagtaggtct agataatata gaagtaacgg cagcagaaga gaaaggaatc cgagttgtca
      661 atgcgcctga ggcagcgatc aatgctgtgt cggagcttac tgtaggtaat atgatatctc
      721 ttgctagaag tattcctctt gcagacagtg aaatgaaaag aggaaaatgg ataaagaaga
      781 atttgatggg tacagagcta agtggtaaat acctcggtat tgttggtgta ggcaatatag
      841 gccgaaatgt aggacgtatt gcaaaagcat taagaatgaa cataattgga tatgacccct
      901 atccaataga tcgcgattac atcaaagaag ttggcttaat tgtaactgat ctcaatacat
      961 tgatccaaag tgctgacttt attacatgcc atgttcctct attagaagaa acaaagcatc
     1021 tatttaacgc tgaactaatc tcgaatatga aatcaacagc ttacataatt aatgcttcac
     1081 gtggaggtgt aatagacgaa actgcactct ataacgctct atgtaatgga agtattgccg
     1141 gtgcagcgtt agatgttttc gaaacagagc cgccattaaa taaccttctt atagaacttc
     1201 cagacgtaat ttgtactcca cacataggcg cccaaacgaa ggaggcgcaa gaacttacat
     1261 cgatcgtaat tgcagaaaaa attatacaaa taattcgtgg ggttatttaa tattcaagct
     1321 ttgccactaa acagttaaga aaaaatatta acaacagatt aattattttc ttttgatatc
     1381 agaatagtga aaatcatagc cataataaac cataacaatt tttcagatta cgacgtcaaa
     1441 ataaaaaagc caaaaggcat atcaagttac tatttataga aaagcgaatg tgataattat
     1501 tactattttt atctcaaatt gattctgttc tactgatagg ggcatcatac gaattatggt
     1561 attagaattt ctatatacaa atattaaggg tatttttata gtcattttat atgcgtagtt
     1621 atatggctga tacctggaca aatatgtgga agttaaatag tcaagaact
//
LOCUS       DATAAS010000029         2424 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1641259, whole genome shotgun sequence.
ACCESSION   DATAAS010000029 DATAAS010000000
VERSION     DATAAS010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2424)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2424)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2424
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1641259"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            266..571
                     /locus_tag="VHF08_00360"
     CDS             266..571
                     /locus_tag="VHF08_00360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067134.1"
                     /translation="MESFDILPPEKIAFIAYNIGVFESVQKFGHLITSGKIVNGMDVS
                     KVAELLSESHAFYDAEMISQLINSMLQYTQNSLIGNVTAAQVNYVMKQLKATGVPLP"
     gene            711..2120
                     /locus_tag="VHF08_00365"
     CDS             711..2120
                     /locus_tag="VHF08_00365"
                     /EC_number="4.1.99.3"
                     /inference="COORDINATES: protein motif:HMM:NF015406.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003904 - deoxyribodipyrimidine
                     photo-lyase activity [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HEX2067135.1"
                     /translation="MIKEYQKSLFIFRRDLRLEDNTALINALKSSECVIPCFILDPRQ
                     VENKNNQYKSNNALQFMIESLRDLDRQLSLLKHNDQSRLYLFYGEQENVVKQLISCEK
                     IDAVYVNKDYTPFSKKRDNCINQICYQSNVAFYQYADSLINEPEFVVDDNGKPFKIFS
                     YFLKKSIIFPINSPQIYAYNENNFYIKSIESEIQKEDIYKIVIEKPNEHIYAHGGRLK
                     CLKILMNLNRFKDYPSERDYPAKQQTTGLSAHIKFGTCSVREVYHSIKNQLGVDHLLI
                     KQLYWRDFFTYIAYHFPYVFGKAFHQKYDKIKWNDNKITFKMWCDGITGFPIVDAGMR
                     QLNKTGFMPNRLRMIVASFLTKDLHIDWRCGEKYFAQKLVDYDPCVNNGSWQWAASTG
                     CNVQHYLRTFNPWIQQKKIDPECEYVKKWVTELKDVPARLIHNLDKQRPLQLIDYPTP
                     ILDHYKEIIQSKNMFLSVR"
BASE COUNT          901 a          362 c          367 g          794 t
ORIGIN      
        1 tatttttatc atattcattt ttcttttatc tataaaatag tcaaatccat taactcttgg
       61 ttataaccac tttatatgag agtcatgtaa tttttgtttt tgatgctgct tgcgtactct
      121 acaagttgac gttattatag aagcacatat aatttcaaac tactcattat ctatatcttg
      181 actgttatga tagatataaa gaaaatcttc atatcaatat gtaagttaga aaaatatagt
      241 aacagtattg acattttgtt atatcatgga atcatttgat attttaccac ctgaaaaaat
      301 cgcatttatc gcatacaaca ttggagtttt tgaatctgtc caaaagtttg gacacttgat
      361 tacaagcgga aagatcgtca atgggatgga tgtatcaaaa gtagcagaac tgctttcaga
      421 atcacatgca ttttatgatg cagagatgat atcccaactt attaattcaa tgctacaata
      481 tacacaaaat tcacttatcg gaaatgttac agctgcacag gtaaattatg taatgaaaca
      541 gttaaaagct actggtgttc ctcttccata acggttacta ctactattat ctataattct
      601 tttcttcttg tgctactaat attactacac tacacagaca aacatgatag gtgttatctt
      661 tcaacctatc cattaaagta taatattttt taaattgaat cagaaattca atgataaagg
      721 aatatcaaaa atcattattt atttttagga gggatttgcg ccttgaagat aatactgcat
      781 taattaacgc tttaaaatca tcagaatgcg ttattccctg tttcatctta gatccgaggc
      841 aagtagaaaa caagaacaat caatacaaaa gtaataatgc attacagttt atgatagaat
      901 ccttaagaga tttagatagg caactgtcgc tattaaaaca taacgatcaa agtagattgt
      961 atctctttta tggagaacaa gaaaatgttg tcaaacagtt aatatcgtgc gagaagattg
     1021 atgccgtata tgtcaataag gattatacac catttagtaa aaaaagggat aattgtatta
     1081 accaaatttg ttatcaaagt aatgtagcat tttatcaata tgcagattct ctaatcaatg
     1141 aaccagaatt tgtcgtagat gataatggaa aacctttcaa gatattctct tattttctaa
     1201 aaaaatcaat catcttccct ataaattctc ctcaaattta tgcatacaat gaaaataact
     1261 tttacatcaa gtctatagaa tctgaaatac aaaaagaaga catctataaa atagtcatag
     1321 aaaaaccaaa tgagcacatt tatgctcatg gaggaagatt gaaatgtcta aaaattctta
     1381 tgaatttgaa cagatttaaa gactatccat cagaaagaga ctatcctgca aagcaacaaa
     1441 ctacaggatt atcagcacat ataaagtttg gaacttgctc tgtaagagaa gtatatcatt
     1501 ccataaaaaa tcagttagga gtagatcatc ttttaataaa gcagctatac tggcgagatt
     1561 tctttactta tatagcatat catttccctt atgtttttgg aaaggccttt catcaaaagt
     1621 atgataaaat aaaatggaat gataataaaa taacctttaa gatgtggtgc gatggcataa
     1681 ctggattccc aattgttgat gctggcatgc gtcaattgaa caaaactggt tttatgccta
     1741 atagattgag gatgattgtt gcatcttttt taacaaaaga tttgcatatt gattggcgct
     1801 gtggagaaaa atattttgct cagaaacttg tcgactacga tccttgcgtt aacaatggtt
     1861 catggcaatg ggccgcttct actggatgta atgttcaaca ttatctaaga acatttaatc
     1921 catggataca acagaaaaaa attgatccgg aatgtgaata tgtaaagaaa tgggtaactg
     1981 aattgaagga tgttccagct agattaattc ataatttgga caaacaaaga cccttacaac
     2041 ttatagatta tccaactcca atattagacc actataaaga aatcattcag tcaaaaaata
     2101 tgtttctaag cgtaagataa ataataattt tggaattaga tatagtcaag aattaataca
     2161 taaaagagtg gctataatat ctaaaaatct ggcatacttt aatagcaata ctacagttat
     2221 caaatagtct agtctatata tattatcaca tcaaattaac ttttcaaaca atgattagac
     2281 aaaaaaaggg acaacatggt gtattaatta tatctactta tccagatgaa gaatctgttg
     2341 tcagagtggc taaaatgatg ccatctttct ttacttgttg gaaattacaa tatgggcaaa
     2401 ctaagaacct attattgtat ctgg
//
LOCUS       DATAAS010000030         2984 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3261343, whole genome shotgun sequence.
ACCESSION   DATAAS010000030 DATAAS010000000
VERSION     DATAAS010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2984
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3261343"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..430)
                     /locus_tag="VHF08_00370"
     CDS             complement(<1..430)
                     /locus_tag="VHF08_00370"
                     /inference="COORDINATES: protein motif:HMM:NF014670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HEX2067136.1"
                     /translation="MSVSIYRITHGEFCNIITTVQRAIIPVGSLEQHGEHLPVSTDSL
                     IAENISKLVAEQIPSFVLPPILFGVSYEHRPMFNISVHNSTLSRIIADICCSLVENGM
                     KSILLINGDHGNSGALQYIAQNLYGKIPNDIRIHSINYWQL"
     gene            complement(798..962)
                     /locus_tag="VHF08_00375"
     CDS             complement(798..962)
                     /locus_tag="VHF08_00375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067137.1"
                     /translation="MSNDKSDLVCRCRGCNHEFAQQCSDARCECCTLEDHVKGSNAED
                     ATEVFPGGSI"
     gene            complement(1370..2251)
                     /locus_tag="VHF08_00380"
     CDS             complement(1370..2251)
                     /locus_tag="VHF08_00380"
                     /EC_number="3.5.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formyltetrahydrofolate deformylase"
                     /protein_id="HEX2067138.1"
                     /translation="MTDDYEKTLIEVTVIGKDRKGVVADITNFIFRKGGNIEKINQNV
                     VRGLFGMHLEASFQKVIMNELDDGLKELARMLHMEIKVHYQEPNRLRNVAILVTKEDH
                     CLLKILEAKQNGDIKANFLVIIGSNDSNLKSIVEDAGIPFHVVSNIDQIEAESRILQL
                     NEQYNIDLIVLARYMRILTPNFVWRYPNRIINIHPSLLPAFPGAYAYVQAFERGAKIV
                     GCTAHFVTEDLDQGPIICQESFKVMQSDTLETIKKKGQALEALTLLEALKLYLEKRLE
                     VYWGRVHIMEEEAKPTR"
     gene            2481..2672
                     /locus_tag="VHF08_00385"
     CDS             2481..2672
                     /locus_tag="VHF08_00385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067139.1"
                     /translation="MKQQRQKQQKTSKPRKNYDYNKPIGKCIVCYFLSGWHCYDCDND
                     FCGAHFHDHKERNLCIRVA"
     gene            2724..>2984
                     /locus_tag="VHF08_00390"
     CDS             2724..>2984
                     /locus_tag="VHF08_00390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067140.1"
                     /translation="MCKNYKISWLDLKNEISNLLKENEILLDETIFEPSRRGTNTAII
                     QPLAGSIKVRGDGSARTDYRSIELFNTSDIRRAFIAIDRVTVG"
BASE COUNT          938 a          524 c          497 g         1025 t
ORIGIN      
        1 tcaactgcca ataattgatc gaatgtatcc tgatgtcgtt aggtattttt ccatataaat
       61 tctgagcgat atactgtagc gctcctgaat ttccatggtc gccatttatt agtaagatac
      121 ttttcatacc attttcaaca agtgaacaac aaatatcagc tataattctc gataaagtgg
      181 agttgtgcac tgaaatgtta aacataggtc tgtgctcata agatactcca aataaaattg
      241 gcggtaggac aaaagaggga atctgttctg caactaattt tgagatattt tctgcaatta
      301 aagaatctgt agaaacaggc agatgctctc catgttgttc tagtgatcct acgggaatta
      361 tcgctcgctg aacagtggta attatattgc aaaattcacc atgggttatt ctgtatatag
      421 aaacagacat ctctaagttc aggcagtctt acaagtttat gaactttaca atatttcaat
      481 taatgatcgc tctttatata catagatgct acctatgacg gtattcacaa accgatgatg
      541 ctgatgatat ggatgtcaaa ttgctcgcta ttaataccga tgttgtaatt ttagtaatat
      601 gagtgtcatt ctactactga tggcattctg tatatattta ggttgtattc cacatattgt
      661 tgttatatgg ttttgatgtt aaacttttgt atttgtagtc ttatttattc tcctatgtaa
      721 attatttggt atgcctaaga aaaactagtg ctttaacatc gacataagaa tcagtattat
      781 atgtggataa ttaagttcta gatcgagccg cctgggaaaa cttctgttgc atcttctgcg
      841 ttactaccct taacatgatc ttcaagagtg caacattcac atcttgcatc tgaacattgt
      901 tgtgcaaatt cgtgattgca tcctctgcat ctacaaacca ggtctgattt atcgttggac
      961 attatcttta tttaaatgat aaatcattga gtataaatgt atcacaaata tttttttgtt
     1021 gattggataa tgcaatataa acagactcag acgatatttg tctgttcatg ttacgtattg
     1081 ccactcctat atatatatga cacattggtt ttctgagcta atactatctt ctcagtaagg
     1141 ggcaatagta agataaggat caaattaaac cagtcagtac aacatcagaa tataaaatga
     1201 tcaaaaagag caataacaat cataataata ggagagtcct tgtcattaaa gtattatcaa
     1261 gacacatcag aattcaaaga tttatcgtaa ttatattttg caagtaatac ctaatttaat
     1321 ttcattacat actcgaaact gaatagatcc attttgatac tttcttgttt tacctagttg
     1381 gttttgcttc ttcttccata atatgtactc ttccccagta cacttcaagt cttttttcaa
     1441 gatataattt caaagcctca aggagcgtca aggcttctaa tgcctgtcct ttctttttaa
     1501 tagtttcaag tgtatctgat tgcataactt tgaaagattc ctgacatatt attggaccct
     1561 gatctagatc ttcagtaaca aaatgtgcag tgcagccaac tatctttgct cctctttcaa
     1621 atgcctggac atacgcatat gctccaggga atgcaggtaa gagtgatgga tggatattga
     1681 taatcctatt aggatatctc catacaaagt taggagttaa gatgcgcata tatcttgcta
     1741 agactatgag atcaatgttg tattgttcat ttaattgtag aatcctgctt tctgcttcta
     1801 tttgatctat attactcact acatgaaatg gaattccagc atcttctaca atcgacttca
     1861 agttgctatc attgcttcca atgatcacaa gaaagttcgc cttgatatca ccgttctgct
     1921 ttgcttctaa aatttttaag aggcagtgat cctctttggt aaccagaata gccacgtttc
     1981 gaagtctatt tggctcttgg taatgcactt tgatttccat gtgtaacatc ctggctagtt
     2041 ccttcagacc atcgtcaagt tcattcataa tcactttttg aaaagatgct tcgaggtgca
     2101 ttccaaataa tccccgaacg acattctgat ttattttttc aatatttcct ccctttctga
     2161 aaataaaatt agttatatct gcaacaactc ctttacgatc ttttccaata actgtaactt
     2221 cgataagcgt cttttcataa tcgtcagtca tattgacgat ggataatggc cgccaccgaa
     2281 ataaatcttg tacccaacaa aaggttaatg cttatataat gatatttctt attaaatgaa
     2341 gttgattcac tttgtaaact ttaagaaaac ctctatctat ggggaagtaa ctattcctgg
     2401 agcctaaatg ctttgtttct gaataatatc actaagagta attttgttaa tagttgatta
     2461 taggagcagt ctataatatt atgaaacaac agcgacaaaa acaacaaaag acgtcaaaac
     2521 ctagaaagaa ttatgactat aacaagccaa taggaaaatg catagtttgc tattttcttt
     2581 caggatggca ttgctatgac tgtgacaatg atttttgcgg agctcatttc catgaccata
     2641 aagaacgaaa cctttgcata agggtggctt gatctaatat gtatatcgac gttgtctgct
     2701 ggtttgatga ttctggtaca gagttgtgta aaaattataa aatatcatgg ctggatttaa
     2761 aaaatgagat ttcaaattta ttaaaagaaa atgaaatatt actcgatgaa accatctttg
     2821 aaccttcaag aagaggaact aatactgcca ttatacaacc tttggccggc tccataaaag
     2881 tacgtggaga cggttctgca agaaccgatt atcgttcgat agaactattc aacacgtctg
     2941 atatcagacg cgcttttatc gctattgata gagtaactgt tggt
//
LOCUS       DATAAS010000031         2723 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_21489, whole genome shotgun sequence.
ACCESSION   DATAAS010000031 DATAAS010000000
VERSION     DATAAS010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2723
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_21489"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            676..2163
                     /locus_tag="VHF08_00395"
     CDS             676..2163
                     /locus_tag="VHF08_00395"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2067141.1"
                     /translation="MRLRYVTEITKDNLSYCKEMLKFASEIRHLDGVKGNFEVCDEKE
                     YVASNRLNKAEPLQQLIYSNVKEIVEQQQYIFDSFWNKAIPSEEKIREIEYGITPEVT
                     EVIQSPEETERREWDLLRKATKEVYIIYSTANAFDRQEYQGTIQVLGQLADKGVKIKL
                     LTPTDDHIKESLYDLKHKQQQNIEFRNIASTLGIKIKSLVIDRKYSMITELKDDSKEN
                     NSPKRSIGWSVYSNSQATVLSYLSIFETLWRQTEIYQELEQADRMKSEFINVAAHELR
                     TPIMPIIGYAEMLEEELKDDKKREGVTAILRNAKRLQRLAEAILDVTRIESNTLNIDK
                     ERLNLNDLILNALDDIVINTKEEELQRGYNNRTKISYRSTGEEIIIEGDRTRLTQVIS
                     NIISNALKFTKKGEGESIIVTTERNKDNNKEVIVRVKDTGSGIDPEILPRLFSKFASK
                     SSKGTGLGLYISKSVIEDHGGKIWAENNADGKGATFSFTLPIIIK"
BASE COUNT         1006 a          407 c          479 g          831 t
ORIGIN      
        1 ttttttagta gttatgtgcg tctcatactt ttctaagaca agatgagaaa atattgatcc
       61 gatagatcta ttttctttcc tgggatgtaa tatgagcagt agtacagttg tactcagtat
      121 agattcctta atcattttct atatgcacct ttagagatta taattagtta agctattttt
      181 gcatcatgat taattgggag caatacatta agaaaatgac actatactac atagaaaatt
      241 atcgctagtt tggttatttt ttacacaata aagatatttc atcatatatt tgttacatct
      301 atttatttag tatgctcaca tagaactgat tgggagaatt aagagagcaa gaatgagaga
      361 ttgtgcatca ttaaaacggt aggcagatga gttataatta ttagcataaa agacaacaat
      421 agagaaaatg aaaataacaa taataacaac gagataaaac aatatacgcc tatagaaaat
      481 aataaaatcc ttattgacaa aaatgaatat acaaagatat tttatggcac tcaaagctca
      541 actaaagcac ttgtagaatt tgtatctaga gcaaaacgga aaatagattc tgttatagat
      601 tctaaagcac catctgttat cattgaagtt gaatctataa gaaaagaaag atttgctgct
      661 gctaaagata gaggggtgag acttagatat gttactgaaa ttacaaaaga taatctctct
      721 tattgtaaag agatgttaaa atttgcttct gagattcgcc acttagatgg agttaaaggc
      781 aactttgaag tatgtgatga aaaagaatac gtggcttcta atagactcaa taaagcagaa
      841 ccattacaac aacttatcta tagcaatgtt aaggaaattg tagagcagca gcaatacata
      901 tttgatagct tttggaataa agcaatacca tctgaagaaa agataagaga aatagagtat
      961 ggtattacac cagaagtcac agaggttatt caaagtcctg aggagacaga aagaagagag
     1021 tgggatcttt taagaaaagc tacaaaagaa gtctacataa tatattctac agccaacgca
     1081 tttgaccgtc aagaatacca agggacaata caagttttag gtcaattagc agacaagggt
     1141 gtcaagatca aacttctaac tcctacagat gatcatatca aagaatcact atatgattta
     1201 aagcacaaac aacaacaaaa tattgaattt cgtaatattg catctacatt aggaattaaa
     1261 atcaaatcat tggtaattga tagaaagtat tctatgatta cagagttaaa agatgattca
     1321 aaagaaaata atagtcctaa aagatctatt ggatggtcag tatattcaaa cagtcaggca
     1381 actgttctct cttatctttc aatatttgaa actctctgga ggcagacgga gatatatcaa
     1441 gaactagaac aagctgaccg tatgaagagt gagtttatca acgtagcagc acatgagttg
     1501 agaacaccca ttatgcctat aataggatat gcagaaatgc tagaggaaga attaaaagat
     1561 gataaaaaaa gagaaggcgt tacggctatt cttcgtaatg ctaaaagact acagcgactt
     1621 gcagaggcaa tactggatgt tacaagaata gaaagtaaca ctttaaatat agacaaagaa
     1681 agacttaatc taaacgatct aattttaaat gcattagacg atatagtaat aaacactaaa
     1741 gaggaggaac tgcaacgtgg ttataataac agaaccaaaa tatcatacag atccactgga
     1801 gaagaaatca taatagaagg ggatagaact aggctgactc aagtgatctc taacataata
     1861 agcaatgctc ttaaattcac taaaaagggg gaaggtgaaa gtattatagt aactacagaa
     1921 aggaataaag ataataataa agaagtcatt gttcgcgtca aagataccgg ttcgggtata
     1981 gatccagaga tattgccaag attattttca aagtttgctt caaaatcatc taagggcact
     2041 ggtttaggtt tgtatatctc aaagagcgtt attgaagatc atggtggaaa gatatgggct
     2101 gaaaataatg ctgatggcaa gggagccaca tttagtttta cccttccaat tataatcaag
     2161 taacataaaa gactgattat ggctactgat aagccattga gaaaagaatg caataactat
     2221 tacatgaagc atagctcatt tcttttagct ccattttact cgttatctct ctacgttcgt
     2281 ctcttctcac ttcgatagtt catatgttcg ctattggtgt gtatatcttc cgtcggaata
     2341 atagttttgg aagtttattt ttgatactat tatccaagaa tttctgggtt gtcggtataa
     2401 ttttgacata tgacgcctct tcctgtctat tgatgcctga ttaattccta cctgttggat
     2461 attagtgtta acgtttgcta ttacaaatac tattacaatt gttattaggc ataaattctc
     2521 actttatgcc aatatttatt ttcaatgctt catacgtaat atgacgcagg ttttttaatc
     2581 gaaatcaaac aaatcaccaa gaaatcctct ctttcttcgt ctattatagt agtcatcgtc
     2641 gtcatcgtca tagtctcctc ttccataatg atatttctga taatgtgcat cttcgtacct
     2701 actttgcaca tttgctattt tgt
//
LOCUS       DATAAS010000032         2236 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2721438, whole genome shotgun sequence.
ACCESSION   DATAAS010000032 DATAAS010000000
VERSION     DATAAS010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2721438"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..631
                     /locus_tag="VHF08_00400"
     CDS             <1..631
                     /locus_tag="VHF08_00400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="precorrin-8X methylmutase"
                     /protein_id="HEX2067142.1"
                     /translation="MSERAIDIEKLSFEIIDAEIGSHGYNELEWPIVRRVIHATADFD
                     FARKGRIIFHNNPIDSAFNAIKNKCNIVTDVDMVLSALNKKSISDLGLKSACYISDKT
                     LSDKARLCNKTRSEMAMRYAADAINGGIVAIGNAPTALYEIIKMVRENVTKPALIVGI
                     PVGFVSASESKDELRKIDIPFISNIGRKGGSPAASSIVNAIMLLYKSKL"
     gene            822..1265
                     /locus_tag="VHF08_00405"
     CDS             822..1265
                     /locus_tag="VHF08_00405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEX2067143.1"
                     /translation="MKEIKTELEIMASSKRVWQVLTDFPNYSKWNPVIVQVKGEAKVT
                     TKLEIHLRTKGGKNRIYKPIITKVEPNHELRWFGKSIFPGMLNGERIFTIDSVGINNV
                     LFVHRQIFTGLGVYVAANRLDRDIRGTLNEMNVALKKQAEQLSVS"
     gene            complement(1320..1706)
                     /locus_tag="VHF08_00410"
     CDS             complement(1320..1706)
                     /locus_tag="VHF08_00410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067144.1"
                     /translation="MTSANNFALEQGKSAKAIDWMNSYAKMKNRKLEIRSENYSLSTL
                     KFGNFDAISWNGDWSAARLIIVKASSKLNMKVIEAGYHKKGSLISSLLGISDEIAKVY
                     SGGKLVGNIVLKSKSGKWIVKSEKTI"
     gene            1878..2222
                     /gene="trxA"
                     /locus_tag="VHF08_00415"
     CDS             1878..2222
                     /gene="trxA"
                     /locus_tag="VHF08_00415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEX2067145.1"
                     /translation="MESKSENVIHVTSKSWESVVINSDMPVLVDFWAEWCGPCRMVGP
                     AVEQLSQTMSNKIRVAKLNVDQNQEIAMKYGIRSIPSLLLFKAGKEIARTVGASSKES
                     YQKFIEQSLSKA"
BASE COUNT          775 a          368 c          411 g          682 t
ORIGIN      
        1 aatgtcagaa agagcaattg acattgaaaa attaagcttt gagataattg atgctgaaat
       61 cggttcacat ggctataacg aattagaatg gcctattgtc cgacgagtga ttcatgcgac
      121 tgcagatttt gacttcgcaa gaaaaggaag aataatattt cacaacaatc ctatagattc
      181 agcattcaat gctattaaaa acaagtgtaa tatcgttacc gatgtagata tggtactatc
      241 tgcattgaat aaaaaatcca tttccgacct agggttgaag agtgcttgtt atatctctga
      301 taagactctc agtgataaag ctcgtctatg taataaaact agatcagaaa tggccatgag
      361 gtatgctgca gatgcaatca acggaggaat agtagccatt ggtaatgctc cgactgcctt
      421 gtatgaaata ataaagatgg ttagagagaa tgtgacaaaa cctgcactta ttgttgggat
      481 tccagtcgga tttgtttctg cttctgaatc caaagacgaa ttaagaaaga tcgatattcc
      541 atttatttct aacataggaa gaaaaggagg aagtcctgcc gcctcctcga ttgtaaacgc
      601 aataatgttg ctatataaaa gtaagttata atctagatta ttcggatatt ggcaaagcaa
      661 tgaaaaggca atgttttttt agcgagtgtt attggtatat gcagactaac aaactaggag
      721 taagaaatta acaccagcaa caaaatataa caagcaaaat cgggatctac caaaatacgt
      781 ttaagtgcca ttggcaatta ataagaagaa actgaatcat attgaaagaa atcaagactg
      841 aacttgaaat catggcatct tctaaacgtg tatggcaggt ccttacagat ttcccaaact
      901 attctaaatg gaatccggtt attgttcaag taaaaggaga agcaaaggtc acaacaaagt
      961 tggagattca ccttcgaaca aaaggtggta aaaataggat ttacaagcct attataacaa
     1021 aggtcgaacc aaatcatgaa ttacgttggt ttggaaaatc gattttccca ggaatgttaa
     1081 atggcgaacg cattttcact atagattccg ttggaataaa taatgtactt tttgttcata
     1141 gacagatctt taccggatta ggagtttatg ttgcagccaa ccggctggat agggatataa
     1201 gaggcactct aaatgaaatg aacgtggctt taaaaaagca ggcagaacag ctttccgtta
     1261 gttgactacc tatcttcgaa taacttgtta attatacttt atataaaatt gttttatacc
     1321 taaattgttt tttctgattt gacaatccac ttgcctgact ttgatttcaa tactatattg
     1381 ccgacaagtt ttcctccgct atacaccttt gcaatttcgt cgctgatacc aagaagcgat
     1441 gaaataagac tgcctttttt atggtaacct gcctctataa ctttcatatt caacttgctg
     1501 cttgctttaa cgattattaa gcgagctgct gaccaatccc cattccacga tattgcatcg
     1561 aaattaccaa attttaaagt agaaagagaa taattctctg atctaatctc taattttcta
     1621 tttttcatct tagcatatga attcatccaa tctatagctt ttgccgattt tccttgctct
     1681 aatgcgaaat tatttgcact tgtcaatttg tatttattaa attataattt ctttttgaat
     1741 attaaaactt aatatttaga ggtaaataaa aatatgatag agaaaggcaa cataattctc
     1801 atctcgatat taaagcgcct attgccacat ttacgagacg gttcaaatag gacttcatat
     1861 atatatatat atcaagaatg gaaagcaaaa gcgaaaatgt aattcatgta acaagtaaat
     1921 cttgggagag tgttgttata aactcagata tgcctgtatt agtagacttt tgggccgaat
     1981 ggtgtggccc atgtaggatg gttgggcctg ctgtagaaca gctgtcacaa acaatgagta
     2041 acaagataag agtagcaaag ctaaatgtcg atcaaaatca agaaattgca atgaaatatg
     2101 gcattcgatc aataccttca ttattgttgt tcaaagcagg caaggaaatt gcaagaacag
     2161 taggtgcttc ttccaaagaa tcatatcaga agtttatcga gcaatctctt tcaaaggctt
     2221 aaattgcaat attgca
//
LOCUS       DATAAS010000033         2696 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3801206, whole genome shotgun sequence.
ACCESSION   DATAAS010000033 DATAAS010000000
VERSION     DATAAS010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2696)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2696)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2696
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3801206"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..883
                     /gene="artG"
                     /locus_tag="VHF08_00420"
     CDS             <1..883
                     /gene="artG"
                     /locus_tag="VHF08_00420"
                     /inference="COORDINATES: protein motif:HMM:TIGR04297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="thaumarchaeosortase"
                     /protein_id="HEX2067146.1"
                     /translation="DTFYLSWNVGRGALLFAMVFIAAEVIGSNHKINNKKFYLIVGLL
                     SLTLGYFIAIEELGLKESIRAAAPIYNVQIQESWTLMWDFIIIVLYVSICLSILYGKK
                     GFKIAPAGLVFIAGIVVILSLDAFFPKDTLGPLQYIVPIYLQIDERVIRLIDSSIVDL
                     GPDGPLVSARDNMLTLNGLQGRMNLIVFWPSAGVHSMIIYSLIMLIFFLKMRIPLKRK
                     LTYFVIGTMGTAVINIIRILSLSLFALIVSANPISWQSFHSIAGEIIFIPWLFIYVYS
                     VLFLENRLARKLQALKV"
     gene            complement(998..2206)
                     /locus_tag="VHF08_00425"
     CDS             complement(998..2206)
                     /locus_tag="VHF08_00425"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEX2067147.1"
                     /translation="MHHSDNTSTHRIIIHIDLDYFFAQCEEIKRPEIKDKPVVVCIYS
                     GRTKESGVVSTCNYIARNYGIKSGIPIKIAKAKLAQVSQAVFLPSDIKYYSEKSDTVM
                     TLIHDFLDNYSLSSARSNVFQPIKCAKFEYIGLDECFVEVTEKADFDFAKAKELANNL
                     KKQIRKETRLTCSIGIAPNKMIAKIASDFQKPDGMTIVEPDEAKNFISNCNVDKIPGI
                     GPKTSAKLLEMGIRTGGELSAFGLFRLIDAFGKKYATYLYNSAQGIDNQPVKSRGLAK
                     QIGRIITLKKDISQTSEIEGELEYICKSVYKTALDQNVLFRNIGILLILNDLDNISRS
                     KSLKTHSRDFNELYSSVKSILNVTLNNCPNIKVRRLGIKLSDLKDNEGQNTMLNFINN
                     NNNVIDTKTK"
     gene            2488..2637
                     /locus_tag="VHF08_00430"
     CDS             2488..2637
                     /locus_tag="VHF08_00430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067148.1"
                     /translation="MDNDTEISSYNFLTSIADVALIICMSNKFSIVIFINEKKKKKKN
                     AEINY"
BASE COUNT          832 a          435 c          437 g          992 t
ORIGIN      
        1 tgatacattt tacttatcat ggaatgtggg acgtggagcc cttttgtttg ctatggtttt
       61 tattgcagca gaagtaattg ggtcaaatca caaaatcaac aataagaaat tttatcttat
      121 agtaggttta ttgagtctta cattaggata ttttattgct attgaagaat taggactcaa
      181 agagtcaatc agagctgctg cgcctatcta taacgttcag atccaggaaa gctggacgct
      241 tatgtgggac ttcatcataa tcgtgcttta tgtaagtatt tgtctatcta tattatatgg
      301 aaagaaagga ttcaaaattg ctcccgcagg attggtattt atagcaggga ttgtagtaat
      361 cttgtcactt gacgcattct ttccaaaaga tacccttggt cctcttcaat atattgtacc
      421 tatatattta caaatagatg agagggtaat cagacttatc gacagctcca tcgtggatct
      481 tggaccggac ggtccactag tgtctgcacg agataatatg ttgactttga atggtttaca
      541 gggacggatg aatttgatag tattttggcc atcagccggg gtccatagta tgatcattta
      601 tagtctaatc atgctcatat tttttctaaa aatgagaatt cctttaaaga gaaaattgac
      661 ctatttcgta ataggtacta tggggactgc tgtgataaac ataatacgca tactctcatt
      721 atcattattt gcattaatag tatctgcaaa tcctatctca tggcaatcat ttcactctat
      781 tgccggagaa attatcttta taccttggct gttcatatat gtatatagtg ttctcttcct
      841 tgagaataga ttagcaagaa agttacaagc attaaaggtg taggacatat attatgtata
      901 cctcaagaga tcctttaaaa tatagtatga actgatgaac tttcaatttt ccaaataata
      961 aaaatatcaa ctaatttaag agaatgttga cattgattca ttttgttttt gtatcgataa
     1021 cattattatt attattaata aaattaagca tcgtattctg accttcgtta tccttcaaat
     1081 cagatagctt aattcctaat cttctgacct tgatatttgg acagttattt agtgtcacat
     1141 tcaatattga ttttacagat gaatacaatt cattaaagtc tcttgaatga gttttcaagc
     1201 tctttgaacg gctaatattg tctaggtcat tcaagattaa caaaatacct atatttctaa
     1261 ataagacatt ttgatctagt gccgttttgt atacagattt gcatatatac tctagttcac
     1321 cctcgatttc agaggtttga gaaatatctt tctttaatgt aattattcta ccgatctgtt
     1381 ttgctaatcc tcgtgatttg acaggttgat tatcaatacc ttgagcggag ttgtaaagat
     1441 aggttgcata tttttttcca aaagcatcaa ttaacctgaa taaaccaaag gccgacaatt
     1501 cgccgcctgt tcgtattccc atttcgagca atttagcact agttttagga ccgatgcctg
     1561 ggattttatc tacattacaa ttagaaataa aatttttcgc ttcatctggt tcgacaatag
     1621 tcattccgtc cggcttttga aaatcggagg cgatctttgc tatcatctta ttaggagcaa
     1681 tacctattga acatgtcaat cgagtttctt ttcttatctg ttttttaaga ttgtttgcta
     1741 attcttttgc tttcgcaaaa tcaaaatcag ctttctctgt gacttctacg aaacattcat
     1801 ctaatccgat atattcaaat ttcgcgcatt ttattggctg aaaaacattt gagcgagcac
     1861 ttgataaaga gtagttgtcc aaaaagtcat gtattaaggt cattacagta tctgattttt
     1921 cagaataata ctttatatcg gaaggtaaaa atactgcttg cgacacttga gcaagttttg
     1981 ctttcgctat cttgattgga atacctgatt tgattccata atttcttgct atatagttac
     2041 aagtactaac cactccgctt tctttagtcc taccagaata gatgcaaaca actacaggtt
     2101 tatcttttat ttctggtctt tttatttctt cacactgcgc aaagaaatag tccaagtcaa
     2161 tatggataat tatcctgtga gttgatgtat tgtcgctatg atgcatcttc tctattctta
     2221 ctgcacattt tcaagaatat aactaaattg ggtaactaaa ttctgtatga atttttgtaa
     2281 cagcggagat atcaatatga gatttaatgc atatgcttcc tgcattttct tatcattcat
     2341 aaatttttta ggctctgcag aatatatgta tttttaaaat cattactatg agatttaaat
     2401 aagatgtata attgtttact acttgctttg tcttgcttaa ctgtaggtaa ttgtcattgc
     2461 aatttagcaa gcagcgatcc ttaaattatg gacaatgata ctgaaatttc atcttataat
     2521 tttttaacgt caatagccga tgtggctctt ataatatgta tgagtaataa atttagcata
     2581 gtgattttta taaacgagaa gaagaaaaaa aagaaaaatg cagagataaa ttattagtaa
     2641 agacaaattc atattcacaa catatttcat ctttttattt tttaactgat ctcttt
//
LOCUS       DATAAS010000034         2074 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2722126, whole genome shotgun sequence.
ACCESSION   DATAAS010000034 DATAAS010000000
VERSION     DATAAS010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2074
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2722126"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(679..1830)
                     /locus_tag="VHF08_00435"
     CDS             complement(679..1830)
                     /locus_tag="VHF08_00435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX2067149.1"
                     /translation="MSSTFNTLNGYATPVGTKKYLEYAIQNGKPASHFRIFDNLYLSS
                     IGMGTYLGQVSSEDDKDIENAVYESIKSGAINVIDTAINYRAMKSEKSIGRALCRLIK
                     DDIISRDEVFISTKNGYITNDGDYPAVDVMEYMQKMYISTEIIKPNDISSGYNVLHPN
                     YIRRCIDKSLANMHLKCIDLVYVHNAFESWFEDVSREEFMHMLSKVFEVYEEYRSLNK
                     IKYYGMATWTCFRVHPDNREYLSLEEIVKLAKQVGGKQHGFRFIQLPYNLAYNEPIFL
                     KNQDVGSIKNLTILEAAERLNIGVFTSIPLFQSRLLNARIPEYAGLTDQVEKLIQIIR
                     STPAVISPLIGQKKPEHVQQNIKIANIPPLNNPEYKKAIQTIFNPNIQS"
BASE COUNT          692 a          327 c          319 g          736 t
ORIGIN      
        1 taagatgata aacttaaaat caatcaaaga tgtattacgt tcatctaacg gcagatgtaa
       61 cacatgtggt attcaattaa atgccacaga atttaccgtt aagacggaga agcattaaag
      121 attattatag gtcattccat ctagtgaaat aaaagaagat agctaatgca aatgctgtag
      181 agttatatga tatttaattt aagaactaat tgtgtactag tctaaactat atttagatta
      241 tcaacaatct acaaaaattg caagcgcggt tgtatgttgt ttaatgatcc aaatgcaata
      301 atcaattgtc tattgtttaa aaagattggg tttagtaaga acaaggcgtt ctagatttaa
      361 ctagtttagc tagaattcaa aatctgtatt attgtattta ttatattatt aaagcaactt
      421 gatgcgctct agatacctgt cttgaagcat tgcaaatatc aaactgctat tgttacatct
      481 taatattgaa tgcaaagtgt tgataaagtg ggaatgacaa agactataaa gagctctggt
      541 tgtccaaagc acatgagata acttgtcaat gagaagttca atcttagcaa acgatatatt
      601 cttgtatcca gctacagtgt ttcaaaagat agtgattgat agttacaaga atattcacat
      661 aacatagcac caataatttc atgattgtat atttggatta aatatggttt gaatagcttt
      721 tttatattct ggattattca acggaggaat gttagcgatt ttaatatttt gttgtacatg
      781 ttcaggtttt ttttggccta ttaatggaga gattactgct ggagtagagc gtattatttg
      841 aattagtttt tcaacttgat ctgttaatcc tgcatactcg ggtatccttg cattaagcaa
      901 tcgactttgg aacaaaggaa tacttgtaaa tacaccaatg tttaatcttt cagccgcttc
      961 taaaatagtc aaatttttta tagacccaac atcctgattt ttcagaaata taggttcgtt
     1021 atatgccaag ttatatggaa gttgtataaa acgaaatccg tgctgtttcc cacctacctg
     1081 ttttgctagt ttcacaattt cttctaagga taggtattct ctgttatctg gatgtaccct
     1141 aaaacaagtc catgttgcca ttccgtaata cttgatttta ttaagagaac ggtattcttc
     1201 ataaacttca aacacctttg atagcatgtg cataaattct tctctactaa catcctcaaa
     1261 ccagctttca aaggcattat gaacataaac aaggtcaata catttcaaat gcatattggc
     1321 caatgattta tcaatacatc gtctaatgta attgggatga aggacattgt aaccagagct
     1381 tatgtcatta ggctttataa tttctgttga tatatacatt ttctgcatgt attccatcac
     1441 atccactgcg ggataatccc catcgtttgt aatgtaacca ttcttagtag agataaaaac
     1501 ttcatccctt gatataatat cgtcttttat aagacgacac aatgccctac ctatactttt
     1561 ctctgacttc atagccctat aattgattgc agtatcaatt acattaattg ctcctgattt
     1621 aatagattca taaaccgcat tttcaatatc cttatcatct tctgaagata cttggccaag
     1681 ataagttccc attcctatac ttgataagta tagattatca aaaatacgaa aatgacttgc
     1741 tggttttcca ttttgaattg cgtactctaa atattttttt gttccaacag gcgttgcata
     1801 accattcaat gtgttaaatg tactcgacat atgattctct tatactagta ggaattaata
     1861 ttttaaggat taaacaaaag taattaccgt aacgtttgta tcatgtaaat ttagattaac
     1921 ggaaagtagt tatctgtctt gattttatct attttctact tgtattaaat attaagaaga
     1981 ttatttaaca aatacttctg tatactaaaa aaatatccat gcggtttact atagagaatg
     2041 atatagacgc ataataataa ccgctgatat tgct
//
LOCUS       DATAAS010000035         3995 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1107684, whole genome shotgun sequence.
ACCESSION   DATAAS010000035 DATAAS010000000
VERSION     DATAAS010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3995)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3995)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3995
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1107684"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(27..1400)
                     /locus_tag="VHF08_00440"
     CDS             complement(27..1400)
                     /locus_tag="VHF08_00440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067150.1"
                     /translation="MSGTKNIESAFKIKYEMKFLFFGFIIAIAVAIVFIHIILFIIDG
                     DRYLGTTSAVLLGTTSCLSLFTILSNRRNIEVQKFKLLFVGVTLWFLGEFSYSYYQIV
                     LDTDAPYPGVGEIFYIVGYGPLILFTYRSFKTINRDGLIKPRVIAFVVILASVVPVTS
                     TILIFSQEVDFQSQWPDIAISIITNYSDIFLLSLSILILTKLPRNNPYTYHWILFTSF
                     LILATITDFCYLYIAIVDEEFLLETELIWEGMWAFAYLCILASLFWYYKLTHILSENL
                     EYSMTDDYAEKYRNNISVKDKSELSEKKQLHTENIQDFKLVENRIDEIIKGSKGEIAI
                     IFSSIITLNRKEAQSILKFLKEKTKSNILVRILFPLGVDDGIINSYSEVANVRIFERK
                     LENNDIIIVSDYIKMLLVSTTDPIDYDKETAYAVTYSDIQEIIYTYATTFEKLWLLQT
                     VTKLELK"
     gene            complement(1978..2463)
                     /locus_tag="VHF08_00445"
     CDS             complement(1978..2463)
                     /locus_tag="VHF08_00445"
                     /inference="COORDINATES: protein motif:HMM:NF013052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SET domain-containing protein-lysine
                     N-methyltransferase"
                     /protein_id="HEX2067151.1"
                     /translation="MSYGAEKLPKKTLTWKKLYLDRTSGAGKGLFAQINFKKGNLIFT
                     WKGVKKKGSYPWYVGDRWLQIEKRQWIAPFRNNPGWFINHSCNPNSGIKDSVKIVAMK
                     NIRRGEEVTIDYSTSESENGWYLICHCENKNCRRTIRSYEFLPTKLKRKYRDFISEYL
                     K"
     gene            complement(2512..3006)
                     /locus_tag="VHF08_00450"
     CDS             complement(2512..3006)
                     /locus_tag="VHF08_00450"
                     /inference="COORDINATES: protein motif:HMM:NF025030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEX2067152.1"
                     /translation="MDIIFDEYEMRKLPPRERLNKIMQVLRNERDESIRWDSIWLAGE
                     ITEVINIDDPIFDEIADVMVWVLQNDDNGIVKHEAAFQIGVRNMRAKIPHLINSALND
                     KSELVRHESIEALGLMRAHECKETLKKMLEDPSEVVRETAVFVLKRLDRLTNRGDYKV
                     EAIL"
     gene            3054..3350
                     /locus_tag="VHF08_00455"
     CDS             3054..3350
                     /locus_tag="VHF08_00455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067153.1"
                     /translation="MTRFNVEASFHSFHLVDSDQGLLPMVLFVFAPHEPAALQIRPSR
                     EIYKVIVSLSSGLYAWPYREMPSLINPRPLLLTTKKKGEKFYPNSPNKFKCPKS"
     gene            complement(3787..>3995)
                     /locus_tag="VHF08_00460"
     CDS             complement(3787..>3995)
                     /locus_tag="VHF08_00460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067154.1"
                     /translation="GYGISMAAKLSTLARPNQVVISHGIYFGMHPAFRKKFVQMDLDP
                     QMWKYRHERFQPGVWRSLSLEDGE"
BASE COUNT         1203 a          820 c          637 g         1335 t
ORIGIN      
        1 gagcaggttc atctgacaaa tgatgtttat tttaactcca attttgtcac ggtctgaagt
       61 aaccataatt tttcgaacgt tgttgcgtat gtatagatta tctcttggat gtcagaatat
      121 gttacagcat acgctgtttc cttatcataa tcgataggat ctgtagttga aactagtagc
      181 atcttaatgt agtcagatac tatgatgata tcattattct ctagttttct ttcaaagatc
      241 cgtacattag cgacctcgct ataactatta ataattccat catcgacgcc caacggaaaa
      301 agaattctta ctaaaatatt tgattttgtt ttttccttca aaaattttaa gatgctttgt
      361 gcttcttttc tgttcaaggt aattatacta gagaatataa tagcgatctc gccttttgag
      421 ccttttatta tttcatcaat acgattttca actaatttga aatcttgtat attttctgta
      481 tgcaattgct tcttttcaga aagttcactt ttgtctttga ccgaaatatt gttccgatat
      541 ttttctgcat agtcatctgt cattgaatac tccaaatttt cgcttaatat atgagtaagt
      601 ttgtaatacc aaaataatga ggcaagaatg catagatagg caaacgccca cattccttcc
      661 catatcaatt cagtctccaa aagaaattct tcatcaacaa tcgctatata caaatagcaa
      721 aaatcagtga tagttgctaa tatcaggaaa gaggtaaata agatccagtg ataggtataa
      781 gggttgtttc taggtaactt tgttagaatg agaatcgaaa gagacaataa aaaaatatcg
      841 ctgtagttag ttatgatact aatcgcaata tcaggccact gggattgaaa atctacttcc
      901 tggctaaaaa ttaggatagt tgatgttaca ggtactacag atgcgagtat taccacaaac
      961 gcaataactc taggttttat taatccgtcc ctgtttatag tcttaaatga tctgtaagta
     1021 aatagaatta gaggcccata gcctacaata tagaaaattt ccccgacacc ggggtatggt
     1081 gcatccgtat ctaatacaat ttgataatac gaataggaaa attcaccaag aaaccagaga
     1141 gttactccta caaaaagcag cttaaatttc tgaacttcta tatttctacg attcgaaagt
     1201 attgtaaaca aagataaaca ggaagttgtt cctaacaaaa ccgctgaagt tgtgcctaga
     1261 tatctgtcgc catcaataat aaatagtatt atatgtataa acacgatagc tacagctata
     1321 gcaattataa atccaaagaa caaaaatttc atttcgtact ttattttaaa agcagattca
     1381 atattttttg ttccgctcaa ttacatatgc acccttttag aaattattta aattcatcct
     1441 cgataatata ttgtgacata cattctaact tgatatatct tgttccattc tactatttgt
     1501 cattttcatt tggtcccgtg ccattcttaa tgttaaaatt gatttgactc gagctttccg
     1561 taaaatttcc ttagcctatc gctcaactac aggttcgtaa ttatacgcca ccgagcatct
     1621 ccctcaccat agagacgttc acatcctttg cctttacctc aatagtattc gtaaaaaatt
     1681 cacatcttta tggtacctgt aatggcacta tagaaacaag aacaagaata ttccaaagat
     1741 tcagatttag gaaagactat atcaaatatt acacatagaa cgcgagcccg tctatgttat
     1801 gaggacgagt tcctatataa aatatctcac acttacacct tgttaattcc cttctatctc
     1861 ttctagctgg ttttaatatt cattataatt agatcctctg cattattttt cgtcttccat
     1921 agcagacgta gcagttagtt ttccattgtt atcgtctagg ctagcacata tactagatca
     1981 tttgagatat tcagaaataa aatctctgta cttccgtttt aattttgtgg gtagaaactc
     2041 ataggatctt attgtgcgtc tacagttctt gttttcacaa tgacatatga gataccaccc
     2101 gttttcactt tctgaagttg aataatcaat ggtcacctct tcgcctcttc taatattttt
     2161 catcgcaaca atttttaccg aatctttgat gccagagttt ggattgcaag aatggttgat
     2221 gaaccatccg ggattatttc tgaacggagc gatccattga cgtttttcta tttgtagcca
     2281 tctgtcgccg acataccaag gatagctgcc ctttttcttt actcctttcc aggtgaaaat
     2341 aagatttcct ttcttaaagt ttatctgtgc aaaaagtcct ttacccgcgc cactagttcg
     2401 atcaagatat agcttcttcc atgtcaaagt ttttttcggc aatttttcag caccatagct
     2461 cataggaata ccacatctta gacttaagaa caggactaat gaattaaatt attacagtat
     2521 cgcctctact ttatagtctc ctctatttgt cagcctatca agtcttttta gtacaaaaac
     2581 tgcagtttcc ctaaccactt cgcttggatc ctccagcatc tttttcagcg tttctttaca
     2641 ttcgtgggct cgcatcaacc ctaaagcttc tatagattca tgtcttacaa gttcgctttt
     2701 atcatttagt gcagaattaa ttaggtgggg aatctttgct cgcatatttc gcacgccaat
     2761 ttgaaaagca gcctcatgtt ttacaattcc attatcgtca ttctgcaaaa cccataccat
     2821 tacatcggct atttcatcaa agatagggtc atctatgtta atcacttccg ttatctcccc
     2881 tgcaagccaa atagaatccc atcgtatcga ttcatctctt tcgtttctta aaacctgcat
     2941 aattttatta agtctttctc gcggtggcag ttttctcatc tcatactcgt cgaagataat
     3001 atccattctt ggggcataat ttagaagaat tatttaaacc ttctcggttg tttttgactc
     3061 gatttaacgt tgaagcgtcc tttcattcgt ttcatcttgt tgactctgat caaggccttt
     3121 tgccaatggt tctatttgtg tttgctccgc atgaacctgc tgctttgcag atcaggccta
     3181 gtcgcgagat ctataaagta atcgtaagct tatcgtctgg actttacgcc tggccatata
     3241 gagaaatgcc ctcattaatc aacccacgac ctcttctgct aactactaaa aagaagggag
     3301 aaaagttcta tccaaatagc ccgaacaaat tcaagtgtcc gaagtcatag ggtaactcga
     3361 tcctgacgag cttactgcta accacagcgt atctgaatta cgaaggtttt tctcttcaac
     3421 atctctggac gtgtgaaact tccaataaca aatggcgaaa ttttgatctc tggattcaaa
     3481 tgaattttta tacaaatccc tacggcatta catcgcaaga aaccttttga gctttcgatt
     3541 acattcaaaa agactagcaa gaagaatccg cttttgaagc gatatgactt cacggctcgg
     3601 cgggcccgct aatcatacga gttgtaatat cagtgctgcc agatacaatg atgacggcaa
     3661 acggacaaag agaacgtgaa aataacgaca aatgaccgaa aagcttgaaa ctgtattaga
     3721 aatttcaaac ataccggatc atgtcaattc ttcaataagc acgtcagatc tgtggaactt
     3781 taggttttac tcaccatctt ccaaggacaa tgatctccaa acccctggct ggaacctttc
     3841 atgtctgtac ttccacattt gcggatccaa gtccatttgg acaaactttt tcctgaatgc
     3901 tggatgcatg ccaaaataaa ttccatggct aatcactact tgattgggtc gtgcaagtgt
     3961 agatagtttt gcagccatgc ttatgccgta tccca
//
LOCUS       DATAAS010000036         4188 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_23290, whole genome shotgun sequence.
ACCESSION   DATAAS010000036 DATAAS010000000
VERSION     DATAAS010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4188)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4188)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4188
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_23290"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(518..2809)
                     /locus_tag="VHF08_00465"
     CDS             complement(518..2809)
                     /locus_tag="VHF08_00465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067155.1"
                     /translation="MVNNTLQTSDTQESKASSNLPTLLAGPILRRVEQNQVCIWIACS
                     KAVDIRAEVFLLSDIEKKTNTSSINSENNDQTKSVSPIGLGSAQSIRLGEKLYIGLVI
                     VHPIQPDKESNRSSNDIKIRFPTDELLAYDIEVTYCINSNQQKKKERLKDFGLLSGKN
                     TIVYKSGLENHNDKEEDIGLPTFFIRGQGNTLPLNLLYGSCRKLHGKGEDCLAIADEI
                     ISNSVKDLNKRPSALFLTGDQIYADDVSDVLIKYLTQFSIRLLGWEEQISGVDKKLTD
                     IPIGERQQLVQELAKFTSENAGNHLLSFGEFAAMYLVAWNVENWPEKYKTELFKKTLS
                     QKEQKNIHMEIENLERAQKVLPAIRRVLANIPTYMICDDHEITDDWNITKEWTESVKS
                     SVCGRQIVANGLAAYWAFQAWGNNPDMYNEDFIHVITGYLGKNGNITDDEKRAFENYI
                     WNFHGWTFDVPTIPLTIFLDCRTQRQYDSFQDPPQLINEEGLQSILTTVEHTNYERGR
                     PIILVSPTPVFGFELAENLQEYLASKSSIYKWDLETWAANEKGFVQFLSFLIHNLRPR
                     HCIFLSGDVHYGFTISATFTLLSQRKKYGKKEGEEEKRDYHLSMNITQLTSSALKTTS
                     LGKEILLNEVLGHFRQLFASRHSVRIGWNDALLKSKKLKDQDSDPYTIIDGLDRNSHI
                     VKEKEEEQQVQHPTPSPDWIESRSIVKASGSGISSLIIADNNLGLVSVYGDRYKMLSH
                     KLLVHKEKETTTKISDTITELGS"
     gene            complement(3613..3909)
                     /locus_tag="VHF08_00470"
     CDS             complement(3613..3909)
                     /locus_tag="VHF08_00470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067156.1"
                     /translation="MRFLITTKVFETIQNAPDLKRQAELVDEQIKRIVDSGKLVEGGQ
                     FADSRGHFFLIDVENEKEMLQLLNRGLLDSCYIESHPIVSFKDLFDFFENNPVR"
BASE COUNT         1250 a          776 c          635 g         1527 t
ORIGIN      
        1 ctaacatctc atcagaaaca ggcatttaat tgaaagacaa ttctcttttt aattatattt
       61 acctttaact aaaaaaataa ttacctttta tcagaaaaga aagtgcgtag ttcttctatc
      121 gatcatcata ggatcaaaaa ttttgaaatc ttccatattt ttagctaatt agggtattca
      181 ttatataaac aaatattgaa tatggatccg acgattctat tttatcacta ttactattct
      241 ctcttctttt taattttatg aatcctgata gtggagtgat aacacaaccg gttcggtggc
      301 attaggtccc ggcatgtagg agggtcctgt tatttttatt gtcatttatc tttttctttt
      361 atatctgcat tgagcctgtt gcacgctttt atccaactgc ttttttctgt agtattcata
      421 tttgattcta aacagaggtt caagtactaa tttaacatac atagttcagt aactacgcta
      481 atgcatagtt ctttatcaac ttaatgaatc atcattatca tgatcctaat tcagtaatag
      541 tatcactaat ctttgtagta gtttcctttt ccttatgcac tagcagttta tgactaagca
      601 ttttgtatct atctccataa acactaacta gacccaggtt attatcagca attatgagag
      661 aagaaatacc tgaaccggag gctttaacaa tagacctaga ttcaatccag tccggagacg
      721 gggtaggatg ctgcacctgc tgctcttctt ctttttcttt aactatatga gaattgcggt
      781 caagtccatc tatgattgta tatggatcac tatcctgatc ttttagtttc ttggatttta
      841 ataatgcatc attccagcct attcttactg aatgtcttga tgcaaataat tgacgaaaat
      901 gtcccaaaac ttcattaaga agaatctctt tgcccaaact agtagtcttc agagcactgc
      961 tggtaagttg tgttatattc attgatagat gataatcacg cttttcttct tctccttctt
     1021 ttttcccata cttcttcctt tgtgacaaaa gtgtaaaagt tgcacttatt gtaaatccgt
     1081 aatgaacgtc tccggataaa aagatgcaat gacgtggtct taaattatga ataagaaatg
     1141 aaaggaactg cacaaaaccc ttttcatttg cagcccatgt ctctaaatcc catttgtaga
     1201 tgcttgattt acttgccaag tattcttgca agttttcggc caattcaaaa ccaaaaactg
     1261 gtgttggaga gactaagatg atgggccgac ccctttcata atttgtgtgt tctacagttg
     1321 tcaaaatcga ttgtaatccc tcctcattaa tcagttgagg aggatcctga aagctgtcat
     1381 attgtctctg tgttctacaa tctaaaaaga tagttagtgg aatagttgga acgtcaaatg
     1441 tccatccatg aaaattccaa atatagtttt cgaaagctct tttttcatca tcagttatat
     1501 tgccattttt tcccaaatat cctgtaataa catggataaa atcctcattg tacatatcag
     1561 gattatttcc ccaagcttgg aacgcccaat atgcagctaa accattagct acaatctgcc
     1621 tcccacatac actagatttt actgactcgg tccattcttt ggtaatattc caatcatcag
     1681 taatttcatg atcgtcacaa atcatataag taggaatatt agcaaggact cgacgtattg
     1741 caggtaatac tttttgagct cgttccaaat tttcaatttc catatgaata ttcttctgct
     1801 ctttttgtga taatgttttt ttgaacaatt ctgttttata cttctcaggc cagttttcaa
     1861 cattccaagc aacaagatac atagctgcaa attcaccaaa acttagcaga tgatttcctg
     1921 cattttcaga tgtaaattta gcaagttctt gaactagctg ttgcctctct ccaataggaa
     1981 tgtctgttaa ttttttgtct acaccgctaa tctgttcttc ccatcctagc aatctgatac
     2041 tgaattgagt cagatattta atcagtacat cagatacatc gtcagcatat atttgatctc
     2101 ccgtaagaaa aagagcactt ggccttttgt ttaggtcttt gactgagtta gatattattt
     2161 catctgctat tgctagacaa tcttctcctt ttccatgtag tttacggcaa gatccataca
     2221 agagatttaa tggaagagta tttccttgcc cacgtataaa gaaagttggt aatccgatat
     2281 cttcttcctt atcattatga ttttctaagc cagatttata gacaattgta ttctttccac
     2341 ttaatagacc aaaatcttta agtcgctctt tcttcttttg ttggttagag ttaatacaat
     2401 aggtgacttc tatatcatat gctagcagct catctgttgg aaacctaatt tttatatcat
     2461 tcgatgatct gttgctttct ttatctggtt gaattggatg tacgattaca agcccaatat
     2521 agagcttctc tcctagtcga attgattgag cacttcccaa tccaatagga cttacacttt
     2581 tagtttgatc attattctca ctattgatag agctggtgtt ggtctttttc tctatatctg
     2641 ataacagaaa gacctcagct cttatatcta cagctttgct gcaagctatc catatgcaaa
     2701 cctgattctg ctctactcgt cttaagattg ggccagcaag taatgtaggt aagttggatg
     2761 acgccttact ttcttgtgtg tcactggttt gtagagtatt attaaccatt tatattcctc
     2821 gataacgatt taactgtctg tatttcaagt tgaactttta agcatttgta tagtctatgt
     2881 cttatcatag tcaacaactt cacctcttaa tattgagtgt tttatctcct aatactgatt
     2941 atagattaca gtaaatccaa ttgtttttac cccctagtga taagaatctc tattctataa
     3001 aataaaaaat aaacgggttc tgttgaatct agtcattgtt ccgtgtgatt agattcacgc
     3061 atatgaaggc ttcgataatt ttgttatttt agctttttct attattgatg ttgtacagat
     3121 tatctagtat ctaagacaga attgacaacc atccggtggg acgcaataca ctagtgtgta
     3181 taatctacta gagcggtctt aattatgtaa agaatgaagg ttccatttta tatctagttc
     3241 ctcaagtatg tctttgactc ctattactcc aatatccgca tttcaggaat gtcatatcac
     3301 aactgagaag ggtagaatcc taaagtaatt taagtatccg gaaattgact aaggaacatg
     3361 taaatccata tttcgttagt agtcacaggt ctgtatactt ttacattcat tatgtattac
     3421 taaggattgt gcacaaattc ttataccctt aatggctcat aggaaatgaa taataacagt
     3481 catttctgtc tctccctctc acctaagtat tcttgccggt ctaaaataat gagaaagctg
     3541 ctggtgatac aatgactgtg atagacttct atggatttaa atctgaactc ctctaccttt
     3601 tacttatcat attcaacgaa ctggattatt ttcaaagaag tcgaaaagat ctttgaatga
     3661 tactatagga tgactttcta tataacaact atcaagcaat cctctattaa gcagttgtaa
     3721 catctccttt tcattttcta catcaattaa aaagaagtga cctctgctat ctgcaaattg
     3781 tcctccttct actaatttac cagagtccac tattcttttt atttgttcat ctacaagttc
     3841 ggcctgtctt tttagatctg gagcattttg gatagtttca aatacttttg tagtaattaa
     3901 aaatctcatt ttttatctta caattatggt aaatcaggat tatttatact ctatagaata
     3961 tattttagtt attagtcatt atttttccag atataccgta gaaagaatag acaatagctc
     4021 aagtcaaagg ttcgatagta agaattgatg atcacaacta tatggtataa agtaacaatt
     4081 acaatcatta tcaaatacaa atacggctgg taccagatgt ggcttacatt ctaaatcaac
     4141 tgttgctagt ctacctactc tagatttatt gattatattt ttaaaaaa
//
LOCUS       DATAAS010000037         1577 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3804082, whole genome shotgun sequence.
ACCESSION   DATAAS010000037 DATAAS010000000
VERSION     DATAAS010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1577)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1577)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1577
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3804082"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            356..1108
                     /locus_tag="VHF08_00475"
     CDS             356..1108
                     /locus_tag="VHF08_00475"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2067157.1"
                     /translation="MLENKVAIVTGASSGIGYFTSLALSKAGARVAVGARRTDRLQEL
                     EAQIIKNKNNKKEDIFVRKLDVTNKSDCDSFVDAVVKKWGKVDILINNAGLMPLSFFT
                     NGKVEEWEQMIDVNIKGVLYCTSAVIPYMLDEKSGHIVNISSVAGRIVFAGGSVYCAT
                     KHAITAFSEGLRMELSPKYNIRVTCIEPGAVSTELLGSITDESMKGFIEATKNMETLQ
                     SEDVANAILYAVQTPIHVNVNEILIRPTAQAR"
BASE COUNT          570 a          227 c          290 g          490 t
ORIGIN      
        1 tacaagtcat atttttaata gaatcatcta atctctaata tgttacaaag aaattagttt
       61 agttagattg atttctggtt tctgagatat gagatcgtac tgcagattaa ggttgtaaat
      121 ctctcaagca tagcatgata gtaagaaata aaaatgttag atatattata tctgctaaga
      181 attatccaga atatatcata caaaaaacag catgaatatc cgaatttttg cttttacctt
      241 attactctcc acattacgat ggtaagtagt aactttgtgt tatatctggt ctattatatc
      301 gaatttgtga taaatatcaa taagtacatt ctttaatcat attggtattc ttaaaatgtt
      361 ggaaaataaa gttgcaatag ttacgggagc aagtagtgga atagggtatt tcacatcttt
      421 agcattatca aaagcaggtg caagagtggc agttggagca aggcgcacag acagattgca
      481 agaattagaa gcgcaaatta tcaagaacaa aaacaataaa aaggaagaca tttttgttcg
      541 aaaacttgat gttacaaata aatcagattg tgattcattt gttgatgccg tagttaaaaa
      601 atggggaaaa gttgatattc taattaacaa tgctggttta atgccgctaa gttttttcac
      661 gaatggcaag gtggaagaat gggaacagat gatcgatgta aatatcaaag gagtattata
      721 ctgtacttca gcagtaattc catatatgtt agatgaaaaa tcaggacata tagtcaatat
      781 ctcgtcggtt gcagggagaa tagtatttgc tggaggaagt gtttactgtg caacaaaaca
      841 tgccatcact gcatttagcg aaggattaag aatggaatta agtccaaagt ataacatacg
      901 agttacatgt attgaaccag gagctgtttc aacagaacta ttagggtcaa taacagatga
      961 atctatgaaa ggatttatag aagctacaaa gaatatggaa acattacagt cagaggacgt
     1021 tgcaaatgca atcttatatg cagtacaaac accaattcat gtcaatgtca atgagatatt
     1081 aataaggcca acagcccaag caaggtaatg aactctatac tatctggcta gtttgtccaa
     1141 aaagaatatt atctttgtca ggttcaaaat gtgtaagtcg tacgtgtaat taaggatagg
     1201 agatcgattg aaaatcaatc attcaatccc ctaaagatag ctcaattaga aacatctttg
     1261 atttcactac aaccagtaat ggacatcagg ctgtaaaact cgctccttca atggtattgg
     1321 tatgatgagt caagcatata tactaaggta aagaatgatc caggataatc attattataa
     1381 tgagtaggga attcttctat catagagaga aaggtttact ttaattgtca caactacaat
     1441 cactcttttg atcaaagata attctttgtc tttactcaaa tagttggcta aacgaggttt
     1501 ttcatcttca gttctactga tactacttct tgcagtttag atgtacaaag ctatagtcat
     1561 cgttacaatc attatca
//
LOCUS       DATAAS010000038         3464 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4345594, whole genome shotgun sequence.
ACCESSION   DATAAS010000038 DATAAS010000000
VERSION     DATAAS010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3464)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3464)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3464
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4345594"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..681
                     /locus_tag="VHF08_00480"
     CDS             <1..681
                     /locus_tag="VHF08_00480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067158.1"
                     /translation="LAKAAADPNIDWIVIVHHDQQYASTANNLLSRANKWKEAYHPLF
                     DQYDVDLILQGHQHNYQRTYPIKYNSDNPVNPIITDRNTNTYTNPEGQIYLTVGTGGV
                     YLQNLKGNKAPYLVTTQDKEFGFLNVDVTNNNNDGTTTLVGTFYSNAGGEMTDQFTIA
                     KSAEGDLFLPPSSPPELPTQEETDILDEVDDGDAGFGDDDSVVSEDGEDVDATDDGGD
                     GGDDGGDD"
     gene            complement(1727..2032)
                     /locus_tag="VHF08_00485"
     CDS             complement(1727..2032)
                     /locus_tag="VHF08_00485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067159.1"
                     /translation="MKKIYLIIIKNRYLKIGLLLLVASGVMAIYLSNEGFNCLSKLNR
                     KEKDSFTADGSLEGLASYCFFITNSYVYSLFGVAIGAIIIVAWYCKYRNIWYTKYKK"
     gene            2493..2885
                     /locus_tag="VHF08_00490"
     CDS             2493..2885
                     /locus_tag="VHF08_00490"
                     /inference="COORDINATES: protein motif:HMM:NF042555.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6659 family protein"
                     /protein_id="HEX2067160.1"
                     /translation="MIDDKFLYTFSKDVLGLDPSIRWVGIADNTGVLLNAEHREGVKL
                     LLSDEENEEYASNAIKRHKTRTTFESKLGKMNYALGKYEGLIRATIPINNNYYLLITL
                     EVEAKDYDTIIIEKVIPFIEKEKEKFFS"
     gene            3239..>3464
                     /locus_tag="VHF08_00495"
     CDS             3239..>3464
                     /locus_tag="VHF08_00495"
                     /EC_number="1.-.-.-"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEX2067161.1"
                     /translation="MKVIQAIPSMPKPVTETEVTNFLQQSKLNVQIATIDEEGYPVIQ
                     PVWFIYDKESDKIYTGTSKMTKKVQNIRRNP"
BASE COUNT         1293 a          537 c          568 g         1066 t
ORIGIN      
        1 ctagcaaaag cagcagcaga tccaaatata gactggattg ttatagtcca ccatgaccaa
       61 caatatgctt ctactgcaaa taatctatta tcaagagcaa ataaatggaa agaggcatac
      121 cacccactat ttgaccaata tgatgttgac ttgatacttc aaggacatca gcacaactat
      181 cagcgtacct atcctattaa atataatagc gataatccag ttaatccaat aataacagac
      241 agaaacacaa atacttatac aaacccagaa gggcagatat atcttacagt aggaactgga
      301 ggtgtttatc ttcagaatct taaaggaaat aaagctcctt atctggtaac tacccaagat
      361 aaagaatttg gttttctaaa tgtagatgtt acaaacaata acaatgatgg aacgacaacg
      421 cttgttggta cattctacag caatgctggt ggagaaatga cagaccaatt caccattgca
      481 aaatcagcag agggcgatct attcttacca ccatcatcac caccagaatt accaactcaa
      541 gaagaaactg atatacttga tgaggtagat gatggcgatg ctgggtttgg tgatgacgat
      601 tctgtagtat cagaagatgg tgaagatgta gatgctacag atgatggcgg cgatggagga
      661 gatgatggcg gcgatgattg ataagattac aatgatgatg gcggctttat aacaagatcc
      721 ataccatcat gtctattggt ttactcatgg cattagtagg atttgtaata gctgtcataa
      781 gaagatatgg ttgataataa tgaaattaag aaaagaaaac acaataagca ccacatgaac
      841 tactactccc atgccttttt accttcatta cttctctacc tcccctttct atagagtcat
      901 gtaatggata taagaaagcc tagattgaga tcgttactac atatagatca caataataga
      961 tttttcttat ctataagaat ttgtcttgta aattgtacaa gattttttct aaattgataa
     1021 agtcaaaagt ttttaaacct atattgaatt aatattaaat gaaattatat gatgatgtta
     1081 tgctgctgtg aagtgaatcc aaatatgaca tttcaaacaa gatcagccaa tttcaaaaga
     1141 tcgcagataa aagaattgta tgaattagct gctgatgata taatggaaaa atactaagtt
     1201 gagattatat tgtaaagata tctgtcatca atataaagcc cataaatctt cttatgaagg
     1261 aagttattac atcaaaggct ataaaagatg tatagaatgc gagacatttc tacaatggga
     1321 tggacttaga tgcccttgtt gcggacgcat tctaagaaca aaaccgcata acaccatttc
     1381 aaagggaaaa ttacgtctaa agcagagggc ttatttggaa cgttatttaa ttaagtgatt
     1441 tgtgaattga ggtatgtaag aaggcaaaac attccttact tatctgttga ttaataataa
     1501 tgacttaatt ttacggttaa agtattactt acaatgatag atactataat acattgtata
     1561 tagattatat atattataaa tcaaaatttg tgtatctttc atttttctgt taatcacttt
     1621 ttataaattc gataagcaaa aaataggagg tagcaagaat agtaacacga tgcaattgaa
     1681 aaataaaatt tctatatata gaagaaaaaa agcaggctag tagaaattat tttttatatt
     1741 tggtatacca tatatttcta tatttacagt accaggcaac gattattatt gctccgattg
     1801 ctactccaaa taatgagtat acataagagt tggttataaa gaaacaatag ctcgctagtc
     1861 cttctaaaga tccatctgca gtaaaagaat ctttttcttt tctatttaat tttgataaac
     1921 aattaaaccc ttcattactt agatatatag ccataactcc acttgcaact aaaagcagta
     1981 agccgatctt taggtatcta ttttttataa ttatgaggta tatctttttc atagttgttt
     2041 ttcatctaat attaaggcat tcttgtatca ttggaaattt gcttatctga aatagcttta
     2101 agtgtcctct tatgctccat aacattgcaa actaccataa tttatccaac aacacattct
     2161 tccaatgaac aatttagaca ttctgatgac gatctgctat ttttacagtc ttctgaaaag
     2221 caatcacaat tagtacatct aattctcata acctttctaa ctacatcatg ataaaaaatg
     2281 tttcagctaa aaatgcctaa agcaatcaag ttagagaagc tcagaggagt agattagaga
     2341 agatataaac tagcataatc aataataacg tggctttttt tagtagttcc tacaacatag
     2401 agcgagaaga gaaagagaca ccttgctaaa tattaatatt attactctat aataataaca
     2461 ttttaaatag aattggtagt tgagaaataa taatgataga tgacaagttt ctttatacat
     2521 tcagtaaaga tgtattggga cttgatccct ctataaggtg ggtgggtatt gcagataata
     2581 caggtgttct ccttaatgct gaacacagag aaggagttaa acttcttctg tcagatgagg
     2641 aaaatgaaga atatgcatca aatgcaataa agagacataa aacaaggaca acatttgaat
     2701 caaaattggg caaaatgaac tatgcacttg gtaaatatga aggactgatt agggcaacaa
     2761 tcccaataaa caataattat tatttgctta taacattaga agtagaagca aaagattatg
     2821 acacgataat aatagaaaaa gtgattccat ttatcgaaaa agagaaggaa aagttttttt
     2881 catgattttg atgacaatga tgataataat aaaactatct agctatcatc atcaacaata
     2941 ataaccatta gagtcttatt actctaagtt aaataaaatt aagtatcata ttagggtaaa
     3001 caagggtttt gccactaata aaagcgtgga aataggtatt tactttttaa aaaagtaagg
     3061 tttatgctaa tgtcgggata ttcaaatctc ctgctgttgt tgtagtcgca caactatatg
     3121 tgttgtagct aaataataat aactagacac ttacttttta cctatgcatt ggtaaactca
     3181 ttccatccaa tcccaatccc aatatttata tcaaaaattg acgtttgatt gatgtacatt
     3241 gaaggtcatc caagctattc caagtatgcc aaaacctgtt actgagacag aagttaccaa
     3301 ctttctacaa caaagcaaac tcaacgtaca gatcgccaca attgacgaag aaggatatcc
     3361 tgtgattcag cctgtttggt tcatttatga caaagaatct gataagatat acacaggcac
     3421 ctcaaaaatg acaaagaagg ttcagaatat taggagaaat cctg
//
LOCUS       DATAAS010000039         4075 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1645968, whole genome shotgun sequence.
ACCESSION   DATAAS010000039 DATAAS010000000
VERSION     DATAAS010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4075)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4075)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4075
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1645968"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            363..1358
                     /locus_tag="VHF08_00500"
     CDS             363..1358
                     /locus_tag="VHF08_00500"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEX2067162.1"
                     /translation="MILKSISFGTGLITVAIVLITILMSVGADFSAPDIAYSQSVPSV
                     PSVPTSDSINTANNNNKAVILTFDDGYKSQYTNAKPILDKYGYKATFYIVCEYVGGGE
                     GQVHPNVKMTWEDIIALHNEGHDIGSHTMSHDDLDGLSEEGLEYEIGGSKECLFDHGI
                     IPTSFSYPTNTGAQNAAVVNTVAKYYDIARTANDPLMYLHCDGFKEESSQTDCRTFSD
                     DGELTFVNRYSIMGWSHDAERKDNSYSDSEMLDRFIEVVNSQSAYNTDGKINALPIII
                     WHRIDNSGVGDPEQYATTIDLFEKEIKYLHDNGFKVLTMADLGYDESSNYLYLKR"
     gene            complement(1411..1701)
                     /locus_tag="VHF08_00505"
     CDS             complement(1411..1701)
                     /locus_tag="VHF08_00505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEX2067163.1"
                     /translation="MKQHHLIEIFSANCPLCKHITEDIQIGKCEGCNQIVYDINNMTE
                     EIKVKMKEYDVKAVPTTVVDGKIKVVGIPDFPWICGEDLYKQLKNMYPLKRD"
     gene            complement(1882..2058)
                     /locus_tag="VHF08_00510"
     CDS             complement(1882..2058)
                     /locus_tag="VHF08_00510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067164.1"
                     /translation="MVLFIFMVKCSSCKEDFGTTPMTKKMNIEELSKDTVIVYYPFCD
                     VFLGIGKGRSSSSS"
     gene            2488..>4075
                     /locus_tag="VHF08_00515"
     CDS             2488..>4075
                     /locus_tag="VHF08_00515"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2067165.1"
                     /translation="MSSEIHHFYVELFAVILAAILSFYYIARAYTLNDKFSLFIGLGF
                     LANALIDLLHVIVSYTFMDEFLFLKYFIPQTWFAGRIFLSAMFAIAIAGYPALSSSAG
                     RSMKSSSTSLIGSRSSSGQLQAPESSRPSLRERNNNKKQEKIPKFLVASLVILTILSA
                     FIAISSLFIIYPGSVIDNFPLHRPYEIPALALFLVALFYFYKNQLYKKSDIFYKAILC
                     ALVIDIFGQIIMSYSATSFDTAHNVSHVLKDVGYFVNIIGLALSSIQYNAKLKEANRN
                     LIEREEIIRSQYDKLKESDKMKKEFINVAAHELRTPILPILATSQIIRPKVDDKQREY
                     IDVIIRNAKRLEQLAENILDVTKIESQSLKLNKERFNLNDVITNTIDDMILNRIFNNK
                     KNNNNDDGDNIKLEYRPKNIFVEADRVRMTQVISNLLHNAIKFTKEGGGGCISINIEK
                     EDNHILVSVKDTGTGIDPEILPRLFSKFVTKSYQGTGLGLFISKGIIEAHGGKIWAEN
                     NNKNNNNIVDGKKGSTFYFTL"
BASE COUNT         1434 a          619 c          654 g         1368 t
ORIGIN      
        1 actactacat cattattcga ttgcttgtat tagtgcagta gtataatata tgatcaatta
       61 ggttttcgat tttattttct atatcatagg tattcaatat ggaaaagctg gcattgtaag
      121 tattactatt taacatataa tcttcactta tttaatttgt ttcttgataa tacaatcgca
      181 tagataaatt tattattatc tattatattt ttgtgaaatc tcctcttttt atcactatcg
      241 tttcaatagt tactctttcc actagacttt gtgaatgtga gtaaaaatct tgtaattcat
      301 attagccgta gtctacatta gttaaagatt tatagtcacc tatacttcat aattttgaag
      361 ttatgatact aaaaagtata agttttggaa ctggtcttat taccgttgct atcgtattaa
      421 taacaattct aatgagtgtt ggtgctgatt tttcagcacc agatatagcc tatagccagt
      481 ctgttccttc tgttccttca gttccgacta gcgacagtat taatactgcc aataataata
      541 acaaagcagt tatcttaact tttgacgatg ggtacaaaag ccaatacact aatgccaagc
      601 caattttaga taaatacgga tataaggcta ctttctatat tgtctgcgag tatgtaggag
      661 gcggagaagg acaggttcat cctaatgtta aaatgacttg ggaagatata atagcactac
      721 acaatgaagg acacgatata ggatctcata ctatgagcca tgatgatctt gatggactat
      781 cagaagaggg gctagaatac gaaataggtg gatcaaaaga atgtcttttt gaccatggca
      841 ttattcctac aagcttttcc tatcctacta atacaggagc tcagaatgca gcagtagtca
      901 atacagttgc taaatattat gatatagcta gaactgctaa tgatccacta atgtatttac
      961 attgtgatgg atttaaagaa gaatcaagtc agactgattg tagaacattt tctgatgatg
     1021 gtgaacttac ctttgtaaat aggtactcta ttatgggttg gagtcatgat gctgagagga
     1081 aggataattc atatagtgat tctgaaatgt tagatagatt cattgaagtt gtcaatagcc
     1141 agtctgccta taatacagat ggtaaaataa atgcacttcc cataattata tggcacagaa
     1201 tagataatag cggagtaggt gatccagagc agtatgctac tactatagac ttatttgaaa
     1261 aagaaattaa atacttacat gataatggct ttaaggtatt gacaatggca gatctcggat
     1321 atgacgaaag cagcaattat ctatatttga aaagatagag agtaaggaaa atagagatac
     1381 gtagtatcac aatttataat ctaaaattca tcagtctctt ttcaatggat acatgttttt
     1441 tagttgcttg tacaaatctt ctccacatat ccaaggaaaa tcaggaatac caacaacttt
     1501 aattttgcca tcaacaactg tagtaggaac tgcttttacg tcatattcct tcatctttac
     1561 cttgatttct tctgtcatat tattaatatc ataaactatc tggttacaac cttcgcactt
     1621 accaatttga atgtcctctg taatatgctt gcacaatgga cagtttgctg aaaatatctc
     1681 aattaagtga tgctgtttca tttattcttg gtgtaagttt ttaatattta agtctaaatg
     1741 tatttggtta gttattatgt caacatcacc accagttaat tgacacctca agatttatag
     1801 aaaacatgga taaaggaaac aaaggtagta gcaataacaa tgagtgttat ttaattacat
     1861 aattgtcaat tttaaagagt gttatgatga cgacgatgac cttccctttc caatgccaag
     1921 aaacacatca cagaaagggt aatagactat tacagtatct ttagataact cttcaatatt
     1981 cattttctta gtcattggag tggttccaaa gtcttctttg caagaggaac atttaaccat
     2041 gaaaataaac aacaccatag cacactttat actttaattg cagatatcta ttggttatag
     2101 gtaactttag tttgttatgc tgctgaggtt gtgatggttg ttgttgttgc tgctgatata
     2161 tatatatata tatatatatc atcgagaatt cacgacgctt ttattataat ataataaata
     2221 atactcaata ataattgtta catttccatg atgaaataaa aagaaggtaa gttttttaac
     2281 ttaatagatc ttagtatatt accgtaggtt gtgggtagat aaatagtaag aataaaaaaa
     2341 gaagatagaa agaaagaaaa atcgccgctc cataattcat tctataatcc acaatttggt
     2401 aagtatgata ctctgataaa atattcaatt gtaccatcaa ttcctctttc aataatagct
     2461 attctatctt ttaatcctaa tacatggatg tcatctgaaa ttcatcattt ttatgttgag
     2521 ttgtttgcag taatacttgc tgcaatttta tcattttact acatagcacg tgcttataca
     2581 ttaaatgata agttcagttt gtttataggt ctaggatttc ttgctaatgc cttaatcgat
     2641 ttgttgcatg tcatagtatc ttatactttt atggatgaat ttctgtttct caagtacttt
     2701 ataccacaga catggtttgc aggaagaata tttctaagtg ccatgtttgc aatagcaatt
     2761 gcaggttatc ctgcattatc ttcttcagca ggaagatcta tgaaatcatc atcaacatca
     2821 cttattggtt caaggtcatc atcaggccaa ctacaagcac cagaatcgtc acgaccatct
     2881 ctacgagaaa gaaacaacaa caaaaaacaa gaaaaaatac caaaattcct tgtagcttct
     2941 ttagttatac ttacgattct ttctgcattc atagctatta gttcactttt tataatttat
     3001 cctggttctg taatagataa ttttccttta cataggccct atgaaatccc tgcacttgct
     3061 ttatttttag tagctttatt ttatttttat aaaaatcaac tttataagaa aagtgacatt
     3121 ttctataaag caatactatg cgcattagtt atcgatattt ttgggcaaat tataatgtca
     3181 tactctgcca cctcttttga tacagcacat aacgtatctc atgttttaaa ggatgtaggc
     3241 tactttgtta atattatcgg actagcatta tcaagtattc aatataatgc aaaattaaaa
     3301 gaagctaata ggaacttaat agaaagagaa gaaataattc gttctcagta tgacaagtta
     3361 aaagaatcag ataagatgaa aaaagagttt atcaatgtag cagcacatga actgcgaaca
     3421 cccatactac caatacttgc tacatctcag attatacgtc ctaaggtaga tgataaacag
     3481 cgtgaataca tcgatgttat tataagaaat gcaaaaagat tggagcaact tgcagaaaac
     3541 atactagatg ttacaaaaat agaaagccag tcattaaaac taaataagga aaggttcaat
     3601 ctaaatgatg taataactaa cactatagat gatatgatac taaacagaat atttaacaat
     3661 aaaaagaata ataataatga tgatggtgat aatataaaat tagaatatag gcccaaaaat
     3721 atttttgtag aagcagacag agtcaggatg acacaggtta tttccaatct actacacaac
     3781 gctataaaat ttacaaaaga aggaggagga ggatgtatct ctatcaatat agaaaaggaa
     3841 gacaatcaca ttcttgttag tgttaaagat acaggtactg gtatagaccc tgaaatatta
     3901 ccaagactat tctcaaaatt tgttacaaaa tcttatcaag gtactggctt gggcttgttt
     3961 atctctaaag gtatcataga agcccatgga ggaaagatat gggctgaaaa taataataaa
     4021 aataataata atattgttga tggaaaaaaa ggatcaacat tttactttac tctgc
//
LOCUS       DATAAS010000040         4348 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1647568, whole genome shotgun sequence.
ACCESSION   DATAAS010000040 DATAAS010000000
VERSION     DATAAS010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4348)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4348)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4348
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1647568"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(162..293)
                     /locus_tag="VHF08_00520"
     CDS             complement(162..293)
                     /locus_tag="VHF08_00520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067166.1"
                     /translation="MAKNVKSKICPICGCTEHRWIGCITHWNSHNKNIEGKCEMRHE"
     gene            complement(596..2560)
                     /gene="gatE"
                     /locus_tag="VHF08_00525"
     CDS             complement(596..2560)
                     /gene="gatE"
                     /locus_tag="VHF08_00525"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Glu-tRNA(Gln) amidotransferase subunit GatE"
                     /protein_id="HEX2067167.1"
                     /translation="MNLNGWHTIDPAAINLRVGFEIHQQLSTKSKLFCNCHCEETEKY
                     GFTFIRKLRPTQSELGIYDPAALFEFAKMRTIKYHAAAGSSCLVEADEEPPQELNKEA
                     IETALIFSLALHSKIIDEVHVMRKIVIDGSNTSGFQRTMLVASGGYLNINNNKRVGVQ
                     SICLEEDAAKLISDNGTIKEYGLDRLGVPLVEIALEPVTGKPEEIAEIALTLGRLLRA
                     SKKVARGLGSIRQDINISVDNGAIVEVKGVQRLDQLVKVIEYEVLRQHGLILIAQKLK
                     RERKLEEIVIGDRIEDITDILLKSHSNVVKRSLADNNGGIFKAIRVKGFDGIIGFEPY
                     PDIRIGKHLSELVRFYGLGGVFHSDELPNYGITKEEVEAIRKKLDLVVGIDAFIIVGG
                     PKDKVELAVEAITERLKMTLIGVPAETRAATLEGKTSFSRPRPGAARMYPETDIPPIP
                     INNSLLNSLSDKIPKSWDDSIKIIAEKYRMNKKIAEQIFDSNYFTTFEKIVGSVKIQP
                     TFVASKLTEDIVNLERQGFDTMLLTEDIVIDVFKKLDVGIIAKESIVLIFEKILRKEA
                     KTVDEAITALGITSMTDQELNIAIDRILEQNKTIIREKGTGSTGMLMGRIMATLRGKV
                     DGQKINLTLRERLENMITNLTDRNNNNNNT"
     gene            3269..3985
                     /locus_tag="VHF08_00530"
     CDS             3269..3985
                     /locus_tag="VHF08_00530"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEX2067168.1"
                     /translation="MQIKRFPVATASIITLNAVIFAIGLLSDSQTQIIQNYGFIPNDL
                     FYAGNANDDRNNNPADSAQQNPLSSLPLQSSEPQSSSSSPSLPESLTRLFTSMFIHAN
                     IAHIAFNLFALVYLGGYAERAIGVPRYVLVYLISGIVAALFHGIIASYILHNGDVVLV
                     GASGAISGVLGIAAAAGNSRAYYWLVLQIVFAVIGSVSALPIAFTAHVGGFIAGVLMT
                     KVLVKLEQTKRKKSRYFLQP"
     gene            complement(4121..>4348)
                     /locus_tag="VHF08_00535"
     CDS             complement(4121..>4348)
                     /locus_tag="VHF08_00535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067169.1"
                     /translation="VGGVCADTVIVGSVLVIIAVAPALNSSNINDIPTVKVYNEFLFM
                     PIIIYLKIYKIYSFEYATNNPFIGKIRGFNK"
BASE COUNT         1324 a          820 c          662 g         1542 t
ORIGIN      
        1 aagaggtatg aagaatttaa ttcataagga taaagtactg cgatacaaac tagaaactca
       61 gaagtatgtt gttccaatag cagaaaagac agacgaaaaa ctcgcattta aattatcaat
      121 tgctctatac gagctcaaat aggagaagta cattatcata tctattcatg tcgcatttcg
      181 cattttcctt cgatattctt attatggctg ttccaatgag tgatacaacc tatccatctg
      241 tgttcagtac aaccacatat aggacatatc ttcgacttta cattttttgc catgatcaat
      301 cactcttcat tcgactttac taattaccta tatatataat atatatattc attttacatg
      361 tctttcctga tctaatatag aaatactaat atagaaatat ataattaatc caaagaaatt
      421 tactcatcgt aaattggagc gagacgaaca aacgaacgaa caaaaggaat tcaataacac
      481 tatgttcgtt gcttttttgt gatgatttgt atttctatta gattttattt tgatatttcc
      541 aaattgactt attgtcattg gttatcaaaa ctaaatttct atactcagca ttacgctatg
      601 tattattatt attgttattt cgatctgtta ggtttgtaat catattctct aatctttctc
      661 ttaatgttaa attaattttc tgaccatcta ctttgcctct aagagtagcc ataattcgac
      721 ccattaacat tccagtagat cctgtccctt tctctctaat aattgtttta ttttgttcta
      781 aaattctatc aattgctatg ttcaattctt gatcagtcat cgatgttatt ccaagtgctg
      841 tgatcgcttc atcaactgtt ttagcctctt ttctcaagat cttttcaaaa attaaaacta
      901 ttgactcctt ggctatgata ccaacatcaa gctttttgaa gacatcaata acaatgtctt
      961 ctgtcaatag cattgtatca aatccttgtc gttcaagatt aacaatatct tctgtaagtt
     1021 ttgatgccac aaaagttggc tgtattttta ctgaacctac aattttctca aatgtagtaa
     1081 aataattaga atcaaaaatc tgctctgcaa tctttttgtt catcctatat ttctcagcaa
     1141 taattttaat gctatcatcc caagatttcg gtattttgtc tgataatgaa ttgagtaatg
     1201 aattgttgat cggaatcggt ggtatatctg tctcaggata cattctcgct gctccaggtc
     1261 ttggcctgct gaaagaagtt ttaccttcca atgttgccgc gcgtgtttct gcaggtacgc
     1321 ctattaatgt catttttaat ctttcagtta tagcttccac tgcaagttct accttatctt
     1381 ttggaccgcc tacaattatg aaagcatcaa tgcctacgac taggtctaat ttctttctaa
     1441 ttgcttcaac ttcctccttt gttatgccat agtttggcaa ctcgtcagaa tgaaatactc
     1501 ctcctagacc gtaaaatcta actaattcgc ttaggtgttt ccctattcta atatcaggat
     1561 atggctcaaa tccgattatg ccatcaaaac ctttgactct gatcgccttg aaaataccac
     1621 cattattatc agcaagtgac ctttttacta cgttagagtg tgacttgagt aaaatatctg
     1681 ttatatcttc aattctgtct ccaattacaa tttcttcaag ttttctttct ctttttaatt
     1741 tttgagcaat tagaatcaaa ccatgttgtc tgagaacttc atattcaatt acttttacca
     1801 gttgatcaag acgctgcaca ccttttactt ctacaatggc gccgttatct accgaaatat
     1861 taatgtcctg cctaatgcta ccaagtcctc tggcaacttt tttgcttgct cgcaacagcc
     1921 tgcctaatgt gagtgcaatt tctgcaattt cttcaggttt cccggttacc ggctcaagtg
     1981 caatctcgac tagtggcact cctaatctgt ctaatccata ttctttaatt gttccattat
     2041 ctgaaatgag cttggctgcg tcttcttcga gacaaatact ttgtacacca acccttttat
     2101 tattatttat atttagatat cctccacttg caaccaacat agtacgctga aagccactgg
     2161 tattcgatcc atcaattacg attttacgca taacatgtac ttcatctatg atcttagagt
     2221 ggagtgcaag tgaaaatatc aatgcagttt caattgcttc tttattaagc tcctgtggtg
     2281 gctcctcatc tgcttctaca aggcaactag aacctgctgc tgcatgatat tttatagtgc
     2341 gcattttcgc aaattcaaaa agtgctgcag gatcataaat tccaagttcg ctctgggttg
     2401 gccgcaactt gcgaataaag gtaaaaccat acttttcagt ctcttcgcag tggcaattac
     2461 aaaatagctt gcttttagtg gagagttgct ggtggatttc aaaaccaact cttaaattaa
     2521 tagctgctgg atcgattgta tgccacccat ttaaattaat attagatgtc ttttaagcct
     2581 tgcttatgaa acaggaataa cactagatat ttatattgtc actgagggaa tattgcatat
     2641 gcattattag atagtgacta tcaattgtct tatctaatgc ttgttccaat attttattga
     2701 atcttagtta atgcatattg tatatatata ctgaacattt cttatgagtt tcaatctttc
     2761 tttgaatctg ctaaacgcca atctacttaa aagtaattct ttccaaaatt aaatggttca
     2821 tcagtatcaa actttggccc ttcttttatc tcctttttat aaggatattc aaaatgtatt
     2881 ttcattatat tataatgcct gttctaaata agggacatga tggcacgggt tcggtgggac
     2941 acaatacact agtgtatgta atccattctg agagtataat gctcctcatc ccttaagata
     3001 aaagttttat ctttcttcat gcacagaggt ctataaaaaa tttaatataa actcaataac
     3061 ctgcagcggc tatgcagtca tatattagtt cactaattaa tatattaata ctctttctaa
     3121 tactccttgg gatgacccaa taggtagaat atctttggaa aaccaaaata actactactg
     3181 ccgataggct attgcaagat gaaaaaacag caacaatcga tatacctaaa ataaactatg
     3241 ttattcatta tctattgtct agccaatcat gcaaataaag cgttttccgg tagccacagc
     3301 atccatcatc acattaaatg ctgtaatttt tgccatagga ctgttatcag attcccaaac
     3361 acaaattatt caaaattatg gctttattcc taatgatctt ttttatgcgg gtaatgcaaa
     3421 tgatgatagg aataataatc ctgctgacag tgctcagcaa aatccattgt cttctctacc
     3481 actgcaatcg tcagaaccac aatcatcatc atcatcacca tcactacctg aatccttgac
     3541 aagattattc acatctatgt ttatacatgc taacattgca catattgcgt tcaatttatt
     3601 tgcgttggtt tatcttggtg gatatgcaga aagagcaatt ggagttcccc gatatgtatt
     3661 ggtatatctt atatcaggaa ttgtagcagc tttatttcat ggtattatag cgtcatatat
     3721 cttacacaat ggagatgtag tactggtagg tgcgtcagga gctatctctg gtgtattagg
     3781 aatagcagca gcagcaggca attcaagggc ctattattgg ctggtgctac aaattgtatt
     3841 tgcagtgatt ggctctgtaa gtgcacttcc aatagcattt actgctcatg ttggcggatt
     3901 tattgcaggt gtattaatga ccaaggtatt agttaagtta gagcagacaa aaagaaaaaa
     3961 atcaagatat tttctgcagc cgtgaaagaa aagaggtaat gcttaccact aactatcaaa
     4021 aggtagaatt acattttttg aatcaatatt atacacataa gtatttgaca taaaaggtaa
     4081 tggaacaatt gttgcattaa gtggtgtaat taaggctttt ttacttatta aatcctctga
     4141 ttttacctat gaatggatta ttagttgcat attcgaagga gtatatctta tatattttca
     4201 agtaaattat aatgggcatg aataaaaatt cattatacac ttttactgta ggaatgtcat
     4261 taatattgct actattaagt gcaggagcaa cagcaattat tactaatacg cttccaacta
     4321 tgactgtatc tgcacaaaca ccacctac
//
LOCUS       DATAAS010000041         2338 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2727120, whole genome shotgun sequence.
ACCESSION   DATAAS010000041 DATAAS010000000
VERSION     DATAAS010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2338
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2727120"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            257..1084
                     /locus_tag="VHF08_00540"
     CDS             257..1084
                     /locus_tag="VHF08_00540"
                     /inference="COORDINATES: protein motif:HMM:NF016312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA];
                     GO_function: GO:0051499 - D-aminoacyl-tRNA deacylase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HEX2067170.1"
                     /translation="MEYSYFTLVASKQDPASMTMANYLIHDKDFSVYDKKNNNEEYTS
                     EVYKKIKLHISHESLLYIEDLDTKYPHSKAFIFLSKHRSESRIPTLTCHCTGNYADNP
                     YGGNVKELAISYPYLQKRYLKEINNSKLSLSYYQIVIEASHHGPTSLKKPVLFIEIGS
                     TEMQWIDRNAASIVCNCLLRVLLNGLGQCEKVGIGLGGTHYPSKFNKLLLETEFGLAA
                     VAPKHNLESVDKDMLNQMIAKSIETVTHIIVDWKGLGKEKNRIMGLVEDTGLEVLRV"
     gene            1769..2113
                     /locus_tag="VHF08_00545"
     CDS             1769..2113
                     /locus_tag="VHF08_00545"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: protein motif:HMM:NF013222.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003908 -
                     methylated-DNA-[protein]-cysteine S-methyltransferase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HEX2067171.1"
                     /translation="MTETHRKVSNFFMKDKYVYKLLMEIPAGKIATYGDIAKALGHPF
                     AARAVGNILNKNPNPIVVPCHRIICSNGKMGGYAYGSIAKRKLLEKEGIKFQNGSVKD
                     FATCRIALKKAK"
     gene            complement(2119..>2338)
                     /locus_tag="VHF08_00550"
     CDS             complement(2119..>2338)
                     /locus_tag="VHF08_00550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="50S ribosomal protein L19e"
                     /protein_id="HEX2067172.1"
                     /translation="GAGSKKGKKTARTGKKEAHVIRVRSMRYHLKVLKDRNDITRETY
                     WLLYKKVSGGQVRSLAHLRDLIKQSKTH"
BASE COUNT          838 a          341 c          381 g          778 t
ORIGIN      
        1 tctctggcaa taatataata ataataagaa accattcttt gattgtaaat caattagtta
       61 ttttaatgat gtcaccttta tgcaatactg gtgctttttt ccaatatctc tataagattt
      121 ctcaatgtgc tgactattcc attattacac tttctattgt cagtaaaaaa tgaatgaagt
      181 tatatatact atttcttagt tttataatcg tttattgttg tcataattta ttattagtta
      241 gttataatct ctcatagtgg aatattccta ctttactctt gttgcctcaa aacaggatcc
      301 ggcaagtatg actatggcta attacctgat acacgacaaa gatttttctg tgtatgataa
      361 gaagaataat aatgaggaat atacctcaga agtatataaa aaaattaaac ttcacatctc
      421 tcatgaaagt ttactctata tagaagattt agatacaaaa tatccccatt caaaagcctt
      481 tattttttta tcaaaacata gatctgaaag cagaatccct actttaactt gtcattgtac
      541 tggaaattat gcagataatc cctatggtgg aaacgtgaaa gagttagcaa tatcatatcc
      601 atatttacaa aaaagatatc tgaaggaaat taataattct aaactctccc tatcatatta
      661 tcagattgtt atagaagcaa gccatcatgg acctacatcg ttaaaaaaac ctgttttgtt
      721 tattgaaatt ggttctacag aaatgcagtg gattgacaga aatgctgctt ctatcgtatg
      781 caattgtctc ctaagagtcc tcctaaatgg attaggacag tgtgaaaaag ttggaatagg
      841 tttaggtgga acacactatc cttcaaaatt taacaagttg ttgttggaga cagaattcgg
      901 ccttgctgct gtggctccaa aacataattt agaatcagtt gataaagata tgttaaatca
      961 aatgattgca aagagtatcg agacagttac tcatataata gttgactgga aaggacttgg
     1021 taaggaaaaa aataggataa tgggactagt agaagatacg ggtctcgaag tgttgagagt
     1081 ttgatatagt tattactatg atgcattaat ttgtaagaat ttcataggta acaaaagaat
     1141 gacagcatta aatatactgt ataaaatagg ttgagagcca tcatctgtcc gatatgtgga
     1201 gtatatctat tatagaactc tctatgttta agaaataaga gttgataacc attaaatcaa
     1261 agaagatcat ggtgagattg gtttttacat gaacataatc ctaattctca cttaaatctg
     1321 aataataaat caaaatggat ttgaaaaagt agatacattg aaaatgataa ggaatctttt
     1381 catgagtgtt gaaactaata cagaagaaac taagtcgata atgaaaacat aaatcttctt
     1441 cgcgttgata caccctcatg aaaattgttg aatgatacag accagataca attggattgt
     1501 tcacgccatt tatctttttt atataaatgc aattgaaatg aaatagattt gaaaaataca
     1561 atgaatatag tttgatatag tcacaaaaat ttactattat taaacagtct gcaaaaagag
     1621 tattaggaat aatctatatt caattaatct tgaaatcgat tgttgtgaat aaacatgtgt
     1681 tttacttata catacatctg aattgaatta cttttgatag atatttttat atagaaagac
     1741 tgttgttttt gcactataga taaccttaat gactgaaaca cataggaaag tctcaaattt
     1801 cttcatgaaa gataaatatg tttacaaact tctaatggaa attcctgcag gcaaaattgc
     1861 cacatatgga gatattgcta aagctctagg tcatcctttt gctgcgcgtg cagtaggcaa
     1921 tattctaaat aaaaatccaa atccgatagt agttccctgt catagaatta tttgttcaaa
     1981 tggtaagatg ggaggttatg catacggctc gatagcaaaa agaaagctat tggaaaaaga
     2041 aggaataaaa tttcaaaacg ggagtgtaaa agattttgct acatgtagaa tagctttaaa
     2101 aaaggcaaaa tgatagagtt aatgagtttt tgattgtttt ataaggtcac gcaggtgagc
     2161 caaggatcgt acctgacctc cactaacttt tttataaagc aaccagtacg tttcacgagt
     2221 aatatcattt ctatccttta ataccttcaa atgatatctc atcgatctaa ctctgatgac
     2281 atgtgcttct ttcttaccag ttctcgctgt ctttttccct ttctttgaac ctgctcca
//
LOCUS       DATAAS010000042         3745 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3268306, whole genome shotgun sequence.
ACCESSION   DATAAS010000042 DATAAS010000000
VERSION     DATAAS010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3745)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3745)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3745
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3268306"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..612
                     /locus_tag="VHF08_00555"
     CDS             <1..612
                     /locus_tag="VHF08_00555"
                     /inference="COORDINATES: protein motif:HMM:NF013183.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-binding protein"
                     /protein_id="HEX2067173.1"
                     /translation="WLIISGGLGPTYDDKTLQGVALGLGVELVLDNTAVEMLKNSYTR
                     HSTNYELNEIRLKMARIPKGSIPIQNPVGNAPSVLIDAAGTNIVCLPGVPKEMEAIFL
                     ESILPQIKKKIGEFHIAQSIYEIIGISEAMLEPTLSKIVESNPPDLIYLKTHPQGYTS
                     NNIPRLRLQILSKGKDKSEVERRYSNISNMLVEEIRRLDGKIL"
     gene            complement(710..1864)
                     /locus_tag="VHF08_00560"
     CDS             complement(710..1864)
                     /locus_tag="VHF08_00560"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2067174.1"
                     /translation="MVIVINRTSVFSLIFARILYSINWFNIASIFYFIASDFKQDISM
                     LGLITSSFLIGIGIFQIPAGILAAKYGPRKIAIYGILITSSAAFLSGLSTDLFHMIIL
                     RFIVGLGMACFFGPSVILISKYLGKGSEGLGVGLLNSAHALGGIIGIFGWIILAEVTG
                     WRISLMLSGLLGIATGLLLIIALIREKIQIDFGIKISELRQILFNKSLIVLGLALLGF
                     QIGSNLTLTFIVFYLADHLNIDPTIAGFVGSFNLIIALVSSPLFGKIYDRIKDAKKLL
                     IISGIVMSSSMAMIAANTLYVIILSIIIAGFFLAGGFVIVYTKAKQVKGLHAEYETLA
                     VSYVNGISLFNAFWVPIVFSYIVNQSGYSMAWFLGGFLTLLLVLPLFKLK"
     gene            complement(2212..2640)
                     /locus_tag="VHF08_00565"
     CDS             complement(2212..2640)
                     /locus_tag="VHF08_00565"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX2067175.1"
                     /translation="MLSKILVPVDGSENSFRALEHAIFLSTKIEGAQTTVTYIIEAPP
                     SVYIYSPKVMDKVRADYKSESARILERCKDMANNSGINIHTVIIEGDPASKIIGYSEM
                     EKFDIIIIGSRGMGQFKEMILGSVSNKVLHHAKCSVMVVR"
     gene            complement(2861..3508)
                     /locus_tag="VHF08_00570"
     CDS             complement(2861..3508)
                     /locus_tag="VHF08_00570"
                     /inference="COORDINATES: protein motif:HMM:NF016382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease V"
                     /protein_id="HEX2067176.1"
                     /translation="MFSDDLSIYSDVIELQKEIAKNVISEDTLHKEIEYICGVDVSYK
                     KNTAFCSAVIMKKNTLELIESVNTKSIVKHPYIPGLFILRESEPILTTLKLLKNHYDL
                     LLIDGHGILHPRKCGLASYIGVLIDKPTIGVAKSILCGSIMEDQFVRYDGTVLGFTIK
                     KEGKKQIYVSVGHKISLTTAIQIIKRLIKKEEWVPEPLRIADLNSKNYLNFGQDI"
BASE COUNT         1263 a          645 c          590 g         1247 t
ORIGIN      
        1 tggctaatta tttctggagg tcttggtcct acttatgatg ataaaactct tcaaggcgtt
       61 gcgcttggtt taggtgtgga acttgtgctc gataatacag cagtagagat gttgaaaaat
      121 agttatacgc gacattcaac aaattatgaa ctaaatgaaa ttcgattaaa gatggctagg
      181 attccaaagg gatcgatccc aatccaaaac cctgttggca atgcaccctc agttctaata
      241 gatgctgctg gaacaaacat tgtttgtcta ccaggcgtgc ctaaagaaat ggaagcaata
      301 tttttagaaa gtatacttcc acagataaag aaaaagattg gtgagtttca tattgctcag
      361 tccatttatg aaataattgg tattagtgaa gcaatgcttg aacctactct atctaagata
      421 gttgaatcga atcctcccga tttgatttat ctaaaaactc atcctcaggg atatactagc
      481 aataatatac caaggttgcg tctgcaaatt ctttcaaaag gaaaagataa atctgaagtt
      541 gaaaggagat attccaatat ctcaaatatg cttgttgaag aaatacgcag gctagatgga
      601 aaaatactct gaagttctgt gtgctaactg tatatagaaa caagggttat tattattaag
      661 cttacaatta tgatacttaa gcaatggata gtaatttaaa catttgagat cattttaatt
      721 tgaataatgg caatactagt agaagtgtta gaaaaccgcc taagaaccaa gccatagagt
      781 atccggattg atttacaata tatgaaaata ctattggtac ccagaaggcg ttaaataatg
      841 aaataccatt gacataactg actgcaagtg tctcatattc agcatggagt ccttttactt
      901 gttttgcttt agtatagact attacgaaac cgccagccag aaaaaatcct gcaataataa
      961 ttgaaagtat aataacatat agtgtattag cagcaatcat tgccatactc gatgacatta
     1021 cgatcccaga gatgatcaac agcttcttgg cgtccttgat tctgtcgtag atttttccaa
     1081 ataaaggaga agacacgagg gcgattatca aattaaagct tcccacaaaa cctgctattg
     1141 taggatctat attcaagtga tctgcaagat aaaagacaat aaatgtcaat gttagattgg
     1201 atcctatttg aaaaccaagt agcgcgagtc caagtacaat aagagatttg ttaaataata
     1261 tctgacgtag ttctgatatt ttgatcccaa aatctatctg tattttttct cttatcaatg
     1321 caatgattaa taataaacca gttgctatgc ctaatagccc acttaacatt aagcttattc
     1381 tccaaccagt aacttctgct aatatgatcc atccaaaaat accgattatc ccacctagag
     1441 catgtgctga attgagtaat cctactccta agccttctga tcctttcccc aagtactttg
     1501 aaattaagat aacactaggg ccaaagaaac atgccattcc taaaccaact ataaatctca
     1561 atattatcat gtgaaacaag tcggtagata gtccagaaag aaatgctgca gatgaagtaa
     1621 tcaaaattcc ataaatggca atctttcttg gaccatattt tgcggcaagg attcctgctg
     1681 gtatctgaaa tatgcctatg cctataagaa agcttgatgt aatcaatcca agcatagaga
     1741 tgtcttgttt gaagtctgaa gctatgaagt aaaagataga agctatattg aaccaattta
     1801 tagagtatag tattctcgca aatatcaaag aaaagactga ggtacgattg attactatga
     1861 ccatctacac gccatactat tgaatctatt tctttattat gtaaaaatgt ttattatagt
     1921 cagtaatatt taatcctaca tatcacaagt aacctgtgat atttctttgt gccttgaaaa
     1981 cttcttttaa attattgata gcagcaagca agatctacca cttattgtta gagacgcaag
     2041 ataaaatgag tttttcgttt gcataatatt tttttagtgt aatgtgtata tccgattctt
     2101 gtatcggtta ggctttacgt aattgtacgt ttctatttct aatttatctt tattttttgt
     2161 tttagcagag attttttaaa agatataaaa aatattcgtt atttcatagt attacctgac
     2221 taccatgact gaacattttg catgatggag aactttattt gatacgctgc caagtatcat
     2281 ttccttaaac tggcccatac cacgactacc aattattata atatcaaatt tttccatctc
     2341 gctatatcca ataattttgg aagcagggtc gccttctata ataacggtat gaatatttat
     2401 tccactgtta ttagccatat ctttacatct ttcaaggatt cttgcagatt cgcttttata
     2461 atctgcacgg actttatcca taacttttgg tgaataaata taaacactag gaggagcttc
     2521 tattatataa gtgactgtcg tttgtgctcc ttctattttt gttgataaga aaatagcatg
     2581 ttctaatgct ctaaatgaat tttctgaacc atccactgga actaatatct ttgatagcat
     2641 tgtcacttct tattaacgat atgattaaat tctttgctat tgtcatgagc acttgtattg
     2701 agtatagatg ctcaacttta gtttatacat catgctgtaa attatatatc cccttcgagc
     2761 ctaattatca gataattggt tcaaatatac atacacacac ctatgagacg tcagacttaa
     2821 atactacaag agttatcaaa ctaatttaac caattcgcaa ttaaatatct tgaccgaaat
     2881 ttagataatt ctttgaattg agatctgcaa ttcgtaaagg ctctggaacc cattcttctt
     2941 ttttgattaa cctcttgata atctgtattg ctgttgttaa actgattttg tgaccaacac
     3001 ttacatagat ttgtttctta ccttcttttt tgattgtaaa tcctagaaca gtaccatcat
     3061 atcgtacaaa ttggtcttcc attatagaac cacaaagtat actttttgca actcctattg
     3121 tcggtttatc aattaagaca cctatgtaac tggccaagcc acattttctt ggatgcaata
     3181 ttccgtgtcc atcgattagt aaaaggtcat aatggttttt taacaatttc aacgtagtta
     3241 gtataggttc tgattccctt aatatgaaaa ggcccggaat atacggatgc tttacaatac
     3301 tcttagtgtt gactgattca atcaactcca atgtattttt cttcattatt acagcagaac
     3361 aaaatgcggt attcttcttg taagatacat ctacaccaca aatatactct atctctttat
     3421 gaagggtatc ctcggatatt acatttttcg caatttcttt ttgcaattct attacatcag
     3481 aatatattga caaatcgtca ctaaacataa tatatattga atatatttat aatcaataag
     3541 tagtaaaagt aactactgga agaagcaact tgatcgaaga aatactaaag aaacagcaag
     3601 agacataatc ttgtgtatac tcacatcgta atgatagtca agaatatgca actaaaaaat
     3661 tgtatgtatt attaatgaat acaaaaagga atcagaaatg accaagacta ggatccagat
     3721 atacggagtt catctgatca gttct
//
LOCUS       DATAAS010000043         1617 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_568989, whole genome shotgun sequence.
ACCESSION   DATAAS010000043 DATAAS010000000
VERSION     DATAAS010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_568989"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(184..1257)
                     /locus_tag="VHF08_00575"
     CDS             complement(184..1257)
                     /locus_tag="VHF08_00575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2067177.1"
                     /translation="MIIFFTSPIGLGHATRDIAIAEKLGFFTKEKILFITGQAAFNII
                     SNKGFLAHDVYKPDKFDVDNLMQLHSPLKWILQYIQYYKKCKVIAGEFIEKNNKNNGL
                     IISDEDFASIAVGEKRKRKRILITDLMKTHFVKGSFFSLIESSMNRSMQNMIKRCDRV
                     IIPDYGKNKDNISYVGPIVRELSTTDRVMLRKRFGIDKQTILVSIGGTEAGKYLIEMA
                     IKAYEKLKRRMDIDMIIASGPSSLDIFGNNNYYTNYKSFRNIGFVFNLHEYVYAADLI
                     ISLAGRSTIDESLVYGTPGIFIPIKNHFEQEENARKLGFKYDDIFRLESLIEEKVGTP
                     RYNRDNIKNGVEKAARIILEMIE"
BASE COUNT          540 a          280 c          185 g          612 t
ORIGIN      
        1 gggaaaaaga taccaataaa tttcttataa tataatagaa ttacctaatt cccttggaag
       61 atgttgcttg aaactatcaa actgttcata ataataataa tttataaatc attactaaca
      121 gcgagaaact taaaactact aatcttttgt ttattttgca agcggataac ttttgttctg
      181 ttattattcg atcatttcca agataattct tgcagccttt tcaacaccat ttttaatatt
      241 atctctgtta tatctaggtg taccaacttt ttcttctatt agagattcca gcctaaatat
      301 atcatcgtat ttaaaaccta actttcttgc attttcctct tgttcgaagt gattcttaat
      361 aggaatgaaa atcccaggtg ttccgtaaac aagagattcg tctatagttg atcttccagc
      421 taaggatatt attaaatctg ctgcatagac atattcatgt aaattaaata caaatcctat
      481 attcctaaaa cttttataat tggtataata attattattg ccaaaaatat ctaatgatga
      541 cggtccagaa gcaattatca tatctatatc cattctcctt tttaattttt catatgcttt
      601 gattgccatt tcaattaagt attttccagc ctctgttcca ccaatactaa ccaatattgt
      661 ttgtttatct attccaaatc ttttacgtaa cattactcga tcggtagtac ttaactctct
      721 tacaattggg ccaacatatg atatgttatc tttattcttt ccatagtctg gaatgataac
      781 acgatcgcat ctttttatca tattttgcat agatctattc atacttgatt caatgagtga
      841 aaaaaatgat cctttaacaa aatgagtctt cattagatca gttatcaaaa ttctttttct
      901 ttttctcttt tctccaacag caatagacgc aaaatcttca tcactaatta tcaatccatt
      961 gtttttatta tttttttcaa taaactctcc tgcaattacc ttgcattttt tataatattg
     1021 aatatattgc aaaatccatt ttaatgggga gtgtaattgc attaaattat ctacatcaaa
     1081 tttatcaggt ttatatacat catgagccaa aaatccttta tttgaaataa tattgaaagc
     1141 agcctggcca gtaatgaata aaattttctc tttagtaaaa aaacctaatt tttcggcaat
     1201 tgcaatgtct ctagtggcat gccctaatcc tatagggctc gtaaaaaata taatcattgt
     1261 ttatatatat tatataggtt agcctatgat aatattatta ttaactttgg cgtgaaaagt
     1321 attctctaat catttaagaa catattctat cattattttc taaattcttt atcagaaaac
     1381 tcagtatgat aatacttgaa atctatttat tgttagtatg attgcaaaat atgatcttta
     1441 ttctgatggc agaattgcat caaatctgtc ctacatgcgc cacctcttca tccaatctca
     1501 cattatagtt gccgcaatca tcatccacat tctcaaaccc atacaatcaa aatgacacct
     1561 aaagaataaa agggctagaa atttatcata ttagcaaaga cgatagtgat aattgat
//
LOCUS       DATAAS010000044         2024 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3810701, whole genome shotgun sequence.
ACCESSION   DATAAS010000044 DATAAS010000000
VERSION     DATAAS010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2024
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3810701"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(408..1190)
                     /locus_tag="VHF08_00580"
     CDS             complement(408..1190)
                     /locus_tag="VHF08_00580"
                     /EC_number="1.1.1.47"
                     /inference="COORDINATES: protein motif:HMM:NF005559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glucose 1-dehydrogenase"
                     /protein_id="HEX2067178.1"
                     /translation="MIQTNKAKVAVITGSSKGIGKAIATEFAKASYDLIINARDEEEL
                     KRAAEDISKLISDNNRIVPVAGDISQEQVCISLIEEAIRRFGRIDVLINNAGVGGEPR
                     KINELTSNDWDEVLDINLKGAFLCTREAVKYMLGKLSSDNNYSIINISSVHESMPHPG
                     GAPYAASKGGMEMLTKTVALELADKGIRVNGIAPGAIATDMNKEVLEDKEKKKETEKG
                     IPVKRIGQPQEIAKVALFLASSDASYITGTTIYVDGGLTLSS"
     gene            complement(1747..>2024)
                     /locus_tag="VHF08_00585"
     CDS             complement(1747..>2024)
                     /locus_tag="VHF08_00585"
                     /inference="COORDINATES: protein motif:HMM:NF012680.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="KOW motif-containing protein"
                     /protein_id="HEX2067179.1"
                     /translation="FEALHGVRHVRGQIRGELPFKDIEGYLVKKPVVTELNIDDTVEV
                     IAGPFKAMKAKITRVDYEKQEATVILLDSPYQIPVTVDANYLKKLIQ"
BASE COUNT          615 a          372 c          292 g          745 t
ORIGIN      
        1 agttagtaat aacagtcatt tattttgaat aacaatattc gatgtcatgc aattacatta
       61 aattaagtta aattaagttc agttcatttc attgccaaca taattaatca ataaatgcaa
      121 tcttatatgc acagacaaag agacatcttc aaggtagcat ttttctaata tcacaagagc
      181 accgaaaaat ttgagacact tatttatact taaaaccgca actctttatt actatacagc
      241 aagaagtcga tggtgtttac cataattata agaaccgata ttactagcac ttttgtaata
      301 ttcttttatg ttaaatgtaa tttttgtttg gaataatatt tgcgttttcc aatgtctttc
      361 ctaataaaat gtctgactat atataataat aagaaaaata atgaaagtca agaagacaaa
      421 gtaagaccgc catcaacgta gattgttgtt cctgtaatgt agctcgcatc acttgacgct
      481 agaaataatg caacctttgc tatttcttgt ggttgtccta ttctttttac agggattcct
      541 ttctcagttt ccttcttctt ttccttatct tcgagcactt ccttattcat atcagtggct
      601 atagcacctg gtgcaatacc gttaactcgt atacctttat cagccagctc caaggcgaca
      661 gttttagtta gcatttccat gccacctttt gaagcagcat agggagctcc tcctggatga
      721 ggcattgatt cgtgtacaga agatatattg ataattgaat aattattatc actgcttaat
      781 ttccctaaca tatattttac agcttctctc gtacatagaa atgcaccttt tagatttata
      841 tccagaacct catcccaatc attagatgtc aattcattta tcttccttgg ttctccgcct
      901 acacctgcgt tatttattag aacatcaatt cttccaaatc tcctaatagc ctcttctatt
      961 agtgatatac atacttgttc ttgggatatg tctcctgcta caggtacaat tctattgtta
     1021 tcactaatta attttgaaat atcctcagca gctctcttta attcctcttc atctcttgca
     1081 tttattatta gatcataaga tgctttagca aattctgttg caattgcttt gccaatacct
     1141 ttgctagaac ctgtaattac tgctacctta gctttattag tttgaatcat attttatcga
     1201 tcaaaaatat tcggtgataa atatatagtt agttaatagc attcgggtag aaaagcaagc
     1261 aaatatgtct tccttattat atgtatagag aagtaaggtt tcacgacttc atcaatatca
     1321 ctctataaac aaatgcatag ttgacattga gctagtcttt catccttaca tatatatatg
     1381 tagaattcaa ttcgttagtg tttttagatg atttaatcaa tccaattttt agacacaaac
     1441 tatgaggata ataaaaaatt gttagaaggt ttctattgtg tatagttaat tatcagatca
     1501 aatttgttaa aggcgataat ataacaatca cagtctctat tgcttttgtt cgtcggtcga
     1561 tgaagaatta agctttcggt gtgcactcgc aattacttcc tattctctct ccttagaatc
     1621 tgtttgtcaa tgccaattat ctccgctttg ctattgaatc aacgtcttag ttaaatattg
     1681 ttccagactg aattcctaat ttctttatgt ttttagaaaa atattgataa tagtgaggat
     1741 gcgcttttat tgaattaact ttttcaaata gttcgcatcc actgttacag gaatttgata
     1801 gggagaatca aggagtatta ccgtggcttc ttgtttttca taatcaactc ttgttatttt
     1861 tgccttcata gccttaaatg gaccagcaat aacttcgact gtgtcgtcta tattgagttc
     1921 agttacaact ggttttttaa caagatatcc ttcaatatct ttaaaaggca actctccacg
     1981 gatctgtcct ctgacatgac gaacaccatg caacgcttca aagg
//
LOCUS       DATAAS010000045         2604 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1655096, whole genome shotgun sequence.
ACCESSION   DATAAS010000045 DATAAS010000000
VERSION     DATAAS010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2604
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1655096"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..336
                     /locus_tag="VHF08_00590"
     CDS             <1..336
                     /locus_tag="VHF08_00590"
                     /inference="COORDINATES: protein motif:HMM:NF021287.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAC2 family protein"
                     /protein_id="HEX2067180.1"
                     /translation="KTNISTMDVGSITGMNGLIIGIAKLRGMKGTCLLGETSGYVVDA
                     KASKSILETLISILGIKIDMATLEKRAKDTEMLIKTIEQQMAGRSGRLLEGQQTGSQG
                     KPPNMGYIS"
     gene            complement(580..867)
                     /locus_tag="VHF08_00595"
     CDS             complement(580..867)
                     /locus_tag="VHF08_00595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEX2067181.1"
                     /translation="MNIGDLKPGMRGVSIEGTIDSLTEPRTVNLRAGGTAQVADAVIS
                     DETGTIKLSLWDDQINMVKQGDRVSIENGYTQAFRGENSLNIGRYGNLKKV"
     gene            complement(911..1051)
                     /locus_tag="VHF08_00600"
     CDS             complement(911..1051)
                     /locus_tag="VHF08_00600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067182.1"
                     /translation="MPKPETVSKLCVKCHSKTVHEIREKTIVGIKLVCTDCGQSMTVM
                     NI"
     gene            1197..1323
                     /locus_tag="VHF08_00605"
     tRNA            join(1197..1236,1276..1323)
                     /locus_tag="VHF08_00605"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1233..1235,aa:Leu,seq:caa)
     gene            complement(1738..2133)
                     /locus_tag="VHF08_00610"
     CDS             complement(1738..2133)
                     /locus_tag="VHF08_00610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067183.1"
                     /translation="MPKAGFKSITVSENVYKKFFDVYIRSKKDLELKGITSFSGYLTS
                     MMEEMIIKYEVFAKHAPFIEKIAIDQNRVIVKDNKRNRIAEILLKNGELQCLLDERAD
                     CVHVGFVYSLPELYSLISNKGIRMPRSLY"
BASE COUNT          880 a          464 c          423 g          837 t
ORIGIN      
        1 aaaacaaata tttcgacaat ggatgttgga agtataacgg gaatgaacgg acttatcatt
       61 ggaattgcga aactgcgtgg aatgaaaggg acctgtctat tgggagaaac ctccgggtat
      121 gtagttgacg ctaaggcatc caagtctatt cttgagacct tgatttcgat acttggaata
      181 aagatagata tggcaacact tgagaagaga gcaaaagata ctgaaatgtt aattaaaact
      241 atagaacaac aaatggcagg aagatcaggc agattgttag aaggtcaaca gacaggttca
      301 caaggtaagc cccctaacat gggatatatc agctaatgga tttttctcat attgagtcta
      361 gaatctgtat tcatagtatc aatgaaagta ggagattcct tcaaaaagat caatcactat
      421 tcaacaaaca gatttttatc attattttca tatatacttc agtggaaaat cgcattagat
      481 tgaaaatatc aaccctgtaa ctatacgtat tctgttatta attgtctaac gcttatgcca
      541 tgtaatatcc ttattgtata tcatattaga aatgtaggat taaacctttt ttaagtttcc
      601 gtaccttcct atgttcaagc tattctctcc tctaaacgcc tgagtatatc cattttctat
      661 agaaacccga tctccttgct ttaccatatt aatctgatca tcccataacg agagctttat
      721 agttcccgtc tcgtctgaaa taacagcatc tgcgacttgg gcagtccctc ctgctctaag
      781 attcacagtt cttggttcag taaggctatc tatcgttccc tcaatgctta ccccacgcat
      841 tcctggtttt agatcaccga tattcatctc tcttagaact tcagctattt gttataataa
      901 aggttctgga ttagatattc atcacagtca tcgattgacc acaatcagta caaactagct
      961 ttattcctac aatagtcttc tctcttattt catgaacggt ttttgaatga cattttacac
     1021 ataatttaga aactgtttct ggtttaggca tatcatcttg ttacacctta tttattgaat
     1081 taatagagta aaacaattac tttaactttc tgaaactgtt catgaatatg gtaaatttta
     1141 ttcgattgaa tagcaaacat gaaataaggt taaaacaaaa agcgcgtgta tataatggag
     1201 gggtagcgaa gcctggtcaa acgcgcagga ctcaagatcc aagcggaatt ttgaaaaagg
     1261 gattgcatat gagtcatccc gtcccttagg ggttcgtggg ttcgaatccc actccctcca
     1321 ccaccaaagc aaacagttag tggttgagaa agttaatcgt atatatgatt gtaggataat
     1381 gcacaagcca aaaacaaatt cagaaaatat tgtttctatt agacatgcgc tttctgaatg
     1441 cggagtgcat tatcagatag agagtaagca tacgaagatt gttaacgatc aaacaagtct
     1501 ccttatgaga actattatcc attttaatgt atacattggt gataccagat caacaacttt
     1561 taagcgacat ctttctgcac ttaggcctca gcgaaatcaa atttgacatc aattttgcag
     1621 aatctttgag ccaaaccagc agatcacaca aaaatctgaa aagaggaaga gaaatagact
     1681 ttagaaaagt aataactatt caactcattt ataataaaga taatcataca atcgtgatta
     1741 ataaagagat cgaggcattc taatcccttt attgctgatt aaagagtata attcaggtaa
     1801 tgaatataca aaaccaacgt gaacgcaatc tgctctttca tctaaaagac attgtaattc
     1861 tccatttttt aacaagatct ccgcaattct atttcgctta ttgtctttta caattacacg
     1921 attctgatct attgcaattt tctctataaa aggagcatgt ttagcgaaca cttcatattt
     1981 tattatcatt tcttccatca tacttgtaag ataacctgaa aaactcgtaa taccttttaa
     2041 ctcaaggtct tttttactcc ttatgtaaac atcaaagaat tttttataaa cattttcact
     2101 taccgtgatg gatttgaagc ctgcctttgg cataatagag tacggtaatg gacggaataa
     2161 tataagattt atcctcacta gattgtaatt atgagatatt atgcaaaata aatttaaaac
     2221 aaaaagatgt caaacatgca ctgggttaaa tctgaacata gtaataaata taactgccgt
     2281 aaatctgcct tataatctat atatttgttt attaatattt agattttctt aatataaaca
     2341 cgcttttcgt agaacattct aatttctaga aaaactaatg ataataaaag actctgtgat
     2401 gttttcctaa tggaacccgc tgaacaacaa ataccatcaa caaaaaattc aaaagatatg
     2461 aataatgtat cttattgcga gcagtgtaac agcgacaccg ttattttcga tatggtttct
     2521 agcgaatatg tatgtagttc ctgtggttgt gttgcgaatg ctgaaatctt taccagcgat
     2581 cataatagca gttattcgtc tcaa
//
LOCUS       DATAAS010000046         1893 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_36012, whole genome shotgun sequence.
ACCESSION   DATAAS010000046 DATAAS010000000
VERSION     DATAAS010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1893
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36012"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            51..329
                     /locus_tag="VHF08_00615"
     CDS             51..329
                     /locus_tag="VHF08_00615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067184.1"
                     /translation="MSKSIPQCIKCNSPVTDSVEVQIEQHEKIKLGHYIDNVWICDDC
                     IDNHKKQQDSILPTEEKTTNNEHHEIIEVANPSNVSPNTSKADEADIL"
     gene            complement(805..1353)
                     /locus_tag="VHF08_00620"
     CDS             complement(805..1353)
                     /locus_tag="VHF08_00620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067185.1"
                     /translation="MVGLLQAIINKHISTVQKCRKLLSKDGITTQELVIDRLDGLFED
                     VSVNIKLQRTILANIGHTATIAKNLDQYQFIICSEIPSMHDSNPLKLQLQKYRIAIIA
                     SFVKLIPLLRALNSDKDLQRWNSFANILLTEVSETLVKARSHKKEVRKSNNNIRLKET
                     LDFFGLTEKEIDHQLEAMYYAS"
BASE COUNT          715 a          263 c          261 g          654 t
ORIGIN      
        1 taatcatctt aaaataaaat attttatagg aacattatct aatagatatt atgtcaaaat
       61 caataccaca atgtatcaaa tgtaattcgc ctgttactga ctcggtagaa gtgcaaatag
      121 aacaacatga aaagataaaa ttgggtcatt atatcgataa tgtttggata tgtgatgatt
      181 gtatcgataa tcataaaaag caacaagatt ctattttacc gacggaagaa aaaacaacta
      241 ataatgaaca ccatgaaata atagaagtgg caaacccatc taatgtatct cctaatactt
      301 caaaggcaga tgaggctgac atattataat tagcaaattg gtggagcaaa atatcaaatt
      361 atctagagat ttctagtata aatattctaa caccagatat tccaattcat tgacctttca
      421 gatatgggat aattaccaat tgaccaaaat atcatcatta ataagagata atattagaag
      481 aatttaaata aataggaaaa tattaacagg atattaaata ccattaataa aaacaacaat
      541 acactaatgc tagagaaata catcgctaaa tcatattatt tgagatacgt attgtgtata
      601 tttctctaca gtatagattg ttgaacttat ataatttgga aagtttgcta tatcagatcg
      661 tggtattagt aaatgaaatt actattttgt agatataaac tataaagaga tttgataata
      721 ttttgataat tcaatcttat gagtttttag tcaaagtaaa tattaatatc aaacaaacaa
      781 aatataatat atgaggatat tcacttatga ggcgtaatac attgcttcta actgatgatc
      841 aatctctttt tctgtaagac caaaaaagtc taatgtctct tttagtctga tattattatt
      901 tgattttctg acttcttttt tatggctcct agccttgaca agggtttcag agacttctgt
      961 cagcaaaata ttagcaaaag aattccacct ctgtagatcc ttatccgaat ttagtgccct
     1021 caataaagga atcaatttta caaatgaggc aattatcgct attctatact tttgcaattg
     1081 caatttgaga ggattgctgt catgcataga cggaatttca gagcatatga taaactgata
     1141 ttgatccaga ttctttgcaa tagttgcagt atgaccaata tttgctaata tagtacgttg
     1201 taacttgata tttacagata catcttcaaa caatccgtct agtctatcga taactaattc
     1261 ctgcgttgtt atcccatctt tagataatag ttttcggcat ttttggactg tagagatatg
     1321 tttattgatt attgcttgaa gtaatcctac catttatgtt atacaccata caaacactgt
     1381 acataccttt aaaagtataa agtctattac taaatctctt tctagcaaag aaatcaataa
     1441 ctagttttac aatattgtaa gcagtaggaa tagatatatt tacataggta acaaagatat
     1501 aattgattaa tggaatacat ctaatctctc tgatcttctg caaagtaatt tatagtttat
     1561 tcttgcttct agagaacttt tgttaaatat atgaatctct tagtttctat attcattatt
     1621 ctcatgcaga ttatattaat tgtaagaaaa gaatcctcat atttgtattt gatcccatta
     1681 ttattctcat tcatgcagag actaaaaatt taggaaaaaa agattgggaa tataaaaaga
     1741 acaatgcttt taaaaagtat ttttaatttt gaaagacctt tatgctatct aaatgatatt
     1801 gttcagattt attacttaaa gcagccaaaa gaaaaaagaa cgcataaagt gaaacctcat
     1861 attaacgaaa tattatgctt ttaaaagcaa aat
//
LOCUS       DATAAS010000047         3082 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_36494, whole genome shotgun sequence.
ACCESSION   DATAAS010000047 DATAAS010000000
VERSION     DATAAS010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3082)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3082)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3082
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_36494"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            620..742
                     /locus_tag="VHF08_00625"
     CDS             620..742
                     /locus_tag="VHF08_00625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067186.1"
                     /translation="MSDTGFACPKCDLIFTTAEDVARHLKNEHVDGSQTERVRL"
     gene            complement(1876..2424)
                     /locus_tag="VHF08_00630"
     CDS             complement(1876..2424)
                     /locus_tag="VHF08_00630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067187.1"
                     /translation="MKKLILSAIVMAGLLFSLTTSNLTFAQPYPRTERLGDYSFGTIA
                     SVQDDESGNPQWIVSGNWKGNILTNETTANASDISFSANVRMIMVNGSAPHSHSIANF
                     NVTDISEENGIKTFNGTSAINLPDRIVEDVPTSVRVLGEGVISIWIDPTRIEEHYGNT
                     PIYGVVAEERGFGPAGPGPRGG"
     gene            complement(2499..>3082)
                     /locus_tag="VHF08_00635"
     CDS             complement(2499..>3082)
                     /locus_tag="VHF08_00635"
                     /inference="COORDINATES: protein motif:HMM:NF020039.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="SMP-30/gluconolactonase/LRE family protein"
                     /protein_id="HEX2067188.1"
                     /translation="FAVQKFTSNGTFLDTWGAVGLGAGQFINPGGIAVDSDGFVYVSD
                     FGENNHVVKFDSNGNLMNEWGSPGTGNGQFITPTDIAVDSQNNVYVGDMGNNRIQVFD
                     SNGNFLKSFGSSGTGEGQLSGVGGIAIDPENNVYVSEPNNNRISVFDINGNFITTFGE
                     GQLNFPVGLAIDSEGKIFVVDQNNHRIQVFARS"
BASE COUNT         1117 a          556 c          420 g          989 t
ORIGIN      
        1 atattggagc tttcctaatt aatattcaaa ggaagcaaag caaaagttgc agaagcaaaa
       61 aaaactaaat ctttgaagaa ttatgaaagg gtgaaaatca atatcaacac ctaacaaaaa
      121 aaccaacatt gccattacag ctacacggtt tctagataaa tagggtatac taacaaatac
      181 aaatgaagta atcttctaaa aatgtaatac aaatatgaca ttaatataca atatataata
      241 atttgcccta tcatatgagt attaccaaca tatagtaacg tattcagcta aaagtaaatt
      301 ggttattcaa agcagagccc gataataatc ttataatgat tcagcagatc ataaaaacaa
      361 tagtaacgag aatcaactgc agacttgtat taaatgtata agaaaagtgt acaatttgct
      421 aatattattg tttgataacg attgtcagac gcatcagctt tcctttgaat atgttcttga
      481 gtattgcagt atgtcaatca tatgagacta gtcgtaagaa tataatttta ttaaataagg
      541 gctttttact cggaaacttg caaaaagtat gctaacccgt atattctatg aagtgatata
      601 attaagaagg aatacaatca tgtcagatac tggatttgct tgtccgaaat gcgatctaat
      661 tttcacgact gcagaagatg ttgcaagaca cctaaagaat gaacatgtcg atggaagtca
      721 aactgaacga gttcgtttat gaatagccct tttgatgctt ctacctattt ctaactttag
      781 taattgcttt attgaatagt atattaaatg tgatggcata cgtacttcta tactctaatt
      841 ctctttttaa ataccagtca atccatcgac ttcttatata acatgattct catacacaca
      901 gcagccaaat ctctacatgc caatcaatga tatgagatat atacaaaata atttaccttc
      961 catcaggaac caagcctaca tgcaattgct attttttaat ctaatcaaca aattatggat
     1021 caaggctggt taagacttca cctatgttat ttgataaaaa ctgatatgtg tgtctctatt
     1081 cccagatatc ccaagagtaa tttttttctt cctaatacca tccacacttt agtttaaact
     1141 tgatatataa ataaagaata tacttaaaaa tcagatagat tctatttttt gttagctttc
     1201 taattcttat aagtctatac tttatgaatg acaatactat tatcttcatt aaccattatt
     1261 ttgtagtaac ctattaacca atcggcaaac aatgcatctt ctaataaact ctatgttatg
     1321 atcattaata ttatcataaa tgtaaatatg tacactttga tactgcgact cagatataat
     1381 tttcatcaga gcttttatga cagtattaaa actatcattt acaaaacatc gatctattta
     1441 actgtcaaat agctgaacca ctttaacttt aacaaattga atctatacta cattcctagt
     1501 atttctgatg ataatgaatt tctttgaatt accaaactaa aaagataaat taagaaaaaa
     1561 gtggcatcaa acacaccata catacatcac aatcatcaca actaatttta cgcttaatag
     1621 aataataata tcaatatggt ttatctctaa atagaatttt tgggccggcg ataggacggt
     1681 aacaaaaata aactgaaggt gtaagataaa aaaataattt atggcatcct tgtaagttat
     1741 tttaaattag atgacacaca tttttatatg agagaatatt tttctaattg atctatgtaa
     1801 tattgcaaaa ataaaaaata aaaaaagaaa atagcaacag tattgcaatt aaaaagatct
     1861 taatagatag ttaatttatc ccccacgtgg acctgggcca gctgggccaa atcctctttc
     1921 ctcagccacc acgccatata ttggagtatt tccataatgt tcttctattc ttgtaggatc
     1981 aatccagata cttattacac cttctcctaa tacgcggaca gacgtaggta cgtcttctac
     2041 tatacgatca ggaagattta tagcagaagt tccattaaat gtcttgattc cattctcttc
     2101 agaaatgtct gtaacattga aattagcaat tgaatgactg tgaggtgcgg aaccattaac
     2161 cattatcatc ctaacgtttg cactaaaact aatatcggaa gcattagcgg tagtctcatt
     2221 tgtgagaata tttcctttcc agtttccaga cacaatccat tgaggatttc ctgattcgtc
     2281 atcttgaaca cttgcaattg taccaaaaga ataatctccc agcctctctg tacgtggata
     2341 tggctgagca aaagttaaat tagaagttgt caatgaaaat aataggcccg ccataacaat
     2401 agcagataaa attaatttct tcattacagt aaaatatcaa caacgcatat tagaatctac
     2461 ctataaaaaa ataaaaaagc tatatgagaa tgaaggattt agcttcttgc aaagacctgt
     2521 attctatggt tattttgatc tactacaaat atcttacctt ctgaatctat tgcaagtcct
     2581 actggaaagt tcaattgtcc ctctccaaag gtggttatga aattaccatt aatgtcaaac
     2641 accgaaattc tattattgtt tggttccgat acatatacat tattttcagg atcaattgca
     2701 attcctccaa caccgcttaa ctgaccttct ccagtaccag acgatccaaa gcttttcaaa
     2761 aagttaccat tgctatcaaa gacctgtatt ctattatttc ccatatctcc tacatagaca
     2821 ttgttttgcg aatctactgc aatgtcagtt ggtgtaataa attgaccgtt accagtacct
     2881 ggagatcccc attcattcat taaattacca ttactgtcaa actttacaac atgattattt
     2941 tctccaaaat cagaaacata aacaaaaccg tcagaatcaa cagcaatacc tccaggattt
     3001 atgaattgac cagcacctaa tcctaccgcg ccccatgtat caagaaatgt accatttgaa
     3061 gtgaactttt gtacagcaaa ag
//
LOCUS       DATAAS010000048         4662 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4357222, whole genome shotgun sequence.
ACCESSION   DATAAS010000048 DATAAS010000000
VERSION     DATAAS010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4662
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4357222"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(174..515)
                     /locus_tag="VHF08_00640"
     CDS             complement(174..515)
                     /locus_tag="VHF08_00640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067189.1"
                     /translation="MVTNYCFIVPILPGGVELIRRWNKENIVNNKEHDEVFRAAGISR
                     ELVWIQHLPQGDFAIASYETDDPEQSIRAIATSNEPWAAKFREHLKQAHGLDITQSPM
                     QFNELVVNWKS"
     gene            complement(967..1209)
                     /locus_tag="VHF08_00645"
     CDS             complement(967..1209)
                     /locus_tag="VHF08_00645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067190.1"
                     /translation="MSKDTLQPCPKCGKGRMRPTGRAGAKREEEDPFREIIYARNYIC
                     DNCSHHMSDAKNTEYAVEVSNNVPASVDKANNIDER"
     gene            1330..2118
                     /locus_tag="VHF08_00650"
     CDS             1330..2118
                     /locus_tag="VHF08_00650"
                     /inference="COORDINATES: protein motif:HMM:NF024110.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2067191.1"
                     /translation="MSSTFLSSSSLFSKRPTKLAGIRQIFLIAYVTGILWLRRNPVSM
                     VFSAMSPFSMLFVLFVVSNGEYIEFAVAGSLVMALVGYGLSLGQDISYYKTEYKIQDI
                     FVASPVSPLVYMTGLALSQLLFGLPALTVLTFLAAYFGTSIIYVPFLISTILLIWGSM
                     SAIGFFLSSHMLHMRNATQVISFVNVFLAVLPPVFYSIERLPLELQYVAYLVPTTHAS
                     LMLQYTMGFPTPEEWSIALGFGVQFAYLIGFIVLAKTKALWREA"
     gene            2933..3250
                     /locus_tag="VHF08_00655"
     CDS             2933..3250
                     /locus_tag="VHF08_00655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067192.1"
                     /translation="MQYHKAAFLGQERSRKAQLKLFDYTGFAMLTYTIKQDKKGFEPV
                     GEEMLVGKITRSGEAMLFICDKDGYAKAQSKPITIQECEEIYQKMIKDGFSEYIGSIK
                     TVS"
     gene            complement(3234..3950)
                     /gene="pyrH"
                     /locus_tag="VHF08_00660"
     CDS             complement(3234..3950)
                     /gene="pyrH"
                     /locus_tag="VHF08_00660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEX2067193.1"
                     /translation="MNNNNRLLRKKVVIKLSGSIFSEGRNKDTIKRYAEMLTDINIDV
                     QPIVIAGGGKIARHYINLARDLGSDEASLDIMGIEVSRLNAKLLITALGEQAYSQVPK
                     NLDEVTIAAESGKIVIVGGLHPGQSTNATSALIAEKVRAFRFLNATDVDGIYDLDPNT
                     NRNAKLLNEITVNECMEILKDGSSMAGTYDLMDIVALKVIERSKIPTRVLRSDTTNIK
                     NAIIGTYHIGTEIVMVKKQS"
     gene            complement(3937..>4662)
                     /locus_tag="VHF08_00665"
     CDS             complement(3937..>4662)
                     /locus_tag="VHF08_00665"
                     /inference="COORDINATES: protein motif:HMM:NF039904.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067194.1"
                     /translation="VEYGKIDYHRLISSFEIVSNGHLAINRSALYSFESMLISRYEMF
                     KAVYFHKTVRSAEVMLLHSMTLADEEMGLTDTSLKNYLDLTDEATLERICSLKNGNEI
                     AVKLAIDYKSRKLLKCVYEKFLHKRDKLYRKMDRQALHDLGAQIADASQVNESSVFVD
                     ASRAPSMPLTPTKKEIRSVLLVDKERAYETPISEIPLIDSITGFLDMLRVYTTHENRD
                     VVEHSTRKVLGEEFLSERSYEQQ"
BASE COUNT         1457 a          803 c          763 g         1639 t
ORIGIN      
        1 aaataattaa aattttctaa ataggttgta gatgatgcaa agggatatgg tcggtggaga
       61 catgtatatt agtatcctgt gtcactaagc aaatatggga tattattttc aagaagacac
      121 ttcaagtctg acgatggctt aagttataaa aggattttga taaattctca gatttagctc
      181 ttccaattga ctactaattc attaaattgc ataggtgatt gagtaatatc taatccatgc
      241 gcttgcttca aatgttcacg gaactttgca gcccatggtt cattggatgt tgctattgct
      301 ctgattgatt gttcaggatc gtcagtctca taactggcaa ttgcaaaatc tccttgcggc
      361 aaatgttgaa tccacaccag ctcacgtgat attcctgctg ctctaaagac ttcatcatgt
      421 tctttattgt taacaatatt ttctttgttc catcttctga ttaattctac tcctcctgga
      481 agtataggaa ctatgaaaca gtaattggtt accatatgtt gttgttgact ttagtctata
      541 tttaaataaa ttatctatct ctatttctta atttgatgac ttcttaaatt cgttaggaga
      601 atatcaaaga aatcttgttc ctgtctctaa agtcttatac gtcaattata aagatcatta
      661 ccaccttaat acattatggt gatttgtttg ggttgatagt aataatgatg atttctatca
      721 tatcattttc tgaccaacta aattgtttgt gggaggtatg ttaggaactt gacgttgatg
      781 ggaagtaata gcagtaataa tagacggtag aataacttga ctatgaattt gttgttgttg
      841 ttgttgaggt agacagactc acacaagctt cagttaacaa attatctttt agttattaat
      901 tagttatcta atggatttga aataaaaggt tgtgttaact taaaagccca ttactaaacc
      961 gttaactcat cgctcgtcta tattattggc cttgtccaca gaagcaggaa cattattgct
     1021 aacctctacc gcatattcag tgttcttagc atcagacatg tgatgactac aattatcaca
     1081 tatatagttt ctagcataga ttatttctct aaatgggtct tcttcctctc ttttagctcc
     1141 tgccctacca gtaggtcgca tccgtccttt tccacatttt ggacatggct gaagggtatc
     1201 ttttgacata attttactat tgtattatac ttatatatta tacttataaa ataagtatct
     1261 tcttacattt atgagttatc ttataaaatg tatgctttat aatatataat ccatataaac
     1321 agaattgcta tgtcatcaac cttcttgtca tcatcatcac tattttcaaa acgaccaaca
     1381 aaactagccg gcatcagaca aatatttctg atagcctatg ttactggaat tttatggctt
     1441 cgcagaaatc ctgtttctat ggttttttct gcaatgagtc ctttttcaat gctgtttgtt
     1501 ttgtttgtag taagcaatgg cgaatatata gaatttgcag ttgcaggaag tcttgtgatg
     1561 gcattagttg gttacgggct ttcattagga caagatattt catactacaa gactgaatat
     1621 aagatacagg atatttttgt agcttcgcca gtttctcctc ttgtttacat gacgggcttg
     1681 gcattgtcgc agcttttgtt tggattaccg gcattgactg ttcttacttt tcttgcagca
     1741 tactttggaa cttcaattat atatgttcct ttcttgatat caactatact attaatctgg
     1801 ggatccatgt cagcaattgg atttttcttg tcatcacata tgctacatat gcgaaatgca
     1861 acacaagtaa tttcatttgt taatgtattc cttgcagtat tacctcctgt cttttactca
     1921 atagaacgtt taccgctaga attacaatat gtcgcttatc tagtaccgac cacccatgca
     1981 tcgttaatgt tgcaatatac tatgggattt cctacaccag aagaatggtc cattgctctt
     2041 ggttttggag tacagtttgc atatctaata ggatttatag tactggcaaa gacaaaagct
     2101 ctctggcgag aggcataata taataataat ctacttaaaa atatactaga tagagtttat
     2161 tgatatatgc caaagatcag taaagatgtt gtaacaagta ttgctagttc agagtagtca
     2221 cttacaaaat cagttaaaga atgtatgtga tttaaaaatc atcttttctt aatataaata
     2281 tttgagtcta gaaagatgtt attttttaat atcatcttta tcgttggtgc tattcttgtt
     2341 tcctttagta actactgtta ccgttgccta ttccaatgtt caattgatga cagatacaga
     2401 taatctaatt tcaactgcaa cagatactat aattgtagat cggaagatga taatttagaa
     2461 agtaaaaaga tgtttttttc gatgacgatg acaaaacaca catttacgaa gaaacttact
     2521 aaacatgatt tgaaaatatt gattactaga taaaatagaa ttgggaagat atagaagcat
     2581 gcggttagca agaattatca gattctgaca tgtagacacc taataaaaaa taattcgtct
     2641 ttaatctact aaacatatct acaaggaggc ttagctttca atcttgctaa aaatcaatgc
     2701 ttaaacgcat agaaagaaga tataaagtca attagatatt gaataataat agttggaata
     2761 gcataactaa ttgtagatat tgttcaaatt tgtaagaagt atttctgaaa gaaagtcatc
     2821 taattttaca gacaatggaa tttttactag atccagaagg ctctactcaa gtggaatttc
     2881 agaatacaaa aagtaaggct cttatacata attgtaaaat aaaataccat aaatgcaata
     2941 tcataaagcc gcttttcttg gacaggaaag atcaagaaaa gctcaactga agctatttga
     3001 ctatactgga tttgcaatgc taacttatac tataaagcag gataaaaaag gattcgagcc
     3061 tgttggtgag gaaatgctag ttggtaaaat tactaggtct ggcgaagcaa tgttatttat
     3121 ctgtgataaa gatggatatg caaaggcaca atcaaaacct ataaccatac aagaatgtga
     3181 agaaatttat caaaagatga taaaagatgg attttcagaa tatataggct ccatcaagac
     3241 tgtttcttga ccattacaat ctcagtacca atatgatatg tgccaataat cgcgttcttg
     3301 atattagttg tatctgatcg taatactctc gtaggtattt ttgaacgttc tataactttc
     3361 aatgccacaa tatccataag atcatatgtt cctgccattg agcttccatc cttaagaatt
     3421 tccatacatt catttactgt aatttcattt aataattttg cattcctgtt ggtatttgga
     3481 tctaagtcat agataccatc gacatcagta gcatttagaa atctaaatgc ccttactttt
     3541 tccgctatta atgcagaggt agcattggta ctttgacctg gatgtaaacc acctacaatc
     3601 actattttac cactttctgc tgctattgtc acttcgtcga gatttttcgg aacttgggaa
     3661 tacgcctgct ctccaagagc tgttatcaac aattttgcat tcaaccttga cacttctatt
     3721 cccataatat ctaaactcgc ttcatcagag ccaagatcgc gtgcaagatt gatataatga
     3781 cgtgcgatct tacctccgcc ggcaataact attggctgta catcaatgtt gatgtctgtg
     3841 agcatttcag catatctttt aatagtatct ttgtttcttc cttcgctaaa tatgctacca
     3901 cttaatttaa taactacctt ttttctgagt aatctattat tgttgttcat agctcctctc
     3961 cgataaaaat tcttcaccaa gcacctttct agtagagtgt tctactacat ctctgttttc
     4021 atgagtagtg tatactctta gcatatcaag aaaaccagtt atagaatcga taagtggaat
     4081 ttcagagata ggagtttcgt aagcccgttc tttatcaaca agtaatactg atcttatctc
     4141 tttctttgta ggagttagcg gcattgatgg cgctctagaa gcatcaacaa aaacagaact
     4201 ttcgtttacc tgtgaagcat ccgctatctg tgctcccaga tcgtgtagtg cttgcctatc
     4261 catttttcta tacaatttat cacgtttatg taagaatttt tcataaacac attttaataa
     4321 tttcctagat ttgtagtcta ttgctaattt gactgctatt tcgttgccat tcttaagcga
     4381 acaaatgcgc tcaagggttg cttcatctgt cagatcaagg taatttttca aagatgtatc
     4441 agttaaaccc atctcttcgt cagctaatgt catagaatgt aataacatga cttctgcaga
     4501 tctaactgtc ttatgaaaat agactgcctt gaacatttca tatctagaaa taagcataga
     4561 ttcgaatgaa tatagcgcgg atctgttaat agctaaatgt ccattagaga ctatctcaaa
     4621 ggaacttatc agccgatgat aatcaatttt accgtactct ac
//
LOCUS       DATAAS010000049         8162 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_578320, whole genome shotgun sequence.
ACCESSION   DATAAS010000049 DATAAS010000000
VERSION     DATAAS010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8162
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_578320"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(871..1695)
                     /locus_tag="VHF08_00670"
     CDS             complement(871..1695)
                     /locus_tag="VHF08_00670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MqnA/MqnD/SBP family protein"
                     /protein_id="HEX2067195.1"
                     /translation="MEITLGHTPDADDAFMFFGIACGKVSSVDIKIKHVIEDIETLNK
                     HALRHDLDVTAISAHAYAYLKDYVILRSGGSFGLNYGPIVISKRKLTLSELRKGIIGI
                     PGKMTSANLLLNLALGEFNGKEMPFQLIPEAVLNDKVDAGLVIHEAQITYDTSRLHTV
                     FDLATWWTAKTKGLPMPLGINVASNKSMTLEQIKMFDKLFKESILYGLEHIESAVDYA
                     MQYGRGQPRDVITRFIKMYVNDVTIDMGTIGEKSIKKMFAIAEEKGFLSFSKLNFA"
     gene            1920..2282
                     /locus_tag="VHF08_00675"
     CDS             1920..2282
                     /locus_tag="VHF08_00675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067196.1"
                     /translation="MFSLGEDSEGPYLTTSILDSNGNTLIIIEKNNCIFYNKEFIKKN
                     QRDHVLLEDRKGQIMLESRVLDKQMILVSGIFSFKDFVLTATQNYLILPNGQRMMHNR
                     TMANKSSVTITEFGIKSE"
     gene            2437..4638
                     /locus_tag="VHF08_00680"
     CDS             2437..4638
                     /locus_tag="VHF08_00680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003746 - translation elongation factor
                     activity [Evidence IEA];
                     GO_process: GO:0006414 - translational elongation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor EF-2"
                     /protein_id="HEX2067197.1"
                     /translation="MPKFKSTQDILRIIGNKEQIRNFGVIAHVDHGKTTMSDSLLAAS
                     GIISPSVAGQALALDSMKLEQNRQMTIRGANVTLFYENEGKEYVINMIDTPGHIDFTG
                     RVTRALRAIDGVVVVSDSVEGIMTQTETVTRQALEERVRPVLYINKIDRLVKELRLDP
                     PAMQKWLSNIIAEFNRLVDIYAEPELKEKWKVSIQGNSVAFGSAKDRWGFNFKVAQKK
                     GVSFKDVYDAYTSDGPDMIKSLAERAPLHEAVLGMVVQHHPPPHIAQRYRIPKIWPGD
                     LESALGKSLLACDEKGPAVMMVTTINVDPQAGRVATGRLFSGTVKDGDEIYLIDAKRP
                     GKVQSVNIYMGNTREVVSMLPAGNIPALLGLDYAVAGETISTVKSIPAFESIKYVSEP
                     VVTIAVEPKHPKDLPKLVEALRRITVEDPNLIVKINEETGETLMAGMGVLHLEIATSL
                     LQEAGLNITTTQPLINYRETVRTKAGPIMSKSPNKHNKIFMRIESLDNGIIELIKTGQ
                     IKEDMDKREMAKILREKGWNADEARNVAAIDVGGNMLIDETKGVQFIQESMDSIKSGF
                     DDVIHSGPIAHESVRGVKFVLHHFVPHEDPAHRGLAQLMPATRRAMLGSMLIADPVLL
                     EPILGMEVKCPQEQIGTVAGILSGKRGKLLNVEQKGVISIIQGEIPASETFDLSEIMR
                     GGTAGKAMWSTYFKTWQPVPQSIFRNLVGEIRKRKGLNPEPPKPDEFIDKE"
     gene            complement(4770..4931)
                     /locus_tag="VHF08_00685"
     CDS             complement(4770..4931)
                     /locus_tag="VHF08_00685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067198.1"
                     /translation="MQKRIYQKKKQTVEKFIKRFGKVEHSFILNEVNVDYDTLMKILE
                     ELRKEGRIK"
     gene            5028..6260
                     /gene="mpgS"
                     /locus_tag="VHF08_00690"
     CDS             5028..6260
                     /gene="mpgS"
                     /locus_tag="VHF08_00690"
                     /EC_number="2.4.1.217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050504 - mannosyl-3-phosphoglycerate
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate synthase"
                     /protein_id="HEX2067199.1"
                     /translation="MLFLFLIVINNLDLLACMRVDLPRYTERFGSISLHGVQRVYELD
                     SGSSNGRPTSEAIRRIGNEEMSEIERKMAIVIPVKGERLKLLEGVLSGIPHDCLTIIV
                     SNSPRQPVDRYKLEKEALEQFNQFAEKNALIVHQKDPGLSEALREVGYTSIFGPDDMV
                     RNGKAEGMIIGMLLTKMAGKEYVGFIDADNYVPGAVNEYVKIYASGIAMSNTPYTMVR
                     VSWIYKPKISETGVYFSKWGRVSEITNQYLNSLISYYTGFETEVMRTGNSGEHCMSMK
                     LAELLTYSSSFSVETYEMVNLLEEFGGIVPTENQEAMDKGIEVMQVETRNPHFHEEKG
                     DIHLKEMIDGSLGCIYHSKICHPKLREKIVEELRGKGVIEENQEPSVLQKINPFKDID
                     MLQFGKILHNKATSFVHS"
     gene            complement(6280..7146)
                     /locus_tag="VHF08_00695"
     CDS             complement(6280..7146)
                     /locus_tag="VHF08_00695"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HEX2067200.1"
                     /translation="MFFLKIIYLGLRILLRLALGKKRRDRFYIKRGLDFGVFWYKTFK
                     FLKPGKSTLLKFKVPKYDYEFYCRINKDDFKIMTIHEDDIITRFTPKQGDIVIDIGAH
                     IGLYTIIGSKRVGAQGKVVAIEADPGNFEMLNRNIKLNQLTNVIPLNYAVYSKETKIK
                     LYLPSGESGFTKYNTIMPNWINTQEKFVEVNANTLDYLLQLNKIRQEEVNWIKIDVEG
                     AEFEVLKGATNVLSKSKDVAILMELHGPPHIYRPKVEELVNLYNFKIEFEKSYEENGS
                     MHIIMQKSASTI"
     gene            7483..>8162
                     /locus_tag="VHF08_00700"
     CDS             7483..>8162
                     /locus_tag="VHF08_00700"
                     /inference="COORDINATES: protein motif:HMM:NF024912.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067201.1"
                     /translation="MCGIAGILSKRNEDVVPLVGTMLSCMTNRGPDGAGIAVADSIIQ
                     SDSLASLEYHELSGSNALGHVRLAIVGGTHGQQPFHSCNGKFTLEHNGEIYNYKKIRR
                     RLMKHHQFVTQTDSEVIVHLLEDHFNKNNDLLYAIRKTVAELDGVYALVIKDEETENI
                     ALVRDRMGVRQIYYGENNHFIAFASERKALWKVGIKEPTNRVLPGHAIIIKSDGLIEN
                     FKVARSPV"
BASE COUNT         2756 a         1330 c         1444 g         2632 t
ORIGIN      
        1 tgcaacttcg ccagagaatg cacgcattgg aaattctttt ccatcgaaag tttttagaat
       61 aacaacacct tctagtccta gctgatctgc aaatccaaca taacttattc ttgcctgtat
      121 atactctcca tcttcttctg acgaaaaacc attaggcata acaattaatt attgcattgc
      181 taagaattaa ggtttacagt tgatctattc tattaacctc ttttaacaag tcagctttat
      241 ccattgttgt gatagtttaa attatttttt cctttgttgc tggctataga ctcaaggatt
      301 acctgcttac gtattgcttt aacctttttc tttatatgaa tgaagatttg aatgattttc
      361 tctttattat tcgatagcag tatctcccta tgctataaaa aatatatata tatatataaa
      421 aagagtaata cattttcctt tagaaattat taaccaaacc aatagtggct ttcgaatttt
      481 aacatataac gacttattct atcttatcat tagaggtttc atatattcac tttatcatta
      541 attctctttt accttcatat ttttgagtat ttttgctttg atgcagatat aatatatatc
      601 cgtatttctc tcttattata agaatctaat catatgatga gttagcagtg cttccagcat
      661 aaagatggat tagaattagt caacattcac attgtcactc gataagtgat agaattcact
      721 ttcgctatcc aattgtaata aaattcatat gcctttatct tttacttatc gaaccatacg
      781 tcgaaggaaa gttaaaggaa atggcacaaa atctataaat cataatgaaa tcataatgaa
      841 ttcttacttc attatattat tatggttgag ttaagcaaaa ttcagtttag aaaacgataa
      901 gaatcccttc tcttcagcta ttgcaaacat tttttttatt gacttttccc cgatcgttcc
      961 catatctata gttacatcat ttacatacat tttgataaac ctggttatca catcgcgtgg
     1021 ttgtcctctt ccatattgca tcgcataatc tactgcggat tcaatgtgtt caaggccata
     1081 aagaatcgat tccttaaata gcttatcaaa catctttatc tgttctaatg tcattgattt
     1141 attacttgct acgtttatac ccaatggcat tggcaatccc ttcgtttttg cagtccacca
     1201 agtcgccaaa tcaaaaacgg tatgaagtct tgaagtatca tatgttatct gtgcttcatg
     1261 aatcaccaaa cctgcatcta ctttatcatt tagaacggct tcaggaatca attgaaaggg
     1321 catctccttt ccattaaatt ctcctaaggc aagatttagc aataaattag cagatgtcat
     1381 cttacctgga ataccaatta tgccctttct taattcagat aatgttaatt ttcttttaga
     1441 aatgactata ggaccataat ttaagccaaa acttccgcca ctacgtaata ttacataatc
     1501 cttcaaataa gcataggcat gcgcggaaat agctgtaaca tcaagatcat gtcttaaagc
     1561 atgtttgttg agggtttcaa tgtcttctat gacatgtttg attttgatat ccacagaaga
     1621 tactttaccg catgcaatgc caaagaacat aaatgcatca tcagcatcag gggtatggcc
     1681 tagagttatt tccatcatat attatctaca gaaatagact aatattttct ttataaaaac
     1741 caagtataat ttatggtaat cctgggcatc aatcgactta acatattacc ttgctacaca
     1801 cataaagaat aattaatgaa acattatata aaataatgat ccatttgcct tatactcttc
     1861 tatttggaaa taattttatc acaaatagcc ctcaatcagt aaagatggcc aatgaagttt
     1921 tgttttcgct gggcgaggat agtgagggac catatttaac aacatcgatt cttgattcaa
     1981 atggaaatac gttaatcatt attgagaaaa ataactgcat attctataat aaagaattta
     2041 ttaaaaaaaa tcaacgcgac catgttttgc tagaggatag gaaaggacaa atcatgcttg
     2101 aatctagggt gctggataag cagatgattt tagtaagtgg catcttctct ttcaaggatt
     2161 ttgtattgac tgcaacacag aattatctta ttttgccaaa tggacaacgg atgatgcata
     2221 ataggactat ggcaaataaa agttcggtaa cgattacaga atttggaata aaatcagaat
     2281 gagcgagcaa ccacgaattc taacagaaat atgctctcag gaataattaa atattaagtg
     2341 tatatgctcg cttgtattat gtaaaacaat aaaattttta attttgaatg taaggaacgt
     2401 ttaatagtcc tccagcaaat ttttgcttga atatatatgc caaagttcaa atcaactcag
     2461 gatattctaa ggattattgg taataaggaa cagattcgta atttcggagt cattgcccat
     2521 gtggatcacg gcaagacaac tatgagtgat agtcttttag ctgcttcagg cattatctct
     2581 ccctctgttg caggccaagc tttggctctt gattctatga aacttgaaca gaatagacaa
     2641 atgactattc gtggagctaa cgttacacta ttttatgaaa atgaaggcaa ggaatacgta
     2701 attaatatga ttgatacacc tggtcacatt gactttacag gaagagtcac tcgtgcccta
     2761 agagcaattg atggtgttgt agtagtttct gattctgttg aaggcattat gactcagaca
     2821 gaaacagtaa caagacaagc gcttgaagaa cgagttagac cagttcttta tattaacaaa
     2881 attgacagac tagtaaagga attaagatta gatccaccag ctatgcaaaa atggctttca
     2941 aacattatcg cagaatttaa cagactagtt gatatttatg ccgaaccaga gcttaaggaa
     3001 aaatggaaag taagtataca gggaaacagt gttgcatttg ggtctgcaaa agacagatgg
     3061 ggttttaatt ttaaagtagc ccagaaaaaa ggtgtaagtt tcaaggatgt ttatgacgct
     3121 tatacttcag acggtcctga tatgataaaa tctttagcag aaagagcgcc attgcatgaa
     3181 gctgttctag gaatggtagt gcaacatcat cctccacctc atatcgccca acgatataga
     3241 attcctaaga tctggccagg tgatttagaa tctgctcttg gaaaatcact tttggcatgt
     3301 gacgaaaaag gtccagcagt aatgatggtt acaacaatta atgttgatcc acaggcaggt
     3361 agagttgcaa ctggtagact cttctcaggt actgtcaaag acggtgatga gatctaccta
     3421 attgatgcaa aaaggccagg aaaagttcag tcagtaaaca tttacatggg taataccagg
     3481 gaagtagtaa gcatgttacc tgcaggtaat attcctgcat tgcttggact tgattatgct
     3541 gttgcagggg aaacaatttc gactgtgaaa agcattccag catttgaatc aatcaagtat
     3601 gtttcagagc cggtagttac gattgcagta gaaccaaagc atccaaaaga tttgccaaag
     3661 cttgttgaag cattacgcag aatcacagtg gaagatccaa acctcatcgt taagattaat
     3721 gaggaaacag gtgagacgct gatggcagga atgggtgttt tgcatctaga aattgcaaca
     3781 tcactcttgc aggaagcagg tcttaatata actactactc aaccattgat caactatcgt
     3841 gaaactgttc gtacaaaagc aggaccaatc atgagcaaat ctccaaataa acataacaaa
     3901 attttcatgc gcatcgaatc acttgacaat gggataatag agcttataaa aactggtcaa
     3961 atcaaagaag atatggataa gagggaaatg gcgaagattc ttcgagaaaa aggctggaat
     4021 gctgatgaag caagaaatgt tgccgcaatt gatgtaggtg gtaatatgct aattgatgaa
     4081 acaaaaggtg ttcagtttat acaggagtcg atggactcta ttaaatctgg ctttgatgat
     4141 gtaattcatt ctggccctat tgctcatgaa tccgtaagag gtgtcaagtt tgtattacat
     4201 cattttgttc cacatgagga cccagctcat agaggtctag cacaattaat gcctgcaact
     4261 agaagagcta tgttaggttc tatgttaatc gcagatccag ttttacttga acccatactt
     4321 ggaatggagg tcaaatgtcc acaggaacaa attggcacag tagcaggtat cttatcagga
     4381 aaaagaggta agttattgaa tgtagaacaa aaaggtgtaa tttctattat acaaggcgaa
     4441 ataccagcat ctgaaacatt tgatctttcg gagattatgc gtgggggaac tgctggaaaa
     4501 gctatgtgga gcacttactt taagacatgg caacctgttc ctcaatcaat ttttagaaat
     4561 ttggttggag aaataagaaa gagaaagggt ttgaatccag aaccacccaa accagatgaa
     4621 tttatagaca aagaataaga acacatgtag catttaattt tgggataatc aaaattatct
     4681 ctatcaccta tatatttagt ctgtgacagc ttgatataat gatataataa taatattggt
     4741 tggataataa agtatttaat aacacttggc tattttatac gcccttcttt gcgcaattct
     4801 tctagtattt tcattaatgt atcataatct acattaactt catttagaat aaaggaatgt
     4861 tctacttttc cgaatctttt aataaatttc tcgactgttt gctttttctt ttgatatatc
     4921 cttttctgca catacgctca taatcataga ggttattata catgattcgc atctagttat
     4981 ttatggagag ctaacagtgt ttaaaataga ataattaaat tatctatatg ctttttctat
     5041 tcctaatagt tataaacaat ttagatcttt tagcttgtat gagagtagac cttccaagat
     5101 atacagaaag atttggatcg ataagtctac atggggttca acgtgtttat gaattggatt
     5161 caggatctag caacggtagg ccaacttctg aagctattcg acgtatagga aatgaagaga
     5221 tgtctgaaat tgagagaaaa atggctatag tcatacctgt taaaggagag cgtttaaagt
     5281 tacttgaagg agtgttgagt gggattcccc atgattgctt gacaattatt gtatccaata
     5341 gtccaagaca acctgtggac agatataaat tagaaaagga ggcgcttgag caatttaacc
     5401 aatttgcaga aaaaaatgcg ttgattgtac atcagaaaga tcctggacta tcagaggcac
     5461 tgagagaggt tggctatact agtatatttg gcccagacga tatggttaga aatggcaagg
     5521 ccgagggaat gattattgga atgctgttaa caaagatggc aggaaaagaa tatgttggat
     5581 ttatcgatgc tgataactat gtacctggag cagtaaacga atatgtaaag atttatgcgt
     5641 caggaattgc gatgtcgaat acgccatata caatggttcg tgtgtcttgg atttataaac
     5701 caaagatatc agagactggt gtgtattttt cgaaatgggg gagagtatct gagataacta
     5761 atcaatatct taattcgttg atatcttatt atactggctt tgaaaccgaa gttatgcgta
     5821 ctggaaattc aggggaacat tgtatgtcaa tgaaattagc agagcttcta acttattcgt
     5881 cgagcttttc agtagaaacc tatgaaatgg taaacctact tgaagagttt ggaggaattg
     5941 tgccgactga aaatcaggaa gccatggata agggaattga ggtaatgcaa gtagaaacca
     6001 gaaatccaca ttttcatgaa gagaaaggtg atattcactt aaaagagatg attgatggat
     6061 cacttggttg catttaccat agcaaaattt gccatccaaa actaagagag aaaatcgttg
     6121 aagaactgcg tggaaaaggt gtcatagaag aaaatcaaga gccatcagta ttacaaaaaa
     6181 ttaatccctt caaagatata gatatgttac aattcggaaa gattcttcat aataaagcaa
     6241 caagttttgt tcattcctaa tagttaatga ataagttagt catattgttg aagcagattt
     6301 ttgcataatt atatgcattg atccattctc ctcataactt ttttcaaact ctattttgaa
     6361 attgtataaa ttaactaatt cttctacttt tggtctataa atatgtggag gaccatgtaa
     6421 ttccatcaga attgcaacat ctttactttt agataacaca ttagtagctc cttttaatac
     6481 ttcgaattct gctccttcca catcgatctt aatccagttt acttcttctt gccttatttt
     6541 atttaattgc aataaataat ctaacgtgtt agcatttact tctacaaatt tttcttgagt
     6601 atttatccaa tttggcatta tagtattgta tttggtgaag cctgattctc cactaggcaa
     6661 atataatttt atttttgtct ctttagaata tactgcataa ttcaaaggta taacattagt
     6721 tagttgattt agtttaatat tacgatttaa catttcaaaa ttgccaggat ccgcctcaat
     6781 agcaactact tttccttgtg caccaactcg ctttgaacct ataattgtat aaagacctat
     6841 atgtgcgcca atatctataa ctatatctcc ttgcttagga gtaaaacgcg ttattatatc
     6901 atcctcgtga attgtcataa ttttaaaatc atctttgtta attctacaat aaaactcgta
     6961 atcatattta ggtactttga attttaataa agtggatttg cctggcttta aaaacttgaa
     7021 agttttatac caaaaaactc caaagtcaag tcctcgttta atatagaatc tatctcttct
     7081 cttctttccc aaagctagtc taagtaaaat tcttaaacct aaatagataa tttttaaaaa
     7141 aaacaatata catttatcga atatagtgat tccctctgaa ttttttatga accacaaaat
     7201 caaatttagc atttattgca ttgtttgaaa tacaaactta tataatcatt cctcaattcc
     7261 actacacttg attataatta gtagatgtta taagctataa aacactcaaa ctatatatat
     7321 tatcttcctc atgacaaata aactcacaag aaagatgaat taaatgtatt cgtatttatt
     7381 aacactttta agccattata cataattata ttatagttga actcaagtaa tttgcttatc
     7441 tataaggtag gaattcaatt ttagaattca gagggatata atatgtgtgg aatagcaggt
     7501 atactaagca aaagaaatga agatgttgtt ccgctagttg gaacaatgct ttcttgcatg
     7561 acaaatcgtg gacctgacgg ggcaggaata gcagtcgctg actctattat acagtcagat
     7621 tctcttgcaa gtttagaata tcatgagctt tctggtagta atgctttagg tcatgtaagg
     7681 ctcgcgatcg taggcggtac tcatggacag caacctttcc acagctgcaa tggaaagttt
     7741 actctagagc ataacggaga aatttacaac tataagaaaa ttcggcgaag gctaatgaaa
     7801 catcatcaat ttgttactca gacagacagc gaagttattg tccatttgtt agaagatcat
     7861 tttaacaaga acaatgattt attatatgcg attagaaaga ctgttgctga acttgatggt
     7921 gtttatgctt tggttatcaa agatgaagag acagaaaaca tagctttggt tagagataga
     7981 atgggtgtaa gacaaattta ctatggggaa aataatcatt ttattgcatt tgcgtctgaa
     8041 cgtaaagcgt tatggaaagt aggaataaaa gaacctacaa accgagtatt accaggtcat
     8101 gcaataatta tcaaatcgga tggtttaata gaaaatttta aagtagcccg ttctccagta
     8161 ca
//
LOCUS       DATAAS010000050        10217 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_44252, whole genome shotgun sequence.
ACCESSION   DATAAS010000050 DATAAS010000000
VERSION     DATAAS010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 10217)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10217)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10217
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44252"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            157..762
                     /locus_tag="VHF08_00705"
     CDS             157..762
                     /locus_tag="VHF08_00705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067202.1"
                     /translation="MLTNVGHLSSFHMFKTYKNKHLSTHALRQRFILKSLALYEQQPL
                     YTTRGNLSTLLAREFNISKKNAYQYIFKELQKCLIPNQFVEEAGNVLTTKGPRILQRK
                     GIPSYRLTKMGILVTSALEELEIKKRKELLEDYLISAKISNIHEFSVNEQLLFQLRKH
                     PEFALEYIRQGVIKYIEGKINHPFDIIQNSQGNLYFNDNED"
     gene            908..1570
                     /locus_tag="VHF08_00710"
     CDS             908..1570
                     /locus_tag="VHF08_00710"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF013366.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit D"
                     /protein_id="HEX2067203.1"
                     /translation="MTSSPSVDILERADEKIVIKFTNVPRQYVNAIRRTSISEVPTLA
                     IDDVVILENSSVMHDEAIAHRLGLIPLQTKLDRFIMPHDCDCKSTLGCSKCRVLLVLD
                     SEANEKTKVVTSGELVSEDELIKPVSKDIPIITLAPSQKLKFEAYARLGIGRDHAKWQ
                     PTSAAIVKDGNNENESILVIETNRALTAEETLMAAIEKINSKIKNFNHIIQHLEVPKN
                     PY"
     gene            1621..1971
                     /locus_tag="VHF08_00715"
     CDS             1621..1971
                     /locus_tag="VHF08_00715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18e"
                     /protein_id="HEX2067204.1"
                     /translation="MLANSVIDNTIWTLRRAFKKNKAPIWKALENELSGRRSNKREVN
                     VGRLSDITKNDEVVIIPGKVLSSGAIDHKLTVCTFSISQEAAKKILESGGKIITLDQL
                     IEKYPDGNGVRIIG"
     gene            1964..2455
                     /locus_tag="VHF08_00720"
     CDS             1964..2455
                     /locus_tag="VHF08_00720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEX2067205.1"
                     /translation="MANKQELLKRSSSQPAQNKQIVIDAANCISGRICSHVSKLLLQG
                     NRVTIVNAEKAMLSGQRYKTIQLYKEHLEINSVTNPIHGPFHPRRPDTILTKMVRGMI
                     PKRKSSGIEAFKRLRVYIGIPESLKNSEMKYYDDSKITKPSSYYITVGEVAKEIGWSG
                     GVE"
     gene            2460..2903
                     /gene="rpsI"
                     /locus_tag="VHF08_00725"
     CDS             2460..2903
                     /gene="rpsI"
                     /locus_tag="VHF08_00725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEX2067206.1"
                     /translation="MNKIDLYPGQRKTCRAVATISKGRGKVRINNVPVELLQPAVAKE
                     LVITPLLLIGELRNRVDINVSVEGGGFMGQAFASAVAISKALTGEGKGGRDPKDHPLA
                     KSVREEIRKKITEFDRHFLAGDPRQSESKKFGGPGARRRKQKSYR"
     gene            3212..3928
                     /locus_tag="VHF08_00730"
     CDS             3212..3928
                     /locus_tag="VHF08_00730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly factor SBDS"
                     /protein_id="HEX2067207.1"
                     /translation="MQDSLIYRLMTDTRLTVVRLTVDGDKFEILVKPDPALEYKLGKR
                     TDLSSVLISDEIYSDANKGSRAAGEKLTKHFKTADPTEVAKQIISRGELSLTTEQRRK
                     IVEEKKRQIIQYINKSFVDPKTHIPHPILRIESAMDEVRVIIDPFKRAEDQAKTVVDA
                     LRKILPLKSEIMRLTVTVPPEFSGQSYSVFKTIGNFKGEQWLENGSLRVILEINAGMK
                     AAFLDRIGSITKGSAQVVEE"
     gene            4040..4855
                     /gene="rrp4"
                     /locus_tag="VHF08_00735"
     CDS             4040..4855
                     /gene="rrp4"
                     /locus_tag="VHF08_00735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000178 - exosome (RNase complex)
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex RNA-binding protein Rrp4"
                     /protein_id="HEX2067208.1"
                     /translation="MGMQEIKRKFVVPGDKIADGNFKPLMNVIKVNNTIIATRIGIAE
                     AGRDGIKVIPLSGVYIPRVNDIVIGKITDHSSLSWEVDINSCFSGHLPAQDVFGRDFS
                     PARDDMGRQLAIGDLITARIIVFDRTRDPMLTIQDKDLGKIPRGEFLKISATRVPRLI
                     GKRGSMIQTIEQATQTRVLIGQNGIVVVTGRNPEGINLAVRAIRMVEEEAHTSNLTQR
                     VKVLLNVPDTPQQTEGGTSVTQIEKGEKVEEIQSTIQEVEEEIEEELEKGEKL"
     gene            4856..5596
                     /gene="rrp41"
                     /locus_tag="VHF08_00740"
     CDS             4856..5596
                     /gene="rrp41"
                     /locus_tag="VHF08_00740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex exonuclease Rrp41"
                     /protein_id="HEX2067209.1"
                     /translation="MIQTRNLIDENGRRTDGRTADELREIKINVGVVKNADGSAFIEF
                     GKNKIIAAVYGPREVHPKHMALPDRCVLRCRYHMSPFSTDTRKNPAPSRREIEISKVM
                     REALEPALILEDYPRAAIDVFVEVLQADGGSRCAGITAASVALADAGINMRDIVASCA
                     AGKVDEKIVLDINDTEDKEGGADMPVAYMPHLEQITLLQLDGILNHEQFNECVDKAIR
                     GCEIVYEIQRQVLMQKYFGNETELKEEQ"
     gene            5593..6417
                     /gene="rrp42"
                     /locus_tag="VHF08_00745"
     CDS             5593..6417
                     /gene="rrp42"
                     /locus_tag="VHF08_00745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000178 - exosome (RNase complex)
                     [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex protein Rrp42"
                     /protein_id="HEX2067210.1"
                     /translation="MSSSKRSTIIVEHLRKQQMWDAISKGKRLDGRNLDDIRPLEIEL
                     DIIKKANGSAKVKLGNSEVIAGVKIETGEPFEGLENKGALIVSAEVLPTASPYIEPGP
                     PDEETVELARVVDRGIRESEMIDLDKLVLVPGKIVYTIFVDCSIINADGNLFDATSYA
                     VVSALASSKIPVFEMQDGKVVNTGNNQDPPVTTIPVSITAIRIGEAVILDPTSEEEAC
                     MNARITITTNSNGDYTAIQKGSTGAFTVGQIKKAAETARIKGEEVRAKLKELTRAG"
     gene            6458..6649
                     /locus_tag="VHF08_00750"
     CDS             6458..6649
                     /locus_tag="VHF08_00750"
                     /inference="COORDINATES: protein motif:HMM:NF013905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L37"
                     /protein_id="HEX2067211.1"
                     /translation="MKFGATVRKRYGMAYNTLKQKRRCPSCGSLQFNRIASGIWYCPK
                     CRYKVAAGAYDIDTEKLQS"
     gene            complement(6638..6859)
                     /locus_tag="VHF08_00755"
     CDS             complement(6638..6859)
                     /locus_tag="VHF08_00755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067212.1"
                     /translation="MSLKYELIVARRLGISSLSISINTLEISDEIFIFSLEPDEIFVS
                     GLSAEQIHFAIDLRMDIGLFLKEICRLAL"
     gene            6938..7330
                     /locus_tag="VHF08_00760"
     CDS             6938..7330
                     /locus_tag="VHF08_00760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prefoldin subunit beta"
                     /protein_id="HEX2067213.1"
                     /translation="MSEQELPPWLREQVSRLQQLQQNLQAIMMQKQQIELEIVETDRA
                     LEELKKIGIDDAVYKSAGPLLIKANKEGTLKELEEKKELSNTRVTVLAKQEARVKDNL
                     KEVENKINQMIRGAQGSDSGSIAGLKPK"
     gene            7426..8175
                     /locus_tag="VHF08_00765"
     CDS             7426..8175
                     /locus_tag="VHF08_00765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ERCC4 domain-containing protein"
                     /protein_id="HEX2067214.1"
                     /translation="MSVRIVVDERERNSRVPNLLRQAGAIIDFAHLKVGDYIVSPDIA
                     IERKTIHDLISSIYDGRLFVQCSELAQYYSKPIVIIEGNIIELLKVPIEIDDDKLKIL
                     VERIPLAYDAIAKVTLDFRIPIIHTPSAHYTSQLLITMVNKSLQEGQNTGPLLKRIKK
                     GNPLYAQQLSILSSLPGIGDKLAVRMLKKFQTPQRALNASVADLARIPGFGTARAEKV
                     RKILDNPHNERIELTQRTLLDDDLSSLNNTE"
     gene            8345..9445
                     /locus_tag="VHF08_00770"
     CDS             8345..9445
                     /locus_tag="VHF08_00770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--phosphoribosylaminoimidazolecarboxamide
                     ligase family protein"
                     /protein_id="HEX2067215.1"
                     /translation="MITCHEVNRIVNQYKLKDITIGTIGSHSALEIMDGSKDENLKTV
                     CFCQKGREIPYLRFKRLTDEIILLDKFSDIMLRENQEKLRQLNTIMIANRAFTAYLGY
                     DNIENNLNVPIFGNRLLLRAEERTATKNQYYLLEKAKIRHPRIYIQPSDIDNLAVVKV
                     QEARRKLERAFFLVSSYEDYKRKAELKIKEGFINKEDLNSATIEEYIIGTYFNFNFFQ
                     SPLSEEMEFLGIERRLQTNLHDFTTSLPAKQQMQIDIGIQNIEVGHTPASIRESMLEK
                     VFEIGDKFAAAVRTEYPPGIIGPISLQGIVTSDLDLIVYDVSLRVPGNPIMATTSPYT
                     KYTYGHTIGVGRRIAMEIKNAISQKKIMDIVT"
     gene            complement(9452..9892)
                     /locus_tag="VHF08_00775"
     CDS             complement(9452..9892)
                     /locus_tag="VHF08_00775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional nuclease domain-containing protein"
                     /protein_id="HEX2067216.1"
                     /translation="MPNGFSSEEDEEYIQARISYVGFADQLGLEGVVILKTFDGKEFP
                     MRAFSGEVARHISRFQEGDKNTIPTIYNLVEEIAVMQDLLLMEVRVYQSGSVLRANLY
                     FKGRKKEESLILRNYRASDSIALAAYYDIPIKVRKNLFEEAIQQ"
BASE COUNT         3708 a         1625 c         1967 g         2917 t
ORIGIN      
        1 tttttgattc ccttattttg atatattatt ttgatatgtt tacactacgt aataattata
       61 atatttacat atcattacaa aaataaactg actatttttt aattattata ataacttata
      121 agataaagta tatcaataga agggttcaat ttatccgtgt taacaaatgt tggccatctt
      181 tcatcatttc atatgtttaa aacttacaaa aataagcatc tctctacgca cgcactaaga
      241 cagagattta tccttaaatc attagcatta tacgagcagc aaccattata cacgactaga
      301 ggcaatcttt ccacacttct tgcacgagaa tttaatatct ctaagaaaaa tgcatatcaa
      361 tatattttca aggagttaca aaaatgctta attccaaatc agtttgttga agaggcagga
      421 aatgttttga ctacaaaagg accaagaatt ctccaaagga aaggcatacc atcttatcgt
      481 ctaactaaaa tgggaatttt ggtaacatca gctttagagg aacttgaaat taaaaaaaga
      541 aaggaacttc ttgaagatta tttaatttct gcaaaaattt caaatataca cgaattttct
      601 gtgaatgaac aacttctctt ccagcttcgt aaacatcctg aatttgctct ggaatatatc
      661 aggcagggtg ttataaaata tatcgaaggc aaaatcaacc atcctttcga cataattcaa
      721 aacagccaag gtaatctata ttttaatgat aatgaagatt aagagtgcta gggatatcaa
      781 taaactgtta tagtttgtac aagattatta ttacatagcg gttagaaaaa atatataaaa
      841 aatgaaagta tatttgtgat tcggtagatt tttaaggatg ctataagaac aaattctttg
      901 aattatattg acgtcctctc catctgtcga tattcttgag agagcagatg aaaaaattgt
      961 cataaaattt actaatgttc caaggcaata cgtaaatgcc attagaagaa cttcgataag
     1021 cgaagttcct accttagcta tagacgatgt tgtaatttta gagaattcat cggttatgca
     1081 tgatgaagca attgctcata gactaggtct tatcccatta caaacaaaac ttgatagatt
     1141 tataatgcca catgattgcg actgtaaaag tacgttgggc tgctcaaaat gcagagtatt
     1201 attagtatta gattcagagg caaatgagaa aaccaaagta gtcacttctg gtgaactcgt
     1261 gtctgaggat gagcttataa agccggttag taaagacatt ccaattatca ctcttgctcc
     1321 tagtcagaaa ctgaaatttg aggcttatgc aagattagga attggaaggg accatgcgaa
     1381 atggcagccg acttcagcag cgattgttaa ggatggaaat aatgagaatg aatctatcct
     1441 tgttattgaa actaacagag cattaacagc agaagaaaca ctgatggcag ctattgagaa
     1501 aataaattct aaaatcaaga atttcaacca tataatacaa catcttgaag tacctaagaa
     1561 tccctactag gtacatttat ttggggattc acgataactg acggagacga agaataaatt
     1621 atgcttgcta actctgtaat agataacaca atttggactc ttcgtagagc tttcaaaaag
     1681 aataaagctc caatttggaa ggctctagaa aatgagcttt caggtcgaag atcaaataaa
     1741 agagaagtta atgtcggtcg attatcagat attactaaaa atgatgaagt agtcattatt
     1801 cctggcaagg tgttaagttc tggcgcaata gatcacaaat taacggtttg tacattttca
     1861 atttcacaag aagctgcaaa gaagatatta gaatctggag gaaagattat aacacttgat
     1921 caactgatag agaaatatcc tgatggtaat ggagtgcgca taattggcta ataagcaaga
     1981 attgctaaaa agatcatctt cacaaccagc acagaataaa caaatagtaa ttgacgcagc
     2041 aaattgcatc tcgggtagaa tttgctctca tgtttcaaaa ctattgcttc agggaaatag
     2101 agtgacaatt gtaaatgctg aaaaagctat gctatccgga cagaggtaca aaacaatcca
     2161 actttacaaa gaacaccttg aaattaattc agttacaaac cctattcatg gtccttttca
     2221 tcctagaaga cccgatacaa tactaacaaa gatggtaaga ggcatgatac caaaacgcaa
     2281 gagtagtggt atagaagctt ttaaacggtt aagggtttac ataggtattc ctgaatcctt
     2341 aaagaattcc gaaatgaaat attatgatga ctcgaagatc acaaaaccat catcttatta
     2401 tattacagtt ggcgaagtgg caaaagaaat tggatggtct ggaggagtag agtaaataga
     2461 tgaataaaat agatctttat ccaggacaaa gaaaaacatg tcgagccgtg gccacaattt
     2521 ctaaaggaag aggcaaggtg agaatcaata acgttcctgt agaactttta caaccagcag
     2581 tggctaagga attggtaata acacctctcc tcctgatagg agaattgaga aacagggttg
     2641 atataaatgt cagtgtagaa ggtggaggat tcatgggaca ggcttttgca agtgctgttg
     2701 ctatttctaa ggctctaaca ggagaaggga aaggaggaag agatccaaaa gatcatccgt
     2761 tagcaaaaag tgtacgcgaa gaaattagaa aaaaaatcac tgaatttgat agacattttc
     2821 ttgcgggtga tccacgacag agcgagtcca agaaatttgg aggacctgga gctagacgta
     2881 gaaagcagaa atcgtaccgc taattctgct tttcctatct gtattattat ctatatatta
     2941 taaacaatac aagttcgtct gattatttct ctctatttat atctaacaac atatactagt
     3001 gcataataat actcaagaaa ttataatatt ctgaaattaa taacttaata tctaaattaa
     3061 taacttaata tctagatggc tcaatcagtt gatagaatag ataatattta gatatgatct
     3121 atttttgaat agagtagttt tcatgaaagc ttgactgatt ataaattaga aaagttctta
     3181 gatttgagaa ctaactgaca tgcatatata aatgcaagac agtttaattt acagactaat
     3241 gacagatacc aggttaactg ttgttcgact aaccgtagat ggtgataaat ttgaaatttt
     3301 agtaaagccc gatccagctc tagaatacaa actgggtaaa agaactgacc tttctagtgt
     3361 tcttatttct gatgagatat actcagacgc aaataaaggt tcaagagcag ccggtgaaaa
     3421 gttaacaaaa catttcaaga cagcagatcc tacagaagtt gctaaacaaa tcatttctcg
     3481 aggtgaactt agtttgacaa cagagcagcg tcgaaaaata gttgaagaga agaagagaca
     3541 aattattcaa tatattaata aaagctttgt tgatcccaag acacatattc cacatccaat
     3601 tctgagaatc gaaagtgcaa tggacgaagt aagagttatt atcgatccat tcaagagagc
     3661 tgaagatcaa gctaaaactg tcgttgatgc acttcgcaag atattgcctt taaaatcaga
     3721 aattatgcga ttaacggtaa cagttccacc tgaattttca ggtcaatcat atagtgtatt
     3781 taaaacgatt ggaaatttta aaggagagca gtggcttgag aatggttcgt tgagagtcat
     3841 cttagaaata aatgcaggaa tgaaggctgc cttcctagat agaataggat ctataacaaa
     3901 aggttctgct caggtagtag aagagtaaat atttttcgat agttaaaata taggtatgtt
     3961 cttactgacc caaaaggtaa ggaaatgatg caaagaatct tttggtatat tgaggctttt
     4021 acattggggg ttatttaata tgggcatgca agaaattaaa agaaagtttg ttgttccagg
     4081 agataagatc gctgatggga atttcaagcc gttaatgaat gtaattaaag tgaacaatac
     4141 tattattgct actagaattg gaattgcaga agcaggaaga gatggcatta aagttatacc
     4201 actatcaggt gtgtacattc ctcgggtaaa tgatattgta ataggcaaga ttaccgatca
     4261 ttcttctctt tcttgggaag tagacatcaa ctcttgtttt tctggtcatc tacctgcaca
     4321 ggatgttttt ggaagagact tttctccagc tagggacgat atgggcagac agttggcaat
     4381 aggagatcta atcacagcaa gaattattgt attcgatagg acaagagatc caatgctaac
     4441 tatccaggac aaggatctag gaaagatccc tcgtggagaa tttttaaaaa tttctgcaac
     4501 acgtgtccca cgtctgattg gaaagcgcgg ttctatgata caaacaatag aacaagcaac
     4561 acaaacaaga gttttaattg ggcaaaatgg gattgttgtc gttacgggta gaaatcccga
     4621 aggaataaac ctagccgtta gagccattag aatggttgaa gaagaagctc acacatcaaa
     4681 cctaacacaa agggtcaaag ttttgttgaa tgtgcctgat actccacaac aaactgaagg
     4741 aggaacgtcg gtaactcaga ttgaaaaagg tgagaaggtt gaggagatcc agtcaacaat
     4801 tcaagaagta gaagaagaga tagaagaaga acttgaaaaa ggcgaaaaat tataaatgat
     4861 ccaaacacga aatttaattg atgaaaacgg aaggcgaact gatggtcgca ctgcagatga
     4921 actacgagaa atcaagataa atgtaggcgt agttaaaaat gcagacggtt cagctttcat
     4981 agaatttggc aagaataaaa taatagcagc agtctatggc ccaagggaag ttcatccaaa
     5041 acatatggca cttccggacc ggtgcgttct acgatgtaga taccatatgt ctcctttctc
     5101 tactgatacg cgcaaaaacc ctgctccatc aagaagagaa attgagattt ccaaggtaat
     5161 gagagaagca ttagaaccgg cgttgatatt ggaagattat ccgcgagctg caatagatgt
     5221 atttgttgag gtcttgcaag cagatggtgg ttcaagatgt gctggtatta cagccgcatc
     5281 tgtcgcatta gctgatgcag gaataaatat gcgagacatt gtagcatcct gtgctgcagg
     5341 taaagtcgat gagaaaattg ttctggatat taatgacact gaagataagg aaggtggggc
     5401 ggatatgcca gttgcatata tgccacatct tgaacaaata acacttttac aacttgatgg
     5461 catattaaac cacgaacagt ttaatgaatg tgtagataag gcgataagag gttgcgagat
     5521 agtttatgaa attcagaggc aagtgttaat gcaaaaatac tttggtaatg aaacggagct
     5581 gaaagaagaa caatgagctc atcaaaacgt tcaacaataa tagtagaaca cctacgaaaa
     5641 cagcaaatgt gggatgctat ttcaaaggga aaaaggctgg atggaaggaa tttagatgat
     5701 attaggccac ttgaaattga attagatatt ataaagaagg caaacggttc tgcaaaagta
     5761 aaattaggca attcagaagt tattgcagga gtaaaaattg agacaggcga accatttgaa
     5821 ggacttgaga acaaaggtgc gctaatcgta tctgcagaag tacttcctac agcatcacct
     5881 tatatcgaac ccggccctcc agatgaggag accgttgaac ttgcaagagt ggtagataga
     5941 ggcataaggg aatctgaaat gatagatcta gataaattgg ttttagttcc tggcaaaata
     6001 gtttatacga tatttgttga ttgcagtatc atcaatgcgg atggtaatct gtttgatgct
     6061 acgtcctatg cagtagtttc ggcattagct agtagtaaaa ttcctgtttt tgaaatgcaa
     6121 gatggcaaag tggttaatac tgggaacaac caagacccac cagtcactac aatacctgta
     6181 tcaatcaccg cgatacgaat tggtgaagca gtaattttag atcctacatc tgaagaagaa
     6241 gcatgtatga atgcaagaat caccataaca acaaattcca atggagacta tactgccatc
     6301 cagaagggat cgacaggtgc ttttactgtt ggacagataa agaaagcagc tgagacagca
     6361 agaattaaag gagaggaagt acgagccaaa ctaaaggagt tgactagagc tggttagtag
     6421 aaagaagcag gcccatactg ggctcaaagg tttaggtata aaatttggag ctactgtacg
     6481 taaaagatat ggaatggcat ataatacatt aaagcaaaag agacgatgcc cgtcttgtgg
     6541 ttcactgcaa ttcaatagga ttgcatcagg catctggtat tgcccaaaat gccgttataa
     6601 agttgcagct ggagcatatg acatcgatac tgaaaaacta caaagctagt ctgcaaattt
     6661 cttttaagaa taagccaata tccatacgta gatctattgc aaaatgtatt tgttctgcac
     6721 ttaagcccga tacgaagatt tcgtctggtt caagagagaa aataaaaatt tcatcggata
     6781 tttctaatgt atttatagaa attgagagtg atgatattcc tagtctacgc gccactatca
     6841 attcatattt aagactcatt aatacctctt acaaatgtat tataaattag cggtatgatt
     6901 ttatggtggt tactttcatc ttaagaattg aattattatg agtgaacaag aacttccacc
     6961 ttggcttagg gagcaagtat cacgtttgca acaacttcaa cagaatttgc aggcaatcat
     7021 gatgcaaaaa cagcaaatag aactagaaat tgttgaaacc gatcgagcac tagaagaact
     7081 gaagaaaata gggatagatg atgcagtata caaaagcgct ggccctttgt tgataaaggc
     7141 aaataaagag ggcactttaa aagaacttga agaaaaaaaa gagctgtcaa acactagagt
     7201 aacggttctt gcaaaacagg aggcaagggt aaaagataat ctaaaagaag tagaaaataa
     7261 aattaatcaa atgattcgag gtgcacaagg cagcgacagt ggttctatag caggtttaaa
     7321 accaaaatga taataaccaa tgcaaaatac agagaaggaa gaagacatca tttttgatta
     7381 aataataaag ttagatacat taacgacagc tgattaaact aatatgtgtc tgttagaatt
     7441 gtagttgacg aaagggagcg aaatagtaga gttcctaatc tcttacgtca agcaggtgca
     7501 ataatagatt ttgcgcattt gaaagttggt gattatattg tctcaccaga cattgcaata
     7561 gaaagaaaaa ccattcatga tctaatcagc tctatctacg atggaagatt atttgtgcag
     7621 tgctcagaac ttgctcaata ctattccaaa cctatagtga ttattgaagg aaatatcata
     7681 gaattactca aagtccctat agaaatagat gatgacaaat taaaaatatt agtagaaaga
     7741 attcccttag catatgacgc aatagctaaa gtgacgctag actttagaat cccaattata
     7801 catacacctt ctgctcatta tacatcacag ttacttatta ctatggtaaa caaatcatta
     7861 caagaaggcc aaaataccgg tcctttgtta aagaggataa aaaagggaaa cccactatat
     7921 gcacaacagc tatcaattct ctcttcttta ccaggaattg gagacaagct ggcagtaaga
     7981 atgcttaaaa aatttcagac gccccagcgt gcgctaaatg catctgttgc agatcttgca
     8041 aggattcctg gttttgggac tgccagagca gaaaaagtac gaaaaattct ggataatcct
     8101 cataatgaaa ggattgagct aacacaaaga actcttttag atgatgattt aagcagtctt
     8161 aataatacgg aatagtatat ttcattgaat agatcattat aatatggtta acgatatcat
     8221 ctcaacaaat atatatagtt ggcttagttg aacagaaatt aaaaagcata ggataaagaa
     8281 tgataatttc tcttttaact tatagaaact ttttattaca atccttctga gccctactat
     8341 aagattgatt acttgtcatg aagttaatcg cattgtcaat caatataaat taaaggatat
     8401 cactattggc acaataggaa gccattctgc attagaaatt atggatggat ctaaagatga
     8461 aaatctaaag actgtctgct tttgccaaaa gggtcgagag atcccgtatc taagatttaa
     8521 gagattaaca gacgagatca tcttgcttga taaattttct gatattatgt tgagagaaaa
     8581 tcaagaaaaa ttgcgacaat taaatacaat catgattgca aatcgtgcct ttactgccta
     8641 tcttggttat gataatattg aaaacaattt aaatgtacct atatttggaa atagactgct
     8701 cctgcgagca gaagaacgta ctgcaacaaa aaatcaatac tatcttcttg aaaaggcaaa
     8761 gataagacac ccgaggatat acatacaacc ctcagatata gacaacttgg cagtagtcaa
     8821 agttcaggaa gcaagacgga aactagaaag ggcgtttttc ctggtgtctt catatgaaga
     8881 ttacaagagg aaagcagagt taaagatcaa agaaggtttc attaataaag aagatcttaa
     8941 ctctgcaact attgaagaat atataattgg aacttatttt aactttaact tttttcaatc
     9001 cccattatca gaagagatgg agttcttggg aatagaaaga agactgcaaa ccaatcttca
     9061 tgactttact acttcactac ctgctaaaca gcagatgcaa atagatattg ggatacaaaa
     9121 tattgaagta ggacatactc cagctagtat acgcgaatca atgttggaaa aagtgtttga
     9181 aattggtgat aaatttgccg ctgccgtcag gacagaatat ccgcctggaa taattggacc
     9241 aatttcatta cagggtatcg taacatcaga cctagacttg atagtatatg atgtatcact
     9301 aagagttcca ggtaatccta tcatggcaac aacaagccct tatacgaaat atacttatgg
     9361 tcatactatt ggcgttggtc gaagaattgc aatggaaatt aagaatgcaa tatcacaaaa
     9421 gaagatcatg gatatagtaa catgatgata tttattgctg tattgcttct tcaaataaat
     9481 tctttcttac tttgattgga atatcataat aagctgccaa agcaatggaa tctgatgcac
     9541 gataatttct tagtatcaaa gattcttctt tttttctacc tttgaaatac agatttgcac
     9601 gcagaacaga accactttga taaactctta cttccatcaa aagtagatct tgcataactg
     9661 caatttcttc aactagatta tagattgtag gtatagtatt tttgtctcct tcttgaaatc
     9721 gtgagatatg ccttgcaact tcgccagaga atgcacgcat tggaaattct tttccatcga
     9781 aagtttttag aataacaaca ccttctagtc ctagctgatc tgcaaatcca acataactta
     9841 ttcttgcctg tatatactct tcatcttctt ctgacgagaa accattaggc ataacaatta
     9901 attattgcat tgctaagaat taaggtttac agttgatctg ttctattaac ctcttttaac
     9961 aagtcagcat ttatccatta ttgtgatagt ttaaatgatt tcttcctttg ttgctggcta
    10021 taaactcaag gattacctgc ttgcgtattg ctttaacctt tttctttata tgaatgaaga
    10081 tttgaatgat tttctcttta ttattcgata gcagtatctc cctatgctat aaaaaatata
    10141 tatatatata tatatatata aaaagagtaa tacattttcc tttagaaatt attaaccaaa
    10201 ccaatagtgg ctttcgg
//
LOCUS       DATAAS010000051         5331 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_45276, whole genome shotgun sequence.
ACCESSION   DATAAS010000051 DATAAS010000000
VERSION     DATAAS010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5331
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_45276"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(155..913)
                     /locus_tag="VHF08_00780"
     CDS             complement(155..913)
                     /locus_tag="VHF08_00780"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2067217.1"
                     /translation="MSLKGKIAVVTGSTKGIGFAISKEFAENNGATVIVCSRSIQNAE
                     RAAEQINGKVFAAEIDITNNSSVRSFLQYVISNHNRIDILINNAGYPFDSGIWYKEFH
                     MTTDDELDKIIEVDLKGSVRLSKAVIKYMLKDAIGGVIINISSTPAIVGHVQGAPYTL
                     AKAALIALTKHIAMEYGRNNIRAYTLALGNIATEATFNSMSKENRKKAGEEASMKRWG
                     KPEEVAKVAACLAGCNFSFTTGNTIVIDGGTVLL"
     gene            1012..1908
                     /locus_tag="VHF08_00785"
     CDS             1012..1908
                     /locus_tag="VHF08_00785"
                     /inference="COORDINATES: protein motif:HMM:NF013341.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIO1 family regulatory kinase/ATPase"
                     /protein_id="HEX2067218.1"
                     /translation="MSSLEVAVAIVRTLELEDFKLLKVFVSAMKHHESLTRQQIVNYS
                     KQHRDYIDYRIRRLHEMKLLGKTEAGYTLLMAGLDAIALKILADKDVIVGMGKPIGIG
                     KESDVIKAVTPSGEERAIKFFRIGRISFRDVRRKRTYKDNESVHNWLLINIEAAKKEY
                     RILHALKSTGIRIPTGYYRAMHCIVMNNICGSRLVDQKKLRRPALALQSILSDLRTCY
                     NNDIINCDVSEYNTVLDVNDNIWIIDWPQAVSRKHPNANELIKRDVFNIVKFFNRRFG
                     TRKDVEEALEEVITPPPPRPAI"
     gene            complement(1901..3046)
                     /gene="metK"
                     /locus_tag="VHF08_00790"
     CDS             complement(1901..3046)
                     /gene="metK"
                     /locus_tag="VHF08_00790"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004478 - methionine adenosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0006556 - S-adenosylmethionine biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEX2067219.1"
                     /translation="MVRKYLFTSESVTEGHPDKVCDQISDSILDKFLEQDVDSRVAVE
                     SMTTTGIVFVAGETSSKGHVDVQNIVRDTIREIGYTKPEYGFDYKSCSVLVSLHEQSP
                     DISMGISAMDNKEQGAGDQGLMFGYASNETPELMPLPITLAHKLTMKLSQVRKNKDLS
                     WVWPDGKSQVSVVYEDSKPKKIDTIVISTQHSPDISLSQLREEIIDKVIKPVCGSWID
                     NTTKFLVNPTGRFVIGGPPGDTGLTGRKVIADTYGGVGRHGGGAFSGKDPSKVDRSAC
                     YMARYVAKNIVATGLADKCEVQIAYAIGVANPVSVMVDTFGTGKINEDVIEAKVENTF
                     DMRPAGIIKTLDLKRPIYKKTAAYGHFGRDEPSFTWEKTDKVIELLK"
     gene            complement(3118..3375)
                     /locus_tag="VHF08_00795"
     CDS             complement(3118..3375)
                     /locus_tag="VHF08_00795"
                     /inference="COORDINATES: protein motif:HMM:NF013582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LSM domain-containing protein"
                     /protein_id="HEX2067220.1"
                     /translation="MSSPSPSQQQPKRPLSTLQRFINRRVAVRLKSEIEYRGRMNNVD
                     SYMNLILMDAEEYNGQDVLANYGKVVIRGNNVLFIRVEKEF"
     gene            3482..4219
                     /locus_tag="VHF08_00800"
     CDS             3482..4219
                     /locus_tag="VHF08_00800"
                     /inference="COORDINATES: protein motif:HMM:NF020014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067221.1"
                     /translation="MIISTGSLSLDRLLGGGIRTGLVTDIYGPSGTGKSQLCFSLCVN
                     SAKYLKQKEMIMFVDTVGTFRPERVSEIANQERNNEILDKIILIRAFSTNDQIKSIKK
                     IYDIKPLLIIIDSATSLFSTEYKGAARHLVLMNHLHKLSFAAINFDCAVVITNMVRNV
                     PVVRTITDHGDNNIDKMISTTTTTTNSYQQREFMGTSVSIYSHIKLRLQIVNSEKSIV
                     EASLMQPMRRSPVSFRIISRGFSDQIK"
     gene            4770..5099
                     /locus_tag="VHF08_00805"
     CDS             4770..5099
                     /locus_tag="VHF08_00805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTPase"
                     /protein_id="HEX2067222.1"
                     /translation="MDNLELIFDMQRSLAEIIKSPRYPRQKEERISALSTAIIHEAIE
                     LQRLTNWKWWKKPVSFDEEMAKEEIIDIWHFVIQASLELGMTPSDILKEYSKKNQINR
                     NRQEYNY"
BASE COUNT         1692 a          984 c          881 g         1774 t
ORIGIN      
        1 ctgcagccgc tgaagttccg gtagtgtagc ctgtcctcag tttgccttgt tttcgctttt
       61 cttcaatttc aaaaggaagt tcctgttctt gttcagctaa ctttaattct tcttcttctt
      121 cgcttttttc aagatatgcc aactagttac cccactacaa taatacagtg ccaccgtcta
      181 ttacaattgt attgcctgtt gtaaatgaaa agttacaacc tgccagacag gcagcgacct
      241 tggcaacttc ctctggtttt ccccaccttt tcattgatgc ttcttcaccg gccttcttcc
      301 tattttcctt actcatagaa ttgaatgttg cctctgttgc tatgttacca agagccagag
      361 tataagctcg aatattattt cttccatact ccattgcaat atgtttcgtc aatgctataa
      421 gtgcagcttt agctaaagta taaggcgccc cttgaacatg tcccactata gcaggagttg
      481 aagatatatt aattattact cctcctattg catcttttag catatatttg ataactgcct
      541 tagatagtcg aacagatcct tttaaatcaa cttctataat tttatctaat tcgtcatctg
      601 tagtcatatg aaattcttta taccaaattc cactatcgaa aggatatccc gcattattta
      661 ttagaatatc aattctattg tggttcgaga taacatactg caaaaaactc ctcacgctag
      721 agttgttagt tatatcaatt tctgcggcaa aaactttacc gttgatttgt tcagctgctc
      781 tctctgcatt ttgaatactc cttgaacaga caatgactgt tgcaccatta ttttctgcaa
      841 attcttttga gatagcaaaa ccaatgcctt tagtagagcc tgtaacaact gctatctttc
      901 ctttaagcga caacttactc gttatttttt ttactataag tatgtttata gctatctata
      961 tgattgtttc aaaaccattt aattgacaga atcatattat gattagcctt catgtcttct
     1021 ttagaagttg cagtcgcaat agttagaacg ctagagctag aggattttaa gctgcttaaa
     1081 gtttttgtat ctgctatgaa acatcatgaa tctttaacaa ggcaacaaat agtgaattat
     1141 tcaaaacaac atcgagacta tatcgattat cgaatccgtc gacttcatga aatgaaatta
     1201 ttaggaaaga ccgaagctgg atatacactt ctcatggcag gtcttgatgc aattgccctc
     1261 aagatacttg ctgataaaga cgtgatagta gggatgggaa aacccatagg tattggcaaa
     1321 gaatcagatg taattaaagc agttactcca tcaggtgaag aacgtgcaat caagttcttt
     1381 agaattggca ggattagttt cagagatgta aggagaaaaa gaacatataa agataatgaa
     1441 agtgttcata attggctact aataaacata gaggcagcaa aaaaagaata tcgcatttta
     1501 cacgcgctta aaagtactgg aataagaatt cctactggat attatcgtgc aatgcactgt
     1561 atcgtaatga ataatatatg cggatcaaga cttgttgatc aaaaaaaatt aaggaggcct
     1621 gcactggctt tacaaagtat tttaagtgat cttcgaactt gttacaataa tgatatcatt
     1681 aattgtgatg tcagtgaata taatactgta ttagacgtta atgataatat ttggataatt
     1741 gattggccac aggctgtctc aagaaaacat ccaaatgcta atgaattaat aaaaagagac
     1801 gtttttaata tcgtaaaatt ttttaataga agattcggga caagaaaaga tgtagaagaa
     1861 gcattagagg aagtaattac tcctcctcct cctcgaccag ctatttgagt aattctataa
     1921 ccttatctgt tttttcccat gtaaaagagg gttcgtctcg accaaaatgt ccgtatgctg
     1981 cagttttttt gtagatgggt cttttcagat cgagcgtctt aattattccc gctggtctca
     2041 tgtcaaaggt gttttccacc ttggcttcta ttacatcttc atttatcttt cctgtgccaa
     2101 aggtatctac cattactgaa actgggttag ccacacctat tgcatatgca atctggacct
     2161 cacacttatc ggctaatcct gttgcgacaa tattctttgc tacatatctt gccatatagc
     2221 aagcggacct gtccaccttg gacggatcct tacctgaaaa tgcgccacca ccgtggcgcc
     2281 ctacgccccc ataagtatca gcaataactt ttctaccagt caaacctgtg tcgccgggtg
     2341 gaccgccaat tacaaaccgt cctgtaggat taacaagaaa tttggttgta ttgtcaatcc
     2401 agctgccaca aactggcttg attaccttgt cgataatctc ttctctcaat tgactcaagc
     2461 ttatatcagg cgaatgttgc gttgaaatta cgatagtgtc tatttttttt ggtttagaat
     2521 cttcatatac aacagaaacc tgagattttc catccggcca gacccagctc aaatccttat
     2581 tctttctaac ctgagatagt ttcatagtca gtttatgagc aagagttatt ggtagtggca
     2641 ttaattcagg agtttcattt gatgcatagc cgaacataag tccttggtct cctgctccct
     2701 gttctttgtt atccatagca gatattccca ttgaaatatc tggactctgt tcatgtaatg
     2761 agactagaac cgaacaactt ttatagtcga atccgtattc tggcttggta tagcctattt
     2821 ctcgaatggt gtcacgcaca atattctgaa catccacatg tccttttgag gaagtctcac
     2881 ctgctacaaa gacaatacct gtagttgtca tcgattctac tgcaacacgc gagtcaacat
     2941 cctgttccaa aaatttatcg agtattgagt cagaaatctg gtcacatact ttgtccggat
     3001 gaccttcggt aacactttcc gaggtgaata gatattttct aaccatatct cttactttat
     3061 tttatttatt ttcagagcag tgacaaataa gaagagattt tcttcttctc atatccatta
     3121 gaactctttc tctactctta taaacaacac attattacct ctaattacaa ccttaccgta
     3181 atttgcaaga acatcttgac cattatattc ctcggcatcc ataagtatta ggttcatgta
     3241 ggaatcgaca ttattcattc tacctctgta ttctatttca ctcttcaatc tcacggcaac
     3301 cctcctattt atgaaacgtt gtaaagtaga caaaggccgc tttggttgct gctgagatgg
     3361 cgatggagat gacattcaat taatcacttt gcaattgaag acatcgtggc tagaataaat
     3421 agtttcctcg tagagccaac tgaatttatt ataaataggt acattattta aagtgttgta
     3481 tatgattata tctaccggat cattatcact ggatcgtctt ttaggaggtg gcattcgtac
     3541 tggcttagtt acagacattt atggaccgag cggcactgga aagtctcaat tgtgtttttc
     3601 attatgtgtt aactctgcca aatatctaaa acagaaggaa atgataatgt ttgttgatac
     3661 agtaggaaca tttagacctg aaagagtttc tgaaattgcg aatcaagaga gaaataatga
     3721 aattcttgat aaaattatac ttattagagc attttctacg aatgaccaga taaaatctat
     3781 taagaaaatc tacgatatta aacccctcct aataataata gatagcgcaa catcgctatt
     3841 ttcaacagag tataaaggtg ccgcaaggca tctagtgtta atgaatcatc tgcataaatt
     3901 atcttttgct gctattaatt ttgattgtgc agttgtaata accaatatgg ttcgtaatgt
     3961 acctgttgtt agaacaataa cagaccacgg tgacaataat atcgataaaa tgataagcac
     4021 aacaacaacg acaaccaatt catatcaaca gcgcgaattt atgggaacat cagtctcgat
     4081 ctattcacat attaaattga ggcttcaaat tgttaactct gaaaaatcca tagttgaagc
     4141 gagtcttatg cagcctatgc gtcgaagtcc agtaagtttt aggataatat ccagaggttt
     4201 ctcagatcaa attaaataat aactagaaga gcagaatgat atataggaat tttctcttct
     4261 gaatcaatat gtaatctcca agacaataac tcagtttcta tctctttatt tagatatata
     4321 tatatatata tatatttatt tattacttaa aatataacaa atatatatct taattttact
     4381 tattgtgcta attagatcat actaaaacaa ttgcaataag ttttatgtga ttttatgctt
     4441 tctttataaa ataaataaac attatatata tgcatgaaaa aacctcaaag caataagaat
     4501 atctaagaga tctaattatc acgatatgat tggagtgtca attatgactt tcttaatctt
     4561 gatttaatta atgatatcta gttatatgta tcaacttttg gtggtgatgc ctctagctca
     4621 aaattcgatt tatacaaata tatagatata taaatatata tataggcata tgattgcttc
     4681 ttaattttta gatgattaga tttttagttg ttttacacgc taaattctta aacaagtata
     4741 caaataaaaa tatcgaagat aaattgacaa tggacaattt ggaattgatt ttcgacatgc
     4801 aaagatcatt ggcagaaatt atcaaatcac ctagatatcc aagacagaag gaagaacgca
     4861 tatctgccct tagcactgcc attatccatg aggcgataga attgcagagg ctcacaaatt
     4921 ggaagtggtg gaaaaagcct gtttcgtttg atgaagagat ggcaaaagag gagataattg
     4981 atatatggca ttttgtaatc caagcatcac ttgaacttgg aatgactcct tctgatattt
     5041 tgaaagaata ttccaaaaaa aatcagatta ataggaatag acaagaatac aactactgac
     5101 aatgtcatag aatgttctgc actatcaata cttttaaatc tataatcaat ttttagttcc
     5161 cgatctactt gttttaatgt tgcaaaggaa gaaattcaga aagatgttgt gaccggtctt
     5221 atccatactt tgccgtgatt gttgaccata ttttcatgta ttaataataa cagcactagt
     5281 tctactaagt gtacctacct gtgtgtctct ctctattgtg cctatcaaaa c
//
LOCUS       DATAAS010000052         1647 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4908731, whole genome shotgun sequence.
ACCESSION   DATAAS010000052 DATAAS010000000
VERSION     DATAAS010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1647
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4908731"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            115..1323
                     /locus_tag="VHF08_00810"
     CDS             115..1323
                     /locus_tag="VHF08_00810"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEX2067223.1"
                     /translation="MADDNDSIENVLIMQGGGSLGAFGCGVFKALRKNKIKLNILAGT
                     SIGGVNAALMAGSKEEDHPERALEQFWLEIAENSVKLNSPIDEWLGVNNTTTYPFFFP
                     LTAAANASSNTNTQHNLQFKSLFSFYSSAIYGNDKMFVPRWRPDYSLTDPQYFTPWKW
                     TYLYDHSPLLKTLEKYIDYNKIQPNAKYNSPRLIITAVNVLTAEPLTFDSSEIKITPR
                     HLLATSGYPLYGFPWVEVEEGVYAWDGSLLSNTPLREVIDAAPVTDKQIFLVENYPKN
                     IDNLPQNLPEVFHRARDIMFSDKTSHNVKMSKVITQYLRYIEELYNIFQDHVDPDKLD
                     KEVVNKIERKYKKIKEDHGAEIKSEHYITREEKHPHMYENADFSIKTIKESIKDGELK
                     TNEIIKNIRK"
BASE COUNT          644 a          262 c          277 g          464 t
ORIGIN      
        1 gagttatcat atcaggtcaa ttatattctt aataaactaa ttattaataa tcatgtagtc
       61 tgatataggt attgtttcta atatcatgat gataaagggg ggtaaaattt cgctatggct
      121 gatgataatg attccatcga gaatgttctt ataatgcaag gaggaggctc attaggtgcc
      181 tttggttgtg gagtattcaa ggcacttaga aaaaataaga taaaactcaa tattcttgct
      241 ggtacttcaa taggtggtgt aaatgccgct ctaatggctg gcagtaaaga agaagatcac
      301 ccagaaagag cactagaaca attctggtta gaaatagctg aaaattctgt aaaattgaat
      361 tctcctatag atgaatggct gggagtaaat aatactacga cttacccttt cttcttccca
      421 ttaacagcag cagcaaatgc atcttcaaac actaacacac aacacaattt acaatttaag
      481 tcactttttt ccttttatag ttcagcaatt tatggaaatg ataagatgtt tgtaccgcgg
      541 tggagacctg actactcatt aactgatccg cagtatttta caccatggaa atggacatac
      601 ttatatgatc attccccttt gctaaaaaca ctcgaaaaat acattgacta caataagata
      661 caacccaatg caaagtacaa ttcaccccgt ctaattataa cagcagttaa tgttttaact
      721 gcagaaccat tgacatttga tagttctgaa ataaaaataa ctccgcgaca tttacttgct
      781 acttcaggat atccattata cggttttcca tgggtagaag tagaagaagg cgtgtatgct
      841 tgggatggca gtctattaag taatactccg ctaagggagg taatagatgc tgctcccgtc
      901 accgataaac aaattttcct agtggaaaat tatccaaaaa acatagataa tcttccacaa
      961 aatctgcctg aggtctttca cagagctaga gatattatgt tcagtgataa gacatcacac
     1021 aatgttaaga tgtctaaagt aataactcaa tatctaagat atattgaaga gctctataac
     1081 atatttcaag atcatgtaga cccagataaa ttagataagg aggtagttaa taaaatcgaa
     1141 agaaaatata agaaaattaa agaagatcac ggagcagaaa ttaagagtga acattatata
     1201 acaagagaag agaaacaccc tcatatgtac gaaaacgccg atttttctat aaaaactata
     1261 aaggagtcaa ttaaggatgg agaactaaag acaaacgaaa taataaaaaa tatcagaaag
     1321 tgactaaaaa atattctagc aagagaattt aacacttgtt aaaacattag caaagcaaat
     1381 atgcgtttat caaatattgt gcatactact aaaggatgaa gtaatctaca ataaacgtaa
     1441 aaattgacat tccacaagat cagaatcatt gacatacaat ttctttcaca actaatgaag
     1501 aagaaacagc aatgacctaa gagatatgaa aaataaataa agataaagag gaaggtaaaa
     1561 aacaacagat acgtcgaagg caaattctga ttccgtattg ttatgaacat ctaaatattc
     1621 atgttaaaca ttagaaatta tttcttt
//
LOCUS       DATAAS010000053         2496 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2207322, whole genome shotgun sequence.
ACCESSION   DATAAS010000053 DATAAS010000000
VERSION     DATAAS010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2496)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2496)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2496
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2207322"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            49..345
                     /locus_tag="VHF08_00815"
     CDS             49..345
                     /locus_tag="VHF08_00815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067224.1"
                     /translation="MPTKVTTISKIVSLPNSTNSDLINEFHQYMKSNEAPERHQNNNL
                     KAVIAFADFLGTDTTFLDVQLKEQIMSFLDTKIKNVQEDPDKKWITTWNDISIE"
     gene            907..1968
                     /locus_tag="VHF08_00820"
     CDS             907..1968
                     /locus_tag="VHF08_00820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEX2067225.1"
                     /translation="MKAAVYHEHNKDPQKVVKIEEIEIPKIRHNQVLIKVEAASYNYN
                     DLWGIWGEPIKIPLPHISGSDISGTVVDVGENVLDIKKGDRIVGHPNLTCRICKYCTS
                     GKEYDCRQRQVWGFQTGPLWGGFAQYTYLPEVNVIKIPDNLSFQEAAAISMVGMTAWH
                     MLVTRANIQPGQTVLIMGGGSGMGIAGIQIAKLFNCDIIATAGNQEKMDKCLELGADH
                     VVNHRESDWYKKVRNLTANNNQGEGVDIIFEHIGKSVFAQEVSLLNMGGTLVSTGATT
                     GYDSKLDLRYLFFRGLNLIGATQGTKAGLEEVIKWTSKGKIKAIIDTIYPFEDMVMGH
                     IKMMESQLFGKLVTTPQKL"
BASE COUNT          932 a          352 c          448 g          764 t
ORIGIN      
        1 tcacgcacgt attataccgt aaatctcttg gaaggaggat cagtataatt gcctactaaa
       61 gttactacta taagcaaaat cgtatcatta cctaactcta caaattctga tctaatcaat
      121 gagtttcatc aatacatgaa atccaatgaa gccccagagc gtcaccagaa caacaatctg
      181 aaagcagtta tagcatttgc tgactttcta ggtacagata caacatttct agatgttcaa
      241 ttaaaagaac agataatgtc ctttctagat actaaaataa aaaatgtaca agaagatcct
      301 gacaaaaaat ggataactac atggaatgat atctccatcg aataaagcat tttttaggtg
      361 actttacaat tagaaagatg tagaggttaa aggattagta aaacgagaaa tactaacaca
      421 acaagattgg gaaactccaa gttttgctag aataagagag aaaagatcta agcgtttagt
      481 cccttttaga gacagaatta tgggagcgtg atgagctgct ctcaataata aaatatgagc
      541 catataagag aaataaagca gctttagcac ttttctggga tttagatgca agaaatcatg
      601 aagtcacact tctgaagata aagtatatta gatcaagaga acgatatggt gaaggtgaaa
      661 aatctataga gaaatattca ttgcttattt tattatctat aaaaattaaa tctcaattgt
      721 tcaatatcgg ctgcaatact cactattctc ttcattgaca aagaggtaga ttttttacaa
      781 tccctatctt gctttagatt actttagatg ttatcgttgt agattgtttt tttctcgtaa
      841 taattatttt tttacaacgt cttgtaaacc tatttaaatt ttctattcta tattttttat
      901 agtaaaatga aggcagcagt atatcatgaa cataataaag atccacaaaa agttgtaaaa
      961 atagaagaga tagaaattcc taaaattagg cataaccaag ttcttataaa agttgaagca
     1021 gcatcttata attacaatga tctttgggga atatggggag aaccaattaa gattcctctt
     1081 cctcacattt ctggaagcga tatttccgga acagtagtag atgttggaga aaatgtttta
     1141 gatataaaaa aaggagacag aatagtagga catcccaatc taacctgtag aatatgtaag
     1201 tattgtactt ctggcaaaga atatgattgt cgccaaagac aagtatgggg ttttcaaact
     1261 ggtcctttat ggggaggatt tgctcaatat acatatttac cagaagtcaa tgttataaaa
     1321 atcccagata atctttcttt tcaagaagca gcggctattt ctatggttgg aatgacagcc
     1381 tggcacatgt tagttactag agctaatatt caaccaggac aaactgtttt gattatggga
     1441 ggtggaagtg gtatgggaat agcaggtatt caaattgcaa agttgttcaa ttgtgatatt
     1501 attgcaacag ctggtaatca agaaaaaatg gataaatgtc ttgaattagg tgctgatcat
     1561 gttgtaaatc atagagaatc agattggtac aagaaagtta gaaatttaac agcaaataat
     1621 aatcaaggag aaggtgtaga tattattttt gaacatattg gaaagtctgt atttgcacaa
     1681 gaagttagtc tcttaaacat gggaggcacc ttagtatcta ctggagccac aactggatat
     1741 gactcgaaac tagacttgag atatctcttc tttagaggac taaatcttat tggagctact
     1801 caaggaacga aggcaggatt agaagaagta attaaatgga caagtaaagg aaaaataaaa
     1861 gcaataatag atacgattta tccatttgaa gatatggtga tgggtcacat aaaaatgatg
     1921 gaatcacaat tgtttgggaa gttagttact actccacaaa aattataaag ttagttaaaa
     1981 atagaatata gcattaccat atattatcga gcaagtattg aaattccaaa ttatagaata
     2041 taaaatgact caaataaaaa gaggtacttc tttagttata ttatatgtaa ttggccccac
     2101 tttatcgagg gattcaaatc caaaatatta ttgaaaagtg ttggacccat atttttatag
     2161 taggaccaaa atttaggtca aatttgtttc acattccact ggccctacat tgatagcact
     2221 atttttggga ttctgaaata taaaaagtga aaacagatat tggaaatcaa gaatccaata
     2281 gtaatttcga agtaaaggaa aacctcccga aacgaaaggg ctcagctgct tgataattaa
     2341 aatagtatat ttttttgaat acgaatcagg ttattatttt ttctttggaa aatcatgtaa
     2401 ttcattagat aaacacctca agcaattcct tggttcatta ctgctcagat aggaaatgta
     2461 aaaacattta gagcattgta atcgggaaag tctgca
//
LOCUS       DATAAS010000054         6356 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4369704, whole genome shotgun sequence.
ACCESSION   DATAAS010000054 DATAAS010000000
VERSION     DATAAS010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6356)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6356)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6356
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4369704"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(82..258)
                     /locus_tag="VHF08_00825"
     CDS             complement(82..258)
                     /locus_tag="VHF08_00825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067226.1"
                     /translation="MFTRKESSDRYGWWLNELNSLGIVPKKTNELNDKQEIIDLSENI
                     KQILYQDYKTAYNE"
     gene            complement(854..2275)
                     /locus_tag="VHF08_00830"
     CDS             complement(854..2275)
                     /locus_tag="VHF08_00830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067227.1"
                     /translation="MEEDKNDSSLSYAKIDDDTHDDSINTLEKTAKKVANVISKSLGS
                     GAKAAEKKVLEAQDLIDSKQVGTEEQLATENIAKFENLAKQPNIDGELASFEGRYPKD
                     LFNKSVFSNDKQTLIGHVTKETDSSIVVFSDSDNSRFDIPKSKITVDGGSVVLNHSDV
                     SLLQYKVDGEAPLPEDKSLRPSAKEIFHTPKETKVEEELKEKQDKEEINIQTTTADAM
                     IKESQQLANSPRPATTTVRVSKPESYHYDESEIVKKVKHAASDLKDIISSAAKITERK
                     VKELREAEEERQAERDAENISKMGELATQFTNSFEDVLSEIRTRTYAEQEQIYLGFLK
                     LIDQQRELILARKDLATRLKASVRKPVVVLGGSEDIDKLPKNLQAPELQGQQQPQLPE
                     EMVSQEQIKGSEGFIMADEPTEQTAAIQKSSQDVDISTEIPSAEIQPGVIATDENEES
                     KKRSQSPKKSKHNKKISKESTSE"
     gene            complement(2908..4149)
                     /locus_tag="VHF08_00835"
     CDS             complement(2908..4149)
                     /locus_tag="VHF08_00835"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX2067228.1"
                     /translation="MNSNIYKIMIFSHAMLQRSKLKIVLSIIFVFATINVLLISQHPV
                     MAQQQQQNSTAVDMVSAKDNESSLSLNSIFKQVENSVVQITRKVPPSSILPPGPESEN
                     ATTLGSGFVYDNKGRIITNNHVVGDAKIVDITLVDGNRYTGNVTGTDIFSDIAVIEIV
                     GENLTEQSSSSPPPLRPLLIGNSSELEVGEQVIAIGNPFGLAGTMTTGIISQTGRLLP
                     DQQTGFSIPNAIQTDTLINPGNSGGPLLNMNGQVIGMNTAGLFGSGIGFAIPSNAITR
                     IVPALIEKGNYTHPWLGFTAATLTSDLAESVEGLERNFKGVLVDSIVKDGPADKAGIQ
                     GRITDQYGEKHGGDIITAVDGRIVIQNEDLISYIEENKEVGDKITLTIYRNGQFLDLE
                     MTIQERPSPLLYLTEVPSPVP"
     gene            4327..5892
                     /locus_tag="VHF08_00840"
     CDS             4327..5892
                     /locus_tag="VHF08_00840"
                     /inference="COORDINATES: protein motif:HMM:NF013591.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family metallopeptidase"
                     /protein_id="HEX2067229.1"
                     /translation="MDLKQWCEIDERIYIADADERYKQYAGFEYSEAVIEQLANMKLR
                     NAQIFLSSFLEPRELYLNAIESIADSKTKKLELKLHNLKNKKIISSKYRFDKFPVNWS
                     TWRQFNSIEKDAVKRKHVFDEFIAKTKYIAPTIERRFSVIKEVYSQYGGRTISRRLKD
                     HIDNNNGGSSSKRSSRGDSYGDQPSKISKTKMSPLDGYLENEKISYSQLIQFVKSMGQ
                     QAKKPFREALTNISEKVLGREAEYYDDFYFFRNKVYFDMEKNFSGIDPILEVKKTLEL
                     IQFDLSKINFDVVNRKNKYPSPICFFIQVPNDIRVLYKTESPYFDLQGCFHETGHAMH
                     ATSIDPSLEYWNRYSFSMGIAEIFSILLERLTKNSNYLESVLEIKDENILNELASRNN
                     FMELFFVTFYTANSLMKAEYWRKNLSIEDANVLYSKLIKEYTGFEMPGEYWMLHHILP
                     DAIMYVPSYLLAAVRAKELDIYLQNKFGEKWWMNEKAGKHLREIMKSGAKIELERFSK
                     LDSSLFIKEIIGI"
BASE COUNT         2068 a          999 c         1065 g         2224 t
ORIGIN      
        1 ctaataggac gtgtgtatga taatagaata actactagta atcgtatgta aaactcaaaa
       61 aacagccaga tctaatatag tttattcgtt ataagcagtt ttataatcct gataaaggat
      121 ctgctttatg ttttcagaca gatcgataat ttcttgctta tcgtttagct catttgtttt
      181 ttttggaact attcctaatg agttcaactc gttcagccac catccatatc ggtcggaaga
      241 ttcttttcta gtaaacatag ttatttaata ttattcgcaa tattgtattt aatggatcga
      301 gaaaaaagat ttgtacgcga ttcacttaaa caatagtaaa tttagcttcg ggtatagtag
      361 gcatcgatag agtataaata catacagtct ttaatattgg caccacagaa tttttatata
      421 aattgttgga ttggatataa ataacaatag ttggcaagat gtcatcatta attgttgcta
      481 ttgatataag atatttttag tcacgaaatt gaatgaagca aaagagattc aaaggccaaa
      541 aagaatgctg aacgagaaaa agtatgatca agtctgtcaa atctagttaa gaaagacaaa
      601 tactacgcca tcctttgaaa acaagcaata aataagacaa taagataata aaaaataatt
      661 agattgatag tatagtttta ggatataatt agtattttta tgacaatttc ttgtattaga
      721 aataatcaat atacaaagga gtcatgtagt taggacagtt gagtaaagaa caatgtccta
      781 atctgcaatg atagtcaata gttatacgaa taaaaaaaag gctgttatat attctataat
      841 tcaagtatta ttattattct gatgtgcttt ctttggaaat tttcttatta tgcttggatt
      901 tttttggcga ttgggatctc ttttttgatt cctcgttctc atcagtagca attacgcctg
      961 gttgtatttc agcagatgga atttctgtag agatatcaac atcttgagaa gacttttgta
     1021 tagctgctgt ttgttctgta ggttcgtcag ccattataaa accttcagag ccttttatct
     1081 gctcttgact aaccatttct tctggtagtt gtggttgttg ctgtccttgt agttcgggtg
     1141 cttgaaggtt tttgggtaac ttgtctatat cttctgatcc acctaacact actactggct
     1201 tccgtacaga agcttttaat ctagtagcta gatcttttct agctaatatt aattcacgct
     1261 gttggtctat taacttgaga aatccaagat agatttgttc ttgttctgca tatgtccttg
     1321 ttctaatctc agatagaaca tcctcaaatg aatttgtaaa ttgtgttgca agttcaccca
     1381 ttttagatat attttctgca tctctctctg cctgtctttc ttcttcagct tctcggagtt
     1441 ctttgacctt tctctcagtt attttagcgg cgcttgatat aatatctttg agatcagaag
     1501 ctgcatgttt tacctttttg acaatttctg attcatcgta atgataactt tctggttttg
     1561 atacacgaac ggttgttgtt gcaggtcttg ggctatttgc gagttgttga ctttctttta
     1621 tcattgcatc tgctgttgta gtctgaatat tgatctcttc tttgtcttgt ttttctttta
     1681 gttcttcttc tacctttgtt tctttagggg tatgaaatat ctcctttgct gatggtctta
     1741 aacttttgtc ttcaggcaag ggagcctctc catcaacttt atattgcaat aaagatacat
     1801 cactatgatt tagaacaact gatccgccgt ctactgtgat ttttgacttt ggaatatcaa
     1861 atctggaatt atctgaatcg ctgaaaacta caattgagct gtcagtttcc tttgttacat
     1921 gaccaatcag agtctgttta tcatttgaaa acaccgattt gttaaaaaga tcttttggat
     1981 acctgccttc aaagctagcc aattctccat caatattagg ttgctttgct aaattttcaa
     2041 atttcgcaat attttctgta gccaattgtt cttcagtccc tacctgtttt gaatctatga
     2101 gatcttgcgc ttctagaact tttttctctg ctgctttagc tccagagcct aaagatttgc
     2161 taatcacatt agctactttc ttggcagttt tttccagcgt atttatagaa tcatcatgtg
     2221 tatcgtcatc aatcttagca taagatagag atgaatcatt tttgtcttct tccatactat
     2281 tagaatgagc atgctagcat aaaaataatt ggttgatatg aaataataac aataatacaa
     2341 atctacatca aggattaacc agttatcaag atttaacttg ggttctgatg atatgtaaat
     2401 ctgcatagat accatacttt ccaggagaaa ttaaagtaag aggtagttat agtatccctt
     2461 ttgctgttga aattaattat aatattgcaa attatatata ttgctcctac tagggaggta
     2521 atttatttaa gaccttatgt atagtgttat agagaatcaa acaatcctaa tattactcgt
     2581 gctagtgcag atataatgca atcaagcctc aagctcaaaa attactgcta acgttacagc
     2641 atttgcactg acgttcctga agagatggat tctctttaat gttatgttga catttatcta
     2701 attcttatct gatcattaaa taatccaact ctgaaataaa acaaaatatt tatccagtcc
     2761 atgacgaaaa aatacaaaga ctattattac tatcttattg ctatcgtatt tttacatttc
     2821 tatagtttgg tattgatgct atattatagt tctagaaaat attactttta tgattcacaa
     2881 tattagtata tcaatattaa aaagaaatta tgggactgga gaaggcactt ctgtcaaata
     2941 tagaagtgga gaaggacgtt cttggatggt catctctaaa tctaggaact gtccattcct
     3001 atatatagtc aaggttattt tatcaccgac ttctttattt tcttctatgt aggatatgag
     3061 atcttcattc tgaatgacaa tacgcccgtc aactgctgtg attatatctc caccatgttt
     3121 ttcaccatat tgatctgtaa tacggccttg tatacctgct ttatcagcag ggccatcctt
     3181 tacaattgaa tctactaata ctcctttgaa atttctttct aaaccttcaa cactctcggc
     3241 taaatccgaa gttaaagtgg cagcagtaaa tccaagccat ggatgagtat aatttccctt
     3301 ttcaattaat gcaggaacta tgcgtgttat ggcattagat ggaatagcaa atcctatacc
     3361 tgaaccaaat aatccagcgg tgttcattcc aataacttgt ccattcatat ttagcaatgg
     3421 tccaccagaa tttccaggat tgattaaagt atcggtctga attgcatttg gtatggaaaa
     3481 tcctgtctgt tggtctggta atagccggcc tgtttggctt attataccag tagtcattgt
     3541 acctgctaga ccaaacggat taccaatagc tataacctgt tctccaactt caagttcaga
     3601 agagtttcca attaaaagag gtctaagagg aggaggagaa gaagaagatt gctcagtaag
     3661 attctcccca acaatctcaa taactgctat atcactaaaa atatcagttc ctgttacatt
     3721 cccagtatat ctatttccat ctactaatgt tatatcaact attttagcat cacctactac
     3781 atggttgtta gtaattatgc gtcctttatt atcataaaca aatccagagc ctaatgtagt
     3841 agcattttct gattctggac ctggtggtaa tatgctgcta ggtggaactt tccttgttat
     3901 ctgaactaca gagttctcta cctgtttgaa tatgctatta agagaaagag aagattcatt
     3961 atcctttgcc gataccatat caacagctgt ggagttttgt tgttgttgtt gtgccataac
     4021 aggatgttga gatattaata atacattaat tgttgcaaat acgaatatta tagataatac
     4081 tattttcagt tttgatctct gtaacatggc atgactaaat atcataatct tatagatgtt
     4141 actattcata atgttatagt tacaggcatt actatttttt cttgtttttt aagctcaata
     4201 aatttttaca attttgatat ttcaagagat actaatcagt atgtgcaaga ttactctagc
     4261 atgtgcgtat gtgtgtttta aagcttaaaa tttggctaac tgatcataac cattcgtttc
     4321 tattaaatgg atttaaagca atggtgtgaa attgatgagc gtatatacat cgcagacgcc
     4381 gacgaacgtt ataaacaata tgctggtttt gagtatagcg aagcagtaat agaacaactc
     4441 gctaatatga aattgcgtaa tgcccagatc tttttgagtt catttttaga acctagagaa
     4501 ctttatctta atgcaataga aagtattgca gattcaaaga cgaaaaaact tgaactcaag
     4561 ttacataatt taaaaaataa aaaaattatt tcttcgaaat acaggtttga caagttccct
     4621 gttaattgga gtacatggcg acaattcaat agcattgaga aagatgcagt gaaacgtaag
     4681 catgtattcg atgaatttat tgcaaaaaca aaatatattg caccaactat agaaaggcga
     4741 ttttctgtta taaaggaggt atattctcaa tatggaggaa ggaccatcag cagaagacta
     4801 aaagatcata ttgataataa taatggtggt agtagtagta aaaggagcag cagaggagat
     4861 agttatggcg accaacctag taaaatcagt aaaacaaaaa tgagtcctct tgatggatat
     4921 ttagaaaatg aaaaaatatc atattcacaa ttaatccaat ttgtaaaatc gatgggtcag
     4981 caagcaaaga aaccttttag agaggcactt accaatattt ctgaaaaggt tctgggaaga
     5041 gaagcagaat attatgacga cttttacttt ttccgtaata aggtttattt cgacatggaa
     5101 aagaattttt caggaattga tcctattcta gaggtaaaaa agacactaga gttaattcaa
     5161 tttgatttat ctaaaattaa ttttgatgta gttaacagaa agaacaaata cccatctcct
     5221 atctgtttct tcatccaagt gccaaacgat attcgtgtgt tatataaaac tgaaagtcca
     5281 tattttgatc ttcaaggatg tttccatgaa acaggtcatg ctatgcatgc aacctcaatt
     5341 gatccatcac tagaatactg gaacagatac agtttttcaa tgggtattgc agagatattt
     5401 tcaatccttt tagagagatt gacaaaaaat agtaactatt tagaatctgt ccttgagatc
     5461 aaggatgaaa atatcctcaa tgaattagcg agtcgtaaca actttatgga actttttttt
     5521 gttacgttct atactgcaaa ttcgttgatg aaagcagaat actggcgcaa aaatctttca
     5581 atagaagacg caaatgtact ttattctaaa ttgattaaag aatatacagg atttgaaatg
     5641 ccaggtgaat attggatgct tcatcacatt cttccagatg caataatgta tgttccgagt
     5701 tacttacttg cagccgtccg tgctaaagaa ttagacattt atctgcaaaa taaatttggt
     5761 gaaaaatggt ggatgaatga gaaagcagga aagcatttgc gggagattat gaaatctggt
     5821 gcaaaaatag aactggaaag attttctaaa ttggatagta gcttatttat taaagaaata
     5881 atcggcatat gatacaactt tttatgataa tctttcgttg tgtttgtcat gattataatg
     5941 tgtagaaaat tgttattcat gatgcaaacg caacttttcg tagataaaaa ttagaggttt
     6001 aataaactaa cgtactttaa cgtataaaat gtcaattaat taaaattaat agtattaaat
     6061 ccatcatagc ataatttatc gttaagaatg aatatacagc tagttaaata ataataatca
     6121 tcatcgttaa agttactgaa tatactttca acaaaatata aatagaagat tataatgcat
     6181 tttattatta actacaacat taagctgtct ttattaagat agatattatt attctcatct
     6241 ggattatcag tactacaata tgtcttctcc tctaatccgg cttaaaatga tctcagatag
     6301 catctattgt acaacaataa gagcaagatt agagaaaggg gtggaggagg agtagt
//
LOCUS       DATAAS010000055         1854 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_48455, whole genome shotgun sequence.
ACCESSION   DATAAS010000055 DATAAS010000000
VERSION     DATAAS010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1854
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_48455"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            544..1161
                     /locus_tag="VHF08_00845"
     CDS             544..1161
                     /locus_tag="VHF08_00845"
                     /inference="COORDINATES: protein motif:HMM:NF017758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HEX2067230.1"
                     /translation="MVQNKTRKSKQTEKRRGRKKVSSTKRKEITLSEKITLYLNEALS
                     MENASVERLQLRIKQTKIENVKQRLRLHLEETREQQNRLKQLISDVGGKNPTREKAGL
                     PIPWATKTMANMIRRMMTSAELELKAAKEDAVIENAEIVHYDMLMQLVERMGITNAIS
                     VLSQSLSEEKAMAEWIRANAPDVLMQLWPEIDASIAKRELQSVDT"
     gene            complement(1376..1579)
                     /locus_tag="VHF08_00850"
     CDS             complement(1376..1579)
                     /locus_tag="VHF08_00850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="C2H2-type zinc finger protein"
                     /protein_id="HEX2067231.1"
                     /translation="MSENTKKKDVAPSRSEDEKPHLNDYLSKDKELTSDRKNGHICDD
                     CGKSFSTMEELTSHYRKDHPEAL"
BASE COUNT          680 a          256 c          349 g          569 t
ORIGIN      
        1 gttttgaaat tttttatcaa aatagtttta ataactttga ctatgacttt tcctgctgat
       61 attatgagta tctatccaac gatgatatct agaaagtcaa atgatttgca aagattgtaa
      121 atggttttgg aatgtcatgc aatatttatt ttctaatatt attagaatag tctatgattt
      181 ataagaaatt attgggatga tgtaacatat cacgtgtaca aatttatttc tctcgaagac
      241 atatggaagc cattacaata ttgcattggt tttgtactgg tattaatttt tggaaatgta
      301 ttgggaatgg gaaagataaa agaaagagaa cattggcaat aaatgcagtg atagtacaag
      361 cagtcctatt gatgtaaaaa cagataatgc attctgaaaa gagcagactt atttttctaa
      421 agctgaaaat gattcaatgt attataattt aatattagca agttatctga gtcttttggg
      481 aaaaagagta gctaactgtt aaaagcaatt aattacaagt taagaagacg agatcgataa
      541 ataatggttc agaataaaac aagaaagagt aaacaaactg aaaaaagaag aggaagaaag
      601 aaggtatcct caacaaaaag aaaagaaatt actctaagcg agaagataac cttgtactta
      661 aatgaggcct tatctatgga aaatgcatca gtagaaaggt tgcaattgcg aataaagcag
      721 actaaaattg aaaatgtaaa acaaagactt cgactccatt tagaagagac aagagagcaa
      781 cagaacagat taaagcaatt gatctcagat gtgggtggaa aaaatcctac aagagaaaag
      841 gcaggattgc caataccttg ggctactaaa acaatggcca atatgattag aagaatgatg
      901 acttctgcgg agttagagct aaaggcagct aaagaggacg cagtaataga aaatgccgaa
      961 attgttcatt atgacatgct aatgcagtta gtagaaagaa tgggtataac taatgcaata
     1021 tctgttctat cgcaaagctt atctgaagaa aaagctatgg ctgagtggat cagagcaaac
     1081 gccccggatg tgcttatgca actatggcct gaaattgatg cttctattgc taaacgtgaa
     1141 ttacagagtg tagatacatg ataatggaaa tagtattatt ataaagtaat atttgatatc
     1201 caagagttct taagaaacaa gagggtactc tgccatctct acttttgctt gtttcagtca
     1261 tcaacctgag actcgtctga agtttttgga ttacgttctt acgatcaaat ttttagataa
     1321 aaaactgagt atgataatga tatttcaatc attattcgaa gcaaggaaat atgtattaga
     1381 gtgcttcagg atgatccttc ctataatgac tagtaagctc ttccatggta gagaatgatt
     1441 taccacaatc gtcacaaata tgaccattct ttcgatcaga tgttaattct ttgtctttac
     1501 tcaaatagtc gtttagatga ggtttttcat cttcactcct acttggcgct acatcttttt
     1561 tctttgtgtt ctccgacatg aataagatta tacaatattg ttttttacag tttacctcga
     1621 gaagggcgga gagtcataga tatggttcaa agacaaaaga cttggaatgt taatatatat
     1681 agtaatatat acctggtaaa gctaccagag ccaattctaa aacattacaa aacaatcata
     1741 aatattgttt ttggtttcat tatatacata tgaagattaa tcgtgcagtc ctaggagatg
     1801 ccgaaacaat tcttcaaatt cagaagtgtg cttatctaag tgaggctgaa atct
//
LOCUS       DATAAS010000056         2325 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4911420, whole genome shotgun sequence.
ACCESSION   DATAAS010000056 DATAAS010000000
VERSION     DATAAS010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2325)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2325)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2325
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4911420"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(232..306)
                     /locus_tag="VHF08_00855"
     tRNA            complement(232..306)
                     /locus_tag="VHF08_00855"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(268..270),aa:Gly,seq:gcc)
     gene            626..1588
                     /locus_tag="VHF08_00860"
     CDS             626..1588
                     /locus_tag="VHF08_00860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NOL1/NOP2/sun family putative RNA methylase"
                     /protein_id="HEX2067232.1"
                     /translation="MKTLVFPNSSISSSFARQYGYNEWLISRFLQFVPDVKGLIEKME
                     MKPTLYIRSNTLKIKTKDLKERLVSKGFELEDTILDDVLAVKKETFRTGATTEYLLGY
                     YYIQDLSSCLAVDALDVRENQTVLDMASAPGGKTTYISQKMKNTGILVALETNARRIR
                     ALLFNLRRCGVINTCIFKMDGNKAMDLNMRFDRVILDAPCSCEGIIAKDKERKTNHKP
                     EDIEFCAARQSSLIETAVRVVKPGGLLVYSTCSFAPEENEIIVNLILEKLKNIEIEPI
                     SYGSEGLTNFGELHFNPVLKNTRRFYPHIHDTLGFYIAKLRLAN"
     gene            1594..2115
                     /locus_tag="VHF08_00865"
     CDS             1594..2115
                     /locus_tag="VHF08_00865"
                     /inference="COORDINATES: protein motif:HMM:NF015610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NIP7 N-terminal domain-related protein"
                     /protein_id="HEX2067233.1"
                     /translation="MYRILTRKELTTLKRAFDKWGVFDFFKDKSILIKEIKNHNIREV
                     YFLSNEIEKIALLKQPSYAGLMIGQLKKQFSLSIEGANLVSKMSKQFPYIIVNEAAEK
                     SILYGKNVYSRSIISTSKMIDENEVAIILNQKREAIAIGKTRFADTLLLQDDKVAATT
                     IIDAGSYLRSEEK"
BASE COUNT          805 a          347 c          455 g          718 t
ORIGIN      
        1 gcatgcggtg gtcaagggga gtaggttgtg tagatgattt aacattgcgc tgtaccaagt
       61 accatgacga tgagaagaaa gaaaaacaaa aaccgaaaaa gttagaaata ttactattat
      121 tagggtaatt gtcttttttt ccatataata gttaatttta ctattactca aaatcttaag
      181 agataatttc aactacaaat ggtaaatctt caggttcata gacaggacaa atgcgacggc
      241 cgggatttga acccgggtta ccagattggc aatctgatgt cctagaccaa actggacgac
      301 cgtcgcatta ttagccccat caactagtat agggcattgt catggtctta tttttgcttt
      361 aataaactct tcgaggagct tgtcatatgg tcaataaagg tggtggtgaa tcaggacaac
      421 tgttcatagt cttgtgtaaa acaattagat tgtgccatgg cattggcatg cttatatata
      481 atatataaaa agcatttgtt attctggtat gccctacaca taaagaaggt gtctaaatat
      541 ctctaccttt ggtgtcatat ctaaatccca taaatatgtc cattaaaaaa caataatatc
      601 ttgcttagta aaataggcat gttatttgaa aacacttgta tttccaaatt cgtcaatatc
      661 gtctagcttt gccaggcagt acggttataa tgaatggtta ataagcagat ttcttcaatt
      721 cgtgcctgat gtgaagggtc ttatagagaa gatggagatg aagcccacct tgtatattag
      781 gagtaatacg ttgaaaatta aaactaagga tctaaaggaa agactcgtat ctaaaggctt
      841 tgaattagaa gatacaatac tagatgatgt tttagctgtt aaaaaagaaa cttttagaac
      901 aggggcaacc acagaatatt tacttggtta ttattatata caggatctca gctcctgctt
      961 agcagtagat gccttggatg tcagagaaaa tcaaactgtt ttagatatgg cttctgctcc
     1021 aggtggaaag acaacttata tatctcagaa aatgaaaaat actggcattc ttgttgcatt
     1081 ggaaaccaat gctagaagaa taagagcctt actatttaat ctcaggcgtt gtggtgtaat
     1141 taatacttgt atctttaaga tggatggtaa taaagcgatg gatctgaaca tgcggtttga
     1201 ccgtgtgata ctggatgcgc catgcagttg cgaaggtatc attgcaaagg ataaagagcg
     1261 aaaaacaaac cataaaccag aagacataga gttttgtgca gctcgtcagt catcgttgat
     1321 agaaacggcc gttagagtag tcaaaccagg tggattacta gtatattcaa cttgttcttt
     1381 tgctccagaa gaaaatgaaa ttattgtaaa tcttatttta gagaagctga agaatattga
     1441 aatagagcca ataagttatg gaagtgaggg tttgacaaat tttggagaac ttcattttaa
     1501 tcccgtattg aagaacacga gacgatttta tccacatatt catgatactt taggattcta
     1561 cattgcaaaa ttgcgtcttg cgaattagac caaatgtaca gaatactcac aagaaaagag
     1621 ctaacaacat tgaaaagagc atttgacaaa tggggagttt ttgatttttt taaagataaa
     1681 tctatcctga taaaggaaat aaaaaatcac aatattcgtg aagtttactt tttgtcaaat
     1741 gagatagaaa agatagcctt gttgaagcag ccatcatatg ctgggttaat gataggtcaa
     1801 ttaaaaaaac aattttcact ctcaatagaa ggggcgaacc ttgtttctaa aatgtctaaa
     1861 cagtttccat atattattgt taacgaagcg gcggaaaaat ctattctata tggaaaaaac
     1921 gtttacagta ggtctattat atcgacttcg aagatgatag atgaaaatga agtagcgatt
     1981 attttaaacc agaaaagaga agcgatagct attggcaaaa ccagatttgc agatactctt
     2041 ttattgcaag atgacaaagt tgcagctact actattattg acgctggctc gtatttacgg
     2101 agcgaagaaa aatagagagt aaaaaatcaa tgtaataatc tgcataataa tctttgataa
     2161 aaaaagagca atttatgtta gttcacgaat tggattttat tctcataatc ttatgcaatc
     2221 tatgcttttg cttcaagact tcgttgactg ttttcaatat cttcttctat ttttctatag
     2281 catacaaaca atggagttag gttaagatgt tgctgaactt tggtc
//
LOCUS       DATAAS010000057         2866 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1671385, whole genome shotgun sequence.
ACCESSION   DATAAS010000057 DATAAS010000000
VERSION     DATAAS010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2866)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2866)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2866
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1671385"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            87..287
                     /locus_tag="VHF08_00870"
     CDS             87..287
                     /locus_tag="VHF08_00870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067234.1"
                     /translation="MILSSVNASQPDLVIMGKRVGKFNVFDNQHFVSMLDGLNCPAIV
                     ARSFIIPGVSRIKAALLRAIHR"
     gene            786..1796
                     /locus_tag="VHF08_00875"
     CDS             786..1796
                     /locus_tag="VHF08_00875"
                     /inference="COORDINATES: protein motif:HMM:NF016289.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEX2067235.1"
                     /translation="MSNATIGIAAANKNEDADNDYTLCLFNFINCVKDSSMQKIEESE
                     EADELSISSVIDQVNYTKLRKWVDVLSSFHTRHTKSAYIEDAAYWLKDELQGICKARV
                     YFHNFTQTDQGTDYHLKNIVCDKKGLESDNLIIISAHYDSRMQDINNTNGRAPGADDN
                     ASGVSAILELARILSQIDLKNNIQFVLFSGEEQGQWGSKNYVKYLLDNNRKIDLQINA
                     DMIGYPPPGSNKVNLEYDWGNKVTTNDMSSYIVGIFMKQIALEYTKLNTTLTVLSGNS
                     DYRPFEAYGYTVIGVHDGGVEQNPNYHSTSDTPDTLDFKYLSSITKLLLATILELDEL
                     SP"
     gene            2022..2465
                     /locus_tag="VHF08_00880"
     CDS             2022..2465
                     /locus_tag="VHF08_00880"
                     /inference="COORDINATES: protein motif:HMM:TIGR03618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HEX2067236.1"
                     /translation="MSNREIKKFLMQGTLTGKLATVKKDGSSHVVPIWFTIDNSNSSR
                     KGDIIFTTASTSLKARNIQRDNRVSMCVDDQMPPYSFVTVYGIAEIKKYKQNDLFKWA
                     TIIAERYMGKRNAKAYGKRNSTEGEVVVRVKPTKIIAEKNIAGWD"
BASE COUNT         1053 a          428 c          533 g          852 t
ORIGIN      
        1 tgcagtattt ggagcagatt ggcgtggagt tccatgaagt ttttgtatca taaaagacac
       61 aaaacaatag tgaaaagttt gcaaagttga ttttatcgtc agttaatgct tctcagccag
      121 atctcgtaat aatgggtaaa agagttggta aatttaatgt atttgataat caacattttg
      181 tctccatgtt agatggcctt aactgcccag ctattgttgc aagaagtttt atcattccag
      241 gtgtaagtcg gataaaagcc gctctactga gggctattca tagataagaa aggtaatttt
      301 attgtcttaa aaaagaattg atagatcaca aactataaaa tcaatccgct aaaagctgat
      361 tttgatatat aagtagcaat gtctagtgag actcccttat tgcatggata gtttgtccta
      421 gtcctatcac agctgctata gccagactta attaaaaagg aaaataatac aaatagtaat
      481 gtcgatatgc tatacaacga ctcctgtaag acataaacaa tgtagacaag catgaaagcc
      541 tttggcacaa ggacattgtc aatcacgcat aaagagacag aaaagagtat aaatttgaaa
      601 tgcagagaca gaactctgaa tctgatcctt cagatatata taattttcca gatggctgat
      661 aaggatctgt tcatgttatt gattaatata atatctaaat atacatattc atgtagttga
      721 aaaaagtatg tattaaacta tcagggttat tgatattatc aatattaatc acaatctttg
      781 ctaccttgtc aaatgctaca attggaattg ctgccgctaa taaaaatgaa gatgcagata
      841 atgactatac cttatgtctt tttaatttca ttaattgtgt gaaagattcg tcaatgcaga
      901 aaatagaaga atcagaagaa gccgatgaac tctccataag ttcagtgata gatcaagtta
      961 actatactaa acttagaaaa tgggtagatg ttctatcatc ttttcatact agacatacca
     1021 aatcagcgta tattgaagac gctgcgtatt ggctcaaaga tgagctccaa ggtatatgca
     1081 aagctagggt ttactttcac aattttactc aaacggacca aggaacagat tatcatttga
     1141 aaaatatcgt ttgtgataag aagggtttag aatcagacaa ccttatcata atttcagcac
     1201 actatgatag tagaatgcaa gatattaata ataccaatgg ccgagctcca ggagctgatg
     1261 acaatgccag tggtgtatct gcgatccttg aactggcacg aatcctttct caaattgatt
     1321 tgaaaaataa cattcaattt gtgttattct caggagagga acaaggtcaa tggggatcaa
     1381 aaaactatgt aaaataccta cttgataaca acagaaagat agatctacaa atcaacgcag
     1441 atatgattgg ctatcctccc ccaggatcaa ataaagtcaa cttagagtac gattggggaa
     1501 acaaggttac aacaaatgat atgtcttcat atattgttgg aatattcatg aaacagattg
     1561 ccttagagta tacaaaacta aatactacac tgactgttct tagtggtaat agtgattacc
     1621 gtccttttga agcttatggt tatacagtta taggagtgca tgatggaggg gtagaacaaa
     1681 atcctaatta tcacagtaca tctgatactc cagatactct tgattttaaa tatttgagtt
     1741 caataacaaa gctgttattg gccacaattt tagaattgga tgaattgagt ccgtagtcaa
     1801 aatcgctgtt acaatgagag taacattatt cctacgaaaa gtaaaaatca tctatagttt
     1861 taaggtactt tttaatcata atatcaaact tatgaataat aactgttaat aaaacaaata
     1921 acatacctcg accttgcaat gaaaccgata ttctaaatag aaaaattaaa caaatgatca
     1981 tattttaagg atcagcataa gaaataataa taatgacaga aatgtctaac agagaaatta
     2041 agaagtttct tatgcaaggg accttaacag gaaaacttgc tacagtaaaa aaggatggaa
     2101 gttcccatgt tgttccaata tggttcacaa tagacaacag taatagcagt agaaagggag
     2161 atatcatttt tactacagcc agtacgtcac tcaaagcaag aaatattcaa cgtgataata
     2221 gagtaagtat gtgtgttgat gatcaaatgc cgccatattc ctttgtaaca gtatatggca
     2281 ttgcagaaat aaagaagtac aaacaaaatg atctctttaa gtgggcaaca ataatagcag
     2341 aacgatatat gggaaaaagg aatgcaaaag cctacggtaa aagaaacagt actgaaggcg
     2401 aagtggttgt acgagtaaag ccgacaaaaa ttattgcaga aaaaaatata gctggttggg
     2461 attgatgatt aatttataga ggtaggggga aattttatcg atactgctaa taagtatgct
     2521 gaaggcacaa gtgagaaata tattggtgaa tttatttctc ctgacggaga acaatttgtt
     2581 ttagcaacta aatacgcatc gaatatgcgt aggggagatt ctaacgctgg tggaaatgat
     2641 cgtaagagtt tagttcaatc ttgggaggag gcctaaaaag gctaaataca gattatatag
     2701 acttgtactg ggttcatgca taagatccat gaaatctgtc gagttcttta aatattattt
     2761 ttctcatatg ttgaatgaag atgatgtttt agcttcaaaa ttttacatgc ttgtgatgga
     2821 taccaacaac aataactata tctgttgaaa ctctatgctt tccgtt
//
LOCUS       DATAAS010000058         2721 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2209858, whole genome shotgun sequence.
ACCESSION   DATAAS010000058 DATAAS010000000
VERSION     DATAAS010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2721
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2209858"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(441..1595)
                     /gene="hflX"
                     /locus_tag="VHF08_00885"
     CDS             complement(441..1595)
                     /gene="hflX"
                     /locus_tag="VHF08_00885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEX2067237.1"
                     /translation="MLNSNKTALLITYPIEEVTKEAISLADAARYSIIKIVNQRNLTQ
                     SKYGIGRGKAEEVKELVEQLKPDVIIFDEVLKPSQQYNLAKVCKIDILDRERLILEIF
                     ELRASTAESRIQIKLAQLRYDMVRAREKVRLARAGEQPGFFGMGKYDADVYYLDIKKR
                     SAILKKKLEREETRRELFRIQRSRAGLPTISIAGYTSAGKTTLFNTLTGESKMEGKEV
                     FTTLSTFTRAISLKNDQKLLISDTVGFISKLPAYMIDAFKSTLQDITYSDLVLLVVDI
                     SQPIEEIKKKLDSSIHIMNELKVPMTKVLYVMNKVDMTNLENAYDKCDKLGFFPFGPY
                     VVLVSAKTYFNIDKLKDSIALRIFSKDTKKESTEIMSEIGDGKTRNNINS"
     gene            complement(1748..2209)
                     /locus_tag="VHF08_00890"
     CDS             complement(1748..2209)
                     /locus_tag="VHF08_00890"
                     /inference="COORDINATES: protein motif:HMM:NF016098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067238.1"
                     /translation="MSSEIINPKISIKTKSELIDQVFDAISKSGENGIFQTELCKVFS
                     LDSRDGSRLVGNLEKQSLISREKILHNGRWTYKLVVKKSSMVAELAKKPIELANIEGA
                     PCFSCNYQHLCSSDDETSQYSPAKCMWIEEWVLMGFSRMLTSQEGSQSKEL"
BASE COUNT          865 a          469 c          398 g          989 t
ORIGIN      
        1 ttgtgcgggt cgtgtgacca ttgtcagatt caataatctc agtatcgaat ctccatgtta
       61 tgagcgcaac tggaggtcgg agaatcacaa aatggcacta ggaccacaat catcccgacg
      121 ccgcctttaa ttgttacgtt cggatctacc cctttacatt attcacatat taagatttgc
      181 attaaaagaa aatcattatg ctcttgttgg ctcttagatt cacatggata tggtgcattt
      241 gtattctcat caatgaatgg aatggattta cttcaattat atgataatat tcagggttac
      301 gactcatgtt gacagaaata ggtgaattgt tatagcatta tgaaaggaga tatttaattg
      361 acaagacagc aacatctaac actgatatat atacaaaatt aaaacgacac aattaagcca
      421 aaatattgta tgtgattata ctacgaatta atattatttc tagttttacc atcaccaatc
      481 tcactcataa tttctgtcga ttccttcttt gtatccttcg aaaatattcg taatgctatt
      541 gaatccttta gtttatctat attaaaatat gtctttgcag acactaatac aacatacggt
      601 ccaaaaggaa aaaagcccag tttatcacat ttatcatatg cattttcaag attagtcata
      661 tcgaccttat tcatcacata caagacttta gtcataggta cttttaattc attcattatg
      721 tgaattgaac tatctagttt cttcttaatc tcttctattg gctgactgat atcaactaca
      781 agcaaaacaa gatcagaata agttatatcc tgaagtgttg atttaaatgc atcaatcata
      841 taagctggga gtttactaat aaagcctaca gtatctgaaa ttaagagctt ttgatcattt
      901 ttcaaactaa ttgctcgagt aaaggtagat agagtagtaa atacctcctt tccttccatt
      961 ttagattccc ctgtcaaagt gttaaataga gtagtctttc ctgcagaggt atagccagca
     1021 atagaaatgg taggcaaacc tgctcttgat cgttgaatac gaaaaagttc tcttctcgtc
     1081 tcttctcttt ctaatttttt cttcaagata gcggatcgtt tcttgatatc tagataatag
     1141 acatcagcat catattttcc cataccaaaa aatcctggct gctctcctgc tcttgcgagt
     1201 ctaacttttt ctcgagctct aaccatatcg tatcgtaact gtgcaagttt aatctgaatt
     1261 cttgattccg cagtgcttgc tcttaattca aagatctcta gaattaagcg ctctctatct
     1321 agtatgtcta tcttacatac ttttgctaaa ttatattgtt gacttggctt taacacctca
     1381 tcaaaaataa ttacatctgg ttttaattgt tcaactaatt cctttacttc ttctgctttc
     1441 ccacgaccta taccatattt tgactgtgta agattacgct ggtttactat tttaataata
     1501 gaatatctag cagcgtctgc taaagaaatc gcttcttttg ttacctcttc tataggatag
     1561 gtgattagca gagctgtttt atttgaattt agcactattt tttattcctc ttttaataat
     1621 gatattgaac ttataaacaa tttaaatcta aattaagata tctgtaaaaa gagtggtaat
     1681 aaatatagag acacctgtct gtattatttt aataaaacca aagttatagc ataatgtaaa
     1741 tttacaacta taattcttta ctttgagaac cttcttgtga ggtcaacatt ctgctaaaac
     1801 ccattaaaac ccattcttca atccacatgc attttgcagg gctgtattga ctagtttcat
     1861 cgtctgacga gcatagatgt tgataattac aactaaaaca aggagcacct tctatgtttg
     1921 ctagttctat aggctttttg gctaattctg ctaccataga agattttttt acaactaatt
     1981 tatacgtcca tctaccatta tgtaatattt tttcgcgaga tattagtgac tgtttttcta
     2041 gattgcctac taatcttgag ccatctctgc tatcaagaga aaacacttta caaagttcag
     2101 tttgaaatat tccgttttcg ccgcttttgg atattgcgtc aaatacctga tcaatcaact
     2161 cacttttagt tttaattgaa atttttggat taattatttc tgatgacaaa agatatattt
     2221 tattatcatt tattgatata aaagtcttca gattgtataa attattctaa tgcagaggta
     2281 ctgaatgcca ttgccattat tattttaata atacctttaa cattaacaat atccatctaa
     2341 cactgataaa atttaattgg gatcaatagg ctctaagaca ggcatctatt gtgactttct
     2401 ttagagattt ctaatatata taaaaaattg atatatcttg gattacagtc tttaataatt
     2461 aaagtcagag aaatattggc cttgtttata tagttaaaac agcagagatt taaagaatca
     2521 ttaaagtagc gctgactata gaagaaagac gagtcactga agagaatgat attgtaacta
     2581 agcatttcat ttatgaagac tatagttata ctaacgcacc attgttctta ttgtaacagg
     2641 tgtcttttgt tcagttcata ctttttggtt gtctcaaggg tgcagatgat actgaatata
     2701 aaaatctgtt taatatttct c
//
LOCUS       DATAAS010000059         1988 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1673457, whole genome shotgun sequence.
ACCESSION   DATAAS010000059 DATAAS010000000
VERSION     DATAAS010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1988
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1673457"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            81..1553
                     /locus_tag="VHF08_00895"
     CDS             81..1553
                     /locus_tag="VHF08_00895"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HEX2067239.1"
                     /translation="MKKTVTSLKLAVMLLAVNIVISVVSFTTYTNYQQVYAQSIDDDA
                     NSNDDDDDNNNNSLSFIEPINLTNNTRDSVYAQIASHGDNVYMVWQENNPDPLDRNNN
                     VNNNIQYNNNYRNYDIYIKKSTDGGLTFSKEINLSNNPGFSEHPQIAISGNNVYVAWI
                     DDPSSSSSTTKNQEIYFRKSIDGGNTFDKIINLSNSSNADSYNLEITAAGNNVYAVWQ
                     DTTLPTADVDTRSGGINADNNSDRSSISTDETSSILFRASTDDGNTFKKVKSLSNSAF
                     KSYPKIAAFENSAYVVWNVGIIGDGNSEDNNANNINSGIFFTKSFDSGDSFSDTIKLN
                     SNRNSIGESQIAAYENNVYVVWGGNPDDKVVGDIFFVKSTDNGNRFANPVSLGEPNSL
                     NVEIIADGNNNVYIAWQALLSADNVCPSCILKPDDNEEILFKMSSDNGATFTNINENI
                     SKNEGISECTSIAVSENNNVYVAWEDYTYGNHEILFSKNI"
     gene            complement(1792..>1988)
                     /locus_tag="VHF08_00900"
     CDS             complement(1792..>1988)
                     /locus_tag="VHF08_00900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067240.1"
                     /translation="EAIEKERIKSEFKNIRINIIIIILSPIDIIYHLSMITLGTFFTS
                     IGDLKFHTIFRLTINFNDTA"
BASE COUNT          732 a          290 c          350 g          616 t
ORIGIN      
        1 ttgcataata agaatttgtt aaccgagaac aataagaata aaatactata ataaacccgt
       61 cttggataat cacatatatt atgaagaaaa cagttacatc tttaaaatta gcagtaatgt
      121 tacttgcagt caacatagta ataagtgtag tttcatttac gacttataca aattatcaac
      181 aagtttacgc acaaagtatt gatgatgatg ccaatagtaa tgacgacgat gatgacaata
      241 ataataattc attaagtttt atagagccaa ttaatttaac caataatact agagattctg
      301 tttatgcgca aatagcttcc catggagata atgtgtatat ggtgtggcaa gaaaataatc
      361 cagatccttt agatcgtaat aacaatgtca ataataatat acaatacaac aacaactata
      421 gaaactatga catctacata aagaaaagca ctgatggagg attaacattc agcaaggaaa
      481 taaatttgag taataatcca ggtttttctg agcatcctca gatagctatt tctggaaaca
      541 atgtatatgt agcatggatt gatgatcctt cttcttcatc atcaacaaca aaaaatcaag
      601 aaatatattt cagaaaaagc attgatggtg ggaatacttt tgataagatt attaatttaa
      661 gcaacagtag taatgcagac tcatacaatc tagaaataac tgcagcagga aataatgttt
      721 acgcagtatg gcaagacact actctaccaa ctgcagatgt tgacaccaga agtggtggta
      781 ttaatgctga taataatagt gatagaagca gtattagtac cgatgagact agcagcatac
      841 tgtttagggc aagtacagat gatggaaata ccttcaaaaa ggtaaaaagt ctaagcaata
      901 gtgcattcaa gtcttatccg aaaattgctg cttttgaaaa tagcgcttat gtagtatgga
      961 atgttggcat aattggtgat ggtaatagtg aagataacaa tgccaacaat ataaacagcg
     1021 gaatattttt tacaaaaagc tttgatagtg gagatagttt tagtgataca ataaagctaa
     1081 acagcaaccg gaattctatt ggagaatccc aaattgcagc ttatgaaaat aacgtatatg
     1141 ttgtatgggg aggaaaccct gatgacaagg ttgtaggtga tatattcttt gtaaaaagca
     1201 ctgacaatgg aaatagattt gctaatcctg tatcactggg tgaaccgaat tcattaaatg
     1261 tcgaaataat agctgatgga aataataatg tgtatatagc atggcaagct cttctttcag
     1321 cggacaatgt ttgccccagc tgcattttga agccagatga caatgaagaa atacttttca
     1381 aaatgagttc agataacgga gccactttta caaatataaa tgaaaatata agcaagaatg
     1441 aaggcatttc ggaatgtaca tctatagctg tatctgaaaa taacaatgtg tatgttgcct
     1501 gggaagatta tacatatgga aatcatgaaa ttcttttttc caaaaatatc taaaagttgt
     1561 aaggtattgc ccattttcag atttggctgg ctctagttgt aatcactcct gtttctcaga
     1621 tatttgactg aagggcctct gatattatca gataatgttt atctttatct ttatctttat
     1681 ctttacagtc cttgaataag agatagaata attcacagtg tccacatcaa tctcaatctc
     1741 tagattcaaa taagtactag tgaaaagtca aaccaaaaat tcttattctt ctcaagcagt
     1801 atcattaaaa ttgattgtta ggcgaaatat cgtgtggaat ttcagatctc ctatagaagt
     1861 aaaaaatgtt cctaatgtga tcatactaag atgatagatt atatctatag gagacaagat
     1921 gatgatgatg atgttgattc tgatgttttt aaattctgat ttaattcttt ctttctctat
     1981 cgcctctc
//
LOCUS       DATAAS010000060         3225 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_52059, whole genome shotgun sequence.
ACCESSION   DATAAS010000060 DATAAS010000000
VERSION     DATAAS010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3225
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52059"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1222..2394)
                     /locus_tag="VHF08_00905"
     CDS             complement(1222..2394)
                     /locus_tag="VHF08_00905"
                     /inference="COORDINATES: protein motif:HMM:NF014244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M50 family metallopeptidase"
                     /protein_id="HEX2067241.1"
                     /translation="MIHTPFGLKFFDWIARTKAARIYARFNRYLMPVITALAIVLVIG
                     GLMTIISNEPAREASRDLGPRSIFLIPGVNPFLPWHYALISLIITIVIHEAGHGIVAR
                     VYNVKLESTGIVLFFVVPIGAFVNIERNELEKTPLKYTSAILTAGALTNMILAGISLF
                     GLYLVVSTLSPLPISGEEEFGVSIIGVNEGSLAEKIGLTEGSVIQTISGQNIRSIEDL
                     RKILESNLGKTIEITWNDIDNNKKRDYVPLPISIDNNKGILGVTLNNPAPDPKLVLDR
                     YKSFFSTNPLSLLPPPTLAETFVPYSDLMADKYDSNIFGSSYPVVANMLFWIWFINFN
                     VAIFNALPIGPLDGGQWYGSLIASRTKKETGIAINNFITFAMIVVVLMVLVLPYIF"
     gene            2669..>3225
                     /locus_tag="VHF08_00910"
     CDS             2669..>3225
                     /locus_tag="VHF08_00910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067242.1"
                     /translation="MAENEISISDAKKRIAEPPLNMLFNLSLIAKKDVWDIDIPMLLQ
                     MLLSIINNTEKKDLRVCGIAVLSSSMIHRLKVESIFRLEKIATQRKGVEDSRPLEDIP
                     QLHPIELPYRIESTYPVSLEDLLHVLEKMIFELANPIPKKKQIELEPVQTFNFDQYLL
                     KFEQILQEYENMILDIVRADGTAMF"
BASE COUNT         1087 a          552 c          499 g         1087 t
ORIGIN      
        1 tctttgattt tgaatcttga ttatccttcg gtacaaattc atttcttaaa ttttcttttt
       61 tttccacctt tattctttat ccagccctcc agcaatttta tgacccagtt agcaaacaat
      121 ttatccgctt acgaggaata aaaaatcata catcacactg gaaataagcc aatatatatt
      181 aaaagtaatc cattaatata tttttatgta accatatgtc agatttccgc ctattaaaga
      241 ataatttgtc ataccctagt taaaaatgac attagatgaa tcagcaaaat aatagttgct
      301 taaaagtgca ataatattgt tttcaatata ttacaaacat agtatatgct aaagtcataa
      361 gaacgctatt tgtgtctatt gtttttcatt cgctcaatta gaatagatat caaataggtt
      421 aaactgggtt tattttaaga atgctgattt aaacacttat tgtgttaaat agttatataa
      481 taagatattt atcaatagtg gggacgtctc ttgttttgtg ttgattgttt taagaagcat
      541 atactctata catcgtaagc gataaaaaat gagttcttag atcgcacaaa ttcttttgtt
      601 ccattatagt atttctcatg attcgttttt ttgactcaat tttcaatcca ttttctgatt
      661 aattccttcc tttcccattc acatccatcg ttagtcaata tactatcgca tcacaagctg
      721 tatggtgatg gtaaagaaca ctataaagga agtgtgaaag cgtgcaaaag tgtgcagcaa
      781 tacccagtgg tatgatttac taaatgttaa ataataaaat tggattgtct atatccaacc
      841 aataatcgta gatagtaact aaggttttct tttttgctag gacaataatt aaatgtgatc
      901 gtattgaagt ccatagatct cttgccttaa attgactaca tttcttcgaa ttgagaaata
      961 ttatcgacaa atgttttttt gtcttattag gcataatatg gatatatatc ccatgaagga
     1021 aaagccttgt attcttattt tcttctgcct aaggagaata tcatagaaaa attcaatcct
     1081 atgatcttta tattgacgca tattgggaaa atcaaaatgt tacactaata catcgaatca
     1141 aacattcata ttcgattatt ctattttctc cgactacagg ttagaaaagc taaaatgatc
     1201 ttttatatgg actgattgaa tttagaatat atatggtaat accagcacca taaggactac
     1261 tacaatcata gcaaatgtta taaagttgtt aattgctatt cctgtttcct tctttgttct
     1321 gcttgcaatt aaagaaccat accactgacc gccatccaaa ggtccaattg gcagggcatt
     1381 aaatatcgcg acattaaaat taatgaacca tatccaaaac aacatattag cgacaacagg
     1441 gtaagatgaa ccaaatatat tagaatcata tttatcagcc attaaatcag aatatggaac
     1501 aaatgtctct gctaaagtag gcggaggaag caaactgaga ggatttgtac taaagaagct
     1561 tttgtatcta tccagtacca attttgggtc tggagctgga ttgtttagag ttacacctaa
     1621 tattccttta ttattatcaa ttgagattgg caaaggtaca taatctcttt ttttgttgtt
     1681 gtctatatca ttccatgtta tctctattgt ctttccaaga ttagattcaa gtattttcct
     1741 tagatcttca atacttctga tattctgacc tgatatagtc tgtataactg atccttcagt
     1801 taaacctatc ttctctgcaa gtgagccttc atttactcca ataattgata ctccgaattc
     1861 ctcttctcca gaaattggta gaggagatag cgtagagaca acaagataga gaccaaaaag
     1921 ggagatccct gcaagtatca tattagttaa cgctcccgca gtcaaaattg cgcttgtata
     1981 ttttagaggt gttttttcta attcatttcg ctcaatattt acgaatgccc ctatgggaac
     2041 tacaaaaaat aaaactattc ctgtggactc taacttaaca ttataaactc tagctactat
     2101 gccatgtcct gcttcatgga taacaatagt aataataaga gatatcaagg cataatgcca
     2161 aggaagaaat ggattcacgc ctggtataag aaaaattgac ctaggcccca agtcacgact
     2221 agcttctctt gcaggttcat ttgaaattat tgtcatcaat cctcctatta ctaggactat
     2281 agctaacgcg gtgataactg gcattagata tctattgaat cgcgcataga ttcgggcagc
     2341 tttcgttcta gctatccagt caaaaaactt cagaccaaaa ggtgtgtgga tcaaaattaa
     2401 aataggtata aatttgaata tgtacttcac ttccacacga attttattct gctgttccaa
     2461 gcaagttacc tatgtaataa cgctatttaa attaatttgt cgcaccacta taaaaataaa
     2521 aatattgttt ctaaactcag tagcagcatt tctatctggt atgtatgata tttatacgcg
     2581 ctattaaatt agattcttat taagactttc aacattcaat tgttaatttt atatcacacc
     2641 aatatatctc attaatgata actattcaat ggctgaaaat gagatatcaa taagcgatgc
     2701 caaaaagaga attgcagagc ctcccctgaa tatgttattt aatctatctc tcattgcaaa
     2761 gaaagatgta tgggatatcg atattccgat gcttctccag atgctgctaa gtattatcaa
     2821 taacacggaa aaaaaagatc tgagagtttg tggtatcgct gtgttatcat catccatgat
     2881 acatcgccta aaagtagaga gtatttttag actagaaaaa atagctacgc aaagaaaagg
     2941 agtagaagat tctcggcctt tagaagatat accacaactt catcctattg agcttccgta
     3001 tagaatagaa tcaacgtatc ccgtgtcatt ggaagattta ttgcacgttc tagaaaaaat
     3061 gatttttgaa cttgctaatc caataccaaa aaagaagcag attgaactag agcctgtcca
     3121 gacgttcaat ttcgatcagt atctcttaaa atttgaacag atattacaag aatatgagaa
     3181 tatgattcta gatatcgtta gagctgatgg gactgccatg ttcaa
//
LOCUS       DATAAS010000061         2967 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_52165, whole genome shotgun sequence.
ACCESSION   DATAAS010000061 DATAAS010000000
VERSION     DATAAS010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2967
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_52165"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(419..613)
                     /locus_tag="VHF08_00915"
     CDS             complement(419..613)
                     /locus_tag="VHF08_00915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067243.1"
                     /translation="MTIGQYLQPTPKHLPLVEFIAPEKFNWFKEIAEQMGFVYVASGP
                     LVRSSYRAGEFFLEKICNQM"
     gene            complement(643..1296)
                     /locus_tag="VHF08_00920"
     CDS             complement(643..1296)
                     /locus_tag="VHF08_00920"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: protein motif:HMM:NF009544.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HEX2067244.1"
                     /translation="MEQLIKKPSWLRVRAPAGENYTKVKQSLRSLNLHTVCEEARCPN
                     ISECWGTGTATIMIMGEICSRGCRFCAVNSGKPVLLDTGEPERVAKAIKEWGLRYVVI
                     TSVCRDDLEDGGAEHIAKTIKAIKLLSPTIIVESLIPDFRGDDSSITKIVKSKPEVIS
                     HNIETVSRLTPKVRDARASYEQSLLVLKKIKDSNPLIYTKSSIMLGLGESEEEVIKQ"
     gene            1387..2472
                     /gene="gcvT"
                     /locus_tag="VHF08_00925"
     CDS             1387..2472
                     /gene="gcvT"
                     /locus_tag="VHF08_00925"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: protein motif:HMM:NF001567.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HEX2067245.1"
                     /translation="MKTPFYDIHRSSGAKMLNFHGWEMPLHYSSGIIDEHINTRTNVS
                     LFDVSHMGRFEVKGTGAYNCLQNLITNDISKLHNHQALYSPICYDNGRIIDDLIIYMI
                     NREKFLVVVNASNIEKDLEWIIKHSNNSAVVVENVCDKIALLALQGPLAQNLLEKAVM
                     VDIDLNQIMPFDLIITNIFGIECMISRTGYTGEDGFELFFDSSKIDIWNKLIQIGSTP
                     TYNIKPAGLGARDTLRLEAGLMLYGNDIDENTTPLEVPLRWTVKFEKKEFIGKKALIT
                     QQVNRKLVGFEVVEKRVARHGNEILIDSQKVGFVTSGSFSPTLKKSIGFCFVPIYVVP
                     NQLIEINIGSKLYKAKVLSSTRFYKRK"
     gene            2515..2955
                     /gene="gcvH"
                     /locus_tag="VHF08_00930"
     CDS             2515..2955
                     /gene="gcvH"
                     /locus_tag="VHF08_00930"
                     /inference="COORDINATES: protein motif:HMM:NF002270.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HEX2067246.1"
                     /translation="MIENIRFTKEHEWIVIKEGIAIIGISDFAQRQLGDIVSIELPKV
                     GSIFRRMQPMAIIDSVKASSDIYCAMSGEVVEVNEDLLEHPEWINQSPYKLGWIVKVK
                     PSNVEEFNSLMTNEQYNKLIGEIEEEEKRGEEEEDQRGGGTYQL"
BASE COUNT          987 a          467 c          546 g          967 t
ORIGIN      
        1 gtaggacatt atgataatct gtggctgatt ttctccaaat atattgatgc agtcaacgaa
       61 aattgtgtga aggttatgac gccgaaatgg gaaaacagga ttgcaacaaa tagaagtaag
      121 atgggttgaa cccctttacc acaagggata taatcccgct cagtccatcg ctattaagtc
      181 gaaaggttgc gataggtttt gaattcaatt atagtaaatg gtaacaaatt tttgttattt
      241 ttatatatta gtttggtata ttatgtcacc aaaaatggta acataatttt gttaacacct
      301 aaaaattgcg atagatttgt taacattcct aatattatgg taactagtat ttttgcatgt
      361 taacaaagca aaaattagta atgtacatac taatgagtag agcaacatct agacatcatt
      421 acatctgatt acaaattttt tccaagaaaa attctcctgc tctataagaa cttctgacaa
      481 gtggaccgga ggctacataa acaaatccca tttgttctgc aatttcctta aaccaattaa
      541 atttttctgg agcaatgaat tcgacaagtg gcaaatgctt aggagttggt tgaaggtatt
      601 gtcctatggt caatatactt actccaactg atctcagatt ctttattgtt tgataacttc
      661 ttcttctgat tctccaagac ctagcattat agaagatttt gtataaatca aaggattact
      721 atccttaatc ttttttagaa ctagaagtga ttgttcatat gaagctctag catctctaac
      781 tttaggagta agtcttgata cagtttcgat gttatgactg attacttctg gtttagattt
      841 aactatcttt gttatcgagc tgtcatctcc cctaaagtct gggattagtg attctactat
      901 tattgtagga gataaaagct ttattgcttt gattgtctta gctatgtgtt ctgctcctcc
      961 atcctctaaa tcatctctgc atacagaagt aattactacg tatcttaatc cccattcttt
     1021 aattgccttt gcgactcttt cgggttcacc tgtatcaagc aaaactggtt taccgctatt
     1081 aacagcacaa aatctacatc ctctactaca tatctcaccc atgatcataa ttgtagctgt
     1141 tcctgttccc cagcactctg atatattagg acatcttgct tcttcacaaa cggtatgaag
     1201 atttagggac ctaagtgatt gtttgacctt tgtatagttt tctcctgcag gagctcttac
     1261 tctaagccag gatggttttt ttattagttg ttccattttt atccttttaa ctaaacacaa
     1321 cagccatgat aataataagg gttaatactc atcactcatt aattatattt tgctggccta
     1381 cgcataatga aaacaccctt ttatgatatt catagatcct ctggagcaaa aatgctaaac
     1441 tttcacggat gggaaatgcc tttacactat tcttctggaa taatcgatga gcatataaat
     1501 actagaacaa acgttagttt atttgatgtc tcacatatgg gtcgttttga agttaaaggc
     1561 accggcgcct ataattgcct acaaaattta ataactaatg acatctcaaa attacacaac
     1621 catcaagcat tatattctcc tatatgttat gataatggta gaataataga tgatttaatc
     1681 atatacatga ttaacaggga gaaattcctt gttgtagtta atgcttcaaa tatagaaaag
     1741 gatctagaat ggattattaa gcattcaaac aactcagctg ttgttgttga aaatgtttgt
     1801 gataaaattg ctcttctagc actgcaaggg cctcttgctc aaaatcttct agagaaagca
     1861 gttatggttg atatagacct gaatcagata atgccatttg atcttattat tacaaatatt
     1921 tttggaatag aatgtatgat atcaaggacc ggttatacag gagaagatgg ttttgagcta
     1981 ttctttgatt cttctaaaat agacatttgg aataagctca tacagatagg ttccaccccc
     2041 acatataata ttaaaccagc aggtttagga gccagagata cactcagact agaggctggt
     2101 ttgatgcttt atgggaatga catagatgag aatactactc ctttggaggt cccgcttagg
     2161 tggacagtaa aatttgaaaa gaaagagttc attggaaaga aagctttgat aacccagcag
     2221 gtaaatagaa agcttgtagg gtttgaggtt gtagaaaaaa gggtagcaag acacggaaat
     2281 gaaatattaa tagatagcca aaaggtaggt tttgtgacaa gtggaagttt ttcacccact
     2341 ttaaaaaagt ctattggctt ttgttttgta ccaatatacg tcgtgcccaa tcaattaatt
     2401 gaaataaata ttggcagtaa attgtataaa gcaaaagttc ttagtagtac acgattctat
     2461 aagcgaaaat aaaaaaattt tttatggttt gcataacatt aaaaatagat ctttgtgatt
     2521 gagaatataa gatttacaaa agaacacgaa tggattgtaa tcaaggaagg aatagctatt
     2581 attggaatct cagactttgc tcagagacaa cttggtgata tagtttccat agaattgcct
     2641 aaggttggta gtatatttag acgtatgcaa ccaatggcta taattgattc agtaaaggct
     2701 tcttctgata tatattgtgc aatgagtggt gaagttgtgg aggttaacga ggacttgctt
     2761 gagcatcctg agtggataaa tcagtctcca tataaattag gttggatcgt aaaagtaaaa
     2821 ccgtcgaatg tggaagaatt taacagtttg atgacaaatg agcaatataa caagttgatc
     2881 ggtgaaattg aagaagagga aaaaagagga gaagaagaag aagatcaaag aggaggaggc
     2941 acgtatcaat tataatgaat tactcac
//
LOCUS       DATAAS010000062         3466 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1675422, whole genome shotgun sequence.
ACCESSION   DATAAS010000062 DATAAS010000000
VERSION     DATAAS010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3466)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3466)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3466
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1675422"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2074
                     /locus_tag="VHF08_00935"
     CDS             <1..2074
                     /locus_tag="VHF08_00935"
                     /inference="COORDINATES: protein motif:HMM:NF013713.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067247.1"
                     /translation="MPREVSKLYFIDLVGAAAATLMLDPLMQRLGAESVLLSAALLVL
                     GPTLIAALVLSAPSQKKNVSNAPIIENKIKLSGIIVLAASAILLAVNTDANILAIKPG
                     ENKGLHYQLEKPSEFEHLSTQWNSFSRIDVTRQLHPQDNDDDYNNGRSRALSAIAIDA
                     DADTPVFKWNGSSADLVWLKRFMDYLPFEISTQVNNTLVIGSGGGEDVLVALAGGSKK
                     VTAVEINPLIISTAKQFGDSAGNLYDRKEVELFIDDGRRFISSSDSKYDRIVIKLVDS
                     WAAQLAGGYALSENYLYTVEAFRQYLRHLDEDNGMLVMVRWNFELPRLMPLVAESLRQ
                     EKQGGNSEDIRKQILVVENRPGLYFESNNKQTIYPVLLIIKNNPFTDSEINLAKERVA
                     NNNARVIAMPGGYIEPPYDTLLLDKNYYHSQQLQESDLRAILELKPPTDDSPFYFAKE
                     QVPNQMILLLETVLGVSAVLALLLIYYSRRNRALPTMSSTSSWFHMIFVIFIGLGFMF
                     LEITFIQKFLLLLGTPIMALTVILFSILLSSGIGAYLSGKLFHKNPYKAVVVSIPLLV
                     GIVLAYYGFLQGIIDSSIIMQLPQRIMLTFALLSPAGLLMGFQFPSITRMASMHSNQG
                     EHTDGNITLLWGINVIASVIATVLTAISSMVIGFNGNLLLGAGLYLGALASAIAAAKL
                     RQKLTLST"
     gene            2354..3244
                     /locus_tag="VHF08_00940"
     CDS             2354..3244
                     /locus_tag="VHF08_00940"
                     /EC_number="2.1.1.72"
                     /inference="COORDINATES: protein motif:HMM:TIGR00571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009007 - site-specific
                     DNA-methyltransferase (adenine-specific) activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Dam family site-specific
                     DNA-(adenine-N6)-methyltransferase"
                     /protein_id="HEX2067248.1"
                     /translation="MENRISSILKWAGGKRRIAHFLSRFSPEVIDLYFEPFLGSGALF
                     LYLAQTKPRFKAILSDSNNDLINVYKCVRDNVRNLIDVLKIHQSSYYKNPEEYYYYIR
                     NTYSPASDLENAARLIFLNKTCYNGLYRVNKSGSFNVPHGTYERPVICNSKKLEAFSE
                     ILQRTDAEIICDYYQNVTLRCQAGDFVYLDPPYLPLSKTCYFKDYTKDEFGYLEQVML
                     AKEFRRLSNMRSTVLLSNSNSEFITNLYKDFNIMTISTSRPINCNASNRLRHQELLIT
                     NKRLLVTKAVTNDAETISQM"
BASE COUNT         1135 a          589 c          631 g         1111 t
ORIGIN      
        1 aatgcctaga gaggtaagca aactatattt tatagatcta gtaggagcgg cggcagctac
       61 acttatgctt gatcccctga tgcaaagatt gggtgcagaa tctgttctac tttcggcagc
      121 tctgttagta ctcggtccta cgcttattgc tgctttagtg ctatctgctc catcacagaa
      181 aaaaaatgta tcaaacgcac caataattga gaataaaata aagctgtctg gaataattgt
      241 gttggctgcc tctgctatat tattagcagt taatacagac gcaaatatat tagcaataaa
      301 acctggcgaa aataaaggat tacattatca gctggaaaaa ccttcagagt ttgagcattt
      361 atcaacccaa tggaattctt tctcccggat tgatgttact agacaactcc accctcagga
      421 caacgacgac gactacaata atggcagatc cagagccttg tccgcgatag ccatcgatgc
      481 cgatgctgat actccagtat tcaaatggaa tggttcttct gcagatcttg tatggctaaa
      541 aaggtttatg gattatctac catttgaaat atcaacgcag gtgaataata ctttagttat
      601 cggtagcggt ggaggcgaag atgttttggt tgccctagct ggaggctcca agaaagtgac
      661 tgcagtagag ataaacccat tgataatatc aacagctaaa caatttggcg attcagcagg
      721 aaatttatac gaccgtaagg aggtggaatt attcatcgat gatggaagac gattcatcag
      781 ctctagtgat tcaaagtatg ataggatagt aataaagctc gttgattctt gggctgctca
      841 acttgctggt ggatatgctc tttcagaaaa ttatctctat acagtagaag cgttcaggca
      901 gtatttacgt cacttggatg aagacaacgg gatgcttgtt atggtgcgtt ggaactttga
      961 actgccaaga cttatgcccc ttgtagcaga atcgttacga caggagaaac agggaggaaa
     1021 tagtgaagac attagaaagc agattttggt agtagaaaat cgtcctggat tatattttga
     1081 atcaaacaat aaacaaacga tatatccagt ccttctaata ataaaaaata atccatttac
     1141 tgattcagaa attaatttgg caaaagagag agtcgctaac aataatgcta gagtcattgc
     1201 aatgcctggc ggatatatag agccacctta tgacacatta ctattagata aaaactatta
     1261 tcatagtcaa caattacaag aaagtgatct tagagcaatc ttagaattaa aaccacctac
     1321 tgatgattct ccattctatt ttgcaaaaga acaggttcca aaccagatga tactgctctt
     1381 ggaaactgtg cttggagtat ctgcagtact tgctttgctt ttgatatatt attcaaggag
     1441 aaatagggcc cttccaacca tgtcatcaac ttcgtcatgg tttcatatga tctttgtaat
     1501 ctttatcggg ctcggattta tgtttttaga aataactttt attcaaaaat ttctgttatt
     1561 acttggaaca ccaataatgg cattgactgt tatacttttt tcgatcttat tatctagtgg
     1621 aataggtgca tatttgagcg gcaaactatt tcataaaaat ccttacaaag ctgtagtagt
     1681 atcaatacca cttctggtcg ggatagtgtt agcttattat ggctttctac aaggaattat
     1741 agattcatct ataattatgc aactgccgca gagaattatg ttgacttttg cacttttatc
     1801 gcctgctggt cttcttatgg gattccaatt tccatccatt acaagaatgg cttctatgca
     1861 ttcaaatcag ggtgaacata ctgatggaaa tattactcta ctatggggta taaacgttat
     1921 cgcctcagta atagcaacag tgttgactgc tatatcgtct atggtgattg gctttaacgg
     1981 caacctgtta cttggagcag gattatatct tggggcatta gcatctgcca tagcagcagc
     2041 aaaattaaga caaaaactca ctctatcaac ttaaatctgc tgatccatta tatatgattg
     2101 caatgtatcc aatttaatat ttaccgtgat acatgcatag atatgtatat atgtatatac
     2161 atctacattt atagatatat atacacacat atttatctgt atatcatcgg cttggatacc
     2221 agttgagatc agaacttaat tctattttct aatttatcgg attatgaaag tataagtaga
     2281 ataaagagta cattcttcta tttctttaca gatgagactt tttaaataat ttcgtctcat
     2341 gctatataga ctcttggaaa acaggataag ttctattctc aagtgggcag gaggaaaaag
     2401 aagaattgct cattttctaa gcaggttttc tccagaagtc attgatctat actttgaacc
     2461 ttttcttgga agcggagctc tattccttta tcttgcccag acaaagccta gattcaaagc
     2521 aatattgtct gactcaaata atgaccttat aaatgtctat aagtgtgtta gagacaatgt
     2581 tcgaaatttg attgacgtct taaagataca tcaatcaagt tattacaaaa accccgagga
     2641 gtattattat tatatacgga atacttactc tccagccagc gatttagaaa atgcagctcg
     2701 cttgattttt ctaaataaaa catgttataa cggtctatat agggtaaata agtcaggatc
     2761 gtttaacgtt ccacatggaa cttatgaaag acctgtaatt tgtaattcca aaaaattaga
     2821 ggctttttct gaaattttac aaagaacaga tgcagagata atttgtgatt actatcagaa
     2881 tgtaactttg agatgtcagg ctggcgactt tgtctatcta gatcctccat atcttccatt
     2941 gagcaaaact tgttatttta aagattatac aaaagatgag tttggatatc tcgagcaagt
     3001 aatgttagcg aaagagttca gaagattaag caacatgaga tccactgtat tattatcaaa
     3061 ttcaaattcc gaattcataa caaatttata taaagatttc aacataatga caatatctac
     3121 atcaagaccg attaactgca acgcttcaaa tcgtctgaga catcaagagc ttttgatcac
     3181 aaataaaaga ttattagtta caaaagctgt tactaatgat gcggaaacaa tatctcaaat
     3241 gtaattaata ttttgaatac cttgaattca cggattattg gtgctttcat tcgggagaat
     3301 cttatcagat aaaaaaagat attcaagatt gtgtgtgaaa taactgtttg ttaagatagc
     3361 tttaggatgg attttattat aaagtaccat tattttgttt gtattaatgc tcacaaaagc
     3421 tttattcttt aacctgattg taatcgttta aattgcatct actgct
//
LOCUS       DATAAS010000063         2341 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4378665, whole genome shotgun sequence.
ACCESSION   DATAAS010000063 DATAAS010000000
VERSION     DATAAS010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2341
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4378665"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(798..965)
                     /locus_tag="VHF08_00945"
     CDS             complement(798..965)
                     /locus_tag="VHF08_00945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067249.1"
                     /translation="MSMLVTMHPDDLNFLWTCHECNSSFIFHSDVDDHKDKTGHLILS
                     KFDLLSGKLLA"
BASE COUNT          860 a          340 c          316 g          825 t
ORIGIN      
        1 gctacgtctt ctgcaatatc gttaattatt tttcttatac caattttttg ttgctgttct
       61 tgttgcccat agattccgac ttgtattgaa ggtacaactg atattccact tagcaatgct
      121 attaatgata taataactcc taaatttgat atgatttttt ttttgaacat attatacaat
      181 cacaccttat ttttacccaa ttataagact atgtatagtt atcaatattt gatatgtaat
      241 cactttaata acacagatat atataaggac agacttgttc tcattctttc ctttactgaa
      301 agtaattaac attatcttag tcgttaatca gtcagcaagt agtcaattct gactttgact
      361 tagatatact aacttcatat tccatttaca gttatccata tagcaaacaa caattaatag
      421 ttacattccg agtattttta tagatagtct tgacctgaac ttagtataat aaagtactct
      481 aggcatcact cgtgccaatt cagtattcaa atactggtag atcttcctta gtttaaactc
      541 aagataagtt tttttaatta taaattgata tacataccag taagaaaatc gtgcataatt
      601 acagcgtagg tatattgcaa taaaaccttt gtagtatagc acattacata ctttacataa
      661 tgaagacgag tatgcttcct aaggaagtga ccaagaaaat tactggcctt caccatttta
      721 taatatatat gtgattcaaa taatttttta tatttagtta tagatcacat gctagtcctt
      781 tgcagattac aattatctta tgctaatagt tttcctgaaa gtagatcaaa cttggataat
      841 attagatgtc cggtcttgtc tttatgatca tcaacatctg aatggaaaat gaaactagaa
      901 ttacattcat gacatgtcca caggaagttg aggtcatcag gatgcattgt aactaacatg
      961 ctcacattta tgtcttttaa accctctgta gctatgtatc atctgtttat tgatgaatat
     1021 tatgatataa taaagaacaa tagaatttat ggagtgcaat cttttagatt gatacaatat
     1081 atgattttat attatttaat atacatatat atatatgacg aaatatagtc tcaaattgac
     1141 aaaagaaatt tctgatatcc gctgaggatt aatattcact catatctata aataaagcta
     1201 tctaactttc aatttctatt tctaatccag ctaaacatca agttctcgac gaacaactac
     1261 cattttctaa cgtaatattt gtatatatcc tgctaaatca atacatacag ctaaataatc
     1321 gaagcacatc atggactgct aattcacatt tcttgttgat acaatttagc acatagtaga
     1381 tgcaatttca gcaataaaat tcgattatga aactaacaag gaagataatt aaaatttctt
     1441 aaattcataa caaaatgtct aaacctcatt ttttattggg actattcttt cacttaaatt
     1501 gcaaagacta taaaaaagtt gatgcatata agaacattag atcttctttc agaaagaagg
     1561 ctaacaaagg gatatcagtt gagacaataa gatatagatt atggtctgct gctaatatat
     1621 gaagtagaat attctttatc cagggttgta tgtgcaatta cacgaaacaa atttgggata
     1681 tagatattct ataataaatt aactagtaaa ttgttgttat ttttccaagg ctaagtatta
     1741 tgcatcatat cagtagattt gagtcacatt acattttata tctcataagt taatatatta
     1801 ttaaatgacc ttgtattaat aataacattt actgaaaaag caaaaaaata tcattcatca
     1861 agaattcata gtaatccata ttatcatagt atataatgtg caaatttatt atgatcatat
     1921 agacgaaaaa cattgaaagg aattcatgtc aattgtctaa aattattgct tacttatcaa
     1981 aggtctatga gtagtcattt tccttagatt ttttatatca ataacagaat tgaagagcta
     2041 ttgtttaagt aagatttttt atatataacg actagatata tagtgtttgg gtaaaagatc
     2101 atcatataat acaccatcat atggaatgga agctatcata agcacaatag ataatgaaaa
     2161 aaaaactact tgaggcattc aggatagaat gtgagaacca acgtaagaat cttaatcatt
     2221 tgaatgagca gaccggtaaa ttacgcaata cgagcaagag aaagaataga aacattataa
     2281 aattaccagc agatagtaac gtatctatgg attgatctct tcaataataa tgtgtcatgt
     2341 a
//
LOCUS       DATAAS010000064         2047 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1678677, whole genome shotgun sequence.
ACCESSION   DATAAS010000064 DATAAS010000000
VERSION     DATAAS010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2047
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1678677"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1258
                     /locus_tag="VHF08_00950"
     CDS             <1..1258
                     /locus_tag="VHF08_00950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="vitamin B12 dependent-methionine synthase
                     activation domain-containing protein"
                     /protein_id="HEX2067250.1"
                     /translation="YLIRQEGVSKGKLVLCTVYGDVHDIGKNLVKTIFINNGYTVYDL
                     GKQVPLQRIIEKIQEVNADAVGLSALLVSTSKQMQYFVQHARKNDMRIPVLCGGAAIN
                     SSFINRIAKEDAIYNHGVFYCKTAFEGLRVMNKLMSNERNQYIEEWQQKLHRWQEKQD
                     SRVESVDLLQSSIKPVSPPIPPHVNKQIRLRANEIDLLEIWKFINKKSLFVLSWGIRG
                     KGAEGLSQEAERLFEEWKIRVLQEKLFSPEIVYGYFRCHNKDGKLVVDLPQSKGEVTF
                     DFPRSSKQKHLCLTDFFGENDIVAFQAVTVGNRVTEIIDMWNQDNKYTDAYYLHGLAV
                     ETAEALADWINLKIKNELNIGIKRGLRYSWGYPSCPDISQHHLVWKLLDPTKSGMRLT
                     ESGQIIPDQSTAAIVVHHPEAEYFVL"
     gene            1728..>2047
                     /locus_tag="VHF08_00955"
     CDS             1728..>2047
                     /locus_tag="VHF08_00955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067251.1"
                     /translation="MTINNFALACAIDGSPSYFTYHNQIMLIIQSKNHAEHKTSDFEY
                     IEPFIEALISHESIHVVIKKLEGADISDSLDDIELLVERNGTRFLVTLNNMLFAKDMS
                     GIVLP"
BASE COUNT          706 a          322 c          369 g          650 t
ORIGIN      
        1 gtatcttatt agacaagagg gagtaagcaa aggcaaacta gtgttatgca ccgtgtatgg
       61 cgatgttcat gatataggta aaaatctggt taagactatt tttataaata atggttatac
      121 agtatatgac ttgggaaagc aagtaccatt gcaaaggatc attgaaaaaa tccaggaagt
      181 taatgctgat gccgtaggac tttcagccct ccttgtttca acttcaaagc agatgcaata
      241 ttttgtacaa catgcaagga aaaatgatat gagaattcct gtcttatgtg gaggggctgc
      301 tattaatagc agttttatca atagaattgc gaaagaagat gcaatttata atcatggtgt
      361 attttattgt aaaactgcat ttgaaggctt gagagtgatg aacaaactca tgtctaatga
      421 aagaaatcag tatattgaag aatggcaaca aaaacttcac aggtggcagg aaaaacagga
      481 ttctagagtt gaatctgtag atttgctgca aagcagcatc aaacctgttt cgcctcctat
      541 tccgccccat gtaaacaaac agatacgact tcgagctaat gagattgatt tgcttgaaat
      601 atggaaattc attaataaaa aatctctctt tgttctttct tggggaattc gcggaaaagg
      661 cgctgaaggt ttaagtcagg aagctgaaag gttgtttgaa gaatggaaaa taagggtact
      721 acaagaaaag ctcttttccc cagagatagt ctatggttat tttagatgtc ataataaaga
      781 cgggaaactt gtagtagatc taccccaaag taaaggcgag gtgacttttg attttcctag
      841 gtcctctaaa caaaaacatc tctgcctgac tgattttttt ggagaaaacg atatcgtcgc
      901 ttttcaggca gtcacagtag gtaatagggt aacagaaatt attgatatgt ggaatcagga
      961 taataaatac actgatgcat attatttaca tggtttagca gtagagactg ccgaagcctt
     1021 ggcagattgg atcaatctaa aaataaagaa tgaacttaat ataggcataa aacgtggcct
     1081 taggtacagt tggggttatc ctagttgtcc tgatatttct cagcatcact tggtctggaa
     1141 attactagat ccaacaaaat ctggcatgag attaacagaa tctggacaaa taatacctga
     1201 tcaatcaact gcagccatag tggtacatca tcccgaagca gaatatttcg tactttaatc
     1261 tattaggata tctaaattat cattttcttt gatttaagcc caaacaaaca aagtcagatc
     1321 aataacaact ttatcattta tgttatgatc aattgatatt ttatttgctc ggcggatttt
     1381 gaaaagttag taactattac aaagaaatct cgagtatgaa tctaattggg atcaattatt
     1441 aaataagaat accatgtctt tctgattttg agatcatcta gatcccaaat caatctacaa
     1501 caaaatcaat attatatatt tcaattttta aaggtttggg ctatgcttaa atattctctt
     1561 atattacatt atattgtaca cgtaaaaacc gtctctatat ctcaacatga aaaagtcatc
     1621 tgtttcttat aattatacag tactcttcat aattatgtga ttcctatttt cattctagat
     1681 gtatgagtat ataaaatctc ataataaata atattatcta gacaggtatg acaataaata
     1741 attttgcttt agcttgtgca attgatgggt ctccatcata ctttacatat cataatcaaa
     1801 taatgttaat tatacaatcc aaaaatcatg ctgagcataa gactagtgat tttgaatata
     1861 ttgaaccgtt tatcgaggca ttaatttctc acgaatccat tcatgtcgtc ataaaaaaat
     1921 tagaaggagc agatatctca gactctcttg atgatatcga actacttgtc gaacgtaacg
     1981 gaacgagatt tctggtcact ttgaacaata tgctttttgc aaaagatatg tctggcatcg
     2041 tactgcc
//
LOCUS       DATAAS010000065         3127 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_598266, whole genome shotgun sequence.
ACCESSION   DATAAS010000065 DATAAS010000000
VERSION     DATAAS010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3127
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_598266"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            67..441
                     /locus_tag="VHF08_00960"
     CDS             67..441
                     /locus_tag="VHF08_00960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067252.1"
                     /translation="MRKENDIRLRIDMLQGQSKTIAEMLVKALSERNTISINEYSVRL
                     ANIRDRIEELLWVLNKKDAPSNLLLEVYTINVPGKKEVSLTMAQILEKLKIGELTMND
                     LQADVSDKVRKAALHSKKFNNT"
     gene            757..2415
                     /locus_tag="VHF08_00965"
     CDS             757..2415
                     /locus_tag="VHF08_00965"
                     /inference="COORDINATES: protein motif:HMM:NF020976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase D family protein"
                     /protein_id="HEX2067253.1"
                     /translation="MNREVTIIIFTLSFGLIILSSNISMALLLHHPTSYAAQQDSNNS
                     LFITHGIASGDVTNQSVIIWSRANREAQLHVEYDTDSNFPDPKSSNIALANQTTDYTS
                     HVKLEGLSPDTVYYYRVWFSSDTSSSSPSSFDIKNASVVSDNMAGSFRTAINSSASSN
                     KDIKFIFAADLGGQMHCRQIDKGGYSIFSKMQELSPDFFIANGDMIYASDKCPSDGPD
                     GWRNIQGNFSGIADPDVNWSDISQVRDVYLKHWQYNRGDPYLQRFLQNTSMYSQWDDH
                     EVINDFGASWQYWNSFNADREGYPNIVKAGREAFFNYSPIDRNPEDPNRIYRSFSWGP
                     DLDLLILDARSYRSPNSMADKPENNKTMLGSEQLQWLKQKLVTSSATWKVLSSDVPIS
                     VPTGSNASILGRDGWASGNETTTTTNSFSKTGFESELQGLLEYLDYNNIKNIVFVTTD
                     VHFPANIRYEIDANGDGDKLIFHELISGPLSAFRFGMPGGIPIPKLDTTFNPRLLYEE
                     GGIFNFGYVKIQRTPEDNKVHLIAEVRSEDGLARPNSLLDLVPQ"
BASE COUNT         1043 a          544 c          568 g          972 t
ORIGIN      
        1 tgtactagtc tccttctttt gaacgtagct gcatttaata tattaatgag tattttcatt
       61 taacaattga ggaaagaaaa tgatatcagg ttaagaatag atatgcttca aggacagtct
      121 aaaaccattg cagaaatgtt agtcaaggca ctatccgaac gtaatactat atctattaat
      181 gaatattccg ttaggttagc taatatccgt gatagaatag aagaactctt gtgggtatta
      241 aataaaaaag atgcgccatc aaatcttctt ctggaagttt acactataaa tgtgcctggc
      301 aagaaagagg tatctttaac catggctcaa attttagaaa agttgaagat tggtgaactg
      361 actatgaacg accttcaagc tgatgttagc gataaggttc gaaaggcggc attgcattca
      421 aaaaaattta ataacacatg attataaatc tacataaaga agagagaagg gaataattga
      481 tatgtacgta actatcagtg agttcattta ctgtgtatga tgctgtcata tgattatatg
      541 ccggaagtga tatgaacttg agagagacat tgttatttat tataaaaatg caatgctatt
      601 agttacacca gaaacatttt gtatttctgc aagttagttt gttctcagct tcatattgtc
      661 atagacttac cgtgcattgc gtaaaaaaaa taaaacatta gtttatatgt acatccttat
      721 atagaatggt agacatatcg atgatgaacg tttttcttga atagagaagt aacgattata
      781 atttttacac tttcttttgg cttaattatt ctcagcagta acatcagtat ggctttatta
      841 ttgcatcatc caacatccta tgcggctcaa caagatagca ataattcttt gttcataact
      901 catggtattg caagtggaga cgttacaaac cagagtgtaa taatatggtc acgtgccaat
      961 agagaggctc aattgcatgt agaatatgat acagattcaa acttccccga tccaaagtca
     1021 tcaaatattg cactagcaaa tcaaacaaca gactacactt cgcatgtaaa acttgaaggt
     1081 ttaagccccg atactgtata ttactatcga gtgtggttct catctgatac ttcctcttct
     1141 tccccttctt cttttgacat taaaaatgcg tctgtggttt cagataatat ggcagggtct
     1201 tttagaacgg ccataaactc ttcagcatct agcaataaag atattaaatt tatttttgcc
     1261 gctgacctcg gaggtcaaat gcactgtcgg caaatcgata aaggaggata ctccattttt
     1321 tcaaagatgc aagaattatc gcctgatttc tttattgcaa atggtgatat gatatatgct
     1381 tctgataagt gtccttccga tggtcctgat ggatggcgaa acatacaagg aaatttctct
     1441 ggaatagcag atccagatgt taattggagt gacataagtc aggtacgtga tgtctatcta
     1501 aaacattggc aatataatag aggagaccca tatcttcaaa gatttctcca gaacacatca
     1561 atgtactctc agtgggacga tcatgaagta attaatgatt ttggagcgtc atggcagtat
     1621 tggaattcat ttaatgctga tagagaaggg tatcctaata tcgtaaaagc tgggagagaa
     1681 gcattcttta attactcacc tatcgacaga aacccagagg atccaaatag aatatatcga
     1741 tcatttagtt ggggaccaga ccttgatcta ttaattctag atgcaagatc atatcggagt
     1801 cctaacagta tggctgacaa acctgaaaat aataaaacta tgctaggaag tgaacaactt
     1861 caatggttaa aacaaaaact cgtgacttct tcagcaacat ggaaagtctt aagtagcgat
     1921 gtaccgatct cggttcctac tggctctaat gcttcaattt taggacgaga tggttgggct
     1981 agcggaaacg aaacaacaac aacaacaaat tcgttctcta aaactggttt tgagagcgaa
     2041 ctgcaaggac ttttagagta tctagattat aacaatatca aaaatatagt ctttgtaaca
     2101 actgatgttc actttccagc caacataaga tatgaaatcg atgctaatgg tgatggcgac
     2161 aaattaatat tccatgagct tatctctggt ccactcagcg catttagatt tggtatgcca
     2221 ggcggtattc ctattcccaa attagataca acattcaatc ccagattgct atatgaagag
     2281 ggtggtatct tcaactttgg ttacgtgaag attcaaagaa cgcctgaaga taacaaagta
     2341 catctaatag ctgaggtgcg aagcgaagat ggtcttgctc gtccaaattc attattagat
     2401 ctggtgccac aatagcagcc tgcattaaaa attgcttttg tatatgtctt atgataattt
     2461 tgtttatagt ctgtgattct gtatggttta aaatatcaat ttaattcact gccaaaatat
     2521 gcagataaca tttttttgtt attaatgtat tcgctagatg gaggagatgt gatgatagtg
     2581 gcattgacaa ttttatttca aattaaatca gatccattaa tgttcaaccg ctccattttc
     2641 atttgataat ttcgcatatg tttatagatc aaaccaaaat aatgatggga atgctcttta
     2701 ttcttagata gaatagttca taaaatattc aaaaggttca gaaagctatt ggaaaaggaa
     2761 aataatatgt aacaaagcga gtggcaaaat taagtcaatt atgtcctgca tcccatcaaa
     2821 ccagtgagct aacggcttct catactgctg gctatagact aattatgact actatactga
     2881 aagaagcaat taagatgaag ccaatattca ccaattgtac tggtcaatct actatatccg
     2941 gactgcttct cactgactga gacaaccagt ataagtacat tatagaggat tgatggagat
     3001 actctttctt atcctaagat aaaatgtcag aaatctccaa agcctcccgc atcaaatcct
     3061 ccaaaatctc ctgatgtatc tgcttctcct atttggctgc tatcttctcc accagtctca
     3121 ctaccac
//
LOCUS       DATAAS010000066         4617 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_61290, whole genome shotgun sequence.
ACCESSION   DATAAS010000066 DATAAS010000000
VERSION     DATAAS010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4617
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_61290"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..125)
                     /locus_tag="VHF08_00970"
     CDS             complement(<1..125)
                     /locus_tag="VHF08_00970"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2067254.1"
                     /translation="MMMMYLDIIMFNRIGAVILLVSDMKKSLKFYRDTLGMELKK"
     gene            complement(437..958)
                     /locus_tag="VHF08_00975"
     CDS             complement(437..958)
                     /locus_tag="VHF08_00975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2067255.1"
                     /translation="MNVLIAEDEHDIALLYKMALERRNHQVTTTENGENCLKAYHEKC
                     QNIRFAIHDIGQTLPFDVVILDHKMPKINGMQVAEEILAMNPRQRIIFASAYVKETLT
                     DSIKKLKQVVELMQKPFNVNTLIDTVEDKEIYSELKGLNVDLDIIKAINPTHEQIIDL
                     LKRLRTVQKGRTF"
     gene            2265..2417
                     /locus_tag="VHF08_00980"
     CDS             2265..2417
                     /locus_tag="VHF08_00980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067256.1"
                     /translation="MYALQLAKLSGAKMIIDISRTGYKLRMAQENFGVDAIINISTEK
                     LRVGIK"
     gene            complement(2621..3328)
                     /locus_tag="VHF08_00985"
     CDS             complement(2621..3328)
                     /locus_tag="VHF08_00985"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF024811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX2067257.1"
                     /translation="MKRPFIFFDLGQTLINEWSFIDYFDMRFFEMLNGFGARINFRNY
                     QTIRDNVIRNRKIGHGSVRELIIEVCKLICQQGYGKIILQRLEPELKEAKRNFFCLFD
                     DAEQTMNSLLIQYDLGIIANQSEDILKILEESKINRFFKVIVISSEVKVRKPDPEIFR
                     LAMNLANTSPEHCIMVGDRLDTDIGPANKLGMKTIRTTNSLFKLQQPMNEFEKPTYVV
                     ANLSEIANILDKLPPDL"
     gene            4186..4314
                     /locus_tag="VHF08_00990"
     CDS             4186..4314
                     /locus_tag="VHF08_00990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067258.1"
                     /translation="MSLSILQRIRSSVALFVEKIGPLSKTEVIQGPKKSIQLLKID"
BASE COUNT         1580 a          694 c          677 g         1666 t
ORIGIN      
        1 tctttcttta attccattcc tagggtatct ctatagaact taagagattt tttcatatct
       61 gaaaccagaa gtataactgc tcctattcgg ttgaacataa taatatctaa gtacatcatc
      121 atcatctctt gtaattcata aatctttcgg agagttatag acttatgcca tcaaatcaga
      181 attcaagata tgaaaaaagg gaattcacgt ctgaattctg ctaataaaat ttttttaatg
      241 atgacttttt ctaaatgttt gttagcaatg atacttttta acataattga ttttatgtgc
      301 catacattta cattctgtac ttgaaatatt aataatttta taaatcaatt ataccaaagg
      361 gagtaactta tggaatttgt tgtcgttatt tattgcgacg ttaatcatta tcagaaatca
      421 ttcaataaag tctaaactaa aatgttctac ctttttgtac tgtccttaat cgttttaaca
      481 aatctattat ttgttcatgt gtgggattaa tagctttaat gatatctaaa tccacattca
      541 atccttttaa ctcagaataa atttctttgt cttctactgt atcaattaat gtatttacat
      601 taaaaggttt ttgcattagc tctacaactt gttttaactt ttttatagaa tctgtgagag
      661 tttctttaac atatgcagaa gcaaatatta ttcgctgacg gggattcatt gcaagaattt
      721 cttccgctac ctgcatacca ttaatcttag gcattttatg gtcaaggatt acaacatcaa
      781 acggcaatgt ttgcccaata tcatgtattg caaatcttat attctggcat ttttcgtggt
      841 aagctttaag acaattttcg ccattttcag ttgttgtaac ttggtgattt cttctttcta
      901 acgccatttt gtataagaga gcgatgtcat gttcgtcttc agctatcaat acattcatga
      961 ctaaaaacca ttttataata ctcaattaga cctactattt tatgttttta gtctaatacc
     1021 ttgtaggtgg atgtctaaaa tatcgaatct atagttgatt catttcgtcg acgaaaatac
     1081 tataacaatt aattttagaa gatataaaat tctgtaatta ttttggtcac agttttttat
     1141 gtatagaaga caaataaata aaaagtgtta cacaagaggg tatcgaatat gcagtaatac
     1201 tcggctaagt gtatgattat gtagggaagc agaagaagga aaaaaaggta aatatttacc
     1261 tttttaaaac aaactaaaga atgatcaaga cataattgtc aaaaatacgg tttcaaagtg
     1321 tttatctgat ataaacagca attaatacaa atattagatt tgcaattgat ttatttaatt
     1381 tatttttcaa atcctgctga tagtaattaa agcagactca atatcactca tctagaaatt
     1441 gtgctgccaa ttttagagtt aatcaatcga ataaaaaatt tattatcaaa tggaatccat
     1501 tgtgttttgc gaataataca acgaaagtgt ctcccaaatt cataataact tatgtaattt
     1561 tcaataaaaa aagaaatcta caaattcaca aatacacaaa agaatatttt caaacgattc
     1621 atattggatt atatatatca gaaggtttac aatacagagt acgtgtgcta taattattat
     1681 taaaattctc tattactaat atttcatcca atggattttt agttcctatg atagtatttc
     1741 ttttatatgt agcagatatg ttactaccat acactcaccc aatcaattat ttaaagattg
     1801 ttactattta taggtaacaa taaatatcag agtcagtcat aaacattatt gcttttaaaa
     1861 ctcaccttca ttatctagta gtctactatt aaagtcaatt actttaaaag tttgcttaac
     1921 aaaaaaagat aaaacataat cttctaagca ttatcatatg gtagcaaatt ctataagcta
     1981 ttgctaatac tactgcttct actactgcta ctcaatatgg attagatata ggagatatta
     2041 ctggaattgt tgcccctatc gctactgtca taactttctg acatatcgtc atggcacccg
     2101 ggtaaatgtt aaaagaatag tgccgcttcc ttcaaaggtg cttatgaatt tggagttagc
     2161 ctaagttgtg caggtattac agctattcat gcggtaaatt cttttggcaa agttagtctt
     2221 gatgaaaggt tacagtacac ggtacaggag gagtaggaat aggaatgtat gcattacagc
     2281 ttgcaaagtt aagtggtgca aaaatgataa ttgacatcag caggaccggt tacaaactac
     2341 ggatggcaca agagaacttt ggagtagatg caataataaa catttcaact gaaaaattgc
     2401 gtgttggtat aaaatgaata acgtctggca aaggtgttga cagcatattt gatcgtgtag
     2461 tgaataatga gattattgac agcattttga agatacttgc taattctggc aaacttgtga
     2521 tcattaaatc tccgatttta tattcgagaa aaaaatttga tattttgtaa aataagtaac
     2581 ctacttgtct ggatatagta atccgttata ttatatgagg ttatagatca ggtggtagct
     2641 tatctagaat atttgctatt tcgctcaaat tggcaaccac atatgtaggt ttctcaaatt
     2701 cattcattgg ttgttgtaat ttgaaaagcg aattagtagt cctgatagtt ttcattccta
     2761 atttgttcgc tggaccgatg tcggtgtcaa gtctatcgcc gaccatgata caatgctccg
     2821 ggcttgtgtt ggcaaggttc attgccagac gaaatatttc tggatccggt tttcttactt
     2881 taacttctga tgaaatcaca ataactttaa agaatcggtt tattttcgac tcctctaata
     2941 tctttagaat gtcctccgat tgattagcta ttattccaag atcatattgt attaatagag
     3001 aattcattgt ttgttcagca tcatcaaata aacaaaaaaa atttctcttt gcttctttta
     3061 attcaggctc taacctttgt aaaatgatct tcccataacc ctgctggcat atcaatttgc
     3121 aaacttcaat aattaattct ctgacactgc catgacctat cttgcgattt ctaataacat
     3181 tatctcttat tgtctgataa tttctaaaat taattcttgc tccaaaacca ttaagcattt
     3241 caaagaatcg catgtcaaag taatcgataa agctccattc atttattaat gtctgcccta
     3301 ggtcaaagaa aataaatggt cttttcatat tatcacattt tttatgttga tcaatacaag
     3361 ggtttgtatt tgtgttaata acactattgc aattgtttat cactggctat ttgctatttt
     3421 gatatcttat aaattggata tcaatagagt taatatttat caaaacaaag aacctaataa
     3481 ttatgcatat tattatacta ttagtaaatc attcgcaatg agatttattc cataaaaatg
     3541 aaataattgc tcaagaaagt gatttcataa atgtcttttt agcaaaaggt tatattttaa
     3601 caagagtaat gagaagatta cttagtcatt gttagtgtaa acagtgtcaa tacaaagtct
     3661 gacgctttta acctctacta ataagagtat tttctataca gaagacgcta tgcatatata
     3721 tcatttaact aaatagcatc tttatttgag gagtattgta cctatacatg ttgcatgtat
     3781 aatattgtaa ttgttctaat ttagtgagac tcatctttat ggttttgtcc ttaatctctt
     3841 caatcaattt actaagacat aaagataaaa catcaaactt aatggtggtc ggctaaattc
     3901 catgtagata atgtttttct tacatgtcaa tataatgctt ttaacaaatt ctgtatataa
     3961 gaaataagta gtagacaact aatcattaag agactaaaac aactggagaa attatctaat
     4021 attacgtcta gacacactcc tattattcca taatttaaag attgataagc aagttaaatt
     4081 ctttagatat gtgtattata ttgacagaaa atcctgtcag acatattgat gatcttagag
     4141 agatggaaaa tctaaaacgc gaatatcaga tacgctgtag tcactatgag cttgagtatt
     4201 cttcaaagaa taagatcatc agttgcacta tttgtggaaa aaattggtcc tttatcgaaa
     4261 accgaagtta ttcaaggacc aaagaaatct atacagctgc tgaagattga ttaaaatcat
     4321 ctaaaaatga ccgtcatttc atgttttcta taattattat ttcaaacaat atattgtaaa
     4381 atagatatca ggcggttgaa atataaaaac agaagttaat ttttggtcat aacgttatag
     4441 gctactccat tattgctatt agtattttcc ttactatcgt atattcattg cttttatcat
     4501 ccagagtcta agattgatgt tgtgattgtc cattatatca tcttagaaat gatcaatacc
     4561 agcaattatc attacctcag tttactaaat tggtaaacta tagagtgatc atttaat
//
LOCUS       DATAAS010000067         3376 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3304313, whole genome shotgun sequence.
ACCESSION   DATAAS010000067 DATAAS010000000
VERSION     DATAAS010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3376)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3376)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3376
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3304313"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            23..160
                     /locus_tag="VHF08_00995"
     CDS             23..160
                     /locus_tag="VHF08_00995"
                     /inference="COORDINATES: protein motif:HMM:NF003161.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L40e"
                     /protein_id="HEX2067259.1"
                     /translation="MAQQRRLFFKICFKCGGKNPISSSRCRKCHGTQMRLKNRSLGVK
                     K"
     gene            562..2286
                     /locus_tag="VHF08_01000"
     CDS             562..2286
                     /locus_tag="VHF08_01000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX2067260.1"
                     /translation="MTHPKVVLTADRTLMSPYRGISLASFFGCAPALDTNRSHDSIWY
                     HILGNQVTPRILFDFICNPIENINGHATYAPYGLRKVEASLIRDGYSREDVVVAHPDY
                     IEQFIGPETQVVGTYEMDPLGMGPVTMTFTFGRKQMSYDEFYNRELHHKINAAKTKNG
                     SKAKVIAGASGTWQYNYDPAKIEEYGLYGIVEGDLGGIGPEIDGAGRRFFDALINGEM
                     ENANPFKKKEFKIEIKEFNRNDRNYHGRFIHYRDEPSIDEIPNIVNPSMHGMIEVMRG
                     CGRGCKFCDVTLRPLRYYPVEKVQKEIEINMKYGGLKNAWVHSDDIFVYGLNPRTTKN
                     MQPNREAIEELFKGIMATGIEHTNPTHGTLAGAIADERLIPNVSKIIRAGADNHIGIQ
                     CGFETGSIRLIGKYADRKLSPYKPIEWHWVVKTAVKTLNEHYWVPAFTLIMGLDNDET
                     PEDSWETIRLIHELETEQPDSKFTVTPLTFVPIGLLEKSEFFDIENTMDPPKLGVMYK
                     TWQHNLKYGIQKFMHKVGRNNKMKSLFFAGLARALGGVPLSAMEKFARSKSSEHEKVI
                     EKIKANYW"
     gene            complement(2768..3073)
                     /locus_tag="VHF08_01005"
     CDS             complement(2768..3073)
                     /locus_tag="VHF08_01005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067261.1"
                     /translation="MPDYFEIDRLIEDLAKIYSTACATTWFKITKNKQPSKDEFRKKV
                     AEFMKHFEYTLSTYPKTTEADQFRQYALNNLKTEIENVLAGNNKEVERRYKYYVDYS"
BASE COUNT         1118 a          542 c          653 g         1063 t
ORIGIN      
        1 cacggatgct acaaaaaaac agatagcaca acagcgcaga ttatttttta agatttgctt
       61 caaatgtggc ggaaagaatc caatttcgtc ttctagatgc agaaaatgcc atggcaccca
      121 aatgcgatta aagaatagat cattgggagt taaaaaataa ttctttactg aagtttttaa
      181 gtttgcgctt atacttcgta ggagcaatgt ttgacaggat aatgttcttg tttatactgc
      241 atcagcaaca acatgagttt atatgatggg aaaacgttat aatctttttt gtataccatt
      301 tgctattaga tatcttcatt aagatttagc ttacaaaaat tataaggcgg agaatacgtt
      361 tcatattcag catatagaaa aataatagat tttttctttg agtagcagaa cccatgttaa
      421 aatccattct attttaaact cctattattt tcaatgtatt taaaataatg tgtcttaaga
      481 taatatgaga tagtggttag aaaattgcaa agcttaaaat ctatccacct ttatctgcat
      541 actgattagg gacttagatt tatgacccat ccaaaggttg ttttaacagc ggaccggact
      601 ttaatgtctc cttatagggg aatctctcta gcatcgtttt tcggttgtgc acctgctctt
      661 gatactaata gaagtcatga ttccatttgg tatcatatac ttggtaacca agttactccg
      721 agaattctct ttgactttat atgcaatcca attgaaaata taaatgggca tgccacctat
      781 gcgccttatg ggctaaggaa agtagaggct tcgcttatac gagatggtta tagcagagag
      841 gatgttgtag ttgctcaccc ggattatatc gaacaattca taggaccaga aacccaagta
      901 gtaggaacat atgagatgga tcctcttgga atgggtcctg tgactatgac attcacgttt
      961 ggacgtaagc agatgtcata tgacgaattt tacaatagag aattacatca taagataaat
     1021 gctgccaaga ctaagaatgg cagtaaggcc aaagtgattg ctggtgcatc aggcacatgg
     1081 caatacaatt acgatccagc taagattgag gaatatggcc tttatggaat tgttgaagga
     1141 gatcttggtg gtatcggacc agagattgat ggcgcgggaa gaaggttttt tgatgcctta
     1201 atcaatggag aaatggaaaa tgctaaccca tttaaaaaga aagaattcaa aatagaaatt
     1261 aaggaattta atagaaatga taggaattat catggcagat tcatacatta tagagacgaa
     1321 ccctcaattg atgagattcc aaatattgtt aatccaagta tgcatggcat gattgaagta
     1381 atgcgaggat gcggccgcgg atgcaaattc tgtgatgtca ctctaagacc gttgagatat
     1441 tatccagtag agaaagttca aaaagaaatt gaaataaata tgaagtatgg tggtttgaag
     1501 aacgcttggg ttcatagcga tgatattttt gtctatggat taaacccaag aactaccaag
     1561 aatatgcaac caaatagaga agctattgaa gaactattta agggtatcat ggctactgga
     1621 attgaacata ccaacccaac ccatggcact cttgcgggag caatagctga tgaaagatta
     1681 attcccaatg tttcgaagat aattagagcg ggggcagaca atcacattgg tattcaatgt
     1741 ggattcgaaa caggtagcat aagattgata gggaaatacg cggacagaaa attatctccg
     1801 tataaaccaa tagaatggca ttgggttgta aagactgcag taaaaactct taacgaacac
     1861 tattgggtcc ctgcattcac tctgattatg ggtctcgaca atgacgagac cccggaggat
     1921 agctgggaaa caattagact tatacatgaa cttgaaacgg aacaacctga ttctaaattt
     1981 actgtcaccc ctctaacttt tgtccctata ggattacttg aaaaatcaga gttctttgat
     2041 attgaaaata ctatggatcc accgaagcta ggtgtcatgt acaaaacatg gcaacataac
     2101 cttaaatacg gcattcaaaa attcatgcac aaggtaggtc gcaataataa gatgaaaagt
     2161 cttttctttg ctggactagc cagagcgctt ggtggagtgc cactatctgc tatggaaaaa
     2221 tttgcaagaa gtaagagctc tgaacatgaa aaggtaatag aaaaaatcaa agcaaactat
     2281 tggtagaggc cgcaaatatt tatggcgtct ctcttctaac agtattgtct cttaactatc
     2341 tgttagaagc tccaatatgt gtcattattt tctcaaatta acacttttac aaagcttgat
     2401 tgcgtaaata acttctaggt tgcaggataa tatgaatttg tattactggt taaatgacta
     2461 tatggatgtg aaaaaatgtg aattctgttc acaggagttg ggatagatta aacaacttaa
     2521 taaatgcgga aacgtacctc tttatatact tccctgcttt ttgacggatg caaatatgtt
     2581 attaatgtat ataccattat gggtaaaaga tcaatagata tatgcgaata gactaacaaa
     2641 caagaataat ttatttatcc tgctcaatgg ttatggcatc tattttttat tgttcattta
     2701 tgtaatgaat aatgtcaagg gtttccatga tcatcatcag agtattaaaa tcttccaagc
     2761 agaagtatta gctataatct acataatatt tgtatctccg ttctacttct ttattatttc
     2821 cggcaaggac gttttcgatc tctgttttta ggttgttgag tgcatattga cgaaattgat
     2881 cagcttctgt tgtctttgga taggttgaaa gagtatactc aaagtgcttc atgaattccg
     2941 ctactttttt tctgaattcg tcctttgagg gctgtttatt cttcgtgatt ttgaaccatg
     3001 ttgttgcaca tgctgtggaa tatatctttg caaggtcttc gataagacga tcgatctcaa
     3061 agtagtctgg catagaatac taatccgttt aactaattga gaatcctata aatgatgcta
     3121 aaaaggctct gctactctgc tactttggaa gagaaggcac catttcctaa atcggcaaca
     3181 atttttattc tagaaatgtt ctttttcagc aattagaaat atcatgatgt tatataatac
     3241 tgcattcttt ttctagagct ttagtagatc tttaaagata tatctatgat gccatcaact
     3301 cttgctatca tatattaata ttctgattcg atataactca atagagataa tattaatgtg
     3361 gctcgttcaa aaatat
//
LOCUS       DATAAS010000068         2020 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2225325, whole genome shotgun sequence.
ACCESSION   DATAAS010000068 DATAAS010000000
VERSION     DATAAS010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2020)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2020)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2020
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2225325"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..289
                     /locus_tag="VHF08_01010"
     CDS             <1..289
                     /locus_tag="VHF08_01010"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2067262.1"
                     /translation="ITKIYLNLELYINNNNNQQDKIKTRHFGRIIFHSEDIDRLYSYM
                     KNNESISKMICFENEPTDAPWGERYFHIREPDGYQLSFAMPIKKKYQGHEQ"
     gene            629..772
                     /locus_tag="VHF08_01015"
     CDS             629..772
                     /locus_tag="VHF08_01015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067263.1"
                     /translation="MLKHVKGEHHKPIMKCHNCGMQFLHEKDRLHHIQEEKKKKIDLR
                     RHR"
BASE COUNT          767 a          285 c          256 g          712 t
ORIGIN      
        1 aattacaaag atatatctca acctagaatt atatattaac aacaacaata atcaacagga
       61 taaaatcaaa acaagacatt ttggcagaat aatctttcat agtgaagata tagatagact
      121 atattcatat atgaagaata acgaaagcat ctcaaagatg atatgttttg aaaatgaacc
      181 tacagatgct ccatggggtg aaagatattt ccatatacga gagccagatg gttatcaact
      241 atcatttgca atgccaataa agaaaaagta tcaaggccat gaacaataac tctttagatt
      301 aacacctacg ctaaccttga ctattttagc atattttatt cttcttttct gatattcacc
      361 tatagtatct aaataataca tagtataaca tgttcttgcc gtaaattata tttaaaatct
      421 ttctaagatt ctattttcag attgtaccat tttatttaga gatttttcac aaatattaca
      481 aatcatagct agaatatgag agagaaagaa aaagtatagt tatatcttat ataattgtat
      541 acatatatgt aaaagtatgg gtttcttgtt atatcataag aaaaaccatt gtgaagtatg
      601 tcatcaatca ttcgatagac atgaagagtt gcttaaacat gtcaagggag aacatcacaa
      661 gcctattatg aaatgtcata attgtgggat gcagttctta catgaaaaag atagacttca
      721 tcatatacaa gaagaaaaga aaaagaaaat agatctacgt agacacagat agaactcaat
      781 ttctcttatt tataagcact aaagatttac atctttaaat agtcaagata tcatgatcaa
      841 tatgcaatta agaacttttt ctatattata taactagtca tagcatcaaa ttgattttca
      901 catatatcct tgccctatct taccttatgt tatattcgga atacattatc acatcaatgc
      961 ttttttagcg caatatgtta ggaaagtgct gaacctagct atcggactaa agtttatttt
     1021 tatttcaata aggaaaattt ttcatatatt aaaggtctta gttttgattt tatttatcta
     1081 ttattattaa aggtgaagca agacctagtt aattatatat caattattat aaaatattgt
     1141 ttttagatct aatatcttta actttgtcct ttgtctatat actatcaaat aaatttgatt
     1201 catcaatcag aaaaagcttt ttctagtatt cctatagatg aaagtcattg tacaccacta
     1261 aatattatat tctaaccatt tttcttttgg tataccatct gtatatgaag taagcagcag
     1321 caattattgc aattgctata acaagtggtt gtaagaaata gatcagtaaa ccagctatta
     1381 tgattagtac agcaatgatt attatgtcaa atacacttaa atttcgtgcc aactgacatc
     1441 aatgttcatt ataacctatg aatacttgct atgatcattc tattcgataa tattatattt
     1501 cagactgaaa ggagaaaaag tggctgatag ctagccagac attcaattca tttcacacta
     1561 tgatgaaaga actattcaga aggagagata gctattaatt tcacattatt gctagtaata
     1621 caatcaaaaa ggtaattatc tacaaattga attgaattgc aaataacgca cttataattt
     1681 gcaagataat tataataact aaaatgttta taattttcta aatttctcta ttattatttt
     1741 tcttatttca agtattctag atgtactcaa tattatatac taaattgtta ttctagtata
     1801 ccatatagga taatattagt tacttttatg ggagtcaaaa tccgtcaact ttataatcat
     1861 agtaaaattg caaattaaat aaagaaggac acaacatcat attatagcaa aaattgtgga
     1921 taactaatat aaattactta agagctatca attaactcct ctgatgcact tttggtaata
     1981 tttacaatat actgtttagc tttcccagat acattttcta
//
LOCUS       DATAAS010000069         1699 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3846210, whole genome shotgun sequence.
ACCESSION   DATAAS010000069 DATAAS010000000
VERSION     DATAAS010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1699
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3846210"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(298..879)
                     /locus_tag="VHF08_01020"
     CDS             complement(298..879)
                     /locus_tag="VHF08_01020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067264.1"
                     /translation="MTIISDSYMRMILPEDISNRLSEFIADRQNFPFIRNDELMCIFY
                     LYGKKSGVRYDKEYSEVMNLAENTVIKLRRDIETYNDSPKLKLDSQFIRSKFINRELQ
                     VAIEEKKSVSKERILNDPVLISDCFAQHVSYYNQEYFFQLYGPLREYDLINEVRKYLL
                     GRMVMLGFNRKDEKSLPFQNAFIPLYIWIRDHM"
     gene            952..1251
                     /locus_tag="VHF08_01025"
     CDS             952..1251
                     /locus_tag="VHF08_01025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067265.1"
                     /translation="MSSLNDAGKKIYIIVHGQHQFVDQIKEKLLMKGFEKENMQLASL
                     DRAGNVSEYVAMIWPPMAPKEIVVNEIIDTNAHGGSGMGAWSSVSQKELYRIPLN"
BASE COUNT          567 a          274 c          272 g          586 t
ORIGIN      
        1 caatacataa ggataaatag aaaatttcaa tgtttacttt ctaggtagaa agaaaaggta
       61 aactaaacca tgttaccagt tggttcaatg tgtttattga ctcatataat aatagtatga
      121 ctcgttaagt taacagatcc cctaaggtat gacaatttat ttctgcatct actctaattt
      181 ctctattagt tagaagttag tatttccggt cttcaaatag aagctttcca ctcagtgttt
      241 tagtaacatc ggttcactta atgctggaaa tacattatta gacaatcatg catcgatcta
      301 catgtggtcc cttatccata tgtatagtgg tataaacgca ttttgaaatg gcaatgactt
      361 ttcgtccttt ctattaaatc ctaacattac cattcttcct aggagatatt ttcttacctc
      421 atttataaga tcgtattctc tcaagggtcc atataactgg aaaaaatatt cttgattata
      481 gtaggataca tgctgtgcaa aacagtctga tattaataca ggatcattta gaattctctc
      541 tttagagaca cttttttttt cttcaatagc gacttgtaat tccctgttga tgaatttgct
      601 gcgtataaat tgcgaatcca actttaattt aggactgtca ttatatgttt ctatatctct
      661 ccgtaattta attacggtat tctctgcaag attcataact tcgctatatt ctttatcata
      721 tctaactccg cttttttttc cataaagata aaaaatgcac atcagttcat catttctgat
      781 aaatggaaaa ttttgtctat ccgcgatgaa ttcagatagg cgatttgata tatcttcagg
      841 aagaatcatt cgcatatagg aatctgaaat tattgtcatg acttgatttt atttatttta
      901 tcttatcaat atgtttaaag gtatgtgatt caactaacat atgaaagtta aatgtcgtct
      961 ttgaatgatg ctggtaaaaa gatatacatt atagttcatg ggcagcatca gtttgttgac
     1021 cagataaaag aaaaactcct catgaaagga tttgaaaaag agaacatgca attggcaagc
     1081 cttgatagag caggaaatgt cagcgagtat gttgcaatga tttggccgcc aatggctcca
     1141 aaggaaattg ttgtcaatga aattatagac accaatgcac atggcggaag tggaatggga
     1201 gcatggtctt ctgtatcgca gaaggaactg tataggatac ctctaaatta aattgagtga
     1261 ttgctgacaa tttaagaaat ttttttgata gcctacaaaa acacacacat actatcgcaa
     1321 aaataagcag gcccaaatgt cttttgaaaa gcattattta acttactatt gatttctggc
     1381 acatctttcc actgttattt ggagtctggg aatacatcta gatatattaa atttgatcgc
     1441 tggagtatga taaaaaacct aaattgcgat aaagcataga gtattgaagc agaatctaat
     1501 ggcatactcc atgaatccac aaattctatt ataacatatc tatgcgctga gagaaattaa
     1561 tagcacatca atccataaaa tatctgtaat tatatactta ggtctgaaat cgtaatttac
     1621 ctaataaaat ctttattatt gatctttcat ttgcgattaa gtatataact ccatagtgac
     1681 aatggatata ttttgccac
//
LOCUS       DATAAS010000070         4820 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2226828, whole genome shotgun sequence.
ACCESSION   DATAAS010000070 DATAAS010000000
VERSION     DATAAS010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4820
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2226828"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            627..1622
                     /locus_tag="VHF08_01030"
     CDS             627..1622
                     /locus_tag="VHF08_01030"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX2067266.1"
                     /translation="MTIKRLHQYYIDKEFKTFNPQCILFDIDGVLVDVRKSYNIVIKK
                     TVDFILKYIIGDTVLKGIVNDDIILKFRQTGGFNNDTDTSYAIALAILVNPQKSIRST
                     REFLSFIAKNVDEGGIIAVEKFLSSYFHYTHIQRLKKILVYPAQLSNSMLATVFDEFF
                     YGPELFEKRHKIKPKYYFGKPLIENDKLLATRRTINYITKKFGSNIAIVSGRSKIAAE
                     YSLKPVFNVFNQRACIFLEDEEREYSKPNPYSIKKAMKIMNSKTAIYVGDSAEDLIMV
                     RRAEKEADIKIAFFGVYGCSTQPTLTARQFRKIGAEAIMENINILPNILNKVLIK"
     gene            1632..2234
                     /locus_tag="VHF08_01035"
     CDS             1632..2234
                     /locus_tag="VHF08_01035"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase"
                     /protein_id="HEX2067267.1"
                     /translation="MVCSATDERTAKTERITKETSVTVEVNIDGTGETTIKTGLPFYD
                     HLVTSIGKHANIDIILTAESKDRVIHHLVEDISIALSQTIDKALGNRSHIMRFGYAMV
                     PMDESLAYVTIDLVKRQFYVIQLKLYRDTIEGIPREDIEHFIRSLAQNLNACTHIIVE
                     YGENDHHKIESVIKAFAVALRMAASINQKSEGVPSTKGAM"
     gene            2234..2854
                     /gene="hisH"
                     /locus_tag="VHF08_01040"
     CDS             2234..2854
                     /gene="hisH"
                     /locus_tag="VHF08_01040"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEX2067268.1"
                     /translation="MVNVAIFDYGAGNLFSLKAALERNGAQNVIIIHDMKGLDKFDGL
                     VLPGVGNFDPAVKSIEPYKDIFIKSIEDFMPILGICLGMEMLFNHSEEGTRDGLKILD
                     GKVIILPKKKVKVPHMGWNNLEIIKKESKLLQGIKDGSWAYFVHSYLIVPENSSIVSA
                     TSQYGVNIPAIVEEGNLYGTQFHPEKSGKLGAIIMKNFLDVCSDLK"
     gene            2851..3561
                     /gene="hisA"
                     /locus_tag="VHF08_01045"
     CDS             2851..3561
                     /gene="hisA"
                     /locus_tag="VHF08_01045"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEX2067269.1"
                     /translation="MKVIPSIDLMNGNVVRLVRGDPANKVVYSDNPIETARKWEAAGA
                     DMLHVVDLNATLRTGINNNEIVFKIIDSVKIPVQVAGGIRSINAINEMLNKNAAKVVL
                     GTIAYKEPDSIRQIAKKKVEKLVISIDQNNGRVMIDGWREASSYGIVDAINLFMSMGI
                     RDFLLTSIDRDGTLNGPDVTTLSLASSFANSLIIASGGISSLEDIIRVRSAGCHSVIL
                     GKAVYEGKISIERVKAIA"
     gene            3563..4372
                     /gene="hisF"
                     /locus_tag="VHF08_01050"
     CDS             3563..4372
                     /gene="hisF"
                     /locus_tag="VHF08_01050"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEX2067270.1"
                     /translation="MALAKRIIPCLDVDNGRVVKGVHFAEVKDAGDPVEFAQKYIKQG
                     ADELVFLDITASQQGRETMRNVVRNVASVIDIPFTVGGGIKRLEDARDILLNGADKVS
                     INTAAVGNPELIYELMSIFGKQCVVVAIDAKRNYGKAGKNFFYDGVKNKKEFWFEVRI
                     YGGKEGTGIDAIEWAKKVEYLGAGEILLTSIDSDGTENGYDIMLTKAICQATRIPIIA
                     SGGCGSPKHMLEVFEKADVDAALAASIFHYEKSTIDKVKKYLKKNGIKIRL"
     gene            4477..4626
                     /locus_tag="VHF08_01055"
     CDS             4477..4626
                     /locus_tag="VHF08_01055"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF013013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEX2067271.1"
                     /translation="MNKVSKIVGLGGVFVSIAKTLASARVSIDMVAGPTELVVYANAV
                     IKRLY"
BASE COUNT         1756 a          676 c          935 g         1453 t
ORIGIN      
        1 tagaaaaggt agtataaaga acaatccatg taatttgatt ctccacatct aatatcaatt
       61 atgtattgta tgttttattg atcacatgct caaaaattga tttaataatg tttatcatta
      121 tcaaaaaaac ttatttggaa gaatgttttt ctcttatatg attattaaga ttaagtattt
      181 tagacataaa tttatttcta catatatcta cacaaaaagg tccaataaaa aaaacaatat
      241 ataaattata ttttatatgg ataatatgat cagatatcat ggaaaaaatg agattgctgg
      301 ataataataa tccaggaaca taaatatcgc ttattcaaat ccgttatagt tgctcaatgg
      361 gttaattgat tactttaagc tttattctat attctactct attatactga tcctttagaa
      421 caaggattat tctgttactg agtattacat gtgccataaa ccattcaaaa agaatatata
      481 ttattcttaa cgctgttctg ctaaacatat ctattgatta atgttctcac agccagaccg
      541 cttcgtgttt atataaattt atattgtcta tgtcgtacaa ttcttaaagt tatcaattat
      601 agattcaaat acaataaaac tggcagatga caataaagcg gttgcaccaa tattatatag
      661 ataaagaatt caaaacattc aatccacaat gtattctttt tgatatcgac ggagtattag
      721 tagacgtaag aaaatcttac aatatcgtaa ttaaaaaaac tgtagatttc atacttaaat
      781 acataatagg cgatacggtc ctaaaaggaa tagtcaatga tgatataatc ctaaagttca
      841 gacaaacagg tggctttaac aatgacactg atactagtta tgctatcgca ctcgcgattt
      901 tagtaaatcc acaaaaaagt attagatcaa caagagagtt tcttagtttt atcgctaaga
      961 atgtggatga aggcggtatt attgctgtcg aaaaatttct atcttcttat tttcattata
     1021 cacatattca aagattaaaa aaaatattag tttatcctgc ccaacttagc aacagtatgc
     1081 ttgcgacagt ttttgatgaa tttttttatg gaccagaatt gtttgaaaaa cgccataaga
     1141 ttaaaccaaa atattatttt ggaaaacctt tgatcgaaaa tgataagctt ttagctaccc
     1201 ggcgtacgat taattatatt acgaagaagt ttggtagcaa tattgctatt gtatcaggca
     1261 gaagtaagat cgcagcagaa tattcactga aaccagtatt caatgtattt aatcaaagag
     1321 cttgtatatt tcttgaagat gaagaacgtg aatacagtaa gcctaatcct tactcaataa
     1381 agaaagccat gaaaataatg aatagtaaga ctgcaatata tgttggagac tcagctgaag
     1441 acttaataat ggtgagaaga gcagaaaaag aagcggatat caaaatagct ttttttggag
     1501 tttacgggtg tagtacacag cccacattaa ctgcaagaca attcaggaaa attggggcag
     1561 aggcgataat ggaaaatatc aatatattac cgaacatatt aaataaagta ttaataaaat
     1621 agtatttatc gttggtttgt tctgctactg acgaaagaac tgcaaagacg gaaagaatca
     1681 ctaaagagac ctctgttaca gtagaggtga atattgacgg tacaggagag acgactataa
     1741 aaacaggtct tccattttac gatcatcttg ttacatccat tggtaaacat gccaacatag
     1801 atattattct aacagccgaa tcaaaagata gagtcataca tcatctagta gaagatattt
     1861 caattgcact ttcacaaact atagacaagg cacttggtaa taggtcacat atcatgcgat
     1921 tcggatacgc aatggttcca atggatgaat ctttggcata tgtaacaata gatcttgtga
     1981 aacgtcaatt ttatgttata caattaaagt tatatagaga tacaatcgaa gggatcccaa
     2041 gagaagacat agaacacttc ataagatcgc ttgcacagaa cttgaatgca tgtacacata
     2101 taattgtcga atatggagag aacgatcacc ataaaattga atcagtaata aaagcatttg
     2161 cggtagcact cagaatggct gctagtatta atcagaaaag tgaaggagta cctagtacaa
     2221 aaggtgcaat gtaatggtta atgtagcaat atttgattac ggtgcaggta accttttcag
     2281 tttgaaggcg gctttggaaa gaaacggagc acagaatgtc ataattatac atgatatgaa
     2341 gggtcttgat aaatttgatg gtttagttct accaggagta ggaaatttcg atcccgcagt
     2401 aaaatcaatt gaaccttata aagacatatt cataaaatct attgaggatt tcatgccaat
     2461 acttggcatc tgtttaggca tggagatgtt attcaatcat agcgaagaag ggacacgtga
     2521 tggtcttaaa attctagatg gcaaagtaat aatattacct aagaaaaaag tcaaggttcc
     2581 acacatgggt tggaacaatc ttgagataat caaaaaagaa agtaagttat tacaaggtat
     2641 caaggatgga tcatgggcat attttgtcca ctcatatttg atagtgccag aaaatagcag
     2701 tatagtttct gcaacttctc aatacggagt taacattcca gcaatagttg aggaaggaaa
     2761 tctatacggt acccaattcc atcctgaaaa atctggcaaa ttaggtgcaa ttataatgaa
     2821 aaactttctt gatgtgtgtt ctgatctaaa atgaaagtta taccatcaat agaccttatg
     2881 aatggaaatg ttgttagatt agttagggga gatcctgcta ataaagtggt atatagcgat
     2941 aatcctatag aaactgcaag gaaatgggaa gcagctggtg cggatatgtt acatgttgta
     3001 gacttaaatg ctacattacg aactggcatt aataacaatg aaattgtttt taagataatt
     3061 gattctgtaa aaattcctgt tcaagtggca ggtggtatta gatcaattaa tgccataaat
     3121 gagatgctta acaaaaatgc agctaaagta gttctaggaa ccatagctta caaagaacca
     3181 gattccatac gacagatagc caagaaaaag gttgaaaaat tagtaatttc aatagatcaa
     3241 aataatggca gagtcatgat tgatggctgg agagaggctt ccagctacgg aattgttgat
     3301 gcaattaatc tgtttatgtc aatgggtatc agagattttt tgctaacaag tatagacaga
     3361 gatggaacat taaatggacc tgacgtcacg acattgtctc ttgcaagcag tttcgccaat
     3421 tcactaataa tagcaagtgg aggaatttcg agtctagagg acattattag agttcggagc
     3481 gcaggatgtc actctgtcat actaggtaag gcagtttatg aaggtaaaat aagtatagag
     3541 agggtaaagg ctatagcata aaatggcatt agcaaagaga attattcctt gtttggatgt
     3601 tgataatggt cgcgtagtaa agggagtcca ttttgcagaa gtaaaagatg ctggtgatcc
     3661 tgtagaattt gcacaaaaat atatcaagca aggagctgac gaacttgttt tccttgatat
     3721 tactgcatcg caacaaggca gagaaactat gagaaatgtt gttcgaaatg tagcgagtgt
     3781 tattgatatt ccctttactg tgggtggagg gataaagagg ttagaagatg cacgtgatat
     3841 tttattgaat ggtgcagaca aagtatctat taatactgct gcggtaggaa atccagaatt
     3901 gatttacgaa ttaatgtcca tttttggtaa acaatgtgtg gtagttgcaa tagatgctaa
     3961 aagaaactat ggaaaagctg ggaagaattt tttttacgat ggagttaaaa ataaaaagga
     4021 attctggttt gaagttagaa tttatggtgg aaaagaagga acaggaatcg atgcaataga
     4081 atgggccaag aaagtggaat atcttggagc aggcgagatc cttctaacta gtattgactc
     4141 tgatggaaca gagaatggat atgatattat gctgacaaaa gcaatttgtc aagcaacgcg
     4201 tatacctatt attgcgtctg ggggttgcgg cagtccaaaa catatgctag aggtttttga
     4261 aaaggcagat gtagatgcag cattagctgc atctattttt cattacgaga aatcgactat
     4321 agataaagtg aaaaaatacc taaagaaaaa tggcataaag attagattgt aataatcgca
     4381 ttatcaccaa actactcaat ctaataaaat attatcttta gaactaaata ggtaatttga
     4441 gaatatatat ttcatgaaca agttattatc tttagtatca acaaagtaag caagatcgtt
     4501 ggtctaggag gcgtgtttgt ctctattgcc aaaactcttg cttccgctag agtctcaata
     4561 gatatggttg ctggtcctac tgaattagta gtatatgcaa atgcagttat aaagagatta
     4621 tattgacact gggcaatgct ctgtagtaat cactacattt ttaaattcgt aattaaaata
     4681 attattggtt ttaaagttag gcaaaagaaa agtactcaat gaagcagatc taaaagaaat
     4741 ggtcatgcca cagaaaggag aaatgcttgg ccgtgttatc aaacttgttg gaggggataa
     4801 tatcattgtc aagtgtactg
//
LOCUS       DATAAS010000071         1854 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2228191, whole genome shotgun sequence.
ACCESSION   DATAAS010000071 DATAAS010000000
VERSION     DATAAS010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1854
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2228191"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..965
                     /locus_tag="VHF08_01060"
     CDS             <1..965
                     /locus_tag="VHF08_01060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067272.1"
                     /translation="PSESRIVEALIWRTDFPYFKQKKAQEMFEQLVSHLDKNGYDSIK
                     IKLLAEILWLADLAVTYMGSDPIRAWDRVTNLYDELYLPKFEAVSRTDAFFSDFVEIE
                     LFKELIRMRHFPDIFRQRWNLVYQFFHEGNPSTQLNRTITKARNLYLRINLELEMRRG
                     EMLQNIAINNWAEYFIGIGKDQSEVLRAKSKFAELDPPNASAFWGDTHKLVPNIMDKS
                     IDNFLIVLPQNFRPLNSIEEKLSFRSLLAIMVSKLTANGTLQILTDLEKDSVKFKEII
                     AIIVDTGFQLDLNYTGKTYFPKDWKDPDFINEKTRQILIFRSEK"
     gene            1280..1385
                     /locus_tag="VHF08_01065"
     tRNA            join(1280..1294,1326..1385)
                     /locus_tag="VHF08_01065"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1346..1348,aa:Arg,seq:cct)
     gene            complement(1639..>1854)
                     /locus_tag="VHF08_01070"
     CDS             complement(1639..>1854)
                     /locus_tag="VHF08_01070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067273.1"
                     /translation="KQSHAYRIMLLDAGHLGQTFHLVCTKLKLAPFTFAATNDKEIEK
                     ELCIDGVSEIPVYVASTGVPAKQTRQQ"
BASE COUNT          612 a          305 c          349 g          588 t
ORIGIN      
        1 gtcctagtga aagcagaatt gtagaggcat taatctggcg tactgatttc ccatatttta
       61 aacaaaaaaa agctcaggaa atgtttgagc aactggtcag ccatcttgat aagaatggat
      121 atgattctat taaaataaag ctacttgcag agattctatg gctagctgat cttgccgtaa
      181 cttacatggg ttctgatcct attagagcat gggatagagt tacaaatctt tatgatgaat
      241 tatatcttcc gaaattcgaa gcagtttcta gaactgatgc attcttttcg gattttgtgg
      301 agatcgaact ctttaaggaa ttaattcgca tgcgacactt tcctgatatc tttagacaaa
      361 gatggaattt agtatatcag ttcttccacg aaggcaatcc ttcaacacaa ttgaatagaa
      421 cgatcaccaa ggcgagaaat ttgtatctta ggattaatct cgaattggaa atgcgaaggg
      481 gcgagatgct acagaacatt gcaataaata attgggcaga gtattttatc ggcattggaa
      541 aagatcagag tgaagtattg cgagcgaagt ctaagtttgc cgagctggat cctccaaatg
      601 cttcagcttt ctggggagat acacataagt tagtacctaa tattatggat aagtcaattg
      661 ataatttcct tatagtgtta cctcagaatt ttaggccact taactctata gaagaaaaat
      721 tatcattcag atctttgctt gcaattatgg tatcgaaatt aacggccaat ggaaccctgc
      781 agatactaac tgatttggaa aaagatagtg tgaaattcaa ggaaataata gcgatcatag
      841 ttgatacagg ttttcaatta gatctcaatt atacaggaaa gacatacttt ccaaaggatt
      901 ggaaggatcc tgattttatt aatgaaaaaa cacgccaaat actgatcttt cgttctgaaa
      961 aataatcata attttaggta taattataca gcacagagca accaacttcc ttatatcata
     1021 cttgttacct tcaattccta ttataggata gtaagtgtag gcagtttagg gtctggttga
     1081 cggtatttct gcatattgtt taaaaattct ggtatacaca catatcataa tcccgggcta
     1141 aagcaaatct catggattta tgaaggaaac agagagatag gttaaaaata ttagttatga
     1201 aaagtcctca ttactaaaaa tgaaatatta ttctttagta tcaatattta aatttggccc
     1261 tcttgaattc aaaatgttag ggctcgtagc gcagactatt caaataacaa tacaaatagg
     1321 cgtaaaatgg atagcgcaga cgcctcctaa gcgtcaggtc gagggttcaa atccctccga
     1381 gcccgcatca atctttacac tttatttaag cccaatacta tacttatgat gaatatagtt
     1441 gtctgtaatt gaagaataag accctatgac ttgtcttctt atatgcgcta tatttcaatg
     1501 tgtgatcatg tgactatgtg actgcattaa tgacacgcta taatcaattt ccactccaga
     1561 gagacaaaag aattttctat agctttcata gaatacgaat atcttatatt gttagattaa
     1621 agtctgaatt gacaaatctt attgttgtct agtttgttta gctggtacgc ccgttgatgc
     1681 tacatagaca ggaatttctg aaacaccgtc gatacatagt tctttctcga tttctttatc
     1741 atttgtagca gcaaaggtga aaggagcaag tttaagcttt gtgcatacaa ggtggaatgt
     1801 ttgacctaaa tgtcctgcat caagaagcat aattctatat gcatgggatt gttt
//
LOCUS       DATAAS010000072         2623 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4391955, whole genome shotgun sequence.
ACCESSION   DATAAS010000072 DATAAS010000000
VERSION     DATAAS010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2623)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2623)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2623
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4391955"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(135..1301)
                     /locus_tag="VHF08_01075"
     CDS             complement(135..1301)
                     /locus_tag="VHF08_01075"
                     /inference="COORDINATES: protein motif:HMM:NF017773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2067274.1"
                     /translation="MRGAIILLIVIIAVSSFYSLSLLKLDNIYASTDSVTNTTSEKSI
                     PVYMITTRGDLNFPIEESGNGYNDKYQFGDINQLKSQCPAEIAIFVHGWGNDEFKAKE
                     RLDRVKMSLENSNYSITLIGLSWDSNKLWDTAKTIAKENGPKLANFIIGYIDTCKHQH
                     NKDTNIRLMSHSIGARVLLSTLDDLHTNPTWNNNDYKIASVHLMGAAVDDGEVSKNPL
                     DIDGDSAIKHAYGKAIQDEVVRFYNLYNPEDNMLQPQPFQQDGYIYQIYPFFENDLAL
                     GQSRRDTTIATRDQVSTPPYYEINVQNQILAIRNADAMEDLHYLYCGFTTCAVTLAGS
                     YDFGLCGGFTSSYVCKVDIGDNHGGYIGFRDSNNINQLKDDGAINIVVKNWKNP"
     gene            complement(1344..1676)
                     /locus_tag="VHF08_01080"
     CDS             complement(1344..1676)
                     /locus_tag="VHF08_01080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2067275.1"
                     /translation="MKILLSLQRYEEAISYFDKALEIDQFETTILRNNSIAKLTVGDK
                     ESSLRLLKQAIDKDPTIREFAKYEKRFERLKDDLHLENLYMVIIKQRYYNNLNEILHG
                     ILGLIRQR"
     gene            complement(2362..>2623)
                     /locus_tag="VHF08_01085"
     CDS             complement(2362..>2623)
                     /locus_tag="VHF08_01085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067276.1"
                     /translation="VAQDSELRHLARKYVKEYALLDTLGNAQENAEIMRKLVKLIHKQ
                     AGAMEKETGVESPMLDDNEVRQYIDLVIRETRVKKDDRTVGT"
BASE COUNT          819 a          479 c          419 g          906 t
ORIGIN      
        1 ttagaatagt atagaatagt atagaagata aagagaaatt ttcagataat ccttttcttt
       61 ttgcaaggta aaattatatt tattaatttc aatatgaagg taaatatttt taaaataata
      121 ggatgtttat agttttaagg atttttccaa ttcttaacta ctatatttat tgccccatca
      181 tctttaagtt gatttatatt gttcgaatct cggaagccaa tatatcctcc atgattatct
      241 cctatatcaa ctttacatac ataactcgaa gtaaaacccc cacatagacc aaaatcataa
      301 ctacctgcta gagtaactgc gcaagtagtg aatccacaat aaagataatg caaatcttcc
      361 attgcatcgg cattgcgaat agctagtatt tgattttgaa catttatctc ataatagggt
      421 ggtgttgaga cctgatctcg tgtagctatt gttgtatctc ttcgactttg tcctaatgct
      481 aaatcatttt caaaaaaagg gtaaatctga taaatataac catcttgttg aaatggttgt
      541 ggttgaagca tattatcttc aggattatac aaattgtaaa atctgactac ttcatcttga
      601 atggcttttc cataagcatg ttttatagca gaatcgccat cgatatcaag aggatttttt
      661 gatacttccc catcatcaac agctgccccc attaaatgaa cagatgctat tttataatca
      721 ttattgttcc atgttggatt cgtatgaaga tcatctaaag tactaagaag tactctagct
      781 cctatagagt gactcattaa tctaatatta gtatctttat tatgttgatg cttgcaggta
      841 tcgatataac caataatgaa atttgctagt tttggtccat tctctttggc tatagttttg
      901 gctgtatccc agagcttatt agaatcccaa ctcaaaccaa ttaatgtaat gctgtagttg
      961 ctattctcta atgacatttt gactctatca agcctctctt ttgccttaaa ttcatcattt
     1021 ccccatccat gtacaaaaat tgcaatttcc gcaggacatt ggctctttaa ttgattaata
     1081 tcaccaaatt gatacttgtc gttataacca ttacctgatt cttctatagg aaaattgaga
     1141 tctcctctag ttgttatcat atatacagga atagattttt ctgatgttgt attagtaaca
     1201 gaatcagtac tagcatagat attatctaat ttcaacagac ttaaagaata gaatgacgat
     1261 actgctatta tcactattaa taatattata gctccccgca tgtacaagcg ttctgttcct
     1321 tttcttaatt agcttttctt ttctcatcgt tgtcgtatta atccaagaat accgtgtaga
     1381 atttcattca aattattgta atatctctgc ttaataatta ccatatacaa gttttctaaa
     1441 tgtaggtcat cttttagtct ttcaaaacgc ttttcatact tagcaaactc tcttatagtt
     1501 ggatccttgt caattgcttg tttcagtaat ctcagagagc tttctttatc gcctaccgtc
     1561 aatttagcaa tagagttatt gcgaagaata gtggtttcaa actgatctat ctctaatgcc
     1621 ttatcaaagt agcttatagc ttcttcatat ctctgaagtg ataacagtat tttcaaaggt
     1681 tctggccagt ataagattta ctttgaattt cataaaatga aatttactag ctaacatatc
     1741 cttataagaa ataaggagac agggtatttt gttggggaaa aaatataggt ggcataaatt
     1801 gcatgactga gagcgagaag cgcagcgcac aaaaagttga tcctttctta tataatatta
     1861 ttgagtgtat gtgtgaacag ttcaggcccc acaagagaaa agactgttaa agagcctaca
     1921 tacggttgta gcaactgcga tagaatcaca aaataaggcc aattccccta cattacagaa
     1981 gattttacta tatgcagccg ctgctgtgaa gaagataaag cgtggaaggt attaagcgag
     2041 aaagctaaac tcatgagcga aggatatagc gaagaggaag cattgaagaa agcaatcgat
     2101 gaatttggta aggatctacc tgacatgcgg gatggcgaag atctaacgta gtccactcac
     2161 cactgcaacg ccactccatt tttgcgttat aacgttacgt gtatttcgga tctcgatcaa
     2221 atgaaaacaa agtaacaagt caatcttcaa tatcttactc agcacaaggc aacattatat
     2281 cagagcacag gttagcttta tcgctttttg gaatatgatc aaatccctct ttgtgtcaag
     2341 cattagccac taagcttaaa gctaggtgcc gactgttctg tcatcctttt ttactctagt
     2401 ctccctaatt accaagtcta tatattgtct aacttcgtta tcatctaaca ttggagattc
     2461 tactcctgtt tctttttcca tagcacctgc ttgtttatgg attagtttta caagctttcg
     2521 cataatctct gcgttctctt gtgcattacc taaagtatct agcagagcat actcctttac
     2581 atattttctg gctaaatgac gcaattctga atcttgggcc act
//
LOCUS       DATAAS010000073         3259 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_69305, whole genome shotgun sequence.
ACCESSION   DATAAS010000073 DATAAS010000000
VERSION     DATAAS010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3259)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3259)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3259
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_69305"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(612..1532)
                     /locus_tag="VHF08_01090"
     CDS             complement(612..1532)
                     /locus_tag="VHF08_01090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-binding protein"
                     /protein_id="HEX2067277.1"
                     /translation="MSSERIVSFLPSATEVLYEIGAGDQIFGVTHECKFPESAKRKPK
                     VINSSFDPAKMNSKEIDNKIVELMQSGRDIYVIDDRILKEAKPDLIVAQGVCEVCSPF
                     TKEIKRAISILDYKPDVLILDPHDLDDILISIMDVAERVGRIKEGRKLVVSLQNRIDS
                     IRIRPKENKPKVLCIEWIDPFFAAGHWIPQMVEIAGGINGLGSYGKPSYRIGIDEIIK
                     FDPDKIILMPCGFDIDRTLIEFEQAKISNKWKSLQAVQNNEIFAVDAGAYFSKPSPRT
                     ITGLEILAKIIHPDKFLDIIVPTNSFIKIK"
     gene            complement(1957..2550)
                     /locus_tag="VHF08_01095"
     CDS             complement(1957..2550)
                     /locus_tag="VHF08_01095"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEX2067278.1"
                     /translation="MDLKYPINTISKMLKNAPIGWKVNSVKKVYSNELIELYEDTLDL
                     KGQEKIYIRGIRKDYSTIVPFISKDEILMIKSYRHLVDSIQIEVPSGYIDEGETPKEA
                     AIRELREETGYAAKDIVSIGHYTLDYSMFEQRGNLFVAYGMVKEGLQSLGIMEKIDIE
                     IITIKEVKQLLFEGKILNAASVVALYRALHFHEHQSK"
BASE COUNT         1034 a          540 c          484 g         1201 t
ORIGIN      
        1 tgtgtttcat ctactgcatt cctaacatta ttctttgcct catcaaaagt tctattgatt
       61 atcttttttg ttgttgtatt gttatccttt atagtgtagt tcttgacatc attatcttca
      121 tctgtagatc ctgtaggcat acgccttata ggcgaacatt acagttaaac cttgttcata
      181 aaatgttatt atgggaataa taatacaact ttattgttgt tcttagtata ccatcatgac
      241 ataatcttct ccttcagata caccctaggc catatacctt aagataatgt aatatccaag
      301 ccagtggttt tattcagata tgttttttgt tattaacata tagacttgaa agcaaacatg
      361 gtatatgtgg ccaacagtga tcctgataat gtctctacga tagatggctt aacgattaag
      421 attgtagata tcgttaccct aagctataag ccatgagata tttctcaatc caatttcaaa
      481 cacaatatat aagtgaccta actcttacat ttttgtgttt cagaaaagat tttttattta
      541 gaaagagtta ttgaagaggc gtaatttatc taaccatcac gggatgatag ttggataatt
      601 gcagatacat tttactttat ctttataaaa gaatttgtcg gtactattat atccaagaat
      661 ttatccggat ggattatttt tgctaagatt tcaagccctg ttattgttct tggtgaaggt
      721 ttactaaaat atgctcctgc atcgacagca aagatttcgt tattttgaac agcttgtagg
      781 gatttccatt tattactaat ttttgcttgt tcgaattcaa ttaatgtcct gtcaatatca
      841 aaaccacaag gcattaaaat gattttatct ggatcaaact ttatgatctc gtctatacca
      901 atgcgataag atggttttcc ataagaacca agtccattaa ttcctcctgc aatttctacc
      961 atttgtggta tccaatgacc tgcggcaaag aatggatcta tccattcaat gcaaagaacc
     1021 tttggtttat tttctttagg tcttattctt atactatcga tgcgattttg caaggatact
     1081 actagttttc gaccttcttt tattctacca actcgttctg ccacatccat tatacttatt
     1141 aaaatatcat ctagatcatg cggatcaaga atcagaacgt ctggcttata atctagtata
     1201 gagatagctc tcttaatctc tttggtaaat ggagagcaaa cttcacaaac accttgtgca
     1261 acaatgagat cgggttttgc ttcttttaag atccgatcat ctattacata tatgtctctg
     1321 ccagattgca tcagttctac aattttatta tcaatttctt tactgttcat tttagctgga
     1381 tcgaaagaag aattgattac tttgggtttt cttttagccg attcaggaaa cttgcattcg
     1441 tgggttacac cgaatatctg atctccagca cctatttcat atagaacctc agtagcactg
     1501 ggcagaaatg atacgatcct ttctgaagac actagattct aaaatattaa aggaaaattt
     1561 aaagttcact ataaaatatt aggataacat cttaaaagtc atcatcgata taatgtaaag
     1621 attttctcat catcttgtat gaggttcaga aatatgttga aaatgatata accagaatac
     1681 aagaatacaa gtatcaaata aatcataccg attaggtaaa tctaatttcc tgttataaat
     1741 tggcctagct agatctttac ccagacggca ttgatatcaa aaatgctcca tcatgatagt
     1801 ggacatcttg aaacagtcta ggataaacag ttgaaaagtt gaatataagg atggttttga
     1861 ttaaacaaga ataacaagac atttctaatg gttttctcct cttacaatat ttttgtttaa
     1921 gcaagaatat gggagagtag tattcaaatc ttaatattat ttggattgat gttcatgaaa
     1981 atgtaatgct ctatataatg caacaacaga tgctgcattt agtatctttc cttcaaaaag
     2041 tagctgtttg acttctttta tagtaattat ttcaatatct attttttcca ttatgcctaa
     2101 ggattgaagt ccttctttga ccattccata tgcaacaaaa agatttcccc tctgctcaaa
     2161 catcgaataa tcaagtgtat aatgacctat agatactata tcttttgcag cataacctgt
     2221 ttcttcccta agctcacgta ttgctgcttc tttaggagtt tctccttcat ctatataacc
     2281 agatggtact tcaatttgaa tagagtctac caagtgtctg taacttttga tcataagtat
     2341 ttcgtctttt gaaatgaagg gtacaatggt tgaatagtct tttctaattc ctctgatgta
     2401 tattttctct tgtcctttta aatcaagtgt atcttcatat agttcaatca actcattaga
     2461 ataaactttt ttcactgaat ttactttcca tcctattgga gcattcttga gcattttaga
     2521 tattgtattg atgggatatt taagatccac ttaaagtcta gttaacaaat ttctgttggc
     2581 tgattgctca tgtaccattt atcatacttt taataggcgt aaaaataaca ataacagttg
     2641 tcttaagtca atgcatttac ttatatgggt ggaggaatgt ctcctttgac ttggggcatc
     2701 ctgaaatcgt tcttgctttc attaaatatg ttttatatag ttctatcttc gtaatgcata
     2761 tgcattaggc agtattcctc atccactttt tcgttaattg ccaaatcttg ttatgaagat
     2821 cgaacaattc aaaaattggt attgcgattt tacaaaatga caaaaattac acagaatagc
     2881 agacataata ctatagaatt aaataataaa tttaaaaaga aattattaaa attaaaaaat
     2941 gaaaaatgtc atagcttaat ttgatatcaa tgcctgtttt aatattgact ctcctcatca
     3001 cttctaattc ttcttgcatc aatcaatgac tatttcattg ctagttttat taaagtacat
     3061 gataatactc tttgtttttg taattctagt tgtatattag gagtggttaa acaaattacg
     3121 agtaaaatag cgtcttgttg tatatggtat atcagaagag atcatatatt atctggttgt
     3181 ataatttagc tattgcaaaa catatgtaaa tatacacatg ccatctgaac aaacttaaca
     3241 gttcattgcc taggaaaat
//
LOCUS       DATAAS010000074         3233 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_610676, whole genome shotgun sequence.
ACCESSION   DATAAS010000074 DATAAS010000000
VERSION     DATAAS010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3233
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_610676"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..359)
                     /locus_tag="VHF08_01100"
     CDS             complement(<1..359)
                     /locus_tag="VHF08_01100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067279.1"
                     /translation="MSIEGRLINGWLPFIFAKFICDQLQIVRDILLVVDTGTATTTIN
                     EFDARQMKVDYSKLTKYQNSLGIGGSAESYLADSCHLYFGEGIESVDVKPVKFLRQSN
                     VEKVDQERYPSLLGMDVL"
     gene            475..1035
                     /locus_tag="VHF08_01105"
     CDS             475..1035
                     /locus_tag="VHF08_01105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067280.1"
                     /translation="MTSGKYFNKGVKALDSPHVGHVVRETDDKIVVFGGGDDRYDIPK
                     SEIRFTSGNVLIDLPMYEIAKRYKVSREEPLPTGKATKDPWTRTENIDLAAYEREYPK
                     SLFNKGVRTDNADHVGHVVKETDDKIVVFGHYDYRFDIPKSEIVAAGRNVIVGIDFPE
                     LLKYKVDRNAPLPTGEPIDKLAEEEQ"
     gene            complement(1345..2007)
                     /locus_tag="VHF08_01110"
     CDS             complement(1345..2007)
                     /locus_tag="VHF08_01110"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2067281.1"
                     /translation="MSDLLHPRDLGVIVRNTQPEDIPKIIDLQEESFPYLARYGNIWH
                     PQELESHLRIFPQGQFVAVEPDGMVVGSASTLIVSLNPEYAEHTWKEITADGRFTNHN
                     SNGDSLYGADISTHPKHRHEGIGGMLYDARKELAAKLNLRRMIAGGRLFNYSEYADRM
                     SPSEYAHKVIKGELKDPVLSFELDNGFRFIKILPNYLDDVRSLNYASFIEWLNPRYQQ
                     NR"
     gene            2185..3033
                     /locus_tag="VHF08_01115"
     CDS             2185..3033
                     /locus_tag="VHF08_01115"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2067282.1"
                     /translation="MINREREYQMPLIIDCHVHLNNYYDQISKTGKKFLSLEERLNSL
                     IDSMHDNGIEYSLILSSYKVDVDRPSTSSIIDITKKYDNKLGVVAGFTIDNHTDEDLK
                     NCREWLKDGIIKGIKLYCGYEHYYPSDQRYQRVYDMCIEYGSPIMIHTGDVFLKTAKI
                     KYSHPLNIDDVAVDNPELKIVMCHLGNPWITDCQEVLYKNRNVYADISGLIIGNFTPS
                     NEIYYMSKIKELLTYVSEPHSLLYGSDWPISSISSYLSFIQKLELNQESLGLLMFKNA
                     KSVFAL"
BASE COUNT         1065 a          565 c          591 g         1012 t
ORIGIN      
        1 agtacgtcca tacctaaaag acttggataa cgctcctgat caactttctc aacattactt
       61 tgccggagaa acttgacagg tttgacatcg actgattcta ttccctctcc aaaatacaaa
      121 tggcatgaat cagccaagta tgattcagct gagccgccaa tacctagaga attttgatat
      181 tttgtcaatt ttgaataatc tactttcatt tgtctagcgt caaattcatt tatcgtggta
      241 gtagcagttc cagtgtctac gactaggaga atatctctaa caatttgaag ttggtcacaa
      301 ataaattttg caaatataaa tggtaaccag ccatttatga gacgtccctc tatactcaat
      361 tatatcttat cttgaagagg acctctgggg aattaaattt agtgattaaa aatcttttat
      421 aatcgcttga aaagataagt attgttaaat agtctcttca cgtaattata taatgtgact
      481 tcaggaaaat actttaacaa gggagtgaag gcacttgatt cgcctcacgt aggacatgtg
      541 gtaagagaaa cagatgataa aattgtggtt tttggtggtg gagacgatag atacgatata
      601 ccaaaatcgg aaatccggtt tactagcggc aacgttttga tagacttgcc aatgtacgaa
      661 attgcaaaaa ggtacaaggt tagcagagaa gagccgctgc caacaggaaa ggcaacaaaa
      721 gacccttgga caaggaccga gaacattgat ttagcggcct acgagaggga gtacccaaag
      781 tctctgttca acaaaggtgt gagaacagat aatgcagacc atgttggaca tgtggtaaaa
      841 gaaacagatg acaagattgt agtcttcgga cattatgatt atcgatttga tataccaaaa
      901 tcggagatag tggcagcagg cagaaatgtt atagtgggaa tagactttcc tgagctattg
      961 aaatataaag tagacaggaa tgcaccgttg ccaacaggcg aaccaataga caaactggct
     1021 gaagaagagc agtagtaagt cataatatcc tcactctttt ctcttttatt aaattattat
     1081 tcacgctgaa tcctttctta tttcgctcat ctgaatattt ttggtagcat tatgatgctc
     1141 cgaccataat gttgagataa ctctcaatca tgctcgagag caaggtcttg actacggcta
     1201 tatgggggaa gtattagacc atgtactact tcctatcatg tctttttctt atcaaaaaga
     1261 tatgagaaaa cttaaagagt tcgagagtca aaggcctctc taaatttcaa gtaaactgca
     1321 ggagactttg acaattactg attattagcg attttgctga tatctaggat ttaaccattc
     1381 tataaaactg gcataattca gagaacgaac atcgtccaag taatttggga gtattttgat
     1441 aaatctaaac ccattatcta attcaaatga caaaacagga tcttttaatt ccccttttat
     1501 cactttgtga gcgtattcag atggagacat cctgtctgca tattcgctgt aattgaatag
     1561 tcttcctcct gctatcattc ttctcagatt caacttagca gctaattcct ttctagcatc
     1621 ataaagcata ccacctatac cttcatgtct gtgttttgga tgtgtagaga tatctgcccc
     1681 atacagacta tctccattag aattatgatt tgtgaaccta ccatctgcag taatttcttt
     1741 ccatgtgtgt tctgcatact cagggttaag tgagactata agagtactgg cagaaccaac
     1801 taccatgcca tctggttcaa cagcaacaaa ttgtccttgt ggaaaaatgc gaagatggct
     1861 ttcaagctct tgtggatgcc atatatttcc ataacgagca agatatggaa atgattcttc
     1921 ttgtaaatct ataattttag gaatgtcttc tggttgcgta tttctaacaa taactcctaa
     1981 atcacgtgga tgtaataaat ctgacatatg ctttctgttt gtatacacct ggtttactat
     2041 cttgaaagat ataaaagctc tatctttcta atcaagaatg gatttagatt catagaaaat
     2101 acttttctaa ttatctttac ggcaaacatt ctttaaatta cgctagtttt atagtacgat
     2161 cagattcaaa gtacagaatt tgcaatgatt aatcgagaaa gagaatatca aatgccactt
     2221 ataatagact gccatgttca tctcaataat tattatgacc aaattagcaa gacaggaaaa
     2281 aaatttcttt ccttagaaga aagacttaac tcattaattg actctatgca tgataacggt
     2341 attgagtatt ccctcatact ctcatcttac aaagtggatg tggacagacc atctacatct
     2401 agcatcattg atattacaaa aaaatacgat aataaacttg gagttgtagc aggatttaca
     2461 attgataacc atactgatga agatctaaaa aattgcagag aatggctaaa agatggcatt
     2521 atcaaaggta taaagctcta ttgcggatat gaacattatt atccatctga tcaaagatat
     2581 caaagagttt atgacatgtg tatcgagtat ggatctccca ttatgataca tactggagat
     2641 gtattcttaa agacagctaa gatcaaatac tcccatcctt tgaatataga tgatgttgca
     2701 gttgataatc ccgaattaaa gatagtgatg tgtcatttag gaaatccttg gataacggat
     2761 tgtcaggaag tgctatacaa gaatcgaaat gtatatgcag atatttctgg actaattatt
     2821 ggcaacttta caccgtctaa tgaaatatac tacatgagta aaataaaaga actattgact
     2881 tatgtatctg agccacacag cctattatat ggaagcgatt ggcctatttc cagtatcagt
     2941 tcttacctta gttttattca aaaacttgaa cttaatcagg agtcccttgg gcttttaatg
     3001 ttcaagaatg caaaaagtgt ttttgcgcta tgataatcgt ctgccttgta tatccttcaa
     3061 ctatctttat gttcgatgct ttgaatccct ttaaaagaaa tgatagtagg gtaaactcat
     3121 ctaggtttgg ataaaatcat ttgaaaccaa acctgaaggt ttcgttagct actccttaac
     3181 tgattttggt gtgggtgtat gagcgcatct agggaagcaa tgcttatagc aag
//
LOCUS       DATAAS010000075         2717 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2231001, whole genome shotgun sequence.
ACCESSION   DATAAS010000075 DATAAS010000000
VERSION     DATAAS010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2717
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2231001"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            192..1148
                     /locus_tag="VHF08_01120"
     CDS             192..1148
                     /locus_tag="VHF08_01120"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEX2067283.1"
                     /translation="MKVPIHDGAYYLLNAHDWLTNSPLSEFYRPPLISWIIAGIWSIT
                     GESWVIVKGVQSAFTVSAGIILYILLRKHKGAMFAFGVTGLTMVSGPLFFFSTQIGTE
                     GLSLFFVVLTLYLLKSQKESHWFLAGITIGLTFASRYPIILQALVIFLVESLIVRKPR
                     HIIKTISGLMLVITIVVLVVYLKAGTFQTALGKDTALTLLFSPFYLINSIDIWGLAFL
                     LVPIALLHKRTYSDKYNYTFIAWFIVSLLFWSANSSNFQFRFTIQYTPAVYFLSVLAI
                     ENIIKNGITINNTILFWRNSVISHIKYFKRRFKYDIFGRWPE"
     gene            1576..>2717
                     /locus_tag="VHF08_01125"
     CDS             1576..>2717
                     /locus_tag="VHF08_01125"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX2067284.1"
                     /translation="MSRKGWFIRFLILGAIATILIIKAYLLLYVLLFVGIYSFLTTLL
                     LFSIFVLSYFKYKDPFSNAKNLVLSSDHLPLVSIVVAVKNEEENIRNCVQSCINSIYA
                     NKEIIIVNDGSTDRTTEILKQMQLENGSKLQVIHLPRNLGKKQAIEHATKIAKGEIYA
                     FMDSDCDMHSDAVEKAVKIFLSDRNIGALATYARVRDVYKGTLLEKMQDVWADGQFRL
                     LKGMESSYNSVTCCSGSLSFFRRQAIQNFMYEWAHDRFLGLENFKYATDRRLTAHVLG
                     AENTSIVTISSQTNTYNKNNTQLLQNIRTSDENIGESTPLDQYANSSSKIERRNYWKV
                     VYSFSVRVNMGVPKTFRALILQQVRWRKSFIRSIFATGKIYWRRPF"
BASE COUNT          876 a          411 c          475 g          955 t
ORIGIN      
        1 agcagaattt gagacaaatt tagtagaatt tatctctaca aaaaattttc ctagatatgg
       61 caatagaaaa ttacaacaag gtgaggaaga acaaagattt ttttgccaaa ttatataagt
      121 ataaaattga tataattttt gccatttttt gtttatttct tgtttatgaa tataattatt
      181 atatttctct tatgaaagtc cctattcacg atggtgcata ttatcttctt aatgctcatg
      241 attggttgac aaatagtcct ctgagcgaat tttataggcc gccactaatt tcttggatta
      301 ttgctggaat ttggtcaata actggtgaaa gctgggttat tgtaaagggc gtacaatcag
      361 ctttcactgt tagcgctggt atcatattgt acattctttt gagaaaacac aaaggtgcca
      421 tgtttgcatt tggtgttaca ggcctcacta tggtaagtgg gcccctgttc ttctttagta
      481 cccagattgg aaccgaaggg ttatcgctat tctttgttgt ccttacttta tatcttctta
      541 aaagtcaaaa agaaagtcat tggtttttgg cagggataac cattggattg acttttgcat
      601 cacgctatcc tatcattctg caagcacttg taatttttct agtagagagc ctaatagtta
      661 gaaaacctag gcatatcatt aaaacaattt caggcttgat gcttgttatt acgatagttg
      721 ttttagtagt atatttaaag gctggcacat ttcaaacggc gcttggcaaa gatactgctc
      781 ttacattgtt attctcgccg ttctatctaa taaattcaat tgatatatgg ggtttagcat
      841 tcctgcttgt ccctattgct ttactacata agagaacata tagtgataaa tataattaca
      901 cctttattgc atggtttatt gtctcccttc tgttttggag tgcaaatagc tcaaacttcc
      961 agtttaggtt caccatccaa tacacccccg cagtttattt cttgtctgtg ctcgcaattg
     1021 aaaatattat aaaaaatggc ataacaatta ataatacaat tcttttctgg cgtaatagcg
     1081 ttatatcaca tatcaaatat tttaaacgca gatttaaata tgatatattt ggacgctggc
     1141 cagaataata atatattatt aaacaggcat taaaaacaat cgcagtaatg ttatagaacg
     1201 ttttaaattg ttaacttctt ccgcgactag cttgctcttt tacaattctc tatattgaat
     1261 aaattttata atgctcatta agtctaaagg cctagaatca atctaatgga taaatgtcat
     1321 taggatagtt agtttctttt gcggtcatcc atctacgctt gactatgttt gttatttcag
     1381 cttatgtatt ttataaaatg gttttagctt gtaaggtcat agaatagata tcaatatttt
     1441 ctttgctgat tagtttaaga tctattaact ttatttgatt tttctaataa gattctgtaa
     1501 atttattcta tatgcttgca tttttaagta tatataccaa gtcttatggt ttagttttga
     1561 taaaggtaca agtttatgag tagaaagggg tggttcataa ggtttcttat actgggagca
     1621 attgcaacca tccttataat caaagcatac ttgctactct atgttctgct gtttgttgga
     1681 atttacagct tccttacaac cttgttatta ttcagtatct ttgttttgag ttatttcaaa
     1741 tataaagatc catttagcaa tgccaaaaat ctcgtattat cttcagatca ccttccgctt
     1801 gtctcaattg tcgtggcagt aaaaaatgag gaagaaaata tccgaaactg tgttcaatct
     1861 tgcattaact caatatatgc aaataaggaa atcataattg ttaatgatgg aagtacagat
     1921 aggacaactg aaattttaaa acaaatgcaa ttagaaaatg gatcaaaatt gcaggtaatt
     1981 catctaccta gaaatttagg aaaaaaacaa gctattgaac atgcaaccaa gattgcgaaa
     2041 ggggaaattt atgcatttat ggatagcgat tgtgacatgc atagtgatgc agtagaaaag
     2101 gcagtaaaga tttttctatc cgatagaaat attggggctt tggctacata tgcgagagta
     2161 agggatgtat acaaaggaac cttactagag aagatgcaag atgtatgggc tgatggacaa
     2221 tttagactac ttaaaggaat ggaaagttca tataattctg ttacctgttg ttcaggttca
     2281 ctgtcatttt ttagaagaca ggccattcaa aattttatgt atgaatgggc tcatgataga
     2341 tttttgggtt tagagaattt taaatatgca acagacagac gtttaactgc tcatgttctt
     2401 ggagctgaaa atacctctat tgtaactatc tcttcccaaa ctaatactta taataaaaat
     2461 aatacacaac ttctgcaaaa tataagaact tctgatgaaa atataggcga atctacgcct
     2521 ttagatcagt atgccaatag ttctagcaaa attgaaagac gaaactattg gaaggtagtg
     2581 tatagtttca gtgtaagagt aaatatggga gtccctaaaa cttttcgtgc tcttatatta
     2641 caacaagttc gatggagaaa gagctttatc agaagtatat ttgcaacagg aaaaatctat
     2701 tggagacgtc cgtttat
//
LOCUS       DATAAS010000076         2914 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3311277, whole genome shotgun sequence.
ACCESSION   DATAAS010000076 DATAAS010000000
VERSION     DATAAS010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2914
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3311277"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1713)
                     /locus_tag="VHF08_01130"
     CDS             complement(<1..1713)
                     /locus_tag="VHF08_01130"
                     /inference="COORDINATES: protein motif:HMM:NF037100.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016779 - nucleotidyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase domain-containing
                     protein"
                     /protein_id="HEX2067285.1"
                     /translation="MVTQDDGTRRNLISMSNISSEQLKIIDNCVNKIAKNNEIVGVCL
                     YGSKVAGYSRPNSDFDIIVVLENYSFIVKYVYLKESKIEVSALLVDRQSLEKDARTAF
                     LGEFVVGRLLHIYDAILNPDLFKRIETIYKKRVIIEEIFDIVRSNNILSTEISFPLDF
                     IMFSKIKRRSLLYPNALYSYYKIYNCENASRNIDFALDGYRRALNEILNEDKELLDKN
                     PSDNSLHISEKRILINKNGKIDSLKLGKKLQDLSSYLIHVYAGRVTFRYAVKEAQSKI
                     KRQKKHELNLPLFMSSPRESYWKLPEGVLILNSRRWLDIIANNVSFQRYSISNKRRLG
                     NVDSRTICFTLKNHDDNSHKTIVVKQYAKTKGVKWAALNVWTSQGRRFKVDPLFRLGN
                     EYKALRYIRNLGLNTPTIESVILGKRLLVTEFIKGNSLADIIQYSLNETDEYNNIDFI
                     KAAGEQIATIHNDKSTLGNIKPKNLIIRGNSLYFTDVDQFGFHSGDPIWDIVQFICRG
                     LKKTTDSNVASKVVRGFLFGYSNEITAEYIKKLSRSKRYIESFYPLLSPAVARSIKRE
                     IRAFI"
     gene            complement(1707..2402)
                     /locus_tag="VHF08_01135"
     CDS             complement(1707..2402)
                     /locus_tag="VHF08_01135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067286.1"
                     /translation="MVFNSLQKVEDSLNSGHLPKKIYDLILQRYEIVTKGIKRIENAA
                     RLKYPYYYIEPNLVISTSQVESSQFGVFFARTIPVVSDNRRLNVVIQITAPLIAFGLL
                     GTIHAILAHEFIHYLNLVGRIMRMGIISDSISGTLFEERYEDSSRLMEARSVFKPDRT
                     LVDHITKKFPEGFSDIRLEGKVVNEWMNKGLPTIKVTIDSNIVKLPIELMANLEVDEQ
                     VKKRIMEIENKKW"
     gene            complement(2428..>2914)
                     /locus_tag="VHF08_01140"
     CDS             complement(2428..>2914)
                     /locus_tag="VHF08_01140"
                     /inference="COORDINATES: protein motif:HMM:NF044739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067287.1"
                     /translation="DEESIVLGKGRPFFASISNPRIRKLENNFKFSENGILVTLRRKS
                     DNLIGSSVAFITKIRILIKCDRDLTKSDIENIKLYGGTIVKFETKSRQFSKRIYSLRI
                     QKIDSNHFVITVITDGGFQVKQFIGEREYAKPNISDIFDSNCRCISFDILDVDIQKHF
                     F"
BASE COUNT          883 a          537 c          428 g         1066 t
ORIGIN      
        1 gatgaacgct ctaatttctc tctttattga tctcgcaact gctggactta acaacggata
       61 aaatgattca atataacgtt ttgatcgtga caattttttg atatattcgg cagttatttc
      121 atttgaataa ccaaataaga atcctcttac tactttgctt gctacattag aatcggttgt
      181 ttttttaagt ccacgacaaa taaactgcac aatgtcccaa ataggatctc cagagtgaaa
      241 tccgaattga tcaacatctg taaagtacag tgagttccct cttatgatca aattttttgg
      301 ttttatattt ccaagagttg atttatcatt atgtattgta gctatttgtt cacctgccgc
      361 cttaatgaaa tcaatattat tatattcatc agtttcattc aatgagtact ggataatgtc
      421 tgcaagcgaa ttgcctttta taaattctgt gactaacaac ctctttccaa gaatgactga
      481 ttcaatagta ggtgtattta atccgaggtt acgaatgtag cgaagcgctt tatattcatt
      541 ccctaatctg aacaatggat ctaccttaaa ccttcttccc tgggaagtcc atacattcaa
      601 tgcagcccat tttacgccct tggtttttgc atattgcttt acgactattg tcttgtgact
      661 gttatcatca tgatttttta atgtaaagca aatagttctg ctatctacgt ttcctaaacg
      721 gcgtttattt gaaatagaat atctttgaaa tgacacattg ttagcaatta tatcaagcca
      781 tcttctacta ttgagaatca atacaccttc aggtagtttc caatatgatt ctctaggcga
      841 tgacataaac agcggtaagt tcaattcgtg ttttttttgt cgcttgattt tcgattgagc
      901 ttcttttact gcatagcgaa atgtaactcg accagcataa acatggataa gatatgaact
      961 taaatcttgt aatttttttc ctaacttcaa agaatcaatc ttgccgtttt tgttaataag
     1021 aatacgtttt tcagatatat gtagcgaatt atcagaagga tttttgtcta gtaattcttt
     1081 gtcttcattt agtatttcat tcaatgccct tcgataacca tcaagtgcaa aatcaatatt
     1141 cctgctggca ttctcgcagt tataaatttt gtaataacta tagagcgcat tgggataaag
     1201 taggcttcgt ctttttattt ttgaaaacat aataaaatcc aacggaaaag aaatttctgt
     1261 gcttagaata ttatttgatc tgactatatc aaatatttcc tctataatta ctctcttctt
     1321 ataaatagtt tcaatccgct taaataaatc tgggtttaag atggcgtcgt atatatgcaa
     1381 tagtctacct accacaaact ctccaagaaa tgcagttctg gcatcttttt ctagagattg
     1441 gcggtctact aggagagctg aaacttctat tttcgattcc tttaagtaaa catatttaac
     1501 tataaaagag taattctcaa gtacaacgat gatatcaaaa tcgctgtttg ggcggctata
     1561 accagcgact tttgatccat acagacagac accaactatt tcattgttct ttgctatctt
     1621 attgacgcag ttatcgatta tttttaattg ttcactagaa atattagaca tactgattaa
     1681 atttcttctt gtcccatcgt cttgtgtcac cactttttat tttcaatttc catgattctt
     1741 ttttttacct gttcgtcaac ttctaggtta gccattaatt caatcggtaa ttttacgata
     1801 ttagaatcga tagtgacttt gatcgttgga agccccttat tcatccattc attaactact
     1861 ttgccttcta gtcgtatatc actaaacccc tccggaaatt tctttgtaat atgatcaacc
     1921 aaagtacgat caggtttgaa aactgatctc gcctccatta atctagatga atcctcgtat
     1981 ctctcttcga ataatgtacc agatattgag tctgatatta tccccattct cataatccgg
     2041 ccaactaaat taagataatg tataaactca tgtgctaaaa tagcatgaat agttccaaga
     2101 agaccgaagg ctattaaggg agcagttatt tgaattacaa catttaatcg cctattatca
     2161 ctcaccactg ggattgttct tgcaaagaat acgccaaatt gtgaagactc cacctgcgac
     2221 gttgaaataa cgagattagg ctctatataa taataaggat attttaatct cgctgcattt
     2281 tctatccttt ttattccttt agtaactatt tcatatctct gcaatatgag atcataaatt
     2341 tttttaggta aatgtccact gtttaatgaa tcctctactt tttgcaaaga attaaaaacc
     2401 atctggatac tctaaaagtg acatagtcta aaaaaaatgt ttctgtatat ctacatcaag
     2461 aatatcaaag gaaatacatc tgcaattaga atcgaaaata tctgaaatat tgggtttggc
     2521 atactctctt tctccaatga attgcttgac ttggaatcca ccatctgtga tgaccgtgat
     2581 aacaaaatga tttgaatcta ttttttggat cctgagtgaa tatattcttt tactaaattg
     2641 ccttgatttg gtttcaaatt ttactatagt tccaccataa agtttgatat tttctatgtc
     2701 agattttgtc agatctctgt cgcattttat taaaatcctg atctttgtga taaatgcaac
     2761 agaagagcct ataagattat ctgatttgcg ccttagtgta actagaattc cattttcact
     2821 gaatttaaaa ttattctcca atttacggat tcgtggattt gatatacttg caaaaaacgg
     2881 ccttcctttc cctaaaacta tgctttcttc atcc
//
LOCUS       DATAAS010000077         1954 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_72976, whole genome shotgun sequence.
ACCESSION   DATAAS010000077 DATAAS010000000
VERSION     DATAAS010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1954)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1954)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1954
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_72976"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(121..1596)
                     /locus_tag="VHF08_01145"
     CDS             complement(121..1596)
                     /locus_tag="VHF08_01145"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: protein motif:HMM:NF003211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase"
                     /protein_id="HEX2067288.1"
                     /translation="MIYYEEIMKLALERGFYFPSCEIYADAPAGFWEYGPQGVNMKNK
                     FIDLWRRELVRRDGMMEIDGSQIMSKSVFIASGHINNFTDPIVKCSKCKSIFRADRFI
                     TEKIGEDVHEGMTNEEMNAIIKKHDLKCANCNGELDAVKRFNMMFKVNIGPDQEEAYL
                     RPETCQTIFVDFSRIFKTMRGKLPLGIAQIGKSFRNEIAPRQGLLRLREFYQAEIEVF
                     CNPQKLNDLPRFDEIKDTILRLYDGTSSIELTADEGIRKGLLPNKLVAYYLALLNEFY
                     AKTGIDMKRTRFRRLTNTEKAFYSTIAFDFEVETSTGWLELVACNYRSDYDLQGHAST
                     SKQNLEVIDPSDQKKVLPHVFELSMGIDRSIFTILEHSYFEDKEHDDRIVLKLKPYLA
                     PILLGILPLMTKDGLREKAQKIYSELKREFDTFYDESGSIGRRYRRLEEIGTPFAVTV
                     DKITMEDDTITVRYRDTMQQERIKISQLPLFLQTALFKNYR"
BASE COUNT          584 a          392 c          274 g          704 t
ORIGIN      
        1 cttttccagt tatataatag ataaaagaaa ccctgcgaac atactctacc actgaataaa
       61 agaatagtta tcatgctaat atgccctctc tactacccat cgtcgtcacc gattttacac
      121 ctatctataa tttttgaata aagctgtttg caagaataaa ggcaattgtg atatcttaat
      181 tctttcctgc tgcattgtat ctctgtatct aactgtaatt gtatcatctt ccattgttat
      241 tttatcgact gttacagcaa aaggagttcc aatctcctcc aatcgtctat accttctacc
      301 tatcgagcca gattcatcat aaaaagtatc aaattctctt ttaagttcag aatagatttt
      361 ctgagctttt tcacgtagtc cgtcctttgt catcaaagga agtattccta acaatatagg
      421 cgcaagataa ggcttgagtt ttagtacaat tctgtcatcg tgttccttgt cttcaaagta
      481 agagtgctct aaaattgtga aaatgcttct gtctattccc attgaaagct caaatacatg
      541 aggtaagacc tttttctgat ctgatgggtc aattacttcg agattctgtt tgcttgtaga
      601 agcatgaccc tgaagatcat agtcagaacg atagttgcat gcaacaagtt ccagccaacc
      661 agtactagtc tcgacttcaa aatcaaaggc tattgttgag taaaatgcct tctcagtatt
      721 agtcagtcgc ctaaaacgag tgcgtttcat atctattcca gtttttgcat agaattcatt
      781 caaaagcgca agatagtatg ctactaattt atttggcaaa agtccctttc taatgccttc
      841 atctgctgtc agttcaatag atgatgttcc gtcataaagt ctcaaaattg tatctttaat
      901 ttcatcgaat cttggcaaat catttaattt ctgtggatta caaaatacct cgatctctgc
      961 ttgatagaat tctcttagtc ttagcaagcc ttgtcttgga gctatttcat ttctgaaact
     1021 tttacctatt tgagcaattc ctagaggtaa ttttcctcgc atagttttga aaattcgaga
     1081 gaaatcaaca aaaattgtct gacaggtctc tggtcttaga tatgcttcct cctgatctgg
     1141 acctatgtta accttaaaca tcatattaaa tcgcttaaca gcatctaatt ccccattaca
     1201 gtttgcacat ttcaagtcgt gtttctttat aattgcattc atctcttcgt tggtcattcc
     1261 ttcatgaacg tcctcaccaa ttttttctgt gataaatcta tctgctctaa aaatagattt
     1321 gcattttgaa catttgacaa taggatccgt aaaattgtta atatgtcctg atgcaataaa
     1381 aacgctctta ctcatgattt gagagccatc tatttccatc attccatcac gtctaacaag
     1441 ttctcttctc catagatcga taaacttatt cttcatattg actccttgtg gaccatattc
     1501 ccagaagcca gccggagcat cagcataaat ttcacaactt ggaaagtaaa aacctctttc
     1561 aagcgccaat ttcattattt cttcgtaata gatcatcttc tctagagaac tcctcaatca
     1621 catgttttaa atttactgtt gtctatctta aatgcttcat ttgattatct aacttcatta
     1681 attaatgaat gattaatata tatctattca gatatttaat ttaaatcaat taattctcta
     1741 tatatattga aaatgctact agtataaatg gaaaattttg taattatgcc aaaatttgtt
     1801 atgattacca ttttattttt tacacataca atgccactcg atgcttccca agccgttaag
     1861 ctcattggag tctcatatgg cgtattttgc tgattcatat tttcttgaag gtctttaaaa
     1921 gatgttatgc aataaaccaa cttctacata ttcc
//
LOCUS       DATAAS010000078         4005 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_616097, whole genome shotgun sequence.
ACCESSION   DATAAS010000078 DATAAS010000000
VERSION     DATAAS010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4005
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_616097"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            355..1338
                     /gene="radA"
                     /locus_tag="VHF08_01150"
     CDS             355..1338
                     /gene="radA"
                     /locus_tag="VHF08_01150"
                     /inference="COORDINATES: protein motif:HMM:NF003301.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair and recombination protein RadA"
                     /protein_id="HEX2067289.1"
                     /translation="MQEDDHQTDSFDLDSIDEIGPATKGRLEESGFRSLKDLIVRGPA
                     DISEATGMEIEKSTYLCNQARIRLEEMGIIDRSFITATKLYEKRKHEERISTGSKNLD
                     ELFVGGIETRSLTEIYGEYGTGKTQICHTLCIIVQQSKSKGGLSGKAIYIDSENTFRP
                     ERIVSIANARNLDPYKSLENIIVAKAYNSAHQELILEETGAIIDSNNVKLLVVDSAVA
                     HYRAEFLGRGTLSERQQKLNKFMHMLVRIAETYAVAVLATNQIQSSPDAMFGDAYRPT
                     GGHVVAHTSTYRVYLKRSGKNRIARMVDSPYHPEREVLFTLSEQGVADPEE"
     gene            1392..1694
                     /locus_tag="VHF08_01155"
     CDS             1392..1694
                     /locus_tag="VHF08_01155"
                     /inference="COORDINATES: protein motif:HMM:NF013336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067290.1"
                     /translation="MPSSHGTRRKSRSLLTKDKSARGISYLLIDYKVGDKVIVDVDPA
                     EHNTTPHRRFQGKVGIVEEVGRRTIKLAVMIGEKKKTLCTKLNHIKPLTTKMDNPK"
     gene            1691..2023
                     /locus_tag="VHF08_01160"
     CDS             1691..2023
                     /locus_tag="VHF08_01160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase Rpb4"
                     /protein_id="HEX2067291.1"
                     /translation="MTDIVKKEIITLPQVKEILESVKTDDMDQIQRWTFDYVGKFSKV
                     DSSLARKMVSQLIEKCDLKEEEAVEVVNALPSSIEELRAFTFGWKKLILTDTLEKMLN
                     ILKMGTES"
     gene            2059..2673
                     /locus_tag="VHF08_01165"
     CDS             2059..2673
                     /locus_tag="VHF08_01165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF655 domain-containing protein"
                     /protein_id="HEX2067292.1"
                     /translation="MSASPTGYSDNRTSMSSSGEQQFQRKYEEYAYILDFMLRGKSNT
                     VRGREGIIIQAIGEERLTLLELLGVQNMSFEVGERVYIGREGRDKVISVLGRLDYDNI
                     SQSAKNELPNIVETIVIANEKRFIDYMNMSQPITPRIHALELIPGIGKTYMMTIIKER
                     DKKRFESFEDIQNRVGLRDPAKLIAKRIIDEIAGEARMNLFVRK"
     gene            2670..3410
                     /gene="rsmA"
                     /locus_tag="VHF08_01170"
     CDS             2670..3410
                     /gene="rsmA"
                     /locus_tag="VHF08_01170"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: protein motif:HMM:TIGR00755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000179 - rRNA
                     (adenine-N6,N6-)-dimethyltransferase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEX2067293.1"
                     /translation="MKWSKRKSFGQHTLIDNKILARIVDASQITREEIVYEAGTGSGV
                     LTKQLCKSAKLVTSFEIDSEIYKKACCLYSCYSNLKLINADIFKIYDLQFDIFISNLP
                     YSRSRDALQWLPFQKFKRAIIMTQKEFVDKLQAKPGERNYRAITVLSQYCFNIERLFN
                     VGKEAFDPQPSVESTVIRLIPRSATIKKNTVSSLNLLFSQRNKKASLFSKKFGIKVEY
                     EDKKIDQLSVKELMELAGSIEIVPACGR"
     gene            3388..3918
                     /locus_tag="VHF08_01175"
     CDS             3388..3918
                     /locus_tag="VHF08_01175"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF017026.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HemK2/MTQ2 family protein methyltransferase"
                     /protein_id="HEX2067294.1"
                     /translation="MYQPAEDSFFLAECAKEYCGNLALEMGAGSGIILNTISQNFNRV
                     VGTDIDYVSLQYYKSNLPKNSALVCCDAASAFAVKFDFIVSNPPYLSDHDKKNKDHTI
                     DGGPTGIEATLHFIHSAVLVLQKQGKMLTIVSSLSDSSKLDKLINEMNLKKRIVKIRK
                     LFFETLYIIEISFDIA"
BASE COUNT         1438 a          609 c          810 g         1148 t
ORIGIN      
        1 agcccattta actaccttgt accgttaacc ttctattgat attcaaacaa atgtcttaga
       61 atattgttat tatgagtata tcaaattcaa tattacttta tgtacttaag actcttagta
      121 ggtataaagt gtcaaagttg tggtattaca atattaatcc tgatataatc taattcttaa
      181 tgaaatgaaa tgaatataaa aaacatattg tgatttttat agaaaacact tctatatgaa
      241 tctttcagaa agaatagaag aaaaactatg ttgattgttc tattctgatc atttaactga
      301 agccgaaatt caactcaaaa ctaattagtg gccataatag tttgaattat agccttgcaa
      361 gaagatgacc accagacaga ctcttttgat cttgatagta ttgatgaaat aggaccagct
      421 actaaaggtc gtttagaaga gtccggattt agatctctca aagacctaat tgtacgaggg
      481 ccagctgata tttctgaggc tactggaatg gagatagaaa agtcgactta tctttgcaac
      541 caggcgagaa taagattaga ggaaatgggc ataattgaca ggagctttat cacagctacg
      601 aaactttatg agaaaaggaa acacgaagaa aggatttcaa ccggatcaaa gaatttagac
      661 gaactttttg ttggaggaat cgagaccaga tctctgacag agatctatgg tgagtacggt
      721 acggggaaaa ctcaaatatg tcacacattg tgtataatag tacagcaaag taagtcgaaa
      781 ggaggactaa gtggcaaggc aatttatatt gacagcgaaa atacgtttag acctgaacga
      841 atagtttcta tagcaaacgc aagaaacttg gatccctaca agtcgttaga aaacataatt
      901 gttgcgaaag catacaacag cgcacatcag gaattgattc tcgaagaaac aggtgctatt
      961 attgatagta ataatgtaaa attgctagtt gttgattctg cagtagcaca ctaccgagcc
     1021 gaatttctcg gacgcgggac tttatcggaa agacaacaaa agcttaataa atttatgcac
     1081 atgctggtaa gaattgcaga aacctacgct gttgcggttt tggccactaa tcaaatacaa
     1141 tcttctcccg atgcaatgtt cggagatgcg tataggccaa ctggcgggca tgtagtagct
     1201 catactagca cgtatcgcgt atatcttaaa cgatctggta agaaccgaat agctagaatg
     1261 gtcgacagcc cctatcatcc tgaacgagaa gtattattta ctttatctga acaaggtgta
     1321 gcagatcctg aagagtaagg cttaaaatca ggtagataat attaaattaa gggttttggt
     1381 atgggtttgt catgccaagc tcacacggta caagaagaaa atctcgatct cttcttacta
     1441 aagataaatc tgctagagga atttcgtatc tgcttattga ttataaggtt ggtgataagg
     1501 ttattgtaga tgtggatcct gcagaacata atacaactcc tcaccggaga ttccaaggta
     1561 aagttggtat tgtagaagaa gtgggtagaa ggacaataaa attggctgta atgataggag
     1621 agaagaaaaa aactttgtgt acgaagctga accatattaa acccttaacg accaaaatgg
     1681 acaaccccaa atgacagata tagtcaaaaa agaaattatt acgcttccac aggtaaagga
     1741 gatcttagaa tcagtcaaaa cagacgatat ggaccaaatc caaagatgga cttttgacta
     1801 tgttgggaag ttttcaaagg tagattcaag tcttgctcgt aaaatggtaa gccagctaat
     1861 tgaaaaatgt gacctaaaag aagaagaggc agtagaagtt gtcaatgcct tgcctagttc
     1921 catagaagaa ctaagagcgt tcacattcgg atggaaaaaa cttatcctta cagatacttt
     1981 ggaaaaaatg ctaaatatac ttaaaatggg tactgaaagt taaataaaaa gtaatcagta
     2041 aatatatagg gaagtatatt gtcagcatcg ccgacaggct actctgataa ccggacaagc
     2101 atgtcaagtt ccggagaaca gcaatttcaa agaaagtatg aggaatatgc ttatatatta
     2161 gatttcatgc ttagaggaaa atcaaataca gtaagaggaa gagaaggcat aatcattcaa
     2221 gccataggag aggagcgttt aactctgtta gaattgcttg gtgttcaaaa tatgagtttc
     2281 gaagtgggag agcgagtgta tattggacga gagggtcgag ataaagtgat aagtgttctt
     2341 ggcagattgg attatgacaa tatttcacag tcagcgaaaa atgaacttcc aaacatagta
     2401 gaaacaattg tgattgcaaa cgagaaaagg ttcatagatt atatgaatat gtctcagcca
     2461 attacaccaa gaattcacgc cctcgaattg attccgggaa tagggaaaac atatatgatg
     2521 acgataatca aggagcggga caaaaaaaga tttgaatcat ttgaagatat tcaaaataga
     2581 gttggattaa gagatccggc aaaacttata gcgaaaagaa tcatagatga aattgctggt
     2641 gaagctagaa tgaatctatt tgttagaaaa tgaaatggtc taaaagaaaa tcctttggcc
     2701 aacatacgct catagataat aaaattttag caaggatcgt tgatgcttca caaattacta
     2761 gagaagagat tgtttacgaa gcgggtactg gaagtggggt tttaacaaag caactttgta
     2821 aaagtgccaa actagttacc tctttcgaaa tagacagcga aatttataaa aaagcgtgtt
     2881 gcctttattc ttgttattcg aatttaaagt taataaatgc agacattttc aaaatatatg
     2941 atttgcaatt tgatattttc atctcaaatc ttccatactc aagaagtaga gatgctttac
     3001 aatggttgcc atttcaaaaa tttaaacgag ctataattat gacacaaaaa gagtttgttg
     3061 ataaattaca agccaagccc ggagaaagaa attatcgggc aattacagtt ttaagtcaat
     3121 actgttttaa catagaaagg ctatttaatg taggtaaaga agcattcgac cctcagccat
     3181 ctgtggagtc aacggttatc agattaattc caagatctgc gacaataaaa aaaaacactg
     3241 tcagtagcct caacctttta ttttctcaaa gaaataagaa ggcatctttg ttttcgaaaa
     3301 aatttggcat taaagtggag tatgaggata aaaaaataga ccagttaagc gttaaagaat
     3361 taatggaatt ggcaggttcg atagaaattg taccagcctg cggaagatag ttttttttta
     3421 gcagaatgtg ctaaagaata ttgtggtaat ttagcattag aaatgggtgc gggatccggt
     3481 ataatactaa ataccatttc tcaaaacttc aatagggtag tcggaactga cattgattat
     3541 gtgtcacttc aatattataa aagtaatctt ccgaaaaata gtgcgctagt atgttgcgat
     3601 gctgcttcag cctttgctgt taagtttgat tttattgtaa gcaatcctcc gtatctgtct
     3661 gatcatgata aaaaaaataa agatcatact atagatggag gacccacagg tatagaagct
     3721 actttgcatt ttatacattc tgctgttttg gttcttcaaa agcaaggtaa gatgttgaca
     3781 atcgtttcgt ctctgtctga tagctctaaa ttagacaaat tgataaacga aatgaatcta
     3841 aaaaagagga tcgtaaaaat aaggaagcta ttttttgaga cgctttatat cattgagatt
     3901 agtttcgaca ttgcttgact ttaatagtta cttttttaga atcttggatg ctctatctgc
     3961 tatttcttct gccattcgag aaagagtact atttccgcct agatc
//
LOCUS       DATAAS010000079         3596 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1178720, whole genome shotgun sequence.
ACCESSION   DATAAS010000079 DATAAS010000000
VERSION     DATAAS010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3596)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3596)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3596
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1178720"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(388..585)
                     /locus_tag="VHF08_01180"
     CDS             complement(388..585)
                     /locus_tag="VHF08_01180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067295.1"
                     /translation="MSNNISYLTNGLKYYCVEVTCSDGIQYGIQAYGDEAVDLYKAAH
                     RYFDVEKTIKEEQNTIFGTNH"
     gene            1757..3172
                     /locus_tag="VHF08_01185"
     CDS             1757..3172
                     /locus_tag="VHF08_01185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEX2067296.1"
                     /translation="MPSSTSSVDGKRHKKKLVFFVLSVTIIIIVILIMMTIVALYFNL
                     ENMTIGQAAHQQQQHQQQQQQQKNKQWPSLQVPYKSLKIELVTEGLSFPTSMEFIDNN
                     NILVLQKDNGTVHLVSNGILQKKPVLKVQVDTRGERGMLGITHSRNDTVFLYFTESEH
                     DKPLRNRVYRYHWNGVNLVNSTLILDLPAAPGPYHQGGKLKIGTDNYLYAVIGDLTSG
                     DGLLQNYKDGKKPNDTSVILRVNPDNGSSVNNNPFSNNKNKNDDYNNDKDNFERLLDK
                     YYAYGIRNSFGIDFDPITGALWDTENGENGYDEINLIKPGFNSGWAQVMGPIARNNNK
                     TYNDLVNFPGSIYADPVFSWKDQIGVTDIEFLNSSKLGDNYANNIFVGDINNGNLYYF
                     EVNDRRTGLKFDDDDNNNNNNNSNRYHIGLTDFVADNKDELSAVVFGTGFGRITDIET
                     GPDGFLYILSYQDGKIYRIVG"
BASE COUNT         1277 a          508 c          612 g         1199 t
ORIGIN      
        1 agccacctcc agatacataa actctaagaa gtagattgtc tttgccttct tgtttcataa
       61 attcaacaac tttctctgct gcctttggcg taatagttac aatttgactt tgttgtgctg
      121 tttccattgc tatatttaga atactttaga ggtatttaaa cctgagataa tagaataatt
      181 tttcatattc atgtagttaa tttttcaatt attaattact acagagagtt gccgtaaaag
      241 atatttttca tcatgatgat catctatatt gttgtcatga tagatgattg ttgcctctaa
      301 cagagaaagc ttacaagagc aattttagaa aagcttgcaa aggacagaga tgatcaagtc
      361 gcagtaatca gtatcaaaga tattggttta gtgatttgta ccaaatatag tattttgttc
      421 ttctttgata gttttctcaa catcaaaata tctgtgtgct gctttataca agtctacagc
      481 ttcatctcca taagcttgta ttccatactg aattccgtca ctacaggtca cttcaacaca
      541 atagtacttt aacccattag tcagatagga tatattatta gacatttttg ttatctgaca
      601 agatacttta ttgtatttgt agtcatcttc ttgatcctgt ttccctctat tcttatatct
      661 tgaatacagt agccgttgca acgcatcgat gctattataa tacaatgaaa tcctcccact
      721 tttttattat gtaaattact ccttccctaa ctcttgtgtt aagaatagaa catcctcctc
      781 aaatatttct gatttctaaa gataggaggt tctattcttt gtaagacaac gatatgtgaa
      841 agcattatag gtagtatcat aacacttatg tcatagatct tttattgcct tataatagaa
      901 gaggcaactt tgttagaggg aggggtagaa gaaaagtatt ataccatagg tatacggtaa
      961 aataaggtac actaaatatc ctcattgtaa agttattgag ggcatttgag agattctaaa
     1021 tatatggaaa attgataagt aggaatgttt tttcaatcga taaaggatat tggcttcatt
     1081 attcaaaaag aaagtgaaaa ataaagatca gataacaatt ctctttaatc aaaagacaat
     1141 ttgaatctgt aaatgctcat tagcaaatca tctcttaaac caagtttttt atatgcttgt
     1201 gactttcatc agataatact gacttgatta ttactaagga ggattaagga tgcctcttaa
     1261 gagaaaatct aaaaaaagag ttattattta ttgagttgca tgcatgccca ataacagtaa
     1321 aaccgtcata cgtaacgtga gttgcaaata tcacaacaaa caattttagt ttaaattcat
     1381 tataatcatc ggtattcgaa tcataaaagg aaatatattc agagaaatat gcatagtgtg
     1441 aatgaatcaa tcattaatac gtacctttgg accaattaca aatatctgta ttcattacca
     1501 gtatattgat aagtttgtgt tgtatttggt ctgttaaaaa taacccttag tattcacaag
     1561 tttttatgat tgtgctatag tgagaatttt tcaatatgcg tcttaaaaag tgaattttat
     1621 tagtatagat aatttggcaa aaacaattag cattcaaaaa gattcttctt gatataatga
     1681 atatcttgat tgcgttactt tcctttactt tacttccagt aatgtagata aaccctgtct
     1741 agttttaata gaagaattgc ctagctcaac aagtagcgtt gatggaaaga gacacaaaaa
     1801 gaaactagtt ttttttgttt tatccgttac tataataata atagtaattc tgattatgat
     1861 gacgatagta gcattatact ttaacctaga gaatatgaca ataggccaag cagcacacca
     1921 acaacaacaa caccaacaac aacaacagca gcagaagaac aagcaatggc catctttaca
     1981 agttccatat aaatctctga aaatagaatt ggtgactgaa ggattgtctt ttcctacaag
     2041 catggaattt atagataata acaatatttt ggttttgcaa aaggataatg gaacagtaca
     2101 tcttgtctca aatggtattc tacagaagaa gccagtgtta aaagtacaag ttgacactag
     2161 gggagagcgt ggaatgcttg gaattaccca tagtagaaat gatactgtgt ttctttattt
     2221 tactgagtcg gaacatgata aaccattaag aaatagagta tatagatatc attggaatgg
     2281 agtgaatctt gttaatagca ctttgatttt ggatttgcct gcagctccag gtccctatca
     2341 tcaaggtgga aaattgaaga tcggtactga taattacctc tatgcagtta taggggacct
     2401 tacttcagga gatggtttac tacagaatta taaagacgga aagaagccta atgacacctc
     2461 agtcatatta agagtaaatc cagataatgg ttcatcagtc aataataatc cattttctaa
     2521 taataagaat aagaatgatg attataataa tgataaggat aattttgaga gattattgga
     2581 caagtattat gcatacggta taagaaatag ttttggaata gattttgatc ctataacagg
     2641 agccctgtgg gatacagaaa atggagaaaa tggctatgat gaaattaatt tgattaaacc
     2701 aggctttaac agtggatggg cacaagttat ggggcctatt gctagaaata ataataaaac
     2761 atacaatgat ttggtcaatt ttccagggtc gatatatgct gatccagtat ttagttggaa
     2821 agatcagatt ggagttactg acatagaatt tctaaattca tcaaaacttg gagataatta
     2881 tgcaaataac atttttgttg gtgatatcaa taacggtaat ctatattact ttgaagttaa
     2941 tgacagaaga acaggtctaa agtttgatga tgatgataac aataataaca ataataatag
     3001 caaccgctac catattggac tgactgattt tgtggctgat aataaagatg aattatcagc
     3061 agtagttttt ggaactggct ttggccgtat aactgatatc gagacaggtc ctgatggatt
     3121 tttgtatata ttgtcatacc aggatggaaa gatatataga attgtaggct gatgacatag
     3181 acataaaaac aaaaaagtac ctaattctta aaggtggcta ttattagagt ataagtatta
     3241 taacaaacta caaagtgcaa caattaacca gctattcttt ggagatgata tggcttacta
     3301 aaagatttca tagtagaaaa gataggtcat cttatcaatg taaaatttca tcgctctttc
     3361 tatctgcatt caccaaatag caatgttaaa agctgtttta cacttatgcc aattgtatga
     3421 aaaatagaag aaaacttact ttagactaag gaagaacaat agatctagtt tatagtatgt
     3481 cttttttaaa aaattgcagt tattagagga ttgtctaata gatagagaca agatagcagt
     3541 aaaggtaatt aaagtataac tcatttgctt gttcattttt attaattata atgata
//
LOCUS       DATAAS010000080         3315 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2775430, whole genome shotgun sequence.
ACCESSION   DATAAS010000080 DATAAS010000000
VERSION     DATAAS010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3315)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3315)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3315
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2775430"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1460)
                     /locus_tag="VHF08_01190"
     CDS             complement(<1..1460)
                     /locus_tag="VHF08_01190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2067297.1"
                     /translation="MQNSCDTLITNAAAVIPRVGILQTNIMIENEKIKTLTKSIDNIH
                     ASKIINANGKYVLPGVIDPHVHYGVYTPIDEAAQTESRSAAVGGVTTMIRMLRVHDSY
                     QKKIGKQLEASKHHHHIDYSVHASILTPDQIQDIPYLKKIGITSVKIYMNLGADLNRI
                     LMDLEPGSHDIREGEVNITDELISSIIEEASKVHSTVLVHAEDPVICADHIKRKRESE
                     SMSAKMTTTTAATISANSSSLKTWSDCRPSISSEAESIKKISVIGRKYGSNLYFVHIG
                     STAALEAILSEKEKGNSNFYIETCPHYLTHTTEFEKLTGKVVPPIRSKSDVQSMWSAL
                     RNGIIDTIGTDHVANRLSMKMGSGDIWSALAGFPGIATMLPVLLSKGVNEDRITMEQV
                     AEVTSYNAARIFGMYPNKGTIQLGSDADLTIVDLDLQQKVTPDLLQSYSDYTIYDGWT
                     LKGWPVLTMVRGKVIMENGRVSSESLGHGKFVGRPV"
     gene            1940..2761
                     /locus_tag="VHF08_01195"
     CDS             1940..2761
                     /locus_tag="VHF08_01195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067298.1"
                     /translation="MPRIDDDPFSNWAELIHKPVYSIDGKKLGYLSKVISDYMFVSRG
                     FINLVKYLIPKSFAESVSKKGIRLRITAYEVHLKYSYTKMKYAITNFGILPETVVGHR
                     TIYDRFQTLRYHITRNRFAALIAFVSGILFLMSGYKANLAIYDIVRHEVMIYTARELW
                     AFVLAPVGILAMLSQLGGITVLVGAALFVVNRVTLGKFLVFIGTGQGLFTIALRIWSE
                     IWSGRIALENNYITSLTSSAVGLGIFFAVLAQSIPKGWGETIVSKGIRYIFGKED"
     gene            complement(2951..3121)
                     /locus_tag="VHF08_01200"
     CDS             complement(2951..3121)
                     /locus_tag="VHF08_01200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067299.1"
                     /translation="MSTVLYGYQEDDNSPPPMSICPRCGRQVRLDGRCDCEMLFANSD
                     MKTKRIHSKGNE"
BASE COUNT          985 a          576 c          562 g         1192 t
ORIGIN      
        1 tcgacaggcc taccaacaaa ttttccatga cctaacgact cgctgctaac gcgaccattt
       61 tccatgataa ctttacctct taccattgtc aatactggcc agcctttgag tgtccatcca
      121 tcataaattg tataatcaga ataggattgt aacagatctg gtgtaacctt ctgctgtaaa
      181 tctagatcga ctatagttag atccgcatca gagcccagtt gaatagtacc tttatttgga
      241 tacataccaa aaattctagc agcattatag cttgtgactt ctgctacctg ttccatagta
      301 attctatctt catttactcc tttgcttagt aaaacaggaa gcatagtagc aattcctgga
      361 aagcctgcaa gtgctgacca gatatctcca cttcccatct tcattgacag tctgttagca
      421 acatgatcgg tacctatcgt atctattatc ccatttctta atgccgacca catgctttgt
      481 acatcacttt tagatctaat aggaggaaca acttttccgg tgagcttttc aaattctgtt
      541 gtatgtgtca agtagtgagg acatgtttca atatagaaat tagaattgcc tttctctttt
      601 tcagataaaa ttgcctcgag tgcagcagtt gatcctatat gtacaaaata tagatttgaa
      661 ccatattttc taccaatgac tgatatcttt tttatgcttt cggcctcaga agatatagat
      721 ggccgacaat cagaccatgt ctttaagctt gatgaattcg cagagattgt tgcagctgtt
      781 gttgttgtca tctttgcaga catcgattct gattctcttt ttcttttaat atgatcagca
      841 catatcacgg gatcctctgc atgtacaagt acagttgaat gtactttaga cgcttcttca
      901 attattgaag agattaattc atctgttatg ttaacctcac cttctctgat atcgtgacta
      961 ccgggttcaa ggtccattaa aatacgattc agatctgctc caagattcat atagatcttg
     1021 acggaagtaa ttccaatctt ttttagataa ggaatatctt gtatttgatc tggcgttagg
     1081 attgatgcat ggactgaata gtcaatatga tgatgatgtt tgcttgcttc aagttgtttt
     1141 cctatttttt tttgatagct atcatggacc ctaagcatac ggatcatagt agtgactccc
     1201 cctactgcag cggatctaga ttctgtttga gctgcttcat caattggagt ataaacacca
     1261 taatgaacat gagggtctat tactcctggt aagacatact ttccattagc attaattatt
     1321 tttgaggcat gaatattgtc aattgatttt gtaagagtct ttattttctc attttcaatc
     1381 attatattag tttgtaatat tccgacccta gggatcacgg cagctgcatt tgtaattaag
     1441 gtatcgcagg agttttgcat catctaattt ctctaatgat cggttgtaag atcacgcatg
     1501 tttaatcttt taatgagtta acaaggtttt ttgtcttcat tctaatatta ttatcaaaga
     1561 attacaagat acttatttga taaataatat cactggtaca tggtatcaga tcttagatat
     1621 agaaaaattc attacttttc cttctcatat agttaaatta atcaaatgat tcatacatgt
     1681 tctttagatg atagttgttg ttattgtata gcttataata gctacagaga acgctcaaag
     1741 tatttatctt taaatttggt attaattctt gtctttgtta ttactattat tctattttct
     1801 ttttcataaa taagataatt ttattctgat ttgagtatat tttcaatgat ccttttatta
     1861 ttttcctgtt aaaggccttt ttctttcaac tataacaaat aatagggtaa gagtccttat
     1921 taatactgta atatcacgag tgcctagaat agacgacgat cctttttcaa attgggctga
     1981 acttatccac aagcctgtat attctattga tggaaagaaa cttggctatc ttagtaaagt
     2041 aatctcagat tacatgttcg ttagtcgagg atttatcaat ttagtgaaat atttaattcc
     2101 aaaatcattt gcagaatcag taagtaaaaa gggaattaga ttaaggatta cagcttatga
     2161 agtccattta aaatattcgt atacaaagat gaaatatgct attactaatt ttggaatcct
     2221 acccgaaact gtcgtaggac ataggacaat ttatgataga tttcaaactt tacgttatca
     2281 tattactcga aatagattcg cagcattaat cgcatttgtt tctggaattc tatttctgat
     2341 gtcaggatac aaggcaaact tggcaatata tgatattgtc agacatgagg ttatgatata
     2401 tacagccaga gaattatggg catttgtact agctccagtt ggcatccttg ctatgttaag
     2461 tcagcttgga gggattacgg tacttgttgg agcggcatta tttgttgtaa atagagtaac
     2521 tcttggcaaa tttttagttt ttattggaac aggccagggt ctatttacta tagctcttcg
     2581 catttggtca gaaatatggt ctggtagaat agcgcttgag aataattata taacatcgct
     2641 gacatcttct gcagtaggat tgggtatttt ttttgcagtc ttagctcagt caattccaaa
     2701 gggatggggt gaaaccattg ttagtaaggg gataagatac atttttggaa aggaggatta
     2761 atactattga tttatttatt tcatatgtca ctacttcata aattgattta gatgacttaa
     2821 tctctctgct tagagactac tacatataga cagcgagcag aaaatattat ctctaatagc
     2881 cttctcctat tttactacta ttactgccga cggcacggtc taataatgac gacgatgacc
     2941 agcgacagag ctattcgtta cctttgctat gtatcctttt tgttttcata tcgctattcg
     3001 caaatagcat ctcacaatcg cagcgaccat cgagtcttac ttgtcgtcca catcgtggac
     3061 agatcgacat tggtggaggt gagttatcgt cttcctgata gccatacagt acggtagaca
     3121 taatatatat acgacatact accttataag atcttcatta aaaatgctat cttctgaata
     3181 ttctcgcttt atttatgggg tttgcgataa ttgtataaat taattcaata aaatatcaat
     3241 tttttaatat ggcatttcta ctaaaattac acaaactaaa ataaataata ttaatcgtat
     3301 gtccgtactg cacaa
//
LOCUS       DATAAS010000081         4319 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2238738, whole genome shotgun sequence.
ACCESSION   DATAAS010000081 DATAAS010000000
VERSION     DATAAS010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4319)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4319)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4319
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2238738"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(879..1088)
                     /locus_tag="VHF08_01205"
     CDS             complement(879..1088)
                     /locus_tag="VHF08_01205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067300.1"
                     /translation="MIIVILSGEHPNNGSNCFCTMENRLCAYCGKIFSGEGWPHVEGD
                     SNRGVLKIEQFCSEEHKCNFLSSEL"
     gene            1487..2128
                     /locus_tag="VHF08_01210"
     CDS             1487..2128
                     /locus_tag="VHF08_01210"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067301.1"
                     /translation="MTGFFTNWTKNKKNHVDDTNKELIEALIPNSHVKPRIECVINDI
                     QLQISKLNVKISKMKTREEMLFNKVVDAMKRHDITHTKILPIQLAQLRKKQRTLNQAR
                     IALEQVSMRTSTIHVLSEIIKTLEPAMNPVKGSKSDFEILVPSTDTELDYMQMLTNSI
                     LSDSNQNNEIDIIGMNIVELSENDDIGHIINEASEVAEKCNNSNNNRFSSFSI"
     gene            2944..3231
                     /locus_tag="VHF08_01215"
     CDS             2944..3231
                     /locus_tag="VHF08_01215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067302.1"
                     /translation="MLVKINNITGNIVKVTRLDIDDYGSVIPLKELELKLPPNDNSII
                     QTLKSSSHAIIFTEGNNKDNDNSNTIILASSITNDELNEEKIKTINTVNKK"
     gene            complement(3654..4160)
                     /locus_tag="VHF08_01220"
     CDS             complement(3654..4160)
                     /locus_tag="VHF08_01220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067303.1"
                     /translation="MSINNKATNRNKDKHFSVDNSDYQDSKEEESAKTTTIDITKASS
                     TSKDILDITDTPDVATWNKGTQIKGSAADIIKRSQERGTKVTQGKITRTNATTIDLKE
                     KGPEDLIIDPANKEDVAKVVNSGTSLTDKEEESFSMSDNNLPDISKKSQKAKKNSDGS
                     NSGEQERL"
BASE COUNT         1528 a          664 c          600 g         1527 t
ORIGIN      
        1 tagtctatcg ataactaatt cctgcgttgt tatcccatct ttagataata gttttcggca
       61 tttttggact gtagagagat gtttattgat tattgcttga agtaatctta ccatttatgt
      121 tatacacctt acaaacacct gtacatacct ttaaaagtgt aagtctatta ttaaatctct
      181 ttctagcaaa agaaatcaat aactagtttt acaatattgt gagtagctgt aacagatata
      241 ttcacataag taacaaagat ataatttatt aacggaatac atctaatctc tctgatcttc
      301 tgcaaagtaa tttatagttt attcttactt ctagagaact tttgttaaat atatgaatct
      361 cttagtttct gtattcctta ttctcatgcc gattatactt attgtaagaa aagaatcatc
      421 atatttgtat ttgatgccat tattattctc atttcatgca gagactaaaa atttaggaaa
      481 aaagattggg aatataaaaa gaacaatgct tttaaaaagt atttttaatt ttgaaaagac
      541 ctttatgtta tccaaatgat atgtttaggt taattactta aagcagccaa aagaaaaaag
      601 aacacataaa gtgaaacctc atattaacga aatattatgc ttttaaaagc taaattaact
      661 aacctataca aaagaaaatt cagccttaat ttcgataatg catttgttat taaattgcct
      721 tatagtttta tgtttacatt tcagaaacct ttactcattg ctaaaataca taatttgtgc
      781 aacaagtaat tgcaacgtaa agcatggcat ttttttcaaa ttctgtaact tcttaattct
      841 taggtgtggg cagatattgg aaaggaaaca catttgactc acaattcaga acttagaaaa
      901 ttgcacttat gttcctcaga acaaaattgt tctatcttta aaacacctct attagagtcg
      961 ccttctacat ggggccaacc ttcgcctgaa aatatcttgc cacaataagc acagagtctg
     1021 ttttccatgg tacaaaaaca attagaaccg ttatttggat gttcccccga caaaataact
     1081 atgatcaaat ttgtgttcta caagaacaca aaatcttcca gaagtaacaa atttggctta
     1141 gatttaactc cgtactctcc tattcatgat tttaaatgca taaggtttca tatgtatgaa
     1201 taatattttt atattatata tcattctaaa tttattcatt ctttttaatc caaattttcg
     1261 tttacttaca aatccttcat cctatactaa aggagataat agatatatct atgatttaga
     1321 cctcaagaca tagaataaga agagagagac tttaagtgac ttacattacc taggcatctc
     1381 ttaaataaaa atatcaaata tttgatttag aagtaattaa ctctctagct tatctagtta
     1441 tacctttgga attaattaat aattcatctt agatgtgtag acttttatga ctggcttttt
     1501 cacaaattgg actaagaata aaaagaacca tgtagatgat acaaacaagg aattaataga
     1561 agctctaatt ccaaattctc atgtaaagcc aagaattgaa tgtgtaataa atgatattca
     1621 attacaaatt tcaaaactaa atgttaaaat ttcaaaaatg aaaacaagag aagaaatgct
     1681 ctttaataag gtagttgatg caatgaaaag acacgatatc acccatacaa aaattttgcc
     1741 aattcagtta gctcaactac gaaaaaaaca acgaacacta aatcaagcaa gaattgcatt
     1801 agaacaggtg tcaatgagaa cttctacaat tcacgtatta agtgaaataa ttaaaacact
     1861 agaaccagca atgaatccag ttaaaggatc aaaatcagat tttgaaatat tagtacctag
     1921 tacagataca gaactagact atatgcaaat gcttactaac agtatattgt ctgattcaaa
     1981 tcagaataat gaaatagata ttataggcat gaatattgtt gaattatcgg aaaatgatga
     2041 tataggtcat ataataaatg aggcttcaga ggttgcagaa aaatgtaaca acagtaataa
     2101 taatagattt tcttcattct ctatataaca atcagaagta ttacagatat aagctgtaat
     2161 cagatgagca cgaagtagat gacagctttt ttaagccaaa gtaaagcata gtaagttcaa
     2221 aaaaggagat ttcctgtcgt caagagttat taaatagatc attttttatc tcgatatttt
     2281 tatatagata tgaaacacaa ttttttgtct actaattact tagagaatct attaacttaa
     2341 tatcttctat atttgcctac aacattgctg cagctcaata ggtgatttaa gcagattata
     2401 ttgggggtga tgtaagtaaa agtacggact tgacgtaata ttttctgcag catataatat
     2461 atgatttggt taagttttga aaatgattcc attggaagag agggacatta tttttctgaa
     2521 ggattttgtt gaggttgcta ttgaaacatt aattagcaca acattcttct ttgttttcac
     2581 acttgcaatt attgggttct tgtaaacatg atgggcatat gataatacca caacctacgc
     2641 atctgttatt agatctattg catgcccaat gcttacaatt cttcatatga atctttcatc
     2701 atgatatatt tataaacatc attattgtac cagctatatt ttgctttcaa catctgattc
     2761 agttacagtc tagccatatt aatgaacatg tgttaataac ttacttccac tactcattat
     2821 tatcactttc aagcacacgt ttgttgagtt ggatattatt tattgttatt gactttctat
     2881 caaatttctc tttaagaaac gcctaattat agggaggttg ttaataatat tggtgaattc
     2941 aatatgctag taaaaatcaa caacatcact gggaatatag tcaaagtcac ccgactcgat
     3001 attgacgatt acggttctgt aataccatta aaggagttag agcttaaact tccacctaat
     3061 gataattcga ttatccaaac attgaaaagt tcttctcatg caattatttt cactgaaggc
     3121 aataataagg ataatgataa tagtaatacc ataattttag ccagcagcat tacaaatgat
     3181 gaacttaacg aagagaaaat aaagaccata aatacagtaa ataagaaata attaatattt
     3241 actaacaata tctatttgat ccatatttac cattctatta aaatataaga ataatagatg
     3301 acttgagaac taaatttaag ccatttacat aacaaatttt attctattag atgaaatagt
     3361 atcaaaaaat ctacaaatca gtaatcaatg gagaaggtag aataagaaaa agagattttc
     3421 atcaagaaaa tacgaacttg ggcaacaaga catagaccaa ttaattagag catcttcacc
     3481 ctgacacggc atgatctaac ctagaacatc ctatagtatc atgatttgat cgactggttt
     3541 ttaatataat tggattgatc ctaatataaa aatacagagt tgtcaattat tctctcttta
     3601 atttatattc ggcttcttct tctccctcaa cttctaattc atgatttgga ctgttaaagc
     3661 ctttcttgtt caccactatt actaccatcg ctattttttt tggctttttg cgattttttt
     3721 gatatatctg gtaaattatt atctgacata gagaatgact cttcttcctt atctgttaga
     3781 gatgttccag agttaactac tttagctaca tcttctttat tagctggatc tataatcaaa
     3841 tcctcaggtc ctttctcttt taaatcaata gtggtagcat tagttcgtgt tatttttcct
     3901 tgagttactt ttgttcctct ttcttgtgat ctttttatta tatctgcagc actgccttta
     3961 atttgtgttc ctttattcca agtagctaca tcaggagtgt cagttatatc aagtatatct
     4021 tttgatgtac tgctagcctt tgttatatct atagtagtag tttttgctga ttcttcttct
     4081 tttgaatctt ggtagtcact attatcaact gaaaaatgct tgtctttatt tctgtttgtt
     4141 gctttattat taatgctcat cttcctatga taatctatag cctattttat atttagataa
     4201 gattgtgagg actcagaaat gctatcactg ttgactcaaa taataatata gattaccaag
     4261 acaaaaatgg attgcactaa tggtaaatac aactgtatac tcgagataaa ttcaaagtc
//
LOCUS       DATAAS010000082         3265 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_76059, whole genome shotgun sequence.
ACCESSION   DATAAS010000082 DATAAS010000000
VERSION     DATAAS010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3265
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_76059"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(64..1113)
                     /locus_tag="VHF08_01225"
     CDS             complement(64..1113)
                     /locus_tag="VHF08_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEX2067304.1"
                     /translation="MKAAVFREYNKDPTKVVKIEDIDMPKLKPDEVMIKVESAAYNYN
                     DLWAIWGEPLKTPVPHISGSDVAGNIVEVGEDVTTLKVGDRVVSHSNLSCRVCYMCTS
                     GREYDCNDRLVWGFQTGPLWGGFAQYTYLPEVNVVKIPDNLSFDDAAAISMVGMTSWH
                     MLIGRAKIKPGQTVLIMGGTSGVGMAGIQIAKLYNCNVIATAGNKEKMDKCLELGADD
                     VVNHREADWYKKVRDITKKQGVDVIFEHIGKSTFAQEVSLLKMGGTLVATGATTGYDS
                     TIDLRYLFFKGTNWLGSTQGTKAELEEVIYWTGKGKIKPLINTILPFNDMVKGHVMMA
                     NAEQIGKTLTTPQKL"
     gene            complement(1277..1567)
                     /locus_tag="VHF08_01230"
     CDS             complement(1277..1567)
                     /locus_tag="VHF08_01230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEX2067305.1"
                     /translation="MSAPQSPQPNDEELKRREAEAAAMRQRALMVLLDPAARQRLMNI
                     RIVKPELATAVENYLINAASTGRLNRALTDDELKQILLSLQQPKRDFKINRR"
     gene            complement(1586..2038)
                     /locus_tag="VHF08_01235"
     CDS             complement(1586..2038)
                     /locus_tag="VHF08_01235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19e"
                     /protein_id="HEX2067306.1"
                     /translation="MAKAYDIPAAYLISRLAEQLKKDKKIAPPSWAAFVKTGPHAEKI
                     PQNKDWWYIRCASLVRKVYMHGPIGISDLKSAYGGRKRIGYNLNHHKDAGGAIIRKAL
                     QQLESAGYITKKGKGRLMSDDGMKKIDRLATEIQNEIIKTEPELQRYA"
     gene            complement(2123..2437)
                     /locus_tag="VHF08_01240"
     CDS             complement(2123..2437)
                     /locus_tag="VHF08_01240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase P subunit"
                     /protein_id="HEX2067307.1"
                     /translation="MKKNQIVKEIAKERIRLLIANALVEVRDNERIAYDQAMLAKKIA
                     MRYRLRLPYSIRQLYCKKCKYFIIPGRNARVRIGRSNTKALRITCLECYHTYHKMLLP
                     RN"
     gene            2554..2949
                     /locus_tag="VHF08_01245"
     CDS             2554..2949
                     /locus_tag="VHF08_01245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067308.1"
                     /translation="MVDFDKIEELAKEYIELKKGEQESKSKNAAINLMDLLSSKDFAF
                     PLKKEVAESNGTATYLYLNNKTYPHLFEFIAEILHLEIPIIINNVKFGPGEIIVNSDN
                     EKDAKQQLDSCVKELQKLISGKKNKVFAI"
BASE COUNT          981 a          642 c          542 g         1100 t
ORIGIN      
        1 ctgctgttgc ttgggacaaa aatcaggctt ctaaacatct taacattaga agtacattta
       61 agattatagt ttctgtggcg tggtaagcgt ttttccaatt tgttcagcat tggccatcat
      121 gacatggcct tttaccatat cattgaaagg cagaattgta tttatgagag gctttatctt
      181 tcctttgcct gtccaatata ttacttcttc gagctctgct ttagttccct gcgtagaccc
      241 aagccaattt gttcctttga agaatagata tctcaagtcg atagttgaat cataccctgt
      301 cgtagcacca gtagcgacaa gcgttcctcc cattttcaaa agactgactt cttgtgcaaa
      361 tgtggatttg ccgatgtgct caaagataac atctacgcct tgtttttttg taatatctct
      421 cacttttttg taccaatcag cttctctatg attaactacg tcatcagcac caagctccaa
      481 acatttatcc atcttttcct tatttcctgc agtagcaata acgttacaat tgtataactt
      541 tgcgatctga attccagcca tacctactcc acttgttcct cccatgatca gaaccgtttg
      601 gcctggcttt atcttggctc tgcctattaa catatgccat gaagtcattc ctaccattga
      661 aattgctgct gcatcatcaa aggataaatt atctggtatc ttgactacat ttacctcagg
      721 caaataagtg tattgagcaa aacctcccca tagcggacct gtttgaaagc cccagaccaa
      781 tctatcatta cagtcgtatt ctctgccaga ggtgcacatg taacataccc tgcagctcaa
      841 atttgaatga gaaacaactc tgtctccgac cttcaatgtt gtaacatcct cacccacctc
      901 tactatattt cctgctacat cgcttccaga aatgtgtggc actggggtct ttagaggttc
      961 accccatata gcccacaagt cattatagtt atacgctgct gattctactt ttatcataac
     1021 ttcatcaggt ttcaacttgg gcatgtcaat atcttcgatc ttcacgactt ttgttggatc
     1081 cttattatat tcacgaaata cggctgcctt catacaggtg aagaattctt tatacttaat
     1141 atagttaact agactaatct cgctaaatta atagcgcagg cagataaatc atcacactct
     1201 ctgatggctc tctcctagaa cagcacaaaa aagttgaaga aaaagtctat tcaaaaccaa
     1261 gaatttgaga atatcattaa cgtctattta ttttgaaatc tctttttggc tgctgaaggc
     1321 tgagcaaaat ttgtttcaac tcatcatctg taagagctct gttcaatctt cctgttgatg
     1381 ctgcatttat tagataattt tctacagccg tagcaagctc tggttttact attctgatat
     1441 tcattagcct ctgacgagcc gcaggatcga gcagaaccat taaagcacgc tgtcgcatag
     1501 cagcggcttc agcttcacgt cgctttaatt cttcgtcgtt tggttgtggt gattgagggg
     1561 ctgacatagt attcaaagat aaaaactaag catatcgttg caactcaggt tctgtcttga
     1621 taatctcatt ctgaatttca gtagctaatc tatcgatttt tttcattcca tcatctgaca
     1681 ttaatcttcc tttacctttt ttagttatgt aacccgctga ctccaattgc tgtaatgcct
     1741 tgcggataat tgctccgcca gcgtctttat gatgattcaa attatatccg atcctttttc
     1801 taccaccata tgcactcttc aagtctgaaa ttccgatagg gccgtgcatg taaaccttcc
     1861 tcactaaaga agcacatcta atataccacc agtctttatt ttgaggaatt ttctcagcat
     1921 gcggaccagt cttgacaaaa gctgcccagc ttggaggagc gattttttta tctttcttta
     1981 gctgttcagc caatcttgaa atgagataag cagctggaat gtcataagct ttggccatag
     2041 ttgttactga atattcacga ggcagttccc ttataaatcc ttattctcat ttaagaacat
     2101 tgtttttcaa aaagatatga aattagtttc gaggcaataa cattttgtga taggtgtgat
     2161 aacattccaa acaagtaatt cttaaggctt ttgtattaga tctccctatt cttactcgag
     2221 catttcttcc tggaataata aaatatttac actttttgca gtataattgt cgtatggaat
     2281 agggaagcct cagcctgtat cgcatagcaa ttttctttgc aagcattgct tggtcatatg
     2341 caatcctttc gttatctctg acttcaacta aagcgtttgc tattaaaaga cgaatccttt
     2401 cttttgcaat ctcctttaca atttggtttt ttttcaaaat cgctggctaa ggtgttattt
     2461 taaataagca ttataaatag actgacctat actcaaagac gataaagatt gtatacagta
     2521 attaagctgt cagattaata atatttagac actatggtag attttgataa aatagaggaa
     2581 ttagcaaaag agtatataga attaaaaaag ggtgaacaag aatcaaagtc aaagaatgca
     2641 gcaattaatc taatggatct tctatcatcg aaggatttcg ctttcccgtt gaagaaggag
     2701 gtggctgaaa gtaatggaac agcgacatac ctttatctca ataataagac atatccgcat
     2761 ctttttgagt ttattgcaga aatattgcat ttagaaatac cgattattat caataatgta
     2821 aagtttggac caggcgaaat tatagttaac agcgacaatg aaaaagatgc aaaacaacag
     2881 ctagattctt gcgttaaaga attgcagaaa ttgattagtg ggaagaagaa taaagtcttt
     2941 gcaatataga catctaccat tctctcaaag aacaagaatg gctagaggtt aattgacata
     3001 tatacattga gtacattgac tggtcttact ttaacctgca gaaaatactt tggaatcaat
     3061 taatgagtat taaatgaatt ggcgataagg taattctgat attgttagtt aaatcatatt
     3121 atttcaaata tgattataat gcttacaagt catctagaaa cactaaactg gccattgaga
     3181 taagaaatac tttattatta ttattatttt ttctgaattg gcatattata atgtattctt
     3241 ttaacttcat taaatatctg aaaat
//
LOCUS       DATAAS010000083         2124 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_79680, whole genome shotgun sequence.
ACCESSION   DATAAS010000083 DATAAS010000000
VERSION     DATAAS010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_79680"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..543
                     /locus_tag="VHF08_01250"
     CDS             <1..543
                     /locus_tag="VHF08_01250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067309.1"
                     /translation="VLLIAFVCIITAALTINPLYQVYADSLKNALKQRIGNYEVEMIT
                     DPKSPLIGQNNRISLRFGSVNGDDLIDVPIVIRIFKDNIELEKTDQILVPYGHYNYDY
                     VFPESGRYILYVDVNDVAYSNQILNFIYFIDVPESWNNSSMPLAILTVVLIAIVITTI
                     VSIIFFQRKKKQQSITNTKN"
     gene            1028..1909
                     /gene="uvsE"
                     /locus_tag="VHF08_01255"
     CDS             1028..1909
                     /gene="uvsE"
                     /locus_tag="VHF08_01255"
                     /inference="COORDINATES: protein motif:HMM:TIGR00629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0009650 - UV protection [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UV DNA damage repair endonuclease UvsE"
                     /protein_id="HEX2067310.1"
                     /translation="MKIGYPCINTSIQRHHASTFRLASYSETKLIQTVRDNLAHLGKI
                     LKYNVEDHLLFFRISSDLVPFASHPVCKFNWIDHFKSEFKQMGEYIKANNIRISMHPD
                     QFVILNSSNEKVIDNSINELKYHCNILDAMDLDQTAKVQIHVGGVYGDRHRAIKKFVE
                     CYSTLSESIRKRIVIENDDHLFNLKDCLEIHQQTGIPIIFDNFHHECFNHSKEPIIQA
                     IKKASLTWKVKDGLPMLDYSSQSKGERKGKHATTLDPLLFCNFIKETQRLDFDLMLEI
                     KDKEKSALAALKLLSKI"
BASE COUNT          798 a          297 c          333 g          696 t
ORIGIN      
        1 gttttattga ttgcttttgt ttgcattatt actgctgcat taacaataaa tccgctatac
       61 caagtatatg cagattctct taaaaacgct ttgaagcaaa gaattggtaa ctatgaagta
      121 gagatgataa cagatccaaa aagtcctctc ataggacaga acaacaggat ttcattgaga
      181 ttcggcagtg ttaatggaga tgatctaatt gatgtcccta ttgtcataag aatattcaaa
      241 gataacattg agttagaaaa gaccgatcag atattggtgc catatggaca ttacaattat
      301 gattatgtat ttccagaatc aggaagatac atactatatg ttgatgtaaa tgatgttgcg
      361 tatagcaacc aaattcttaa ctttatctat tttattgatg taccagaatc ttggaacaat
      421 agttcaatgc ccttagctat tcttacagta gtactaattg caattgttat tacaacaata
      481 gttagtataa ttttttttca aaggaaaaag aaacaacaaa gtattacgaa cacaaagaat
      541 tagtaaatca tattcttctt ttgtccatat ttatctaata tccgatcaca ctacttcaat
      601 gaaatgacag ggatctagag atctgttaaa cctgaggtta aagcaaatta gaagaaaact
      661 cgatttgata tagattggtt tattggttta tcagttatgt gctaaatcct ttcatcatag
      721 gaatataatt atattatgtc cagaagttat gcttattctt tcttcatgta tctatgaacg
      781 ccaattttgt ctcaaaaagg tagtgaacaa tatttgctaa ttaaaataat aatatgtcct
      841 gtttaataat gctttggata atttataaaa actctagaaa caaagtgatt aaaactaatc
      901 atttaatact acaataaaga gtttccttat actctataat ctgtatttct tatagacatc
      961 agggctatga gacaagatat tttatttata atgaatacag ctcatcatat tagaaaggta
     1021 atttaacgtg aagataggct acccgtgtat aaatacaagt attcaacgtc atcacgcatc
     1081 tacttttaga ttggcctctt attccgaaac gaaattaatt caaactgtaa gagacaactt
     1141 agcgcatctt ggaaagattc taaaatataa tgtagaagat cacttgctat tttttagaat
     1201 tagttctgat cttgttcctt ttgcttctca tccagtatgt aaattcaact ggatagatca
     1261 ttttaaatca gaatttaaac agatgggcga atatatcaaa gctaataata ttagaatatc
     1321 catgcatcct gatcaatttg tcattcttaa ctcttctaat gaaaaagtga ttgataacag
     1381 tatcaatgaa ttaaaatatc attgtaatat tttagacgcg atggatctag accaaactgc
     1441 caaagtccag atccatgtag gaggagttta tggagatagg catagggcta taaaaaagtt
     1501 tgttgaatgt tattccactt taagtgaatc cataaggaag aggatagtta tagaaaatga
     1561 tgaccattta tttaatttaa aagattgctt ggagatccat caacaaacag gtattcctat
     1621 tatttttgat aactttcatc atgaatgctt taaccacagt aaagaaccaa taattcaagc
     1681 cattaaaaaa gcaagtttga catggaaagt aaaagacggt ttacctatgc ttgattacag
     1741 tagccaaagt aagggagaaa ggaagggaaa gcatgcaact acacttgacc ctttgttatt
     1801 ctgtaatttt ataaaagaaa cacaaagatt agactttgat ttaatgctag aaataaaaga
     1861 taaagagaaa agcgcattag cagcattgaa attattatct aaaatttaaa ttaatggtgt
     1921 caaagaatct atggatttat tcactatgaa atatgacatc gagattatct aaatgtatta
     1981 cagtctaaat caataccatt ataacaattg cagaagaaaa attttaaatg ttagattagg
     2041 acataaaaga gtaaaaatga tacttctata actatgagga aagtagatgc atttataaca
     2101 actgaaaaac agattcgcta ttat
//
LOCUS       DATAAS010000084         3525 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2244379, whole genome shotgun sequence.
ACCESSION   DATAAS010000084 DATAAS010000000
VERSION     DATAAS010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3525)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3525)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3525
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2244379"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..343)
                     /locus_tag="VHF08_01260"
     CDS             complement(<1..343)
                     /locus_tag="VHF08_01260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067311.1"
                     /translation="MYAAALGIEILCIMSAEIGENIGLYTFGFNLHGIVIAYVLGYAL
                     AGFSTFMTILGRYDFNSNNKIDGCCSFLEQNSNKGFLFNLFITFQNFKKGFEQLIHNR
                     NNPENKYIFKTS"
     gene            complement(1059..1133)
                     /locus_tag="VHF08_01265"
     tRNA            complement(1059..1133)
                     /locus_tag="VHF08_01265"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1096..1098),aa:Arg,seq:tcg)
     gene            1462..2268
                     /locus_tag="VHF08_01270"
     CDS             1462..2268
                     /locus_tag="VHF08_01270"
                     /inference="COORDINATES: protein motif:HMM:TIGR02772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0045027 - DNA end binding [Evidence IEA];
                     GO_process: GO:0006303 - double-strand break repair via
                     nonhomologous end joining [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Ku protein"
                     /protein_id="HEX2067312.1"
                     /translation="MGGGLRSIWKGSISFGLVNIPVKLYTATYDKEFSFNQLDNKGHK
                     IQYKKWCSVEDKEIPYSEIKKGYEIAKDNYILIEKEDLDKIKLKTTKTIDIKEFINYN
                     DFDPILVEKSYYIAPDNKASAEKAYSLFVKAIKETNKIAIGKVVLRDKENLVALRAYQ
                     RGMVMHQLRYIDEIKPVNEIEEMPDASQPKIDNKELSLGKTLVENLSNEEFDPSQYSD
                     AYSKQLEQLITSKAQGKTFNSKPDEKDEDTNNNLLEALKASVQKSRLKNK"
     gene            complement(2276..>3525)
                     /gene="ligD"
                     /locus_tag="VHF08_01275"
     CDS             complement(2276..>3525)
                     /gene="ligD"
                     /locus_tag="VHF08_01275"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF045432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HEX2067313.1"
                     /translation="KIRIEKCPVEYVPYTNREPLWVLPNLVVEVKFSEWTSEKIMRSP
                     IFVRFREDKNPYDCIVECERHSNEIVQLTKKNHYYGGGGSSQNYRSAFSNLDKVFWNK
                     TQEHPQFTKNDLIDYYDKIADWLLPYLKDRPLSLSRYPDGIAGRSFYHKNWDNEKPEY
                     VKSVQVYSKSKEATINYLVCNNKDTLLWLANLGCIEMHPWYSRINDYNICTDSNMLYE
                     DKCGLNYPDFIVFDLDPYIYSGKEKKAQEPEYNVKAFKATVDVAYNLKELFNSLNIRS
                     YIKSSGKTGLHIFVPIINSYTFEQTKSFAEVIGKILKKRHPQKITMDWDTSKRNGRVF
                     FDHNQNAKGKTIASIFSVRPTTSATVSMPINWEELCDILPTDFTMLNVSEIVKKKGNP
                     WKELLENKQDINKILQNVVEMSI"
BASE COUNT         1229 a          555 c          500 g         1241 t
ORIGIN      
        1 tacttgtttt aaaaatatac ttattctctg gattattcct attgtggatt aattgctcaa
       61 aacctttctt aaaattttga aatgttataa atagattaaa aaggaatcct ttatttgaat
      121 tctgttcaag aaaggaacag caaccatcaa tcttattatt agaattgaaa tcatatcttc
      181 ctaaaatggt cataaatgta gaaaatcctg ctaaagcata tcctaaaaca tatgctataa
      241 ctattccatg caaattaaat ccaaaagtat aaagtccaat attctcacca atttcggccg
      301 acataataca taaaatttct attcccaatg ctgctgcata catttttttg atgttattga
      361 ataatacaaa gaatgataag gaattagtgt taattttgct attatgaatt gaattacagc
      421 agcatatttt ctttatacaa tttttgcatt tgagtattgc tctcttacat tcacttggtg
      481 agcatttaca ttctgcacaa actagatttt gcaatattta taaaacatat aagtagatag
      541 gataaaataa acatttacta tcatatcttt gactttaatg aataaataca aatagtaaca
      601 aaatatcgtt gtcatttcat caacaacaat ttttattact tatttctaat gtttgttaga
      661 cgcataatca ctacaattga atttcttttg ctattttatt atcctacaaa ttataatgag
      721 aaatctagaa aggattcgac aattgacaat tcctactcta tatcaaaatt aagttttaga
      781 aaagttgaat tttaaattac taaaacaagt cactagtatt ataaattaat gctgcatcat
      841 tgttatagat gttttccctg aagtgtcctc aaaatgagaa tagttcagaa aatacgacta
      901 atgaaaagcg catcttagat agacatctct tgttacaaga gacctaattg gatatacata
      961 tagtgaatct acatcctatt cttattttgt tacattctcc caactactac tttcttactt
     1021 cttttatttt gagtcctaat aaagtagtaa aagtacagcg ggcccgaagg gcttcgatcc
     1081 cttgacctgc ggttccgaag accgctgcga tatcctgact acgctacggg cccaatctaa
     1141 ctgttcattc atcaaggtta gccctatatc aatggaactg atattgtaca tattctctta
     1201 actgattctc tattgctact aataacatga tataggaaac tataggaaac tacttgtatt
     1261 tttattattt tagaaagcct tatttttatt ctttaatctt ttcatttgtt tgataatatt
     1321 gtgcttctga aaactttgtt agatcttgta ctaaagaatt ataatttcat ctttttactt
     1381 aaaataataa gagctaaaag tcttgttatt tttaagtaat gcgcatatat tgtataaaaa
     1441 tagtttatat tgattaatta aatgggtggg ggattaagaa gtatatggaa aggaagcata
     1501 tcttttggac ttgttaacat tcctgtaaaa ctttatacag ccacttatga caaagagttt
     1561 tcttttaatc aattagataa taagggtcat aaaatccaat acaagaaatg gtgttctgta
     1621 gaagataagg aaataccata ttctgaaatc aagaaaggat atgaaatcgc aaaagataac
     1681 tatatactaa tagaaaaaga agatctagat aaaataaaac tcaaaacaac aaaaacaata
     1741 gatatcaaag aatttattaa ttataatgat tttgatccta tacttgtaga aaagagctat
     1801 tatatcgctc ctgataataa ggcttctgct gaaaaggctt attccttatt tgtaaaagca
     1861 ataaaagaga ctaacaaaat agcaatagga aaggtggtgc taagagataa agaaaatctt
     1921 gttgctttac gtgcctatca aagaggaatg gtaatgcatc aactacgtta tattgatgaa
     1981 ataaaaccag taaatgaaat agaagaaatg ccagatgcct cacaacctaa aattgacaat
     2041 aaggaattgt cacttggcaa gacattggtt gaaaatcttt caaatgaaga attcgatcca
     2101 agccagtatt ctgatgctta ttctaagcaa ttggagcaat taataacctc aaaggcacaa
     2161 ggcaaaactt ttaattctaa accagatgaa aaggatgaag atacaaacaa taacttgctt
     2221 gaagcactta aagctagtgt tcagaaaagt aggttaaaaa acaagtaaaa attgcttaga
     2281 tagacatctc tactacattt tgaagtattt tattgatgtc ttgtttattc tctaacaatt
     2341 ccttccatgg attgcctttt ttctttacaa tttcagatac atttaacatc gtaaaatctg
     2401 taggaagtat atcacataat tcttcccaat tgataggcat agatacagta gcggaagttg
     2461 ttggcctaac tgagaaaatt gaggctattg tttttccttt agcattttga ttatgatcaa
     2521 agaagactct tccatttctt ttgcttgtgt cccaatccat tgtaattttt tgtggatgtc
     2581 tttttttcaa aatcttacct attacttcag cgaatgattt tgtttgttca aaagtatagg
     2641 aattaatgat gggaacaaaa atatgcaagc cagtctttcc tgaactcttt atatatgatc
     2701 taatattcag agaattaaaa agttctttca agttataggc aacatctaca gttgctttaa
     2761 atgctttgac attgtattct ggctcctgtg ctttcttctc tttccctgaa tagatatacg
     2821 gatccaaatc aaacactatg aaatcaggat aatttaaccc gcatttatct tcatatagca
     2881 tattagaatc agtacatata ttataatcat tgattctact ataccatgga tgcatttcaa
     2941 tgcagcctaa attagcaagc cacagaagag tatctttgtt attgcataca agatagttaa
     3001 ttgttgcttc tttggattta gaataaactt gtacgctttt tacatattct ggtttttcat
     3061 tatcccaatt tttatgataa aacgatctgc cagcaattcc atcaggatat ctactcaagg
     3121 atagtggcct gtctttcaag taaggcaata accaatcagc aattttgtca taataatcaa
     3181 taagatcgtt tttagtaaat tgtggatgct cttgcgtttt attccaaaat actttgtcta
     3241 gattagagaa ggcggaccga taattctgac tactgccacc tccaccataa taatgattct
     3301 tttttgttaa ttgaacaatt tcattagaat gtctttcaca ttctacaata caatcgtaag
     3361 gatttttgtc ttctctaaac ctaacgaata taggagatct cattatcttt tcacttgtcc
     3421 attcactaaa ttttacttct actacgagat tgggtaatac ccataatggt tctcgatttg
     3481 tatatgggac atattcaaca ggacattttt caatccttat ttttt
//
LOCUS       DATAAS010000085         6487 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_80602, whole genome shotgun sequence.
ACCESSION   DATAAS010000085 DATAAS010000000
VERSION     DATAAS010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6487)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6487)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6487
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80602"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(302..1168)
                     /locus_tag="VHF08_01280"
     CDS             complement(302..1168)
                     /locus_tag="VHF08_01280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetrahydrofolate dehydrogenase/cyclohydrolase
                     catalytic domain-containing protein"
                     /protein_id="HEX2067314.1"
                     /translation="MTGKIIDGLAVAHNVKKQVKKAVDELKSQGIQASLATILVGDDL
                     SSATYIKNKQKAAEDLGITTCDHKLASSVSQRELIDLVNLLNEDEKIHGILVQLPLPS
                     NIDKFAITNTINPAKDVDGLTPFNAGLLLSGSAYLKPCTPAGIIEMLDFYNIDLIGMD
                     AIIVNRSNLVGKPLAMLLLERNATVTICHSKTKDLKGKLRQADIVITAVGNRETFTLT
                     SDMIKPGSIIIDVGIRRYERKITGDVDFEGVREKASWITPVPGGVGPMTVSMLLKNTV
                     YAAYKRKASDNI"
     gene            complement(1268..1966)
                     /gene="purN"
                     /locus_tag="VHF08_01285"
     CDS             complement(1268..1966)
                     /gene="purN"
                     /locus_tag="VHF08_01285"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEX2067315.1"
                     /translation="MLSGELKEEHFACLLGIYPYVSTKIVLINLGILISGRGSNMAAI
                     LSAIKSGNIKNINPAIVISNRTDAAGLKVACEDFGIPTEIVQSQGLKGWDYDKKVISV
                     LKKYDVRSEYGLVCLAGFMRLISAEFVKEYPMQILNIHPSLLPSFPGLHAQKQAIEYG
                     VKVSGCTVHFVDQGLDSGPIVLQRAVEVMDSDTEEELSARILRKEHELYPEAVRLFAE
                     GKIKVMGRKVLLGR"
     gene            2027..3088
                     /locus_tag="VHF08_01290"
     CDS             2027..3088
                     /locus_tag="VHF08_01290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067316.1"
                     /translation="MAAKICFSQCGIVIYSGGKKILLDPNRQTYCDMTFVSHAHTDHL
                     HKKCGKHDFIKSKTLVSRETSLIAEARGYRLSDSQEEQDDGFQLIDTGHILGSRGLLV
                     NDDEIYYTGDISIKERAFMRPAPIPQAHTLIIESTFGRPQYVFPDLREVVHNANKIIS
                     TMYDKGIPVLLMGYPLGKAQLLTELFGHWDPLYVHDSIYKMNSIYSKLGVRLKSTMKH
                     STAEDQNLLLKNKPWIMITPLFHGRNGFIKRMKERYGAITIGFSGWAVDRNYKFMMGL
                     DYALPMSDHCDYEDLVQVVKKCTPKKIYTFHGFAIDFAKTLRKLGFDAEPLLDRDVKR
                     QEKDKGGSSVVSLDNYMNA"
     gene            complement(3089..4189)
                     /locus_tag="VHF08_01295"
     CDS             complement(3089..4189)
                     /locus_tag="VHF08_01295"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX2067317.1"
                     /translation="MQDFEMRTKFGFTQGLNVARLGLDETQVITACQIADRMDYDSIW
                     AMDHSNVPQWKNAVVNDAWLMLAAIGALTHNVELGTCVTDAIRRHPSSIALSTITLDR
                     ITKGRAVLGIGAGEAQNVVDFGIEFSKPVTKFQEQLEVIERLFESDPDNHVNYDGIYY
                     KLINACLQAKSIRKPRPPVYIAAGAPKTLELCAKYGDGWIPIGYTPELFSFHANMIKE
                     HAKKYGRNLSNFQFANDVDIYFTDDGEEAWNKMRNAVKVSLYKPELLKVHNIPQDSEF
                     DFRKYFTEYAMNKPELMQQMKKAALKIPDSVARTAIGIGKPDDVIEMLERFIKAGTNH
                     FIIRYWGEGYFKNIEMFGNKVIPYFRDQEKTN"
     gene            4545..4964
                     /locus_tag="VHF08_01300"
     CDS             4545..4964
                     /locus_tag="VHF08_01300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEX2067318.1"
                     /translation="MSNIMLLPSEIEAKSLIPAIRAILAKKLIKEYDLKEEVVANVLG
                     ITQAAVSNYLRGTRGDVELISKLNSLHEVMRMVDDIARDLSTNKAYTPNTMAKLIELF
                     NYMRYTFIICDVHHSIESNIDEQVCEQCKGTLMGASI"
     gene            complement(4979..6271)
                     /locus_tag="VHF08_01305"
     CDS             complement(4979..6271)
                     /locus_tag="VHF08_01305"
                     /inference="COORDINATES: protein motif:HMM:TIGR00306.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEX2067319.1"
                     /translation="MSSQLSSNIKIVYVLLDGVGDLPHHSLNDLTPLEAAYTPCMDSL
                     TRNGCMGQVISVGKGIAPQSDIAVFNMLGYSFKDGSYVGRGVIESLGCNIDFKEGDLA
                     MRGNFATVDDNLQIIDRRAGRIISKEEAASICKTLNEKIHFSDISASVVIEPTIAHRV
                     TIRFRHDKIKLSEKISNTDPAYDRINGMGIAKSTIDKPHIGISEPQENTVAAKTSAKL
                     VNEFTDQTAKLLRNHPVNNARSKIGKKPINAVLARDSGNRYPDIEPIDRKYGINVACI
                     VDMPVEIGISKILGMRAFKAGDVTDYEQKAIVAAENLEKFNLIYVHIKGPDEYGHDGD
                     AKGKKMNIEDIDKRFFSTLTENLKVKDSTIIISADHSTPCVKKGHSDDPVPVLVSGNK
                     IKKDNSPRFTEKYAMKGSMGLLMGADVLSTAMRMITYR"
BASE COUNT         1921 a         1233 c         1094 g         2239 t
ORIGIN      
        1 agttgatctc gcaaatcctt catattcgat atcttgtaaa agaaaatatt atctcctaca
       61 attacaggca atgccaaaat cttttgccct tctaaaactt tgcttaatat attctgagtg
      121 tttacctcag atccttttgg ataatatgct ccaatcgcct ttgcagattt aaaatttgga
      181 aggctggtaa ctcgttgttg aattaatata ctttttgtat gaatttctct ctctgatagt
      241 gtatttcgtt tctgtatgat cgactgccta atttcatttt tatattcaga tttttttgaa
      301 atcagatatt atcactcgct tttctcttat atgcggcata aacagtattt tttaatagca
      361 tagataccgt catagggccc acgccacctg gtactggagt aatccaagat gccttttctc
      421 tgaccccttc aaagtcaaca tcacccgtta tttttctctc atatcttcta attccaacat
      481 cgattattat ggaacccggt tttatcatat ctgaagtgag agtaaaggtt tcccggttgc
      541 caactgctgt aattactata tcggcttgcc tcaatttacc tttaagatct tttgttttag
      601 aatgacatat tgttaccgtg gcatttcgtt ccaacaatag catagcaaga ggttttccca
      661 ctagattgct acgattaact ataatagcat ccattcctat tagatcaata ttgtaaaagt
      721 ctaacatctc aatgattcct gctggagtac atggttttag ataggcagaa ccacttaaca
      781 atagacctgc gttaaatggt gtaagtccat caacatcttt agcaggatta atagtgttag
      841 ttatagcaaa tttgtctata ttagaaggaa gaggcagttg aactaagatt ccgtgaatct
      901 tttcatcttc gtttaacaaa ttgacaaggt ctattaattc tcgctgacta actgatgatg
      961 ccaatttatg atcgcatgta gtaattccta aatcttcagc agctttttgc ttatttttta
     1021 tatatgtagc agatgaaaga tcatctccta caagtatagt agcaaggctg gcttgaatgc
     1081 cttgactttt caactcgtca actgcttttt ttacctgttt tttaacatta tgcgccaccg
     1141 ctaaaccatc aattattttt ccagtcaatt aatcaagaga aatcaaaagt cactattttg
     1201 cgttactagc aatggataca ttttctttta taaatttcat ttctaagggt tccatataga
     1261 aagttaatta tcttccaagt aatacctttc gacccataac ttttatttta ccttctgcaa
     1321 aaagtcttac tgcttcagga tataattcgt gttcttttct caatatcctc gctgagagtt
     1381 cttcttctgt atctgagtcc attacttcta ctgccctttg aagtacaata ggtcccgaat
     1441 cgagtccttg atctacaaaa tgtacagtgc accccgatac tttgacaccg tattctattg
     1501 cttgtttctg tgcatgaaga ccgggaaatg aaggtaacaa cgatggatgg atatttagta
     1561 tttgcatagg atattctttt acgaattcag cactaataag ccgcataaaa cctgctaaac
     1621 aaacgagacc atactctgat cttacatcat atttttttaa tactgaaatg accttcttgt
     1681 cataatccca tcctttcaaa ccttggctct gaacaatttc tgtaggaatt ccgaaatctt
     1741 cgcaggcaac ttttagtcct gctgcatcag ttctgttaga gattactatc gcaggattga
     1801 tattttttat atttcctgat tttattgcag agagaatggc agccatgtta cttcctctgc
     1861 cggagattag tatcccaaga ttaatcaata ctatttttgt cgatacgtac ggataaatac
     1921 ctaacagaca agcgaaatgt tcctctttta attctcctga taacaatcat atattttccg
     1981 aagaatgtta aaatacagct tataataaca aattaaaact aaccaattgg ctgctaaaat
     2041 ttgtttttct caatgtggta tcgttatcta cagtggtggt aaaaaaatat tgcttgatcc
     2101 taatagacag acttactgtg atatgacttt tgtttctcac gcgcatactg atcatttaca
     2161 taaaaagtgt ggcaaacatg attttataaa aagtaagact ttggtctcaa gggaaacttc
     2221 gttgattgct gaagcacggg gatataggtt aagtgattca caagaagaac aagatgatgg
     2281 atttcaatta attgatacag gacatatttt aggctcgaga ggattgttag taaatgatga
     2341 tgagatttat tatacaggag atatctcaat taaagaaaga gcatttatga gaccagctcc
     2401 aattcctcag gctcacacat tgataataga atcaactttt ggcagaccgc aatatgtttt
     2461 ccctgatttg cgcgaagtcg tacataatgc caacaagatc atttctacga tgtatgataa
     2521 aggtattcct gtccttctaa tgggttatcc tttgggtaaa gcccaactat taacggagct
     2581 ttttgggcat tgggatccat tatatgtaca tgattctata tataaaatga actccattta
     2641 ttccaaattg ggtgtacgtt tgaagagcac aatgaaacat tccactgcag aagatcaaaa
     2701 ccttctttta aaaaacaagc catggatcat gatcacgcca ttatttcatg ggagaaacgg
     2761 ttttataaaa cgcatgaaag agagatatgg cgctattaca ataggattta gcggatgggc
     2821 agtcgacaga aattacaagt ttatgatggg acttgattat gctttgccta tgagcgacca
     2881 ttgtgattat gaggatcttg tccaagttgt gaaaaaatgt actccaaaaa agatctacac
     2941 atttcatgga ttcgcgatag attttgccaa gacattgaga aagctcggtt tcgatgctga
     3001 acccctttta gatagagatg tgaaaagaca agaaaaagat aaaggtggtt cgtctgttgt
     3061 ttctcttgat aattatatga atgcttgatt aattagtttt ttcctggtct ctaaaatatg
     3121 gaataacctt gttaccaaac atttcaatgt tcttaaagta accttcgccc caatacctaa
     3181 taataaaatg attcgtgccg gccttaatga agcgttcaag catttctatt acatcatctg
     3241 gttttcctat gcctattgct gttcttgcaa cgctatctgg tattttcaat gcagccttct
     3301 tcatctgttg cataagttct ggtttattca tggcatattc tgtaaaatat tttcgaaagt
     3361 caaattctga gtcttgaggt atattatgaa cctttaacag ctctggtttg tataggctaa
     3421 cttttactgc atttctcatc ttattccaag cctcttcccc atcatctgta aagtaaatgt
     3481 caacatcatt cgcaaattgg aagttagaca gatttcgtcc gtattttttt gcgtgttctt
     3541 taatcatatt agcatgaaag ctgaataatt ctggggtata acctatagga atccatccat
     3601 caccatattt tgcacataat tcaagtgtct ttggtgctcc tgccgcgata tatactggtg
     3661 gtcgtggttt acgaatactt ttagcctgaa ggcatgcatt aattaatttg taatagatac
     3721 catcgtagtt gacatggttg tctgggtcag attcaaaaag tctttctatt acttctaatt
     3781 gttcttggaa tttagttact ggcttgctaa attctatacc gaaatctact acattctgcg
     3841 cttctcctgc tccaatacca aggacagccc tgccttttgt aattctatct aaagtaatag
     3901 tcgaaagcgc aatcgaagat ggatgtcttc tgatagcgtc tgttacacat gtgcctagtt
     3961 ctacgttgtg cgtaagagct ccaatggccg caagcataag ccatgcatca ttaacaacag
     4021 catttttcca ctgtggaacg tttgaatgat ccatagccca aattgaatca taatccatcc
     4081 tgtcagctat ctggcaagca gttataacct gagtttcatc taacccaagt cttgcaacat
     4141 tcagaccctg cgtaaaacca aattttgttc tcatttcaaa atcttgcatc ctccatagga
     4201 agttaatagt tgaaacaatg taggaaaccc attactcatg ttaaaataag aaaccaaatt
     4261 agcacctatt taagtttgtc ttgcttattt agaaaacgat cgctcttctt aatctgctag
     4321 tgtgtaatag ttatgtatga ccaacctcta tatactaaag actacacaat atgtcctaaa
     4381 attcttgaat ttatagatta tgatcagatt caagttatta tcatttttgc tagaacaaca
     4441 tcatatcatt atggtgcagc agtctagtgc cttagttatt taaagaaaca caccattcat
     4501 tctgcttaca aagaaacttt atataagaat ttgatggatt tgtattgtct aatataatgc
     4561 ttctaccttc tgaaattgag gctaaatctt tgattccggc gatcagagct attttagcaa
     4621 agaaactcat caaagagtat gacttaaagg aagaagttgt ggctaatgta ttaggtatca
     4681 ctcaagctgc agtaagtaac tatttgagag ggacaagggg tgatgtcgaa cttatctcta
     4741 aacttaactc tttacatgaa gttatgcgca tggttgacga tattgcaaga gatctctcaa
     4801 ctaacaaagc ctatacccct aatactatgg ccaaattaat tgaattattt aattatatgc
     4861 gctacacatt tattatatgt gacgtccatc acagcataga gtcaaatata gacgaacagg
     4921 tttgtgagca atgcaaaggt accctcatgg gggccagcat atgagattta ccgataaatt
     4981 atcgataggt tatcattctc attgcagtcg aaagcacatc agcacccata agtaatccca
     5041 tactgccttt catagcatat ttttccgtaa atcttggact attatctttt ttgattttgt
     5101 ttcctgatac caatacagga actgggtcgt cgctatgtcc tttttttaca catggagtgg
     5161 aatggtcggc agaaataatt atggtcgaat ctttaacttt taagttttct gtaagtgttg
     5221 aaaagaacct cttatcaata tcttcaatat tcatcttttt tccttttgca tcgccatcat
     5281 gtccatattc gtcgggtcct tttatgtgaa catagataag attaaacttc tccaagttct
     5341 ctgctgcgac tattgctttt tgttcatagt cggtgacgtc accagcctta aaagctctca
     5401 ttcctaagat tttggagata ccaatttcca caggcatatc tacaatacat gccacattga
     5461 tgccatattt tctatctatt ggttctatgt ctgggtatct gtttccagaa tcccgagcaa
     5521 gaacagcatt aatgggtttc tttcctattt tggaacgggc attattgacg ggatgattcc
     5581 tcaataattt agcagtctga tctgtaaatt cattgaccaa ttttgctgat gtttttgctg
     5641 ccactgtgtt ttcttggggt tccgatatac caatatgagg tttatctatt gtagatttgg
     5701 ctattcccat cccattaatt ctgtcataag ccggatcggt atttgatatc ttttcggata
     5761 actttatctt gtcatgtcta aaacggatag ttactctatg agcaatagtt ggctctataa
     5821 caactgacgc acttatgtca ctaaaatgaa ttttttcgtt caatgtttta caaattgaag
     5881 cagcttcctc cttactgata atccttccag ctctcctgtc gataatttgt aaattatcat
     5941 caactgtagc gaagtttccc cgcattgcta agtcaccttc tttgaaatct atattgcagc
     6001 caagtgattc tattacaccc ctgccaacat aactgccatc tttgaaacta tagcctagca
     6061 tattaaatac cgctatgtca gattgtggag ctattccctt tcctacacta atcacttgcc
     6121 ccatacatcc gtttcttgta agtgagtcca tgcaaggtgt gtatgctgcc tcaagaggtg
     6181 tcaaatcatt taaggaatga tgcggaaggt caccaacacc atcaagaaga acatatacaa
     6241 tcttgatatt gctactgagt tgggaagaca tgtacaactt agattattac tcgtaaattt
     6301 atctgtagtg gaatattaca attacacatc atgttatggt ttcagtgtaa cgaattgtaa
     6361 tttttagata tttatgaata taaaataatt atcatctaac cataagttga tagtgtcgtc
     6421 tagtcatatg gatcgatgat gagtttttct ggctatatcg tctttgatgc tttttagagc
     6481 ataaaat
//
LOCUS       DATAAS010000086         3153 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_80790, whole genome shotgun sequence.
ACCESSION   DATAAS010000086 DATAAS010000000
VERSION     DATAAS010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3153)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3153)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3153
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_80790"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            211..1353
                     /locus_tag="VHF08_01310"
     CDS             211..1353
                     /locus_tag="VHF08_01310"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEX2067320.1"
                     /translation="MFPYEDLPTKLYSISKNKNENKNWKKIIVRRDKKKLSNLLFHSD
                     NIDAMNHLIKLGFSEKIDLVYIDPPFWSGKKYFHRIKNAQNIAFEDIWKRQINVYLDM
                     IYPRLHTIQKLISQSGSIFVHLDWHIVHYVKVIMDEIFGHENFRNEILVKRGRRKNLL
                     YQFQSIDRMHSANDTILWYSKSVNTKFSHPLAKHTSNSKWMGFWSNVDRPTMRYEIFG
                     IVPERGQWKWRKVRALKAIENYKHYKERFSSIPLEEYWVQTNKKLEFIRKREGIKYAE
                     YWIPPKNYRILDNVWMDIETYNYSTGYGTEKHTELLERIIGQFSKVGDLVADFFCGSG
                     TTLLVAQKLARKWIGCDSSSLAMEVTKRRLEGSEFNLINIPSCSRL"
     gene            1467..1898
                     /locus_tag="VHF08_01315"
     CDS             1467..1898
                     /locus_tag="VHF08_01315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit beta"
                     /protein_id="HEX2067321.1"
                     /translation="MGFQTKSDYEGLLKRLEDKIGNTYRKEASRLEVPTPQIIWVGQR
                     TFFRNFMEFPKALRRDPEKLLLYLNKELASAGYIAGERVIFLGRKEPSSFGALIDRYI
                     KDYVICPVCGSPDTRTEKNKKLGFLLCEACGARSSIKGNYA"
     gene            complement(2003..>3153)
                     /locus_tag="VHF08_01320"
     CDS             complement(2003..>3153)
                     /locus_tag="VHF08_01320"
                     /inference="COORDINATES: protein motif:HMM:NF014433.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ArsA family ATPase"
                     /protein_id="HEX2067322.1"
                     /translation="KTVTSCSTAIKLSEHNYKTLLISSDPAHTLSDAFMMPDIGYESK
                     EVVPNMYALQIDPVTEMSKQYDKILSYLASIFSAKGIDETLAYEIAMLPGMTQLFSLL
                     KIEEVVREKIFDAVVLDMPASGEALRYLYFPKVIGSIGKKFTGLMGMFSGVTRMFQPL
                     SKTTSLPAKNVLQSEIDLLDRLEMLSDIIRNPNITSIRLVANPDTFSIENAKRAFMSA
                     SLYGINVDLAIINKIIPPGSPDENYANWAATQRTKIEEAKANFYPLPVKEIKLYTNEL
                     RGVEMLRENGELIFENQDPATVFYHGKAFAFITEDSKLRMTVKVPFTEKDDFDVERHG
                     DQLTIKVKNPVGYLVNIVPLPTATIGMKLAKAKLQGDELNVLFEKYLQ"
BASE COUNT         1088 a          523 c          529 g         1013 t
ORIGIN      
        1 cttttatgcc atctgaaaaa gtatgcaaaa taatttttat gactgtttga tctttaagaa
       61 tctactactc tattcatata ctaaaaattt tctattagga tgaaaatagg catgaattgt
      121 atacaattaa gaaatcatag attaaggaaa tattgttaaa ctatttggaa gccgatttaa
      181 ttattaataa ccttttataa tagttcaaat gtgttccctt atgaagatct gcccacaaaa
      241 ctttattcaa tatcaaagaa taaaaatgaa aataaaaatt ggaaaaaaat aattgtaaga
      301 agagataaaa aaaagctctc taacttactt ttccattcag ataacattga tgccatgaat
      361 catttaataa aactagggtt ttcagaaaag attgatctcg tatacattga ccctccattc
      421 tggagtggca aaaaatattt tcatcgcata aaaaatgctc agaatattgc atttgaagac
      481 atatggaaac gacaaattaa cgtatatcta gatatgattt atcctcgact acatacaatt
      541 caaaaactga tctcacaatc tggttcgata tttgttcatc ttgactggca tattgttcat
      601 tatgtaaaag taatcatgga tgaaatcttt ggacacgaaa attttcgtaa tgagatctta
      661 gttaaaagag gtagacgaaa aaatctactt tatcaattcc agtctattga tagaatgcat
      721 agtgcaaatg atactatact gtggtattca aaatctgtga atacaaaatt ttcgcatcca
      781 ctagctaagc atacttcaaa ttcaaaatgg atggggttct ggagcaatgt agatagacct
      841 actatgcgct atgaaatatt tggcattgtt ccagaaagag gacagtggaa atggcgtaaa
      901 gtcagagctc taaaagcaat agaaaactac aaacattata aagagagatt ttcttctatt
      961 cctttggaag aatactgggt acagactaac aagaaactag aatttattcg taagcgtgaa
     1021 ggtataaaat atgcagaata ctggatccca ccaaaaaatt acagaattct tgataatgtt
     1081 tggatggata tagagacata taattattca acaggatacg gcacggaaaa acacacagag
     1141 ttattagaaa gaataattgg acaattttct aaagttggag atctggttgc agatttcttc
     1201 tgtggctcgg gtacaacctt attagtagca caaaaattgg caagaaaatg gataggatgc
     1261 gactcatctt ccttggcaat ggaggttaca aaaagaaggc ttgaaggttc tgagtttaat
     1321 ctaatcaata taccttcgtg tagtcgtcta tgatatagca gaatggtctt aatctaataa
     1381 acttaattac ttaaagttgc tcactttccc tcctcttcct cctcgcatac ataacgcaca
     1441 ttaaacagaa tgtcaataca aagaatgtgg gatttcaaac aaaatcagat tacgaaggtt
     1501 tactaaagcg tctagaagat aaaataggca atacttatag aaaagaagca tcaagactag
     1561 aagttccgac tccccaaatt atctgggttg gtcaacgtac attttttaga aatttcatgg
     1621 aatttcctaa agcattgaga agagacccgg aaaaattact actttatctc aataaggaac
     1681 ttgcctctgc tggctatatt gctggtgagc gagtaatatt cctgggacgc aaagagccat
     1741 catcttttgg agcattgatc gatagatata tcaaggacta tgtaatttgc cctgtttgcg
     1801 gaagcccaga tactagaaca gaaaagaaca aaaaacttgg atttcttcta tgtgaggctt
     1861 gtggtgctag atcttcaatt aaaggaaatt atgcataaat ttaggattta tttaatatta
     1921 actctattga ctatttgtta aacataacga aaaattgaac agtcatcatc ttagccgata
     1981 cagtatgata tctaaaattc atttattgaa gatacttttc gaatagcaca tttaattcat
     2041 cgccctgtaa ttttgctttc gcaagcttca tacctatagt agcagtaggt aatgggacaa
     2101 tattaacaag ataacctaca ggatttttga cttttatagt aagttgatct ccatgacgtt
     2161 ctacatcaaa atcatccttt tcagtaaatg gaaccttaac tgtcattcgt aatttggaat
     2221 cctctgttat aaatgcaaat gcctttccat gatagaagac tgttgcggga tcttgatttt
     2281 caaatattaa ttctccgttc tctcttaaca tttcgactcc acgtaattca ttggtataaa
     2341 gtttaatttc ctttacagga agtggataga aatttgcttt tgcttcttca atctttgtcc
     2401 gttgagtagc tgcccaattt gcataattct catcaggact gcctggtggt atgattttat
     2461 taattatagc aaggtcaacg tttattccat aaagactggc ggacataaat gctcttttag
     2521 cattctctat actaaatgta tcaggatttg cgaccaatct tatacttgtt atattcggat
     2581 tccgaataat atctgatagc atctcaagtc tatccaatag atctatttca ctttgtaaaa
     2641 cattctttgc aggtagcgag gtagtctttg atagaggttg aaacatccta gtaactccgc
     2701 taaacattcc cattaatcca gtaaattttt ttccaatact tccaattacc tttggaaagt
     2761 aaaggtatcg cagtgcttct cctgaggcag gcatatcaag aactacggca tcaaatatct
     2821 tttctcgtac aacttcttct attttcaaca aagaaaatag ctgagtcatt ccaggtaaca
     2881 tggcaatttc atatgcaagt gtttcatcaa taccctttgc ggaaaatatt gatgctaaat
     2941 aagaaagaat tttatcgtat tgtttactca tctcagttac aggatcgatc tgcaatgcat
     3001 acatatttgg aaccacctct tttgattcat atccaatatc tggcatcata aaagcatcac
     3061 ttaaagtatg agcaggatca gaggaaatca gtaaggtctt gtaattatgt tcagaaagtt
     3121 tgattgcagt agaacaggaa gttacggttt ttc
//
LOCUS       DATAAS010000087         3821 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2780876, whole genome shotgun sequence.
ACCESSION   DATAAS010000087 DATAAS010000000
VERSION     DATAAS010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3821)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3821)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3821
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2780876"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(279..578)
                     /locus_tag="VHF08_01325"
     CDS             complement(279..578)
                     /locus_tag="VHF08_01325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067323.1"
                     /translation="MSNNKQFLLQQLMWIAIYFAISLAISIIIPFPYSLIAIIGVVLL
                     LSFYVRKRMMRKMGFGMGNFSMFGSGSINYYCMACGTKHNEVACPKCGSKMKRVG"
     gene            1033..1215
                     /locus_tag="VHF08_01330"
     CDS             1033..1215
                     /locus_tag="VHF08_01330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067324.1"
                     /translation="MSSDKSVQYDGEFIKVVIIPGFKEDEPWNKIDEMLREGFTIKSV
                     VGYNTNMSRVILEKIR"
     gene            complement(2131..2796)
                     /locus_tag="VHF08_01335"
     CDS             complement(2131..2796)
                     /locus_tag="VHF08_01335"
                     /inference="COORDINATES: protein motif:HMM:NF019429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfuA-like protein"
                     /protein_id="HEX2067325.1"
                     /translation="MNKPIIFLGPSLSHDKARKIFEADFRGPAKKGDLLRLSSIIDDT
                     TIVGLVDALFLQDYPPSPIEVYQLMLNKNIILLGAASLGALRAVELEKFGMIGIGKIF
                     ELYKKGKLTADDEVAVTFVEGEHYLQSEAMIDIRFNLFLAYKRGIINDITKKTIAKIA
                     KRIYFPYRNYADILEQTEKQYPTISADVKLFRNYIIENRQSLQEHDTIKLIKYAKKRF
                     IQI"
     gene            complement(2789..>3821)
                     /locus_tag="VHF08_01340"
     CDS             complement(2789..>3821)
                     /locus_tag="VHF08_01340"
                     /inference="COORDINATES: protein motif:HMM:TIGR00702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HEX2067326.1"
                     /translation="SGGPKNFIKGSYDQLSKSFHVLHPDEIVEPVRFQYKNDMLMDFL
                     PGFDIFTNKEIMVPASLALFRYSPVPPFLNPFAFHHTNGLASGNVMEEAICHALCEVI
                     ERDAMSIAELRASAIPFHFLRHMINVLKSNGYEINSNFVDKYVDDPSVFPDVNISQIE
                     FQPVQVLVRKFAEANIPLIIKDITSDIGIPTFNASSVEWITHDYGYLAEGHGTHPDKR
                     IALLRAITEVSQTRAANIQGARDDLRKIKYRENNTDDKRAWQFMQSSRTINFTDVPSY
                     FNYDILDDIKLILEHLKQAGLSRAIIVNLTNDSIKIPVVRAIVPGLETFKITKSVMGW
                     RARRYFKNE"
BASE COUNT         1282 a          634 c          587 g         1318 t
ORIGIN      
        1 ctgtgattac agacagatat aaaaatgata tataaattat ctagatccaa agtgagataa
       61 ctatttgtat tagatgagca taaaaaattg attcctgtat aaccaaataa atgaatttta
      121 aaatatcatt atctgaattc acttgtgcaa tggaaaatga taataatata catatgacca
      181 tcatctcatc tcatagttag atggcttctt tttgagattt tacaaagaaa acgtatacag
      241 caaaatcata tttaggaacc gatttgaagc gttaattatc atcccactct tttcatcttt
      301 gaaccacatt tagggcaggc aacttcatta tgctttgttc cacaagccat acaatagtaa
      361 tttattgaac ctgaaccaaa catagaaaag ttgcccattc caaaacccat ctttcgcatc
      421 attctttttc ttacgtaaaa acttagcaat aagacaactc ctattatagc aatgagagaa
      481 tatggaaacg gtattataat tgaaatagcg aggctgatag caaaatatat agcaatccac
      541 attaattgct gcaagagaaa ttgcttgtta ttactcaaat tatattctca tctgtcatat
      601 aaattctcta agatttaaaa ttatgtgatc tagaaaagac gtgtaataaa tatatcctca
      661 tcagttagat aacatgtcta aaacattctt atatttcaga atagattccg tatattaaga
      721 aaaatataca cacttattgt tataaattgt tttttcattt aagacaaaac attagacaat
      781 atgcgaggtt gacatctttc ctaagacata attttgcccc aacacggctc tctctgtaat
      841 tacgattgtc ttgtctgatt agatcctccg aatagttcct atatgggaaa ttataaaata
      901 ctatatcgta aaatgttcat aaattgatat gataaccatc aatttcataa taatgagcaa
      961 tgacaagact cttctctatg ccagccaatc attaagatga tcattaaata attctctacc
     1021 ttaatgatta taatgtctag tgacaagtca gttcaatatg atggagaatt tataaaagtt
     1081 gtaataattc ccgggttcaa agaagatgaa ccctggaata aaatcgatga gatgttacgg
     1141 gaaggcttta ctatcaaaag tgtagtcggt tacaatacta acatgtcaag ggtgatattg
     1201 gagaagatca gataattata gaaatgatgt cattttttga tctagtagcc ttactacata
     1261 gaaagttaaa tattttatta ttccaggatc agcattagtt taatgatttg gataatacta
     1321 atagaatgcc atgaactact tactgatata catcagtgag tatcatctga gagatctatt
     1381 atgaaagaca gaagatgaaa agaaggcttg tgctaaatat gtcaaaatat gtattatcac
     1441 actgtaatgg atggcaagga tatttcttaa tgactctaat atatcggaca tagttagtga
     1501 gatcattaag taaaagaaag aagagcaata atgaataaga atttggctat tgttatctct
     1561 cgtagtcgac ctccaattac catcattgtc tgcatatctt taacttttct aattactcta
     1621 ttgagctaac tgatgagtcc ttttaaaata tttactctac caacttgttc tccacgatta
     1681 ttataatagg ataatcatat ttgataattt caaaatatat cacaattgtt tcaagttcat
     1741 atgattacga tttctttcat tcctagttat acttaagaca atgctcttgc atattatagt
     1801 ttaagtctat atgtattagt aacaaaacta tcattatagt tctaaatata caatctatcc
     1861 tcttgctcaa ttatttagcc aataaagcat taaaaaacca tagataagag atgctttctg
     1921 atccggattt tgtatatcat ttatctggat tatcataata atcgtatttt agattcttga
     1981 attttagaag gagcccttga tggaagagta tgttttaaca tataactcct tgtcatagtc
     2041 taaatttgaa ttttctacct gtacatataa gggaagtcga actattatta gctagttaaa
     2101 agacagaatg atacaaatca gatacaggtt ttaaatttga atgaatcgtt tctttgcata
     2161 tttaataagt tttattgtat cgtgctcctg taagctttgc ctgttttcaa taatataatt
     2221 gcgaaacaat tttacatcag ccgatattgt aggatattgc ttttctgtct gttcaagtat
     2281 gtcggcataa ttcctatagg ggaaatagat ccttttggca attttagcta ttgttttttt
     2341 agtaatatca ttaattattc cccttttata cgctaaaaat aaattaaatc gaatatcaat
     2401 cattgcttca gattgaagat aatgttcacc ttctacgaag gtaactgcaa cttcgtcatc
     2461 agcagttaat ttacctttct tgtaaagttc aaaaattttt ccaattccaa tcattccgaa
     2521 tttctcaagc tctactgcac gcaatgcgcc aaggctcgcg gcaccaagta gaattatatt
     2581 tttatttaac ataagttggt agacttctat tggtgaagga ggataatctt ggagaaataa
     2641 tgcgtctact agaccgacta tcgttgtatc atctataatg cttgagagtc tcaacagatc
     2701 accttttttt gcgggacctc taaaatctgc ttcaaaaatt tttcttgctt tgtcgtggct
     2761 tagactggga cctagaaata ttattggttt attcattttt aaagtacctt cttgctcgcc
     2821 aacccatgac agactttgta attttaaaag tctcaagacc aggcactatg gcccgcacaa
     2881 caggtatttt gatgctatca ttggttaaat tcactatgat cgccctgctt aatccagctt
     2941 gctttagatg ttctaaaatt agttttatgt catccagaat atcgtagttg aaatatgaag
     3001 gaacatcagt aaaatttatt gttctactcg attgcataaa ttgccatgca cgtttatcat
     3061 ctgtattgtt ttctctgtat ttgatttttc gtagatcatc tctagcgcct tggatgttag
     3121 ctgctctagt ttgtgatacc tctgttatag cgcgcaatag agcaatgcgt ttatcaggat
     3181 gagttccatg gccttcggca agatatccat aatcgtgagt tatccattcg acactgctag
     3241 cattaaatgt tgggattcca atgtccgatg taatatcctt aataatcaaa ggaatgttcg
     3301 cttctgcaaa ttttcttact aaaacttgaa ctggttgaaa ttcgatttgt gagatattta
     3361 catcaggaaa tacactagga tcgtctacat atttatctac aaaattagaa tttatctcat
     3421 atccattcga cttcaataca tttatcatat gccgtaaaaa atgaaatggt atagcactgg
     3481 cacgtaattc agcaatactc atcgcatcgc gctctatcac ttcgcataaa gcatgacaaa
     3541 tcgcttcttc cataacgttg ccagatgcta gcccatttgt atgatgaaaa gcaaatggat
     3601 taagaaaagg agggacaggt gaataacgaa ataaagctag tgacgctgga accattatct
     3661 ctttatttgt aaatatatca aaaccaggta ggaaatccat taacatatcg ttcttatatt
     3721 gaaatctaac aggttctact atttcatctg gatgaagaac atgaaatgac tttgacaatt
     3781 gatcatagct acctttgata aaattttttg ggccaccact t
//
LOCUS       DATAAS010000088         3332 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_81876, whole genome shotgun sequence.
ACCESSION   DATAAS010000088 DATAAS010000000
VERSION     DATAAS010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3332)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3332)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3332
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_81876"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VHF08_01345"
     CDS             <1..180
                     /locus_tag="VHF08_01345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067327.1"
                     /translation="RHMISDSENHDMLSFYPKDMVIFYHSKSGYVVERRKHRAEEISD
                     LRHACIYGQTKLAGV"
     gene            complement(655..804)
                     /locus_tag="VHF08_01350"
     CDS             complement(655..804)
                     /locus_tag="VHF08_01350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067328.1"
                     /translation="MAMRKIMVALPHDMVKILEKERKDRYLETIPETIRVILSEYLRT
                     KVHSK"
     gene            complement(1314..2657)
                     /locus_tag="VHF08_01355"
     CDS             complement(1314..2657)
                     /locus_tag="VHF08_01355"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX2067329.1"
                     /translation="MTKTFQELGMSAEINRALKENKFEAPFPIQEAAIPFLLKGIDVV
                     GQAHTGTGKTAAFSLPILMKVKRNGPIQALILVPTRELAMQVTTEINKFAKYTGIRTV
                     SIYGGQSINLQHDQLRRGVQIVVATPGRLIDHVKHGSIQLENVKYVVLDEADRMLDMG
                     FIDDIKFILFYVNDDRQTCLFSATMPPEILRLAQEYMKDIQQIRLNEEELSLDTIDQS
                     YLIVQEREKFKHLCNLIRSRDKKQTIVFAATKQRTQKLAWELKQEGFKAITIHGDLSQ
                     KQRDNAMYRFKKGIEDVLVATDIAARGIDVPAVGHVINYDIPEDPLIYFHRIGRTARA
                     GGTGRAISLVSQDRIEDFGRILRQTEHPIRKLNEELGIEVPVVQYRSHGYRQRRSYGN
                     NSFRGSGSYGDTRGKRSFGSRYGSSAYGGYGGNRSERNRYGQGQSNRDDRRSRYY"
     gene            3043..3222
                     /locus_tag="VHF08_01360"
     CDS             3043..3222
                     /locus_tag="VHF08_01360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067330.1"
                     /translation="MVSKVLITSGTQQTALDDQELKEVINAIIYASNQSEQSKNFEQV
                     KRYKALLAKLEPLSK"
BASE COUNT         1067 a          608 c          539 g         1118 t
ORIGIN      
        1 agacacatga tttcagattc tgaaaatcac gatatgcttt ccttttatcc caaagatatg
       61 gtaatttttt atcattctaa aagcggatat gtagttgaaa gaagaaaaca tagagcagag
      121 gagattagtg acttacgaca cgcttgtatc tacggtcaaa caaagttagc tggcgtatag
      181 tttaattaga attgcaattt cttagagttc tgctacagac ttcaattatt atttacttca
      241 gatatgacaa taactcatga gcaatactgt gtgatctacc aacctagtta gtgtgaattt
      301 ctatgtttta tagatcggat gcattatcat ctaagggata ggcaaaataa tgaatactca
      361 accaatatgt tatatacact tttgagtttc catgacaata gtcagtgtta taagacaata
      421 aaccatctgg aacttggctt agtagccatt tagactatat attgattaaa tcattacata
      481 gttaactcgt tgtgcgctct ctgtctgtct atcaaatatt gtttcttctg actagtattt
      541 gtttaaaaaa tttatctact agttttttag tagagtttgg aagcatcgat ttagcatagg
      601 tatgaaaata aaatcctaga acatattatt gtgtaatact aataaatagc ataatcattt
      661 agaatgaacc tttgttcgca ggtactcact taatattact ctgatagttt caggtattgt
      721 ctcaagatat ctgtctttac gctccttctc taatatttta accatatcat gcggtaatgc
      781 taccatgatt ttcctcattg ccatgttaag ataccattat atattgttag atgttcttat
      841 aaacctgtct ctacaataac aatccaacag ttctttgaaa ggctagatat aggatgaaaa
      901 tgctataagt agagatatag tagctagttt gatgatgatt attataaaga gccggtaaga
      961 aaaaaatcaa tagtacttga agtggaattt aagtttaatt tcctgcttga tttatcgata
     1021 agtgggcatt agcagggtaa aagtattgaa aaattttaca tgtatattat tttgtgacat
     1081 cctgttatta atagaaaaac agattataag acttagaaaa agccaatatt attatgataa
     1141 agatatttaa ctttttaaaa aagatgttaa attctgttaa taatatttct attagtacaa
     1201 aattcataga aaattgccat agatgctatt ataagcacat atattcgata taaggctggt
     1261 aaaaaatagg ttaagtcaca taaaaagact aactaacaat acatattgat aaactagtaa
     1321 tagcgacttc gtctatcatc tctattactt tgtccttggc cgtatctatt tcgttcactt
     1381 ctatttccac catagcctcc gtaagcacta ctgccatacc tagatccaaa gcttcgttta
     1441 cctctagtat cgccataact tccgcttcca cggaagctat tattaccata acttcgtctt
     1501 tggcgatatc catgagatct atactgaact acaggaactt caattcccaa ctcttcattt
     1561 agcttgcgta taggatgttc agtctgtctc aaaattctcc caaagtcttc gatcctgtct
     1621 tgggaaacta aggaaatagc ccgacctgtg cctcctgctc tagcagttct tccaattcta
     1681 tggaaataaa ttaatgggtc ttcaggtatg tcgtagttta tcacatgacc tactgctgga
     1741 acatctattc cccttgctgc aatatcagta gctactaaga catcttcaat tcccttttta
     1801 aatcgataca tggcattatc tctttgcttc tgggatagat cgccatgaat ggtgattgct
     1861 ttgaatcctt cctgtttcaa ctcccaagcc aatttctgcg ttctctgttt tgtagccgca
     1921 aaaacaattg tctgtttttt gtccctgctc ctaattaagt tacagagatg tttaaatttt
     1981 tctctttcct gtacaattaa ataagattga tctattgtat caagacttaa ttcttcttca
     2041 ttgagcctga tttgctgaat gtccttcata tattcttgag ccaacctcaa tatctcaggt
     2101 ggcatagttg cagaaaacaa gcatgtttgc ctatcgtcat tcacatagaa caaaatgaac
     2161 tttatgtcat cgataaaacc catatctagc attctgtctg cctcgtcaag aacaacgtac
     2221 ttcacattct caagctgaat cgaaccgtgt ttcacatgat caatcaatct accaggagtt
     2281 gcaactacta tttgtactcc tcgtctcaat tgatcatgtt gaaggttaat actctgtcct
     2341 ccatatatgg acacggttct aatgccagta tattttgcaa acttgttgat ctcagttgtt
     2401 acctgcattg ctagctccct tgtaggcaca agtataagtg cttgaatggg gccattacgc
     2461 tttaccttca ttaatatcgg taaagaaaaa gcagctgtct taccagtccc agtatgcgcc
     2521 tgacctacaa catctatacc ctttaaaaga aatggtatag ctgcctcttg aataggaaat
     2581 ggcgcttcaa atttattttc tttgagtgcc ctatttattt cagcactcat tcctaactct
     2641 tgaaatgtct ttgtcaattt atgttttcac tttgaaatat ctacaaaagc cacggaagac
     2701 aagagaagta attttattta cttaacaaat ccgccgtaaa cgttttgttt gattactgta
     2761 taaattacag agatataagg catgcggaat taaatacttt atgtattgtc aaaggttact
     2821 tatatattga aaagttacca aaatacagag gagaaagtgc ttgctttcag ttaagttcag
     2881 agtcggccaa acagctaatc cttaccaaga cccagaaaga aactaattta agatagcgat
     2941 gtaagctgcc agctagtgtt aaagctcttg acattcttta caagaagaat attatttata
     3001 ccaacaatta gatttagcga tcatggagga ggatatgatt agttggtttc taaagtactt
     3061 attacaagtg gaacccaaca gaccgctttg gatgaccagg aactaaaaga agtaatcaat
     3121 gctatcatct atgctagtaa ccaatctgaa caaagcaaaa atttcgaaca ggtaaaaagg
     3181 tacaaggcat tactagctaa gttagaacca ttaagcaagt aaaagtaggt tgtgttgtat
     3241 ttctcttcta ttctttgtaa tataactcga ttatcaaaaa ctcgaagaag atcttggcgc
     3301 aggagcaaga atcctgccct cttggataaa ag
//
LOCUS       DATAAS010000089         2029 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_82196, whole genome shotgun sequence.
ACCESSION   DATAAS010000089 DATAAS010000000
VERSION     DATAAS010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2029
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_82196"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(255..785)
                     /locus_tag="VHF08_01365"
     CDS             complement(255..785)
                     /locus_tag="VHF08_01365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067331.1"
                     /translation="MSNKDEDNEVDVTFKKIEDEDEEGIEEEEEEEDGVEEQVAPETL
                     QIVEERVVSIDPSSVIQEEEGEDMNGEDEDILTDANDDDDISEQQLKEQSIQIEKLAQ
                     RVHTLQTHYDEIEDQFKSISDLQSQVKKLQVQIDDILKKAGNSKKRKTRKVKSKKASS
                     SSTTKKIGKRNKKQRR"
     gene            957..1493
                     /locus_tag="VHF08_01370"
     CDS             957..1493
                     /locus_tag="VHF08_01370"
                     /inference="COORDINATES: protein motif:HMM:NF017936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEX2067332.1"
                     /translation="MNNKKAQYLKEKLDLSELPGEGGYYKETYRSDKTIILPSETDGE
                     RSISTSIYYLLDGTQFSAFHRLKSDEIWHFYIGSSVTLYIINKIENLSEVKLGSNIEK
                     GELFQILIRAGSWFAATVNDISSYSLLGCTVSPGFDYLDFELGDRKKLIKRYPQHRSI
                     IEKLTRTQVNNLNRTSKQ"
BASE COUNT          646 a          314 c          291 g          778 t
ORIGIN      
        1 gcacgcgaaa tatgagaaat atttttcaag ctatcagaat aagttagaaa tatgcatttg
       61 ttattgaaga tttgctataa tcttattttt atttattctg ataatacatt aaccgttaga
      121 aagataataa taataataag atatcaatct atctcatact gacaagaaaa gccccataaa
      181 gaaaaggtat tgttggattg tatttttagt tgttgataaa aatataatat ctataaatat
      241 tgattatatg ttgattatct tctttgtttt ttatttcttt tacctatttt tttggtagta
      301 gatgatgatg atgccttttt actttttact tttcttgttt ttcttttttt ggaattgccg
      361 gcttttttta gtatatcatc tatctgtact tgtaatttct ttacctgaga ttgaagatca
      421 cttatgcttt taaattgatc ctcaatctca tcatagtgtg tttgtaacgt atgaactctt
      481 tgagctaact tttctatctg aattgattgt tcttttagtt gttgttctga tatgtcatca
      541 tcatcatttg catctgttag tatatcttca tcttctccat tcatatcttc tccttcttct
      601 tcttggataa cagaacttgg atctatgcta acaacacgtt cttccactat ttgtaatgtt
      661 tcgggtgcta cctgctcctc caccccatcc tcctcttcct cttcttcttc tatgccttct
      721 tcatcttcgt cttctatctt tttaaatgtg acatctacct cattgtcctc atctttattt
      781 gacatttccg ataaatacga aaaagtctct taaaacagtt gggatattga aagacatctg
      841 tcatgattta tagatatata atgcaatatt ctttcaatat tttactttaa tagaatatac
      901 acatattttc attgtatcaa tgcttaaatt cataggttta aagaatacaa tctaacttga
      961 ataataagaa agcacaatat ctgaaagaga aactagatct ttctgaactc cctggagaag
     1021 gaggatatta taaggaaact tataggtctg ataaaaccat catcttacca tccgaaactg
     1081 acggtgaacg ttcaatttca acgtcaattt actatttgct agatgggact caattttcag
     1141 catttcatag attaaaatcc gatgagatat ggcattttta cattggcagt tctgtcacct
     1201 tatatattat caataaaata gagaatctat cagaagtcaa gctagggagt aacattgaaa
     1261 aaggtgagct ttttcagatt ctgataagag ccggatcttg gttcgctgca actgtaaatg
     1321 atatatcttc atactcatta ttaggatgta ccgtatcacc aggatttgac tatttagatt
     1381 ttgaacttgg cgacagaaaa aaactgataa agaggtatcc tcagcacaga tcaatcattg
     1441 agaaacttac tagaacgcaa gtaaataatc ttaacagaac atcaaagcaa taaccttaat
     1501 agtctacaga tatttcccct taaataatag aattattaaa cactaaaata aaggattaaa
     1561 taattaaact agtatgaagc tatgggatta tgaaggacta ttattttaat ttactttttc
     1621 catcgctttg tatattagaa aaatgcttgt ttatactcta gagatgtttt tacaatattt
     1681 atttccgttg aagatatcaa tatactacta ttggatatct tcctttcttc aaaattaaca
     1741 taccaataag gataaatctt ttgctggttt gttttttaat tgaatccatg ccattttgta
     1801 taaacttatc gtttgcttgt attattttat ttattattga caatctatta tgaagaaaac
     1861 cttagtaata tttgtcatcg aaagttacaa tattgaataa gaatctcact tcagaggaag
     1921 catggaagat tgtcaatccg gtttgtagag aattgtttga attagtaaat gatggatctg
     1981 tgcagtttgt gtctgccact tatgatgaag gcattggaat atataaaat
//
LOCUS       DATAAS010000090         2083 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3324303, whole genome shotgun sequence.
ACCESSION   DATAAS010000090 DATAAS010000000
VERSION     DATAAS010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3324303"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(679..1083)
                     /locus_tag="VHF08_01375"
     CDS             complement(679..1083)
                     /locus_tag="VHF08_01375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067333.1"
                     /translation="MSEDIVSRSALIDSIIALANSFKENGFNPPVGIEVDQPTFNKLL
                     EESVELYNIDSKKAITAREFSLSGITIIKEKSQPSKEKITEQQQEELTTITKYKCPDC
                     GVIFDSIPAHRKHQQVFHDNIKEPEEINQPAI"
     gene            complement(1087..1323)
                     /locus_tag="VHF08_01380"
     CDS             complement(1087..1323)
                     /locus_tag="VHF08_01380"
                     /inference="COORDINATES: protein motif:HMM:NF018961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dodecin family protein"
                     /protein_id="HEX2067334.1"
                     /translation="MVHVAKIVEIVGSSTKGWEDAAQVAVDEAKKTIHGIRGIEITDM
                     TAKVDPNSARLKNIGLVSNSHLEWNIRKKLTEMG"
     gene            complement(1629..1784)
                     /locus_tag="VHF08_01385"
     CDS             complement(1629..1784)
                     /locus_tag="VHF08_01385"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX2067335.1"
                     /translation="MSTPLVTIEPNNPIRDAIEIIQLKKIRRLVVIDYREKMIGIITI
                     KDALKEM"
BASE COUNT          657 a          349 c          291 g          786 t
ORIGIN      
        1 ataaaatata acatatagac atatgtgata taataataat catgagagct aatttttcat
       61 aactgataac tagtacacca actatgacta tgataaagta tgagattcat accattgttg
      121 tagtaatgag gaatttatcc atatagaaat ggctacagag catagggcta tacagcatag
      181 aaaattcagt agccgccatc atcaactcac acaaagaata agtgttaagt aaaattatca
      241 aatctgtaaa agattatcaa aaattctgat atgtatcatc aatctcattc actatatagc
      301 agagcatgtc tgaaaagcag tttttcaata tattttacag taataccata tcaataaaac
      361 atacacagca tttttgtgat ccatcaataa acgatatttc ttgagtcgta atcaaagctc
      421 caactagaaa ataataaaaa atttaatgct aatcaaagat ttatgtatga agtccagcat
      481 ttgtgtagag aagactactt ttgattttac tgtgcattgt tatttcataa agtataatct
      541 atcattttat tctaaggtac tgacgaactt aaatattggt gagcaaaaat aatatactta
      601 tagtattgtg tccttctgat aaggatacaa gctttgaaag taaaatttga cacttagtga
      661 ttaagtttat ttaatttatt atattgcagg ttgatttatt tcttcaggtt ccttaatatt
      721 gtcatgaaag acctgctgat gttttctatg agcaggtata ctatcaaaaa taacgccaca
      781 gtctgggcat ttgtattttg ttattgttgt taattcttcc tgttgttgtt ctgttatctt
      841 ttctttagaa ggctggcttt tttcttttat aatagttatt cctgataatg aaaactcacg
      901 tgccgtaatt gcttttttac tatctatatt atataactct acagattctt ctagtagttt
      961 gttaaacgtt ggttgatcaa cttcaattcc tactggagga ttaaatccat tctccttaaa
     1021 agaatttgct aatgcgatta tactatcaat taaagcactt ctactaacga tgtcttctga
     1081 catatcttat cccatctctg tcaatttctt tctaatgttc cactccaaat gagagtttga
     1141 tacaagcccg atattcttca atcttgcgct attaggatct acttttgcag tcatatctgt
     1201 aatttctatt cctctgattc catgtattgt ttttttagct tcatctactg caacttgagc
     1261 agcgtcttcc caacctttag tagaactacc aactatttct actatttttg ctacatggac
     1321 catagctgcc gtttctatgt cgtgctttta atataataga tatagatgaa tgttgtagat
     1381 cctaattata gatctcaaga actagatgag aaaaatgcta cgactgaatg actgaattaa
     1441 gtcatatata taatagttac aaaattcaaa aagccaaaaa gaagttgtct atatcaaaaa
     1501 gatgcagaaa tatccctgga tctgactaca cctttttccg tttcaaggtg atcgtagcat
     1561 acactatcta tttgctgggg ctaaagctca tttgctataa ttcccaatgt atatcaacgc
     1621 tacaattttt acatttcctt taatgcatct ttaattgtta ttatgccaat cattttttct
     1681 ctatagtcga taacaacaag cctacgaatc tttttgagtt gaatgatctc tatagcatct
     1741 cttattggat tgtttggttc tatagtaact aaaggagtac tcattatctg tcgtattggt
     1801 acttgaacta cgaataattc tgataatcct atttgacgta taatatctct ctctgtgatt
     1861 atacctactg gtttattggc atcattgact gttcttttac agtaactatg cttccgatat
     1921 attttcgtac atcaatttac agactgtttt aataatttca tctgttgttg ctgttatcac
     1981 ctcacccatc atgatactag aaactagtct tgatttttta ctcatatgct tgttatgatt
     2041 gttattaaat aattaaacct cttttttaat actttgctcc gtt
//
LOCUS       DATAAS010000091         4739 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3324627, whole genome shotgun sequence.
ACCESSION   DATAAS010000091 DATAAS010000000
VERSION     DATAAS010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4739
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3324627"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(170..820)
                     /locus_tag="VHF08_01390"
     CDS             complement(170..820)
                     /locus_tag="VHF08_01390"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine hydrolase"
                     /protein_id="HEX2067336.1"
                     /translation="MEKYKINPALIVIDVQNGFVSKGGSYDLLGMSISPYQEVIPKIR
                     HLINICRSARIPIFYTQAIREPSGIDLLTKTHNILPRAREERIKKKPICVRGTWDAEI
                     VNDLKPDENNDHVIIKRRDSAFHDTEIEVWLRSIGIDTLIFCGIDTSICVESSLRDAF
                     NIGYDVILISDATISSNKKHYESTLENVKEYYGLVMSIDQFSKYLPPQPQAIMEQA"
     gene            1355..1881
                     /locus_tag="VHF08_01395"
                     /pseudo
     CDS             1355..1881
                     /locus_tag="VHF08_01395"
                     /inference="COORDINATES: protein motif:HMM:NF014025.4"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
     gene            2012..2281
                     /locus_tag="VHF08_01400"
     CDS             2012..2281
                     /locus_tag="VHF08_01400"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CorA family divalent cation transporter"
                     /protein_id="HEX2067337.1"
                     /translation="MTIESVTNNGLTWINIQKPTREKMNVIGKRYKFHELNIEDSLSK
                     IQIPKIDRYEDHFFMTLHFPIKEENHKENSSPRISQLSIFNIHWS"
     gene            2295..2978
                     /locus_tag="VHF08_01405"
     CDS             2295..2978
                     /locus_tag="VHF08_01405"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CorA family divalent cation transporter"
                     /protein_id="HEX2067338.1"
                     /translation="MHQGDLKPLVDMFQSCNSNQEKRNTIMGKSSGYLLHSIIDALVD
                     DLFHILKKVIGNIHDIEDDVFDEHLAIAKEISLLRREITILRRTILPLRRIMLLVTRF
                     VQTFSEEDLTLYYDDVNDHIDTVIEILEESKETIEIYKDTDFMLSTEKTNKILGILTI
                     LFTLSIPATVIGTFYGMNIELPGGIDTGSSHFFGPYTTFIVIILVSITSALFMVWYFR
                     KLSWIQFVK"
     gene            3344..4366
                     /locus_tag="VHF08_01410"
     CDS             3344..4366
                     /locus_tag="VHF08_01410"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CorA family divalent cation transporter"
                     /protein_id="HEX2067339.1"
                     /translation="MQNIICYNEREVREGQGSKEDIKKGFNLWIDIVDPSASDLFNIQ
                     QSFNLDNKAVETFVNKSKKFQIRILEDHTFTVFLDLKYKGITNLDTEAIYFFLGKGWL
                     ITIHSSRVDLMTTGRKMIAEKNKRILESPTDALYYSILSSIVERYEQLLAAIELKALE
                     LEKQSLYRPTRKTLENMDILSKQGIILRRYFWQARRVMNFLTNMEENKEDIKYLQMVY
                     DDINQLIELMDSYHDTINSTRELYAASMSLQLNDTMRVLTIFSTLLLPLTLLTGIFGM
                     QGFDLNNLNAIPQGFTILGVIMATIVIFLFYLFWKRQWIFVKNNIGYNDLSPDINSKD
                     QKNRQE"
BASE COUNT         1615 a          727 c          786 g         1611 t
ORIGIN      
        1 atccaattta tcatctcttt gaattgttac tacattatcc aaagttcttc agatacattc
       61 tattattatt ggtagatagt ataactggtt ttcttttttt atatttaata acaataaaat
      121 cttttgagat gctagagaac gcattaaaaa tggaactatt cgtgtattct caagcttgtt
      181 ccatgatggc ttgtggttgg ggaggaaggt atttgctgaa ttggtcaatg ctcatcacca
      241 atccataata ttcctttaca ttctctagtg ttgattcata gtgttttttg ttgcttgata
      301 tggtggcatc agaaataagg ataacgtcat atccaatgtt aaatgcatca cgcaaagaag
      361 attccacgca tatagatgta tctatgccgc aaaaaatcaa tgtatcaatt ccaatacttc
      421 ttaaccagac ctcaatttca gtatcatgaa acgctgaatc ccttcttttt attatgacat
      481 gatcgttatt ttcgtcaggt tttagatcgt ttactatctc tgcgtcccat gtccctctaa
      541 cgcatatggg ctttttcttt attctttctt ctcttgctct tggaaggata ttatgggttt
      601 ttgttaaaag atcaattcca gatggttcac gaatggcctg agtataaaat atagggattc
      661 ttgccgatct gcatatgtta atcaaatgac gaatttttgg tataacctct tgataaggag
      721 aaatgctcat acctagtaag tcgtatgatc cacctttact gacaaatccg ttctgtacat
      781 caattactat aagtgcagga ttaatcttat atttttccaa tttcatcata gtttttcaat
      841 gcaaatatct ataaacttct ataaagatga tctgacaaaa cttccaatat atataggagg
      901 agaatggtca gtttcttatt caaatagtag acaattctat ttcttttata gttattatca
      961 atgctatttg tatttcttat agattattag tctcatagtg cataggttag ctatttgtac
     1021 acgcccatat attgaggaca gtttgtaaaa aattttttct ttacagtatt ggaatactcc
     1081 attgcaatta tggtacttaa ttatgtcatc gattgctatt gtaattgcac tattgacaat
     1141 agctatagga attactacta tcatcgatga ttgtacctgc ggaaggtata atttatgatg
     1201 acgatcccta tgcaagaatt ttcttacgaa tacaggaatt tatcgatttc ttgcatagca
     1261 attctttaag tacaattgta atatctaata catttttgac gactacctaa agtatgttat
     1321 ttctttattt gttgtagtta atccaatagg caagattcca ctattcatca ctttaacaga
     1381 aaaaatggaa aaggaaacaa gaaattagtt ttgaaaaatg ttaatattac tactgcaata
     1441 ttgcttacga tttttgcagt agctggaatt cagttgcttt ctatttttgg aattagtctt
     1501 tttagtttta tgatagctgg tggagtgttg ttgtttataa tatcaattga gtttctgaca
     1561 tatggagaat ggagatatag tggttcttct atatctggag attcaggaat cgttccatta
     1621 gcatttcctt tacttgcagg acctggagct attactactg taataataat atcgctacaa
     1681 acatatgggt ggatagtatt gataatatca attgtcttta ttgtattagt aacttatctt
     1741 gtattggtcc tggaaaatcc tatattaaaa atccttggaa gaaggggatc tttaataaca
     1801 acaagagtat ttgcaatttt ccttgcagcg attgcagtcc agtatgtggt agaaggaatc
     1861 cgacaattgt ttgtgttata aagataactt ctaacggata gaacaatgct gaacttttat
     1921 aacaagatga caataaccaa gacacgtttt gcaatagaaa taatttcaag atctcagcaa
     1981 tactaatact aggataggta ttggaaaagt aatgaccata gagtctgtaa ctaataacgg
     2041 actaacctgg attaatattc aaaaacctac acgtgaaaaa atgaatgtaa ttggcaaaag
     2101 atacaagttt catgagctta atattgaaga ttcactttcc aaaatccaaa ttccaaagat
     2161 agacagatat gaagatcatt tttttatgac tttgcatttt ccaattaagg aagaaaatca
     2221 taaagaaaat agttctccaa ggataagtca actatcaata ttcaatattc actggagctg
     2281 actatctact tacgatgcat caaggagatc tcaagccgct tgtagacatg ttccagtcat
     2341 gcaatagcaa tcaagaaaaa agaaatacta taatgggaaa atcttcagga tatttgcttc
     2401 acagtataat cgatgcatta gtagacgacc tttttcatat attaaaaaag gttataggta
     2461 atattcatga tatagaagac gatgtatttg atgaacatct agcaattgca aaagagatct
     2521 cgcttttaag aagagaaata acaatactaa ggcgtactat attaccatta agaagaatta
     2581 tgttgttagt aacgcgtttt gtacaaacat tttcagaaga ggatctcacg ttatattatg
     2641 atgatgtaaa tgatcacata gatacggtta tagaaatatt agaagaatct aaagagacta
     2701 tagaaatata caaggataca gattttatgc tcagtactga aaaaaccaat aaaatacttg
     2761 gaattcttac tatacttttt acattatcaa ttccagcaac agtgattggt actttttatg
     2821 gaatgaacat agaattacct gggggaatag atactggttc ttcgcatttc tttggaccct
     2881 atacaacatt tattgtcatt atactcgttt caataacctc tgcattgttt atggtatggt
     2941 attttcgtaa acttagttgg attcaatttg ttaaatagtc aatattatat tatgcaagct
     3001 tatccgatat aatattctca tcttcataat aattgtctta atagttgtgc aatatattga
     3061 attgcttgaa ttgcgacagc tgcgataaat attgcgaaaa ctttgtgcct atcatcaata
     3121 ctactctttc aagaaaatca agaaaataag atttgaacac attgctgtaa tattgattcg
     3181 ccatgacgta gtcagatatt gttaatattg cagtactgac atcttcaaat cttcaaactg
     3241 gacttttctt gcagctatct gtaatcacgg tgtatgcgaa tatggtagat tttcctttgc
     3301 aatgtttata gcccatattg ttccttaaat ctcaaatcaa ataatgcaaa atattatttg
     3361 ctataacgag cgagaagtta gagaaggcca aggttcaaaa gaagacatca aaaaaggatt
     3421 caacctatgg atcgatattg ttgatccgtc tgcgtcggac ctttttaata tccaacaatc
     3481 ttttaattta gataacaaag cagttgagac atttgtaaac aagtcaaaga aattccagat
     3541 taggatatta gaagatcata cttttactgt ttttcttgat cttaaatata agggcataac
     3601 gaatcttgat acagaagcaa tatacttttt ccttggtaaa ggctggttaa ttacaattca
     3661 ttcctctaga gtagatctca tgacaacagg acggaagatg attgcagaaa agaataagag
     3721 aatactagaa tctccaacgg atgctctata ctatagtata ttatctagca tagtagaaag
     3781 atatgagcag ctcttagcag ccatagaact caaagcacta gaattggaga aacagtctct
     3841 ataccgacca acaagaaaga cacttgaaaa catggatatt ttatcaaagc aaggtatcat
     3901 tttaagaaga tatttctggc aggctcgacg cgttatgaat tttctaacta atatggaaga
     3961 gaataaagaa gacataaagt atttgcaaat ggtgtatgat gatattaatc agctaattga
     4021 gctaatggat tcctatcatg atacgataaa ttcaactcgc gaattatatg ctgcaagtat
     4081 gtcattacag ctaaatgata caatgagagt cctaacaata ttttcgacat tattgctgcc
     4141 acttacttta cttacaggta tatttggaat gcaaggattt gacttgaata atcttaatgc
     4201 cataccgcaa ggctttacaa tactaggtgt tataatggca actattgtaa tatttttatt
     4261 ctatctattt tggaaaagac agtggatatt tgtgaagaac aacattggtt ataatgacct
     4321 atctcctgat atcaacagta aggatcaaaa aaacaggcaa gagtagcttg atagttatag
     4381 cgtatttgaa taaggctagc atataatata tatagtttcc agcctgccca tcttgagatg
     4441 cttgtgctgt tagttgatat gaggttattc aagatatacg aaagaggcag agcaatatac
     4501 ctatccatta gttagttaga atacgcaata atgcgcattg ttcataattt gtaaaaagta
     4561 actttacaat cctatcaatc aacgcaaaaa ctacaatgac aaaaaataaa gtagttgatc
     4621 tattctactg tggcaaaggc attgggtcta ccaacttacc aactactgta tatgcaacag
     4681 taaacattct gatattattt ttaagataaa aacatttgtt taaattaatc ggcagtgtt
//
LOCUS       DATAAS010000092         1958 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_85439, whole genome shotgun sequence.
ACCESSION   DATAAS010000092 DATAAS010000000
VERSION     DATAAS010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1958)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1958)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1958
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_85439"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            516..1643
                     /locus_tag="VHF08_01415"
     CDS             516..1643
                     /locus_tag="VHF08_01415"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2067340.1"
                     /translation="MGRFLGRKSTRYSPTPSENNTQQTDYNEDLEFRKRDLYKKGINH
                     MANEKLEDAIRSFELALRIDQNYVDAWIKKGYAHFHMNEYNAAISSYDKALEIDLNNA
                     EAWNLKGLSYYRMKNYDKAIAACEKAIDINPNDGMAWYNEACYLTVSGRVDEGLEALK
                     RSIEIDISNAKKAVRDRDFENARAEEGFRRIIEVVVLESIRQGYDYVGKIVWITAMDK
                     EDVEDAITRLSMKGLIIKKEKRSLTSREEYYELANEIAYKVGTAKRSGLLGKSKEISA
                     PVQQLKDIIEIIGRAKDSVEKGDVNSTIQDFDSLINPMKHGSAMIEQFFDEHRDLRLF
                     QIRLKDKGQDYLNSHRSDLIKLLNDIDSKIRNNQVTKPIKD"
BASE COUNT          716 a          279 c          381 g          582 t
ORIGIN      
        1 cccttcctgt agaaaaacac agctaaggct gattcatagt tttttttaga aaacataatt
       61 tattgcaagg caattactgt aatcttttat tagataatgc ttatggaaaa cacttgttta
      121 tagtagtgtt gggagaatta gtatcctaaa agatttaaat tctcaaaact agagcatcat
      181 cttccttcta catatatgaa aaagcatctc gggagagaga actatcctgt tcttatggat
      241 tatgatcgag gattttatta tcattttcat ttacaaatag aagtgtaaat taaaacatat
      301 tagaagttgt tcaatctgtt ggattagtat tacaataaag agatggtaac aatcttagtc
      361 aagtaagcaa aaaagacatt tacagacgga ccgatggagc tacttttgtc tccagggttt
      421 gccaatgcat agcataaata aacataatgg attgatatat agtaattgtt atagtagtcc
      481 aaatgtattt atctgcgatt tgagcaattt attcaatggg cagatttcta ggaaggaaaa
      541 gcacgagata ttcccctact ccttccgaaa ataatactca acaaactgat tataacgaag
      601 atcttgagtt tcgaaaacgt gatttataca agaaagggat aaatcatatg gcaaatgaaa
      661 aattagaaga tgccattcgc agttttgaac ttgcactaag aatagatcaa aactatgtcg
      721 atgcatggat caaaaaaggc tatgctcatt ttcacatgaa tgaatataat gctgctattt
      781 cctcgtatga taaggcacta gagatcgacc ttaataatgc ggaagcttgg aatttgaaag
      841 gtttatcgta ttatcgaatg aaaaattatg ataaggcaat agcggcatgt gaaaaagcaa
      901 ttgatattaa ccctaatgat gggatggctt ggtataatga agcatgctat ctaactgtga
      961 gtggtagggt ggatgaaggg ctggaagcgt tgaagcgttc catagaaata gatatttcca
     1021 atgccaaaaa ggcggtccgt gatagggact ttgaaaatgc tagagccgag gagggattcc
     1081 ggcgaattat tgaggttgtg gtattagaat ctatcagaca aggctatgat tatgtaggaa
     1141 agattgtatg gattaccgca atggataagg aagatgtcga agatgccata actcgattat
     1201 ctatgaaagg attgatcatt aaaaaagaaa aaaggtcact gacaagcagg gaagaatatt
     1261 acgaacttgc gaatgaaata gcctataaag tcggtacagc aaaacgttca ggtcttcttg
     1321 gaaaaagcaa agaaatttct gctccagtgc agcaattgaa agacatcatt gaaatcattg
     1381 gcagagccaa agactctgta gaaaagggag atgtcaattc aaccatccag gattttgatt
     1441 ctcttatcaa tcctatgaaa catgggagtg ccatgataga acaattcttt gacgagcata
     1501 gggatcttag actatttcag ataaggttaa aagacaaggg gcaagactat cttaactccc
     1561 atagatctga cttgataaaa ttacttaatg acattgattc taaaatccga aacaatcagg
     1621 taacgaagcc cataaaagat tgaagattga acactcatta agatctgatt atcgatataa
     1681 gatgttgctc aaattgttcg cgatgtaaaa gatattatgt tctaataaat tagtgtttct
     1741 cgttctttca taatccttat atatattctt aataaaatga aagataataa gttatttaca
     1801 attaaataag cagaataatt ctaaacacta cctcttctgt attaaacaat gatagcatca
     1861 attgaggaag tgtatgggat agagcacaaa tattcaatta gtatatttat cataaagtat
     1921 tttttagcag agaatgtatt aatacctagt agtaaaag
//
LOCUS       DATAAS010000093         4764 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_88782, whole genome shotgun sequence.
ACCESSION   DATAAS010000093 DATAAS010000000
VERSION     DATAAS010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4764)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4764)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4764
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88782"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            261..1661
                     /gene="sufB"
                     /locus_tag="VHF08_01420"
     CDS             261..1661
                     /gene="sufB"
                     /locus_tag="VHF08_01420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEX2067341.1"
                     /translation="MTTEELNMDYSKYDFKDSTELYVFLSKKGLSRGTVEEISKMKGE
                     PDWMRDFRLRSYDVFMSKPMPNWGGDISKIDFQNIYYYAKASEKQSKSWDDVPESVRN
                     TFDKLGIPEAEKKFLAGVGAQYESEVVYHNLREDLQKQGVIFVDTDTAVKEYPEIMKK
                     HFGKVIPPEDNKFAALNSAVWSGGSFIYVPPNVKVELPLQAYFRINAENIGQFERTLI
                     IADENAEVHYIEGCTAPVYTTESLHSAVVELIAKKGAKIRYTTIQNWSKDVYNLVTKR
                     AYAYENATVEWIDGNIGSRLTMKYPGVYMLGKNAHAEVVSIAFAGARQHQDAGAKAVH
                     LAPNTTSRITSKSVSKDTGRTTYRGLLHVAKGATGVKSNVRCDALLLDENSRTDTYPY
                     VEVNEDDATISHEASVGKIGEDQIFYLMSRGFSESDALSLIVGGFMEPFTKELPMEYA
                     VELNRLVKLEMEGSVG"
     gene            1706..3127
                     /gene="sufD"
                     /locus_tag="VHF08_01425"
     CDS             1706..3127
                     /gene="sufD"
                     /locus_tag="VHF08_01425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HEX2067342.1"
                     /translation="MVILSTINSQHINTITTENREPDWMIHMREKALSNYESLPLEVS
                     PLYSKYSDANRLKPEHIHLPDRTIKSEPYKDLVDRLDELEHGTGILQIGSSINRLFIP
                     DKIAKQGVIIADLKKAISQHEDLIKETLSANQLDYTEDKFLALEAAAFQSGIFIYIPK
                     NVIIEEPIRIVNSLADNGISSIARNIVVADISSKATVVQEIYAPPNAINNDNIQQGYF
                     ELVECHVHPNARLEMVTLQAMSGDTINFSNRKAFIDRDAKMSWYLGMFGTQLSRYKID
                     SVMKGPGSSGEDVEIIFGIGNQSFDVTSNLIHIGQNSRGRVLVKSVMKDTSKSLFKGM
                     IKIEKNAKAAESYLAGHAILLDKGAKSDAIPGLEIQTNEVKATHSASVAQLDESQLFY
                     LMCRGLSKDGAKREIVNGFLEPLSRKMGPTIRAWINYLIENKWSGKSLMLKTDEAMEQ
                     ILEIEKSRYRETQDLFEKHYKYR"
     gene            3147..3461
                     /locus_tag="VHF08_01430"
     CDS             3147..3461
                     /locus_tag="VHF08_01430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron oxygenase ferredoxin subunit"
                     /protein_id="HEX2067343.1"
                     /translation="MSEWIKVGEVDSIKNGDLIDFDYKDKKILIARSGDKFFATDRIC
                     THAYADLSTGFMNVEEKTVTCPLHMSIFKLEDGVPQNLPAEEPLKTYPVKIEQSGIYI
                     FV"
     gene            3597..3998
                     /locus_tag="VHF08_01435"
     CDS             3597..3998
                     /locus_tag="VHF08_01435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067344.1"
                     /translation="MDTHGTSQKDIQKSRERCRKIIELSPKIRYVGVINKFGRTLAGQ
                     IRNGVTPLLQPDEVRNECFIEATRFHLRKNFESSIGKTEFTLTINEKVGTLTLANQSN
                     FYYITIEKDTRDTDVEKIIKSVKTLLNNLND"
     gene            complement(4095..4541)
                     /locus_tag="VHF08_01440"
     CDS             complement(4095..4541)
                     /locus_tag="VHF08_01440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15e"
                     /protein_id="HEX2067345.1"
                     /translation="MADTWTNMWKLNSQELRSKAVLWREEPAIIKIQRPSRLDRARRL
                     GYKAKQGIIVVRARLGRGGMRKQRPIAGRRPKHIGVVHIKQGISMRKVAERRVNERFP
                     NLEVLGSYYLHKDGMYLWYEIVLADPNHPSISKDREMRGKLKAFAK"
BASE COUNT         1669 a          782 c          925 g         1388 t
ORIGIN      
        1 agaggtaaag gcagtaatag cgataggccc attcacccag gagaaattaa gaaaaaaggg
       61 tatccactca tatgagtcta aaatacactc gattagaggt acttttgagt tggctaaaca
      121 tattcttaat gaaggttagc atattatgct ctttttagtc attatatgga cttggtattt
      181 gctaattgct tttgcgctag gcgtacagtg agagagagag agatatatat atataaaaca
      241 taacagcgtt atatatctat atgactacag aagaactgaa tatggactat agtaagtatg
      301 attttaagga ctctacagaa ctttatgtat ttctaagtaa aaaaggtctc tcacggggca
      361 ctgttgaaga gattagcaaa atgaaaggcg agcctgattg gatgagagat tttaggttga
      421 gatcatatga tgtttttatg agcaagccaa tgccaaattg gggtggagat atttcaaaaa
      481 ttgattttca gaatatatat tattatgcca aagcatctga aaaacaaagt aaaagctggg
      541 atgatgttcc agagtctgta agaaatacct ttgataagct tggaatccca gaggcagaaa
      601 agaagttcct agcaggtgta ggcgctcagt acgagtcaga agtagtatat cataatctaa
      661 gagaagatct tcagaaacaa ggtgtaattt ttgtcgatac agatactgca gttaaagaat
      721 atccagaaat aatgaaaaaa cactttggaa aggtcattcc accagaagat aataaatttg
      781 cagcattaaa tagtgcggtt tggtcagggg gatccttcat ttacgttcca ccaaatgtaa
      841 aagttgaact tcctctacag gcatacttta gaatcaatgc agaaaacatt ggccagttcg
      901 aaagaactct gattattgcc gacgagaatg cagaagttca ttacattgaa ggatgtaccg
      961 caccagttta tacgactgaa tcattacact ctgcggttgt agaattaatt gcgaagaagg
     1021 gtgccaagat tagatacact accatccaga actggagtaa ggatgtatac aacctcgtaa
     1081 ctaagagagc atatgcatat gagaacgcca cagttgaatg gattgatgga aatataggta
     1141 gcagactaac catgaaatat cctggtgtct atatgttagg aaagaatgct catgctgaag
     1201 tggtatcaat agcttttgca ggcgcccgtc aacatcaaga tgcaggtgca aaagcagtac
     1261 atctagcacc aaacacaacc tccagaatta caagcaagtc agttagcaaa gatactggta
     1321 gaacaacata taggggacta ttgcacgttg caaaaggtgc tacaggtgta aaatctaacg
     1381 tcagatgcga tgcattgctg ttagacgaaa attcaagaac tgatacatat ccctatgtag
     1441 aagtaaatga agatgatgca acaatatcac atgaagcaag tgtaggaaag attggagaag
     1501 atcaaatctt ttatcttatg agtagaggat tttcagagtc tgatgcacta tcactgatcg
     1561 ttggtggatt catggagcca tttacaaaag aattaccaat ggaatatgcg gtagaactga
     1621 atagacttgt aaagcttgaa atggaaggct cagtaggtta agagtatata cactctcttt
     1681 tttattaaag gaatgatata gctggttggt tattttatct actattaaca gtcagcatat
     1741 taatacaata acaacagaaa acagagagcc agattggatg atacacatga gagaaaaagc
     1801 attatccaat tatgagtcac tgccacttga agtttcaccc ctttacagta aatactctga
     1861 tgccaaccgt ttgaagccag aacacatcca tctgccagac agaactataa agtcagagcc
     1921 atacaaagat cttgtagaca gactcgatga attagaacat gggacaggta tattacaaat
     1981 tggctcttca ataaatcgat tatttattcc tgataaaatt gcaaaacaag gagttattat
     2041 tgccgattta aaaaaagcga tatcacaaca tgaagatctt ataaaggaaa cactatctgc
     2101 taatcagttg gattatactg aagacaaatt ccttgcatta gaagctgcgg cttttcaatc
     2161 cggtattttt atttatattc caaaaaatgt aattatagaa gaaccaataa ggattgtaaa
     2221 ttcacttgca gacaatggga tctcttcaat agcacgtaat attgttgtcg cagatattag
     2281 ctctaaagct acagtagttc aggagattta tgcgccaccc aatgcgataa ataatgataa
     2341 tattcaacaa ggttatttcg aattagttga atgtcatgta caccctaatg ctcgtcttga
     2401 aatggtaaca ttgcaagcga tgagtggaga taccataaat ttctcaaata ggaaggcttt
     2461 catcgataga gatgctaaaa tgtcctggta tttaggaatg tttggtacac agctatcaag
     2521 atataaaatt gacagcgtaa tgaaaggtcc gggatcgtct ggagaagacg tcgaaatcat
     2581 cttcggtatc ggaaatcaat cattcgatgt cacatctaat ttgattcaca taggtcaaaa
     2641 ctcaagaggt agagtacttg tcaagtctgt tatgaaggat acttccaaat cgttgtttaa
     2701 aggcatgata aaaatagaaa agaatgctaa agctgccgag tcttaccttg ctggtcatgc
     2761 aattctgcta gacaaaggtg ctaaatcaga tgccattcca ggactcgaga tccaaactaa
     2821 tgaggtaaaa gcaacccatt ctgcatcagt agcacagctt gatgaatccc agctttttta
     2881 tttaatgtgt agaggattaa gtaaggatgg agcaaaaaga gaaattgtta acggtttttt
     2941 ggagccatta tcaagaaaaa tgggaccaac tattagagca tggatcaatt atctaattga
     3001 aaacaaatgg tctggcaaat ctcttatgct caagacagac gaggcaatgg aacagatctt
     3061 ggaaatagag aagtcgcgct atagagaaac tcaggacctt ttcgagaaac actacaaata
     3121 tagataaaag aatagaatat caaagtatgt cagaatggat taaagtaggc gaggtagatt
     3181 caataaaaaa tggagattta atagattttg attataaaga taagaagata cttatagcca
     3241 gatcaggaga taaatttttt gctacagata ggatatgcac tcatgcatac gccgatttat
     3301 ctaccggatt tatgaacgta gaggaaaaaa cggtcacatg tcctttgcat atgtctatct
     3361 tcaaattaga agatggtgtt ccgcagaatc ttccagcaga agaaccattg aaaacgtacc
     3421 cagtcaagat agaacagagc gggatctata tttttgtata ataattcgtt atattagtat
     3481 aacaacaatt tatgatttta cgttttgaat gaaccagtta tgccatttga gaaaatgctt
     3541 ttcccaaatt ttactttact tatcagaata tatatttatg gcaacaagta caatgtatgg
     3601 atacccacgg aacatctcag aaagacattc aaaaaagtag agagagatgt cgtaagatta
     3661 ttgaattatc gccaaagata cgttatgttg gagtaattaa taaattcggc aggactcttg
     3721 ccggacagat acgtaatgga gtaacaccgt tactgcagcc cgatgaagtc agaaatgaat
     3781 gttttataga ggcgacaaga ttccacttaa gaaaaaactt tgaatcttcc attggaaaaa
     3841 ctgagtttac tttaaccatt aatgaaaaag tcggaactct cacgttagcg aatcaaagta
     3901 atttttatta tatcacaata gagaaagaca ccagagatac ggatgtcgaa aaaatcataa
     3961 aatctgtaaa gactttatta aataatctta atgattaaat tgtcgtcgta agagttaata
     4021 cgtaaatata tacacattat gtgattcttc tagaatactg gttatacata tccagaatca
     4081 gcggggagta tttcttattt tgcgaaagcc ttgagtttgc cccgcatttc cctatctttg
     4141 gaaatagatg gatgatttgg atctgcaagc actatttcat accagagata cattccgtcc
     4201 ttatgcaaat aataagaacc taatacctcc aagtttggga atctttcgtt tactcttctt
     4261 tctgcaactt ttcgcatact tattccttgt ttaatatgaa ctacaccaat atgtttagga
     4321 cgcctacctg ctataggtct ctgctttctc ataccccctc tgcctaatct tgcacgaact
     4381 acaatgatac cttgtttggc tttgtatcct aatcggcgtg cacgatcaag tctgctcggt
     4441 ctttgaattt taataatggc tggttcttct ctccacagaa cagctttgga ccttagttct
     4501 tgactattta acttccacat atttgtccaa gtatcagcca tgtaactacg catatgaaat
     4561 ggctatagaa atacccttaa tatttgtata tagaaattct aataccataa ttagtatgat
     4621 gcatctatca gtagaacaga agcaatttga gatttaaata ataattatca catatgcttt
     4681 tctataatta gtagctggat atgcgttttc gcttttttat tttgacttct tagaatgaag
     4741 aattgtgtta gagtatatta aaac
//
LOCUS       DATAAS010000094         4003 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_88918, whole genome shotgun sequence.
ACCESSION   DATAAS010000094 DATAAS010000000
VERSION     DATAAS010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4003
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_88918"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..554)
                     /locus_tag="VHF08_01445"
     CDS             complement(<1..554)
                     /locus_tag="VHF08_01445"
                     /inference="COORDINATES: protein motif:HMM:NF024867.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC family ATPase"
                     /protein_id="HEX2067346.1"
                     /translation="MIKDIKLHNFISHRDTSLLLEKGITIFVGHNGSGKSSIIDAITF
                     ALFGEHTRKSNKNLILRGASSSYVRLIFYVNSREYSAYRQLGSLGQSISAKLNLLSDS
                     NNIINKPIVAGERKQFGESMSAEVAKTLGLDYKKLKVATIIQQGELNRIIEFHPKDFK
                     ELLNGMIGIDRLDLAYQTMHETIDG"
     gene            complement(556..1731)
                     /locus_tag="VHF08_01450"
     CDS             complement(556..1731)
                     /locus_tag="VHF08_01450"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair exonuclease"
                     /protein_id="HEX2067347.1"
                     /translation="MLISHISDIHLGYSQFNLQEREEDIYEVFEEVIDKSISEHADIV
                     ILAGDIFHTPRPSGSSIIKLANELKKLKEKSIPVFFILGEHDINRLQDVPVPYVFHNL
                     RLATRLKENQPLQYGNITIFGFDKERKSNIQNLLEQFKITQELAKRQKKDVGIPNNKN
                     ILVLHQGLTDFNKFAGELNSADLPKAFDYYAMGHYHDHIEKKFDFLDGLISYPGSLDL
                     TPSEGIKEVNKGFCLTDTSGQEIRTNWIKLEKRRPQFSVKVNYKSLEADLEDIIKKTR
                     NYEKKPIISLKIAGKEIDSKTIASQLVKLNYSCLHYIWQPLEEYTTTPLTYDEKPFDI
                     DNELQKLAAEALKSEYLASLAIKEILPLAGRGDSKATLDLLWKIYNDIKVHGGELKV"
     gene            complement(2282..3532)
                     /locus_tag="VHF08_01455"
     CDS             complement(2282..3532)
                     /locus_tag="VHF08_01455"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2067348.1"
                     /translation="MSLGDSKDPKYKEPFTSSSISSNSSHDNVFPSFPVSSRNISDKE
                     EISFSSKSENYCVSFVDIVNSTNITAQISQTEKIGKYYSIFLNTMATLARNYGAKITK
                     NAGDSLIYYFPKTSDITNKAAFKDVIECGLTMISAGTVLNTKMNEEGLPSVDYRISAD
                     YGRVGIVRSAISQNDDLFGPTVNICSKINSKALPNQMVIGGDLYQIIKSSSYPHRPDY
                     RFKSVGEYSVGFKQMYPVYSVLTKNRTQTLSSHDEQMIKLNPVQRHPSPPTAPTTTTT
                     LKRPSKTDSNYKDQEKHAPNIMLVDDDPDILLTYKSILIEENCNIETFTDAQEALNHF
                     AKANHSFYDLVLLDIRMPDINGLQLYYKLKAINMAIKIIFVSALDAADELISMLPGVR
                     VDYDIIRKPVNRENFVNKIKAVVS"
BASE COUNT         1205 a          657 c          680 g         1461 t
ORIGIN      
        1 ccatcaattg tctcatgcat agtttgataa gcaagatcca atctatcgat accaatcatt
       61 ccattgagga gctctttgaa atctttagga tgaaactcta ttattctatt gagttctcct
      121 tgttggataa tagttgctac tttcaatttc ttatagtcta acccaagagt ctttgcaact
      181 tctgcactca tggactctcc aaattgtttt ctttctccgg ctacaatggg tttatttata
      241 atattgtttg agtctgatag aagatttaat tttgctgata tcgattggcc taaagatcct
      301 aactgcctgt aggcactata ttctcttgaa ttaacataaa agattagacg aacataggac
      361 gaggaagcac ctctgagtat aagattctta ttggattttc ttgtatgctc tccgaacaaa
      421 gcaaaagtta ttgcatctat tatactcgat ttacctgagc cgttatgtcc tacaaaaatc
      481 gtgattccct tctctaacaa taaagaggta tcccgatgtg atatgaaatt atgtagctta
      541 atgtctttta tcatattata cttttaattc tcccccatgt acttttatgt cattgtatat
      601 tttccaaagc agatctaatg tcgctttcga atctcctcgg cctgccaaag gcaatatttc
      661 ttttatagca agtgaagcta aatattctga ctttaaagcc tctgctgcta gcttttgtaa
      721 ttcattgtcg atatcaaaag gtttctcatc ataagttaga ggtgtagttg tgtattcttc
      781 taatggttgc catatataat gtaaacagga ataatttagt tttactaatt gcgatgctat
      841 ggtttttgaa tcaatttctt ttcctgctat ttttagtgat attataggct tcttttcata
      901 atttcttgtt ttctttataa tatcctccaa atctgcttcg agtgatttat aattgacttt
      961 tactgaaaat tgtggcctcc ttttctctaa ctttatccaa ttagttctta tttcttgtcc
     1021 agaagtgtct gtaaggcaaa atcctttgtt aacttcttta attccttcac ttggagttaa
     1081 atctagcgaa cctggatacg atattaatcc atcaagaaaa tcaaatttct tttcgatatg
     1141 atcgtggtaa tggcccattg catagtagtc gaatgccttt ggaagatcag cagagttgag
     1201 ttcaccagca aatttgttaa aatccgtaag gccttgatga agtacaagta tatttttgtt
     1261 attcggaatt ccgacatctt ttttttgccg ctttgccagc tcctgtgtaa ttttgaattg
     1321 ttctaagaga ttttgaatat tgctttttct ttccttatca aaaccaaaga tagttatgtt
     1381 tccatactgt agcggttgat tctccttcag cctagttgct aatcggaggt tatgaaaaac
     1441 gtatggtaca ggaacatctt gtagtctatt aatatcgtgc tctcctaaga taaaaaatac
     1501 aggaatagac ttttctttta gtttcttgag ctcatttgcc agctttatta ttgaagaacc
     1561 gcttggtcgt ggagtatgaa aaatatcgcc tgctaatatg acgatatctg catgttctga
     1621 tatagatttg tcaattacct cctcaaaaac ttcatagatg tcttcttctc tttcctgcaa
     1681 attgaattgt gaatatccta gatgaatatc tgaaatatgg gaaattagca aagcaaatac
     1741 tagaaggaat taaatgatgc ataatattat atctgttttg aaatttgtct tttttttatt
     1801 tattaattat aatgcatgca tagaaatgtt tctctttggc tgtagcagaa agttaatctt
     1861 tagtaaatga tcaatatcgt aaaaatgata taaagaagct gtatattcat gttatgacta
     1921 tatttttgtt ttaaaaatat tgtgttttga ttgaatgcct tctgatgaag cagagacaag
     1981 tcttttagca ataaatttta tgaactgctt tgaaagagta acaaattagt tatgacaatc
     2041 ttgagaatta gctagcagag atatcttccc gataaaaatt cgggaaagta aaagaaattc
     2101 tgtccagata agatatatgc atatatgtct acttcgcatt aagaactaga gaaattgtag
     2161 acaattgcta ctatatcgag attattaaat aagtatacag agatataaag tcgacgtcaa
     2221 aatgtttcat gtgtaaagtc aaatcgtaca ctacttttgc ttctaatcta atttaaagag
     2281 cctaggagac tactgccttt attttgttaa caaaattttc gcgatttact ggttttctga
     2341 taatgtcata gtccactctt acacccggta gcatgcttat caattcgtcg gctgcgtcaa
     2401 gtgcagagac aaatattatc tttatagcca tattgattgc ttttagtttg taatatagtt
     2461 gaaggccatt tatatcaggc attctaatat ctaataatac tagatcatag aaagaatgat
     2521 ttgcttttgc aaaatgattt aatgcctcct gagcatctgt aaatgtttct atattgcagt
     2581 tctcctcaat taatatagat ttgtatgtta aaagaatgtc tggatcgtca tctacaagca
     2641 tgatattagg agcatgtttt tcctgatctt tataatttga gtctgtctta gatggtctct
     2701 ttaaagtagt agtagtagta ggagcagtag gaggagaagg atgcctttgg acagggttta
     2761 attttatcat ttgttcatca tgcgaggata gggtttgagt tctattcttt gttaatacag
     2821 aataaactgg atacatttgt ttaaaaccaa cagagtattc gcccactgac ttgaaacgat
     2881 agtcaggacg atgaggataa gaagaagact ttataatttg atatagatct cctccgatga
     2941 ccatctggtt tggcaatgct ttagagttta ttttggaaca tatgtttaca gtaggaccaa
     3001 ataaatcatc attttgcgaa atggctgatc tgacaatccc cactctgcca tagtcagcac
     3061 taattctata atcaacagaa ggcaatcctt cttcgttcat ttttgtgttg agcactgttc
     3121 ctgctgatat cattgtaaga ccgcattcta taacatcttt gaaagcagcc ttgttagtta
     3181 tatctgatgt ttttggaaaa tagtatatta gactatcgcc agcatttttg gttatctttg
     3241 ctccatagtt tctcgctaaa gttgccattg tgttgagaaa tattgaataa tattttccaa
     3301 ttttttctgt ttgagaaatt tgtgctgtaa tatttgtaga atttactata tcaacaaacg
     3361 atacacaata gttttcggac ttgctagaga atgatatctc ttctttgtct gatatatttc
     3421 tagaggaaac aggaaaagac ggaaaaacat tgtcatgaga tgaattacta ctaattgagg
     3481 aactagtaaa tggttcctta tatttagggt ctttactgtc tcctaagctc atactctatc
     3541 aatctatttc tatctctatg tattcttaag attttctttc gttctggaaa ctgatacatc
     3601 aacccatgtt catctccgtt aatctgcaca agccaagtcc agagacttat tgtgcattta
     3661 ttaaggaata tcagctggta tactagcgtc atcagttgca gttatgacga ccaagtggga
     3721 tttggatatg agtcggatgt gattgcaagt gccagtccag ccgcctatta cttcaaactg
     3781 atgcgagata agagtgataa cagagatatt acatcacaca cgtattatca ataattgcag
     3841 caacaataca cattctaagg agacgtcata ataatagtgg ttttaatact ccagtatcga
     3901 aaacatattt aatcgctttt tttgatgggt tgaaatcaca atacttgata ctttgatgta
     3961 tactatataa gctgcgcatt cttagaatta aaggtctaaa att
//
LOCUS       DATAAS010000095         5290 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4951984, whole genome shotgun sequence.
ACCESSION   DATAAS010000095 DATAAS010000000
VERSION     DATAAS010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5290)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5290)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5290
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4951984"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(293..3367)
                     /gene="leuS"
                     /locus_tag="VHF08_01460"
     CDS             complement(293..3367)
                     /gene="leuS"
                     /locus_tag="VHF08_01460"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEX2067349.1"
                     /translation="MINTNNRYKNKNNNNNNDNIDWSLIEKKWRHRWDEQQIFNSDPD
                     FSKKKYFITVAYPYPNSPQHIGHGRTYTLADAHARYMRMKGYNVLFPMGFHYTGTPIL
                     GMSRRIASGDKELFETFQYIYHISEDVIKSFVEPIKIASYFHNEIKLGMKEMGYSIDW
                     RREFTTIDKLYSKFISWQFNTLRKKGLIVQGSHPVGWCPKDQNPVSQHDTIGDVEPDF
                     NEYLLIKFKLDDGYIIPTATLRPETIYGVTNLWVNPNVEYVRIQIDNERWIVSKEAAR
                     KLEFLNHKVAIQSSIYGKQIAGKYVEDPIRKVSIPLYPASFVESDNGTGIVMSVPGHA
                     PYDFQAIEDLKKNILLHNEFVGLKIDVMPITIIGSDDNKDVDGNDSILIPPAAKIISK
                     FKVKDQEDPQLEKATNELYSHEYYKGKMLQNTGKYVGMPVSVAKDMIKNEIVSNGIAE
                     IMFELINKPVRCRCGTECVVKILNDQWFINYGDKKWKKLAHECINKMDIVPEEIRQEF
                     NYVIDWLRERACARKSGLGTKLPLDQDWIIESLSDSVIYMSYYILAKYVNHPNNNNSS
                     SDESSKLIINMNNVDALNDSFFDYIFLGDGDVRQIAAECNVSISLIESIRNEFSYFYP
                     LDARHSGRDLVQNHLSFFIFNHVAIFTRENWPRKIVVNGSVLMEGKKMSKSLGNIIPL
                     RAAIKEHSADVIRLAMLSSAELLQDADFSFEAIKGIRSKLDDIYDMAREHSMVKSKLG
                     SSLFSSIILSEANTGIEDRWLLSRLQNHITDITVSMDKLRVRKALHDILYLLDQDLQW
                     YRKRITAKNRDDSLIALTLATFLDNRIRMLAPFAPFISEEVWEVIGGKNDSIIFAGWP
                     IVDEDKKDPIAEESEQLIINLISDLQNILRVTKISPTKIIIYTSAQWKQEIYQKILEY
                     ILLENKTNFGDIMKQLVKDPETAKARNDPKLIRNMIEDILSDPIEARNRRLKLTVFDE
                     IFPLNDAKKLLSIESGNSQAEIIVHSEDEIQKYDPREKSKYSRPFKPAIYIE"
     gene            complement(3377..>5290)
                     /locus_tag="VHF08_01465"
     CDS             complement(3377..>5290)
                     /locus_tag="VHF08_01465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004813 - alanine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006419 - alanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase-related protein"
                     /protein_id="HEX2067350.1"
                     /translation="VSASEDLAFLSRYFEAASSKVEHMGRDIKQLKSSIAKELEISEE
                     QLVKIITPYEAIYTIADHSRTLLFAISDGALPSNVGGGYNLRVILRRALSILDRIGWN
                     IKLEDVADLHINYLKQMYPELEDYREDVRTILQIESSRYIGSRERMDSIAASIKNNKK
                     KIKVEDLIRMYESDGVTPDFLMESGAIESIPSTFYTKLAELHTIQASAQTQQPIYGLE
                     NLAPTRLLYYEDESIRKFTAKVLKIIDNKYVILDQTAFYPRGGGQEPDNGEIDDVNVI
                     EVIKQSDFVIHKLKNAREKDIVEGKTVYATINGRRRDLITKHHTATHILNTSSRTNLG
                     SWVWQNSAFKDEGYARLDITHHSALNREEIERIEKTANNVIRQNLPVKIKIYDRGDAE
                     QQYSFRIYQGGAVPTNNIRIVNIEGWDIEACGGTHIGRTGEIGLIKIIKAERIQDGIV
                     RLEFVAGEAALNHIQKQENQLTVIAQSLGSSREKVVETFHKGVQESEETNKKIKIIMR
                     KIAPLIAKSISAEASQLAPHGIKLYNVYDEELDDEYYIAIGEKSIEIDPSLIYIALIS
                     KGQGIRVIVFVGEKARGKNIKAGLIAKQLSSKLGGSGGGDERFGQGGGKFKSKIQEAL
                     LSAEESVMKTISG"
BASE COUNT         1519 a         1023 c          830 g         1918 t
ORIGIN      
        1 acatctgttt tatatgttat agtttggata tagcatattt ttgtaagaga taaaattgca
       61 ataaaggtaa agatgtaata atacgccagg agcatgtttt tcatatcaaa gacagaaacc
      121 gcagcatgat ttgcaacttg aatattgaaa aaaccataat ttgcttatct tggagatata
      181 agaattactc gtatcattaa tcctattaat tattctaaca tttctaaacc cgtcaacatt
      241 gtttgcaata tacagagaag ccgctctacc agggaatttg aaactgatag aactattcga
      301 tatatattgc tggtttaaaa ggtctagaat attttgattt ttctctagga tcgtattttt
      361 gtatctcatc ttctgaatga acaattatct ctgcctgtga attcccgctt tctatagata
      421 acagcttttt tgcatcattg agaggaaata tttcatcaaa aacagtcaat tttaatcgtc
      481 tgttcctagc ctcaatcgga tcagacagga tatcctctat catatttcgt atcagcttag
      541 gatcgttcct cgcttttgct gtttctggat ctttgaccag ttgtttcata atatctccaa
      601 agttagtttt gttttctaat aatatatatt caagaatctt ttgatagatt tcttgtttcc
      661 attgagctga agtatagata atgattttag tcggagagat ctttgtgact ctaagaatat
      721 tctgaagatc agatataaga ttaatgatta gttgttctga ttcctctgct attgggtctt
      781 ttttatcttc atctacaata ggccaacctg caaaaattat tgaatcattt tttccgccta
      841 taacttccca gacttcttcg cttataaaag gagcaaatgg agcaagcatt ctgatacgat
      901 tatcaagaaa tgtagctaaa gtaagagcaa taagtgaatc atctcggttt ttggccgtta
      961 ttcttttcct ataccactgc aaatcttgat caagcaaata tagtatatca tgcaatgctt
     1021 ttcttactct taacttatcc attgatactg taatatctgt aatatgattc tgcaatctgc
     1081 tgagaagcca tcgatcttct atccctgtat ttgcttctga taatattatt gatgaaaata
     1141 aagatgatcc taatttagac ttaaccatcg aatgttctct tgccatatca taaatatcat
     1201 ctaactttga ccgaattcct ttaattgctt caaatgaaaa atctgcatct tgtaatagtt
     1261 ctgcagaact caacattgct aaacgaatta catcggcact atgttctttg atagcagcgc
     1321 gcagaggaat aatgttacct agtgattttg acatcttctt tccttccata aggacagaac
     1381 cattgacgac aatttttctc ggccagtttt ctcttgtaaa aattgctaca tgattaaaaa
     1441 taaaaaatga tagatgattt tgaactaaat ctcttccaga atgtcttgca tctagaggat
     1501 aaaaatagga aaattcattt cgtatagact ctattagcga tatagaaaca ttgcactctg
     1561 ccgcgatctg cctgacatct ccatctccta aaaatatata atcaaaaaac gaatcattta
     1621 aagcatcaac attattcata tttatgatta atttactact ttcatcagaa ctgctattat
     1681 tattattagg atgattaaca tattttgcga gtatgtagta agacatatag ataacagagt
     1741 ctgacagact ttcaattatc cagtcctgat ccaatggcaa tttagtacct agaccggatt
     1801 ttcttgcgca tgctctttct ctcaaccaat cgattacata gttaaattcc tgtctgatct
     1861 cttctggaac tatatccatt ttatttatgc attcgtgtgc taattttttc catttcttat
     1921 cgccataatt tataaaccat tgatcattca atattttaac gacacattca gtaccgcatc
     1981 tgcatctaac tggcttattt attagttcaa acattatctc ggctataccg tttgatacga
     2041 tctcgttctt tatcatatcc tttgccacag ataccggcat tcctacgtac ttgccagtat
     2101 tttgtaacat ttttccttta taatattcat gtgaatacag ctcatttgtc gccttttcta
     2161 gttgtggatc ctcttgatct tttactttga atttgcttat aatcttggct gcaggtggta
     2221 tcaaaatgct atcgttacca tcgacgtctt tgttatcatc tgatccaatt attgttattg
     2281 gcattacgtc gatttttaaa ccaacaaatt cattatgaag caaaatgttc tttttcagat
     2341 cttcaatagc ctggaaatca taaggcgcat gtccgggaac agacattaca attccagtac
     2401 cgttatcaga ttcaacaaat gatgcaggat ataatgggat cgaaaccttt ctaatgggat
     2461 cctctacata tttgccagct atttgttttc catatatcga cgactgaatt gcaactttat
     2521 ggtttaaaaa ctccagtttt ctggcagctt ccttactaac aatccatctc tcattgtcaa
     2581 tctgtatcct tacatattct acattgggat tgacccataa gttagtgaca ccataaatag
     2641 tctcaggccg aagggtcgca gttggaatta tatatccgtc atctagctta aatttaatta
     2701 gtaaatattc attaaaatct ggttctacat caccgatcgt atcatgttga ctaactgggt
     2761 tttggtcttt tggacaccag ccaacaggat gggagccttg gactatcaat cctttctttc
     2821 gcaaagtatt aaattgccat gaaataaact tggaatataa tttatctatt gtagtaaatt
     2881 cccgtctcca atctatggaa tatcccatct ccttcatacc gagtttgatc tcattgtgaa
     2941 agtaacttgc aatttttatt ggttcaacaa agctttttat tacatcttct gaaatatgat
     3001 aaatgtattg aaatgtttca aagagctctt tatcaccgga tgcaattctt cgtgacatgc
     3061 ctaaaatagg tgtgccggtg taatgaaagc ccattggaaa caatacattg taacctttca
     3121 tcctcatata acgcgcatga gcatcagcaa gtgtgtaggt ccttccatgt ccaatatgtt
     3181 gaggagagtt tggataagga tacgcaacgg ttatgaaata ttttttcttt gaaaaatcag
     3241 gatcactatt gaagatctgt tgctcatccc atctatgacg ccactttttt tctattaaac
     3301 tccaatctat attgtcgtta ttgttattgt tgttcttgtt cttgtacctg ttattggtgt
     3361 taatcatgtt ttactattat cctgagatag ttttcataac tgattcttct gctgaaagta
     3421 aagcttcttg tattttggat ttgaacttac ctccaccttg tccgaatctt tcatctcctc
     3481 cacctgagcc tccaagtttg ctagaaagtt gttttgcgat aagtccggct ttgatatttt
     3541 tacctcttgc cttttcaccg acaaagacaa tcacacgaat tccttgacct ttagagatca
     3601 aagcgatata gataagggat ggatcgattt cgatagattt ttcgcctata gcaatataat
     3661 actcatcatc gagttcttcg tcataaacat tgtagagttt aattccgtgt ggtgctagtt
     3721 gtgatgcctc agcagaaata gactttgcta tcaaaggtgc aatttttcgc ataattatct
     3781 tgatcttctt atttgtctct tctgactcct gaacgccttt atggaatgtc tcaactacct
     3841 tctctctgct tgagcctaaa gattgtgcaa taacagtgag ttggttttcc tgtttttgta
     3901 tatggttcaa tgcagcttcg ccagcaacga attctaatct tactattcca tcctgtattc
     3961 tttcggcttt tataattttt ataagtccta tttcaccagt ccggcctatg tgagttcctc
     4021 cacaggcttc tatgtcccag ccttcaatat ttacaattct gatattgttg gttggaaccg
     4081 ccccaccctg ataaattcta aatgagtatt gctgttcagc atcgccacgg tcatatatct
     4141 tgattttaac cggcaaattt tgtctaatta cattattagc agtcttttca attctttcaa
     4201 tttcttctct attaagagcc gaatgatgag taatatcgag tctggcatag ccttcatcct
     4261 taaaggcaga gttctgccat acccatgatc caagattagt tctagatgat gtattaagta
     4321 tatgtgttgc agtatgatgt ttcgtaatca gatctcgtct tcgaccattt atagttgcat
     4381 agacagtttt accttcaaca atatcttttt ccctggcatt ttttaattta tgaattacaa
     4441 aatctgactg tttgattacc tctatcacat ttacgtcatc aatctctcca ttatccggtt
     4501 cttggccacc accgcgcgga taaaaggcgg tctgatctaa aataacatat ttattgtcta
     4561 ttatcttgag aaccttggct gtaaatttac ggatagattc gtcttcataa tataagagtc
     4621 ttgtaggtgc aagattttcc agaccatata tcggctgttg agtctgtgct gatgcttgga
     4681 tcgtatgaag ttcggcaagc tttgtgtaaa aagtagaagg aatgctttct attgctcctg
     4741 attccattaa aaagtctgga gtgacaccat cagattcata cattctaatg agatcctcaa
     4801 cttttatttt ctttttatta ttttttatag aagcagcaat tgagtccatt ctttctctgg
     4861 agcctatata tctgctagat tcaatctgca gaattgttct tacgtcctcc ctataatctt
     4921 caagttcagg atacatctgt ttaagataat taatatgaag atcagcaaca tcttcgagtt
     4981 ttatgttcca accaattcta tctaatattg aaagtgctct tcttagaatc actctaagat
     5041 tatatcctcc acccacattt gacggaagag ctccgtctga aattgcaaat aataacgtac
     5101 gactatgatc tgcaatggtg taaattgctt cgtaaggtgt aattattttc acaagctgct
     5161 cctcggagat ttctaattcc ttagcaatag aagattttaa ttgttttata tctctgccca
     5221 tatgttcgac tttgctagaa gctgcctcaa aatatctaga gagaaacgct aaatcttcag
     5281 aagcgctcac
//
LOCUS       DATAAS010000096         2606 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_89563, whole genome shotgun sequence.
ACCESSION   DATAAS010000096 DATAAS010000000
VERSION     DATAAS010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2606
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_89563"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(537..1283)
                     /locus_tag="VHF08_01470"
     CDS             complement(537..1283)
                     /locus_tag="VHF08_01470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="YkgJ family cysteine cluster protein"
                     /protein_id="HEX2067351.1"
                     /translation="MSSSISNSEVSVKNSLDLLSKKWKIDPKVYDLHLGKRNDVVDTI
                     VNVDGVLFHIPTLNDDSLYVLWKCLWPDCHNCCERQGRLPLTSDDIKIIAKKIGYDSK
                     AEFVKHETRISSWEEQEAFGNVITTLTMLSLKRKSDEKEEDDGTPITCRFLNENGDCR
                     IHPEKPGVCWLYPFASWLESDKGRAIVHATFQLTGDCPGFYVSKSLDDMMPVLKEYSK
                     KIYNYNMSISRTTRENYGFINFVDMRKETN"
     gene            complement(1681..2220)
                     /locus_tag="VHF08_01475"
     CDS             complement(1681..2220)
                     /locus_tag="VHF08_01475"
                     /EC_number="2.1.1.206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (cytidine(56)-2'-O)-methyltransferase"
                     /protein_id="HEX2067352.1"
                     /translation="MIIKITVLRIGYRVVRDDRVTTHAALVSRAFGSNKIFMTRVDDS
                     IIETLKDVNKRWGGESEFEIETIEDWKKMIKNWKKDGGKVIHLTMYGINIDDVIDNVQ
                     KENNVLVVISAEKAPREIYDLADYNIAIGNQPHSEIAALAIFLDRAFKGKELKRDFKG
                     AKFKIIPMAKGKRVQQMKY"
BASE COUNT          818 a          476 c          375 g          937 t
ORIGIN      
        1 tattcattgc tttacaaaga gagcatcaaa tcggcaacga agatccggtc tatttctaga
       61 taattcatcc tcaacgtcta atctctcaat ataagctgca tttccaaagt ctgctctgca
      121 ataaggacat ctaatcatga gataagtctt atttgcactt ttattatatt attaatgccc
      181 ctcggttttg cctagttaaa agatttagac ataggtggta accctcttct attttcacgt
      241 ttatcattaa atatgccatt tggccacctt atctatcgtt aaattgaaca aatgtcgtca
      301 gtcatatttg cgctgaacta ctacggtaca acgctttatc aaatcaatga tatgtgtcta
      361 tgatagtact taataaataa aaacataaaa aataaactat cttttatagt tcttcaatta
      421 tgaaaatata tctctgatca tacggaagca tctttcatca ttataggatt gaaagcagat
      481 gcaattatat ctcttaacgt ctcgtctctt cttttataaa tcaacaattt taatatctag
      541 tttgtttctt ttctcatatc aacaaaatta ataaagccat aattttccct tgtagtccta
      601 ctgatagaca tattatagtt gtatattttt tttgaatatt cctttaaaac aggcatcata
      661 tcatctaagg atttacttac ataaaacccg ggacaatctc cagtcagttg aaatgttgca
      721 tgtactattg ctcttccttt gtcggattct aaccatgaag caaatggata taaccagcaa
      781 actcctggct tttctggatg gattctgcag tctccatttt cattcaagaa tcgacatgtt
      841 attggagttc catcatcctc ttctttctcg tcggactttc tcttaagcga gagcatagta
      901 agcgtagtta taacattacc aaatgcttct tgttcttccc aactagatat tcttgtttca
      961 tgcttgacaa actctgcttt tgaatcatat cctatctttt tagcaataat tttgatatca
     1021 tcacttgtca atggaagtct tccttgtcgt tcgcagcaat tatgacaatc tggccataaa
     1081 cacttccata agacatacag actatcatcg ttaagtgttg gaatatgaaa caaaacgcca
     1141 tcgacattta ctattgtatc aactacgtca tttcttttac cgagatgaag atcatatact
     1201 ttagggtcta tcttccattt tttggacagt aaatcaagag agtttttgac cgagacttca
     1261 gagttggaaa ttgatgatga cacgttatat tttatcaaat cctatcttta aatgtgcctc
     1321 ctttgaacaa gtactgatgc atttcgctaa caagaaaaat tatgaaagtc ataatgacgc
     1381 aaagagtgaa gagaagaaaa attaaactgt aaaataagga aagaaattaa catataatat
     1441 ataatctctc tctcttcgaa gagaagaaag caaactgtgg cataagacta taactttatt
     1501 tatttaagcc acaagtacgg atggattggg atcagttgaa aagaatattg ttgttgtatg
     1561 acaaaaacaa tattaatagt agtagtttgc atacaatgtt ctttgaacaa gatagccttc
     1621 tacattggtt gacttagaca aagatcatat gttgattttg gaccgaagaa ctaattgagc
     1681 ttaatatttc atttgctgaa cccttttgcc ttttgccata ggaattattt tgaattttgc
     1741 gcctttaaag tctcttttca attctttacc tttaaaagct ctatccagga atattgctaa
     1801 agcggctatt tctgaatgtg gttgatttcc aattgcaata ttgtaatctg caaggtcata
     1861 tatctctctt ggcgcttttt ccgcactaat tactacaagg acattatttt ctttttgtac
     1921 gttatctatt acatcatcta tattgatacc atacattgtc aaatgaataa cttttccgcc
     1981 atctttcttc cagttcttga tcattttttt ccagtcttca attgtctcaa tttcaaattc
     2041 agattctcct ccccatctct tatttacgtc ctttaatgtt tctattatag aatcatctac
     2101 ccgagtcatg aatattttgt tactaccaaa tgccctcgaa accagagccg catgtgtagt
     2161 cacacggtcg tcacgaacta ctctataacc tattctaaga acagttattt ttattattat
     2221 ccacctcgat caatagctgt tctagtttta ttctattgcc attaggaaat aagagcaatg
     2281 gcatcaagtc atttaaagat aatattaaaa cctgtcgtta tatgaattag tgaaatattc
     2341 cgttgtaaag aagtattgta ctttgagcga atatatcaac ttgtgtaaat aagcgtatca
     2401 catataccat gttgagcaag aagggatctt tcatcagctt tccttgttta ttcattttat
     2461 ggattaaata ataatatctg tttttgactt ttatcgactg acgactaatg tcaactacaa
     2521 gcagaacaag atcagaattg catcctaaag ttttgatcta aatgcatcaa tgataataaa
     2581 aatagatgtt tttttatcat tgatgc
//
LOCUS       DATAAS010000097         3877 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4413408, whole genome shotgun sequence.
ACCESSION   DATAAS010000097 DATAAS010000000
VERSION     DATAAS010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3877)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3877
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4413408"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(745..1947)
                     /locus_tag="VHF08_01480"
     CDS             complement(745..1947)
                     /locus_tag="VHF08_01480"
                     /inference="COORDINATES: protein motif:HMM:NF024758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat-containing serine
                     protease family protein"
                     /protein_id="HEX2067353.1"
                     /translation="MGQTAEDIRDNIVKITDENGNCVGTGFFIRKEYCVTCHHNICPL
                     EEIYVEREEDPEKGREKRRYHAEWIEEFSDMQKDTAFLKVQGADFKPLEYRTETYGNI
                     PVVVRGFPLLDLYNFPDGKDERGTLADIPVRFRWKEEEIVVVESQDKKKNWNIKPEVD
                     VYVYAFNGKFHVGFSGAPVCYQHDWKIVGMFAAKDDNQGYIIPMNIVSEKLPKPPGGS
                     QVLTPSHTLDSERIVDLGNTYYEKHEYTKAIEQYNIILNDANYVRAWYNKGLALENLG
                     KHQEAIACYDKALEIDPNAAPVCNNKGNALANMRQYGEAIACYDKALEIDPNYVDAWY
                     NKGIALANLRKYEEAIKQFDEALKLYPDYVDAWTNKGNTLLILGKYEEAIKCIKEATK
                     IKSKYVNA"
     gene            complement(1981..2319)
                     /locus_tag="VHF08_01485"
     CDS             complement(1981..2319)
                     /locus_tag="VHF08_01485"
                     /inference="COORDINATES: protein motif:HMM:NF041216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CU044_2847 family protein"
                     /protein_id="HEX2067354.1"
                     /translation="MGKLVKLETEHGSILIESSISERSGSLQQAGGGISDIKKKLEDM
                     LDVITPISESIIGSVDKLSKLPDSITAEYGLSITAEGNLFVVKAAGEASLKVTFAWSP
                     DKKDKRVEEP"
     gene            complement(2501..3439)
                     /locus_tag="VHF08_01490"
     CDS             complement(2501..3439)
                     /locus_tag="VHF08_01490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067355.1"
                     /translation="MLKSPTEPIKFIKFMPFGKGLAILIPVLVLVVAPLLAAAIVTST
                     GYYGDILFSFASFYITTVDMVLIVISIAYGMFPILYNIFRSFRKHAEYAGREYRTVTK
                     ILRIEIPLLAIFTLYYFFFSPSNFEINYFYDLETLIWESEFFYFLDGIFVNSMYGMLY
                     SVVGGLLWIAFIRINKDFYFYLAKGCFQNILEKNEVGKMESMIGGLRYYNEYLEKVLR
                     LKINNIDQVFSKLLSDSKIDKQKVIKTIHHAFEENDRLQPINCISTALGIQETEKLLA
                     RQPVAEKIKNWTTYVIATIIPFMVSIIQLLFPSAPK"
     gene            complement(3734..3807)
                     /locus_tag="VHF08_01495"
     tRNA            complement(3734..3807)
                     /locus_tag="VHF08_01495"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3771..3773),aa:Ala,seq:ggc)
BASE COUNT         1165 a          744 c          635 g         1333 t
ORIGIN      
        1 ggtgggattt gaacccacga cctcagcaat aattttctta ggctggtgct ctttacctca
       61 atatatctaa acgggcacaa gctatggaaa ggaaacttag ctgttcaaat cccacaggtc
      121 catcaattct ccttcttttt cttttcgcac gctctcggta ataggtatag ttaatcaaag
      181 ttttgtgtaa aacggctacc agggcggtaa gagagtaacc aactataaca gcttttggtt
      241 ttagtggttt gacaacaaga gaagtatgaa atttaagtca gctcataaga ccgttacaca
      301 acatattgga tgcagtatac attagtatgg atatatccat atggttctga aaaggtgtgg
      361 ctaagtatct gcatagagat ataaatgaat tagattttgt tcaaaaattg aaccctgaca
      421 tctggtggtc catttacctt ggatgtcact gtaggattgt gagctattat ttgtccatgt
      481 tgctgtgcaa ccaatagagg gacttgaata aaatttggtt cagatgcagt attattaatt
      541 ttgaagctat ttattcttca gtctaatagt atcgtattat ttcatgatta aagctttgaa
      601 ccctttacta tttcttatac tcccaaagtc tttttattgt ctaagttaat gtatttacta
      661 ttatcaattt agattgctta tgtcggctat accgttttga gtattgagta ttataatttt
      721 taaactcgaa ccttgatctt tgtatcaagc atttacatat tttgatttga tttttgtagc
      781 ttctttaatg catttgatag cttcttcata tttgcctaaa ataagaagag tattaccttt
      841 gttagtccag gcatcaacat aatctggata tagcttcaat gcttcgtcaa actgtttgat
      901 ggcttcttca tatttacgta aattagcaag tgctatgcct ttgttatacc aagcatcaac
      961 ataattcgga tcaatttcta aggctttgtc ataacatgct atggcttctc catattgacg
     1021 catattagca agagcattgc ctttgttatt gcatacgggc gcagcatttg gatcaatttc
     1081 taaggctttg tcataacatg ctatggcttc ttgatgcttg cctaaatttt caagagccaa
     1141 gcctttgtta taccaagccc taacataatt tgcgtcattt aaaatgatat tgtactgttc
     1201 tattgctttt gtatattcat gtttttcgta atatgtattc cccaaatcta ctatcctttc
     1261 tgaatcaaga gtgtgtgatg gagttaaaac ttgtgatcct ccaggcggct ttggcaattt
     1321 ctcacttact atattcattg gaattatgta cccttgatta tcatctttgg ctgcaaacat
     1381 cccaacaatt ttccaatcat gctgatagca tacaggagca ccgctaaatc ctacatgaaa
     1441 ttttccattg aacgcataaa cgtaaacatc gacctctggt tttatattcc agtttttctt
     1501 tttgtcttgg gattcaacta ctactatctc ctcctctttc catctaaatc ttacaggtat
     1561 atctgcgagc gttcctctct catctttacc atcaggaaaa ttatacaagt ctagcaaagg
     1621 aaagcctctt accacaacgg gtatattgcc ataagtctct gttcggtatt ctagaggctt
     1681 aaaatcagca ccttgcactt taaggaatgc tgtgtccttt tgcatatctg aaaattcttc
     1741 aatccattcc gcatggtatc gtcgtttttc tctccctttt tcggggtctt cttctctctc
     1801 aacatatatc tcttctaatg ggcatatgtt atgatggcat gtaacgcaat attctttgcg
     1861 tataaaaaac ccagttccaa cgcagttacc attttcatca gtaattttta caatgttgtc
     1921 tcgaatatct tcagctgtct gacccatagt tctatgcatt gacctccttt ttctctactt
     1981 ctatggctct tccactcttt tgtctttctt atctggactc catgcaaaag taacttttaa
     2041 gcttgcttca ccagcagcct tgacaacaaa taggttacct tcagctgtta tgcttaatcc
     2101 atattcagca gttatggaat ctggcagctt tgatagttta tcaactgagc caataatcga
     2161 ttcggatata ggagttatga catctagcat atcttctagc ttctttttta tatcgctgat
     2221 tccaccacca gcctgctgta atgaaccact cctttcacta attgagcttt caatgagaat
     2281 tgagccatgc tctgtctcaa gcttcactag cttgcccata tattgtagca atctaaaaca
     2341 tgctattgaa ttaaagttgc gatatacttt gttcataata actaatctaa tctctcagat
     2401 tccagaaaaa aatagtttta tcgaactaaa gatgcggaca agtaatagta tacagtatta
     2461 atgagaaaaa tatattgtgt aattcttggt catatctcta ctattttgga gcagatggga
     2521 ataacaattg tattatagaa accatgaagg gaattatagt cgctattaca taggtcgtcc
     2581 aattctttat tttttccgct acgggttgcc ttgctagaag cttttctgtt tcttggatac
     2641 ctaaagctgt cgatatacaa ttgataggct gcaatctatc attctcttca aaggcatgat
     2701 ggattgtttt tattactttt tgtttatcga tctttgaatc agatagaagt ttagaaaaaa
     2761 cttgatcgat attatttatt ttaagcctta gaactttttc caaatactca ttataatacc
     2821 ttaaacctcc tatcattgat tccatctttc cgacttcgtt cttttctagt atattttgaa
     2881 agcatccctt tgcaagatag aagtaaaagt ccttatttat tctgatgaat gctatccaaa
     2941 gaagaccgcc aactactgaa tacaacatac catacatcga atttacaaaa ataccatcaa
     3001 gaaagtaaaa aaattctgat tcccaaatta gtgtctcaag atcataaaaa taatttatct
     3061 caaaattact cggagaaaag aagaagtagt aaagagtaaa gatagcaaga agagggattt
     3121 cgatacgtag aattttcgta actgtgcgat attctcttcc agcgtattca gcatgctttc
     3181 tgaacgacct aaatatatta tataaaattg gaaacattcc ataggctata ctaataacta
     3241 tcaaaaccat gtcaactgtt gtgatataaa atgaggcaaa actgaaaagg atgtctccat
     3301 agtagcctgt agacgtaaca attgctgctg ccaatagagg agcaaccact aaaacgagta
     3361 caggaattaa tattgctagc cctttaccga atggcatgaa tttaatgaat tttattggct
     3421 cagtagggga ttttaacatc gaatatccta caatggggaa aaagaaattt cttgttcata
     3481 tccatctttg ttttcttact attgttcgct agtaatcaat acagcgtgtt aaacgtaagc
     3541 agcaagccat tagatctaat gctaccgctt tggcaactaa ccagtgacta taagaatgaa
     3601 tactcctaaa aacaatgtca tttattatcg tacaaacggt agtagaatac ggcattgtca
     3661 ttgctaggct ttttgaccga caattatcca aattgaattc aaactaatac cgtatttcca
     3721 tcacagtaaa aagtggaccg ggtgggattt gaacccacga cctcagcaat gccaatgccg
     3781 tatcctaccg gactagacga ccggcccagc aacaattcaa ggttttggaa cgatattaaa
     3841 atgatacgtt taggacgttt aaacggaata taagtaa
//
LOCUS       DATAAS010000098         8093 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4954055, whole genome shotgun sequence.
ACCESSION   DATAAS010000098 DATAAS010000000
VERSION     DATAAS010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8093)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8093)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8093
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4954055"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            680..2005
                     /locus_tag="VHF08_01500"
     CDS             680..2005
                     /locus_tag="VHF08_01500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX2067356.1"
                     /translation="MQDVYNIAIIGGGILGASLAYFLSSVSHSKIILIEQECDVAVHT
                     SSRNTGKVHAPFLYDPVKKKIFAKAASLGYEMWQAYSHYKNIFFKQDGVLEVANDQLG
                     IDRLHKYMKWGEANGLRREHDFKFLDRNETKTIEPNVHCSSAIYCSKDASVDYGSLTK
                     NLIHDCKLFGCTVLIGHRVKRILRSTENRMLTLVLEQGNEKKINTEFVVNAAGGNSID
                     IAHSLGIAMELTDLHFKGEYWLAPPEYNDLTKRSIYSVPKYPEYPFLDPHWIVRVDGR
                     CEVGPNAVPVFGPYAYTLSKNLKYFIPKICESLRSSGARKIFFDKQFLFLASNELKSS
                     LSKTTMINRTREFLPQLRASAFIQRGTAGIRSCLVDKDGKFLPDTLIIKKDHSLHILN
                     YNSPGATGALPMAAILVNQLIEDGTVVPNPSGASKSLWDIRSISEKMQL"
     gene            2904..2977
                     /locus_tag="VHF08_01505"
     tRNA            2904..2977
                     /locus_tag="VHF08_01505"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2938..2940,aa:Pro,seq:cgg)
     gene            complement(4185..4500)
                     /gene="ffs"
                     /locus_tag="VHF08_01510"
     ncRNA           complement(4185..4500)
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VHF08_01510"
                     /product="signal recognition particle sRNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01857"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="archaeal-type; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01857"
     gene            complement(4738..5595)
                     /locus_tag="VHF08_01515"
     CDS             complement(4738..5595)
                     /locus_tag="VHF08_01515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00269 family protein"
                     /protein_id="HEX2067357.1"
                     /translation="MQSIEEKAAKTMSKFSMLNYNDRVAVAVSGGKDSLALLYVMKKI
                     FEKHDRSDVIAITIDEGIEGYRNESLQIVKKFCSDLKIESKILSYKNLFGIDMDKAMM
                     TRPSDKMTSCSMCGTFRRRAIDLAAESVGANIIATAHNLDDQLQTFTINLFAGDIERI
                     GWIYPEPVQYGSNGLKKIKPFVEIYEHEIAFYALQRNIPFQSEECPYMHESIRTDIRE
                     FLNKLEKGHPGIKYNTYNSILKISKSMKSVSLIHTPKKCSVCRRDSTGDICSVCRTVG
                     ILTSNNRLA"
     gene            5793..6335
                     /locus_tag="VHF08_01520"
     CDS             5793..6335
                     /locus_tag="VHF08_01520"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX2067358.1"
                     /translation="MLKTFKHQQRSLNVQLDSDLLDNINLKIIDFLSKDSSTPFVEIA
                     KQIGISDATVHIRVRRLLAAGIINKFTISVDNNRLGYDHLAFMGINVEPGFAEELTDE
                     LSKVDEVLEIHEMHGRFDLLLKVRAKDLDQMRDIVVNKIRILPHIIETELMTVLKSRK
                     EEQIVSLKKELSDNADGLTL"
     gene            6782..7546
                     /locus_tag="VHF08_01525"
     CDS             6782..7546
                     /locus_tag="VHF08_01525"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HEX2067359.1"
                     /translation="MQFVQISDMHIGGLFKQDSFNTIVQEVNNLKPDAIIISGDLTDD
                     GLIFQFQQAHTEIKKFNCSNLIVFPGNHDYRHTGYLLFKKFFPSSKQIYEFDDVVVLT
                     VGTARPDRDEGEVGHRQNLWIEETLSKYVNKTKIVAMHHHLIAIPDTGYTNVVGILDA
                     GDTLRAFLESKVDLVLCGHKHRPWLWNLGSLKIAYAGTACSWRYRGIFEDTYNIIDVR
                     DGKIDVNIKIVGGKRMPLSDVVKKYETEIRNTILSK"
     gene            7884..>8093
                     /locus_tag="VHF08_01530"
     CDS             7884..>8093
                     /locus_tag="VHF08_01530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067360.1"
                     /translation="MNNIIKLLIEIVIVVTVTAILSRVFANNTTIIHATNNTASEINN
                     TIASINGNKASKVKVVASFYPIYDFV"
BASE COUNT         2834 a         1321 c         1313 g         2625 t
ORIGIN      
        1 gacataaatt accgataatg cttcaattct ttatatatta ctattgtttt tttattgact
       61 agtgcatctt aaagatataa aactataaat cgtaagattg taaaagtaac acaagatgca
      121 acagcatgaa cattaactaa aaataaacaa acaaacctta gcaacgataa taatgccaaa
      181 aggctataac tggatgtatg tccatacagt cactctgtct tataacatga caagtagttc
      241 tgactttaca aatgcatgta gaaaaacgtt acttgttctt caatatcttg attctgatct
      301 tgggtcatat taccatagat gtagctaata acagctttta gttatataca tatttataat
      361 aataaaatag aacattatgg ttgattggca aaaatctacc tactgctttc tatacactgg
      421 cttattcaat atttgaataa aagagaaaat attattgctt acaatttaag caaagaaaca
      481 aataatcagt agagaaaatg gatccgcaat tcttacgaca gaagaggtaa aatattacgc
      541 tttgaaggaa agatattaaa ttcatcattc cattgtcaca attttatata gcaatagatt
      601 ttaaaagctc atagtataat tgattttatc tattattaaa atgcgttttt atattcttta
      661 agtctaacta atttataatt tgcaagatgt ttacaatatt gcaattattg gcggcggtat
      721 tttaggtgcc tccttagcat attttttgag ctctgtatct cattcaaaga taatacttat
      781 agaacaggaa tgcgatgtag ctgttcatac aagttctaga aatacaggaa aagtacacgc
      841 tccttttctt tacgatccgg tgaaaaagaa aatttttgca aaagctgcat cgctaggata
      901 tgagatgtgg caagcctatt cacattataa aaacattttt ttcaaacagg atggagtatt
      961 agaagtagcg aacgatcaac ttggtattga tagacttcat aaatatatga aatggggaga
     1021 agcgaatggc ctacgtagag agcacgattt caaatttctc gatagaaacg aaacaaaaac
     1081 gatcgaacca aatgttcatt gcagttcagc catatattgt tcaaaggatg catctgtaga
     1141 ttatggttct ttgacaaaga atctgataca cgattgcaaa ttgtttggat gtacggtcct
     1201 aatcggacat agagtaaaaa gaatcttacg atctacagaa aacagaatgt tgacattggt
     1261 gttagaacaa ggaaatgaaa aaaaaattaa tactgaattt gtagttaatg cagcgggagg
     1321 taattccata gatatagctc attctctagg tattgcaatg gaacttaccg accttcattt
     1381 taaaggggaa tattggctag caccaccaga atataatgat cttacaaaga gaagtattta
     1441 ttcagtgcca aaatatccag agtatccttt cctagatccc cattggattg tacgtgttga
     1501 tggaagatgc gaagttggtc caaatgcagt tcctgtcttt ggtccctatg catatacttt
     1561 gagcaagaat ttaaagtatt ttataccaaa gatatgtgaa tcattaagat catcaggagc
     1621 ccgtaaaatc ttttttgaca aacaattctt gtttcttgcc agtaatgaat taaaaagttc
     1681 gctctctaaa actacaatga taaatagaac aagagaattt ctgccgcagc tgagagcatc
     1741 tgcattcatt caaagaggaa ctgctggaat tagatcatgt cttgtagata aggatgggaa
     1801 atttctccca gatacattaa tcataaaaaa agatcattca ttacatatcc taaactataa
     1861 ttctcctggt gctacaggag ctttaccgat ggctgctata ctagtaaatc aattaattga
     1921 agatggaaca gtggtcccaa acccttctgg agcatcaaaa tcactttggg acattcgatc
     1981 aatatcagag aaaatgcagc tttaagctat tatagagtat taagataaac actaaactta
     2041 ttctcattat taaaaataga aaaattatac ttattgcaaa ggcaattaca gactgtactt
     2101 tttaccaagc tatcttctaa taccatatca cgtccttgca acaacatttg aaagcattgg
     2161 atgatgaaaa atttcgagac ttaattatgc tatttttaat agctaaaagc atgaacgaaa
     2221 gatgatgctt tgaattttat tacatcaaaa gattatttaa ttttattacc tgagcttcaa
     2281 ataaactttc aaaacaaact gtgtcttcta gtgcctatgc catctcttaa ttaatgtatt
     2341 gataaacaca attttggtat agagaatgtc ttttttttag tttctgttgt gtaaaatatc
     2401 tgatagaagt tggcccgcta ataattgtgt atatcatggc aatatgtctg catgaacttt
     2461 gtattttgaa tagtgattct gtctataatt atcaaagtgt gacatctttt gcatctatat
     2521 cattaaccgt acataaggtt cacacatatt aaatatttta gcaaatagac gaaccgcaat
     2581 atgatctcat ttttatctta ttttgtttaa cctaatctat gacaataaaa gaagacgaac
     2641 atgcacatca tcctagatgt gagtcatgtg gaaaagagtt taataacgca actgaaatca
     2701 gtgaccatat cgatagaatg cacagaaata gtaggtgata cacacaactc ctgttgcaaa
     2761 aaagcaattt attttttaat tcataaatca gagtgaagta attattgaat agttatactt
     2821 atgtctaaat ctacttctgt ttctagtatt accaatattt tataatacgg aaacatagag
     2881 tcatacagaa atacaaaatt tttggggccg ttgtctagtt tggtatgatg ccagcctcgg
     2941 gcgctggaga tcgctggttc aaatccggcc ggccccatga attctcggtt caaattctaa
     3001 agaaacaaac agaaaaatac tattgccaga acaactaatc aaaccattaa aatcctgtca
     3061 taaccttcta ttaacaacta tgggatagat gtgtatataa gatagagata cttgcatatg
     3121 gattaaagag tatatgcaga ccaagtccgg ataaagtcga cattttaata tttgtaaaca
     3181 tatgcaggac aaggaaagag ccatcttgtg gataatgcga tatatttctt ttataattcc
     3241 caaaagagaa tatcttgcaa agccttttag aaatgctact aaggagtata ttagatctac
     3301 taaatgtatg aagcaaaaag gtcaaaggta ttactaaaaa gaaaaattca gacagttttt
     3361 gaagttattt tataagaaga atttatggta ataacgaatg ataataacaa atactagcta
     3421 tgagatataa caatcacaag aagcaacaaa acaacaggaa ttaataatac tgactgcaat
     3481 aaggcgttca gttaggcttc atatctaaat atcttaaaaa tatattataa attattagtt
     3541 atttgttgct ttttgtttgt ataatagttc tacaatataa tagttagtag tgattaactt
     3601 ctatatttag tctattcaag tgacgaagtt tctagaaaat acactattgc actattaata
     3661 gaaattgttt ttacttatat aaaagcaaga ttctgcatta atattcaggt gttctattga
     3721 atataatatt gatcgacatt aatattacaa tttctattat ctaataatga aattattata
     3781 catgtttaac aaaggagcgt gcagatgatg cggagtatac cttactccta tttcagtcta
     3841 cactatctgt aaggagtata ttatgatgga tagtggtaaa tgtgagagaa tggacgatgt
     3901 cactcatttc ccatactttc tgcagagttt catacaaaat caagatcgta cattaagaaa
     3961 ataaataatt atcaagacag atttgtattg ttatactaaa aggcttcatt aaaaaggcca
     4021 aacaagacaa agtaatgcat ctagaacaga ttatttaaga tctgaatcac tattgccatg
     4081 aagggaagaa aactagagct gatcatgtta tagatacgag aaaaggatag gatagacgcc
     4141 tactgtatag gattaataat gtgtcccaat ataatatttt ataaaggcgg ggcagcctac
     4201 tggtaccacc ataaacacaa ggtcccatct caagctttac aagatccacc acgtagacgt
     4261 gccagcatga ctatgccgcc ttagggttgc tccctcccgg acctcaccca tttcaacgat
     4321 tcacagtcga aactgcgcct tcacgcagta cgctgttcat aaccatccga cacggcgtga
     4381 tttcatttca gcaagtcaag caggtgcctt ccatctatgg atttacccag cagttactga
     4441 tcccagcatg aagccgattt ctgatatggg gtacggctgg caccccgatc ctccctgcct
     4501 ccgcaactct attacgcagt ttcattatat ttgcttatca cttctctata tcttctaatt
     4561 acaattggtt taaaggataa attggtttaa ctaaatcagt ctaatatcgc atatgaaggt
     4621 gtgactgttt cttaaaatcc ataatatcta tatggatggt gatatatcat ctataataat
     4681 taataacgcc tgacaatcaa gcttaaatta cccaccaagg ctgtaataag gaatacttta
     4741 agctaaccta ttattactag tcagaatacc aacagttctg caaactgaac agatgtctcc
     4801 agtagaatct cgtctgcaga ctgagcattt tttcggcgta tgtattagtg atacagactt
     4861 catactttta gaaatcttta agattgagtt gtatgtgtta tatttgattc ccggatgacc
     4921 tttttcgagc ttgtttagaa attcccgaat atcagttctg atgctttcat gcatatatgg
     4981 gcattcttct gattgaaatg gaatattcct ctgtaaagca tagaatgcta tttcgtgttc
     5041 ataaatctct acaaaaggtt ttatcttctt caagccattt gaaccatact gaaccggttc
     5101 agggtaaatc caacctatcc tttcgatatc tccagcaaaa aggtttattg taaaagtttg
     5161 taattgatca tctaaattgt gtgctgtcgc tatgatattt gcacccacag attctgctgc
     5221 caaatctatt gctcttctac gaaaagtgcc gcacattgag caagaagtca tcttgtcaga
     5281 aggtcttgtc atcatagctt tatccatatc tataccaaat agattcttgt aactgagaat
     5341 tttactctct atttttagat ctgaacagaa tttttttacg atctgcaatg attcattacg
     5401 ataaccttct attccctcat ctattgttat agcgataaca tccgaacggt catgtttctc
     5461 aaagattttt ttcataacat atagtaacgc taaactgtct ttgcctcccg aaacagcaac
     5521 tgctactctg tcattataat tgagcatcga aaacttggac atagttttgg cagccttttc
     5581 ttctatagac tgcataaagc attttttgca tagatactct ccagaataag atctataaaa
     5641 tacacttaat ccattatgac atttattgca aggtctctgt gacattgaat atattaaatc
     5701 aataagtatt attatttctt gatatcagta acatgaacca gaacaattct tatgttcctc
     5761 ataataaaga gatatcatag gaaaatgttg ttatgttaaa aacatttaaa caccaacaac
     5821 gtagtttaaa tgtgcaatta gactcagacc tattagacaa tataaatctc aaaataatag
     5881 attttttgag taaagactca tcgacaccat ttgtcgaaat agctaaacag attggtattt
     5941 cagatgcaac agtgcatatc agagtcaggc gtctgcttgc agcaggaatt attaataagt
     6001 tcacaatttc cgtagataac aatcgacttg gttatgacca ccttgctttc atgggaataa
     6061 atgtagaacc tggatttgca gaagagctta ctgacgagct atcaaaagtt gacgaagtat
     6121 tggaaattca cgaaatgcat ggcagatttg atttgctttt gaaagtccgc gctaaagatt
     6181 tggatcagat gagagatatt gtagtaaata agatccgtat attaccccat attatagaaa
     6241 cagaattaat gacagttctg aaatccagaa aagaagagca gatagtctcc ttgaaaaaag
     6301 agctctcaga caatgctgat gggttaacat tataaataag gtttaatcaa cttgtgaaat
     6361 tgaagcatag atgatatgtg gatttaaatc caatttttat catgtcgagt gaaataatat
     6421 aaaggactat caattaatta ttgacaagat tatcgcgggc aatcagagtg aaggctttag
     6481 tgccatcaca aatattgatt cactgatgga tttgttttag accatcttgc agataagcat
     6541 taaatttact acaagtaatt atatcatacc actagtaact actctactaa agccttattt
     6601 caaaatcact attctaccaa ttattgtgta tgtcaatgca tatactaaca catcatgatc
     6661 atttacatca actactaatc aaaagctgaa taacatgcaa atgagtttta acaacacaac
     6721 taatttccag tttatcagca ttctattaat atattatgtt gttaggaagt agaggtagat
     6781 aatgcagttt gttcagatat ctgatatgca tattggtggt cttttcaaac aagattcttt
     6841 caataccatt gttcaagagg ttaacaattt aaaaccagat gcaataatta tatcaggcga
     6901 tctgacagat gatggtctaa tatttcagtt tcagcaagct catacagaaa tcaaaaaatt
     6961 caattgttct aatttaatag tttttcccgg aaatcatgat taccgtcata cgggttatct
     7021 tttgttcaag aaattctttc cttcttcaaa gcaaatttat gaatttgatg atgtagttgt
     7081 acttactgtc ggaaccgcca gacctgatag agatgaaggt gaggtaggac atagacagaa
     7141 cctatggata gaagaaactt taagcaaata tgttaacaaa acaaagattg tagcaatgca
     7201 tcatcatttg atagctatac ctgatacagg atataccaat gttgtcggta ttcttgatgc
     7261 aggagacacc ttaagagcat tcttggaatc taaagtagat ctcgttctct gcggtcataa
     7321 gcacagacct tggctttgga atttgggatc tttaaaaatt gcatatgcag gaaccgcctg
     7381 ttcatggcgc tataggggaa tatttgaaga tacatacaac atcatagacg ttagagatgg
     7441 taaaattgat gttaatataa aaatagtggg aggaaaaaga atgcctcttt cagatgtagt
     7501 taagaaatat gagactgaga taaggaatac aatattatca aaatagtcgt ctattagttt
     7561 cgacatgttt taacctgtct cctccttcct cattacatta ttgtgcttat tagataataa
     7621 ttgtcaaatg gtatcgtgtc aaccacatta gtttgtaacc tatgcagtat aacaatatta
     7681 tatgattatt tattacacat atagtttcta tagtgcaatt catattatta tctgcttatt
     7741 attttcatca tagtatgtat agatcttcca ttgcaaaacg ctgaacatat accacaataa
     7801 ccatgttctc ttttttaccc caagataaat aaaatcatat tattaataaa agtatatatc
     7861 attattaatt ttaatatata atattgaata atattattaa gctgctgata gaaattgtaa
     7921 tcgtagttac agtaactgct atcctatcaa gggtatttgc aaataataca actattattc
     7981 atgctacaaa taatacagct tctgaaataa ataatactat tgcaagtata aatggaaata
     8041 aagcgtctaa agtaaaagtt gttgcatcat tctatccaat atatgatttt gtt
//
LOCUS       DATAAS010000099         3940 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_92589, whole genome shotgun sequence.
ACCESSION   DATAAS010000099 DATAAS010000000
VERSION     DATAAS010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3940)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3940)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3940
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_92589"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..684)
                     /locus_tag="VHF08_01535"
     CDS             complement(<1..684)
                     /locus_tag="VHF08_01535"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025217.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2067361.1"
                     /translation="MEGENECNEGFLKCNKCEAIYPIIDGVAIIVNDFAKYAEGRISM
                     FGKWLVNSKTKEMKGYLKDFGSEISTSSSIKDDRYEEGGAWYIPYRWAQYDHSSDDRL
                     LSTLRWQLKPNELYNRVIHGVNPKMDGVALDMGCSLGYSTLQLAKKFAFIIGIDLSFS
                     FIRDARKRMYSSKQGNLDFCVADSLRSPFNSMKFDLILALNLIELVKPRELLLSIHRL
                     LKPHADVIVT"
     gene            1159..1776
                     /locus_tag="VHF08_01540"
     CDS             1159..1776
                     /locus_tag="VHF08_01540"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067362.1"
                     /translation="MSLKNYSSKKWMFKVTKFRMMAAYGLIAGFVSSLAISGLLLLVE
                     KAISLPIGTFYLVISSTLIESQEYYSLDKIIFGFIMHITAGSIIGLIMCIPFIVFKDK
                     SVRSMQRYAVPYGLGFGFALWLFLFIPVTLWIILPILDTSQERTVIQEVPAQVDVMFT
                     TDMVAMLVDRVMIGAVAFNMLYGLLAAIIIKTLFEESLKNKPNIL"
     gene            2059..3252
                     /locus_tag="VHF08_01545"
     CDS             2059..3252
                     /locus_tag="VHF08_01545"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2067363.1"
                     /translation="MVNIVHINLNARGGSERLALAVIRALKEDNDMDIDIDLTTLQKP
                     DVHKIEETYGKTGLMAVRNINRVNIIPSIENVQLKKKYDLIINTHGDMFPFSQKDFSK
                     DNAITYCHFPLAKYLIDVENEEYARLIYGQRFSDMVEYKKHLHLARNAYIDMIRNSTV
                     LTNSEYSRKAIYKTFKIDSTVLSPPVDVDLFRKAVLFSSMNKRDDTILVISRFHPSKK
                     VENAIRLAELLKQKGIGRSMKIVGNLSPHMIGYYSYLRQMVQDQDLSDYVTFHVNVSF
                     NKLLSLMSKSKVYFHPLPGEPFGISTVEAMSAGLIPVVPDLGGHTEFVPLRYQFCTFL
                     EAMESVAVAMDASFSERIRISDSVKRFSTSNYIRRFQQIVKKLLLSATKTNYKNIKSV
                     SPIVS"
BASE COUNT         1329 a          622 c          632 g         1357 t
ORIGIN      
        1 tgtcactatg acgtcagcat gtggtttcaa taatcgatgt attgacaata atagttccct
       61 tggtttaacc aattcgatga gattgagtgc aagtattaaa tcgaatttca tagagttgaa
      121 tgggcttcga agagagtctg ctacacagaa atcgagattt ccttgctttg aagaatacat
      181 tctttttcgg gcatctctta taaaggaaaa tgataaatca attcctatta taaatgcaaa
      241 tttttttgct agctgcagag tactatatcc caaagagcaa cccatgtcaa gtgcaacacc
      301 atccattttt ggatttacgc cgtgaataac cctattgtaa agttcgtttg gcttcaactg
      361 ccatcttaga gttgaaagga gtctgtcatc agaagaatga tcatattgtg cccatctata
      421 cggaatatac caggcaccac cttcttcata cctgtcgtcc ttaatggaac tagaagtaga
      481 aatctcgctt ccgaagtctt ttagatagcc tttcatttct tttgttttgc tatttactaa
      541 ccacttacca aacatagata ttctgccttc agcatatttt gcaaagtcgt ttacaattat
      601 tgcgacgccg tctattatcg gataaattgc ttcacattta ttgcatttta aaaagccttc
      661 attgcattcg ttctctcctt ccatatggag aggttccaaa ctaagacgta tctgtttatc
      721 acgatgattt agacatatta aatggtgtga gaattgagtt ttcattattg atcagtcaaa
      781 ttatagtagt caattataaa ctacatctaa tttgtctatt agaagcctat atatgttaac
      841 gtaaaaaatg gtacgtatat acgaatccgt ctcttttgta taataatgca actctgtcaa
      901 tctaattctc gaaatatatg ctctctcagt ctttgttgtc ttgacgtatt tcctattttt
      961 atatgacatt gtaaaagaga tcttttgtcc aaattatcta ttttgtctta taaataatat
     1021 attgatatgt gtattcttag caaaatttac tttatttata tttcataagt cacgatatat
     1081 atattattta ataatatttt atgtattatt tgtttttgtc ataataaaag taaaatacca
     1141 ccttcacgta tgattattat gtcactaaaa aactactcgt caaaaaaatg gatgttcaaa
     1201 gtgacaaagt ttagaatgat ggctgcgtat ggactgatag caggatttgt atcatccctt
     1261 gctattagtg gattgctatt gctggttgag aaagctatct ctcttcctat cggtacattt
     1321 tatcttgtga tatcatcaac acttatagaa tcacaagagt attattcttt agataaaatt
     1381 atctttggat ttataatgca tataacagca ggaagcatta tcggactcat tatgtgtata
     1441 ccttttattg tattcaaaga taagtctgtg agatctatgc aaaggtatgc agtgccatat
     1501 ggattaggat ttgggtttgc actatggtta tttcttttta ttccagtaac actttggata
     1561 attcttccta tactagacac tagccaggag agaactgtaa tacaggaagt gcctgcgcaa
     1621 gtagatgtga tgttcacaac ggatatggta gcgatgttag tagatagagt aatgattggt
     1681 gcagtagctt ttaacatgct gtatggttta ttggcagcaa taataataaa gacattattt
     1741 gaagagtcat tgaagaataa acctaacatt ctttagtata cctatatcac ctaagcaaga
     1801 tgacgatatt acagagaact tcttggcaat acaataatag tatggttatt gtaaattata
     1861 ctctctaggt agtcacttat cttttgattc actgatttat cattctacat gttgaaaaac
     1921 taacgtcaga aaccgattaa tgcatatgat aattatacaa actttcaaca aaatctttta
     1981 attctttaag cacaaatttg aagaaattat caaaacgtta taatattaat ctgcccaaat
     2041 tatagatgat tttatttgat ggtcaatatt gtacatatca atttaaacgc tcgaggcgga
     2101 agcgaacgtc tggcattagc ggtgatccgt gctcttaaag aagataatga tatggatatt
     2161 gatattgatc ttactacatt gcaaaaacct gatgtccata aaatagagga aacctatggt
     2221 aaaacaggtc taatggctgt tcgcaatatt aatagagtca atattatccc atctatagaa
     2281 aatgtgcagt tgaaaaaaaa atatgatcta attatcaata cacacggcga catgtttccg
     2341 ttttcgcaga aagatttctc aaaagataat gctattacat attgccattt ccctcttgca
     2401 aaatatctta ttgacgtaga aaatgaagaa tacgccagac tgatctatgg acaacgattc
     2461 tccgacatgg ttgagtacaa gaaacatctt catttagcaa gaaatgcgta cattgatatg
     2521 attagaaatt caacagtctt gacaaattca gagtatagtc gcaaggctat atacaagaca
     2581 tttaaaatag attctactgt tttgagtcct ccagttgatg tagatttatt tcgcaaagct
     2641 gttctttttt cctcgatgaa taaaagagat gacacaattt tagtaatatc tagatttcat
     2701 ccaagtaaaa aggtagagaa tgcaatcaga cttgcagaat tattaaaaca aaaaggaatc
     2761 gggcgaagta tgaaaattgt tggaaatctg tcaccacaca tgattggcta ttattcctat
     2821 ctgagacaga tggttcaaga tcaagattta tcggattatg tgactttcca tgttaatgtc
     2881 agctttaaca aactactttc tctaatgagt aagtctaagg tatatttcca cccgctacca
     2941 ggagagcctt ttggaatatc tactgtagaa gcaatgagtg caggattgat tccggtggtt
     3001 ccagatttgg gaggacacac agaattcgtc cccttgagat atcaattctg taccttttta
     3061 gaggctatgg aatccgttgc agttgccatg gacgcatctt tttctgaaag aataagaatc
     3121 agtgattcag tgaaaagatt ctcaacatct aattatatca gacgattcca acagattgta
     3181 aagaaattgt tattaagcgc aaccaaaaca aactataaaa atataaaaag tgtttctcca
     3241 attgtctctt agtttgtgat aaaacaaagg taaagccaaa tagcaaagag aatgtcaaat
     3301 attactataa taaagggttc tgaaaagttc taatattttt aattttaatt ttgttagaaa
     3361 tagaattagt ttcaaacggt ttatttaaca agatcataat aattgtatta attcattcgc
     3421 ggttatcttc catatttaaa atgattagat attttaagat ctaaagacaa ttattataat
     3481 tgtggtagtc ttttagttat catacccaaa taaacacata aacaatatta taagcataca
     3541 aacctcattt agattttttg attacttgag gaattgcatg atatgctata aaacctatta
     3601 ttacttataa tatgtaatta cataagcata ctcgcttatt gcaacatgag catctagtgt
     3661 tgctttgcag atatttgcat tttttattat gggtctcaca tgttagcagt ctgctagtgc
     3721 cctctaaatc ctcatttata atttgcattt aatcttctct aattcgtatc gcttaagtta
     3781 atgtacaagc aaacttagag aaattagcta aaaaaaatct acaaaaggta attagcacaa
     3841 ttatattatt ctattaaaat atacatgtat aaatatatat atatattcct atatgtattt
     3901 tcaaattcga attacacagg tggaataaac aagaacaaat
//
LOCUS       DATAAS010000100         7227 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4958176, whole genome shotgun sequence.
ACCESSION   DATAAS010000100 DATAAS010000000
VERSION     DATAAS010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7227
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4958176"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..379
                     /locus_tag="VHF08_01550"
     CDS             <1..379
                     /locus_tag="VHF08_01550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methane monooxygenase/ammonia monooxygenase
                     subunit B"
                     /protein_id="HEX2067364.1"
                     /translation="TVTGELQSLVNRPLRAWLSLFSESVNAGNRWEFVARDPPGNVFE
                     IPPQGTIPYEMRAKALEPGVYHVHTQLNIAGVGPGLGPGQTVQVSGEAILKPVPWGNV
                     AYQVILIGAGLGVTFATRPWQVI"
     gene            complement(913..1071)
                     /locus_tag="VHF08_01555"
     CDS             complement(913..1071)
                     /locus_tag="VHF08_01555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067365.1"
                     /translation="MLFAVFLLGVIAFWLRKKGLGGGSAKEKWTQELERYFEREQIGL
                     IPDEKHHW"
     gene            complement(1439..1777)
                     /locus_tag="VHF08_01560"
     CDS             complement(1439..1777)
                     /locus_tag="VHF08_01560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067366.1"
                     /translation="MKNVIDMNKPISLATVTIALLMGVAFAFPAFETAYGQYVSEAPS
                     SVEEQLELAKSKINNAQQSGAYGSGTPMLGTNISETVIMIVVLTAIFGGVAAAFFVKG
                     RAGRKEAATS"
     gene            1861..2310
                     /locus_tag="VHF08_01565"
     CDS             1861..2310
                     /locus_tag="VHF08_01565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEX2067367.1"
                     /translation="MARIHAHTHGKSHSTRPTSKDVPPWLTESQEKVSSLIVGLAKEG
                     ITPSEIGLRLRDEYGIPLAKPVVGKAITDVLTDNDITRDMPEDLEHLVMKALGLQKHL
                     RTHNSDHRNVRSLELIESKIHRLSKYYKRIGKIKKNWKYAAVIAQLE"
     gene            2320..3759
                     /locus_tag="VHF08_01570"
     CDS             2320..3759
                     /locus_tag="VHF08_01570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEX2067368.1"
                     /translation="MSDKEIYQALKAFCDKIEFMVENEKEISIISHLDADGIASGSII
                     SLALARKGAKCVVRTISGMTLNVLEQMRSEDHDFYIITDLGAGMANEFNQALDNRWAI
                     IDHHQIPQQELSIDDNNQILNAWKYGIDGGKEISAGGMAYLVATTLDRKNKNLSPIAI
                     VSALADRQDQGDKKSLLGLNSEIVKTAQSLRLISMDLDLLLTGRETRPIHEALAFTAF
                     PYIEGLTWATESCYALIKNAGIKMSKNGRWRVLSEISQDEKNIILNAIAEYVVNSSKN
                     KEVNIIDNLIGYTYTLINEDQRSLLRDAREFSTMLSACGRIRKSGVGIGICMGDRNDL
                     LNEGEKIVTKYRTTLRNYITSIFAEKWRMIDNGKSVFINGEGLLTEDMLGAISSLLSG
                     SPTLGGRLIFVRTLTNDGFYKFSCRKSLGSTSKSDLGLIMRYCSESVGGSGGGHSLAA
                     GCKIPLAKLEEFLSAVRNAILDAKFTAAS"
     gene            3734..4000
                     /locus_tag="VHF08_01575"
     CDS             3734..4000
                     /locus_tag="VHF08_01575"
                     /inference="COORDINATES: protein motif:HMM:NF011470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex subunit Pcc1"
                     /protein_id="HEX2067369.1"
                     /translation="MPNSQPLLEITAIIELNFSNQSEKEAIMKALMPDNINFPKGLSM
                     DMSSKDNTTICIKFSSCTQIETLINTVDEVLQDISLAKKVITDA"
     gene            3993..5264
                     /gene="serS"
                     /locus_tag="VHF08_01580"
     CDS             3993..5264
                     /gene="serS"
                     /locus_tag="VHF08_01580"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEX2067370.1"
                     /translation="MLDSKLLKQNPEVIIDMLKKRKIEFPINDLISLDKRRREIIVEM
                     QHVKHKKNTLSHSIASKKKEKINSSLEISEMKDIGNRIISLEKEKSIVESQFNLLMRC
                     LPNIIDQSVPIGDNENDNVILQHHGTIKNLDFKPKDHVEIATSLDLVDMERAAKISGA
                     RFYFLKKELVTMNYALILFALDFLSDKGYILTQPPYMIRRNAIEGSIILEDFEQVIYK
                     INEEDLYMIGTSEHALASMHMDEILNGKQLPIKYAGISPCFRKEAGAHGKDMKGIFRV
                     HQFEKVEQFIYSRPEDSCKEHEKMLSITEEFYNKIGIPYRTVLLCSADLGKISAKTYD
                     IEAWMPGQSAYREIVSCSNCTDYQARRLGIRFKDKTNEETRLVHTLNSTLVATERTMV
                     SIMENYQTSNGEVEIPDILQKYMGDIKKIKI"
     gene            complement(5506..6387)
                     /locus_tag="VHF08_01585"
     CDS             complement(5506..6387)
                     /locus_tag="VHF08_01585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX2067371.1"
                     /translation="MDILYDHPLYRPPSEANSMIFQVTLGCSFNKCSFCNMYRTKEYV
                     ERPWEEIKTEIDLAANAYPDTRRVFLADGDALNLSTNRLIQILKYLRSKFANIERISC
                     YAMPKNLLQKKDDELDRLRSAGLGMFYVGVETGNDILLKKVTKGATSKGIIQSCQRAK
                     RHGYILSCMIILGIGGKTYTYEHIDDTARVINEIVPDYLGALTLHLEEEIFDEFMTKF
                     NEPFIPLQDLEILDELERLISNINVSTPVIFRANHASNVYSLGGTFPQDKENLLSLVA
                     GLKNHPEMLKPKILRRF"
     gene            complement(6756..7094)
                     /locus_tag="VHF08_01590"
     CDS             complement(6756..7094)
                     /locus_tag="VHF08_01590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067372.1"
                     /translation="MSMLKRREKRRYLAILHSVHPHDNIREDLIILNSITKRNSELFG
                     HISTELSYIRLIRSEQKNIIIISCLLQHIDNILSTIALIDPPLITIVISGTLKKLRRH
                     LQKILDNAYL"
BASE COUNT         2412 a         1271 c         1332 g         2212 t
ORIGIN      
        1 aacagtaacg ggcgaactac agagtctggt aaatagaccc ctaagagcat ggttatcatt
       61 atttagtgaa tcagttaatg caggaaatag atgggaattt gttgcaagag atccaccagg
      121 aaatgtattt gagattcctc cgcaaggaac tatcccatat gaaatgaggg caaaagcact
      181 tgagcctggt gtataccatg tacacacaca gcttaacatt gcaggtgttg gcccaggtct
      241 cggtcctgga cagactgtac aggtaagtgg agaagcaatc ttaaagccag ttccttgggg
      301 taacgtagcc tatcaagtaa ttctcattgg agcaggcctc ggtgtgacat tcgctacaag
      361 accatggcaa gttatttaga agaataattc ttcctcattt ttatttttca aaaacgattt
      421 taactctata cttccaattc ccaaaggtta tctattctat tataatatct ttaaaactaa
      481 cgatcaaacg ctcattatct ctttattatt ttataataat tgtcgcttac cattcatatc
      541 aagtctttgg ttccaaagca taatttatga ttcagttaaa tctttatatt cataataatc
      601 gtcttcatta caataatagc ttttgttttg atgagcagaa ataggagaat gaactttcag
      661 agaagattta acaactgttc gcaatattca tttgttgttc ttccggagaa agataatgta
      721 ttacaatttt ctggtgatga acattcttgg aagcattcca attgtaacat tctctagaga
      781 ataaaatgta aagtcaattc catttctatg ttatagatag aaaaggataa aaaattaggg
      841 tttatcaggt aaggagaaga aaatacaaag aactttaaga tttctttgtc tttctagaag
      901 atcatttctg atttaccaat ggtgtttttc gtctggaatt agaccgattt gttcacgttc
      961 gaagtatctt tctagctctt gcgtccattt ctcctttgca gaaccaccac caagcccctt
     1021 tttccgtagc cagaatgcga tgacacctaa caggaacacg gcgaacaaca tggtgccgaa
     1081 gatgtagacc attacatcgt agaacagcgg atcatacgcc ggtcctattt gcccaatcag
     1141 actgttaaac ttagtaccta ccattgccat aacgctcata atagcgctca ttatcttaca
     1201 gcagattaaa tctatgatat atacattttg gttcgataat aatctctacc agtggattgc
     1261 ttttggtggc gttctattaa agtgatataa cattctttca tatgatcaat acgcatatga
     1321 tgtcataatt attaatctag aaaaaggcat atcatatcca ttgaagggct tcgagccaaa
     1381 ttctgataat gctgaataaa ccacaaaaaa ggttagaaag gaattctttt aggaggattt
     1441 agcttgttgc tgcttctttt cttcctgctc tgccttttac gaagaaagcc gctgcaacgc
     1501 caccaaatat tgctgtcagg acaactatca tgatcactgt ttcacttatg ttagttccca
     1561 acataggcgt accagaacca taagcgcctg actgttgtgc attattaatt ttacttttcg
     1621 ctaattctaa ctgctcttca acactactag gagcttcact cacgtattgt ccatatgcag
     1681 tctcaaacgc aggaaatgca aatgcaacac ccatcagaag tgctattgtg accgtagcca
     1741 gtgaaattgg cttgttcata tcaattacat ttttcaagtc aattatataa cttttatgtc
     1801 tacatcaaga tatcgaatta agtaacattt agatacgtat taaaattttt catagatgat
     1861 atggcacgaa ttcatgctca tactcatggt aagtctcact ctactcgtcc aacttcaaag
     1921 gatgttcccc cttggctgac agaaagccaa gaaaaggtat cttcattaat agttggactt
     1981 gctaaggaag gcataacgcc aagtgaaata ggattgcgtt tacgtgacga atatggaatc
     2041 cctctcgcta agcctgttgt aggtaaagca ataacagatg tccttacaga caatgacatc
     2101 acaagagata tgccagaaga tctagaacac ttggttatga aagctttggg tctacagaag
     2161 catcttagaa ctcataatag tgatcataga aacgtccgat ctctggaatt aatagaatca
     2221 aaaattcaca gattatctaa atactataag agaataggca agattaagaa aaactggaaa
     2281 tatgccgcag ttattgccca gttagaataa gaatttagca tgagtgataa agaaatctat
     2341 caagctctaa aggctttttg tgacaagatt gaatttatgg ttgaaaatga gaaggaaatt
     2401 agtattatta gtcatttgga tgcggatgga atagcttcag gaagtattat atctttagca
     2461 ttggctagaa aaggcgctaa atgcgttgtt cgtaccatct caggtatgac tttgaatgtt
     2521 ctagagcaaa tgcgctctga agatcatgat ttttacataa ttaccgatct cggtgcaggg
     2581 atggctaatg aatttaacca agctcttgat aacagatggg ccataattga tcaccatcaa
     2641 attcctcaac aagaactatc aattgatgac aataatcaaa tcctaaatgc ttggaaatat
     2701 ggcatagacg gaggtaaaga gatttctgct ggaggaatgg catatttggt tgcaactaca
     2761 cttgatagaa aaaataagaa tctatctcca attgcaattg tttctgcact tgctgacaga
     2821 caagatcagg gagataaaaa atccctttta ggccttaatt ctgaaatagt taagactgct
     2881 cagtcgcttc gactcattag tatggatttg gaccttttgc ttacaggacg tgagactcgg
     2941 ccaatccatg aagcacttgc ctttaccgct tttccataca tcgaaggctt gacgtgggct
     3001 acagaatcct gctatgcact cataaaaaat gcagggataa aaatgagtaa aaatggacga
     3061 tggcgtgtgc tttctgaaat ttctcaagat gagaaaaaca taattttaaa tgcaatagca
     3121 gaatatgtag tcaattcatc gaaaaacaaa gaagtaaata taatcgataa tctgatagga
     3181 tatacataca cactcattaa cgaagatcaa agaagcctac ttcgtgacgc acgcgaattc
     3241 tcgactatgc tgagtgcatg tggacgaatt agaaagtcag gagtgggtat tggaatttgt
     3301 atgggcgata ggaatgatct attaaatgaa ggcgagaaga tagtcacaaa atatagaaca
     3361 accttaagaa actatataac ttctattttt gctgaaaaat ggcgcatgat cgataatggc
     3421 aagtcagttt ttattaacgg agagggactt ttgactgaag acatgctagg agcaatttca
     3481 tctttattga gtgggtctcc aactcttggt ggccgactta tttttgtgag aaccttaact
     3541 aatgacggct tctataaatt ttcttgtaga aaatccctag gaagtacatc aaagtcagat
     3601 ctgggtttaa taatgcgata ttgttcagaa tctgttgggg gaagtggagg cggtcattct
     3661 ttggcggcag gatgtaaaat tccattggcg aaattggaag aatttttatc tgcagttagg
     3721 aacgcaatac tagatgccaa attcacagcc gcttcttgaa ataactgcta tcatagaatt
     3781 aaacttctca aaccaatctg aaaaggaggc aatcatgaag gcattgatgc cagataatat
     3841 taactttcca aaaggcctat ctatggacat gagttcaaaa gataacacta ctatttgtat
     3901 caaattttcc tcctgtactc agatcgagac tttgatcaat actgtagatg aagttttaca
     3961 ggatatttcg cttgcaaaaa aagtgataac tgatgcttga ttcaaaatta ctaaaacaaa
     4021 atccagaagt cataatagat atgcttaaga aaaggaaaat agagtttcca attaacgatc
     4081 taatttccct agacaagaga cgacgtgaaa ttattgtaga aatgcagcat gtcaaacata
     4141 agaagaacac actttcacat tctattgcct ccaagaaaaa agaaaagatt aactcatcat
     4201 tagaaatatc ggaaatgaaa gatataggaa atagaattat cagtcttgag aaagaaaaga
     4261 gcatagtcga atcgcagttt aaccttctca tgcgatgtct tcctaatatt attgatcaat
     4321 ctgttccaat tggagataat gaaaatgaca atgtcatctt acagcatcat ggaacaatca
     4381 agaatttaga cttcaagcct aaggatcatg ttgaaattgc aacttctctg gatctggtcg
     4441 atatggaaag agccgcaaaa atatcaggcg cgagatttta ctttttaaaa aaagaattgg
     4501 taactatgaa ttatgccttg atcctctttg cactagattt tttatctgat aaagggtaca
     4561 tactcactca gcctccatat atgattagaa gaaatgctat cgaagggtct ataatactgg
     4621 aagattttga acaagtgatt tacaagatta atgaagagga cctgtatatg attggaactt
     4681 ctgagcatgc actggcatca atgcatatgg atgaaatttt aaatggtaag cagttaccga
     4741 tcaaatatgc gggtattagt ccttgtttta gaaaagaagc tggtgctcat ggcaaagata
     4801 tgaaaggaat tttcagagtg catcagttcg aaaaagtaga acaattcata tactctcgtc
     4861 cagaagattc atgtaaagaa cacgagaaga tgttatctat aactgaagag ttttataata
     4921 agattggcat tccttaccgg acggtgcttc tatgttcagc agacttgggc aagatttcag
     4981 ccaaaacata tgatatagag gcatggatgc caggacaaag tgcttataga gagatagttt
     5041 catgttcaaa ctgtacggat taccaagctc gtaggcttgg cataagattt aaagacaaga
     5101 caaatgaaga aacaagatta gttcatactc taaatagcac acttgtagcg actgagagaa
     5161 ctatggtgag tattatggaa aactaccaga cctcaaatgg agaagttgaa attccagata
     5221 ttcttcaaaa atacatggga gacattaaga aaatcaagat ataatatttt ggggtttagg
     5281 tagatgaaaa aagacataat cagacggctt taaattcaat acaacatttc ttaagattca
     5341 gttacaatga ctataataca aggataatat taagaattga tctttcacat tatagcattg
     5401 aggatgcacc aataagttac ttaatgatta gactatagta tgtccaaagt agaaatctta
     5461 taggagaaat gttttaaatg aaaataaaat ttgagaattt acaagtcaga accttctcag
     5521 gatcttgggt tttaacattt ccggatggtt cttaagtccc gccactaaag agaggagatt
     5581 ctccttatct tgagggaaag taccacccaa cgaataaaca ttcgatgcat gattagccct
     5641 aaatattact ggtgttgata cattgatatt tgatattaat ctttcaagtt cgtccaatat
     5701 ctccaggtcc tgtaatggga taaacggctc gttaaacttg gtcataaact cgtcaaaaat
     5761 ttcctcttca agatgtaatg ttaatgctcc gagataatca gggacaattt catttattac
     5821 tctagcggta tcatctatat gctcatatgt ataggttttt ccacctatgc ccagaattat
     5881 catgcaggat aaaatatagc cgtgtctttt tgcccgttga cagctctgaa taattccttt
     5941 gcttgtcgcg ccttttgtca ccttctttaa aagaatatca tttccggtct caactcctac
     6001 atagaacatc cctaatccag cagatctaag tctgtctaat tcatcatcct tcttctgcaa
     6061 tagattcttt ggcattgcat agcatgatat tctttctata tttgcaaact tgctccgtaa
     6121 atatttcaga atttgaatca atctattggt ggataggttt agcgcatctc catctgcaag
     6181 aaacaccctt cgagtatcag gatatgcatt tgcggctaga tcaatttctg tttttatctc
     6241 ttcccacggt ctttcgacat attcctttgt acgatacatg ttacaaaagg agcatttatt
     6301 aaaggagcaa cctaatgtaa cctgaaatat cattgagtta gcctctgaag gcggtctata
     6361 aagaggatgg tcatacagaa tatccatttt aaatatacac cctgttaaga gaacatatca
     6421 catttaactc atactattta catgagggat gtaatgatat ttgataaaaa tctctaaaga
     6481 atttgggtcg gttcgtcgcg agatcttcat gctttgactc agtctggagc agcgatatct
     6541 tacctcatcc ccgtatatag atataagaac caccattaaa gtgtatttga gaacatcatc
     6601 tcttaggaat ttgcccgatc atagagtgcc tatgaaacat tttcgctgtt gacaggatta
     6661 agccatcctc aagaaggata agaatattac agttgttaag atttccctta atcaacagcc
     6721 attcgatttg tctatcgtag ataatgataa tataattaga gataggcatt gtcaagtatt
     6781 ttttgaagat gtcttcgtag cttctttaac gtacctgaaa taacaatcgt gataagtggc
     6841 ggatcgatta aagctattgt tgacaaaata ttatcaatat gttgtagaag acaacttatg
     6901 ataattatat ttttttgttc tgatcgaatc aatctaatat aagataactc agttgaaata
     6961 tgaccgaaaa gttcggaatt tctttttgtg atagaattaa gtataataag atcttctcta
     7021 atgttatcat gaggatggac actatgcaat atagccaaat atcgacgttt ctccctacgt
     7081 ttaagcattg acaaacacca tcttttgata ttttgtctct atccactctg cgagatccca
     7141 ccaatattgt tctggtttta tatcacaaat ctttaatata gagtcgaatg agcgacccga
     7201 aaccatttcc aactcagaat tcgcacc
//
LOCUS       DATAAS010000101         3622 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2795934, whole genome shotgun sequence.
ACCESSION   DATAAS010000101 DATAAS010000000
VERSION     DATAAS010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3622
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2795934"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1537..2166)
                     /locus_tag="VHF08_01595"
     CDS             complement(1537..2166)
                     /locus_tag="VHF08_01595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067373.1"
                     /translation="MTTVREDQEPEARNNTNTSLTIEDVYNLLLTEIQIPTLQSIPLD
                     TYQNIATMLGNIKGQVYDGIDAKIRDRMVEMISKSAQLLLECRHQKLMEYQGEILSST
                     SVETAVDYSKLTDEEKYILDGEKESEKRRNAILAATINGRPKVMESISTKIRSKQIVV
                     RFIKSMEQFVGVDMTKYGPFQEEDVAVLPFENARSFIEKGVAIEIDIAQ"
     gene            2515..3021
                     /locus_tag="VHF08_01600"
     CDS             2515..3021
                     /locus_tag="VHF08_01600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067374.1"
                     /translation="MSSEENDAQKKIANEKKTEEITSRNPKDVDDSNIIVVSPSDTRS
                     TIYEDDKSSSEVESLSTKAKETGLSLRQLISAFGRKAKAATEVTSKEIKSKTIDVATS
                     DVKDIQTLGANVDSIIAAFEDTMDEIHKEDYDEQEKLLAGYKKYIESQVKVIDTRLKL
                     AKRLKRGA"
BASE COUNT         1291 a          517 c          549 g         1265 t
ORIGIN      
        1 ggcaagagaa aatataactg aggaaactaa aagagtaatc ataagaaaga tgacagacaa
       61 gagaggttag tgatagaact tcaggaagat gaagatatat tgattgcttg gagataagag
      121 acctgaaatt acctaaaagc ataagcggtc tatcattttt ataaaatact ttacaatatt
      181 gatagaagaa aaggttgcct gcacatttta tgttattata attaccatct gtttaaatgc
      241 atataaagat gcattaaatt ttcagtgaat tagtgtcctt ttaagcgata gagtatgtat
      301 aacaaagttt tcaaaggaat atgttgaact tactaataca ttagtttgta tatcaaaaat
      361 agagatacaa taccagtaat aataaatcct attcctgcat aaattaataa tcgttttctt
      421 tgtttagctt gcatctctat aataaaagaa gcaacagtaa ttactgtttt tcttattcaa
      481 atccaaatca atgcatatga aatataatat atgtagaaat gccatttagt attcaatctt
      541 tataatcatt ctatttgaat tttatcattg gttaggcagg cactatttta tcttatcttt
      601 atagaactgg taataatcgt actattatta tagaaaataa actgcagtgc attaacgttt
      661 cttactaaca tgactttaga caatacaata attagaaact atggaataat aatctacaga
      721 gtagtgatga aatgaatcat attcaaataa taatagtaat aatgcaataa tggtgtctgc
      781 taataatgcg atattcaatc aatactcaat aacaaattat gtatagttaa atttcttttt
      841 ctcagggtga gatcacgaac tattgcagat gccaaaccag aactactaca gcttacatca
      901 cttctataca atacaatatt caagatgaac ttatcagaaa attacacttt aaagtataaa
      961 aagaaaatac tgataatatg cttgatcata ttactgacta aatagagata gaggagatac
     1021 ttcaagcaat ttcagattta ttgcaatagc tgtagttctt tttcattatt attttaatac
     1081 agtctttccg tgtaatgctt ttttgtataa tcataagaca ctttggttta acagaaaaat
     1141 ccaatcatgt tggtttatgt agtaacttta tttttacgtg atgccttcca taattttaat
     1201 ttctgcataa tgcgatttat catagattta aggttcatat attaacattt catcttttca
     1261 tttttaaagg ctttcgatca tgatataaca aatagctata gttatatgga ttactactat
     1321 tggtgaagta ctttaaaatt cttggatgac aaaaagcaaa cagaaggaaa gtaatataga
     1381 agtagtgcta gtcgttatta ttaatattga ataacaaatt tctctcttat ttgtgcctat
     1441 ttggcttcaa tagctaatat atctttagat taatttacat ttaattaatt actgactttt
     1501 ccttttaatt taccgaaaac ttttaacatc attttattat tgggcaatat ctatttctat
     1561 tgccactcct ttctctatga aagatcgagc attttcaaat ggcagcactg caacgtcttc
     1621 ctcctggaat ggtccatact ttgtcatatc cactcccaca aactgttcca tagatttgat
     1681 aaatctgaca acaatttgtt tggagcgaat tttggtcgaa attgattcca taactttagg
     1741 tctcccatta atagttgcgg caaggatagc atttcttctt ttctcagact ctttttctcc
     1801 atccaaaata tatttttcct catctgtaag ttttgaataa tccactgctg tttctactga
     1861 tgttgaagat aatatttcgc cttggtattc cattaacttt tggtgccgac attcgagcaa
     1921 tagttgggcg gatttggata tcatctcaac cattctatct ctaatttttg catctattcc
     1981 atcatagact tgccctttta tattaccaag catagtagca atattttgat aagtgtcaag
     2041 aggtatagat tgcaatgtag gaatttggat ttctgtcaat aataaattgt atacatcctc
     2101 aattgttaat gatgtgttgg tattgtttct tgcttctggt tcttgatctt ctcttactgt
     2161 tgtcatgatt tgtgatttat cctccttcct ttttcatttt cataacctac ttgataaaac
     2221 ttaattaaag gcacatctct attatagaga taacttagtt gccttataaa gtaattgatg
     2281 gaaagataga aacattaaca tttacaaaag atgctgtcca actatttctt ggttgaaagc
     2341 attctagtgc atactaatct gtgatatttt gagcggcagc ttatctttgt agtccaaaca
     2401 aataaaaaat acatttagtc atagtaatta caatattaaa atatggttat tagagaaagg
     2461 gactataaga ataatttgca tataccttat aaactttaga acgtattata gattgtgagc
     2521 agcgaagaga acgacgctca aaagaaaatt gcaaatgaaa aaaaaacaga agaaataact
     2581 agtagaaatc cgaaggatgt tgatgacagt aacattatag tagtcagtcc atctgacact
     2641 agatcgacta tatatgaaga tgataagtca tcgagcgaag tagaatcact ttctactaaa
     2701 gccaaggaaa ctggattgtc tctcaggcaa cttatttcag catttggtag gaaagctaaa
     2761 gctgcgacag aagtgacctc caaagaaatt aagtcaaaaa ctattgacgt tgctacgtca
     2821 gatgtaaaag atattcaaac tttgggagca aatgtagata gtataatcgc agcattcgag
     2881 gatactatgg atgaaattca taaagaagat tatgatgagc aagaaaagtt gttagcaggt
     2941 tacaaaaaat atatagaatc acaggtcaaa gttattgata caagattaaa gttggcaaaa
     3001 agacttaaac ggggagcttg atctcaataa tgcgttatta agatctctgc ttaagctaat
     3061 ggtgataaat aggataatta ttttattgac agcatcctat atcatttctc caattttatt
     3121 taaatgaaat tgacatgaaa atacatgaaa aattgatact ttcattagga tattattaag
     3181 tattgtttaa ttgttgcacc acattatttt taaattcaat aattgtaaat atatgagtat
     3241 atattaattt tcagagaatt tctataatcc gcaagaccca gcagtaaaaa tgctaaatga
     3301 tgatttggct ttttggcttg atcctatttc tttattacaa ttacttatac aataaaagtt
     3361 gaaaagtgca tgacgactaa tccgttgcta aaaaagatat ttgtgctaaa gaaatacaat
     3421 tatgcagact tttgctatta gattaactag aagacggaga ctagggtaga tattaaataa
     3481 ttatataatg tgctgctatc gatatcacaa taaagagcat tatttcaatg aaccgatagt
     3541 catgatttat ttcttttata ctaaacatta ttattcatat atggtatttt acgattgaat
     3601 atcaagcata tgacaaaaat aa
//
LOCUS       DATAAS010000102         6291 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1216734, whole genome shotgun sequence.
ACCESSION   DATAAS010000102 DATAAS010000000
VERSION     DATAAS010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6291)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6291)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6291
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1216734"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..247
                     /locus_tag="VHF08_01605"
     CDS             <1..247
                     /locus_tag="VHF08_01605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067375.1"
                     /translation="ARRSTSYIDGLEHLFFIEALKQKYELGILSTIPQYYLRTLLGFT
                     TYNGTKDILQDLLIKYGKNNKVLAVSDGDLILLKTKS"
     gene            634..1131
                     /gene="rimI"
                     /locus_tag="VHF08_01610"
     CDS             634..1131
                     /gene="rimI"
                     /locus_tag="VHF08_01610"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020265495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008999 -
                     peptide-alanine-alpha-N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HEX2067376.1"
                     /translation="MQTALRRVGDYVIRHCEEKDLVSVIDINMITLPEHYSDYFFESI
                     LRELPEAFIIAEINDKIIGYIMCKIEFGFSNFRKLGFVKKGHVVSVAVLPEHRGKGLG
                     KALMLEGINGVMHRKSDEIYLEVRKSNESAIKMYQKIGFQIKSKLRAYYRDGEDAYLM
                     ALEFG"
     gene            1170..1388
                     /locus_tag="VHF08_01615"
     CDS             1170..1388
                     /locus_tag="VHF08_01615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067377.1"
                     /translation="MKNKRRGSRIAGYILLVASILAFIIYAYLLLGTDLGILILQLTV
                     LAAIAALLAVLAWIGYTMATAPTHQEDR"
     gene            complement(1393..2238)
                     /locus_tag="VHF08_01620"
     CDS             complement(1393..2238)
                     /locus_tag="VHF08_01620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase family
                     protein"
                     /protein_id="HEX2067378.1"
                     /translation="MAYILKKILSGVLTHDEISQVCSAFDMIGSIVIVKIPDPLKLKK
                     QIIGETILHCIKPAKSVFAQTSAVQGDYRIRSLEFIAGDYNTITEYREHGCKFRVDIK
                     NTYFSPRLSTERLRIAKLTSENEVIVNMFAGVGTFSIIIAKMNKTCKIYNIDCNPFAN
                     EMAIINAKLNRVQNRVLPICGDAKDVIYDQIRGQCDRVLMPLPERSSEFVDSAVLALK
                     DRRGVIHFFVHVKADSKNAAIEKADSDIQNVFNKYRHEIVHTRIVREVGPRVYQIVSD
                     ICISP"
     gene            complement(2242..3294)
                     /locus_tag="VHF08_01625"
                     /pseudo
     CDS             complement(2242..3294)
                     /locus_tag="VHF08_01625"
                     /inference="COORDINATES: protein motif:HMM:NF009945.0"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
     gene            complement(3341..4057)
                     /locus_tag="VHF08_01630"
     CDS             complement(3341..4057)
                     /locus_tag="VHF08_01630"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2067379.1"
                     /translation="MGNSTESTHRVAVLDQELCQPRKCGLECIIYCPVNKTGGECIVQ
                     RPEDGKALISEDLCTGCGICIKKCPFDAIVIVNLAKELSEDKIHQYGVNSFRLYRLPI
                     PKKGSVVGLLGRNGIGKSTIVNILSGNIHPNLGNYEGNIEWDDVLKHFQGTELKSHFE
                     RIANGDLRASIKPQLVYLIPKAFKGSAKELLKKYDERKVTDSLVEELGLNNSLDRNVN
                     ELSGGELQRLAVAVASAKRC"
     gene            4229..5056
                     /locus_tag="VHF08_01635"
     CDS             4229..5056
                     /locus_tag="VHF08_01635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067380.1"
                     /translation="MVDNLDHRNLTLSSKTTYLRTHYLDIIKMPHFFTRAYHSQSIFL
                     ITIVTSTILLLSSTGILFSSAFTLQTPGTQNEEQALEVPGNISSNIDTKDTALNKTGT
                     DLPILEQLSDKGNYLIQVRWGQDPSLLAASGFDMEIVFLNASESEATPGSFPIKETNV
                     TGDSFVGSGGYTDPSIVQRMVPIESYDITVYSDNGEQLWKKANQPVQAGRAYERITFE
                     NPYKGGITIQISNIKAAGNMGGTIGGPLSGPDETNPTDDRAETDSINFTATVVEERS"
     gene            5788..5907
                     /gene="rrf"
                     /locus_tag="VHF08_01640"
     rRNA            5788..5907
                     /gene="rrf"
                     /locus_tag="VHF08_01640"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT         1980 a         1148 c         1048 g         2115 t
ORIGIN      
        1 ggcaagaaga agtacctcat acatagacgg tttagaacac ctcttcttca ttgaggcgtt
       61 aaaacagaaa tatgaacttg gtatcttgtc aacaataccg caatattatc ttagaacatt
      121 gcttggtttt acaacctata acggtacgaa agatattttg caagatttat taataaagta
      181 tggaaaaaat aataaagttc tagcagtttc agatggtgac ctaatattat taaagactaa
      241 atcgtagcga gatatatatg tatatactta gtatatatat acgggatata gttttgttat
      301 catagggatt cgttcatttc atctttgttc aataaataaa aattctatca tggacaacat
      361 cttaatgaat tgggtgtcat ttttaatatg tgatatgatt taaccaagta ggagatatat
      421 atgtaacaat aaacaatgaa tactttcgaa ttaaagttta gtatccataa tagatcataa
      481 tgtaatttct tattgaatta gataataaag gtgaatgaca tagtcaataa agattatccg
      541 aatctataac acattattct cactttttat aacaaaaatt cacaatgaac tgtttgataa
      601 gattaaataa tttgttctgt catattctac taattgcaaa ctgcactgcg aagagtaggt
      661 gattatgtta ttaggcactg cgaagagaaa gatcttgtat cagttattga cattaatatg
      721 attactcttc cagaacatta ttctgactac ttttttgaat ctattttaag agaattacct
      781 gaggcattta ttattgcgga aattaatgac aagatcatag gctatattat gtgtaaaatt
      841 gaatttggat tttctaattt tagaaaacta ggatttgtaa agaaaggtca tgtggtttca
      901 gttgccgtat taccagagca tcgaggcaaa ggcctcggga aggctttgat gcttgagggg
      961 attaatggtg tcatgcatcg aaaaagtgac gaaatttacc tagaggttag aaagagtaat
     1021 gaatcagcga tcaaaatgta ccaaaagatt ggctttcaaa taaaatctaa attacgtgca
     1081 tattatagag atggagaaga tgcgtatctc atggctttag aatttggcta aagacatcca
     1141 ataaatatac ctcagaaatc tatgctccta tgaaaaataa aagaagaggt agcaggattg
     1201 caggctatat tctcttagtt gcctctatcc ttgcatttat tatttacgct taccttttac
     1261 ttggcactga tttaggcata ttaattctac aactaaccgt tcttgccgcg attgctgctt
     1321 tgcttgcagt cttggcttgg ataggataca cgatggcaac ggccccgaca catcaagaag
     1381 atcgctgata tcttatggac ttatacagat atcagatact atctgataga ccctaggacc
     1441 cacttctcta actattcttg tatgaacaat ctcatgtcga tatttattga atacattttg
     1501 tatatcagag tctgcctttt ctatggctgc attcttagag tcagccttta cgtgtacaaa
     1561 aaaatgaata actcctcttc tgtcttttaa tgccaatact gcagagtcga caaattcact
     1621 tgatcgttct ggcaatggca tcagtactct atcacattga cctcggattt gatcataaat
     1681 aacatctttc gcatctccgc aaatgggcaa caccctattt tgtaccctat tcagtttagc
     1741 attgataata gccatctcat tggcaaaagg attacaatct atgttgtaaa ttttacatgt
     1801 cttgttcatc ttagcaatta taatggaaaa tgttccgact ccagcaaaca tatttacaat
     1861 aacttcgttt tcagaggtga gctttgctat tcgcaatctt tcagtcgaca acctaggaga
     1921 aaaatatgta ttttttatat ccactcgaaa cttacatcca tgttctctat attctgttat
     1981 tgtattataa tcaccggcaa taaattccag actacggatt cgataatctc cttgaactgc
     2041 agaagtttgt gcaaaaacag attttgccgg cttgatgcaa tgaagtattg tctctcctat
     2101 tatttgcttt tttaacttca gaggatcagg aatctttact attacaatac tgcctatcat
     2161 atcaaaggcc gagcatactt gggatatctc gtcatgtgtt aataccccac tcaaaatttt
     2221 tttaagaata taagccatag gttacgtaga ggatttcttt acaaaataat aatcgccagt
     2281 acttttttgt gctctgtcaa gtctacctcc ttctttatta agccggggtc tgccagtaat
     2341 ttcatctctt ctatatgtta tagccaaaga tttcaagaaa tggttcattc cattttcttt
     2401 gctcattgga ctactagtca ttccttttat agatggaata ccttcgaaaa tgattagagt
     2461 atctgcgact atatctatta gctgcatatc atgatctatt attactgctg acttaccttg
     2521 tgatctaacg aagcgttgaa ggaattttgc caatgtaatt ctatcttcta catctaggaa
     2581 cgcagatggt tcatccaatg cataaatatc agcctgtctc atcaatgacg ctgctacagc
     2641 taccttttgc aattcccctc cactaagatt tttgacattt ttgtcgtata atttctttat
     2701 tcccatcgga ctcaagattt gctcttcgac tggagaacct tctattgcat tttgatatgc
     2761 agtatacaat aatgagcgca catcgccatc ataatcttgg ttaagatatt gaggtttata
     2821 tgaaattctt gcaccaatat caatagtgcc agagtctggt ttgtccactc ctgctagcat
     2881 tctcataaat gttgtcttac ccaatgcgtt ggcgccgatt attccgacga tttctccttg
     2941 ccttatctta ccagcagaaa ttttgagatt aaatgacaga aaagactttg cgatatccga
     3001 ataatgagcg acaggaatgt ccataatcat atcatcaatt gaacttctta tatccagcct
     3061 gaatgatttc tctctaaatc gcacattctc agtagggaga aacccttcaa gaaagttatt
     3121 gataccaagt tttgtacttt gaactttgga gacaataccg tatgcgcctg gctcaccata
     3181 tagaatatga atataatctg agagataatc taataatgtc atatcatgct caactaccat
     3241 aacactttta ccctgtcgcg agagattttg aatcacccga gagacagcaa gtctttggta
     3301 gacatcattg tatgaagaag gttcgtcaaa gaagtaataa tcagcatctt tttgccgatg
     3361 ctaccgcaac tgccaatctt tgcaattcgc ctccgctcag ttcgttaaca tttcggtcaa
     3421 gagaattatt caatccaagt tcttctacca aagaatctgt cactttacgc tcgtcatatt
     3481 tttttaatag ctcttttgca cttcccttaa atgcttttgg tattagataa actaattgag
     3541 gtttgataga ggcgcgcagg tcgccattag cgattctctc aaaatgtgat tttaattcgg
     3601 ttccttgaaa gtgcttgagt acatcatccc actcaatatt tccttcataa tttcccaagt
     3661 tgggatgaat atttcctgac aatatattga ctattgttga cttacctatt ccatttcttc
     3721 cgagcaagcc cacgacagat cctttcttgg gtattggaag acgatatagt ctaaatgaat
     3781 tgacgccata ttgatgaatt ttatcttcac ttaattcctt tgcgaggtta acaataacta
     3841 tggcgtcaaa aggacatttc tttatacata taccgcagcc agtacaaagg tcttctgaaa
     3901 ttaaggcctt tccatcctca ggacgctgta ctatacattc tccacctgtc ttatttactg
     3961 gacagtatat gatacattct aatccacatt ttcttggctg gcataattct tggtctagaa
     4021 cagccactct atgtgttgac tctgttgaat ttcccaatgt aatatgacta atttttgcaa
     4081 taatatatta taatccttgt gcaagaaaca gaagatattt cccgtaaagc atacaaaaag
     4141 gctatttatt tctgccgacg tattgttaga tgtattttgc tatacaagat acctcctact
     4201 ttatatttta ttttgaccat tatcttttat ggtagataat cttgatcata gaaatctaac
     4261 attatcctca aaaacaactt atctgagaac tcactacctc gacatcatta aaatgcctca
     4321 tttttttaca agagcatatc attctcaatc aatttttcta ataaccattg tcacatcaac
     4381 cattcttctt cttagttcga caggtatatt attttcatca gcatttactc tacagactcc
     4441 tggaacacaa aatgaagagc aagcattaga agtaccaggt aatatcagta gtaatatcga
     4501 tactaaggat acggcattaa ataaaacagg tacagatctg ccaattttag agcaattatc
     4561 tgataagggg aattatttaa tacaggtaag atgggggcag gatccctctc tacttgctgc
     4621 aagtggattt gatatggaga tagtatttct taatgcaagc gagtcagaag caactccagg
     4681 atcatttcca ataaaggaga caaacgtaac aggagattca tttgttggtt caggcggtta
     4741 tacagatcca tctattgtac aaagaatggt gccaattgaa agttacgaca taaccgtata
     4801 ttctgataat ggtgaacagt tatggaaaaa ggcaaaccaa ccagttcaag caggaagagc
     4861 atatgaaaga ataacatttg aaaaccccta taaaggtgga attactatcc agatcagtaa
     4921 tatcaaggct gctggtaaca tgggtggaac gattggaggt ccattatctg gtccagatga
     4981 aactaatcca actgatgata gagcggaaac agattcgata aattttactg cgacagtcgt
     5041 agaggaaaga tcttgaaatc cttccaagta tctgttttcc aagtctggca aactagatat
     5101 agatgaaaaa taacattatg attcaatgaa gaaaacatag acattttctc tttatactaa
     5161 aaagccctta gcgcttgtac agctccattg actgagctac tagcaattca tacggatggg
     5221 tcggcttcta attatttagt cgtgcgttat cgttccatta tcatgagaaa tacaaatgac
     5281 ggcttctaga caaaaatata tattgtaagc gttaatgtat tacatgtacc ttaggcaata
     5341 ggctgcctca atatggcatc tcttaataaa tggctccaat tcatataaga atttcatgaa
     5401 cttatcttaa acgatacaat caatatagac attcaaaaat ttatgtctga tagttataaa
     5461 ctcttggcta atgtgatgtt tacttggatc tcatacgcaa atataaagga catttttttc
     5521 atgacagtcg agaatagaat attagtttga ttgcgtaatg tattttttat atatatatat
     5581 atatataaaa gtagacaaat atagacattc tgtctgataa tacatattat tttggttttc
     5641 attaaatata tcaagctttt cccacaattc gaaacagcag ctttcttaaa actttgaaat
     5701 tctctctgcg gatctgtctc acgattgtct attacattaa ttttatagat ggtaaaagat
     5761 taaattaagc atttgagtag ttgagaataa gccggccata gcggcagggc gcgacccggt
     5821 cccattccga acccggaagt caaacctgtc gtcgctgctg taatactgac ctgcgtgagc
     5881 ggttggaaaa cagcagtgct ggcattatat ctagttaata gagagtaaac atattctgtg
     5941 ctgaaaattt tctattgttt ctattcgcag agatatacat tctgtatgtt gtatgttgcc
     6001 ttgcctcatt ttcatatgtc actacaaaag acttgtacgc tctatttagt gtaatataat
     6061 ccctattatt tatccatgtg atacgccagc tttgagcttt agtacatata gtttgatatt
     6121 aattaattta ttttgccttt tttaactata cgcttttatt attcttcaag gaacaaaatt
     6181 atcctcacct aaatgtatct gtttcagtaa tctcttaata tttagcccta ttcggtcaat
     6241 gactggatat attgatacta gtccattagg ttcccatatg tgagtttcaa t
//
LOCUS       DATAAS010000103         4787 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3883474, whole genome shotgun sequence.
ACCESSION   DATAAS010000103 DATAAS010000000
VERSION     DATAAS010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4787)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4787)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4787
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3883474"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..191
                     /locus_tag="VHF08_01645"
     CDS             <1..191
                     /locus_tag="VHF08_01645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067381.1"
                     /translation="MEAGYNPTKEETNDQARYPRRSFVKSGYIMILKPFDVKKSVTMN
                     TIADKMVQKRNKQKSLHR"
     gene            319..642
                     /locus_tag="VHF08_01650"
     CDS             319..642
                     /locus_tag="VHF08_01650"
                     /inference="COORDINATES: protein motif:HMM:NF016308.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gar1/Naf1 family protein"
                     /protein_id="HEX2067382.1"
                     /translation="MNELGEVMHLSKSGRLIVRLQKDGKQIKIGQLLVDANGKRIGKV
                     IEVIGPVNAPYASVAPFTDRIKKIIGTNVFNGGVLAKRRDFRSHVRKQQKGFRRYNNL
                     GENQQ"
     gene            639..1718
                     /locus_tag="VHF08_01655"
     CDS             639..1718
                     /locus_tag="VHF08_01655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HEX2067383.1"
                     /translation="MTSTEYYTQCPECHSGLIQDYSKGEYICQKCGYVVMEQIDDYGP
                     ESHATDHDEKMKTIRASGSTSYSLHDYGLRTEIGFTSKDYSGRSIDHQMAEQMNNMRR
                     WHSRIRVASTKERRLSNVLSKINEICSVMSLPKTLVETAAMLYRNYENKSEAKGKSIA
                     CIAAATIYLACKRFSVIRSLEEIVKSAGITKQHASSIKLAAKYYRIMVMEMGVFTEEQ
                     TSATNNNISSSSSSTTSSFSSTFSSPSVIQSKPIPVTLAIDQYISKLANTAKIDIKVE
                     RLAIDIAHKTKDSLLGDGKAPNGLAAAYIYLAAVLLGFNLLQMDISSLAGITEVTIRN
                     RCKDILTNFKFVVNVKPSMMISERG"
     gene            complement(1924..3681)
                     /locus_tag="VHF08_01660"
     CDS             complement(1924..3681)
                     /locus_tag="VHF08_01660"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HEX2067384.1"
                     /translation="MDFTLIAETFEKMETTSSRLALTDHLVSLLKITPVELIDKVIYL
                     IQGKLYPDYEGIELGLAEKMAIRALAYSAGVEVSIIEGIYRRTGDIGAAAEEVMKTKN
                     QMTLFSEKMTVERVYYTLDRIARTTGPGSQEIKMRLVSNLLNDATYREAKYIMKFITE
                     SLRLGIADHTIMDALALAFTGNKMYRHILEKAYNVSSDLGIVARLLATKGLETVKSLQ
                     ITLFKPIRPMLAERVRSSKECIEKMNGIAAAEYKLDGERIQVHKGKGKVELFSRRLEK
                     ITNHYPDVTEAIKSLTLSEAIFEAEVVPINPLTDEYLPFQELMHRRRKYEIRQAVENY
                     PISLNFFDVLYIDGQDTTSLPYVERRKIIEKIFHMDKKDRIRIVPQTIVKNIDEIERF
                     MALAIENGCEGLMLKQISSNYRAGAREFAWIKLKREYRSDLADTIDLVIVGALFGRGR
                     RVGKYGALLLASYDPGSDIFRSVCKVGTGFTDEHLEQFYRNLEDHIILHKHPRVDSGI
                     DMDVWFEPKLVIDVIASEITLSPLYTAAMDRMRKGYGLALRFPKFTGKIRYDKNPKDS
                     TNVEELISMYKAQKRIKNE"
     gene            4017..4349
                     /locus_tag="VHF08_01665"
     CDS             4017..4349
                     /locus_tag="VHF08_01665"
                     /inference="COORDINATES: protein motif:HMM:NF015268.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067385.1"
                     /translation="MGGNKQKTSVGSSDKANTNTQVGDTKSSKKEDSKKIGSKQQQRQ
                     KLSVFVEEPLGLKLLQSMKAITIQSYARSAGVKISVANAFIKSAESKGIVRNVGGYSG
                     HKVYELVK"
     gene            complement(4398..>4787)
                     /locus_tag="VHF08_01670"
     CDS             complement(4398..>4787)
                     /locus_tag="VHF08_01670"
                     /inference="COORDINATES: protein motif:HMM:NF016050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclophilin-like fold protein"
                     /protein_id="HEX2067386.1"
                     /translation="VDKIQTAGSVSRIPMTIQIVDKGIASCELIRHLSPLSVRTILSY
                     LPLQDRIHKFSESIIYIQTRLAIGAEKQKTQFKRGDIAFMTSNSSICIFIKDSVIKPM
                     NPIGIVKSNLEIIESTHSGDIMILKKM"
BASE COUNT         1580 a          843 c          833 g         1531 t
ORIGIN      
        1 caatggaggc tggatataat ccaacaaaag aagaaacaaa cgaccaggcc aggtatccac
       61 ggagatcctt tgtaaaatca ggttatatta tgattctgaa accttttgat gtgaagaaat
      121 ctgtaaccat gaacacaatt gcagacaaaa tggtgcaaaa gagaaataaa caaaaatccc
      181 ttcatagata gaatgtaaaa atacaatttt atatcccaga gatcgtatct gtatttaata
      241 catattttgt ttatcaataa acttaattat tcttgacaga acagaatgat aataagtaaa
      301 actttagagt gattgaaatt gaacgaatta ggggaggtta tgcatttatc aaaaagcgga
      361 aggcttattg tcaggcttca aaaagacggt aaacaaatta aaattggaca actactagtc
      421 gatgctaacg gaaaacgcat aggcaaagta attgaagtaa ttggtcctgt aaatgcgcct
      481 tacgcatcgg tagcaccgtt tactgacaga ataaaaaaaa ttattggcac taatgtattt
      541 aatggaggag ttttggctaa gagaagagat tttcgatccc atgtacgcaa gcaacagaaa
      601 ggctttcgac gttataataa tctaggagag aatcagcaat gacttcaaca gagtactata
      661 cgcagtgtcc agaatgtcac tcaggactaa ttcaagatta tagcaagggt gaatacatct
      721 gccaaaaatg tggctatgta gtgatggaac agattgacga ctatgggcca gaatcccatg
      781 caactgacca cgatgagaaa atgaaaacga tccgtgccag cggatctaca agctactcat
      841 tacatgatta tggtttaaga actgaaatag gttttacctc taaagattac agtggaaggt
      901 ccattgatca tcaaatggca gagcagatga ataacatgcg aagatggcat tcaagaatca
      961 gagttgcatc tactaaagaa agaaggctat caaatgttct atctaaaatt aatgagattt
     1021 gctctgtaat gtcactcccc aagacattgg tagaaacagc agcaatgcta tacagaaatt
     1081 atgaaaataa aagtgaagca aagggaaaat ctattgcatg tattgcagcc gcgacaattt
     1141 accttgcctg taagagattt tctgttataa gatcattaga agaaattgtt aaatcagccg
     1201 gtataacaaa acaacatgca tctagcataa aacttgcagc caaatactat agaataatgg
     1261 tcatggagat gggtgttttt acagaagaac agacatctgc taccaataat aatatatcct
     1321 cttcatcttc ctccacgacc tcatctttta gctctacttt ttcttcgccc tcagttatac
     1381 aatcaaaacc aattcctgtg actcttgcaa ttgatcagta catatctaaa cttgcaaata
     1441 cggcaaaaat tgacataaaa gttgagagac tagcaattga tatcgcacat aaaacaaagg
     1501 atagtcttct aggagatggt aaggctccta atggccttgc cgcagcatac atatatcttg
     1561 ctgcagtgtt gctcggcttt aatcttctgc aaatggatat atctagtcta gcaggcatta
     1621 cagaagttac aataaggaac agatgtaaag atatacttac aaatttcaaa tttgtagtaa
     1681 atgtgaaacc atcgatgatg atatcagaaa gaggttaaaa tcgattcgta taggatgtaa
     1741 atgttggtga tacacataat tatgtagcca tattatcagc acatacatat atgcccagtt
     1801 ctcagatgta tctctccaac tgatctgatg ttcatcgata tacttctaat tagagaatgt
     1861 aaaacattag ttatctgaaa cagtcggtaa aattatgtgt tatgattaga gggtatatta
     1921 tttctattcg ttttttattc tcttctgtgc tttatacatt gagattaatt cttctacatt
     1981 agttgaatcc ttgggattct tatcatacct tattttgcca gtgaatttgg ggaatcgtag
     2041 agccaatcca taaccttttc tcatccgatc cattgcagct gtatacaatg gacttaatgt
     2101 tatttcagag gcaattacat ctattactaa tttgggctca aaccatacat ccatatctat
     2161 tccactgtcg acgcgaggat gtttatgtaa tattatatga tcctccaagt tcctgtagaa
     2221 ttgttcaaga tgttcatcag taaatccagt tccaacttta catacacttc taaatatatc
     2281 tgaaccggga tcgtatgagg caagtaaaag agcaccgtat tttccaactc tgcgacccct
     2341 tccgaagaga gctcctacta tcacaagatc gatggtatct gcgagatcac tacgatactc
     2401 acgttttagc tttatccatg caaattctct agctccggca cggtaattac ttgaaatttg
     2461 cttcaacatt aggccttcac atccgttttc tatggctaat gccataaacc tctcaatttc
     2521 gtcaatattt tttacaatag tttgaggaac aattctaatc ctatcttttt tatccatatg
     2581 gaatattttc tcaattattt tacgtctttc aacgtatggc aacgatgttg tatcctgtcc
     2641 atcaatgtat aatacatcaa agaaattcag gcttataggg taattctcca ctgcctgcct
     2701 tatctcatat tttctacgcc gatgcattaa ctcctgaaaa ggaaggtatt cgtcagttaa
     2761 tggattgatt ggtacaactt ctgcttcaaa aatcgcttca cttagcgtaa gagatttgat
     2821 agcctccgtg acatcaggat aatgatttgt aattttttct agtcttcttg aaaataactc
     2881 tacttttcct ttacctttgt gtacttgtat tctctctccg tctaatttgt attctgctgc
     2941 agctattccg ttcatttttt ctatacattc ttttgaacta cgtacacgtt cagccagcat
     3001 cggcctgatt ggtttgaata atgttatttg caaggatttt acagtttcaa gaccttttgt
     3061 agctaaaagt ctggctacta ttccgagatc gcttgatacg ttgtaagctt tttctaaaat
     3121 atgccggtac attttatttc ctgtaaacgc caatgctaaa gcatccatta tggtatgatc
     3181 tgcaatgcct aagcgtagac tttccgtaat aaatttcata atatatttgg cttcacggta
     3241 agtggcatca tttaaaaggt tactgacaag tcgcatttta atttcttggg agcctggccc
     3301 agtagtacga gcaattctgt ctaaagtata ataaaccctc tcaactgtca ttttttcgct
     3361 aaatagagtc atttgatttt ttgttttcat aacttcttct gcagcagctc ctatgtctcc
     3421 ggtcctccga taaattcctt ctataattga gacttctact ccagcagaat atgcaagagc
     3481 tcgaatagcc atcttttcag ccaagcctaa ttcgattcct tcgtaatctg gatagagctt
     3541 tccttgaata agatatatga ccttgtcaat tagctcaaca ggagttattt tcaataacga
     3601 tactagatga tcagtgaggg caagcctgct tgaagtggtt tccatttttt caaaagtttc
     3661 tgcaattaaa gtaaaatcca atatttgaat taagatgagt tatgctttaa attttattaa
     3721 atagatacct atttgaaata cttaaaatta tctaaggatt agcttaggaa tatctagatt
     3781 aagaaataag tgctctataa cttaatattt gtaaccttca aaagcaaatg taaggtaagt
     3841 ctagtaagac cataaaaata cttgttatat aaagtcatta ttaatatttt attgttacga
     3901 ggataaaaca gttgagaatt gatatcaata agatcccgta gtatagtttt taatggtaac
     3961 gaaacccatg actcgtccta caatttataa atatgaatta agcaaattct ctcagtgtgg
     4021 gtggcaataa acaaaagacc tccgttggat cttcggataa ggctaatacg aatactcaag
     4081 ttggcgacac aaaatcatct aagaaagaag atagtaagaa aataggttca aaacagcagc
     4141 aaagacaaaa attatcagta tttgtggaag aacctctagg attgaaatta cttcaaagta
     4201 tgaaagcaat tacgatacag agttatgcta gatctgcagg agtaaaaatt tctgttgcta
     4261 atgcttttat aaaatcggct gaatccaaag gaattgttag aaatgtaggg ggatacagcg
     4321 gtcacaaggt ttatgaactt gtaaaataaa tgcgattgta cgttttttaa tgctgaaagt
     4381 tgttttttat tattatatta catttttttt aatatcataa tatcgccaga atgagtagat
     4441 tcaataattt ctaaatttga cttaacgatt cctataggat tcataggctt tatgactgaa
     4501 tctttaatga atatacatat agaactatta gacgtcataa aggcaatgtc tccacgcttg
     4561 aactgagttt tttgcttctc cgctccgatt gcaagtcttg tttgaatata tattattgat
     4621 tctgaaaatt tgtgtattct gtcctgcaag ggaaggtaac tcagaatagt tctaacagac
     4681 aatggagaga gatgacgtat cagctcacag gaagctattc ccttatctac tatttgtata
     4741 gtcataggaa ttcttgaaac tgaaccggct gtctgaatct tatccac
//
LOCUS       DATAAS010000104         3010 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4424120, whole genome shotgun sequence.
ACCESSION   DATAAS010000104 DATAAS010000000
VERSION     DATAAS010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3010)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3010)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3010
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4424120"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1087
                     /locus_tag="VHF08_01675"
     CDS             <1..1087
                     /locus_tag="VHF08_01675"
                     /inference="COORDINATES: protein motif:HMM:NF037270.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067387.1"
                     /translation="NVQRRSYAMFSLIMVVMRTMISSSQSINKPLENVELSSLLDRLR
                     EKNRSISSVFTLPVKLEPIFHSGRGFYYPDIGFTTLEEQSRFLESIKRLGIVTSNPYI
                     SIMQCSSCSSHRFCSTFVCKLCRSPNIMRGSAIAHDPCGNIDISDKYRAEDGTLVCHK
                     CNRNLKAIGVDYSLLDPIYHCMNCKTLLSDIGQFFKCLDCGKSSRAEDFPILLLNQYV
                     IDIVKLSNMVNVDKSMLSVIKELEKVGIKAVHNGAVIGASRISHIFSLAAYADKVEQP
                     FLVADIIETDGRTDEMRLLSFIGKCVDSRIENKIIVAIPNLKEDLRGLIKTNGFTLVE
                     SRSVEDIPLNLVKVIEERYNKVTESMQ"
     gene            1084..2544
                     /locus_tag="VHF08_01680"
     CDS             1084..2544
                     /locus_tag="VHF08_01680"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2067388.1"
                     /translation="MTNNKSKSLAIVIILSIFACVLLASSLVFLLGLTELTIANLFAA
                     GLTSSYLMILFKRRHDGMSREPQIMRIPFILFGILIIPVITTLVISMIYSYEFYLIII
                     SFLIPLTFINVMFFLPIAIYDRFLNKDLVNNRVLTSIPLISVIVPAYNEAENIKRTLH
                     SIIDSDYAAKEIIVVDDGSIDLTYAIASEFMQTYSKKCKITVIRKKNGGKVSAINYGL
                     RFAVGEIVIVIDADSIIQRNTLKDTAKEFQRPNVIAVAGKVKVLNPTNFLTRCTALEL
                     VLGANLLRPAFSLLGMVMVVPGALGGFTKESIMQYGSYDRDTIAEDFDITVKLAKGGG
                     KIVGMSAISYTQAPTTLKAFYKQRSRWYRGIFQTLLKHNNVMTNGRYGMLNRVGYPIT
                     LLMFIFPPFLDFVLIAFIVLAIVEGLSLTFILAFGLFFAFQFVLCGIAIIMDESRPWR
                     LILYAPFGLVGYKQIINFIVIKSIFDIIKQRRRYEW"
BASE COUNT          953 a          502 c          565 g          990 t
ORIGIN      
        1 taacgtgcaa cgacgatctt atgccatgtt ctctctaatt atggttgtga tgagaacgat
       61 gatctccagt agtcaatcaa ttaacaaacc tcttgaaaat gttgaattat ctagtctact
      121 ggacaggtta agagaaaaga atcgttctat ttcaagtgtt tttactctgc ccgttaagtt
      181 ggagcccata tttcattctg gtagaggatt ctactatcca gatattggat ttaccactct
      241 agaagagcag tcaaggtttc tggaatcaat taaaagattg ggcatagtaa caagcaatcc
      301 atatatttca ataatgcagt gttcctcttg tagttctcat aggttttgtt cgacattcgt
      361 ttgcaagcta tgcagatcgc ccaatattat gagaggatca gcaattgcgc acgatccttg
      421 cggcaatatt gatatttctg ataaatatcg ggctgaggat ggaacattgg tttgccataa
      481 atgcaatagg aatctcaaag caataggtgt agattattcg ttacttgatc ccatctatca
      541 ctgcatgaat tgcaaaactc tgctatccga tataggtcag tttttcaaat gtcttgattg
      601 cggaaagtct tcaagagctg aggactttcc aattctacta ttaaaccaat atgtaattga
      661 cattgtgaaa ttatcaaata tggtaaatgt tgacaagtcc atgctttctg tcattaaaga
      721 attagagaaa gtcggcatca aagcagtgca taatggagca gtcataggtg cctcaagaat
      781 atctcacatc ttttccctcg ccgcatatgc tgataaagta gaacagccat ttttagtcgc
      841 tgatataatc gaaacagatg gcagaacgga cgaaatgcgt ctcttatctt ttattggaaa
      901 gtgtgttgac tcaagaattg aaaataagat tattgttgcg atccctaacc taaaggaaga
      961 tttaagagga ttaattaaaa ccaacggatt tacgttggtc gaatcaagat ctgtggaaga
     1021 tataccactt aatctcgtaa aagttattga agaaaggtac aataaagtta cagagagtat
     1081 gcaatgacaa acaacaagag taagtctctt gcgattgtaa taattttaag catatttgct
     1141 tgcgtgctac tagcatcatc tctagttttt cttctgggat taactgagct gacaatcgca
     1201 aatctatttg ccgctgggct cacttcaagc tatctgatga tattattcaa gagacgacat
     1261 gatggcatga gtagggagcc tcaaattatg cgaatcccat ttatcttatt tggaatattg
     1321 attattcctg taattactac attagtgatc tcaatgatct actcatatga attttactta
     1381 attattatct catttttgat accattaact ttcattaacg tcatgttttt tttgccaatt
     1441 gcaatatatg atagattcct taacaaggac ctggttaata atagagtact aacttccatc
     1501 cctcttattt ccgtaattgt gcctgcttat aatgaagcgg aaaatattaa acgtacttta
     1561 cattctatta ttgattcaga ttatgctgcc aaggaaataa ttgtagtaga tgatgggtct
     1621 attgatctga catatgccat agcatccgaa tttatgcaga cttattctaa aaaatgcaag
     1681 atcacagtta tacggaagaa gaatggtgga aaggtatctg caataaatta tggtttaaga
     1741 tttgctgttg gtgaaattgt aattgtcata gatgctgatt caattataca aagaaataca
     1801 ctaaaggaca ctgcaaaaga atttcaacgc cccaatgtta ttgctgttgc aggaaaagtt
     1861 aaggttttga accccactaa tttcctaaca agatgcaccg cattagaatt agtgcttgga
     1921 gcaaatctct taaggccagc atttagcctg ctagggatgg ttatggttgt acctggtgca
     1981 ttaggaggat tcactaagga aagtataatg caatatggat catatgacag agatacaatt
     2041 gcagaggatt ttgatatcac agtcaaactt gctaaaggag gtggaaaaat agtcggcatg
     2101 tctgccattt catacacgca agctccaact actctaaagg ccttctataa acaaagaagt
     2161 cgttggtacc gtggcatttt tcagaccttg ttaaaacata ataatgtcat gacaaatggg
     2221 agatatggta tgttaaatag agttggatat ccaattactc tattgatgtt tatttttcct
     2281 cctttcttag attttgtcct tattgcattt atagttcttg caattgtgga aggactatcc
     2341 ctgactttta tattggcttt cgggcttttc tttgcttttc aatttgttct atgtgggatt
     2401 gccattatta tggacgaaag taggccatgg aggctaattt tatacgctcc atttggtctt
     2461 gttggataca aacagattat caacttcatc gtcataaaaa gtatttttga tataataaag
     2521 caaagaaggc gttatgaatg gtagagggat atgaaatctc cccgggaagc catctacaat
     2581 gatggagcat ttagataggc tattgaccgg tctcttcaat ataataagta acatgttcaa
     2641 gctcttatgt cgcaatatat tctctactaa aatatgattt gtttgatggc tgaccatatt
     2701 ctagaattag actcattgtt tcaatatttt tcttaatact ttttttataa tggctgtata
     2761 tggcgctctc aaaaaagtga cgcaacatgc aataatcgga gcgtaacaga ttcgacaagt
     2821 gagctgaata taaaattatt atatctctat tacagaaggc tatgataata cttatcgata
     2881 tagtatgtcc agtcacaggg atgctatttt aatcgcatta ttaagatgtg gtcgaagttt
     2941 taaccattcc aaaataactg taagagtaaa cttttataat tactatctca atgctgataa
     3001 agcacgctca
//
LOCUS       DATAAS010000105         1986 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_102456, whole genome shotgun sequence.
ACCESSION   DATAAS010000105 DATAAS010000000
VERSION     DATAAS010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_102456"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            291..956
                     /locus_tag="VHF08_01685"
     CDS             291..956
                     /locus_tag="VHF08_01685"
                     /inference="COORDINATES: protein motif:HMM:NF013743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HEX2067389.1"
                     /translation="MKIDHCIFPEGIFYDTENFVWANLNNDKTVTIGITAILASIAGR
                     LSTIKLKEIGTELEKGKSVGTIESIKYFGVVRTPVRGSIAEINKDIINQPKLVNDFPY
                     TEGWIMKINPSNLSKDLIGLDTIENCHTKIISTIEELHVRCFAEFPDHEMFEIGVECA
                     ATLTKLDELMTKLSIGEVIHLVSDDQTADLEIYRWADENKQSLLETRREGNLFHFILK
                     KIK"
     gene            complement(1007..1849)
                     /locus_tag="VHF08_01690"
     CDS             complement(1007..1849)
                     /locus_tag="VHF08_01690"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEX2067390.1"
                     /translation="MEYAHPEVLVDTQWVQDHLKDPKVRVAEVDYDPKANYKLGHVPG
                     AVLFDWKEDINDPLTRNIFSKQSCEDLLQRAGINNDTTLILYGDFNNWFAAFAFWVFK
                     YYGYDDIRLMNGGRKKWLEEDRPLSKDIPEYPKGNFKAAEPDKSIRVFLNYVRDSLGS
                     SQKVLIDVRSPKEFTGEILAPPEYPTEHAQRGGHIPGALNIPWSQAVSEDGTFKSAEE
                     LKKLYESKGITSDKEVITYCRIGERSSHTWFVLKYLLGYPDVKNYDGSWTEWGNMIDN
                     PIEK"
BASE COUNT          658 a          364 c          329 g          635 t
ORIGIN      
        1 ttcgcgcagt cgaacaatga aataactaaa gaaagatacc agaagaatat attatataca
       61 aagcaagcca tctatgatca aaatatctcc tatagatctt tcaatcaggc tactgactct
      121 ttggatctgt aatatatacg aggtgttgaa aaaatctaac ctagatagtt atgaaaagaa
      181 ggattcttag ccttattatt aatatctgat gtatgtttgt aatgggcgat ctagttatga
      241 tcgatataac aatgtaaaag aataaacttg gtatcattat atatcaatct gtgaaaatag
      301 atcattgtat attccctgag ggtatttttt atgatactga gaactttgtt tgggcaaacc
      361 ttaacaatga caaaacagta actattggga tcacggccat tttggcctca attgctggaa
      421 gactatcaac tataaaatta aaagaaattg gcacagaatt agaaaaggga aaaagtgtag
      481 ggacaataga aagcataaaa tattttggtg tcgtacgaac ccctgtcaga ggaagcattg
      541 cagaaattaa taaagatata attaatcaac ccaagttagt aaatgatttt ccatatacgg
      601 aaggatggat aatgaagata aatccctcca atcttagtaa ggatttaatt ggtctcgata
      661 ctattgagaa ttgtcatact aagataattt caactattga agaattacac gtaagatgct
      721 ttgcagaatt tcctgaccat gaaatgtttg agataggagt tgaatgtgct gccactctta
      781 caaaacttga tgaattgatg acaaaactgt caatcggcga agtaatacat ttagtatctg
      841 acgatcagac agcggatcta gaaatctatc gatgggcgga tgagaacaaa caatcactat
      901 tagagacaag aagagagggc aatcttttcc attttatatt gaagaaaata aagtagacag
      961 actaactgac tgacaaggca tttgtcttgt gtattatttt gatacatcac ttttctattg
     1021 gattatctat catatttccc cactcagtcc aagatccatc ataatttttc acatcaggat
     1081 agccaagcaa atattttagg acaaaccatg tgtgcgatga cctctcacct attcggcaat
     1141 atgtaataac ctctttatct gaagttattc cctttgattc atataatttt tttagctctt
     1201 ctgcagactt gaatgtacca tcttcactga ctgcttgact ccacggaata ttaagtgcac
     1261 caggaatgtg gcctccccgc tgggcatgtt ctgttggata ttctggggga gccaatatct
     1321 cacctgtgaa ttcttttgga cttctaacat caatcaatac tttttgactt gaccctaacg
     1381 aatctctgac atagtttaag aatactctta tactcttatc tggctctgca gctttaaagt
     1441 tacctttggg atactctgga atatccttgc ttaatggcct gtcttcttct aaccattttt
     1501 ttctaccccc attcatgagt ctaatatcat cataaccata atacttaaac acccagaatg
     1561 caaatgctgc aaaccaattg ttaaaatcgc catataggat cagtgttgtg tcgttattaa
     1621 tcccagccct ttgcagcaaa tcttcacaag attgtttact aaaaatattc ctagttaacg
     1681 ggtcgtttat gtcttctttc cagtcaaata atacggcccc tgggacatgc cccaatttat
     1741 aattcgcctt cggatcataa tcaacctcag cgactctaac tttgggatcc ttcagatgat
     1801 cttgtaccca ttgagtatca actaatactt caggatgtgc atattccaat aatattcact
     1861 acagatagat ccttgtcata tattaaattt taaacagatg tctattatga ctagtgtatt
     1921 aatttatcaa aaacttaacc tgattcatag ccagaaatac tagatgaatt attaataatt
     1981 gtagcc
//
LOCUS       DATAAS010000106         2160 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2802827, whole genome shotgun sequence.
ACCESSION   DATAAS010000106 DATAAS010000000
VERSION     DATAAS010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2160)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2160)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2160
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2802827"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            315..560
                     /locus_tag="VHF08_01695"
     CDS             315..560
                     /locus_tag="VHF08_01695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067391.1"
                     /translation="MVFAMDYYPYNRKVLKGCGLTSLPDRRTFDRRRLSTISIDIKER
                     ISTIGNAFVNKKLVDPYILTIDSTLLKAKGYVCTNHR"
     gene            557..742
                     /locus_tag="VHF08_01700"
     CDS             557..742
                     /locus_tag="VHF08_01700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067392.1"
                     /translation="MIKAVVLRSGIDTDARWGFSHRKGWILGYKFYVTSILVLLSYHY
                     RQVLLRLMYKIIQYILQ"
     gene            739..867
                     /locus_tag="VHF08_01705"
     CDS             739..867
                     /locus_tag="VHF08_01705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067393.1"
                     /translation="MTSLLPKGVRYIAADSGYDDYKLYYMSINRRGFELLCPISEI"
     gene            1465..1719
                     /locus_tag="VHF08_01710"
     CDS             1465..1719
                     /locus_tag="VHF08_01710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067394.1"
                     /translation="MDGFLASFGEEVTGECCILRNTWQKVKPRYSYRIGLTKYPKQFK
                     STGIKTLVGRTLQIQGIRRKLDLRNGEKNHDWKTLSLKTK"
     gene            1758..>2160
                     /locus_tag="VHF08_01715"
     CDS             1758..>2160
                     /locus_tag="VHF08_01715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067395.1"
                     /translation="MVFYFSYLFEYGHKDESIKKPNINNTIVLFTITVLILYVLTLKF
                     SYYAYAQTDNVISGRVDLHSDDKTALFIPSSNIFSSATSTGTPQVQDLDGNAMNSTKT
                     SSFTTVISADIEKYFVAIMRANHDNQQTLIET"
BASE COUNT          809 a          357 c          363 g          631 t
ORIGIN      
        1 atagcaacga taggttcaca agatataaaa aacccacaat attacgatcc tgagaaatat
       61 ccctatagta ataatctaaa tctggctgag ggcaaagctg gaagaatttc attcagagca
      121 ttaggttacg caattatacc aaattcaatt atgctacatt aatcaataac aacaatcttt
      181 acatattgaa aagagcagaa gcaggttctt caatttcatt atatatagta ataggtaccc
      241 ttaagctcca actgtgatac tgaaatgttt tgtaataagg atatagttga aattgaattc
      301 taatctagca gtacatggtt tttgccatgg attattatcc atataacaga aaggtattga
      361 aaggatgtgg attgaccagt ctgcctgaca gaaggacatt tgatagaaga aggctttcga
      421 caatatctat agacatcaaa gaaaggatat ctactatagg aaatgcattt gtaaataaaa
      481 agctagttga tccatacatt cttacaatag atagtacgtt actgaaagcc aaaggatacg
      541 tctgcacaaa tcatcgatga tcaaagcagt agtactccgt tcaggtattg atactgatgc
      601 aagatgggga ttcagtcatc gcaagggatg gatacttggc tataaattct atgtaacatc
      661 aatacttgtt cttttatcat atcattatcg gcaggtttta ctcaggctaa tgtataaaat
      721 aatccaatat atcctacaat gacgtcttta cttccaaaag gggtacgtta catcgcagct
      781 gattctggat atgacgacta caaactatac tatatgagca taaatagaag aggatttgag
      841 ttgctatgtc caatatcaga aatatagaac cttactttaa gtaacagcct gcaattgata
      901 gaattctata atctgaatta ggacaggtca tttattcttg gagatctata tccatagaac
      961 cattaataga acacatcaaa atcgttttca aaatagatcc tttattaaca aaaggggata
     1021 atagaaagca gtgggtatag taccactatc tcagtaccac tctatcagat cgttgtttgt
     1081 tacaattgca ggactcacaa agaacatcca aaagcaatta agttgttctg tagaatgaac
     1141 cgtattaaca tattttggga tataatatta cactctcttc ctaaagtaaa gtagcatgca
     1201 atgatcgcat gcctacagta caagaaataa acaaactaat cgataccctg acaggaggat
     1261 caagccaatt gtattattgt ctgtgtcaac aggtataaga gttggagcat gggattatat
     1321 aaaatagaaa catttcacac gaataaggaa gaatgaaaat ggtggtgcta ttattctctc
     1381 gctgataaaa tagtcatata tccaaataaa cctgaagact atttttacat ttatgacttc
     1441 tgaagcctat aacgcagtca aagagtggat ggatttcttg cctcatttgg agaggaagtt
     1501 acaggtgagt gttgtattct aagaaataca tggcaaaaag tcaaaccaag atatagttat
     1561 cggattggat taacaaaata tccaaaacaa ttcaaaagca cgggaatcaa aacactagta
     1621 ggaagaacct tacagattca aggaattaga cgaaagcttg acttgagaaa tggcgaaaag
     1681 aatcatgatt ggaaaacatt atcattaaaa acaaaataga caacaattaa atttacctag
     1741 acaaaaatat atagagtttg gtcttttatt tttcctattt atttgaatat ggacacaaag
     1801 atgaaagcat aaaaaaacca aatataaaca acacaattgt tctttttaca atcacagtac
     1861 tcattttgta tgtattaacc ttaaaattca gctattatgc atatgctcag acagataacg
     1921 taatttccgg aagagttgat ctacactcag acgacaaaac tgctttattt atcccatctt
     1981 ctaatatctt ttcttctgct acctctactg gtactccaca agtacaagat ttagatggta
     2041 atgcaatgaa ctccacaaag acatcgtcat ttactactgt aatatctgca gatatagaaa
     2101 aatactttgt ggccataatg agagcaaatc acgataacca gcagacatta atagagacat
//
LOCUS       DATAAS010000107         1939 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_650388, whole genome shotgun sequence.
ACCESSION   DATAAS010000107 DATAAS010000000
VERSION     DATAAS010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_650388"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            486..1247
                     /locus_tag="VHF08_01720"
     CDS             486..1247
                     /locus_tag="VHF08_01720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067396.1"
                     /translation="MKISYELNPPKILIGDHFDAFKLNQEMQILLDRSSELINLATGI
                     HLTDSVLGIPRVSSVTAAGYIKNVGNKLKLSCSVRTRDRNFISLCQFVTDAILIGVES
                     LLILRGDEPTDGQKNSGLKPTSILSVLKDKKYDKAIHLNLSVPSKINNGSLLQKKIEA
                     KPHSWVTQLIASLSDLGEIVDIAKSFKIKVVACIMVPSDKNRRSAEIIGLDWNEYEKN
                     PVDFIKEASTMADEVLISSPNSFRAGIELLTKLGQ"
     gene            1325..1453
                     /locus_tag="VHF08_01725"
     CDS             1325..1453
                     /locus_tag="VHF08_01725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="C2H2-type zinc finger protein"
                     /protein_id="HEX2067397.1"
                     /translation="MPSSEILSCKVCGQTFDTIESLNEHMKSEKEDVELRNKGIDG"
BASE COUNT          683 a          290 c          342 g          624 t
ORIGIN      
        1 tcctctttgt taaaaaaata tgaggtgtct catcattata atgaattata actaacacag
       61 ctgcaagacg aaaaggaact ggatctgaaa tgttctcagt tattgcattt aatgaaggag
      121 tcagacggga gagtatctta cttctattca acatatctat acatagaaaa ttattgaaat
      181 aaaatttatg tggatattgt aaaatgaaag agacttattt ttatagtgat catatacaaa
      241 atatcgtttt tgataataaa gacaaatttg ttatcaataa taagtcattg ttagaacttg
      301 acatttttat ttagttgtat catgttttga agaaagacag atgcaaattt ttattaaaga
      361 taatgatcac gcctttacta tagttatatg ctaaagtttt tccattgtga atatatgaaa
      421 tagttctata gttagcctct catttaataa acccatctta taaagagatg ccttgcagaa
      481 atactatgaa aatatcttat gaactaaatc caccaaaaat acttattggt gaccatttcg
      541 atgcctttaa gctaaatcaa gaaatgcaaa ttttattaga taggtcgtca gaattgatta
      601 accttgctac tggtattcat ttgacggatt ctgtccttgg cataccacgt gtatccagtg
      661 ttactgcagc tggctatata aaaaacgtag gtaataaact gaaattgagc tgtagcgtta
      721 gaacaagaga tagaaatttc atatcacttt gccagtttgt cacagatgca attcttatcg
      781 gagttgaaag cctacttatt ttgaggggcg acgagccaac agatgggcag aaaaactccg
      841 ggctgaaacc tacgtcaata ttatctgtcc tgaaggacaa aaagtacgat aaagcaattc
      901 atttgaattt atctgtcccc agcaagatca acaatggatc gttactccaa aagaaaattg
      961 aagcgaaacc acattcttgg gtaacgcagt taatagcatc tctttcagac ttaggtgaaa
     1021 tagttgatat cgcaaaatcc tttaaaatta aagtagtggc atgtataatg gtgccttctg
     1081 ataagaatcg gcgatctgca gaaataattg gattagactg gaatgagtat gaaaaaaatc
     1141 ctgttgattt tataaaggaa gcaagcacta tggcagatga agttcttatt tcctccccta
     1201 atagttttag agcgggaata gagctgctta caaagctagg gcaataaatc caattatgtt
     1261 ccattttatt gcctggcagt agatagatat actttaatgg cattgtatcc atatatacaa
     1321 aatcatgcct tcaagtgaaa ttctctcatg taaagtatgc ggacaaacat ttgatacaat
     1381 agaatcactt aacgagcata tgaaatcgga gaaagaagat gtggaactta gaaataaagg
     1441 tattgatggt tagtttaaac aaatcataaa aaactagtat tatattggtg attcttcatt
     1501 atttcagtcc aataattttt tgttgcccct tattttccat aattagtgca tttttaattc
     1561 ttcccatatg attattacca tagaaatccc aatgtagtat tgataacttt tttcaactca
     1621 tttcttttaa cctactggaa tggaaatgta caagaaatag gtagaaggaa caaaaataga
     1681 atgattatta catgaacaat acacagaaaa gtttcgcaat acacaataat tttttataca
     1741 gttgatttta tcggttaaca gatcagtgaa agagaatgct gatcaggtat ggatataccg
     1801 tctaaatgtt ggtgaaagaa gcaagtgaat aaggatgaaa gaattgttgc ggttgattat
     1861 agttcagtta ctcatatcag gatcagatgc attcttgctc tggatggtac cgttctccat
     1921 cactgtcaaa gagctgttt
//
LOCUS       DATAAS010000108         2251 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3345426, whole genome shotgun sequence.
ACCESSION   DATAAS010000108 DATAAS010000000
VERSION     DATAAS010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2251)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2251)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2251
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3345426"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            524..685
                     /locus_tag="VHF08_01730"
     CDS             524..685
                     /locus_tag="VHF08_01730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067398.1"
                     /translation="MSILLEEDLKEIEKTEGVPVCGANLSSPVMDTAYYIDEIHYKIG
                     NRLYIENAD"
     gene            1143..1493
                     /locus_tag="VHF08_01735"
     CDS             1143..1493
                     /locus_tag="VHF08_01735"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015925.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004497 - monooxygenase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="putative quinol monooxygenase"
                     /protein_id="HEX2067399.1"
                     /translation="MIETTDLAKFKNRTEKSIRYLAFVEAKKDHGQELMNILFNTIVE
                     PTRREEGNIAFVPHFSIDNPDEILFDEIWIDKESIDNHFKQPYMKDLFPKIEHLLAKP
                     IALKSYREVKVSDI"
     gene            1791..>2251
                     /locus_tag="VHF08_01740"
     CDS             1791..>2251
                     /locus_tag="VHF08_01740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067400.1"
                     /translation="MSINNKATNRNKDKRFSVDNSDYQDSKEEESAKTTTAIDITKAS
                     STSKDILDITDTPDVATWNKGTQIKGSAADIMKRSQERGTKITQGKITRTNATTIDLK
                     EKGPEDLIIDSANKEDVAKVVNSGISLTDKEEESFSISDNNLPDISKKSQKA"
BASE COUNT          905 a          296 c          353 g          697 t
ORIGIN      
        1 ttccaacatc aaaatagtgc ttgatgtttt tataaatcca acattgacaa gtctgttaaa
       61 tcttgccttg actgtaggtg tagtatgcca gtttttacgt gagatttcat gcaataattt
      121 gcaaccatct tttaacaata ccgtcagaat ataggcctat tatggttatc ttgttgaata
      181 tatatgttta tcattttaat tgtacccaat atgttgtatt tgacaattgt aagtgtctga
      241 tattgtaaat ctgtatataa ttaatagaag agatgacaaa agatattatg tcaaatcttt
      301 gataagagaa gcatatttcg tcaatatatt tgcgatcaaa attaatactt ttttttgtgt
      361 tagtatataa gtgtttatgt acggtatcca tgaaatataa tattcaataa ctaattgttt
      421 atgttttata tgatattaat gattatttat aaattattat atgatgtaat cgaaaaaata
      481 gattataatt cttttatatt agcatataca tataattgtt aatatgagca ttctgcttga
      541 agaagatctt aaagaaattg aaaagacaga aggagtacct gtatgcggag caaacctctc
      601 atcccctgta atggataccg cctactatat agatgaaatc cattacaaaa taggaaatag
      661 gctatatatt gaaaatgctg actaatagta aaaagcaatc ctgatagctt ttaccaaaat
      721 aacaagaatt gaagagaatt tgctgtagag aatagtcaga gaatttagga ttagtaatca
      781 tctcatcagt atactgaaaa agtaaagata aatagatttc acagaaataa aattttttct
      841 taaaaaagta tattcaaaga agcagtaaat ctatggaagc aagaccacat tagacagcag
      901 aagaaaatat aaatgaaaaa ggaaaacagt attattaaaa attctttaag aatagacatc
      961 taatgaagca ctattgttat ataaaatata taataacaag atctctcttg atttattatg
     1021 gtagtagtaa aaggctaatg tctatatcag aactgatata gtaaaaagta agaaattgag
     1081 tgatatatag tcaattcact gaaaagacac ggttaataat actgactttt atgtaaatct
     1141 ccatgataga gacgactgat ttagcaaagt tcaaaaatag gacagaaaaa tcaataaggt
     1201 atttagcatt tgttgaagct aagaaagatc acggtcaaga gctaatgaat attcttttta
     1261 ataccattgt agaaccaaca cgtagagaag aaggaaatat agcttttgta ccccattttt
     1321 caatagataa tcctgatgaa atactgtttg atgagatttg gattgataag gaaagtatag
     1381 ataatcattt taaacaaccg tatatgaagg atctttttcc aaaaatagag catctgctag
     1441 ccaagccaat tgcattgaaa tcttatcgtg aagtaaaagt ttctgatatc taatcgctag
     1501 atatagttat atttatccta ttgagagtaa acacacacac aattttttat tcacgctaaa
     1561 gagttgagaa acacaagaca attaaagatt tgctaaagta ttctaaataa tagacacatg
     1621 cagtatatcg actttgaatt tatctctaga gtatacagtt gtatttacca ttagtgcaat
     1681 ccattttgtc ttggtaatct atattattag agtcaacagt gatagcattt cttcaagagt
     1741 ccccacaatc ttatctaaat ataaaatagg ctatagatta tcatacgaag atgagcatta
     1801 ataataaagc aacaaacaga aataaagaca agcgtttttc agttgataat agtgactacc
     1861 aagattcaaa agaagaagaa tcagcaaaaa ctactactgc tatagatata acaaaggcta
     1921 gcagtacatc aaaagatata cttgatataa ctgacactcc tgatgtagct acttggaata
     1981 aaggaacaca aatcaaaggc agtgctgcag atataatgaa aagatcacaa gaaagaggaa
     2041 caaaaataac tcaaggaaaa ataacacgaa ctaatgctac cactattgat ttaaaagaga
     2101 aaggacctga ggatttgatt atagattcag ctaataaaga agacgtagct aaagtagtta
     2161 actctggaat atctctaaca gataaggaag aagagtcatt ctctatatca gataataatt
     2221 taccagatat atcaaaaaaa tcgcaaaaag c
//
LOCUS       DATAAS010000109         2647 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_105108, whole genome shotgun sequence.
ACCESSION   DATAAS010000109 DATAAS010000000
VERSION     DATAAS010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2647
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105108"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            445..1455
                     /locus_tag="VHF08_01745"
     CDS             445..1455
                     /locus_tag="VHF08_01745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEX2067401.1"
                     /translation="MNNIIKLLIEIVIVVTVTAILSSVFAINTTIIHATNNTASEINN
                     TIASINGNKASKVKVVASFYPIYDFVQKIGGDRVEVSSIIPPGVEPHDWEPTIQQRLK
                     AESSDMIVYNGAGFEKWIEEIDAKFRVDTSEGLELLEGSSEGGDHQTSASGHTDLNEN
                     ADPHIWLDPILAKYQIEKIRDGLIKIDPANTNYYNGNAKKFIAELDSLDAFIRSELSN
                     CDKIDFIAFHNAFTYFSNRYGLNQHSVYEGVSPEGDILPQRLQEIIKLSRELNIDTIY
                     AEDLIDPRLVNVIATEIPNGKVLILSPIEGIDEEEQKAGKGYIDKMRQNIENLKVGLR
                     CT"
     gene            1446..1613
                     /locus_tag="VHF08_01750"
     CDS             1446..1613
                     /locus_tag="VHF08_01750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067402.1"
                     /translation="MYIVSIDAVYYRYILAVPNLGNSIIFNIKEENDQPEVIGSNYAA
                     ENSTQLNRKLI"
     gene            1635..2492
                     /locus_tag="VHF08_01755"
     CDS             1635..2492
                     /locus_tag="VHF08_01755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEX2067403.1"
                     /translation="MTIILEILQFLEFSFVQRALIAGVAVAIICSIIGLFLVLRRHSL
                     FGDALSHMAFGGIAIGMYTNVYPIWTAFIVSILAALAITKLRQSTNIPPDSAVAVLLS
                     SGLALGVVLVSLSDGFSIDLFSFLFGSILLVSVEDTLMILVIAVTILSIVLILYRKLL
                     YITFDEEQAKVSGLQVTKLNYLFIVLAGITVIASMRLVGILLISSLIVIPTITAIMFG
                     KGFRNTALVSVSISVLSVVTGIIISYMLNLAPGGTIVLVSVVIFIAILATKYSIKKLR
                     RFEKSTIRI"
BASE COUNT          887 a          395 c          457 g          908 t
ORIGIN      
        1 ggtaaaattg atgttaatat aaaaatagtg ggaggaaaaa gaatgcctct ttcagatgta
       61 gttaagaaat atgagactga gataaggaat acaatattat caaaatagtc atttattact
      121 ttcgacatgt tttagcctgc cttctccttc ttcctcattt cattattgtg cttattagat
      181 aataattgtc aaatggtaac atgtcaacca cattagtttg taacctatgc agtataacaa
      241 tatcatataa ttatttatta cacaatagtt tctatagtgc aattcatatt attatcagct
      301 ttattatttt catcgtagta tgtatagttc ttccattgca aaatgctgtc catatccaca
      361 ataaccacgt tctctttttt acaagataaa taaaatcaca ttattaataa aagtatatat
      421 cattattaat tttaatatat aatattgaat aatattatta aactgctgat agaaattgta
      481 atcgtagtta cagtaactgc catcctatca agtgtatttg cgattaatac aactatcatt
      541 catgctacaa ataatacagc ttctgaaata aataatacta ttgcaagtat aaatggaaat
      601 aaagcgtcta aagtaaaagt tgttgcatca ttctatccaa tatatgattt tgttcagaaa
      661 ataggtggag atagagttga agtatcatct ataattccac cgggagtaga accacatgac
      721 tgggaaccca ctatacaaca aagacttaag gcagaatctt ctgacatgat agtatacaat
      781 ggcgcaggat ttgaaaagtg gattgaagaa attgatgcga aatttagagt agatacgagt
      841 gaaggattag aattgcttga aggaagtagt gaaggagggg atcatcaaac ctctgctagc
      901 gggcatactg atctcaatga aaatgctgac cctcatatat ggttggatcc gattctagca
      961 aaatatcaaa ttgagaaaat tcgtgatgga ttgataaaaa ttgatccagc taatacaaac
     1021 tattataatg gaaatgctaa aaagtttatt gcagaacttg attcattgga tgcattcata
     1081 agatcagaac tcagcaactg tgataaaatt gattttatcg catttcataa tgcatttact
     1141 tacttttcaa atagatatgg actaaaccaa catagtgtgt atgaaggagt ttcaccagag
     1201 ggagatattc taccacagag gttacaagaa attataaaat tatctcgtga attgaatata
     1261 gataccattt atgcagagga tttgatcgat cctcgtctcg ttaatgttat cgcaacagaa
     1321 attcctaatg gcaaagtact gattctaagt ccaatagagg gtattgacga agaggaacaa
     1381 aaagcaggca aaggatatat tgacaagatg cgacagaata ttgagaatct aaaggtgggt
     1441 cttagatgta catagtaagt attgatgcag tatattatcg atatatatta gctgttccta
     1501 atttaggcaa ctctattata tttaatataa aagaagagaa tgatcagcca gaagtaattg
     1561 gttctaacta tgctgctgag aatagtacac aacttaatcg taagcttata tgaaatctgt
     1621 cataactata tactatgacc ataattcttg aaattcttca atttcttgaa tttagttttg
     1681 tgcaacgtgc gttgatagct ggagttgccg ttgcgataat ttgctcaata attggattat
     1741 ttttggtgtt aagacgccat tctctttttg gagatgcact atcacatatg gcgtttggag
     1801 ggattgctat aggtatgtat acaaatgtct atcctatatg gactgccttc attgtttcga
     1861 tccttgcagc attagctatt actaaactaa gacagtcaac aaatattcct ccggattcag
     1921 ctgttgctgt attgctatcg tctggtcttg ctcttggcgt tgttttagta agcttatcag
     1981 atggcttctc aatagattta ttcagctttc tatttggaag tatcctgtta gtaagcgttg
     2041 aagatacctt gatgatttta gtcatagcag taacaatctt gtcaatagta ttgattcttt
     2101 acagaaaatt attgtatatt acttttgatg aggaacaagc aaaagtcagt ggattgcaag
     2161 ttacaaagct gaactatctt ttcatagtgc ttgcaggcat aactgtgatt gcatcaatgc
     2221 ggttggtagg aattttacta atctcttcat taattgtaat tcctacgatc actgcgataa
     2281 tgtttggaaa aggttttaga aatacagcct tagtttctgt ttcaatatcg gtattatctg
     2341 tagtaacagg cataattatc tcttatatgc tgaacttggc tcctggtgga actattgttc
     2401 ttgtttctgt agtcatattt attgcaatat tagcaacaaa atactccatt aagaaactta
     2461 gaagatttga aaaatctact attagaattt agatcttatc attatcccaa cctttgcatg
     2521 cgattattac tatacaataa catagagtgt tttttatctt ttcaaaggtc atttctcttt
     2581 tatttgtagt agaatttttc atgtctacat atatatatcc tgaattatgt cccagggcaa
     2641 tacaaac
//
LOCUS       DATAAS010000110         1774 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_105186, whole genome shotgun sequence.
ACCESSION   DATAAS010000110 DATAAS010000000
VERSION     DATAAS010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1774
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105186"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            471..1553
                     /locus_tag="VHF08_01760"
     CDS             471..1553
                     /locus_tag="VHF08_01760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX2067404.1"
                     /translation="MNAKGKLIISTIIIVAVIVSSIFYSDSSSLFVESVNDNTQNSGS
                     SQILRIGYFPNINHAQAVIGLGNGTFQKALGDNIEVKTTIFNAGPSAMEALFAKQVDV
                     TYVGPNPAINAYVVSQGKDVRIISGASSGGAVFVVRNDSGIQSTKDFANKKFASPQLG
                     NTQDVALRKYLLDNGYKTKENGGNVEVVYAKPSDILTLMLKKEIDGAWAPEPWGARLI
                     KEANARIFLDERDLWPPKGQFVTSNIVARTDYLQSNPDVIKKLLTAHVDETEWINSHK
                     EEAIQAFNVELKKLTGQAISEDQLRGALSRLELTYDPVKESLFQSANSAFDIGFLGKT
                     RPDLSGIYDLDLLNAVIAEREKETIK"
BASE COUNT          648 a          267 c          315 g          544 t
ORIGIN      
        1 acatatttta tttgtaggaa gggaatttca acttatggga cagattatag caacaatgat
       61 aacaatcttt gcaattggac ttttgtttga taggtttgtt ttctacaaac tagaagaaaa
      121 agtaagatcc aagtggggac ttgatcagca aaatgaacaa taagagatgt attaaatagc
      181 aagcctagag cgagacttta actacactag atattattct ctttacattt aatagttgat
      241 gataataaaa tcttttgtat aaataaaaaa tacttgtaat gacaaattct actgttatag
      301 aagaaaagag ccaacttggt atatgtggat atgagttaac cttactttga ttattatgaa
      361 cctatattaa atacgtaagc gtcgcattat atgatattat tgcatataat atttctaatc
      421 tgcatatttg taagcggtaa tatatgtata ggctgctatt cccatggtaa atgaatgcaa
      481 aaggaaagtt aataatatca accataataa ttgttgcagt tatagtatcc tctatatttt
      541 attctgattc atcctcacta tttgtagaaa gtgttaatga taatactcag aatagcggct
      601 cttcacaaat tcttagaatt ggctactttc caaatatcaa tcatgcacaa gcggtaatcg
      661 gtttagggaa cggtacattt cagaaagctt taggtgacaa tatagaggtc aagacaacta
      721 ttttcaacgc aggtccatca gcaatggagg cattatttgc aaagcaagtt gacgtaacat
      781 atgttggtcc taatcctgca atcaatgcat atgtcgtttc acaaggaaaa gatgttagaa
      841 taatttctgg tgcatcaagt ggaggagcag ttttcgtggt tagaaatgat tcaggaatcc
      901 aatcaaccaa agattttgca aataaaaaat ttgcttctcc tcagcttggt aatactcagg
      961 atgtagctct tagaaaatac ttactagata atggttacaa aacaaaagaa aacggaggaa
     1021 atgtggaagt tgtatatgca aaaccctctg atatactgac tctaatgtta aagaaagaga
     1081 ttgatggtgc atgggcacca gagccttggg gtgcacggtt aataaaagaa gcaaatgcta
     1141 gaatattttt agatgaaaga gatctttggc caccaaaagg acagtttgta acatcaaata
     1201 tagttgctag gacagattat cttcaaagca atccagatgt gataaagaaa ttgctgacag
     1261 cacatgtaga cgaaacagaa tggatcaaca gccataagga agaagctata caggcattca
     1321 atgttgagct caaaaaactt acaggccagg caatttctga agatcagtta agaggagctt
     1381 tatcaagatt agaattaaca tacgatcccg tcaaagaatc actcttccag tcagctaata
     1441 gcgcatttga tattggattt ttaggaaaaa cacggcctga cttatcagga atatatgact
     1501 tggatctgtt aaatgccgtc atagcagaga gagaaaaaga aacaattaag taaatatgca
     1561 atttatgaaa ttatcaaaat aatatatata ataattgcta tattattatt actttttcta
     1621 gactgacttc aataatgtgt gccattatta ttattaatat tgactatacc acaaatctaa
     1681 atgtgtgttc atttacacaa gtgcaatata accaaacata atccttatta cattgatctg
     1741 atatcatctt aagcctaacc ccttagtatt tgac
//
LOCUS       DATAAS010000111         6490 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2803719, whole genome shotgun sequence.
ACCESSION   DATAAS010000111 DATAAS010000000
VERSION     DATAAS010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6490)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6490)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6490
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2803719"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..704
                     /locus_tag="VHF08_01765"
     CDS             <1..704
                     /locus_tag="VHF08_01765"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEX2067405.1"
                     /translation="PLKDLTLDTKDIIEKAKNCDAVFLCNPNNPTGLLSTRSIKKIIE
                     HIDSSTKILIDECFIELVDDDNAQYAIIDKIKEFDNLVILRSLTKSFGLAGLRVGYSI
                     CNPRLARQLSANKIPWNVNGMAQIAGIVALQDLMHLRKAREIIKKERRCMHDDIKRKM
                     NSFIPCQSDVNYFLIHLKENSVRVRDSILIKSGILVRDCSTFTGMEKAEYIRVAVKTH
                     KENLLLIEALESIDR"
     gene            719..1558
                     /locus_tag="VHF08_01770"
     CDS             719..1558
                     /locus_tag="VHF08_01770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobyric acid synthase"
                     /protein_id="HEX2067406.1"
                     /translation="MIQGTSSGSGKSTIVTALCRIFADKGYNVAPFKAQNMSSYSYMV
                     SETSHSIAMAQAIQAVASRKEPDVRMNPILLKPLGNYRSSIILNGIFYSEMYAKEYYK
                     TFVLQKGFPIILNSLESLRRENDIIIIEGAGSPAEINISKYDVANMLLAEKIRAPVII
                     TADIERGGCFASMIGTLKLLKPHHRDLVKGFLINKFLGDESLLDKAIKFVEKTTRKNI
                     LGVIPKVEFDLPNEDSLDTHTFNYSKLPRESWDCQIDIIAKAVKNSIDIQKIITEIAG
                     LKI"
     gene            1555..2535
                     /locus_tag="VHF08_01775"
     CDS             1555..2535
                     /locus_tag="VHF08_01775"
                     /inference="COORDINATES: protein motif:HMM:NF002281.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HEX2067407.1"
                     /translation="MIGEYLLLALVGAIVIDFLFGDPSNKHHPVAWLGKLVEFFIPKL
                     KDNDNNSAKKEKENGTIFSISLIITFGLAIHFLTFTSFHLLGSIAIIIVLALILKTTI
                     AIRSMEDSAGAIVNALERHDMNSARYNLSMIVRRETKNLDEQHVLSGTIECISESTVD
                     GIVSPLFFYSFFGPAGAFIYRIINTLDSMVGYFDNYYKDIGQMSARLDTVANYLPARI
                     TALLMVMSASIIGADWKNSMQILQRDHNKTLSPNAGYPMATMAGALRIKLEKIGHYSL
                     GEGYEDTTIEKCLAAISIMKLTTILFCIILSIPLITLLNLVGWWNFLFGF"
     gene            2525..3274
                     /gene="cobS"
                     /locus_tag="VHF08_01780"
     CDS             2525..3274
                     /gene="cobS"
                     /locus_tag="VHF08_01780"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: protein motif:HMM:NF014685.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008818 - cobalamin 5'-phosphate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HEX2067408.1"
                     /translation="MVFRSIQTIISFLTIIPTTKSSYNDIYSIARNMYLFPLAGAMIG
                     ILVGVLAYGISYYIQSLFTGLIVTFALIIITGFHHTDALADFADGLMAKGRKEDKYKA
                     MHDPAVGSAGVAALVIYIAGMIIAISNLPYGWKILTSIVTAEVIAKYIMVVQAYVGLS
                     AWDGISSPFTSAMKDKRKLLAATGIMFPIVWFMSGIYAGLISLGISLGTTAIIHHISN
                     KSFGGISGDVIGSSNEITRLSCLIVLSSLTI"
     gene            3290..3910
                     /locus_tag="VHF08_01785"
     CDS             3290..3910
                     /locus_tag="VHF08_01785"
                     /inference="COORDINATES: protein motif:HMM:NF024214.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NTP transferase domain-containing protein"
                     /protein_id="HEX2067409.1"
                     /translation="MIALVMCGGKGIRLRHFKTMEKPLLNLKGKAMIEYVLDALVYSQ
                     KFQRIIAVSSPFSSKTTTFLYYHPYYSNGLIEVINTEGASYSEDLSFILNKLKLDRVL
                     TVSADLPLLNSNIVNQIVIHNIPRFSCASIILEKHFVENIGITPSVVVNIGAQQYCHS
                     GIIIFNSPKFKECQNIKEYFILMNKREIAVNVNTFEELQLAERLLP"
     gene            complement(3911..4108)
                     /locus_tag="VHF08_01790"
     CDS             complement(3911..4108)
                     /locus_tag="VHF08_01790"
                     /inference="COORDINATES: protein motif:HMM:NF001629.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S27e"
                     /protein_id="HEX2067410.1"
                     /translation="MRKDTIMIPKPRSNFLSVQCIRCEEKKVIFSHTTMDLFCKSCGE
                     LIAKKTGSRANILGKIINAID"
     gene            complement(4122..4400)
                     /locus_tag="VHF08_01795"
     CDS             complement(4122..4400)
                     /locus_tag="VHF08_01795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L44e"
                     /protein_id="HEX2067411.1"
                     /translation="MKMQKELRKFCPKCKTHTVQSVSIYKKGRDRKTAEGTRRHAEDK
                     KGYGGQKFPELKRTAKTTKKITLRYSCRTCKRQTMKEGIRMHKLEIQP"
     gene            5180..5605
                     /locus_tag="VHF08_01800"
     CDS             5180..5605
                     /locus_tag="VHF08_01800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="thioesterase family protein"
                     /protein_id="HEX2067412.1"
                     /translation="MGYSVSFTVNVGATKERKVKINSNQTTSFLWEGENVFSTPAMIS
                     EMEETCRLLLKEQFISNAEWDSVGTVVNIKHLAATPIGTEVLIKSKVISVNGRRVMFD
                     VEAFDKIERIGQGQHERFIINVPQFKNKFNEKIKRLDAV"
     gene            5665..>6490
                     /locus_tag="VHF08_01805"
     CDS             5665..>6490
                     /locus_tag="VHF08_01805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HEX2067413.1"
                     /translation="MASIQTTAGGMPVLILKEGTKENKGKEAQRNNITAAKLISEIVK
                     TSLGPRGMDKMLVDTLGDVTITNDGATILKEIDVQHPAAKMMVEVSKSVDNEVGDGTT
                     SSVVLAGALLEKAEDLLNKDVHPSVIVDGYTAASEQALKLLQKIGIKVDVEDRELLIK
                     IARTSMDSKLVSDDSPILAQTVVDATKQVAEKNEGSDGLKIDLDNIKVEKKAGGSMRD
                     TALIKGIVLDKEVVHAGMPKRIEGAKIALLNSALEIEKTEMSAEIRINDPQQMQMFL"
BASE COUNT         2160 a         1070 c         1210 g         2050 t
ORIGIN      
        1 ctcccttaaa ggatttaacc ttagatacca aagatattat cgaaaaagca aaaaattgtg
       61 atgccgtatt tttatgcaat cctaataatc ctactggatt actttccacc agatctatta
      121 aaaaaataat agaacacata gatagctcta ctaaaattct aattgatgaa tgttttattg
      181 aattagttga tgatgataat gctcaatatg ctataattga taaaatcaaa gagttcgata
      241 atcttgtaat tttgcgatcg ctgacaaaat cctttggtct tgctggctta agagttggat
      301 acagcatatg caatccgaga cttgctagac agctatctgc taataaaata ccttggaatg
      361 taaatggaat ggcacaaata gctggtatcg ttgctttgca agatttaatg catttgagaa
      421 aggcaagaga aataatcaaa aaagagcgca gatgtatgca tgacgatata aaaagaaaaa
      481 tgaactcttt tattccttgt caatctgacg taaactattt tttgattcat ttaaaagaaa
      541 actctgtgag agtaagggat tctatcttga taaagagtgg aatccttgtc agagattgca
      601 gtacttttac aggcatggag aaagcagaat atatccgtgt agcagtaaaa acacacaaag
      661 aaaatcttct acttatagag gcactggagt caatagatag atgaattcaa tgttgctgat
      721 gattcagggt acatcttctg gttcaggtaa aagcactatt gttacggcac tttgtaggat
      781 ttttgctgac aaggggtata atgtggctcc gtttaaagct caaaatatgt cctcatatag
      841 ctacatggtt tccgaaacat cgcatagtat cgctatggca caggcaatcc aagcagttgc
      901 ctcaagaaag gaacccgacg tgagaatgaa tcccatttta ttaaaaccac ttggaaatta
      961 tcgaagcagt attattctca atggaatatt ttactctgaa atgtatgcaa aagaatacta
     1021 taaaacattc gttttgcaaa aaggttttcc gattatttta aattccttag aaagcctaag
     1081 gagagaaaac gatataatta taatagaagg tgcggggtcg cctgcagaaa ttaatatttc
     1141 aaaatacgat gtggcaaata tgttgctcgc agagaaaatc cgtgcaccgg taatcataac
     1201 tgcagatatt gagagaggag gttgttttgc cagtatgatt ggtaccttaa aattgttaaa
     1261 gccacatcat agagacttgg ttaaaggatt tttaataaat aaatttcttg gtgatgaatc
     1321 ccttttagat aaggcaataa agtttgttga aaaaactact agaaaaaata tacttggcgt
     1381 gataccgaaa gtcgaatttg atttaccaaa tgaggattca cttgatactc atacttttaa
     1441 ctattctaaa ttgcctagag agtcttggga ctgtcaaatt gacattattg caaaggcagt
     1501 aaaaaatagt atcgatatac aaaaaataat cacagaaatt gcaggattaa agatttgatc
     1561 ggagaatacc tacttttagc gcttgtcgga gccattgtta tagacttttt gtttggagat
     1621 ccttctaaca aacatcatcc tgtagcctgg ttgggaaagc ttgttgaatt cttcattcca
     1681 aagttaaagg ataacgataa taattcagca aaaaaagaaa aagaaaatgg aactattttt
     1741 tcaatttcct tgattattac atttggtctt gcaattcact ttctgacctt tacaagcttc
     1801 catttattgg gctctattgc cataataatt gtcttagctc taattttgaa gaccactatt
     1861 gcaataagaa gtatggagga ctctgctgga gcaatcgtaa atgcactgga aagacatgac
     1921 atgaatagtg ctcgctataa tttatcaatg atagtaagac gagagacgaa aaatctagat
     1981 gaacaacatg tgctttctgg aactatagag tgtattagtg aaagtacagt tgatggaatc
     2041 gtttcgcctt tgttttttta ttcttttttt ggccctgcgg gggcgttcat atataggata
     2101 ataaatactc tcgattctat ggttggttac tttgataatt attataagga tattggacaa
     2161 atgtcggcaa ggcttgatac tgttgctaac tatcttcctg caaggatcac ggcgcttttg
     2221 atggtgatgt ctgcaagtat aattggagca gactggaaga actcgatgca gatcttgcaa
     2281 cgtgatcaca ataaaactct tagccctaat gcaggatatc ccatggctac catggcaggc
     2341 gctctgcgaa ttaagctcga aaagatcgga cactattcat taggagaggg atacgaagat
     2401 acaactattg aaaaatgtct agctgcaatt tccataatga aactgactac gattctattt
     2461 tgtataatcc tctccattcc cttaattact ttgttaaatt tggttggctg gtggaatttc
     2521 ttatttggtt tttagatcaa tacagacaat aatttcattc ctcactataa tacctacaac
     2581 taagtcatcc tataatgata tctactctat tgcaagaaat atgtatcttt tcccactcgc
     2641 tggagcgatg atcggtattt tagtaggagt cctagcctat ggaatttcat attatattca
     2701 atctttattt actggcctca tagttacttt tgccctaata ataattaccg gcttccatca
     2761 tacagacgcc ctagctgatt ttgcggatgg tcttatggcc aaagggagaa aagaggataa
     2821 atacaaggct atgcacgatc ctgctgtcgg ttctgcagga gttgcagcac ttgttatata
     2881 tatagcaggc atgattattg caatatcaaa tttaccatac ggatggaaaa tactaactag
     2941 tattgttacg gctgaagtaa ttgcaaaata tatcatggtt gtgcaagcat atgtaggact
     3001 atccgcatgg gatggcatca gctctccatt tacttctgct atgaaagata agcgcaaatt
     3061 attggctgcc accggaatca tgttcccaat tgtatggttt atgagtggca tatatgccgg
     3121 acttatttca ttaggtattt ctctcggaac aactgcaatt atccatcata tatctaacaa
     3181 aagctttggt ggtatcagcg gtgatgtgat cggttcgtca aatgagatta cacgactttc
     3241 ttgtcttata gtgttatctt cattaacgat atgaatactt cataataaga tgatagcact
     3301 tgtcatgtgc ggaggaaaag gaatccgtct tcgacatttt aagactatgg aaaagccgtt
     3361 attaaactta aagggtaagg ctatgattga atatgttctt gatgcacttg tatattctca
     3421 aaagtttcaa agaataattg cagtatcaag tcctttttcc tcaaaaacca ccacttttct
     3481 ttactatcat ccgtactatt ctaatggttt aatagaagta atcaatactg aaggtgctag
     3541 ttactcagaa gacctttctt tcattctaaa taagctaaaa ctagacagag ttttaacagt
     3601 atctgctgat cttcctttat tgaactcaaa tatagtaaat cagattgtta ttcataatat
     3661 acctagattt tcttgtgctt ctattatatt agaaaaacac tttgtcgaaa atataggaat
     3721 cacacctagc gtagtagtta atattggagc acaacaatac tgccattctg gtataataat
     3781 cttcaattct ccaaaattca aagagtgcca gaatataaag gagtatttta ttctaatgaa
     3841 caaaagagag attgcggtaa atgtcaatac atttgaagaa cttcagcttg cagaaagact
     3901 actaccgtag ttaatcaatg gcatttataa ttttaccaag aatgtttgct ctagatcctg
     3961 tcttcttagc aattaattca ccacaagatt tgcaaaaaag gtccattgta gtgtgactaa
     4021 agattacctt cttttcttca catcgtatac attgaacaga caggaagttg ctccgtggct
     4081 tcggaatcat gatagtatcc ttacgcattt gagtgaccta cttacggttg tatctctaat
     4141 ttatgcattc ttatgccttc tttcattgtt tgtctcttgc aggtcctgca gctgtaccgt
     4201 aatgtaattt tttttgtagt ttttgcagtc ctcttcagtt caggaaactt ttggccacca
     4261 taaccttttt tatcttctgc gtgtctgcgt gtaccttctg cagtttttct gtcccttccc
     4321 ttcttataaa tacttacaga ctgaactgta tgagttttac attttggaca aaacttgcgc
     4381 aattccttct gcatcttcat attcacacga tatatattac gctaatttaa ggacatcgct
     4441 agtgacaaca gtcccaatac gcatgattaa gcttggcaat tccatacata aaatagtact
     4501 ttaaatcaac ttaataatta ggtaagagtc atggaagaac ggatttaatc gtatggtaaa
     4561 tcatacaacc ttttttcttc ctaatctcag atattggtta agcgtctgct acttgtagtt
     4621 aaaaccttat atttaccctt aacgtttgca taacgaggaa tatggaacta tttagtaatt
     4681 tgatacaaca aatagtgcct gcaactatcg agagctttgg cgtatggata ccattggcat
     4741 tcggtttagc cgttggtgtg gcttatgtta tcgcttcagc tgcacgacga agtagatgat
     4801 aattagatat ccaatctttt ctttttgaag tttattattc taaaacaggt attttattat
     4861 atatagcctt tttttactta tttcagaata atgtgtatac acagataatt attgtataat
     4921 atacaagtgc atcttctaat tatttactct ttttaaatta aatgcccaac cccaaagcaa
     4981 ggtcaaaacc aaccaacatt tccataccaa taccaacttt atatccatag aaagagttct
     5041 tttacagatt aaatatcctg tcttgttaga caaataagaa aatgagaagt aacaaggtaa
     5101 acaaaatata gtaataatac ttaatttaat attatcattg gactctaaaa aaatctaaaa
     5161 ataaccgttg tctattataa tgggatatag tgtgagtttt acagtcaatg tcggtgctac
     5221 taaggaaaga aaggtcaaga ttaattcaaa tcaaacaaca agttttctgt gggaaggcga
     5281 aaatgtcttc tcaacgcctg cgatgatatc cgaaatggaa gaaacttgta gactacttct
     5341 aaaagaacaa tttatttcca atgcagaatg ggattctgtg ggtaccgttg taaatatcaa
     5401 acatctggct gctactccca tagggactga agtcttaata aaatctaagg taatctcagt
     5461 taatggtaga agggttatgt ttgatgtcga agcatttgac aaaattgaaa ggattgggca
     5521 agggcaacat gagagattta taattaatgt acctcaattc aagaataaat tcaacgaaaa
     5581 gataaagcgt ctagacgcag tataatgtgt aaaactataa aagaggcata agaagaatca
     5641 gtatattcta ctaggtgata tagaatggcc tcaattcaaa ctactgctgg cggaatgcca
     5701 gtattaatat taaaggaagg aactaaagaa aataagggaa aagaagccca aagaaacaat
     5761 attactgctg caaagcttat ctcagagatc gtaaagacta gcttgggtcc acgtggcatg
     5821 gataaaatgc ttgttgacac acttggtgat gttacaatta caaatgatgg tgcaacaata
     5881 ttaaaagaaa ttgatgttca gcatccagca gccaagatga tggtggaagt ttccaaatct
     5941 gtagataatg aggtgggtga tggaacaact tcttctgttg tacttgcagg tgctttgctg
     6001 gaaaaagcag aagatttgct aaataaagat gtgcatcctt cagtaattgt agatggttac
     6061 acggctgcat ctgaacaagc attgaaatta ttacaaaaga tcggaattaa agtagatgtt
     6121 gaggataggg aacttttgat aaaaattgcg agaactagta tggattcaaa attagtttct
     6181 gatgacagtc caatcttagc tcaaactgtt gttgatgcaa caaaacaggt agctgaaaaa
     6241 aatgaaggca gtgatggact gaaaatagat ctagataaca taaaggtcga aaagaaagca
     6301 ggtgggtcta tgcgtgatac tgcattaatt aaaggtatag ttcttgacaa ggaagtagtc
     6361 catgcaggta tgccaaagag aattgaaggc gccaagatag cattgcttaa ctctgctctt
     6421 gaaattgaga aaacagaaat gagcgctgaa attcgcatca atgatccaca gcagatgcaa
     6481 atgttccttg
//
LOCUS       DATAAS010000112         2604 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_106798, whole genome shotgun sequence.
ACCESSION   DATAAS010000112 DATAAS010000000
VERSION     DATAAS010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2604)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2604)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2604
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106798"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(169..1413)
                     /locus_tag="VHF08_01810"
     CDS             complement(169..1413)
                     /locus_tag="VHF08_01810"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2067414.1"
                     /translation="MKANVIHGDFNPCGGAERLSLTTMQALIEMGIDFDLTTLKSPDI
                     PKLENSYGKNLVSVMKSINKINVINIIEELRQQEEEDHEDYNYDITINTNGDAAPYYH
                     SSFSKDNAITYCHFPSTKYHIESENIDYLKTDLGMTERSNVFSDNKDHEDISSPKNCK
                     TKIQFSKRKEYFEILKYGYWNLMRNSTVITNSEFSRRAIVNTFGLDNIYILSPPIDIE
                     TFRNVALMANGDDERKDIILVISRIAPHKKIENAIKLAKILKDNNIGKGMKIVGNLYY
                     YFFDYYSEIKQMVLGLGLTDYITFEINASLDKLLSIIRESRVYFHPMVGEHFGMAVLE
                     AMAAGLIPVVPNEGGLTEFVPQEYQFNTIEQAAEIIMYVFNHLPKTERIKISDDINKF
                     LDSHYIKGFQTILNELLSRRRK"
     gene            complement(2223..2369)
                     /locus_tag="VHF08_01815"
     CDS             complement(2223..2369)
                     /locus_tag="VHF08_01815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067415.1"
                     /translation="MKLQYAYSMRIKIIKNYIQKMKNLSMDMKSSSSSNNKSRRHVNT
                     NIKN"
BASE COUNT          810 a          434 c          358 g         1002 t
ORIGIN      
        1 tagtagactt ctatttcttg agtatttgat gttgaatttg ttctaattta ctactagtat
       61 tgattatttt tattccatga ttctttaaac aacattcgtc tattgattga ttttgagatg
      121 tcacataaca ttcatttaaa aatgtaatgt ttacatcagt acacctcatt atttccttct
      181 tcgagataat aattcattta atatggtttg aaatccctta atatagtgag aatctaagaa
      241 tttatttata tcatcgctta tcttaattcg ctctgtcttt ggcaaatgat taaaaacata
      301 cattataatt tcagcagcct gttcgattgt attaaattga tattcttgtg gaacaaactc
      361 tgtaaggcca ccttcatttg gaaccactgg gattaatcca gcagccatag cttctaatac
      421 tgccatacca aaatgctctc ctaccattgg atgaaagtat actctggatt ctcgtatgat
      481 agaaagaagc ttatctaagc tagcattaat ttcaaatgta atatagtcag tcaaaccaag
      541 acctagaacc atctgcttaa tttctgagta ataatcaaaa aaataatagt aaagatttcc
      601 aacaattttc attcctttgc ctatattgtt atcttttaat atttttgcaa gcttgattgc
      661 attttcaatt ttcttgtgag gagcaattct ggatattaca agaatgatat cctttctttc
      721 atcatcgcca tttgccatta atgcaacatt acgaaaagtc tcaatatcta ttggtgggct
      781 gagtatgtaa atgttgtcta atccaaatgt attaactatt gccctgcgac tgaattcaga
      841 attggtaatc actgtagaat ttctcatcaa attccaatat ccatatttta atatttcaaa
      901 atattctttt cttttgctga actgaatctt ggttttgcaa ttttttggac tactgatatc
      961 ttcatggtcc ttattatctg aaaaaacatt tgacctttct gtcatgccaa gatctgtttt
     1021 tagataatca atattttcag attctatgtg gtattttgta ctaggaaagt ggcaataagt
     1081 aatagcatta tcttttgaaa aagatgaatg ataataagga gctgcatcac catttgtgtt
     1141 tattgtaata tcgtaattgt aatcttcatg atcttcttct tcttgttgcc gaagttcttc
     1201 tattatattt ataacattaa ttttgtttat gcttttcata actgagacaa gatttttgcc
     1261 atatgaattt tctaattttg gtatatcagg actcttcaag gttgtaaggt caaaatctat
     1321 tcccatttct attaatgcct gcatagttgt aagtgatagt ctttcggcac ccccacaggg
     1381 attaaaatct ccgtgtataa catttgcttt catatcaggc aacctgtcct gccaaggcca
     1441 aaccctgtcg ctatcttttt cctcgtgttt ttctccttct tcatcagttc acaaagtatt
     1501 tagagatgag cattacacaa gatggatctg taaagttaag agatcacttc catgttataa
     1561 tgatctatta aaaagatgga accaatttgt atatgcctca gtaacattca ttttttctgc
     1621 atggaagaat agtcaacaaa acattcagtt ctatctctgc tatattgtat atctctttta
     1681 tgatgctttt ctcataagag gaattaatat gatatctaat ttcagaaact tgcaagcttg
     1741 ttgataccag attttaccat cttttgaaac tgaatgtttg ccataacctt ctgaaagatt
     1801 ggatcggaaa cgttctgata taaacatatt tcgttctttt gatatactaa acccaagaat
     1861 ttccttattt gttgattcta tagcgatcta aagccaaata aattctgaac ctatctattt
     1921 acagtttcat caactatgaa tttagagtaa ctatcttact cgatgatcat ctattaacag
     1981 ttgttgcgtt tttggatggt tttacactaa atatgaatca acattgacaa gcttattgta
     2041 gcagctttgt ttcactctag gaaaatttat aaaataatat caacatcttg attctatact
     2101 gatgtagata tatggatata gactaatgta aaaccatata atatggtcaa agcatacagc
     2161 tttgcatgtc aaacgtaaca aaacactcta tatgtcaatt ctgtctttta tgtcaaaaaa
     2221 catcaatttt tgatgttggt attaacgtgt cgccttgact tgttattact actactactg
     2281 cttttcatat ccatgctcaa atttttcatt ttttgaatgt aattcttgat tatttttatt
     2341 ctcatgctgt aagcatattg caacttcata tatttatcat acacgaaata gttttattct
     2401 ttttaaattc agtttattta atacacatgt ctatgagctt acattatagt gtaatttctt
     2461 taatgaatca agtgaataag cttccaatag atattggata ttatatcaag tttccaacat
     2521 ttcaagtcaa tgaaatctaa ctatcaaaga gtatatcagt tagtcaaata tcgtcagagc
     2581 aattcatctg tactaatgat gacc
//
LOCUS       DATAAS010000113         1838 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2805635, whole genome shotgun sequence.
ACCESSION   DATAAS010000113 DATAAS010000000
VERSION     DATAAS010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2805635"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(420..1337)
                     /locus_tag="VHF08_01820"
     CDS             complement(420..1337)
                     /locus_tag="VHF08_01820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate--CoA ligase subunit alpha"
                     /protein_id="HEX2067416.1"
                     /translation="MNKKFDIFDILIGDTADKDFEKKAVIIQGITGSYGSTHTRLMKS
                     YGTNIVAGVTPGKGGQNFEGIPIYNNMAEAVKSTGAKISGMFVPAPYFLTAAKDALDN
                     GIKLLVAIPEHVPIRDSITIVEYAMSKDAKMIGPNTPGVIVPGIIKVGIMPAQPFKAG
                     NTIVFSRSGTLMYEVSYNLTKAGFGQRLCLGIGGDPINGTNLIEAFDMVKDRDDVDSI
                     VVVGEIGGDAEELLADYLITMNYSKPVVAYIAGRSAPKERRMGHAGAIVYGNYGSAES
                     KVKNYARANVEVAKKPTEVPQLLSKKIHR"
     gene            complement(1334..>1838)
                     /locus_tag="VHF08_01825"
     CDS             complement(1334..>1838)
                     /locus_tag="VHF08_01825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="succinyl-CoA synthetase subunit beta"
                     /protein_id="HEX2067417.1"
                     /translation="ATFRHPDLKKYEYISELEAQAQKSGFSLVELNGNIAIIGNGAGL
                     VMSTLDMVSDAGGKAGSFLDFGGRATTETIYEALKVISGLKNIDAILVNLFGGIVKTN
                     LVAQAILDAYNNGILRVPVFARISGAESEIAKEMLKGSYAKLYDTVEEAIHAAVEEVT
                     KKDKIQK"
BASE COUNT          528 a          390 c          275 g          645 t
ORIGIN      
        1 atatatctat aacagaaatg tcgttctgtt agcaacatca ctcctttatt gcaattgtat
       61 aaatggattt agcagcggcg ataaggtttt attattgcaa atccgatata tattaagatt
      121 ggaccgttgt ccaaaatgcc aacgtaaaaa tattgttaac ctgcatttgc aaataaattg
      181 taattcatgt ggttattctt acataaaaaa aaattgcccc aaatgtactt ctgtgattgg
      241 caatttagat tacagtaaaa gagacatagg acaatgggta ggttgtttta cttgtcggtc
      301 gtgtagaact acatacactg acgtcattaa tgtttaaaag cagagtttag aattttatat
      361 acgataatat caaccgtctg actccttacc attataattc tattattatc gataagaaat
      421 tatctatgaa tcttctttga tagtaattgt ggtacctctg ttggcttttt tgcaacttcg
      481 acattggctc ttgcgtaatt ctttacttta gattctgctg aaccatagtt tccgtatact
      541 atggcaccag cgtgtcccat tctcctttct tttggggcag atctacctgc aatatatgcc
      601 accacaggtt tagaataatt catagttatc aaataatctg ctagtagctc ttccgcatct
      661 cctccaatct ctcccactac tactattgaa tcaacgtcat ctctatcttt aaccatatca
      721 aaagcttcaa tcaaattagt tccgttgatt ggatccccac cgatgcccag acacagtctt
      781 tgtccaaaac ccgctttagt caaattgtaa gatacctcat acattaacgt tccgcttctc
      841 gaaaatacta ttgtatttcc tgctttgaag ggctgagcag gcatgatacc aacttttatt
      901 attccaggta caatcacacc tggtgtattt ggtcctatca tttttgcatc tttactcata
      961 gcatattcta caatcgtgat ggaatctctg atagggacat gttcaggaat ggcgactaat
     1021 aattttattc cattatccaa ggcatccttt gcagcagtga gaaaatatgg tgcaggaaca
     1081 aacattccag atattttggc acctgtagat ttaactgctt cagccatatt attataaatt
     1141 ggaattcctt caaagttctg gcctcctttt ccaggggtta ctcctgcaac aatattagtc
     1201 ccgtaagatt tcatcagtct tgtgtgtgta gaaccatagc ttcctgttat tccttgaatt
     1261 atgacagcct ttttttcgaa atctttatca gctgtatctc caatcaaaat gtcaaatata
     1321 tcaaattttt tattcatttc tgtatcttat ccttttttgt aacctcttct actgcggcat
     1381 gtattgcttc ttcgactgtg tcatataatt tggcataact tccctttaac atttctttag
     1441 caatctcaga ttctgctcca gaaattctcg caaatactgg aacacgtaga ataccattgt
     1501 tatatgcgtc taatattgcc tgggccacaa gattcgtttt tactatccct ccaaagagat
     1561 ttactaaaat agcatcaata ttttttagtc cgcttatcac ttttaacgct tcataaatcg
     1621 tttcagtagt agctctacca ccaaaatcaa gaaaagagcc tgctttacca cctgcgtctg
     1681 aaaccatatc tagcgtcgac attacaagtc cagcgccatt acctattatt gctatatttc
     1741 catttaattc taccaaagaa aacccactct tctgcgcttg tgcttctaat tccgaaatat
     1801 attcatactt tttcaaatct ggatgcctaa aagttgcg
//
LOCUS       DATAAS010000114         1642 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_107813, whole genome shotgun sequence.
ACCESSION   DATAAS010000114 DATAAS010000000
VERSION     DATAAS010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1642)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1642)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1642
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_107813"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            564..1109
                     /locus_tag="VHF08_01830"
     CDS             564..1109
                     /locus_tag="VHF08_01830"
                     /EC_number="3.6.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEX2067418.1"
                     /translation="MKNVIKIINSKRIYSGNISLRLDRFNLNNKIIEKEIVEHQPSIG
                     LIPVIDETDILFVIQYRHAVGKNILEIPAGKIEKGETPKQTALREMREEIGYTGKLSP
                     VMKWYLAPGYDTELMHIFIATNLKKIKKRKADLDDDENIVVRRIKFTSAIKKCINGEI
                     QDAKTVAALLVYAKVLEAKRI"
BASE COUNT          609 a          239 c          255 g          539 t
ORIGIN      
        1 ccatattaat agatagatgg atataaatac ttcataatct attctagatt tttcagctag
       61 tcaattaaaa tatattatta ttttgaaaga atatccagtt aaacaagaga tgtcctacat
      121 tcgcaggcaa aacaaaatta aaagaccaat caacttaaaa tgcttatctt ttggtaataa
      181 ttatcatttt ctcattttaa tattataata tgttattatc tagattatgt tatatatatc
      241 aaaataatat tgcaattcta tttaattata tgtgatattt ttaagaatag taaagtttta
      301 gccttgatga taataacgtt ataatatcca actccatgta cttccaagac aatatataaa
      361 aatgtataag agttgaaaca tttatgcaag cagattgatg aatagttaat gaattaaaat
      421 caatagaaag gctttaagca tctggtggat gtcacaaaac attaggttat tgactctctt
      481 ttcataagtc atatgtttaa gatatgaaaa ctaaataata ccaatacctt taagcgtcga
      541 gtaaaataaa aaatgaaagg taaatgaaga atgtaatcaa aataataaat agtaaaagaa
      601 tttattcagg taacatctca cttaggctag acaggttcaa tttaaataat aagataattg
      661 aaaaagaaat agtagaacat caaccctcta tagggttgat tcctgttatt gatgagacag
      721 acatactttt tgtgatacag tatcggcatg cggtaggaaa aaatatttta gaaatacctg
      781 caggaaaaat agaaaaaggc gaaacgccca agcagacggc tcttagagaa atgagagaag
      841 aaattggtta cactggtaag ttatcaccag taatgaaatg gtacttggcg cctggatatg
      901 acaccgaact aatgcacata tttattgcaa caaatttaaa aaagataaag aaaagaaaag
      961 cagatcttga tgacgatgaa aacatcgtag ttagacgcat taaatttact tctgcaatca
     1021 aaaaatgcat taatggagaa attcaagacg ctaagacagt ggcagcactc cttgtttatg
     1081 caaaagtatt agaagctaaa cgcatatgaa tgtaataaat agtgttctat aattagtctg
     1141 agcgaattgg atcatacact tttccttcca tcctcagata ggcaatttct cttgtttatt
     1201 aatctctgtt gtttaaatta tatattgcac gttgtacagt cattcttgtt aattaccaag
     1261 atatccattc tacttgattg aatggatgct tagtcttaga taatgataat tttacagccg
     1321 gcctcctttc gagtttttat gcaaatatga atgattaata ccgtatttga gagaaaccta
     1381 ttatgtgaga tttaatctag gccgtaccat ctgcagagat ttccgataga ctttaacacg
     1441 tttcccaaat tctgctaata aagcacattg ttgtggtcta aatggagatt ctaatatggg
     1501 agttacttgt agtttactcg gcaatgaatg tgcgcctaaa aagttccgct ttatgaaagt
     1561 tctcttacta taaattccac catctatacc tccatttact tattaacaat aatctttttt
     1621 tgctctatgt tcagatcata ca
//
LOCUS       DATAAS010000115         1654 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_108526, whole genome shotgun sequence.
ACCESSION   DATAAS010000115 DATAAS010000000
VERSION     DATAAS010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108526"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            302..1150
                     /locus_tag="VHF08_01835"
     CDS             302..1150
                     /locus_tag="VHF08_01835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067419.1"
                     /translation="MIVLIYYYDYYSLISSSIQKLDKFGIKKIYPTIEGGREWFVNMD
                     NPFADNLFYSTFHRNITRQDDGSWRIGGSAVRLNVITPPDSKLWKNIEITGYAKIVGT
                     ISSSANTNNNKGSEDEEESQNYSKDLSWRGRGGRHNSKNPCEGTALIGTIYINGNVRW
                     QKEIWHTGGYTDARATYNVTDSILDRWIGWKVVMYNINNDAAVKMESYLDDKNNNNWT
                     KVTDVIDNGGWYARSSDKEFYSAGCDRPKDYIITNGGPIVTFRADGIVLDFKNLSVRE
                     IRSPDM"
     gene            1424..>1654
                     /locus_tag="VHF08_01840"
     CDS             1424..>1654
                     /locus_tag="VHF08_01840"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEX2067420.1"
                     /translation="MTVTIVFSPIMTFSQLLDIQQENNNSSGINKVVILTFGNAPKSQ
                     YTEAKPILDKYGFKASFFVVCNWISNSDEDNSH"
BASE COUNT          580 a          222 c          302 g          550 t
ORIGIN      
        1 actttatttt taatattttt tgcattgtat gcatgcttgc tcaacgagtc acataatcaa
       61 agatagcagt tgataaaacg aagatcatta caacatattt tgcactaatt aggcaatagt
      121 gtgaatattt gcttatacat ttgataaagc ctaaaagtga tgcagctgat tctcaaaata
      181 aaaggaaaat gaggaataat ttatagagag atgctctttc tctctctcct tgtaatacaa
      241 taaaaaatga agagtatcat ggctagttat tggtattagt attttcgcaa ttgttatcac
      301 tatgattgtt ttaatatatt attatgatta ttattcttta atatcatcat ccatccaaaa
      361 gctagataaa tttggaataa agaaaatcta tccaacgata gaaggcggaa gagaatggtt
      421 tgttaacatg gataatccat ttgctgataa cttattttat agcacatttc atcgtaacat
      481 aactaggcaa gatgatggtt catggcgcat aggtggatct gctgttagat taaatgttat
      541 tacgccacca gactctaaac tgtggaagaa tatagagatt acaggatatg ctaaaatagt
      601 aggaacaatt tcctcctctg ccaacactaa caataataaa ggtagcgaag atgaggaaga
      661 aagtcaaaat tattctaaag atctctcttg gaggggtaga ggcggaagac ataacagtaa
      721 aaatccatgc gaaggtaccg ctctaatagg aacaatttat atcaatggta atgtgagatg
      781 gcaaaaagag atatggcata ctggcggata tacagatgct agagctacat acaatgttac
      841 ggattctatt ctcgatagat ggattggttg gaaagtagtg atgtacaata taaacaatga
      901 tgcagcagta aaaatggaat catatctaga tgataaaaat aacaataatt ggacaaaagt
      961 aacagatgtt attgataatg gtggttggta tgctagaagt tctgataaag aattttatag
     1021 tgctggttgt gatagaccaa aggactacat tataactaat ggtggtccta tagttacatt
     1081 cagagcagat ggtattgtat tggattttaa gaacttgagt gtaagggaga tacgatctcc
     1141 tgacatgtaa gaactgttta tgcatattaa atatcgtcta taattaaatt gattaaagca
     1201 gattggtaaa agaaatgaaa ataagcgagt atggtactga ggtcatatcc ttcttttcag
     1261 agtcatttct tatttttttc tctcttccct gtatttataa aactgtgtta tcttgcttat
     1321 tgttattgtc caatatttaa atagtctact ctttgctgta tattttatgt taaaaattat
     1381 aggatgtttt tcttgtgatt ctgcttgggt tattattaca tttttgactg ttacaattgt
     1441 attttcacca attatgacct ttagccaatt attagatatt caacaagaaa ataataatag
     1501 cagtggtatt aacaaagtag ttattctaac ttttggcaat gcaccaaaaa gccaatatac
     1561 cgaagccaaa ccaattttag acaaatatgg atttaaggcc agtttctttg tggtatgcaa
     1621 ctggatttca aattcagatg aagataactc acat
//
LOCUS       DATAAS010000116         2480 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1226831, whole genome shotgun sequence.
ACCESSION   DATAAS010000116 DATAAS010000000
VERSION     DATAAS010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2480)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2480)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2480
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1226831"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..302
                     /locus_tag="VHF08_01845"
     CDS             <1..302
                     /locus_tag="VHF08_01845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067421.1"
                     /translation="SLNLEESKRLDITIRNLSLGVGALDDNHALPLQRINAYQPPSPL
                     YIMILLMLTNENDMFMVGKLLIDGYVPLFHSQRLLLFYHFYNICLYIFAKIMLVE"
     gene            complement(914..1462)
                     /locus_tag="VHF08_01850"
     CDS             complement(914..1462)
                     /locus_tag="VHF08_01850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067422.1"
                     /translation="MHSPLWLENPTISVILLGIAFCLLYKSLTTEKRHRKHQHSNHYN
                     VERELFGHKIVDTNKGWLLFTSFVGLAALGTHYLAENTFHVYDVTPVDRFTHGLSGMA
                     VTAIILNLYLTKKREFYYIVSIGASWIAFILWEVFELIYIAYSGPSGFIQSDAWDIVI
                     DLWIDSLGALSICFLYDEFTEK"
     gene            complement(1811..2041)
                     /locus_tag="VHF08_01855"
     CDS             complement(1811..2041)
                     /locus_tag="VHF08_01855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067423.1"
                     /translation="MNKGYLSRTLIVVGSILIIAGLVFTAQSKSIVGPQSSFMYSNPE
                     WTVNGFLISGVGLAILASGIILWIFNKINVLK"
     gene            2182..>2480
                     /locus_tag="VHF08_01860"
     CDS             2182..>2480
                     /locus_tag="VHF08_01860"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2067424.1"
                     /translation="MPGFRLAYGGLSDDSFTTYEVGEFTKIYLNLELYINNNNNQQDK
                     IKTRHFGRIIFHSEDIDRLYSYMKNNESISKMICFENEPTDAPWGERYFHIREPDG"
BASE COUNT          841 a          423 c          369 g          847 t
ORIGIN      
        1 tttctttaaa cttggaagag agtaaaagac tcgacataac gataagaaac cttagtttgg
       61 gcgttggcgc attagatgat aatcacgctc ttcctcttca gcggataaat gcttaccagc
      121 ctccttcacc tttatatata atgatattat taatgcttac caatgaaaat gatatgttta
      181 tggtaggcaa attattgatt gatggatatg tccctttatt tcatagtcag agattactgc
      241 tgttttatca tttttataat atatgtctat atatttttgc taagataatg ttggtagaat
      301 aaattttagc gttttcgatg agtaattcat tctaaagaat atctaaaata catatacatc
      361 atattgatta tactctttta taccaactac tacaaatctc attattaaaa taaatatttt
      421 aatattcgaa gatattttta tatatcccat tgattcataa cttgaatcaa ctattttaag
      481 tattatcttt ctgcttatta gtaacatttt cctttgtgcc gcttattggc atagttctac
      541 gaactattaa tttattatac cttgatatta tacttcacat gaaattagct gtcatgtaat
      601 gattgtgtat tttaaattag atgtctaaca agtttttact gctacgcact aaagtccaca
      661 gctttttata atttgcctaa ttgagccttt tttcttctct atgaaaagta acaaccactg
      721 tcaaagattg agttctatct tctttatgta tttgatagtt cttatttaat aatacttctt
      781 tctttatccc tcctttcttt tcaacataaa gagatagatg aaaaatctat cccaagctct
      841 agtcatattg ttaagtaaat agagccaaca attataataa cagttcacag gcgttgagag
      901 tccgccgttt caactatttt tcagtaaatt catcgtagag gaaacatatt gataaagcac
      961 ccaaagaatc tatccataaa tctatgacaa tgtcccacgc atcggattga ataaatccac
     1021 ttggcccgct atatgctatg tatatcaatt caaacacttc ccagagaata aatgcaatcc
     1081 acgacgcgcc tatgctgacg atatagtaga attctctctt ttttgtcaag tatagattaa
     1141 gaataattgc agtcactgcc atcccagaaa gtccatgtgt aaagcgatca acaggagtta
     1201 cgtcatacac atgaaatgtg ttttctgcca gatagtgagt cccaagtgct gctaatccta
     1261 caaaagatgt gaataataac caccctttgt ttgtatccac gattttgtgt ccaaataatt
     1321 ctctttctac attgtagtgg ttactatgtt gatgtttgcg atggcgcttc tctgtagtca
     1381 gagatttata aagcagacaa aatgcaatac caagtagtat cactgaaatt gtaggatttt
     1441 cgagccataa gggactatgc attactatac gtgcatgttg gctggttaaa gaggtaattt
     1501 aatctattaa tgagcaaaat tacttgatgc tttcttcatc gaaaaatgtt ctcctacgta
     1561 agcgcagaac ttctcagata ccatctttat acataatggt atctacttgt ctgatttact
     1621 ccttcaaaag ctgcctataa tactcattgc ttctataatt caacgaatat cttctcttat
     1681 acaagcatat gcatcatcaa gtactcagcc atcaatattt tcaaagactt tcggtataat
     1741 tatcttttga caagaaatgg agcaaaagaa tcatttgaaa tgatagcagt acagcaatat
     1801 aaaaattaag ttatttcaat acattaatct tattaaaaat ccaaagtata attccagaag
     1861 ccaagatagc taaacctact ccagaaatca aaaaaccgtt gacagtccat tcgggattgc
     1921 tatacataaa ggaagattgt ggacctacaa tcgatttact ttgtgctgta aatactaatc
     1981 cggctataat cagtatagac ccaacaacaa ttaatgttct actaagatat cccttattca
     2041 tatatcgtta tctctgttat tatatggtgg agtatttgta gaataataac ttagatataa
     2101 taggtaatga aagtatacaa aatatctgca ataacattat taattaaaaa catggagaga
     2161 tcttgcagat tttattctaa aatgccaggt tttcggttag catacggtgg tctatctgat
     2221 gattccttta ccacatatga ggtcggtgaa tttacaaaga tatatctcaa cctagaatta
     2281 tatattaata acaataataa tcaacaggat aaaatcaaaa caagacattt tggcagaata
     2341 atctttcata gtgaagacat agatagacta tattcgtata tgaagaataa cgaaagcatc
     2401 tcaaagatga tatgttttga aaatgaacct acagatgctc catggggtga aaggtacttc
     2461 catatacgag agccagatgg
//
LOCUS       DATAAS010000117         1791 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_108631, whole genome shotgun sequence.
ACCESSION   DATAAS010000117 DATAAS010000000
VERSION     DATAAS010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1791
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108631"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..230
                     /locus_tag="VHF08_01865"
     CDS             <1..230
                     /locus_tag="VHF08_01865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067425.1"
                     /translation="LVGALGAFLFINFIRTRRMLKRSGIDMKGLFKSLSSVSSPSSYG
                     YNPLKYYCMGCGKEHKEIACPNCGSKMKRVG"
     gene            758..1198
                     /locus_tag="VHF08_01870"
     CDS             758..1198
                     /locus_tag="VHF08_01870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2067426.1"
                     /translation="MSADNSNSTVATPTTNNINNMNSNRVKRILIVDDEQDIISVFKM
                     VLEMNDFEVDAYNDPLLALSNFKQNAYDLVILDIRMPDMDGFELYKKIRMVDDKVKVC
                     FMTAFDDYRQEFKKSFPMLDEIKCFIRKPNAIEDLVNHVATILG"
BASE COUNT          675 a          245 c          294 g          577 t
ORIGIN      
        1 ctttggttgg agcactggga gctttcttat tcataaactt cattagaaca agaagaatgt
       61 tgaaaaggtc aggtatcgat atgaaaggat tgtttaagtc attatcctct gtttcttcgc
      121 cttcatcgta tggatataat ccactaaaat actattgtat gggctgtgga aaagaacata
      181 aagaaattgc ttgtcctaat tgtggttcaa agatgaaaag agtaggataa aggaacagta
      241 agcatgcttc ctaaatcagt aggtgtgtgt ggatattgct aaacgctcag ggatttctat
      301 attttgattg aattctacat aacaacaata taacatcaat agttattatt gaaatagtta
      361 aaaaattgtt ggaaggcatc taattatatt tctaaatgaa ggaattatct attggtgtat
      421 acaagaatca tcatcttatt tgagcagcaa ttatcagcag cagcaggtgt gtctctcttc
      481 aagaagtaaa gatctactac aatttttact atggtagtgt ataactttac atctagtaaa
      541 tcatccgatc tctacaaatt tctataaaac gccagaatat atcaaaagat aaactcgaag
      601 tcctagaaga acaatataaa aacataaaga caaacagggt gctacttaat aacaatatag
      661 gccttttttg gaaaggaggg tagatgtata taagaactaa attccctaaa acttaattat
      721 atagtcaaga cattctaata gtattacaca tacaaagatg tctgctgata atagtaatag
      781 tactgttgct actcccacta ctaataatat taataatatg aactccaaca gagtaaagag
      841 aatcctaatt gtagatgatg aacaagatat aatctcagtc ttcaagatgg ttttagaaat
      901 gaatgacttt gaagttgatg cctataacga ccctttatta gcattatcta acttcaaaca
      961 aaatgcatat gatctagtaa tattagacat tagaatgcca gatatggatg gatttgaatt
     1021 atataaaaaa ataaggatgg ttgatgataa agtcaaggtt tgctttatga cagcctttga
     1081 tgattatcgt caagagttta aaaaatcatt tccaatgctt gatgagataa aatgctttat
     1141 tagaaaacca aatgcaatag aagatctggt aaatcatgta gcaacaattc taggctagaa
     1201 taaccacata cactcaagtt gttgaagaag ataaactagg atttaagatg tggtggataa
     1261 aatcaaactt gacatctaag gatttaaaga acaaaatgaa tatatttaaa gataataata
     1321 ataagttgac aatacacaat aaaaacaaat attcgatata actacgatat taattatgtt
     1381 gtttccaact attagtagat ttacagcaag tgatttaaaa atataaaaga tctttttaat
     1441 caagtgataa ggaatagaat gctattccaa gaattgctgc gactgccgat acatttaatg
     1501 aatatttttt tcttatcaat agaggtactg acatggtttt aatttatcct ttgctgagtt
     1561 gaacatagca atactgcaag tatatatgta actcagataa caatctaagc ggaactttat
     1621 ggtctctcag tacagacatt cattttgaaa agatattttc tttagatata acaaatagtt
     1681 tttaagaata aaaaattgta gatgtattca tagatatgct tgttttttgc tattagccgg
     1741 tactatttcc accaatagtc gtcattgttt aagatgcacc cgatatctga c
//
LOCUS       DATAAS010000118         4840 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4970529, whole genome shotgun sequence.
ACCESSION   DATAAS010000118 DATAAS010000000
VERSION     DATAAS010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4840)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4840)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4840
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4970529"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..251
                     /locus_tag="VHF08_01875"
     CDS             <1..251
                     /locus_tag="VHF08_01875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067427.1"
                     /translation="EQSNHAVMSVLHYTNVLSVLIACTAEYRIIIADISKEVIRDSTT
                     TINIHQSYLIEFFCLHAALLRVIYITIITPIMALLISQ"
     gene            complement(372..836)
                     /locus_tag="VHF08_01880"
     CDS             complement(372..836)
                     /locus_tag="VHF08_01880"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX2067428.1"
                     /translation="MPTSISEIMTQKLETIDPSNTAQEAAKKMADKNVSSLVVIDRAD
                     KPIGIITERDLVRQVCVNDASSSTVIIHHIMSSPLVTIDANSSVEAAADVMIQNKVRH
                     LLVVMENGNKTLGIITPTNFTTYLKKNLNMDDVNARILQSLAEEEGTEGFSY"
     gene            complement(1026..2159)
                     /locus_tag="VHF08_01885"
     CDS             complement(1026..2159)
                     /locus_tag="VHF08_01885"
                     /inference="COORDINATES: protein motif:HMM:NF027889.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp1/GlmU family protein"
                     /protein_id="HEX2067429.1"
                     /translation="MPEHCISPWVYLVKGPATVTLAGTAYVLGKDVSNSEVLVGAGKI
                     LPFEIDSLCQININLDEGGESWLADQYGAGTTMWQEIVNKILIEKFRTILLIGDTDTG
                     KSSLATFIVNLALKKNLKPAVIDADMGQGDLAPPTAIGGTIIENPITDLRNLDAQIYE
                     FIGNTSPVGFEDVTINAIRQIVKKIAIDSDICIINTDGYIHNNGIDYKVKMAKKLRSD
                     LVVCLGEKSIFESFRSKYTSLVLHNKGPTKIVKSRIERNQRRLNQFLRYIDDNNKYIH
                     KNVTIGIKSIKIVYRGITYSKIVKDKYGLLHLGKYIRIKPWNLQGMFIGLGFKEDIVG
                     FGIIKYASAYKISIETKINYFNKVYLSHSGITKDRTLEFRIFI"
     gene            complement(2681..3502)
                     /locus_tag="VHF08_01890"
     CDS             complement(2681..3502)
                     /locus_tag="VHF08_01890"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2067430.1"
                     /translation="MLNIGSDIIIIIDCHVHLNHYAYTNKLSLEERLTALLDVMATNN
                     IDYSIILSSYKVNVDRPSTAQILDITKKHDNLGVVAGLSIDNHTDEDYRNCRIWLKEG
                     LLKGVKLYCGYEHYYPFDKRYQRVYDMCMEFKVPVMIHTGDTFSSKGKIRFSHPLNID
                     DVAVDNPDLKIVMCHLGNPYILDCQEILYKNKNVYADISGLVFGNFTVHSKKYMVNKV
                     TELLNYAGEPHYLLYGTDWPISNMSSYLNFVEKLKLSSKIRDLVMFRNAKNLFRI"
     gene            complement(3486..4121)
                     /locus_tag="VHF08_01895"
     CDS             complement(3486..4121)
                     /locus_tag="VHF08_01895"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2067431.1"
                     /translation="MDNLRPAIIIRNIQQEDIPEIVALQKKSFPDVAAGMITAPSFLE
                     NHIHIFPEGQFCAEINERIVASACSLMISLKPEYAEHTWHDIVGDQKLTSHNPKGDSL
                     YADDISTLPDFRCLGIATMLYNMRKDLAIKLNLRRIIGGGRLIQFHKYADKMSALEYS
                     QKVIKGELKDPVLSFQLKNGFRFIKILPNYIQDSCSLNYASFIEWLNPKYR"
     gene            4449..4664
                     /locus_tag="VHF08_01900"
     CDS             4449..4664
                     /locus_tag="VHF08_01900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067432.1"
                     /translation="MCLLDLPFHSHLKPIASTSLVTVLSHVATVLDGPTSLPGGLRVC
                     THLPAGVIGPVKASAFAITFPGISARQ"
BASE COUNT         1529 a          854 c          739 g         1718 t
ORIGIN      
        1 ttgagcaatc taaccatgct gtgatgtctg tcttacatta taccaacgtg ctgtctgtgt
       61 taattgcttg tactgctgaa tataggataa ttattgccga tatatcaaaa gaagtgataa
      121 gagatagtac caccaccatc aacattcacc aatcttatct gatagaattt ttttgcttac
      181 atgctgcttt gttgcgggta atatacatca ctattattac accaattatg gctttattga
      241 tatcacaata actatactaa ttgtattggt tgatactgtg attatccata ctaaatagtg
      301 ggattaacta tttttctcta cgtattatta taagcaaatt atgctacatt tattatttct
      361 atatctggct tttagtagct aaaaccttct gttccttctt cttctgctag agactgcaat
      421 attcttgcat taacatcatc catattcaag tttttcttaa gataggttgt aaaattagta
      481 ggagtaataa ttcctaatgt tttgttccca ttttccataa caacaagtaa atgccgcact
      541 ttattttgaa tcattacatc agcagctgct tcaactgatg aattagcatc aatagtaaca
      601 agaggagaag acataatatg atgtattatg acagtactgc tgcttgcatc attaacgcat
      661 acttgtctaa ccaaatcacg ctctgttatt attcctatag gtttatctgc tctatcaata
      721 actactaatg aacttacatt cttatctgcc attttctttg ctgcttcttg tgctgtatta
      781 gacggatcta tggtctctaa tttttgagtc attatctcac ttatcgatgt tggcatagta
      841 actacacttg gtttttatgg tattataaaa tagcggtaat atatgcaatg ccaagaaata
      901 tatatattat gatagagtct agagatattt tcaatctctc atttaaacac atatatagat
      961 tataattata catttgaaaa tgcaaagtgg tgaagcatga acttgataac tgttttgtcg
     1021 attcttcaaa taaatattct aaattctaga gtcctgtctt ttgttattcc agaatgactg
     1081 agataaacct tgttaaagta attaattttt gtctcgatag atattttata ggcagaggca
     1141 tattttataa taccaaatcc tacaatatct tctttaaacc ctaatcctat aaacatgcct
     1201 tgaaggttcc atggttttat tcgaatatat ttacctaaat gtaaaagacc atatttgtcc
     1261 ttcactattt tagaataagt tatacctcta tatacaattt tgatgctctt tattcctatg
     1321 gtaacatttt tatgaatata tttattatta tcatcaatat agcgaagaaa ttgatttaac
     1381 cttcgctgat tgcgttcaat tctacttttt acgatcttag tagggccttt gttatgtaaa
     1441 acaagagaag tatatttcga tctaaaactt tcgaatatac ttttctcacc aagacataca
     1501 actaaatctg atcgtaactt ttttgccatc tttactttgt aatcgatacc gttattgtgt
     1561 atataaccgt cggtattaat tatgcaaata tcagaatcaa ttgcaatttt tttaacaatt
     1621 tgtctgatgg cattaattgt gacatcttca aatccaactg gactggtatt tccaataaat
     1681 tcatagattt gggcatctaa atttcttaga tctgttatcg gattttcgat tattgtgcct
     1741 cctatggcag taggtggtgc taaatctcct tgccccatat ctgcgtcaat aactgctggt
     1801 ttaaggtttt ttttaagtgc caaatttaca ataaaggttg ctagtgagga ctttcctgta
     1861 tcggtatcac ctatcaataa aattgttcta aatttttcaa ttaaaatctt attaacgatc
     1921 tcttgccaca ttgttgtacc agcaccatat tgatctgcga gccaactttc gccaccttcg
     1981 tctaagttta tgttaatttg gcaaagagaa tcaatctcaa atggtaaaat cttaccagct
     2041 cctactaaca cttcactatt agagacgtct tttcctaaaa cataagcagt acctgctaaa
     2101 gttactgtag caggcccttt taccaagtaa acccacggag atatgcaatg ctcaggcaag
     2161 ttctgtatgt atatgttttg tgagaaagat ttagaaaggt atcagataaa gtcaaacttt
     2221 tttcttactt tcttctaaag atatactgta gagatgtaag acctgctgtt ctcaggatta
     2281 gatcttgata gagtatttaa catgcaaaca aaaaatagta gaataatatt tacaattaaa
     2341 taatgaaata ttgcttttga ataagataga acctgtctat taattaatga atgctttgaa
     2401 ttttgtgaca aagtacctct ctatctccta ttcatatcac tagtttggaa cgctccaatt
     2461 atgagacctt tttgtatttg tatttcgata ggattatgca ttaatattta ttttagtatt
     2521 ataagtgcaa tgttatttag gggataacga ttcaatgaaa ctggaataat tcagtaagct
     2581 atgttggaat gcggtatctt ggctaataat taatgattca ataatatcat ttttgataaa
     2641 ttcatcttaa aagaggaaga gaaatacata tataataaat ttaaattcta aaaagattct
     2701 ttgcatttct aaacattaca agatctctta ttttggaact gagcttaagt ttttcaacaa
     2761 aattaagata agaactcata ttagaaattg gccaatctgt tccatataaa agataatgtg
     2821 gttcaccggc ataattcaat agctctgtca ctttgttaac catatatttt ttggaatgta
     2881 cagtaaaatt gccaaaaacc aatcctgaaa tatccgcata gacattcttg ttcttataca
     2941 ggatttcctg acaatcaagg atataggggt tacctaaatg acacataact atctttaaat
     3001 caggattgtc gacagcaaca tcatctatat tcaatggatg tgaaaatcta atcttacctt
     3061 tacttgaaaa tgtatcgcca gtatgaatca taactggaac tttaaattcc atacacatat
     3121 catatactct ttgatatctt ttatcaaatg ggtagtaatg ttcatagcca cagtaaagct
     3181 tgacaccttt aagtaaaccc tctttcaacc atattctaca atttcgataa tcttcatcgg
     3241 tatgattatc aattgaaagc ccggccacaa ctccaagatt atcatgtttt tttgtaatat
     3301 caagaatttg agctgtagaa ggtctatcca cattaacctt ataagacgat agaataatag
     3361 aataatcaat attgtttgta gccatgacat ctagtaatgc tgttaatctt tcttctagtg
     3421 aaagtttgtt tgtatacgca taatgattaa gatgtacatg acaatctata atgataataa
     3481 tatcactacc gatatttagg atttaaccat tcaatgaaac tggcataatt cagtgagcaa
     3541 gaatcttgaa tataattagg tagtatttta ataaatctaa atccgttttt taactgaaat
     3601 gaaaggacag ggtcttttag ttctcctttt attacctttt gtgaatattc taaagctgac
     3661 attttatctg cgtatttatg aaattggatc agtctacctc cgcctattat tctccttaaa
     3721 ttcaatttta tggctaaatc ctttctcata ttataaagca ttgttgctat cccaagacat
     3781 ctaaaatcag gaagagttga gatatcatct gcataaagac tatcgccttt aggattatga
     3841 cttgtgagtt tttgatctcc aacgatgtca tgccatgtat gctctgcata ttcaggtttt
     3901 agtgagatca ttaaactgca tgcagatgca actattcttt catttatttc tgcacaaaac
     3961 tgaccttcag gaaatatgtg aatatgattt tcgagaaagg acggggccgt tatcattcca
     4021 gctgccacat caggaaatga ttttttttgt aaagcgacta tttcaggtat atcttcctgt
     4081 tgaatatttc taatgataat tgctggccgt agattatcca atattctgac atatccaaaa
     4141 gttctctgat ataaaaggta tatagcagag agatccaaag aaaggcttcc tgaataagac
     4201 tattcatatt atctctctat acaatatatc caccagcatg agcaatagca gcagagagga
     4261 attagaggag gagaagtgtc ctctggtgct ctctctggag gataatagat agtaagctct
     4321 cttgtccatc cctttagaaa tcaataataa attgattaac aataataatt tcgcttgact
     4381 gttctgtcac atacttcata ataaccaata agagaaagag tattcatggt ccactccagt
     4441 cgaaaggaat gtgcttgcta gatctaccat tccattccca tttgaagccc attgcatcca
     4501 cttcgttagt tactgttctc tcccatgttg caactgtact tgacggtcct acttcacttc
     4561 caggcgggtt aagggtttgt actcatttac cagctggagt cataggtcca gttaaggctt
     4621 cagccttcgc aatcaccttt cctggtatct ctgcacgcca ataagaaagg tcatctgcga
     4681 cttcaaattt aattagagca aagtccacgc acatctccaa cgagctttgc gaattcagcc
     4741 gtgaacccac ctgccttgcc gctgaaaatc atctgcagag cttctcgctg ctgttgatta
     4801 gctcgctcgt cgaaaaagag agcaatagtt actttcattt
//
LOCUS       DATAAS010000119         3406 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_109803, whole genome shotgun sequence.
ACCESSION   DATAAS010000119 DATAAS010000000
VERSION     DATAAS010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3406)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3406)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3406
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_109803"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(520..3267)
                     /locus_tag="VHF08_01905"
     CDS             complement(520..3267)
                     /locus_tag="VHF08_01905"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF020083.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX2067433.1"
                     /translation="MTLKETKAEPFVREIFLKEGFKSLTAIQKKAIPVISRKINSLLV
                     APTGSGKTEAAIIPIFTQLSNYTIHHSGKIKAIYITPLRALNNDVLRRIIKYAESLNL
                     RVQIRHGDTTTSIKRKILENPPDVLITTPESLAVILTSSKMLKALDCLEWVIIDEVHE
                     LVSNERGAHLSIGLERLQAASILPVIRIGLSATLGNLKEAARFISGVNRKCAILIDNS
                     LRIYDIDVKFIKGSLNNVAHFIIEYIRDSKIEGSILLFTNTRDEAEYIGTILKNQNYV
                     QVDVHHGSLSKDMREETETRLREGVAGIVVCTSSLELGLDIGSVELVIHYGSPRQVSK
                     LMQRIGRSRHRQRSSAKGLIVTNIADDEMEALAIIRRMKKGSIEEQSMHTGAFDVLAH
                     HLVGLAMQTRDPIRIETAFDLVTKAYPFRLITSNDLKECINLLDSNGIIRYNREEQSY
                     QRRIKAYKFYFENLSMIPHVLKFEVIDSINKRKIGSLDQQFVGDYGEKGNVFVLKGSQ
                     WRILAIDERRMLVNVEPLHGSAINIPYWVGEMIPVDFKTAEEVGAIRNEVSKNYIKIS
                     SSVIDETIKSLNIIPDSKNIVIENSNARNTVIIHSTFGSKVNNTIASLLSTIISSQLG
                     YLVETRSDAYRIMLSSTARIGKGHVERTLKEAYDTEAIIIASFTGTHNINWKVWMVAK
                     RFGMISREAIYDKKVARMIYDRYSKTPISKESIREIIHDKYDISQTEKIMHDIKNEVI
                     KIHWIETSDFSDLAKPILEHSAKFSATPLSIEKGVIELVKERLEKTKNKLICIRCGKW
                     ERTIETREIPGNLSCPTCRSRLITRTSSYDYDLPKIITKRLTGNKLSAEENHKFERAW
                     KVASLINNFGKRAAVVLAGYGIGADTAARILRNYIDEDEIYKSIYEAERQYVTTRGFW
                     D"
BASE COUNT          999 a          631 c          549 g         1227 t
ORIGIN      
        1 ggattaaagt aattggtgcc acagcaaata atggaagaga aggaaaagta gaactcacat
       61 taaagccaca ttcttccatt ataaaagtgg ggtaaaacaa tatagtaata tcatttttca
      121 tatctgtaat caattagggg ctaatgtttg agcaattcag aaataggctc atatttagaa
      181 aaactaggtt aaacaatatc aaactctatt gccaaatttc aatacaagca attttaccac
      241 ttggtcaaag tagctcaagt caatcgtaaa tgtgtaatgt gtgatatttc tcaatgtttc
      301 attgagtttt catttagtat aaaaaaggtt ttcagaacca aataatctag acaagaatta
      361 tagtgtcaac taaaaagtag ttcaactatt tttatatata aataatttct ttggtagtgc
      421 cgatcgtttt tattattcct acaatcaata taactagttt agcctttctt ctattgtaaa
      481 gattgcctat gtttgactct gtacataaag catatgtagt caatcccaaa aacctcgagt
      541 agttacatat tgtctttcag cttcatagat acttttgtat atttcatcct catctatata
      601 attacgaaga atgcgcgctg cggtgtctgc acctatccca taaccggcca gtacaacagc
      661 tgctcttttg ccaaaattat tgattagtga tgcaactttc catgcgcgct caaatttatg
      721 attttcctct gctgagagct tgttaccagt gagccttttt gtaataattt ttggtaaatc
      781 atagtcatat gatgatgttc ttgttataag tctagatctg catgtcgggc aggaaagatt
      841 tcctggaatt tctctggttt cgatggttct ttcccatttt ccacatcgga tgcaaatcag
      901 tttatttttg gttttttcta gtctttcttt tacaagttca attacacctt tttcaatgct
      961 taatggggta gcagagaact ttgcagaatg ttctaaaata ggttttgcta gatcggagaa
     1021 gtcgctagtt tcaatccaat gaattttgat tacctcgttt tttatgtcat gcattatttt
     1081 ttctgtttgg gaaatgtcat atttatcatg tattatctct cttattgatt ctttgcttat
     1141 cggagtttta gaatatctgt cataaatcat acgcgctact tttttgtcat atatcgcttc
     1201 tctgcttatc ataccgaatc tttttgccac catccaaacc ttccaattga tattgtgagt
     1261 gccggtaaag gaggcaatga taatagcttc agtgtcatat gcttctttaa gtgtcctctc
     1321 aacatgacct tttcctattc tagcagttga agagagcata attctgtatg catcagatct
     1381 tgtttctacc aagtatccaa gctgcgagga tattattgta gataatagag aagctattgt
     1441 attattgact tttgagccaa aagtagagtg tataatgact gtatttcttg cgtttgaatt
     1501 ttctattaca atatttttag aatccggaat aatatttaaa gacttgatag tctcatcaat
     1561 tacagaactg gaaatcttaa tgtaattctt ggatacttca ttacgaatag cgcctacttc
     1621 ttcagcggtc ttaaagtcta caggaatcat ctctcctacc caataaggga tattgattgc
     1681 actgccatgt aatggttcaa cattgactag cattctgcgt tcgtctattg caagtatgcg
     1741 ccattgcgaa ccttttaaga caaaaacatt tcctttctca ccatagtctc cgacaaattg
     1801 ctgatcaaga gatccaattt ttcttttgtt aattgaatct ataacctcaa attttagaac
     1861 atgcggaatc atagatagat tctcaaagta aaacttgtac gcctttatcc tgcgctgata
     1921 agattgttct tctctattgt atctaattat accattacta tcaagtaaat ttatgcattc
     1981 ttttaaatca ttagatgtga tcagacgaaa tggataggcc tttgttacca gatcaaaagc
     2041 agtttcaatt ctaatgggat ctcttgtttg catcgctaat cctactagat gatgagccaa
     2101 aacatcaaaa gcgcctgtat gcattgattg ttcttctatt gaaccttttt tcatccttcg
     2161 aataattgca agagcctcca tttcatcatc tgcaatgtta gttactatca aaccctttgc
     2221 agaacttctc tgtctatgcc tactacgacc aattctttgc atcaatttcg aaacttgcct
     2281 tggcgaaccg taatgtatta ccaattctac agagccaata tccaagccaa gttctaatga
     2341 tgaagtgcaa acaacaatgc cagccacgcc ctctcttagt ctagtctcag tctcttctct
     2401 catatctttt gacagagaac catggtgaac atccacttga acgtaatttt gattctttaa
     2461 aatagtgcca atgtattctg cttcatctct tgtattggta aatagcaaaa ttgatccttc
     2521 tattttacta tctcttatat actcaattat gaaatgagca acattgttga gggaaccctt
     2581 tataaacttg acatctatat catatattcg cagagaatta tctataagaa tagcacattt
     2641 tctatttact cctgaaataa atcttgcagc ctcttttaga ttgcctagtg ttgctgacaa
     2701 tccaatcctt ataacgggca gaatacttgc agcctgtaat ctctcaagac caatagataa
     2761 atgtgcacct cgttcgtttg atacaagttc atgtacttca tcgattataa cccactccaa
     2821 acaatctagt gccttaagca ttttactact tgttagaatt acagcaagtg attcaggagt
     2881 tgtaatcaat acatctggtg ggttttcaag aatttttctc ttaatgctag tagtagtatc
     2941 accatgtcgt atttgtactc gcagatttag agattcagca tatttgataa ttcttcgaag
     3001 tacatcatta ttcaaggcgc gtagtggggt gatatagatt gccttgattt taccactatg
     3061 atgtatcgta tagttagata attgtgtaaa aattggtata atagctgctt ctgttttacc
     3121 agaaccagtt ggagcaacaa gtagactatt aatttttctt gaaatcaccg gtattgcttt
     3181 tttttgaatt gcagttagtg atttgaaacc ttcctttaga aatatttctc taacaaacgg
     3241 ttcagcttta gtctctttta atgtcagatg aagatcccac ttcttggtgt ttttgctgct
     3301 gctgttgttg ttgtttcaac tgttttgtct ttgaacttga tttttcataa accattgcgg
     3361 caagtagacc agtgataaac aatcctacag cgagccatgc atatga
//
LOCUS       DATAAS010000120         2633 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4972256, whole genome shotgun sequence.
ACCESSION   DATAAS010000120 DATAAS010000000
VERSION     DATAAS010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2633
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4972256"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(381..554)
                     /locus_tag="VHF08_01910"
     CDS             complement(381..554)
                     /locus_tag="VHF08_01910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067434.1"
                     /translation="MKMEKIFTSLRSFTTHNGKTKFCANCANMATQEALFNVGGGVTL
                     IERYCETCAKTVK"
     gene            complement(711..1763)
                     /gene="hflX"
                     /locus_tag="VHF08_01915"
     CDS             complement(711..1763)
                     /gene="hflX"
                     /locus_tag="VHF08_01915"
                     /inference="COORDINATES: protein motif:HMM:TIGR03156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEX2067435.1"
                     /translation="MVTYPDDFRLQEGKSLVESLVVETRGLQIVKIVTQKYLNHSEYG
                     LGSGKAEEIKEYVKESNVDQIIVDEHLTSKQIHNLEKLTGVQVIDRERLILNIFYSRA
                     TTSEAKLQIQLAEIKYEMPRVRESAKLTSSGERAGKGGMGEYTVDVKFRDLKRQASFI
                     KEKLKYAQRKRELYHQQRLKTRMPVVSLVGYTSSGKTTLFNLLTDQHKETSHSLFTTL
                     STTTRSLKIGNKGVLLTDTIGFISRLPTYMIDAFKSTLEESLAADLILLLIDSSEKIE
                     DIRIKYSSCWDVLDELKVDKSKVFVIFSKFDKIHSEQIEEISKDLEISNPVAISSKTG
                     YGIRKLKTMIEDHIVN"
     gene            complement(1830..2015)
                     /locus_tag="VHF08_01920"
     CDS             complement(1830..2015)
                     /locus_tag="VHF08_01920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067436.1"
                     /translation="MPMLMIQCKTCGEVFPGLYVDEGSNDAFKASAINANTSHTCSRG
                     HKNEYVTVDYMDWSTQE"
BASE COUNT          785 a          480 c          383 g          985 t
ORIGIN      
        1 tgttcatctt tgcaatgcac ggatgccact agcattacaa agacgatcca agaacaaaaa
       61 aaacatgttt gttttgtcaa gcttatatct ttctataaag ctacttcaaa ctgaagaaag
      121 taattagaaa gataatccta gcatgtcaaa tcctaatatc ttctttcata gatgctttat
      181 gatagccttc acatattata tctctgatac aaaaaggctt atttgttact tattaagtgt
      241 gtatcgtcta taagcccaaa aataaagact gcgaactgat ggtttgaatt ctacaaaatg
      301 gtataatatg aatcgattaa aattctaggc ccataatgtt tagataaact aattattata
      361 aataaggtat gagatgctat ttactttact gtctttgcac acgtctcaca gtatctttct
      421 attagagtaa cgcctccacc tacattgaat aaggcttctt gagtagccat gttagcgcaa
      481 tttgcgcaaa atttagtttt gccgttatgg gtagtaaaag atcttagcga cgtaaaaatt
      541 ttttccattt tcattttatt ttcacctcgt gaaattttct actaataaat acatcagcaa
      601 caatatcatt gttatgactg ctacaataag tatgaattgt gtgtttatta gtcatctctt
      661 agtagacacg tcgtgcctat aataacttat gtatttgttg tatgagttta ttaatttaca
      721 atatgatctt cgatcatagt ctttagttta cgtataccat atcctgtctt ggatgatata
      781 gctactggat ttgatatctc taaatctttt gaaatttcct caatttgttc tgagtgtatt
      841 ttgtcaaact tgctaaaaat tacaaacact tttgatttgt ctactttcag ttcatctaaa
      901 acatcccaac agcttgaata ctttattcta atatcttcaa tcttctcaga cgaatctatc
      961 aatagtaaaa ttaaatcggc agcaagtgat tcttctagtg tcgatttaaa tgcatctatc
     1021 atataggtgg gaagcctgct aataaaacct attgtatctg taagcaatac tcctttattg
     1081 ccgattttca atgaccttgt tgttgtcgaa agtgttgtga acaaactatg tgaagtttct
     1141 ttatgctgat ctgtcagcag gttgaacaat gtagtttttc ctgaactggt ataacctacc
     1201 agcgagacaa caggcattct agttttcagt ctttgttgat gataaagctc acgttttcgc
     1261 tgtgcatact ttaatttttc tttgataaat gaagcttgtc tttttagatc tcggaacttt
     1321 acatcaactg tatactcccc catgccacct tttccagctc tttcaccact tgaagttagc
     1381 tttgcgcttt ctcttactcg aggcatttca tatttaattt cagcaagttg gatctgtaac
     1441 tttgcctcag atgtagtagc tctagaataa aatatgttaa gtattaaccg ctctctgtct
     1501 ataacttgaa cacctgtcag tttctccaga ttatgtatct gttttgaagt caaatgttcg
     1561 tcaacaatta tctgatccac attggattct tttacatatt ccttgatttc ttcagctttg
     1621 ccagaaccta aaccatattc tgagtggttt agatactttt gtgtaactat ctttacaatt
     1681 tgtaagcctc ttgtttctac tactagtgac tctactagac tttttccttc ttgcagcctg
     1741 aaatcatctg gatatgttac caatattact ttggttacat tcaagaaaaa gtcaatacca
     1801 atctaatata tgcagtttac tgtgagatat tattcttgtg tagaccaatc catatagtct
     1861 actgtaacat attcattctt gtgtcctctt gaacatgtat gtgaagtatt agcatttatg
     1921 gcagatgctt tgaaagcatc attacttcct tcatcgacat aaagtcctgg aaagacttca
     1981 ccgcaagttt tacactgtat cataagcatt ggcattttat ttcttcatcc tcttcctctt
     2041 cttctcctca tcttatatta aagaatctga ctattatagg tatgttatat acacatataa
     2101 tcaatatgta tcaatgcatt ctattaatac tggattctta attattgttg cctactttcc
     2161 ctagaattta tttctgcagt ccttgtttgt aagctctcgg cattttgggt catgtctcca
     2221 gctaccattc ataaaaaatt caagatgttt gttattgtct ctatcaacta taaccctttg
     2281 atgaccattt ttaggattgc taagaccaaa tcttgatggg gaattgctag tatttcttat
     2341 atcgaatctc acactggtat ttaatttaac ttacttaaga actgtttgat aagtgtaact
     2401 agttagcatg ccaccatgaa gaaggacctt taatagaaga gaaatggaca tacttgtcgc
     2461 tctcgttatg ataataatat atgacaacaa ctatacaaaa ctatttttaa tttcacagtt
     2521 gtacttttca ccatcaaaat ctggatctgt caatttgtag tcagcatcat cgatcattgt
     2581 ctttaagaac gaatttaata taaaattaag cctaaaggtc aactaattat tta
//
LOCUS       DATAAS010000121         2331 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3352011, whole genome shotgun sequence.
ACCESSION   DATAAS010000121 DATAAS010000000
VERSION     DATAAS010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2331)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2331)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2331
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3352011"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(338..412)
                     /locus_tag="VHF08_01925"
     tRNA            complement(338..412)
                     /locus_tag="VHF08_01925"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(375..377),aa:Val,seq:tac)
     gene            632..1186
                     /locus_tag="VHF08_01930"
     CDS             632..1186
                     /locus_tag="VHF08_01930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEX2067437.1"
                     /translation="MSSGVDTLGALTEKLKQLINDTQDRYESFIDSTQLYKQAKVNEK
                     EYFSKIGEYLVATSAMNFLAIRVILEIKSTMEKGSSLKNPSGGLASSSSSSSSSPPTL
                     QADFGIGGFVGGTESNEVRGYTMPSPQPAQQEEPTFKPVDIVIERPSKMSVDKTTLTT
                     KKCIVCESIISNQAKFCSKCGNSQ"
     gene            1216..1632
                     /locus_tag="VHF08_01935"
     CDS             1216..1632
                     /locus_tag="VHF08_01935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067438.1"
                     /translation="MKIFNGRAATEEYMSTHSLTFSTPEMTLKKFALWLGEQVSQPDT
                     KENVPRLILYLEDKEKGGKKDSDFLPDIDDTFKPSGAVTEMYGGKPSSVDRDRTPPTI
                     TQLNKPQESRDKFCIGCGLKLKINSRFCTQCGTKQE"
BASE COUNT          858 a          357 c          424 g          692 t
ORIGIN      
        1 gatggctatt gcaattgaag tatttcagat aacatacata gtattaacag caataataat
       61 agtcaaagaa agaaaacgag aagtcaagac tagtacgaag gaaaagatta gatagaaaca
      121 ttatctgggt agcaagagcc agatatttaa agatggacct aaagtaaggc agagtacctt
      181 agtaaagaat caatcttcat ttccaaatct tttattcttc tgtgctgctg ttgtaatagt
      241 attaatggga gtcttatctt gagtgtagcc atttaaaggg attggttagg agtagctttg
      301 tcaatttata aagaatatgt atagatcatg accggtatgg agggaatggg attcgaaccc
      361 atgaccacct gcgtgtaagg caggtatcat aaccagtcta gaccacccct ccaggtggaa
      421 tttacgtcaa cttgaccgta tcgatattaa taggttgttt gaactagccg tatagactat
      481 gaaaaagtta tcttttctaa tatatgatta ctaattaaaa atattaattc tcctatatga
      541 tagctataaa atagtgatcg ttataataat agaattatct tcaattgcgc attcaaactt
      601 ttattaagcc tgaagatgca tttttttaat aatgtcctct ggtgtagata ccctcggtgc
      661 actgaccgag aagctgaagc agcttattaa cgatactcaa gatcgatatg aatcatttat
      721 agattcaaca cagctataca agcaagcaaa ggtcaatgag aaagaatact tttctaaaat
      781 tggtgaatat ttagtggcta catctgcaat gaattttctt gctattcgag taattttaga
      841 aataaagtct acaatggaaa aagggtcatc attgaaaaat ccctctggtg gactagcttc
      901 atcatcttcc tcttcctctt cttcccctcc cactctgcaa gccgactttg gaataggtgg
      961 atttgttgga ggaactgaaa gcaatgaagt aagaggatat actatgcctt caccgcagcc
     1021 ggctcagcag gaggagccta cattcaaacc tgtagatatt gtgattgaac gcccaagtaa
     1081 aatgagcgtt gataagacaa cattaacaac taaaaaatgc attgtatgcg aatctataat
     1141 ttctaatcag gcaaaattct gcagcaaatg tggtaattcg caataattaa tagctacact
     1201 gtagcattag tatcaatgaa gatcttcaat ggcagagctg cgacagaaga atatatgtct
     1261 actcattcac ttacgttttc tactcccgag atgactttaa agaaatttgc tctatggttg
     1321 ggagaacagg taagccaacc tgatacaaaa gaaaatgttc cacgactgat actttaccta
     1381 gaagacaagg aaaaaggagg aaaaaaagat tctgattttc tgccagatat tgatgataca
     1441 ttcaaaccta gtggagcagt aacagaaatg tatggtggga aaccttcttc tgtcgatcgt
     1501 gacagaacac ctccaactat aacacaatta aacaaaccgc aagaatctag agataaattc
     1561 tgtattggat gtgggcttaa actcaagata aattcgaggt tctgcacgca atgtggcaca
     1621 aagcaagagt aacgaaaaaa atagtagtta atatagtact gataacaaaa tcgatgaatt
     1681 gaatactatt aatattacga aaaattgagt atatattgta tttttgacgt gcaatataat
     1741 aataatatta aagattagaa agatagacat gtaaaataag tacaagtgtg ttgcataaag
     1801 atatacttga tgtgtcattt taaagagcta agagaagaag aattacaaga tatcctcagc
     1861 tataggttta gtgttaagtg tgtcaagtaa atgatcccaa catacaccaa atataaaaca
     1921 tcattttatg ttcctcttag gacttgaaag taaaaaactc tagatgaaca gtgactatga
     1981 gcgatgccat tcaaaagttg gctgattttt atgaagtaaa tgttaaaaat gcaaagtcga
     2041 ataaaaatta taaattctag ttatctttag tgtggaccat atactgtaaa ttgatgtaag
     2101 ttattgaaaa taaaaaaact gttaatatca tcttcatcat cttcatcttc attacattca
     2161 tgttatatgg aaaaacatat tgtagtatta agaaaacaat ccacaatatg tcaaagatag
     2221 aacagaagtt ttgatgatta tgctattctc tccatatagt agaagaaaaa agggacaaat
     2281 atctaagaat tggttaagct tcttgtttat agaaatacat gataaaatga t
//
LOCUS       DATAAS010000122         2987 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3352057, whole genome shotgun sequence.
ACCESSION   DATAAS010000122 DATAAS010000000
VERSION     DATAAS010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2987
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3352057"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..650)
                     /gene="aroD"
                     /locus_tag="VHF08_01940"
     CDS             complement(<1..650)
                     /gene="aroD"
                     /locus_tag="VHF08_01940"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR01093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HEX2067439.1"
                     /translation="MSRICVSIATHDLEQLKRQIDQAFNYGADYIEIRFDFLNLSDMD
                     QAMSISNMISKKAVYTLRAPDEGGHFKGSIAQRIAWLKKLAASKPMLLDVELNTIKYN
                     TCLTGYLKAQNVSLLISWHDFEKTPQDAELKRLLYEMRTYSQNIKMVATAQTTVDSLR
                     LLDLYENARGLNLIAFAMGDAGVISRVLCVIIGNAPFTYASLEKAISPGQLTVKQM"
     gene            complement(734..883)
                     /locus_tag="VHF08_01945"
     CDS             complement(734..883)
                     /locus_tag="VHF08_01945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="C2H2-type zinc finger protein"
                     /protein_id="HEX2067440.1"
                     /translation="MAAATSSNRKSPRSYRCDICGRNFDYIEELNSHKRIEHGETSKP
                     PAGVG"
     gene            complement(925..1806)
                     /locus_tag="VHF08_01950"
     CDS             complement(925..1806)
                     /locus_tag="VHF08_01950"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEX2067441.1"
                     /translation="MLVQQNIVNEIITGNCKEILSRIPANSIQLTITSPPYRNAIDYD
                     MHVSGNGGYYRGRTKLETSEYLEDMVEIFNDKVYRVTNNGGYCCIVIANEVTNGTLLP
                     LPHMLLSRLIQPFGNWNLHEEIIWHKVTGGTNRYGSFVINPYPKYYRANIMHEFILVL
                     RKGDVNSGRTQRIEMLPATHEEWTKEIANSIWHIAPVPPGYIEHPCPFPEEIPYRLMK
                     LYSYEGDIILDPFNGSGQTTKVAFHFQRRYVGIDTVKEYTKLAKGRLDDEPLHIRQDA
                     LIANWKKIPSHHTRRLR"
     gene            complement(1902..2963)
                     /locus_tag="VHF08_01955"
     CDS             complement(1902..2963)
                     /locus_tag="VHF08_01955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase II"
                     /protein_id="HEX2067442.1"
                     /translation="MQNTKSREIIIDPTVPPANLDDFLSRLNNITIIKADPKHVQAKN
                     FKIIFESSDADLVICKTIKEIQEFKSIGKVAGYLKRVSNNDDIDEIGRASQAGADFVI
                     VEAENWKIIPLENVIAKLHKSNTKVYTTAKNTEEIRTMFSVLELGVDGVIFSTDNEKA
                     VDELRDYLDAFVFPIKSAKILDVRDVGTGERVCVDTTSMLQLGEGMLIGSKSNFLFLV
                     HNESVGSSFTSPRPFRVNAGAVYCYTVMPDGKTKYLSEIEAGSEVLIVKNNGSSRRVT
                     VGRSKIETRPLRLIRADIEGETGTIILQNAETIRFIKSDGTLLPITEARVGEEILCYI
                     KPPSGRHFGMEVKEFIVEK"
BASE COUNT          881 a          581 c          449 g         1076 t
ORIGIN      
        1 ctcatttgtt taacggtcaa ttgaccagga gatatagcct tttctagaga agcataagta
       61 aacggagcat ttccgataat cacacataac accctagata ttacacctgc atcacccata
      121 gcaaatgcaa ttaaatttaa tcccctagca ttttcatata aatcgagcaa acgcaaggaa
      181 tctacagttg tttgtgcagt tgcaaccatc ttgatgtttt ggctgtatgt tctcatttcg
      241 tataagagtc ttttgagttc ggcatcttgt ggagtttttt caaaatcatg ccaagaaatc
      301 aataatgaga cattttgtgc ttttagataa cccgtcaaac aagtattata tttaattgta
      361 tttagttcaa catctaatag cattggcttt gaagcagcca atttctttaa ccaagcaatt
      421 ctttgagcaa tacttccctt aaagtggccg ccctcatcag gggctctcag agtatataca
      481 gcttttttac ttatcatatt agaaatactc atagcttgat ccatgtcaga taaattcaga
      541 aagtcaaaac gaatttcgat ataatctgct ccataattaa aggcctgatc tatttgtctt
      601 ttaagttgtt ctaaatcatg agtcgctatt gatacacata ttctactcaa acagatatca
      661 tataataaaa gtaaaattaa ttgcttttga aaggatatta cttttaagac tatacatttc
      721 ttatatcctt ctcttatcca actccagctg gaggtttact tgtctcacca tgttctattc
      781 ttttatgact attcaattct tcaatgtaat caaaatttct gccgcaaata tcacatcggt
      841 atgatctagg tgattttcta tttgacgatg tagccgcagc cataattgta tttgaaggaa
      901 taactaataa ttaaatgtga aagattagcg gaggcggcgg gtatgatgtg atggaatttt
      961 cttccaattt gctattaaag cgtcctgtct tatatgtaaa ggttcatcat cgagtcttcc
     1021 cttagccaat tttgtatatt ccttaactgt gtctattcct acgtatcggc gttgaaaatg
     1081 aaaagctacc ttagttgttt gtccacttcc attgaaagga tcgaggataa tatcaccttc
     1141 atatgaatat aatttcatca atcgatatgg tatttcctcg ggaaatggac atggatgttc
     1201 tatatatcct ggaggaacag gagcaatatg ccatattgag tttgcaattt cttttgtcca
     1261 ttcttcatgc gttgctggaa gcatttctat acgctgtgtt ctaccgctat ttacatctcc
     1321 ttttcttaac acaagaataa attcatgcat aatattagcc ctgtaatact ttggatatgg
     1381 attaatgaca aacgatccat atcggtttgt acctccagta accttgtgcc atataatttc
     1441 ctcatgtagg ttccaattac caaatggctg tataagcctc gataaaagca tatgaggcaa
     1501 tggcaataat gttccattag taacttcatt agcaataact atgcagcagt atcctccatt
     1561 gtttgtcact cgatatactt tatcattaaa gatctctacc atgtcctcaa ggtattcact
     1621 ggtctctaat tttgttcgac ctcgataata tccaccattt ccagatacgt gcatatcata
     1681 atcaatagcg tttctatatg gtggtgaagt tatagtcagt tggattgaat tagctggaat
     1741 tctagataaa atttctttac agttacccgt aattatttcg ttaacaatgt tttgttgaac
     1801 tagcattaac taaacgctat agatttatca atatcctgta tactttaaaa taatcaactt
     1861 tccgataaag aaatattatt ttccaagtgt gtcagtcttt tttatttctc tactatgaac
     1921 tcttttactt ccattccaaa atgcctgcct gacggaggtt tgatataaca cagtatttcc
     1981 tcacctactc tcgcctctgt tattggcaac agcgtaccat cactttttat aaaccttatt
     2041 gtctctgcat tctgcagaat tatagttcca gtctcacctt caatatctgc tctaattaat
     2101 cttaaaggac gggtctcaat ttttgatctt cctacagtaa cacgtctcga actgccatta
     2161 tttttaacta ttaatacttc acttcctgct tctatttctg aaaggtattt agtttttcca
     2221 tcaggcatta cggtgtaaca atatactgca cccgcattta cccgaaaggg tcttggtgat
     2281 gtaaatgagg atccgaccga ttcattatga acaaggaata aaaagttaga cttacttcca
     2341 ataagcatac cttcccccaa ttgaagcatt gaggtagtgt ctacacagac tcgttcgcct
     2401 gtccctacgt ctcttacatc taaaatcttt gctgatttaa ttggaaaaac aaaagcgtct
     2461 agataatccc ttaattcatc tactgccttt tcattatcag ttgagaatat gacaccatct
     2521 acacccaatt ctaaaactga aaacattgtt ctgatctctt ctgtattttt ggcagtagta
     2581 tagactttag tatttgattt atggagttta gcaatcacat tttctaaagg tattattttc
     2641 caattctctg cttcgacaat cacaaagtct gcaccagctt gagaagctct gccaatttca
     2701 tcaatgtcat cattatttga aactcttttg agatatcctg caactttccc aatagacttg
     2761 aattcttgta tttccttaat tgttttgcat ataactaaat ctgcatcaga tgactcaaaa
     2821 attattttga aattttttgc ttgtacatgt tttggatctg cttttataat tgtaatatta
     2881 tttagtctag ataaaaaatc atcaagattt gctggtggaa cagttggatc tattataatc
     2941 tctctacttt ttgtattttg caagatctct taacacctct tttgtat
//
LOCUS       DATAAS010000123         5805 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_113791, whole genome shotgun sequence.
ACCESSION   DATAAS010000123 DATAAS010000000
VERSION     DATAAS010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5805)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5805)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5805
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_113791"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            313..885
                     /locus_tag="VHF08_01960"
     CDS             313..885
                     /locus_tag="VHF08_01960"
                     /EC_number="3.6.1.55"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005777 - peroxisome [Evidence IEA];
                     GO_component: GO:0005829 - cytosol [Evidence IEA];
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003986 - acetyl-CoA hydrolase activity
                     [Evidence IEA];
                     GO_function: GO:0008413 - 8-oxo-7,8-dihydroguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_function: GO:0010945 - coenzyme A diphosphatase
                     activity [Evidence IEA];
                     GO_function: GO:0030145 - manganese ion binding [Evidence
                     IEA];
                     GO_function: GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine
                     triphosphate pyrophosphatase activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0009132 - nucleoside diphosphate metabolic
                     process [Evidence IEA];
                     GO_process: GO:0015938 - coenzyme A catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA pyrophosphatase"
                     /protein_id="HEX2067443.1"
                     /translation="MLNRSKILSRLTPSLNAITENISDPVPFRLAAVLVIIHYNDETP
                     HIFLTKRSSKITAHANEVSLPGGSFDKADRSLADTAIRETKEEIGLHFQRSDLIGHLD
                     VVRTLTSNFIIYPFVTLQDKTLVPHILNDEVQDIMDAPLIETLQTIDKDYNHSSFEDA
                     YKFTYRREVIWGATARILKQLYDLLCINHE"
     gene            1545..1691
                     /locus_tag="VHF08_01965"
     CDS             1545..1691
                     /locus_tag="VHF08_01965"
                     /inference="COORDINATES: protein motif:HMM:NF016811.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YHS domain-containing protein"
                     /protein_id="HEX2067444.1"
                     /translation="MAQKDPVCNMMVDEKKAQHVSEVNGQKIYLCSANCKSQFDQNPS
                     KYGY"
     gene            complement(1760..2272)
                     /locus_tag="VHF08_01970"
     CDS             complement(1760..2272)
                     /locus_tag="VHF08_01970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AsnC family transcriptional regulator"
                     /protein_id="HEX2067445.1"
                     /translation="MPLQLDDYDVSILKSLLKDGRKSFREISRETGITTPTVKARFNR
                     LVNVGFIKSVSPILDFDIVERNVVKPELQKGNNGNSKVIDNEDITKNKQQYNNQQKHP
                     QDIKYRIKKGIKIKLDCEFCKGPITGDPHVFRFANYERFFCCTSCMSGYKQKYAGRIE
                     SIKRKFEGKE"
     gene            2366..4588
                     /locus_tag="VHF08_01975"
     CDS             2366..4588
                     /locus_tag="VHF08_01975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042625 - ATPase-coupled ion transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEX2067446.1"
                     /translation="MAKDPVCGMFVEEKPNSIRYSKDGREYYFCSNQCLDEFTQPEKE
                     LKKLKMYVAISIALTIPLVIFSLPHMFPAQFGTLFSMDIMHYSNYIMLALATPLQFWI
                     GWRFYRGLWDGIKAKASNMDTLIAIGTTAAYLYSAIVTVAPGYFPFESVYFETAAIII
                     TLILVGRLLETRTKEKASNAVRKLLDLQPRMAKVIKRGETGIDEIEIPIEQIQEGEVM
                     VIRPGERIPTDGIVIEGSSSVDESAITGESIPVDKKKGDEVIGATINKSGLLKVKATK
                     IGQDTVLSQIITLVEEARTGKAQMQRLVDQVAKYFVPAVLAIAVGVGLGWYFIGDIGV
                     TFSLLAFVSVIIIACPCALGIATPAALMMGAGKGAENGILFKGGEYLEIAKKVKTIVF
                     DKTGTLTKGKPSVTDVIDLSGGVIGANELLRLASIAESGSEHPLGQAIVNKAKEKGIA
                     VVSNPDSFEAVSGHGLRATYADHVVLIGNRKLMDDNHIPVTESIDNTLKQLEIQGKTA
                     TLVAIDNKLSGTIALADTIKENAKEAIDILTKSMGVEVIMLTGDNERTAKAVASKLGI
                     SKVIAQVLPQEKEKVISKLKDEEGKVVAMVGDGINDAPALARADLGIAIGSGTDVAKE
                     TGGIILIKDDLRDVVTALDLGRKTVTKIKQNLFWAFAYNAGLIPIAGGILVPFMGVGI
                     FGWLPMLAGLAMAMSSVTVVGNSILLGRYKARFAIRKTRQKEIYSNDDLKQAYTPTQT
                     "
     gene            complement(4617..4847)
                     /locus_tag="VHF08_01980"
     CDS             complement(4617..4847)
                     /locus_tag="VHF08_01980"
                     /inference="COORDINATES: protein motif:HMM:NF012621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal-associated domain-containing
                     protein"
                     /protein_id="HEX2067447.1"
                     /translation="MKTEKALFKVVGMYCISCKPIVERQLKNEEAVKKIDIDYMTDSV
                     IVEFDPLLITKEEIKNRLEKSGYKFVRTATHL"
     gene            complement(4920..5162)
                     /locus_tag="VHF08_01985"
     CDS             complement(4920..5162)
                     /locus_tag="VHF08_01985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067448.1"
                     /translation="MKYLLDVGEEYKYLLNDENDEKANRMLVIEINPNDQDSSMIDIP
                     EEGDKVRVVGAWVTDNPDGYPGWNEIHPAWQTEVLQ"
     gene            complement(5354..5599)
                     /locus_tag="VHF08_01990"
     CDS             complement(5354..5599)
                     /locus_tag="VHF08_01990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067449.1"
                     /translation="MLIKSYIVKGYRNESALSRDLILITFASIAVLTLTTIYIGGISF
                     ADHLALAEVVNNPQQQQQEENKYTVTIQMMMTTNSYH"
BASE COUNT         1888 a          941 c         1048 g         1928 t
ORIGIN      
        1 tctttataag atgggtttat taaatgagag gctaactata gaactatttc atatattcac
       61 aatggaaaaa ctttagcata taactatagt aaaggcgtga tcattatctt taataaaaat
      121 tttcatttgt ctttcttcaa aacatgatac aactaaataa aaatgtcaag ttctaacaat
      181 gacttattat tgataacaaa tttgtcttta ttatcaaaaa cgatattttg tatatgatca
      241 ctataaaaat aggtctcttt cattttacaa tatccacata aattttattt caataatttt
      301 ctatgtttag atatgttgaa tagaagtaag atactctcgc gtctgactcc ttcattaaat
      361 gcaataactg agaacatttc agatccagtt ccttttcgtc ttgcagctgt gttagttata
      421 attcattata atgatgagac acctcatatt tttttaacaa agaggagttc aaaaataaca
      481 gctcatgcaa atgaggtatc gcttccaggc ggtagcttcg ataaagcaga taggtcatta
      541 gccgatactg ctattagaga aacaaaagaa gaaattggtc tacattttca aaggtcagat
      601 ctaattggtc atcttgatgt agtaagaact ttaacctcta actttattat atatccattt
      661 gttactttgc aagataagac cttggttcca catattctta atgatgaggt gcaagatatc
      721 atggatgctc ctcttataga gactctccaa acgatcgata aagactacaa ccactcatct
      781 tttgaagatg catataagtt cacttatcga agagaagtta tatggggagc caccgccaga
      841 atccttaagc aattatatga tctcctttgt ataaaccacg aataattatg gtcagcaata
      901 cctctgcgcg attaaagaaa acctgtagca ttatccttgg gaaaaaccta gataatgcag
      961 tatctatgaa taaacagaat tcagactaaa gtctgctatg attatcttat ctttatgctt
     1021 gaattgtccc caaggattct aggtgattta ctggtataag tttgacatgc acaaattaat
     1081 attgcctaat tggctcaaca tacctctgct ctattacaaa tataacaact ttagatgcct
     1141 ttctggcttc tgacgtaata gggtcatatt tcggattaac gttgtattgt ttagagaatg
     1201 gtagttgata atgactttaa tattatgttt ttgttgttgg ccatggtgac aattactagc
     1261 atcatattcc gtgccgtgtt tcatagggat gaagttttct tctttacaaa tatttcattc
     1321 attaggtttt tgtcatattg tatagataga tattccgatg cataactaca gatgcttaca
     1381 attgtaaaat atgacatttg aaaggatctg acttgataaa aatgtgtata tgagcgttcc
     1441 aaatgagtat gatatggtca aatagtagag tgttattaat agcaattcct ttacatttgt
     1501 aaacctttac tattatattt ccctttatct atactatatg tagtatggca caaaaagatc
     1561 ctgtatgcaa tatgatggtt gatgaaaaga aagcacagca tgtttcagaa gtaaatggac
     1621 agaaaatcta tctttgttct gcaaactgta aaagccagtt cgatcaaaat cctagcaaat
     1681 atggatattg aataacaata ttttaggttc actagcagag ctatcttata gcacttagct
     1741 tgcattataa agtctgctat tattcttttc cctcaaactt tctttttatg gattctattc
     1801 ttccagcata tttttgtttg tagccagaca tgcatgatgt acaacagaaa aatcgttcat
     1861 aatttgcaaa cctaaacaca tgtggatccc ctgtaattgg tcctttgcag aattcgcaat
     1921 ctaacttgat ttttatccct tttttaattc tatatttaat gtcttgaggg tgtttctgtt
     1981 gattgttgta ttgctgtttg ttcttagtta tgtcttcatt atctattact ttagagtttc
     2041 cgttattacc tttctgcaat tctggtttga caacatttct ttctactata tcgaaatcca
     2101 gaatcggaga taccgatttt ataaatccaa cattgacaag tctgttaaat cttgccttaa
     2161 cagttggtgt tgttatgccg gtttctcgag agatctcacg aaatgattta cgaccatctt
     2221 ttaatagcga ttttagaata gacacatcat aatcatctag ttgaagaggc atctatatac
     2281 actcttagtt atatggtcta ttatattttt acaattgtaa aggcctacag ttatacatct
     2341 gttcatgtat tagtagatac aagatatggc aaaagatccc gtttgtggta tgtttgtaga
     2401 agaaaaaccc aactccataa ggtattccaa agatggaaga gagtattact tctgcagtaa
     2461 ccaatgctta gatgaattta cacagcccga aaaagaacta aaaaagctga agatgtatgt
     2521 agctataagc attgcactaa caataccttt agtaattttt agtttacctc atatgtttcc
     2581 tgcacaattt ggcactcttt tttctatgga tattatgcac tatagtaatt atataatgct
     2641 agcattagct actccgttac aattctggat aggttggcgt ttctacagag gattgtggga
     2701 cggaataaag gcaaaagcat ctaatatgga tacacttatt gcaataggaa caacagcggc
     2761 ttatttgtat agtgcaatag ttactgtagc tcctggatat ttcccatttg aatcagtata
     2821 ttttgaaact gcagcaatta ttatcacatt aattctcgtc ggaagattgc ttgagacaag
     2881 aactaaagag aaagcctcta atgctgtaag gaaattgttg gatcttcaac caagaatggc
     2941 gaaggtcata aagagaggag aaacaggtat agatgagata gagattccca tagaacagat
     3001 tcaagaaggg gaagttatgg tcataagacc tggtgaaaga ataccaaccg atggaattgt
     3061 gatagaaggt tcgtcttctg tagacgaatc agccataaca ggtgaaagta tacctgtaga
     3121 taagaaaaag ggagatgaag ttataggtgc tacaattaac aaaagtgggc tgctgaaagt
     3181 caaggctaca aaaattggac aggatactgt gctttcgcag ataataacgc tagttgaaga
     3241 agcaagaaca ggaaaggcac aaatgcaaag gttagtagac caagttgcta aatactttgt
     3301 cccagcagtt ttagcaatag cagtaggagt aggacttgga tggtatttta ttggtgatat
     3361 aggagtgaca ttttcacttt tggcttttgt atctgtaata atcattgcgt gtccgtgtgc
     3421 tctaggtatt gcaacgccag cagcgttaat gatgggtgct ggaaaaggag ctgaaaatgg
     3481 catattgttt aagggtggag agtatctgga aatagcaaag aaagtaaaga caatagtatt
     3541 tgataaaacc gggactttga caaaaggcaa gccatctgta actgatgtaa ttgatctgtc
     3601 tggtggagta ataggcgcaa atgaattact taggcttgct tcaattgcag aatctggatc
     3661 agaacatcct ttaggtcaag caattgtcaa taaagctaaa gaaaaaggaa ttgctgtagt
     3721 atcaaatcca gattcatttg aagctgtatc cggtcatggt cttagagcaa catacgcaga
     3781 tcatgtagtt ctcattggaa atagaaaact aatggatgat aatcatattc cagttactga
     3841 aagcatagat aatactctca aacagcttga aattcaggga aaaacagcta ctcttgttgc
     3901 aattgataat aaactgtcag gaacaattgc acttgcagat actataaaag agaatgctaa
     3961 ggaagccata gacatactta ccaaatcgat gggagtagaa gttataatgt tgactggaga
     4021 taatgaaaga accgctaaag cagttgcatc taaacttggt attagtaaag ttatagcaca
     4081 ggtactgcca caagaaaaag aaaaagtaat ctctaagcta aaggatgagg aaggaaaggt
     4141 agttgcaatg gtaggtgatg gaattaatga cgcacctgca ttagcaagag cagatctagg
     4201 aatagcaata ggttcaggca cagatgttgc caaagagact ggcggtatta tactgataaa
     4261 agatgatcta agagatgttg ttacagcact tgatcttgga aggaagacag tgacaaagat
     4321 aaaacagaat cttttctggg cctttgcata taatgcagga ttgattccca tagcaggggg
     4381 tatattagta ccttttatgg gggttggaat attcggatgg cttcctatgc tagcaggtct
     4441 tgcaatggca atgagctctg ttacagtagt tggaaactcg atattgcttg gaagatataa
     4501 agcaagattt gcgatcagaa aaacaagaca aaaagagatt tactctaacg atgatttaaa
     4561 acaggcttat actccaacac aaacatgata aaactacaac aaattactga taatttttat
     4621 agatgagtag cggttctcac aaacttgtat ccagattttt ccagcctatt ttttatttct
     4681 tctttagtta taagtaatgg atcaaattct actattacac tatctgtcat ataatcaatg
     4741 tcaattttct taactgcttc ctcattcttg agttgccttt ctacaatagg tttgcacgag
     4801 atacaataca ttccgactac tttgaacaaa gctttttctg ttttcataat ctttttttct
     4861 gtttatctct ttttttactt atagattatt taccttttaa caaaaaaagg gcaccatcat
     4921 tattgcaata cctctgtctg ccatgctgga tgtatttcat tccatccagg atagccatca
     4981 ggattatcgg ttacccatgc accaacaact ctaactttgt caccttcttc tggaatatca
     5041 atcatgctag agtcttggtc atttggatta atttctatta caagcattct atttgccttt
     5101 tcatcatttt catcatttag aagatatttg tactcttctc caacatctaa aaggtacttc
     5161 aagtctccat catgttgacg tccttcatca ttctctattg taccaattac ctcttcgcat
     5221 gtagataata gctcgtagtt tcctggatta tgattatgag caagaacgtt accttttcta
     5281 catacttttt gaccattaat ggtagaggat gctacatttg catcatcgta ttttccttct
     5341 tttccacttg tgcttaatga taactgttcg ttgtcatcat catctgaata gttactgtgt
     5401 atttgttttc ttcctgttgt tgttgttggg gattatttac gacttcagct aatgctagat
     5461 gatcagcaaa tgagatacca cctatgtata ttgttgttaa tgttaaaaca gcgatactag
     5521 caaatgttat taatattaaa tctctagaca aggcagattc attacgatat ccttttacaa
     5581 tataagattt gattaacaaa gttactcgat attaattaac caaatctttt gaagatttaa
     5641 aataaaagat aatgagattg ttgtagcaaa gttcatagtc taaagaagta ggttggaatg
     5701 gagaatagtt taccttatta atatgttaat ataccagtgc cgttgctgat tagcattatc
     5761 cacttagata atgccatcaa ctgtcttctt tattagaggt gcagg
//
LOCUS       DATAAS010000124         1928 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_114204, whole genome shotgun sequence.
ACCESSION   DATAAS010000124 DATAAS010000000
VERSION     DATAAS010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1928)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1928)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1928
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_114204"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..244
                     /locus_tag="VHF08_01995"
     CDS             <1..244
                     /locus_tag="VHF08_01995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067450.1"
                     /translation="FGNWNKWINKFVKNNNNDKKEKPEELQDPSSTAAPSSTSTELLQ
                     PSQKITRKNVTYNNDGTVRLFPINKNMLTCFLILPI"
     gene            379..1614
                     /locus_tag="VHF08_02000"
     CDS             379..1614
                     /locus_tag="VHF08_02000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX2067451.1"
                     /translation="MNAYAYDLGTLVIIVLSVLMFAIFCAWLYFLIYTIISFKRLPKL
                     ESINQQQDAIIRDEFPKVSVILPARNEEKYIAKCLDSLLNQSYPNFEIVAINDSSSDR
                     TDEIIQRYHILNSKVVAINAESKQEEGWIGKNWACYQGYLNSTGEIFLFTDADTVHSR
                     SIMSLAVTYLIKQNLDALTAIPRILSEEDILVKITLPLLWTLSYAKYSALRANNPKSK
                     TGYLFGSFFIITRKTYEAVGTHKAVKSEIVEDGALGRKVKEEKFKLKVVRGESYVEAI
                     WARDLNTLLDGLRRLMIPLYQRERTSALLMIISSFLLLMLPFILLPFLLFNTTLFFIY
                     SYSVSVNDFLLLIDMATIALLFSTSAIQSKYALFQNMLYSLGSPLAGVIILFAFVSSI
                     LDATKKNAVNWKDRQYIIK"
     gene            complement(1617..1757)
                     /locus_tag="VHF08_02005"
     CDS             complement(1617..1757)
                     /locus_tag="VHF08_02005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067452.1"
                     /translation="MNSKNRRIGRVQWGQWDLSLPGRRVHLLYFRTEERKKENLVYEK
                     SR"
BASE COUNT          694 a          312 c          302 g          620 t
ORIGIN      
        1 atttggtaac tggaataaat ggataaataa attcgtcaag aataataata atgataaaaa
       61 agaaaaacct gaagaattac aagatccttc ttcaacagca gcaccatcat caacatcaac
      121 agaactgcta cagccaagcc aaaagataac aaggaaaaat gtcacttaca acaacgatgg
      181 tacagtaagg ctctttccaa ttaataaaaa tatgttaacc tgcttcctga ttcttccaat
      241 ctaatcgtgg aagagagtga gaggagagaa gcttaagata tcttgagtaa agagatatta
      301 aaatggaata tgcagctaag aagaataata atatctgctc tccttattta tatacgacca
      361 gtgtaactct tttaccaaat gaatgcatat gcttatgatt taggaacttt agttatcatt
      421 gtattaagtg tattaatgtt tgctattttc tgtgcatggt tgtacttcct aatttataca
      481 ataatatctt tcaaacgatt gccaaaatta gaatctataa atcaacaaca agatgctatt
      541 attagggatg aatttcccaa agtgagtgta attcttcctg cacgaaatga agaaaaatat
      601 attgcaaaat gtcttgatag tttactcaat caaagctatc ctaattttga aatagttgct
      661 attaacgatt cctcatctga tagaacagat gaaataattc aaaggtatca tatcttaaac
      721 tctaaagtgg tagcaattaa tgcagaatct aaacaagaag aaggatggat tggaaagaat
      781 tgggcatgtt atcaaggcta cctaaactca acaggagaga tattcctgtt cacagatgca
      841 gatacagtac attcaagatc tataatgtct ttagcagtaa catacttgat aaaacaaaat
      901 cttgatgctc ttactgcaat acccaggata ttatcagaag aggatatttt ggtgaagata
      961 acattgccac tactttggac tctttcatat gcaaagtatt cggcattacg tgcaaataat
     1021 ccaaaaagta agacaggata tctctttgga agttttttta taataactag aaaaacctat
     1081 gaagcagttg gtactcataa agcagtaaaa tccgaaatcg tagaagatgg tgccttagga
     1141 agaaaagtaa aagaagagaa attcaaattg aaagtagttc gtggagaaag ttatgtcgaa
     1201 gcaatatggg caagagatct taatactctg ttagatggac ttcgtagatt gatgattccg
     1261 ctatatcaaa gggaaagaac tagtgctttg ttgatgatta tttcttcatt ccttctgtta
     1321 atgctgcctt ttattctgtt accatttttg ttgtttaata ccactctttt cttcatttat
     1381 agttattctg tctctgtaaa cgactttttg ctgttaattg atatggcaac cattgctctc
     1441 ttattttcca ctagtgccat acaatcaaag tacgcccttt ttcaaaatat gttgtattct
     1501 ctaggttctc ctttagctgg tgtaatcatc ttgtttgcat tcgtatcatc aattcttgat
     1561 gctactaaga aaaatgctgt taattggaaa gataggcaat acattatcaa ataaagtcat
     1621 cgagattttt catatactaa attctctttc ttcctttctt cagttcgaaa ataaagtaga
     1681 tgaaccctcc taccaggaag actcaaatcc cactggcccc attgaactct tccaatcctt
     1741 ctatttttag aattcataaa ataataataa tatcaacatt aattgcaatc acttaaattt
     1801 acttgaaaat atttttttat aataaatttg taattctaga ataaatatca agaaccttgt
     1861 cccatgaaca atgtgaaggc taaaaaagta tttcttgaaa gcaaagataa actagaacaa
     1921 aacaagtc
//
LOCUS       DATAAS010000125         4758 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_115179, whole genome shotgun sequence.
ACCESSION   DATAAS010000125 DATAAS010000000
VERSION     DATAAS010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4758)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4758)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4758
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115179"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(207..1118)
                     /locus_tag="VHF08_02010"
     CDS             complement(207..1118)
                     /locus_tag="VHF08_02010"
                     /inference="COORDINATES: protein motif:HMM:NF014646.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="B12-binding domain-containing protein"
                     /protein_id="HEX2067453.1"
                     /translation="MYRRYTLEEVKRKIIDVLQSNGTGLSGVELSNETGINRITITKY
                     LDVLHTIGLIKKKKVGSVNVWFLETGVTDFEFPINYLEVQQKFINAIMIGDQNQAHRI
                     IVNVINSNIEKIRIVTDVILPTVNTLNELYNRGRLGVTERISLLNMISELVDLLKFNI
                     RPDRMKQNAHAISVVGSEDRICHAKIGALALQILGWNSSYIGNVEHYIDPFFDIDFQR
                     YVAKIWNNKKGVMIIFIYSSEEGSLRFLSATIKSIKEKMKAEIKMILLSAPELLSLSE
                     TIGADYVAKDIQSLIEWAEKEYKIELK"
     gene            1341..2552
                     /locus_tag="VHF08_02015"
     CDS             1341..2552
                     /locus_tag="VHF08_02015"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004055 - argininosuccinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEX2067454.1"
                     /translation="MAKEKVILAFSGGLDTSVCIRYLQMLHKVDVITLTVDCGQNEDF
                     EAVQLKAKAIGALKHIYIDAREEFATKYIIPCIKANGLYQGKYPLATALARPLIATKA
                     TELAAKESATAIAHGCTGKGNDQIRFDVTIRALNPKLKIIAPIRDMNLTRDIEVKFAK
                     EQNIPVSDEAKKYSIDLNLWGRAIEGGNIEDAYFEPPEDAFQFIKFDNTDVGYMEIEF
                     NNGIPISVDGNQMQIRDLIHYVNNKAGYYGVGITDHIEDRVIGIKSREIYESPAAICL
                     LESHKDLEKLVLTKHELRFKQIVDEQWSWLVYSGLWQDPLRSDLDIFIDATQKRVSGK
                     VKLKMHNGSLRVVGRESKHSLYKNDLATYATGSTFDQTHAQGFIELWGLQTITANSIA
                     STIDNAGEKLK"
     gene            2549..2740
                     /locus_tag="VHF08_02020"
     CDS             2549..2740
                     /locus_tag="VHF08_02020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067455.1"
                     /translation="MKIEYQYCWRETNIEEDMVAGGILLLYPDYSDDFIIRSAKKTTT
                     TTKDKVECGLTKNVDENRE"
     gene            2744..3604
                     /gene="lysX"
                     /locus_tag="VHF08_02025"
     CDS             2744..3604
                     /gene="lysX"
                     /locus_tag="VHF08_02025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine biosynthesis protein LysX"
                     /protein_id="HEX2067456.1"
                     /translation="MVELCIIYDKVRFEEKALYDKALKKGLKAQIVDAKTITINTESN
                     RKDFHLGDVVLQRSISHYRGLYLTACLEFLGLRVINKFKVGEICGNKLITSLTLAKHN
                     IPTPKTHLTFSAESAIEVINKIGFPLVLKPIIGSWGRGVFPLRDEEVANMIVEMREEN
                     DSPLARIYYVQEMIKRPPRDIRCIVIGENVVASIYRYSAENEWRTNVARGGKAEVAPI
                     TKELEDIALKAARVVGGGILGVDLMEDEKRGLLVHEVNNTVEFRGAANVSEADIAGAI
                     IDYATSIAKK"
     gene            3755..>4758
                     /gene="argC"
                     /locus_tag="VHF08_02030"
     CDS             3755..>4758
                     /gene="argC"
                     /locus_tag="VHF08_02030"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003942 -
                     N-acetyl-gamma-glutamyl-phosphate reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006592 - ornithine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEX2067457.1"
                     /translation="MKVGVVGASGYVGGELLRLLVVHPKVEVNMVTSRQKAGEYVHRI
                     HPSLKGFVDLTFSPLDIEKLVNSCDIVFTSVPHGKSNKIVKELYGRGIKIIDLSADFR
                     LKNPKDYVKWYGWEHPFPELLSKSVYGVPELHREDIKKSQLVSCPGCMAVTSLLALKP
                     LIENNLIDTEHIVVDSKIGSSGAGIKANAGTHHAMRYGVIRPYKPAKHRHTGEIEQEL
                     GLIAKKTIKVSMSPHAVNIVRGILTTNHTFMKKPMSELELWKVYRNSYRDEPFLRFIR
                     DKKGLYKFPDPKFLIGSNFCDIGFDIDEDNQRLVALSASDNLMKGAAGSAIQNMNILY
                     G"
BASE COUNT         1619 a          806 c          927 g         1406 t
ORIGIN      
        1 aaattattta tgggaggatg tgaataaata ttgcgagtag cattaacgtt gtctactttg
       61 tccagaatca ataagttaac tctcatactc atgacaacat aaaatacata ttgcttaaca
      121 tgcaataaat tcttccgcta ggtatatata catctataca tatagatgta tatatattcc
      181 catttctcat tcagtctttt ttattcttat ttcaattcaa ttttgtactc tttctcagcc
      241 cattcaatta atgattgtat gtccttggca acataatccg cgccaatagt ttctgatagt
      301 gagagcagct caggtgcact caataatatc attttaattt ctgctttcat tttttcttta
      361 attgatttta tagtggcaga cagaaagcgt aaggagcctt cttccgatga ataaatgaag
      421 atgatcatga cacccttctt gttattccat attttagcaa catatcgttg aaagtcaata
      481 tcaaagaaag gatctatata atgttctaca ttgccgatat atgatgagtt ccagcccaaa
      541 atttggagag ccaaagctcc tatcttggca tgacatatgc gatcctctga gccgacaaca
      601 ctgattgcat gcgcattctg cttcattcta tctggccgta tgttaaattt taataaatca
      661 actaactctg atatcatgtt taaaagagaa attcgttctg ttacacccaa tcttcctctg
      721 ttgtaaagct cgttaagagt attaacagta ggtaaaatga catcagttac tattctaatt
      781 ttttcaatat ttgaattaat tacatttact ataattctat gtgcttgatt ttgatcacca
      841 atcattattg cattgataaa tttttgctgc acttcaagat aattaattgg aaattcaaag
      901 tctgttactc ccgtttctag aaaccacaca tttactgagc ctactttttt tttctttatc
      961 aaaccgattg tatgtaatac atcaagatat tttgttattg taatcctatt aatcccagtt
     1021 tcgttagaaa gttcaactcc tgatagacca gtaccattac tttgtaaaac atcaatgatc
     1081 ttacgtttta cttcctctaa tgtgtaccgc ctgtacatga cctcgttaag cttttagtat
     1141 aataaaatct ttctttatcg cctttttgga ctttccttat tcaatattca atatgttatt
     1201 tcataaaata ttttatcgac attagcaatt taagactata gtagcatctg attgacatac
     1261 taatgtcact aacgctttaa tttaggtcat tgccggccaa aaaattataa atgtagtgtg
     1321 gcgaatgaca gcgcgtacga ttggcaaaag aaaaagtcat tttggcattt tcgggtggac
     1381 ttgacacctc ggtgtgcatc agatatttac agatgttgca caaagtcgat gtcataacct
     1441 tgacagtaga ttgtggacaa aacgaagatt ttgaagcggt tcaattaaaa gcaaaggcaa
     1501 ttggtgcctt aaaacacatt tacattgacg caagagagga gtttgcgaca aaatacataa
     1561 ttccgtgcat caaagcaaat ggattgtatc aaggtaaata tcctttggca acagcccttg
     1621 ctcgtccttt aattgcaacc aaggcaacag aactcgcggc taaggagagc gccactgcta
     1681 ttgcacatgg ctgtacagga aagggcaatg atcaaataag atttgatgtt acgatacgcg
     1741 ctctgaatcc aaagttaaaa attattgctc caataaggga catgaacctt acaagagata
     1801 ttgaagtgaa atttgccaaa gagcaaaata ttccggttag cgacgaagca aagaaataca
     1861 gcatagatct gaacctttgg ggaagagcta tagagggagg aaatatagaa gacgcttatt
     1921 tcgagccgcc agaagatgca tttcaattca tcaagttcga taacaccgat gtaggctata
     1981 tggaaataga attcaataat ggtattccaa tctcagtaga cggaaaccaa atgcagatta
     2041 gggatttgat acattatgta aacaacaaag ctggttatta cggagtagga ataactgacc
     2101 acatagaaga ccgagttatt ggaataaaat caagagaaat ctacgagtcc cccgccgcta
     2161 tctgcctact cgagtcacac aaggatctag aaaagttggt cttaaccaaa catgaactcc
     2221 gattcaaaca aatcgtagac gaacaatgga gctggctagt ttattctggg ttatggcaag
     2281 atccacttcg ttcagatctg gatatattta tagatgccac tcaaaaaagg gttagcggaa
     2341 aagtaaagtt aaaaatgcat aatggatctc tgagagtcgt agggcgagaa tcaaaacatt
     2401 ctctttataa aaatgatttg gctacttatg caacgggctc taccttcgat caaactcatg
     2461 cacagggatt cattgagtta tggggtttac aaacgataac cgcaaattca atagcatcta
     2521 ccatagataa tgcaggcgaa aagctaaaat gaaaatagaa taccaatact gttggagaga
     2581 aactaatatt gaagaggaca tggtagctgg cggaatttta ttattatatc cagattatag
     2641 tgatgatttt attatcaggt cagcaaaaaa aacaacaaca acaacaaaag ataaggtgga
     2701 atgtggcctt actaaaaatg tagacgaaaa cagggaatga taaatggtag aactctgcat
     2761 aatctatgat aaggtgcgtt ttgaagaaaa agcactatat gataaagcct tgaagaaagg
     2821 gctaaaggcg cagattgttg atgctaaaac tattacgata aatacagaaa gtaacagaaa
     2881 agactttcac ctaggtgatg tagtgttaca gagaagtata agccattaca gaggactgta
     2941 cttgacagca tgtttggaat ttttaggttt aagagtaatc aacaaattca aggttggaga
     3001 aatctgtggt aataaattaa taacttccct tacacttgcc aaacacaata taccaactcc
     3061 taaaacacac cttacattta gtgcagaatc tgcaattgaa gtaattaata agattggttt
     3121 tccccttgtt ttaaaaccaa taattggatc gtggggaagg ggagtttttc cgctcagaga
     3181 tgaagaagta gcaaatatga ttgtagaaat gagagaagaa aatgatagtc ctcttgcacg
     3241 tatatattat gtccaagaaa tgattaaacg gccaccgagg gatattagat gcattgtgat
     3301 aggagaaaat gttgtagctt caatttatcg atactctgct gaaaatgaat ggagaacaaa
     3361 cgttgcgaga ggaggaaaag cagaagttgc tccaatcaca aaggaacttg aagatattgc
     3421 tttgaaggct gcaagggttg taggaggtgg cattttagga gtagatttga tggaagatga
     3481 aaaaagaggc ctgttagttc atgaagtaaa taataccgtc gaatttcgag gcgccgctaa
     3541 tgtttctgag gcagacatag caggtgcaat catagactat gctacaagca tagcaaaaaa
     3601 ataataccaa ttctgatcct cagatctatg attgatatac acaggaatac gcataagtga
     3661 gattgatgtg aacaactttc ttcataacaa tcagaaaatc tataataaaa ttcataaagt
     3721 gcaccattgc cagaggaatt gagaaatcat agatatgaag gtcggcgtag tgggtgcatc
     3781 tggttatgtt ggcggagagc ttctgagatt gcttgtcgta catccaaaag ttgaagtcaa
     3841 tatggtaact tcaaggcaaa aggctggaga atatgttcat cgtattcatc caagtctgaa
     3901 aggattcgtt gatcttactt tttcaccatt ggatatagaa aaactggtaa actcttgtga
     3961 tattgtattt acttcagttc ctcacggaaa atcgaacaaa attgttaaag agctttatgg
     4021 caggggaatt aagatcatag acttatcggc agattttcgt ttgaagaatc ccaaagatta
     4081 tgtcaagtgg tatggctggg agcatccttt tcccgaactg ttgtcaaagt ctgtgtatgg
     4141 agttccagaa ttacatagag aagacatcaa gaaatcacaa ttggtttcgt gtcctggttg
     4201 catggctgtt acttcattgc ttgcactcaa accattaata gaaaataact tgattgacac
     4261 agagcatata gtagtcgata gtaaaattgg ctcatcgggt gcaggtataa aagcgaatgc
     4321 gggtacgcac catgccatgc gatacggggt aatacgtccg tacaaaccag caaagcatag
     4381 acatacaggt gaaattgaac aagaattagg acttatcgct aagaagacaa ttaaggtgag
     4441 tatgagtcct catgctgtta atattgttag aggtatactt accactaacc atacgtttat
     4501 gaaaaagcct atgtctgagc tagaactttg gaaagtatat agaaattctt acagggatga
     4561 acctttccta cgatttattc gcgataaaaa agggctctat aaatttccag atcctaaatt
     4621 tctaattgga tcaaatttct gtgatatagg atttgatatt gatgaagaca accagcggct
     4681 agtcgctctc tctgcatcag acaacttgat gaaaggagct gcgggatctg ctatacaaaa
     4741 catgaacata ctatatgg
//
LOCUS       DATAAS010000126         3058 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2813582, whole genome shotgun sequence.
ACCESSION   DATAAS010000126 DATAAS010000000
VERSION     DATAAS010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3058
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2813582"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..207
                     /locus_tag="VHF08_02035"
     CDS             <1..207
                     /locus_tag="VHF08_02035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067458.1"
                     /translation="RASSLPIVPQPISPTFLDNLLYLRFNLYYNIKLPSIFSLDLKLV
                     VAKFTRSNSANLIKDVSMKFFVLK"
     gene            complement(261..440)
                     /locus_tag="VHF08_02040"
     CDS             complement(261..440)
                     /locus_tag="VHF08_02040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S30e"
                     /protein_id="HEX2067459.1"
                     /translation="MPTHGSLTKAGKVRGQTPKIEGKPRSSLVSKSRNKNNFIKRFEK
                     RRLPGQKKPERGGRR"
     gene            949..2001
                     /gene="nadA"
                     /locus_tag="VHF08_02045"
     CDS             949..2001
                     /gene="nadA"
                     /locus_tag="VHF08_02045"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: protein motif:HMM:NF006879.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HEX2067460.1"
                     /translation="MASIALNVDTKGKAILDYTTLNVIAKMYYCYLKKMMIQDRDYVD
                     EIFALKKEKNAIILAHNYQLPEVQDVADFIGDSLALSRHAAHTDAEHIVFCGVHFMAE
                     TASIICPDKRVLIPDLEAGCSLSSTINAEELKTWIKEHPEAIVVSYVNTSAEVKALSD
                     YCCTSSNAVKVVSSVPKDKEILFLPDMFLGSYVANVTKRKNMYIWPGECHVHAGIKAE
                     DINKMLTTFKEADFLVHPECSCTSSALYHMATGELIKSGHILSTEGMMNHARKSHASQ
                     FVIATETGILHRMIKENPEKTFIPVKDDAVCKYMKKINLKKVHNSLLNGIYEVKVPSK
                     TAEKARLAIERMLSIS"
     gene            complement(2139..3002)
                     /gene="nadC"
                     /locus_tag="VHF08_02050"
     CDS             complement(2139..3002)
                     /gene="nadC"
                     /locus_tag="VHF08_02050"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR00078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HEX2067461.1"
                     /translation="MKNLQSFVNVRDALVKFLDEDIGTGDVTSNCLIPQDLHSRAQII
                     CKNKKSAIVCGLEEMSLVFDLCRCNTKTLVSDGSWVQKGTIVMTIEGRTRSILKAERT
                     ALNLLMRMSGIASETRYIKDAIADLNGSIIIASTRKTAPGLRLFDKKAVTIGGGNSHR
                     IRLDDMVLIKDNHLAIIGSVTKSVEVAKKNAASSMNIECEAKNSNEVIEAITAGADIV
                     MLDNFSPEDAAKIIKEISRMGIRQKVKLEISGGITMQNIRDYAKAEPDIISVGFLTHS
                     PKAVDFSLEII"
BASE COUNT          928 a          564 c          525 g         1041 t
ORIGIN      
        1 agggcaagtt cgctacctat agttccgcag cctatcagtc ctactttcct agacaactta
       61 ttatatttga gatttaatct atattacaat attaagttgc ctagtatctt ttcactggat
      121 ctaaaattag ttgttgcaaa atttactagg tcgaactcag caaacctcat caaagatgtt
      181 tcaatgaaat tttttgtgct aaagtaacta gtcaaaattt catatccgaa aggaaagttg
      241 cgttatatga cagaaagcgc ttaccttctt ccaccacgtt caggtttttt ctgtcctggc
      301 agccttctct tttcaaatcg ttttataaag ttgtttttgt tacgtgattt agatactaaa
      361 ctagatctag gtttaccttc gatctttgga gtttgacctc ttactttacc agccttggtt
      421 aatgatccgt gtgttggcat atattcgctg tcttaggcta taatgctgtc ttttatatat
      481 gtattactat aacactcttt gttgatttgg gacttttaga aatatcctat attgtaatta
      541 ccagaaatag attgaactaa ctgccaacac gttttcgtct acattgtttt acttacatga
      601 aaaacaatac tggaaattct caatcctaag ctctttcaaa tttagcaacc tatattcaaa
      661 aaagctcgtt ctctagcaag tatttctggt ttgtatatta tccctatttc gacacagagg
      721 gacacgactc tctttacagg tttggataat gctttacttt gactgtgtag aaaaaccaaa
      781 aaatataagt ataacagaag taatccattt tgtattgcct tattcttttt ttagtattaa
      841 gaagagagga ccatcacacg tttctagctt tagcttttac ttaggttaat agagacaata
      901 atattttctc agcttttttg ttaagtcttt cgcgaattac tagatcatgt ggcaagtatt
      961 gcccttaacg tggatactaa aggcaaggct atcctagatt atactacttt aaatgtaata
     1021 gcaaagatgt attattgtta tctaaagaaa atgatgattc aagatagaga ttatgtggat
     1081 gagatttttg ctttaaagaa agaaaagaat gcgataatcc tcgcgcacaa ttatcaattg
     1141 cctgaggtgc aggatgtagc agattttata ggagattctc tggcactttc aaggcacgct
     1201 gcacacacag acgctgaaca tatagtcttc tgcggcgtac attttatggc tgagactgct
     1261 tcgattatat gtccagataa aagagtgctt attcctgatt tagaagcagg ttgttctcta
     1321 tcatctacta ttaatgcgga agagttaaag acatggatta aagagcatcc agaggccata
     1381 gttgttagtt atgttaatac tagtgctgaa gtaaaggcat tatcagatta ctgttgcact
     1441 tcttcaaacg ctgttaaagt agtaagcagc gtcccaaaag ataaagaaat attgtttttg
     1501 cctgatatgt ttcttggctc ctatgttgca aatgtaacca aaagaaagaa catgtatatt
     1561 tggcctggcg agtgtcatgt ccatgctgga ataaaggcag aagacatcaa caaaatgctt
     1621 acaacgttta aagaggcaga ttttttagtt catccagaat gtagctgtac atcatccgcg
     1681 ctatatcata tggccactgg cgaattgata aaatctggtc acattttatc gactgaaggg
     1741 atgatgaatc atgcaagaaa atcacatgca agtcaatttg taattgctac cgaaacagga
     1801 attcttcata gaatgattaa ggagaacccc gaaaaaacat ttattccagt aaaagatgat
     1861 gcggtttgta aatatatgaa aaagatcaat ctaaagaagg ttcataattc tctattaaat
     1921 ggtatttatg aagttaaagt gccctctaaa acagcagaaa aagcaagact agctattgag
     1981 cgtatgctat caatatcata aaatgtaacc tctgaacaag cattcgatta aaacttggtc
     2041 tcttcaaacg ctttccttat aacctccatg ataagcaaat gggaaccttt aatctttagt
     2101 atatgatcat aacgactgtt cagagtgtct taaagctttc aaattatttc taggctgaaa
     2161 tccactgcct taggagaatg agtaagaaac ccgactgata taatatcagg ctctgctttt
     2221 gcgtagtccc ttatgttctg catggttatt cctccagaga tctctaactt taccttttgt
     2281 cgtataccca ttctggaaat ttctttaatt attttagctg catcctctgg agagaagtta
     2341 tcaagcataa caatatctgc tccagcggtt atggcttcaa taacttcatt tgaattctta
     2401 gcctcacatt ctatgttcat tgaagaggct gcgttctttt ttgcaacttc tacagatttc
     2461 gttacagagc ctataattgc aagatgatta tcctttatca agaccatatc atctaagcgt
     2521 attctgtggc tatttcctcc tcctattgtc acagcctttt tatcgaacaa tctcaaacct
     2581 ggtgctgttt tgcgcgtgct ggctattata atggaaccat ttaaatctgc aattgcatcc
     2641 ttgatgtatc tggtttcaga tgctatacca ctcattctca ttagaaggtt taaggctgtc
     2701 ctctctgcct ttagaataga acgtgttctt ccttctattg tcattacgat tgtccctttt
     2761 tgaacccatg atccatcaga aaccagagtt tttgtgttac agcgacatag atcgaaaacc
     2821 aaactcattt cttcaagacc gcacactatt gctgattttt tatttttaca tataatctgt
     2881 gctcgactat gaagatcctg tggaataaga caattacttg taacgtctcc agtaccgatg
     2941 tcttcatcca agaactttac tagggcatct ctaacattaa caaatgactg taaattcttc
     3001 attatattat gaaactttta gtgcatactt atgaggagct gtaatctcta gagtattg
//
LOCUS       DATAAS010000127         2164 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_115306, whole genome shotgun sequence.
ACCESSION   DATAAS010000127 DATAAS010000000
VERSION     DATAAS010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2164
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115306"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            421..1239
                     /locus_tag="VHF08_02055"
     CDS             421..1239
                     /locus_tag="VHF08_02055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEX2067462.1"
                     /translation="MGRLFDPHIHMYSRTTDDYEAMSKAGIEVIVQPSFWLGSPRTSI
                     GTFEDYWEHMITFETKRAKEFGIEHFVCISVNPKEALARPMAIDALEPMKKYLERERV
                     IAVGELGYNLINDLEEEVFVKQMDIATAKNMLMMIHLPHNNKLEGMKRIERILNSEKN
                     SRKNHERKKILIDHNTEETIEKTIDMGAWAGLTVYPLTKLSPERAIKIIKKYGTEHIM
                     INSSADWGISDPLSVPLVAREMRKEGFSKNDIENVTFYNAYEFYKQSPRMTWNP"
     gene            1258..2088
                     /locus_tag="VHF08_02060"
     CDS             1258..2088
                     /locus_tag="VHF08_02060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase family
                     protein"
                     /protein_id="HEX2067463.1"
                     /translation="MKLAFSTNAFKRYSLEEAIRMIAEIGYEGIELLCDSPHAYPPTF
                     QEKEIKSFKDQIAKFKLQISNLNAFTLYSITDVYHPSWIEDDKELRELRIIHTINCIK
                     LAKKIGAKNLSTEPGGPINERKTNVKYLEKLFMEGLNRISPIAEEENVKILIEPEPDL
                     LLENSNQFLNFIKNLNTNHIRLNFDIGHFFCVGEDPAKIIYKLCEYIEHFHLADIASN
                     RIHNHLIPGEGSINFREVLKTIETIGFKGFVTVELYPYQDNPKDAAKRAYEYLYEILY
                     "
BASE COUNT          812 a          330 c          368 g          654 t
ORIGIN      
        1 ctccttttca gtcctctgtg cattgtctta attgctgaac ctcaattaat atttaattcc
       61 tcctatctat gttaaacaag aatgttttat cttgttctat aaaaaaaatg tacgcataat
      121 attaattgtt aatggcgtag atgtataaca ttgttgttta atacagtaaa tattatcttg
      181 aattagaaac acaactgact tgtgtgttat cgcattgacc gataataacc aacgtacatt
      241 atataggaat gttgctatgc ttataaatgt ataatacaaa tatatgatgt aagcaattca
      301 tgcttgtatc atcattatta gataataatt cgatcactta gtcatagatg tcaaggttga
      361 tgttattact ctcacaataa atctataaaa tacaagagat gcttaatata atgatagaaa
      421 gtgggcagat tatttgatcc tcatattcat atgtattcac gtactactga cgattacgag
      481 gctatgtcta aagctggtat agaagtaata gttcaacctt ctttttggct tggtagccct
      541 agaacctcca ttggaacatt tgaagattat tgggaacata tgataacatt tgaaacaaaa
      601 agagctaaag aattcggaat tgaacacttt gtttgcatat cagtcaaccc gaaagaagct
      661 ttggctcgac cgatggcaat cgatgctcta gaaccaatga aaaaatatct cgaaagagag
      721 agagtaatag ctgttggaga actcggctat aatttgatta atgatctgga agaagaagtt
      781 tttgtaaaac agatggatat tgccacagcc aagaatatgt tgatgatgat tcaccttcca
      841 cataataaca aattggaggg aatgaaaagg atcgaacgca ttctgaacag tgaaaaaaat
      901 agtagaaaaa accacgagag aaagaagata ctgattgatc ataatacaga agaaactatt
      961 gaaaaaacaa ttgatatggg tgcatgggca ggactgactg tttatcctct cactaaactt
     1021 tctcctgagc gagctataaa aataataaaa aaatatggaa cggaacatat tatgataaat
     1081 agttcagctg actgggggat atccgatcca ctaagcgtac cacttgtagc tagggaaatg
     1141 agaaaagaag gattcagtaa aaatgatatc gaaaatgtga cgttctataa cgcctatgaa
     1201 ttctataaac agtctcctag aatgacttgg aatccttaag attggtagaa gttacctatg
     1261 aaactggcat ttagcactaa tgcattcaaa agatattctt tagaggaagc tataaggatg
     1321 atcgcagaaa ttggatatga ggggatagaa ttattgtgtg attctccgca tgcgtaccct
     1381 ccgacttttc aggaaaagga aataaaatca ttcaaagatc aaattgcaaa attcaaactt
     1441 caaatctcta atctaaacgc tttcacgctc tattctatta cagatgttta tcatccatct
     1501 tggattgaag atgacaagga attaagagaa ttacgtataa tacatacaat taattgtata
     1561 aaactagcga aaaaaattgg agcaaaaaat ctatcgacag aacctggagg accaattaac
     1621 gaaagaaaaa ctaatgtaaa atatctcgaa aaattattca tggagggttt gaatagaata
     1681 tctccaattg cggaagaaga aaatgtaaaa atacttatag aacctgaacc agatctttta
     1741 cttgaaaact ctaatcaatt tttgaatttc attaaaaatt taaacactaa tcatatacga
     1801 ctcaactttg atataggtca ttttttttgc gtgggagaag atccggccaa aataatttat
     1861 aagttgtgtg aatatattga gcattttcat ctagcagata ttgcttctaa tagaatacat
     1921 aatcacctaa tacccggtga aggatcaatt aatttcagag aagttttaaa aacaattgaa
     1981 acaattggct ttaaaggatt tgtaacggta gaactttatc catatcaaga taatccaaaa
     2041 gatgctgcaa agagagcata tgaatatctt tatgaaatat tatactagca ttccctaatt
     2101 ttcctcaaaa tgtcatcatt tttaaaaaag agtcaaatgc actcaattta ctcctcctat
     2161 atgc
//
LOCUS       DATAAS010000128         5047 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_115607, whole genome shotgun sequence.
ACCESSION   DATAAS010000128 DATAAS010000000
VERSION     DATAAS010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5047)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5047)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5047
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_115607"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            644..1174
                     /locus_tag="VHF08_02065"
     CDS             644..1174
                     /locus_tag="VHF08_02065"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEX2067464.1"
                     /translation="MNHIDLFSLISNCPDFPRKGIIFRDINPLLRTDHALHYISNQLY
                     HRFNKVTFESIAGIESRGFVIATALALKFNKGLIMIRKAGKLPGHTLKESYDIEYGSA
                     IMEIQKDAIKPGQSVLIADDLIATGGSAVAAARLVEKLGGTVTGFAFVIELDNLDGAN
                     KLRTLGYNVQSLVVYK"
     gene            1171..1977
                     /locus_tag="VHF08_02070"
     CDS             1171..1977
                     /locus_tag="VHF08_02070"
                     /EC_number="2.4.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5'-thioadenosine phosphorylase"
                     /protein_id="HEX2067465.1"
                     /translation="MTSNKYSADIGLIGGTGIYDSGILNDKKEIKIHTPYGEPSDSIT
                     IGKLSERSIAFIPRHGKNHRIPPHRINNRANIWALKELGVTRIIAPSAVGSLQKEFKP
                     GDIAIPDQFIDFTKGRQYTFYDGGQVCHISASDPFCAELKELTVECANNLNYKVHDNV
                     TYVCIEGPRFSTRAESLFFREVMKAHIIGMTVVPECILAREAEICYVSIATITDYDAW
                     TDFPVSSDKIIEILQKNIEKTKKLVGQLIPVIGHKRDKCACGNALEGALL"
     gene            complement(1981..2286)
                     /locus_tag="VHF08_02075"
     CDS             complement(1981..2286)
                     /locus_tag="VHF08_02075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067466.1"
                     /translation="MMVEEIRTDESIPVTIFVKNARGSNIASKLTGYFLVNDRQFRFT
                     AVAFGRIGGHNIALTISKKTLNTISKMGIEPDVLQLTIQRKLIEGDIILPKGLKIHD"
     gene            complement(2283..2726)
                     /locus_tag="VHF08_02080"
     CDS             complement(2283..2726)
                     /locus_tag="VHF08_02080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067467.1"
                     /translation="MCSNASSMTIPEPIGEDKVVYFGVINLNERGRTIGAIDIWRNVI
                     TKQLFCEEKRLGILEISDNIGMPKIDNDKKWAVAINRKKAGNDKWKLIKIIRQGNFKF
                     TETDDETTVEVDVKDYRIMDPDWWNFLVENNINRSIEITEQKNAK"
     gene            complement(2735..3094)
                     /locus_tag="VHF08_02085"
     CDS             complement(2735..3094)
                     /locus_tag="VHF08_02085"
                     /inference="COORDINATES: protein motif:HMM:NF014080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2067468.1"
                     /translation="MAANIDNIEEELVCELKISVEEAKVFVSIVKNGMMDPQDISNLL
                     GYSVQDAKKIAESLINKGMIIDFTATEYESLHPRFAITNRYKKRCQEDNIVFKKNLKV
                     DNIGKLLERPYDHARTK"
     gene            3334..4143
                     /locus_tag="VHF08_02090"
     CDS             3334..4143
                     /locus_tag="VHF08_02090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEX2067469.1"
                     /translation="MNIDEFVDAEEIFFELASQQRLSIIFDLYKKKSKLSDLSKDLGI
                     TMQEVHRNVNRLQDAGLIEKDSDGIFSLTTFGNTIIKQIPSFDFLSRHKEYFSEHTLG
                     ELPMKFVQRIGALNNCELVRGIVAILEYWKQIYRESENYIFEIIPQVPLDLIEPILFN
                     VRDRGIRLCYIFPIDVIIPKGRTELLRRLRFNELYNTGRIGRRMVDKVQVAVVINEKK
                     ASVLFPTQKGETDMNWMFYSEDQLFHDWCLDYFWFRWYGSKSFEEDKLREI"
     gene            complement(4158..4664)
                     /locus_tag="VHF08_02095"
     CDS             complement(4158..4664)
                     /locus_tag="VHF08_02095"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF002207.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit K"
                     /protein_id="HEX2067470.1"
                     /translation="MVLKDSSHDKSQSKKPLNVKEKSMKKVDSKVKKSASSKSSKRSL
                     ETNQSVDDSRQTTVQVVDSLKSTRPEDEVVTYTEIDFELREIAAKGNQVLIGPQRLTR
                     FERARITGARSLQLSLGAPSLIRIPNDVRDSISLAIAELDLKALPISIRRVLPNGIYQ
                     DIPIDWMK"
     gene            4775..>5047
                     /locus_tag="VHF08_02100"
     CDS             4775..>5047
                     /locus_tag="VHF08_02100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067471.1"
                     /translation="MDKIQTAGSVSRIPMIIQIVDKGIAPCELIRHLSPLCVRTILSY
                     LPLQDRIHKFSESIIYIETKLPIGAEKQKTQFKRGDIAFMTSNSSIC"
BASE COUNT         1605 a          875 c          868 g         1699 t
ORIGIN      
        1 attgtttata aaaagcatga tttgtcatat tctttaattc tagaaagata ctagatgggt
       61 aatccatagc cattaaggta gctaatatat aagtctccaa ataagcttcg acatagatca
      121 tatgtcattt gacgaacatc attttcatct attataccga aactatgtag atattcatga
      181 gccagttcca tgtaaagata tgaattatag tcttcgcaag tttttgaaag cagtttgata
      241 attccaagag caaatttatt taagactatt atattcgttc gcaatatatg atatgctccc
      301 aaattacttg gcataatctg caagattaga caatccggct ctatgcagtt caaatttctt
      361 taaaagagtt cacttgacta gctcaaacac ttcgttaaag taaattaact tagcgatttt
      421 gctttgattg cgaatatgct catctaatgg aaccaaggta gttagcactc ctctcgcaca
      481 ggtataaatg aatagaatct tactaagtga tatgttttgc attctgaatg aaatgattgt
      541 tatttagaaa tttagaacag tattttctta ttgtatatca ctatattaat cagcaataac
      601 agtaatcttt tttacagaaa ggctatggct acaccatgtg actgtgaatc atatagattt
      661 gttttccttg atcagcaact gcccagactt tccccggaag ggcattatct tcagggatat
      721 taatcccctt ctacgcacag accatgcatt acattatatt tcaaatcaat tataccatag
      781 attcaataaa gtaacttttg aaagcattgc aggtatagag tcaagaggtt ttgttatagc
      841 gacagcgtta gcattaaaat ttaataaagg tttgataatg atccgaaagg caggtaagct
      901 tcctggtcat actctcaagg aatcatatga tatagaatat ggtagtgcta taatggaaat
      961 acaaaaagat gctataaaac ccggccaaag tgtactgata gcagatgacc tgattgcaac
     1021 aggcgggtca gccgttgctg ccgcacgtct tgtcgaaaag ttaggaggca ccgttacagg
     1081 atttgcattt gtgatagaac ttgataatct tgatggagca aacaagttaa gaacccttgg
     1141 ctacaacgtg caatcattag tggtgtacaa gtgacttcta ataaatactc tgcagatatc
     1201 ggccttatag gaggtacagg aatttacgat tctggaatcc taaatgataa aaaagaaatt
     1261 aaaattcata ctccgtacgg cgaaccgtcg gattccatta ctatcggtaa attgtctgaa
     1321 cgcagtatcg cttttatccc aagacatgga aaaaaccatc gaattccgcc tcataggata
     1381 aataatcgtg caaatatttg ggcattgaaa gaacttggag tgacaagaat tatcgctcca
     1441 tctgcagtag gaagtttaca aaaagaattc aagccaggtg atattgctat acctgatcaa
     1501 ttcattgact tcacaaaggg aagacaatat actttttatg atggtgggca ggtttgtcat
     1561 atctctgctt ccgatccatt ctgtgcagag ctaaaagaac ttactgtaga gtgtgctaat
     1621 aatttgaatt ataaagttca tgacaatgtt acatatgttt gtatagaagg accaagattc
     1681 tctactcgag cggaatctct tttttttaga gaagtaatga aagcacacat aattgggatg
     1741 acagtagttc ccgagtgcat actggcaaga gaggcagaaa tttgttatgt ctcaattgca
     1801 actatcacgg actatgatgc atggaccgac tttccagtaa gttctgacaa gataatagaa
     1861 atattgcaaa aaaacatcga aaagactaaa aaattggttg gacagttaat accagtaata
     1921 gggcataaaa gggataaatg tgcctgcggg aatgcgcttg aaggagcatt gttataagga
     1981 tcaatcatgt atttttaggc ctttgggaag tataatatct ccttcgatta gtttccgttg
     2041 tatcgttaat tgcaatacat ctggttctat tcccattttg cttattgtat ttaaagtctt
     2101 ttttgaaata gtaagtgcga tgttatgccc acctattctg ccgaatgcta ctgcagtaaa
     2161 tctaaactgt ctatcattga caagaaaata ccctgtcagc ttgctggcaa tattactgcc
     2221 tctagcgttt ttaacaaaaa tagttacagg aatactttcg tcggttcgta tctcttcaac
     2281 catcattttg cgtttttctg ctcagtaatt tctatgcttc gatttatatt attctcaaca
     2341 agaaaattcc accaatctgg atccattatt ctatagtctt tgacatcaac ttcaactgtc
     2401 gtttcatcat cggtttcagt aaatttgaaa ttaccttgtc ttattatttt tatcaatttc
     2461 catttgtcat tgccggcttt cttcctatta attgcaacag cccatttttt atcattatca
     2521 atctttggca tacctatatt atcagagatt tctaaaatcc ctagtctttt ttcttcacaa
     2581 aatagttgtt ttgttatcac gtttcgccat atatcaatgg ctcctatcgt tctacctctt
     2641 tcattaaggt taataacacc aaaataaaca accttatctt cacctattgg ctctggtata
     2701 gtcatactgc ttgcattact acacataaat gaccttattt agttcttgca tgatcataag
     2761 gtcgttctag caatttcccg atattatcaa ctttcaaatt ctttttgaaa acaatattat
     2821 cttcctgaca ccttttttta tatctattag ttatagcgaa ccgaggatgc agtgattcat
     2881 attctgtcgc ggtaaagtcg attatcattc ccttattaat gagagattct gctatttttt
     2941 tcgcatcttg aacagaatag cccaggaggt tggatatatc ttgaggatcc atcataccat
     3001 tttttacaat tgaaacaaat acctttgctt cttctactga gatttttaat tcgcaaacga
     3061 gctcttcttc aatattgtca atatttgctg ccaaacacta aatgttattg atatctacaa
     3121 tattaaaatg attctattga taatattctc caattttaat caaattatga ggttactatc
     3181 agaggtcatt tataaagaaa taatcagtgc taggcaatag aagtaactat gggtcaacaa
     3241 gtttccatat ggactattgc ctaagtatag gcataatgct tattgttgtg taatagcttt
     3301 ttaacattaa ttatgacttc tgggttggaa aatatgaata ttgatgaatt tgttgatgct
     3361 gaagaaattt tttttgagct tgccagccaa caaaggttgt cgataatatt cgatctttac
     3421 aaaaagaaat ctaagctctc tgatctttcc aaggaccttg gaataactat gcaagaagta
     3481 catagaaacg ttaacagact acaagatgct ggactaatag agaaagattc agatggaatt
     3541 ttttctttaa ctacttttgg aaatacaatt atcaaacaaa ttccttcctt tgactttttg
     3601 tcacgacata aagaatattt ttctgagcat acattaggcg aacttccaat gaaatttgta
     3661 cagcgcatag gtgcccttaa taattgtgaa ttggtaagag ggattgttgc tattttagaa
     3721 tattggaaac aaatctacag agagtctgaa aattacatat ttgaaataat cccgcaggtg
     3781 ccacttgatc tcatagaacc tatattattt aatgtaagag atagaggaat aagattatgt
     3841 tatatatttc caatagatgt tattattcct aaaggaagaa ccgaacttct aaggaggcta
     3901 aggttcaatg aactctataa tacaggtaga ataggaaggc gcatggtaga taaagttcag
     3961 gttgctgtag ttattaacga gaaaaaagca tcagtacttt ttccaactca gaaaggtgaa
     4021 actgacatga actggatgtt ctacagtgaa gatcaattat ttcacgactg gtgtcttgac
     4081 tatttctggt ttagatggta tggttccaaa agcttcgagg aagataaact cagagagata
     4141 tagcatagat aataatttta tttcatccag tcaatcggta tgtcttgata aattccatta
     4201 ggcaggaccc ttctaattga tatcggcaat gccttcaaat ctaattctgc tattgctaat
     4261 gaaatagaat ctcttacgtc atttggtatt ctaattaatg acggtgctcc caaagatagc
     4321 tgcagagatc tcgcccctgt aattcttgct ctttcaaatc ttgtcagccg ttgtggtcca
     4381 attagaacct ggttaccttt cgcagctatt tctcttagtt caaaatcaat ttcagtatac
     4441 gtaactactt cgtcttctgg acgggtagat ttaagtgaat ctactacttg gactgttgtc
     4501 tgtctgctat catcaacaga ctgatttgtt tctaatgatc tctttgaact cttactggat
     4561 gcactttttt ttaccttgga atctaccttc ttcatgcttt tttctttaac attcaatggt
     4621 ttttttgact gagatttatc atgtgaagaa tcttttaata ccaagaatac tgcaacagat
     4681 attaaatata caaataaatg ttgctaatcc tttaaggagt caaaacagag aattatacgt
     4741 tttcattata tactattttt aataattcta gagggtggat aagattcaga cagccggttc
     4801 agtttcaaga attcctatga ttatacaaat agtagataag ggaatagctc cctgtgagct
     4861 gatacgtcat ctttctccat tgtgtgttag aacgattctg agttaccttc ccctgcagga
     4921 cagaattcac aaattttcag aatcaataat atatattgaa acaaaacttc caatcggagc
     4981 ggagaagcaa aaaactcagt tcaagcgtgg agacattgcc tttatgacgt ctaatagttc
     5041 tatatgt
//
LOCUS       DATAAS010000129         3351 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4979017, whole genome shotgun sequence.
ACCESSION   DATAAS010000129 DATAAS010000000
VERSION     DATAAS010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3351
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4979017"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            427..2097
                     /locus_tag="VHF08_02105"
     CDS             427..2097
                     /locus_tag="VHF08_02105"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEX2067472.1"
                     /translation="MLLAIPLILSGFTHLWNPIEFPSLHIDEGHYMRKTMSILEGTGL
                     DPLARYAAPYFGQIFLAGVLAIVGYPDSLNPSDGDDVLHSVQSLYLVPRVLMGLLAVV
                     DTFLIYKITERRYHNRNVALIAAILFAVMPYGWLFRRVFLETIQVPFLLTSILFAVYL
                     KDLKIENNYNTIRYKTILMILLSGTFLGLSIFTKIPVFTMIPAVGFLIYTNNTNGHKL
                     RNLGIWLIPVLLIPLIWPAHAMMIGEFDLWMNGVLWQTTERPSRPLIGTINTFFEMDP
                     VLFVLSMAGLIFAAVKRDFFLLLWVIPFLIFLHVIDYVSSFHLIPLLPAFSIASSRFI
                     VEITNKIIKKNKLQQILPIAVISGIIIFGLISTTMLITTNVNSSVYKALAVIIPKLPD
                     KDNTNNTASVTLVGAPTYFWLPRYAFDKAFDEKSYFSGKPLENERYIVIADRGLMRTM
                     SGTDNRPPNPLMQYLYENSQTIDRVIPDDETKYNVKNYPYVNMLQNPRSTEIEIRSNG
                     EDSTGNNNNNNSAANMTASSNNNKTIITDETTNLGETGDILSDLKLTP"
     gene            2462..>3351
                     /locus_tag="VHF08_02110"
     CDS             2462..>3351
                     /locus_tag="VHF08_02110"
                     /EC_number="3.2.1.-"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="sialidase family protein"
                     /protein_id="HEX2067473.1"
                     /translation="MKENIFLSRFCRQKKSCYILSITTAIIILFLFIDYTLLSPQPTY
                     AQSFGNITNLSNNTGFSSNPQITTFGSNIYVVWRDNSSGNDDIYFTSSVDNGTTFNDI
                     ENLSNNDGRSDEPQIAAVGANVYVVWRDNSSGKDQIYFKKSSDKGNSFNTTENLSNTN
                     GSSTDPQITATGNNAYIVWSDTATGNGDIYFRSSTDNGTSFSFPKNLSTNLDGQALFP
                     QVEAVRNNVYVVWQDETPDKGRIRFRASNDNGNEFSITRVLSQENEVNANSPQLSISE
                     SAIYVVWEDNSRSENNSSKN"
BASE COUNT         1149 a          566 c          556 g         1080 t
ORIGIN      
        1 caccattttt tcagaattca actgatgaac cttgtggtat tacttttata acaggactat
       61 atatgtatga cttcatttaa tttttgccac attatataat agtctgctgc atctctacta
      121 tagtcttagg caattttctg attttcccct ttatagattg ctaacaagtt gaaaatcttg
      181 ttgtaaagaa agcatttcat atgaagagca agaataaaga ataaaaagta tagaaataaa
      241 atagaaatat ttttctgcta tattttctaa tcgaatattt ttccgctgat tgattttaaa
      301 attttgtaaa gatataattt gtttataatg ctaaaaatgt aataatatat aaaaagaaca
      361 ataaagtaac tataaagtct gcacctagca caatctatta ccatcagcat ccgccaaaga
      421 agtattttgc tactggctat accgctaatc ttatcaggat ttactcatct ttggaatcct
      481 attgaatttc cttccttaca tattgatgaa ggtcactata tgcgaaagac aatgtctatt
      541 ctggaaggta ccggcttaga tccactagcc cgctatgccg ccccctattt tggtcaaatt
      601 ttcttagcag gtgtattagc gattgttggt tatcccgatt cgttgaatcc ttctgatggt
      661 gatgatgtac tacattcagt gcagagtctt tatcttgttc caagagttct gatgggatta
      721 cttgcagtag tagatacttt tcttatttac aagataaccg agcgtcgcta ccataacaga
      781 aatgttgctc tgattgcagc tattctcttt gcagtaatgc cttatggctg gctttttaga
      841 agagtgtttt tggagacaat tcaagtgcct ttccttttaa catcaatact gttcgcagtt
      901 taccttaaag atctaaagat agaaaacaac tacaatacca tcagatataa aactattctc
      961 atgattttac tttctggcac atttttagga ttgtcaatct tcacaaaaat tccggtgttt
     1021 actatgattc cggcagtagg atttttaatt tatactaata atactaatgg tcataagcta
     1081 agaaatcttg gaatatggct tatccctgtt cttctaatac cactaatttg gcctgctcat
     1141 gccatgatga ttggagaatt tgatctatgg atgaatggtg tgttatggca aacgacagag
     1201 cgtccaagta ggccattaat tggaacgata aacacgtttt ttgaaatgga tccagttttg
     1261 tttgtgctca gtatggccgg cttgatattt gcagcagtaa aaagagattt ctttcttttg
     1321 ttgtgggtta ttccatttct tatatttctc catgttatag actacgtatc gtcattccac
     1381 ttgattccac tacttcctgc cttctctatt gcgtcgtcta ggtttattgt agagataaca
     1441 aataaaatta tcaagaaaaa taaacttcaa caaatacttc caattgccgt aatttcagga
     1501 attataattt ttggattgat atctactacc atgctaatta caacaaacgt aaattcatct
     1561 gtgtataaag cattggctgt aattattcca aagttacctg ataaagataa tactaacaat
     1621 accgcctctg taacactcgt aggagcgcca acttattttt ggctgccgag atatgcattt
     1681 gataaagctt ttgatgagaa aagctatttc agcggaaagc cacttgaaaa cgaaagatat
     1741 attgtcattg ccgaccgagg gcttatgcgt accatgtcag gaactgataa cagacctcct
     1801 aatcccctaa tgcaatatct ctatgaaaat tcacaaacaa tagatagagt tattccagat
     1861 gatgaaacaa agtataatgt taaaaattac ccctatgtga atatgctcca aaaccctaga
     1921 tcaacagaaa ttgaaattag aagcaacggc gaagacagta ctggtaataa taataataat
     1981 aatagtgccg caaatatgac ggctagtagc aataataata agacaataat tacagatgaa
     2041 acaacaaatc ttggagaaac tggagatata ctatcagacc ttaaattaac accttagaaa
     2101 aaagacgata tgaattgtta gtctttagcg aggaaataga caaatgtggt aaaaatatta
     2161 atgacgaatt agaagacgac atagacttca gaagatttga tataattaca attgatattt
     2221 gtatgtaatc aatagaacta tcctctttat cagccaagaa acaatattta aaatagtttc
     2281 aacgactata ttgaatatac aaacattact tatgtaacag ccaacaagac aaaggtccta
     2341 ataagaatga aaaccaaatc ataatgctaa atttaatgtt caaaaattat ttctatactt
     2401 tcctttatga taagaaactt atagaggtca ttttctctta aatgatcaca aagacagtat
     2461 catgaaggaa aatatctttc tgtcaagatt ttgtagacaa aaaaagagtt gctatatcct
     2521 gagtattaca acagctataa tcattctttt tctatttatt gattatacgt tattatcacc
     2581 tcaacctact tatgctcagt cctttggcaa tattactaat ttaagtaaca atactggatt
     2641 ctcatctaat ccgcaaatca cgacttttgg aagtaatatt tatgttgtat ggcgtgacaa
     2701 tagttctgga aatgacgaca tttattttac atcaagcgta gataatggca ctacatttaa
     2761 tgatatcgaa aacttgagta ataatgatgg acgatctgac gaaccacaga tagcagcagt
     2821 cggagctaat gtatatgttg tatggcgtga caatagttct ggaaaagatc aaatttattt
     2881 taagaaaagt tctgataaag gtaattcatt taacactaca gagaacttga gcaacactaa
     2941 tggtagctca accgatccgc aaataactgc gactggaaat aatgcttaca tcgtatggag
     3001 cgatactgca acaggaaatg gcgacatata tttcagatca agtacagata acggaacttc
     3061 attttcattc ccgaaaaatt taagcacaaa ccttgatgga caggcacttt ttccgcaggt
     3121 tgaggctgta cgaaataacg tatatgtagt atggcaagac gaaactcctg ataaaggacg
     3181 aataagattt agagctagta atgataatgg caatgagttc agtattacca gagttctgag
     3241 tcaagagaat gaagtaaacg ctaattctcc gcaactatcc atatctgaaa gtgctattta
     3301 tgttgtttgg gaagataact cccgttctga aaacaattct tctaagaatt t
//
LOCUS       DATAAS010000130         2871 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4979947, whole genome shotgun sequence.
ACCESSION   DATAAS010000130 DATAAS010000000
VERSION     DATAAS010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2871)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2871)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2871
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4979947"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            611..1336
                     /locus_tag="VHF08_02115"
     CDS             611..1336
                     /locus_tag="VHF08_02115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3ae"
                     /protein_id="HEX2067474.1"
                     /translation="MAKGARRGGRVRDKWRDKQWVIVNAPVAFGGRPLSYVPITDIAN
                     SKGRVIENTMFDILKQDPTQHQTKIFVQIDDIRDGNASTIFKGHEYAKEFLRSLIRRG
                     SSMINYVHDFRTIDGYTFRVSIIAFSQRRLNSSKKHEIRMIAHRILSDKIPKLTVDQF
                     VQEATMGKMSADLLEEAKKIASIRHIGIKKTKLISTSESRAIEEAKAIEPTSTSSSSS
                     EASTADESDEEVDDYQQTTEATQ"
     gene            1383..1832
                     /locus_tag="VHF08_02120"
     CDS             1383..1832
                     /locus_tag="VHF08_02120"
                     /inference="COORDINATES: protein motif:HMM:NF013994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding domain-containing protein"
                     /protein_id="HEX2067475.1"
                     /translation="MTSEDNIRFSTAEISIIVHATENQDKILQSINNVLYISPDRFSS
                     TSSEGHWGNKILLLSAVIGSTEANSLIARILSGLSKIDRHSLSDFFDNYIDEKGNLYI
                     RLDKQRICQGRTSLSDNDSIRIRLRPVRRYKPTKILENYRRLLISSE"
     gene            1874..2377
                     /locus_tag="VHF08_02125"
     CDS             1874..2377
                     /locus_tag="VHF08_02125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067476.1"
                     /translation="MAQISEIDVIGTDYAGEISIDNIIYRINRKPAELTSYPYLVVCK
                     KIEEISVSTTDILVVDDFKRIEDGLKRRVRKRIGLEVTVSRARKQDGPNIGKWFKQIR
                     NLYKFCKLNDYQFILSSGANSELEMVSGRSFDSILKICDIKPEQYWRDLAEWIETKYQ
                     RMVFVNA"
     gene            2370..2702
                     /locus_tag="VHF08_02130"
     CDS             2370..2702
                     /locus_tag="VHF08_02130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067477.1"
                     /translation="MLKRRSKRRYLAILHSVHPHDNIREELSILNSITKRNSELFGHI
                     STELSYIRLIRSEEKNIIIISCLLQHIDNILSTIALIDPPLITIVISGTLKKLRRHLQ
                     KIFDNAYL"
BASE COUNT         1015 a          427 c          523 g          906 t
ORIGIN      
        1 taaaataaat tagtatcgta ttattcttca attatttttt cataattgac ttttatttct
       61 taatgctact gaccttgtca ttaccatcaa aagaaaggca ttatatttat tacaatagaa
      121 ataaatcgga tccttataat gatgataatt ttcattgtct aaaagaatat agaataaaat
      181 aagtgggagt tcatatcaaa ttaataattc taggacataa ttggagagga ttttagagta
      241 taacagtaag actgaatgta ttgctattgc tattcctaat ccaatcaatg gtattgattg
      301 aaatatcaaa attattccta tggttgttat agcaattata ctggctaaga tagtagaagc
      361 atagaaatat tgcagtaaaa atcctatttg gaaatagtta tttgtagtcc ttattgctgc
      421 attagcattg gtgttaatgt tcccatagac aggcttgaga ggtctattgt aggtaattcc
      481 acatctcaat aacgatgaat ggtaaactat tcttatgaaa gttttctctg cttttctatg
      541 ttacagtaaa ataaaatcag tctatcaatc aacgtacaac ttatattttg gttatagagt
      601 ctcacttttt atggctaagg gagctagacg aggtggcaga gtaagggata aatggcgaga
      661 taagcagtgg gtgatagtta atgctccggt agcatttgga gggagacctc tgagctatgt
      721 cccaattact gatattgcta attctaaggg acgtgtaatt gaaaatacca tgtttgatat
      781 cttaaaacaa gatcccacac agcatcagac aaaaatcttt gttcagatag acgacattag
      841 agacggtaac gctagtacta tcttcaaggg acatgaatat gcaaaagaat ttctcagaag
      901 cctcattaga agaggaagct ctatgattaa ctatgtgcac gattttagaa caatcgacgg
      961 ttatactttt cgagtttcaa taattgcatt tagtcaaaga aggctaaatt cttcaaaaaa
     1021 acatgaaatt agaatgatag cacatagaat actctcagat aaaatcccaa aattgactgt
     1081 tgaccagttt gtgcaggaag ctactatggg aaagatgagt gccgatcttc ttgaagaagc
     1141 aaagaaaatt gcgtcaatac gacacatagg cattaaaaaa acaaaattga tatcaacgtc
     1201 agagtctaga gcgattgagg aagcaaaggc aattgaacca acatcaacat catcatcatc
     1261 atccgaagct tctactgctg atgaatctga cgaggaagtg gatgactatc agcagacgac
     1321 agaagcgacg caataacttt taatcaatat ttgaccaagt cttagactat tggtattagt
     1381 ttatgacttc agaagataat attagatttt ctactgcgga aataagtatc attgttcatg
     1441 ctacagaaaa tcaagataag attttgcaat ccattaacaa tgtactctat atatcgcctg
     1501 atagattttc ctctacttct tccgagggtc attggggaaa caaaatttta ttactctctg
     1561 ctgttatagg aagtactgag gctaactctc ttatagcgag gattttatct ggattaagca
     1621 aaattgaccg ccattctctt tcggattttt ttgataatta catcgacgaa aaaggaaatc
     1681 tatacattcg tttagataaa cagagaatct gtcaaggaag aacatctctt tctgataatg
     1741 attctattag aattcgattg cgaccggtaa gaagatataa acctaccaaa atattagaaa
     1801 attataggag gcttttgatt tcaagcgaat agatctttgt ataaatttta aagagtataa
     1861 caaaattgct aaaatggctc aaatctctga aattgatgtt ataggaaccg attatgctgg
     1921 tgaaatatca attgataata ttatttatcg aataaacaga aaaccagcag aattaacgag
     1981 ttatccgtat ctagttgttt gcaaaaaaat tgaagagatt tcagtttcta ctacagatat
     2041 tttggtagtt gatgatttta agagaataga agacggttta aaaaggagag tgagaaagag
     2101 aattggactg gaggttactg tatcccgtgc tcgtaaacag gatggaccta acataggaaa
     2161 atggtttaag cagatacgaa atctgtacaa attttgcaaa ttgaacgact atcagtttat
     2221 tttatctagt ggtgcgaatt ctgagttgga aatggtttcg ggtcgctcat tcgactctat
     2281 attaaagatt tgtgatataa aaccagaaca atattggcgg gatctcgcag agtggataga
     2341 gacaaaatat caaaggatgg tgtttgtgaa tgcttaaacg taggtcaaaa cgtcgatatt
     2401 tggcaatatt gcatagtgtc catccgcatg ataatattag agaagagctt agtatactta
     2461 attctattac aaaaagaaat tccgaacttt tcggtcatat ttcaactgag ttatcttata
     2521 tcagattgat tcgatcagaa gaaaaaaata taattatcat aagctgtcta ttacaacata
     2581 ttgataatat tttatcaaca atagctttaa ttgatccgcc acttatcacg attgttattt
     2641 caggtacatt aaagaagcta cgaagacatc ttcaaaaaat atttgacaat gcctatcttt
     2701 aattatatta tcatttatct acgatagaca aagcgaatgg cggttgagca agtgaaatct
     2761 taacaactgt aatattctta tccttcttga ggatggctta atcctgtcaa tagcgaaata
     2821 tttcataggc actctatgat cgggcaaatt cctaagaaat gatgttctca a
//
LOCUS       DATAAS010000131         2156 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1241818, whole genome shotgun sequence.
ACCESSION   DATAAS010000131 DATAAS010000000
VERSION     DATAAS010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2156
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1241818"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            298..1065
                     /locus_tag="VHF08_02135"
     CDS             298..1065
                     /locus_tag="VHF08_02135"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX2067478.1"
                     /translation="MVEITKKIHTIEGITHPDPRGKVFPYLFIEENQDDLTLIDPSFL
                     SQLPILENYLLDAGYDIKNVKRIILTHVHVDHAQAANAIKEKSGAKIYSHWIEANYLA
                     HNPSYNGPPTTQETIDKLKRLGISIEELTKKYGSFEVEPIIVDNPVSDGDMIGSLRVI
                     HTPGHTPGHISLYHKEDGTIFGADSIYKHVFGADGMYVSAPQVSIDPVTALVSAQRLS
                     KIKFNKLLMAHQDSPLLERAREIVEKLVTDSIQKIRK"
     gene            1911..>2156
                     /locus_tag="VHF08_02140"
     CDS             1911..>2156
                     /locus_tag="VHF08_02140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067479.1"
                     /translation="MEKITDTNPKKEKEEEVESKAKAKPETTSIRVVRKALEALNTGD
                     VSRVHEFISPKYFNHESQVDPVRSKLRGPEEFIDTVKN"
BASE COUNT          768 a          328 c          355 g          705 t
ORIGIN      
        1 aattgatgat gcatcatata tcaatttcag acaatgatta tgattacaat ggtactattt
       61 ttctaggtta tcctaatact gatatgtatg aattatcaac taatattata tactaatata
      121 cacgtactca atgtctgaag cggttgagat aattgaaaga ctttgacaaa agtcaccttt
      181 tttattttta ttgtatttaa aattaagaac agtataatat tacatagatg ttgacgaatt
      241 tagtaacgaa ctatttataa ctgtcgtcct actactactg ccacaattat tcaaactatg
      301 gtagagataa ctaaaaaaat acatacaata gaaggaataa ctcatcctga tccccgtgga
      361 aaggttttcc cttatttgtt tattgaagaa aatcaagatg atttaacatt aattgatcca
      421 tcctttcttt ctcaactacc tatacttgaa aactatttgc ttgatgcagg ttatgatatt
      481 aagaatgtaa agcgtataat tctaactcat gtacatgttg atcatgcaca agctgctaat
      541 gcgataaaag agaaatctgg tgccaaaatt tattctcatt ggattgaggc aaattatcta
      601 gcacataatc catcatataa cggtccacca acgacacagg aaactattga taaattaaaa
      661 aggctcggaa tatcaataga agaattaaca aagaaatatg gaagttttga ggtagaaccc
      721 ataattgtag ataatccggt atcagatggt gatatgattg gcagtcttag agttatccat
      781 accccagggc atacgccagg acatatttca ctttatcata aagaagatgg aactattttt
      841 ggagctgata gtatatataa acacgtattt ggtgcagatg gtatgtatgt atctgctcca
      901 caagtatcaa tagatccagt aacagcatta gtttctgcac aaagattgtc taaaattaag
      961 tttaataagc tgttaatggc ccatcaggat tctcctttat tagaaagagc aagagaaatt
     1021 gtagaaaagc tggtaactga tagtatacaa aaaataagaa agtaaaaata aaaattatta
     1081 tatctttttt tgtactcata atttgttttt ttcttatctg tgtctctagg tgctttgtct
     1141 aaatagcgta atctcaataa taatagcttg attaacagta tctgaattag ctgctaattg
     1201 ctgcgtgcaa actgagctat tgcttaggat acagagatac acttggactt tgtgctacct
     1261 accgagttgc aacctaagtt atagcttggc ttacatttgc atcatcacca ttaacctgtg
     1321 gaataatgtt ttgaatgttt aacttacact tgcttaaaga taaatggaaa tcgattcttt
     1381 tataagatat tttatgtctt tttgtgtgag catattgtat cagttttatt attgattgta
     1441 tagcagcaac taaggtgttt tcctatacta ctaatattct ggactttttt gacgttttag
     1501 aagtataata aagagtctct ttttgtcatc gttatattca cacgatagag gttgatatta
     1561 gagtcgccaa ctcatcaata gtagccaact gtaagtttaa tctgctttca agaacctata
     1621 agtttcttct tcactcatag ctaaagatgt gctcatgcat caaatcttca ttacatagct
     1681 gacatgacta tctattttat agattaatat gaatagaata tagatgtcac ttacgataga
     1741 agcaatatca tggataatga tagcgaatga gtgaggatag tttacgtaac tcatcttttg
     1801 tatacttaca ggaaacaaat gagtacatct gagaataaaa tatcacagat gtagttaggt
     1861 gctcctatca actttttatc attttcaaac attaattcat ttggttaaaa atggaaaaaa
     1921 ttacagatac aaatcctaaa aaagaaaaag aagaagaagt agaatcgaaa gcaaaagcaa
     1981 aaccagaaac aactagtatc agagttgtca gaaaagcact tgaagctctt aacacaggag
     2041 atgtgagcag agttcatgaa ttcataagtc caaaatactt taatcatgag tcccaagtag
     2101 atccagtcag gtcaaagcta agaggacccg aagagtttat agatactgtc aagaat
//
LOCUS       DATAAS010000132         2137 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_667496, whole genome shotgun sequence.
ACCESSION   DATAAS010000132 DATAAS010000000
VERSION     DATAAS010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2137
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_667496"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(550..798)
                     /locus_tag="VHF08_02145"
     CDS             complement(550..798)
                     /locus_tag="VHF08_02145"
                     /inference="COORDINATES: protein motif:HMM:NF018008.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067480.1"
                     /translation="MLDGKSVTGKPGDVIFVPKGAPHRFVVGDKGGHALVISPPELEF
                     YFFKISELLDKGEVSYETESRIGKQYGQVFLDNTKHWK"
     gene            complement(805..978)
                     /locus_tag="VHF08_02150"
     CDS             complement(805..978)
                     /locus_tag="VHF08_02150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067481.1"
                     /translation="MKDKPFDFHGAKFTIKVLTSETNGSYTILDIIHPPNLGPALHIH
                     PKGSETFYIVEGH"
     gene            complement(1273..1674)
                     /locus_tag="VHF08_02155"
     CDS             complement(1273..1674)
                     /locus_tag="VHF08_02155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067482.1"
                     /translation="MSIIILSLVILFTLTSAAIAFAQKPLPDDLEVYIDEKIGEHASL
                     VANIVYQSNMLVVLRGDILIPHYLNPISNTSLSADESGASADDLEYNPVLWKVIEMLK
                     QEFGYSIDNIAVNGLGSRDNPDRLYVVMTKQ"
     gene            complement(1862..2008)
                     /locus_tag="VHF08_02160"
     CDS             complement(1862..2008)
                     /locus_tag="VHF08_02160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067483.1"
                     /translation="MVAALTVVAAPAYALTGEVTNSKYLEIMEHRYRVGEFSDTITGT
                     VNNI"
BASE COUNT          708 a          360 c          337 g          732 t
ORIGIN      
        1 tgtacctttg atatattaga tctaatcagc attattttga ataaatcata aacctttcta
       61 ttgtaagaaa caatatttca taatattctt aaaatagtat aaaaaatata atattataca
      121 taaatctaaa atgggcatta taacagagga tggatagtga agatgctaaa gcagaacgca
      181 atgaatttag aacaaaagat ccagatctga aagacaaggt aataaccaaa tgtgtatttg
      241 tacatccata gctatatctt ggcttcctat gacgtgatgc atttatacta ataccagctg
      301 ctttattcct cttaccaatt ggagagatat gggcaatagt tgacatagta agaataaagg
      361 aaaaggagaa gaggaagaaa gataatgaaa acaaaaacta aagtatttct catatctggt
      421 atagcaatga ttgcggtgag cttggcggta gaagcactat atcccttgat atatattgta
      481 cactttcctt tacataatat aatatttgcc tatttttaaa agattaattt aatttctttt
      541 agattttgac tatttccaat gttttgtgtt atctaagaaa acctgaccat attgttttcc
      601 tatacgtgat tctgtttcat atgaaacttc gcctttgtca agtaattcac ttattttaaa
      661 aaaataaaac tcaagttctg gaggactgat tacaagagca tgtccacctt tgtctcccac
      721 aacaaatcta tgtggagctc ctttgggaac aaaaattaca tctccaggtt tacccgttac
      781 tgatttccca tctagaatga attcctaatg gccttcaact atgtaaaagg tttctgaacc
      841 tttgggatgt atatgtaatg caggccccag attaggtgga tgaattatat ctaggatagt
      901 atagctaccg ttcgtttcag aagtaagaac cttgatagta aattttgcac catgaaaatc
      961 aaatggttta tccttcacaa aaaatatttt acatttaaga atatatcagt ttaatttgca
     1021 aaagccgaga attgttaagg agacaaaaaa aggtacgccc caagataact tgttgtgacc
     1081 ctctactttt cctttcaaat cagattccaa agtatctttt aatatttaat gaaacaaagt
     1141 ttttctgcac cctcagcttg ttctttttcc ttccttcctt atatctcttg taagcacagg
     1201 gaaattgaac ataagcgtcc tttgtctgca agctgacttt tttgtgatcc ttagttttag
     1261 gaagattatt gattattgct ttgtcatcac tacgtacaat ctatcaggat tatctctact
     1321 gcctaaacca ttaacggcta tattatctat tgagtaacca aattcttgct ttaacatctc
     1381 tataactttc cataagacag gattatattc taggtcatct gcagaagcac ctgactcatc
     1441 tgctgataga ctagtattac taataggatt aagataatgt ggaattaaga tatcaccacg
     1501 taatacaaca agcatattac tttgataaac aatgtttgca acaagtgaag cgtgttcacc
     1561 tatcttttca tcgatataca cttcaagatc gtcgggaagt ggtttttgtg cgaatgctat
     1621 tgcagcagat gtcaacgtaa atagtatcac taaagatagt attataatac tcacggtatt
     1681 ccacctagta acataacata atggttcaag tcattgccct ggtaatagac atttatagaa
     1741 aatgggctcg tgtcttgtga tggaagtggt gtcacgtctg catatcctgt ttcgattgtg
     1801 attaattgat tggctttatc gtacaacaaa agataaatcg tgattgaaga tacttcttca
     1861 gtcatatatt attaaccgta ccagttattg tatcagaaaa ttctccaaca cgatatctgt
     1921 gttccattat ttctaagtat ttgctattcg ttacttcccc tgttagtgca tatgctggtg
     1981 ctgcaacaac ggttaaagct gctaccaaag atattccaaa taatagcttt ttaatgtgta
     2041 tatttacatt tttataaata aaacatatat tttgagaata tcaagcgaat actaccatat
     2101 tctttctaat ggtagatgta tatatatata ttcatcc
//
LOCUS       DATAAS010000133         3155 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2290025, whole genome shotgun sequence.
ACCESSION   DATAAS010000133 DATAAS010000000
VERSION     DATAAS010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3155)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3155)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3155
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2290025"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(178..1827)
                     /locus_tag="VHF08_02165"
     CDS             complement(178..1827)
                     /locus_tag="VHF08_02165"
                     /EC_number="2.1.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA];
                     GO_function: GO:0050797 - thymidylate synthase (FAD)
                     activity [Evidence IEA];
                     GO_process: GO:0006231 - dTMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent thymidylate synthase"
                     /protein_id="HEX2067484.1"
                     /translation="MTSRNSNNFLDNFTDEEKSVLKSHFSNPDRAVFAIITPRQVDRG
                     ALMSRYSRTDKTMRRIFLNEFANNPKRGEEFYQKILLEYGDDSVAELGEAQVAIEWIS
                     NVAAKRIEDHRIGLSYLEKSSRYVAFDQKVNGHYKYHREEKIMASPYADQYIQTCDFA
                     FETYSKNIQPLQKFIEEIKPIEHFLFFDSISKQEVLYGNLKSSTDIESARRIYKATIK
                     AKALDVLRAILPASTLTNLGITGNGRAFEYLLSTMFASDLTEIKLLASQLYAELDKII
                     PAFIRRANDKYGQSLQRYIIDTKRAISAIAQQSLTGIELENSPQNVKLLNYEDNFEAE
                     VKVASAILYDSVLGHSLEGIIHHIKSVPEQERHKIIQTFTKFRNNRRQRPGRAFEMTE
                     YTFEMFTNFGMFRDLHRHRILTMERQLLSTKHGYDIPQEIYDLGILKDFKDCMYKSHE
                     VYEMLDKKMPEEAQYVVNFAYKYPYFIKINLREACHMIELRTIPQGHPDYRTVCQEMF
                     RQIKGVHPVLASGIKFVDLNMYELERFGAEKNMDRKKRELN"
     gene            2047..2916
                     /locus_tag="VHF08_02170"
     CDS             2047..2916
                     /locus_tag="VHF08_02170"
                     /inference="COORDINATES: protein motif:HMM:NF037920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CdvA-like protein"
                     /protein_id="HEX2067485.1"
                     /translation="MSEFKLEFIGKQVKDLYGTLMGKVMGMITDIDGSIESISVDCGT
                     SGLKQLAYEQLLVQGDYVIYIPRWRLDAQKLLRQKSLTLQRIRALQDIATENDSMKDD
                     VELVYMKYDKRLHDLEENANHLNGNLELRLKELEEESNRIKTILFDAKLQFRSNEMTE
                     EIYQQINIYTSELLEHVNLEKTEINNVKTKLSQQTLENNNLLTITPNSKLTENQQNST
                     KTAKSTQLQEEEESNIENIAVPQVVTTATVNTSATKGKNTSEVKDKIAEDEEDKNSNS
                     EREENWLNQVINE"
     gene            3031..>3155
                     /locus_tag="VHF08_02175"
     CDS             3031..>3155
                     /locus_tag="VHF08_02175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX2067486.1"
                     /translation="MKYRSRTEIVAMILEAANGGATKTKIMYKAFLSYAQLREYLS"
BASE COUNT         1099 a          536 c          530 g          990 t
ORIGIN      
        1 agcactaaag attaataata ttgaatttaa ggagatcaac tatgatgcta tagttaattt
       61 tttatgtaca gaaaagaatt tttccatgag tagagtaagc acaagcttag ataaagtgaa
      121 aaaatcaatt acaaatcgaa atcaatcatt agagaagtgg tttaagtaaa gtagatatca
      181 attcaattct cgctttttcc tatccatatt cttttcagcc ccaaaccttt ctagttcata
      241 catattgaga tcaacaaatt ttataccact agctaaaaca ggatgaactc cttttatctg
      301 tctgaacatt tcttgacaaa ctgtgcggta atcaggatgc ccttgaggaa tagtcctaag
      361 ttcaatcata tgacatgctt cacgaagatt aatttttata aaataaggat atttgtatgc
      421 aaagttaacc acatattgag cttcttcagg cattttcttg tcgagcattt catatacttc
      481 atgagatttg tacatacaat ccttgaaatc tttgagaata ccaagatcat atatctcttg
      541 aggaatgtca taaccatgtt tagtagatag aagttgcctt tccatggtta ggattctatg
      601 acgatgcaga tctcggaaca taccaaaatt tgtaaacatc tcaaaagtgt actctgtcat
      661 ctcaaatgct ctgcctggac gttgccgtcg gttgttacga aactttgtaa atgtttgaat
      721 tattttatgt ctctcttgtt ctggaacaga cttaatatga tggataattc cttcaagtga
      781 atgacctagt acggaatcat ataaaattgc ggaagcaacc tttacttcag cttcaaagtt
      841 atcctcataa ttcagcagtt ttacattttg tggactgttt tctaattcaa ttcctgttaa
      901 ggattgttgg gcaattgcag aaattgctct tttcgtatct attatatatc tctggagaga
      961 ctgtccatat ttgtcatttg ctcttcttat aaatgctgga ataattttat ctagttccgc
     1021 gtaaagctgg cttgccagca attttatttc agtcaagtct gatgcaaaca ttgtcgataa
     1081 aagatattca aatgccctac catttcctgt aatgcctagg tttgtaagtg tagaggcagg
     1141 caatatggca cgaagaacat ctaatgcctt agccttaata gtcgctttat atatgcgtct
     1201 tgctgattca atatctgtac tagattttag atttccatat aatacctctt gttttgatat
     1261 agaatcaaaa aagagaaaat gttcaatagg cttaatctct tcaatgaatt tttgcagagg
     1321 ttgaatattt ttgctgtacg tctcaaaggc aaaatcacat gtttgaatat attgatcagc
     1381 atatggtgat gccatgatct tttcttctct gtgatacttg taatgaccgt taactttttg
     1441 atcaaatgcc acgtaacgtg aagatttttc gagatatgat aatcctattc tatggtcctc
     1501 aattcttttg gcggcaacat ttgaaatcca ttctattgca acctgtgcct ctcctagctc
     1561 agcaacagaa tcatccccgt attctaataa tattttttga taaaattctt cacccctctt
     1621 aggattatta gcaaattcat tgagaaatat gcgcctcatt gtcttatctg ttctagaata
     1681 tctagacatc aatgctcccc tatcgacttg tctaggggta attatggcaa aaaccgctct
     1741 gtcaggatta gaaaaatgtg atttaagaac agacttttcc tcgtcagtaa aattatcaag
     1801 aaaattgttg ctattccttg aagtcatcac aaaggaacct tataattact ataaaaaact
     1861 tttaaaagat ctactacgtt gctatagtca cccattacat atttgtgggt aaacgtcata
     1921 caaatcacac tttattgtcc ttctcttttt tgtaataata acaatactag atcacaaaat
     1981 tacctcacta aataacataa taattttgac aaccctatca ttatatgaac aaatttaacg
     2041 ctttacatga gcgaatttaa gctcgaattt attggaaagc aggtcaagga tctgtacggc
     2101 actttaatgg gaaaagtaat gggcatgata acagatattg atggttcaat tgaatcaatc
     2161 agtgttgatt gtggcacttc tggcctcaaa cagttggctt acgaacaact actggttcag
     2221 ggggactatg tgatttatat tccaagatgg aggctggatg cacagaaatt gttaaggcaa
     2281 aaaagtctta ctttacaaag aataagggcc ttacaagata ttgccacaga gaatgattca
     2341 atgaaagatg atgttgaact agtttatatg aagtatgaca aaagacttca cgaccttgaa
     2401 gagaacgcaa accatcttaa tggaaattta gagttaaggc taaaggaatt agaggaggaa
     2461 agtaatagaa ttaaaacaat actatttgat gctaaactgc agtttaggag taacgagatg
     2521 acagaagaaa tataccaaca aattaatatt tatacaagtg aattattgga acacgttaat
     2581 ttggaaaaga ctgagataaa taatgtgaaa acaaagctgt cccaacagac attagagaat
     2641 aacaacctct taactataac gcccaactct aaactaacag aaaaccagca aaattcaact
     2701 aaaactgcca aatctacaca acttcaagaa gaagaggaat ctaacataga aaatatagca
     2761 gttccacagg ttgtgacaac cgccactgta aacacttcag caactaaagg aaaaaacact
     2821 tcagaggtta aagataagat agctgaagat gaggaagaca agaattccaa tagtgaaaga
     2881 gaagaaaact ggctcaatca agtaattaat gaataaaacc ctagtgctga gccaggaccc
     2941 ggctatatca ttgattcatc tattttatag aattatgtta ctaaaaaatg tgtcaatata
     3001 ttaaaataaa caatttaggg tatttaagtc gtgaaataca gaagtagaac agaaattgta
     3061 gcaatgattt tagaagcagc caatggagga gcaacaaaga caaaaatcat gtacaaagct
     3121 tttcttagct acgcacaatt gagagaatat ctttc
//
LOCUS       DATAAS010000134         3841 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3364442, whole genome shotgun sequence.
ACCESSION   DATAAS010000134 DATAAS010000000
VERSION     DATAAS010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3841
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3364442"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..198)
                     /locus_tag="VHF08_02180"
     CDS             complement(<1..198)
                     /locus_tag="VHF08_02180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067487.1"
                     /translation="MSLHIIKNKSKLLMVEMSNEECIKMEETAIQDHVEQINNNGNLW
                     IDIEKPTRNKIEMLGRKFPFNE"
     gene            complement(452..754)
                     /locus_tag="VHF08_02185"
     CDS             complement(452..754)
                     /locus_tag="VHF08_02185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067488.1"
                     /translation="MCAHHEKEKGLRKNHNLVTVGWSILVMGLSLAAVIILWMWFGHI
                     GPTFSEDVLAEQQRMLRERYDLPAQRVTEDPVELQTPPSLRNLEDNTTDINSNRTT"
     gene            complement(945..3296)
                     /locus_tag="VHF08_02190"
     CDS             complement(945..3296)
                     /locus_tag="VHF08_02190"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEX2067489.1"
                     /translation="MEPKIKDKSWNPAVEQIILKKWEETDIYKFSIKKEKEAFVIDTP
                     PPYPSGRPWHIGAAAHYAQIDMIARTARMMGYNVMFPIGIDRNGLPVEIYTEKKHKVR
                     MRQMDREKFLDLCRVALDDLEAEMIQIMKNMGLSGNFEEYYRTDSDEFRALTQSTFIE
                     LWKRELVYLANRPNNYCPDCGTTIADAEIIYEDIPTKLIYMNFKVKETNENIIIASTR
                     PELLFACQSVIVNPEDERYLGLQGKHAILPLFDREVEILPHHLAKPEFGSGAVMVCSY
                     GDHNDVQIFRELGLKEIVALNSNGMTTSAAGPYINLRVKQARIRIIEDLKNAGLLSKE
                     ENIIHRTPLCERSNTPIEIIPLQDYFVKQLDFIPKLKELAMKIKFHPEMHKQILLNWI
                     DSVAIDWPVSRRRFYGTEIPIWYCINCKTPNLPKPGKYYRPWKEKPPFEKCNKCGNTE
                     FIGEDRTFDTWMDSSITPLFITKYKRDQELYKHSYPTKIRPQAKDIVRTWLYYTMLRC
                     YQLTGQLAWSDAWIMGYGVDEKGEKMSKSKGNVIDPFPIVHRYGADTFRFWSAIEANL
                     GHDFRCSEQRILSSQKFLSKLWNLGRFLSSFDFISEAPHELSASDKWILAELSNLVDE
                     CEKGYEDFNFFIPANAIREFTWSLFASHYVEMVKGRVYDMNDSAGQKSAIFTLHKCLS
                     TILKLLAPLCPFITEELWTKMYSTKSIHLQCLPQAQKYYLEMRKYTQYITEFNSRVWN
                     KKKQTISRETGKPLSLKDSIDITVPVELDAFKKDLCIMHNLRT"
     gene            3364..3645
                     /locus_tag="VHF08_02195"
     CDS             3364..3645
                     /locus_tag="VHF08_02195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067490.1"
                     /translation="MAAATTGQLLLLHILIMGIISLFFLFTVASSILLIMILLASEIS
                     GEFAANSMWLATILASIITVIFLQKVIGRLYDRLYCVIVHFPNDNNIRK"
BASE COUNT         1190 a          710 c          577 g         1364 t
ORIGIN      
        1 ctcattaaaa ggaaattttc gcccaagcat ctctatttta ttgcgagtag gtttttcgat
       61 gtctatccac aaattcccat tattgtttat ttgttctaca tgatcttgga tagcagtttc
      121 ttccattttg atacattctt cgttagacat ttctaccatt agaagcttgc tcttattttt
      181 gataatatga agagacatac acacattatc aatattcata gatccaaatg atatacaact
      241 ataatctaca tttcaattac tgattcagaa caagcacaaa aaacaatatg gagaagatat
      301 aatttcgttt ttgcaaattc tctcgactac gtaactgtta caaatttaag atactcaaag
      361 ttatgttacc tataccaaga tccttaaact atattctaaa attgtcataa tctcatgctt
      421 tagatttatc aataagttaa acatacaaag actatgtcgt cctattgcta ttgatatctg
      481 tagtattatc ttctaaattc cttagagaag gaggagtttg tagctcaact ggatcttctg
      541 tgactctttg agctggaaga tcataccttt ctctcagcat tctttgctgt tctgctaaaa
      601 cgtcttctga aaaagttggt cctatatgac caaaccacat ccatagaatt ataactgcgg
      661 ctagagatag tcccataacc aatatcgacc agcctacagt aacaagatta tgatttttac
      721 gcaagccttt ctctttttca tgatgtgcac acataataca acaatgttaa acgaggattg
      781 cttttaaaaa ttattcgctt tctacatata tatatattta ttagtttaat taagcaataa
      841 aacatcggtt tttatcattc aaagccagat taggaatttt tcttatgttt taaaatgtta
      901 gttgaatctt atttatgaaa agatactgct cccaatagta gatttcatgt tctcaaatta
      961 tgcataatac aaagatcttt tttaaatgca tctaactcga caggaacggt aatatcaatt
     1021 gagtctttta atgagagtgg ctttccagtt tcccttgaaa tggtttgttt tttcttattc
     1081 catacccgcg aattgaactc ggtaatatat tgagtatatt ttctcatctc caagtagtat
     1141 ttttgcgctt ggggcagaca ttgcagatga atgctttttg tactatacat ctttgtccag
     1201 agctcttctg tgataaatgg acacagaggt gcaagtaatt ttaaaattgt tgatagacat
     1261 ttatgcaaag taaatatagc agatttctga cctgctgaat cattcatatc atatacgcgg
     1321 ccttttacca tttctacata atgggaagca aacagactcc aagtaaattc tctaatcgca
     1381 ttggctggaa taaagaagtt aaagtcctca tagccttttt cgcattcgtc aaccaaattt
     1441 gaaagttctg caagaatcca tttatctgag gcagaaagct catgtggagc ttctgaaata
     1501 aaatcaaatg atgagagaaa tctacctaag ttccatagtt tagaaagaaa cttttgtgag
     1561 cttaagattc tctgttctga acatcgaaaa tcatgaccca aattagcttc aattgcagac
     1621 caaaatctaa aagtatctgc accatagcga tgaacgatag gaaaaggatc aattacatta
     1681 cctttactct tgctcatctt ttcgcctttt tcatcaactc cgtatcccat aatccaagca
     1741 tctgaccatg caagttggcc cgtcaactga taacagcgca gcatcgtgta ataaagccat
     1801 gttcttacaa tatcttttgc ttggggtctt atttttgttg ggtaactgtg tttgtataat
     1861 tcttgatctc ttttatattt tgtaataaat aatggagtaa tgctagaatc catccaagta
     1921 tcaaatgttc tatcttcgcc aataaattca gtattgccgc atttgttaca tttttcaaat
     1981 ggcggctttt ctttccatgg ccgataatat ttaccaggtt ttggaagatt cggagttttg
     2041 caattgatac aataccatat tggaatttct gtgccgtaga accgtctcct tgaaacaggc
     2101 caatcaattg ctactgaatc tatccaattg agcaaaattt gtttgtgcat ctcaggatgg
     2161 aacttaattt tcattgcaag ttcttttaac tttggaatga aatctagttg ctttacaaaa
     2221 taatcttgta atggtattat ttcaattggt gtattgcttc tctcacacaa tggtgtccta
     2281 tgtattatgt tttcttcttt tgataaaagt cctgcatttt ttaaatcttc aataattctt
     2341 attcttgcct gctttacccg aaggttaatg tatggcccag cagcactggt agtcattcca
     2401 tttgaattta aagctactat ttctttcaat cctaactctc tgaatatttg cacatcatta
     2461 tgatcaccat aactacatac cattacagca ccagaaccaa attcaggttt tgctaaatgg
     2521 tgtggaagaa tttcaacttc tctatcaaat agaggcagta ttgcatgttt accttgcaat
     2581 cctaaataac gttcatcttc tggatttaca ataacagact gacatgcaaa aagtaattct
     2641 ggcctagtag aagcaattat aatattttcg ttagtttctt tgactttgaa attcatataa
     2701 ataagtttag ttggaatatc ttcatagata atctccgcat cggcaatagt agttccacaa
     2761 tcaggacaat aattatttgg tctatttgcc agataaacaa gttcacgttt ccaaagctca
     2821 ataaaagtac tctgagttaa agctctgaat tcatcagaat cagtacgata atattcttca
     2881 aaattgccac ttagacccat atttttcatt atctgaatca tttcagcttc tagatcgtca
     2941 agagcaaccc tgcaaagatc aagaaacttt tccctatcca tctgacgcat tcttacttta
     3001 tgcttcttct cagtatagat ttcgactggt aaaccgtttc tgtcaatacc aataggaaac
     3061 atgacattat agcccatcat tctagcagtc ctagcaatca tgtctatttg cgcatagtgt
     3121 gctgcagccc ctatgtgcca tggccttcca gacggatatg gcggcggagt atcaattaca
     3181 aaagcctcct tttctttttt tattgaaaat ttgtaaatat cagtttcttc ccattttttt
     3241 aggataatct gctctaccgc aggattccaa gacttatctt tgattttagg ctccatttcg
     3301 ttgtttcatt taatgcatag atataaggtt attaacgtta gtatattttc atatatattg
     3361 aatatggcgg ctgctactac cggtcaatta ttacttttac atatcttgat aatgggaata
     3421 atctcattat tctttctatt tacagtggct agttccattc tcttgataat gatactcctt
     3481 gcgtcagaaa tatctggaga atttgcagca aattctatgt ggttggcaac gatactggca
     3541 tcaataatta cggttatatt tttacaaaaa gtaataggca gactctacga tagattatac
     3601 tgtgtaatag tccatttccc aaatgacaat aacattcgaa aatgaaagat gaaaaatgtg
     3661 tgtataataa agcaatcata aaaaattaaa agagctcctc ctctttacca actaatatat
     3721 atataatact tggtgatcct tactaaaaat ctttaagagg ataaaggaaa cttgttttat
     3781 attttgtagc cataatatta tatttttact ctggtcgtct tatttctcac tcaccaacat
     3841 t
//
LOCUS       DATAAS010000135         1973 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_127378, whole genome shotgun sequence.
ACCESSION   DATAAS010000135 DATAAS010000000
VERSION     DATAAS010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1973)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1973)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1973
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_127378"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(763..1383)
                     /locus_tag="VHF08_02200"
     CDS             complement(763..1383)
                     /locus_tag="VHF08_02200"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF011463.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex kinase/ATPase Bud32"
                     /protein_id="HEX2067491.1"
                     /translation="MQQRKKLIKRGAEADIYLGCWYGKTTISKIRKAKSYRHKTLDDE
                     IRKSRTVNEANMISASKLTGVRSPFLYFVDPFYAEIIMEFVEGKVARDVITLKICEEI
                     GKYTGLLHTNHIIHGDLTTSNFIVSKKLVVLDFGLSYYSHRREDRAVDIRLIKEIFSS
                     AHVSFYKDAYEGFLRGYSDIIGEYETHKILKNVLEIERRGRYAQVV"
     gene            1417..1746
                     /locus_tag="VHF08_02205"
     CDS             1417..1746
                     /locus_tag="VHF08_02205"
                     /inference="COORDINATES: protein motif:HMM:NF025825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEX2067492.1"
                     /translation="MSAIEPRSGEKRILQEDCAEDKLKNGILTLTNQRLIFEKTEGRM
                     VVLSKKIGEVMLEVPLDKISSVKAEGLLLKKVTIVVDQKQYKFGVFNNSEWAKSILRQ
                     QYDNKIR"
     gene            complement(1751..>1973)
                     /locus_tag="VHF08_02210"
     CDS             complement(1751..>1973)
                     /locus_tag="VHF08_02210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="O-sialoglycoprotein endopeptidase"
                     /protein_id="HEX2067493.1"
                     /translation="AANKRLTEMLAIACKRQNRKFHICPIHFAGDNGAQIAWTGILYY
                     NKSKKGVSIKESFIRQSWRIDSVDVNWRY"
BASE COUNT          665 a          338 c          290 g          680 t
ORIGIN      
        1 tctttaaacg cagattttga tttctctact gctattttaa tcaaaaagtt ggattgaatt
       61 tcagttaaca ctattctaaa aaaatggaca tcgatagcat atttttgtaa gactgattga
      121 atctctatat atttattata attattactt gcaaagcaga ttgatttcaa caattacaat
      181 gagcagcatc atagataaaa atacatagta ttgattgcat tattaggcgg cgacttatgt
      241 atatataaca gttcatatac atacaacctt ttctaacaga gattataata tacttaaaat
      301 gatacatatt atatgattga attagcatgt cttgcaatat acgaactatt ttttaatttg
      361 cgaagttttt gtttcaatta tgtgtatacc gtataatgat aaaattatat taataaaaca
      421 atatgacaga atagaattag atagcattgt ctgattctca catccaacgt tgagttgcgc
      481 ccatatcact tagtgactgt tatgacatgt aaacatactt gtcattgaat ttatatcatt
      541 accagtgaaa atttctatat atactacact atcgtactct agatcttttc attatcctac
      601 atatccattc aagttagaat tcattatgga attcttatcg cttggccaaa ggaggcatac
      661 taagatacca tttttctctt agaattgggt tttatgggaa caggtgcatc aacaataaca
      721 aacatactta tagaatattt aaaacataaa ataattgcct tatcaaacta cttgtgcata
      781 ccttcctcgc cgttcaattt ctaaaacgtt ttttaagatt ttatgcgttt catattctcc
      841 tattatgtct gagtatcctc gtaggaaacc ttcgtacgca tctttataaa acgatacgtg
      901 cgcgctactg aatatctcct taattaatct aatatctacc gcacggtctt cccttcgatg
      961 agaataataa gacaaaccaa aatcaagcac caccaatttt ttacttacaa taaaatttga
     1021 tgtcgtgaga tctccatgaa taatatgatt tgtatgtagc aatccagtat attttccaat
     1081 ttcttcgcat attttcagag ttatcacatc tcttgcaact ttaccttcca caaattccat
     1141 tataatctcc gcgtaaaaag ggtctacgaa atacaagaat ggtgatctta ctcctgttaa
     1201 tttagaagca gaaatcatat tggcttcatt gactgttcga cttttacgaa tttcgtcatc
     1261 taaggtttta tgacgatatg attttgcttt tctaatcttt gatatcgttg ttttaccata
     1321 ccaacagcca agataaatgt cagcctcagc tcctctttta atcagtttct ttctctgttg
     1381 caatagtaat atatcatcga atttaaagat aaaaacatga gtgctataga accaaggagt
     1441 ggagaaaaaa ggatcctaca agaggattgc gcagaggaca aattaaaaaa tggtatactc
     1501 actttaacta accaacgtct catcttcgaa aagactgagg gaagaatggt agtactttca
     1561 aaaaaaattg gagaggtaat gctagaagtt cctcttgata aaatatcatc tgtaaaggca
     1621 gaaggtttac tgttaaaaaa agttacaatt gttgtagatc aaaaacaata taaatttggc
     1681 gtttttaaca atagcgagtg ggcaaagtca atcctgaggc aacaatatga caataaaatt
     1741 agataattaa tcaataacgc caattaacat ctacgctatc tattctccag gattgtcgaa
     1801 taaaggattc ttttatactt acacccttct tactcttatt ataatagagt attcctgtcc
     1861 aggcaatttg agctccatta tcgcctgcga aatggatagg gcagatatgg aattttctat
     1921 tttgtctttt acatgcgatt gcaagcattt cggtaagtct cttgtttgct gca
//
LOCUS       DATAAS010000136         7029 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4988469, whole genome shotgun sequence.
ACCESSION   DATAAS010000136 DATAAS010000000
VERSION     DATAAS010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7029)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7029)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7029
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4988469"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            307..915
                     /locus_tag="VHF08_02215"
     CDS             307..915
                     /locus_tag="VHF08_02215"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEX2067494.1"
                     /translation="MFTGIIEDVVEVKSICKINDTNKKAAVKLTISLGKISRGMKVGD
                     SMNINGACLTIIKLSNGTAEFEMVDETIKRTCLGLVKSGDKVNIERSLRLRDRLEGHI
                     VLGHVDCTGIIDEIITTQTGTHMWIRIEDKEFSGSFVSKGSVAIDGISLTVVNAKDDR
                     ISIALIPHTLTTTTLGSKSKGNRVNIEIDIISRYVNSILPKK"
     gene            971..1654
                     /gene="ribB"
                     /locus_tag="VHF08_02220"
     CDS             971..1654
                     /gene="ribB"
                     /locus_tag="VHF08_02220"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HEX2067495.1"
                     /translation="MSAIEEAIDALRDGKFVLVHDDKGRENEIDMVMAAEYVKPESIA
                     TMRNDAGGLLCLAISNEITTKLGLAYMHDIIQSLSSINPIFSKLTDGKSPYGDKPSFS
                     ITVNHRDTYTGITDIDRALTISKLAEICKKIDSGGIEEFARNFRSPGHVPILIASKGL
                     LEERRGHTELCVYLAQMSKLVPAAVICEMLDSTTYKALSINKAKEYADINGITLLESG
                     QLKTHAKAA"
     gene            1661..2125
                     /gene="ribH"
                     /locus_tag="VHF08_02225"
     CDS             1661..2125
                     /gene="ribH"
                     /locus_tag="VHF08_02225"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020248448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEX2067496.1"
                     /translation="MDKIRIAIIVSEFNSDITFQMLNKAKDHAQKIKADVRYICFAPG
                     SFDMPLLIEELLKKNDVDAAVTLGAVIKGETSHDDIVAKNAARLIADLSLKYGKPIGL
                     GITGPDMTLEQAKDRIDIVPLRAVNAAVNMAIRIKKLKEVRSQLGRTETIID"
     gene            2122..2922
                     /locus_tag="VHF08_02230"
     CDS             2122..2922
                     /locus_tag="VHF08_02230"
                     /EC_number="3.5.4.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003933 - GTP cyclohydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase IIa"
                     /protein_id="HEX2067497.1"
                     /translation="MTIQITIIRIEGYGAWTLTLGTDREAQIQMLQARIYYDVQRLFS
                     QKECLVYLNRFDEYFAITNGLSLKDHKDLQEEIATLYKNLTISMTIGKGNTSFEANVN
                     AYEARKAGNLLDRKTRIFGQTMSSSQSSKASPSTTNSNYSESVHIMHIDINGSEKISS
                     KMSPYEITALVMKLYAKLSEGFLKKGAMTFFLGGDNFMVISNNIKKEDAEIIIKSIAN
                     DIGITLNCGIGVGRNGRKAAEAATRALDTIRDLRKEGKIQPIYEIQCL"
     gene            2913..4187
                     /locus_tag="VHF08_02235"
     CDS             2913..4187
                     /locus_tag="VHF08_02235"
                     /inference="COORDINATES: protein motif:HMM:NF005552.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2067498.1"
                     /translation="MSIIIENASLLLGCDLTFVNNGFIEIGKNGIINKVGDGNYRGII
                     DEERNVIDAEGFMIIPGFINAHTHIGDSIGKDFLIDHGLDERVHPVFGAKRNILQKTR
                     PDHLKMFIRSSAISMMKKGIVAFADFREGGIEGVKLLKAAISDLPIKCIILGRVEYYF
                     NPVKNETIYHEVGIEQKEKKLSSNLVQMASDILKIADGLGISGANENTDETLIQYSKL
                     LQSKNNNTEKKKLSAIHAAESKDTNELSKSKTGMTEVYRIMQYLKPDILVHMTNANEE
                     DISIVAKKGTGVIVCPRSNGILGVGIPKVARMLKLGCTIGIGTDNVMLNSPDIFKELD
                     YLWKVSRAIEPEFISPKEILMMATVNNAKILGLNSGYIENGRSADLLFIDKNHIDLYP
                     IHDPYASIVHRASQDTIKAVMINGKFIDGVDI"
     gene            4189..4839
                     /locus_tag="VHF08_02240"
     CDS             4189..4839
                     /locus_tag="VHF08_02240"
                     /EC_number="1.1.1.302"
                     /inference="COORDINATES: protein motif:HMM:TIGR01508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone
                     5'-phosphate reductase"
                     /protein_id="HEX2067499.1"
                     /translation="MQVLINAAMTIDGKIATNLGDSTISSKQDLRRLHRLRCSVDAII
                     IGISTVIIDNPRLTVRLVKRHGTTPVRIIVDSIGRIPLDSKILKSASKITTIVAVTKR
                     ASDERVDKIKSAGAIVIVAGTRTVDLKELFFILKKMGFNKILVEGGGELNWSILQLGI
                     VNELMVTVAPRIVGGRTATTLVEGDGYERISDGIKMELIKMSRQNNGEVVLYYKLS"
     gene            complement(4845..5363)
                     /locus_tag="VHF08_02245"
     CDS             complement(4845..5363)
                     /locus_tag="VHF08_02245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor"
                     /protein_id="HEX2067500.1"
                     /translation="MHSVEYEDSFVKIAGLIGGEEYLKVARALLNTEDATDEEIASAT
                     GLRINIIRKVLYDMFGKALITGIRVKDEKKGWFVYRWRAKRDQIDNFIDNQKKKILDR
                     LQKRLEYEESSEFYHCGNKDCPRTKFDAAVELFFKCPNCKGPLNMVDNSKVKEALRYK
                     IEQITLDVSLRK"
     gene            complement(5826..6161)
                     /locus_tag="VHF08_02250"
     CDS             complement(5826..6161)
                     /locus_tag="VHF08_02250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067501.1"
                     /translation="MIIQSIREIKRINNIIIDIGNLFNDPVVIKTMEKIDLMAEAMKT
                     AAENTKNTIFELEQTGILYESKKIIMTSRKTINLRKSTQNLGEINNITKGLEKSFREL
                     INELKFKLK"
     gene            6514..6672
                     /locus_tag="VHF08_02255"
     CDS             6514..6672
                     /locus_tag="VHF08_02255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067502.1"
                     /translation="MAAAAISFVIAFVMHVPPEQTIVASIMGGILVFSGLLFRSFGKE
                     DDKYRTSK"
BASE COUNT         2504 a         1026 c         1278 g         2221 t
ORIGIN      
        1 gtattccaaa tgaatagata ctttgcatta ccttgcataa atataattta gatctatgtg
       61 atcattgctc attacatgaa ctaaaatgtt tatcttgaaa acagaaggtt atgttcgaca
      121 ttatagacat gtactgtagg aagcatattt tttcattaat tatgacatag aaaactaatt
      181 tgtttagaat tgcggataaa atcaataaaa tttaaatgaa ttagtattct aatattcata
      241 ccccctttta ttctattgga atgcgtatgt ttttagcgtg gatgaacgaa gtatatgtaa
      301 gaaaatatgt ttacaggcat catcgaagat gttgtcgagg taaaatcaat ttgtaaaatt
      361 aatgacacga acaagaaagc tgctgtcaag ctaacaatat cccttggaaa gataagtagg
      421 ggtatgaagg ttggcgatag catgaacatc aatggagcct gtctaactat tataaagtta
      481 tccaacggta cagctgaatt tgagatggta gatgaaacta tcaaacgtac ttgtcttggt
      541 ttagtcaaga gtggagataa ggtaaacatt gagagaagct tacgtctacg tgatagattg
      601 gaagggcata tcgttctcgg ccatgtagat tgtacaggaa taattgacga aattattaca
      661 actcagacag gaacacatat gtggataaga attgaagata aggaattttc gggctcattt
      721 gtatctaaag gatctgtagc aatagatggc ataagtctga ctgtagtaaa tgcaaaagat
      781 gatagaatct ctattgcttt aataccacat acgctgacca ctactacact aggatcaaaa
      841 tctaaaggca acagagttaa tattgaaata gatataatta gtagatatgt aaatagcata
      901 ctaccaaaaa agtagtattt actcgatttt cagtaaacta tataatgaat tcttgttgaa
      961 aattatttaa ttgtctgcaa ttgaagaagc aatagatgca ttaagagatg gcaaattcgt
     1021 tctcgttcat gatgataaag gacgcgagaa cgaaattgac atggtaatgg ccgctgaata
     1081 tgttaaaccg gagagtattg caactatgag aaatgacgct ggaggattac tttgtttagc
     1141 tatttcaaat gaaatcacca caaaattggg gctagcttat atgcacgata taattcagag
     1201 cctatcgagc attaatccaa tattttcaaa attaaccgat ggaaaatcgc catacggcga
     1261 caaaccatct ttttcaataa ccgttaatca ccgtgataca tatactggaa ttacagacat
     1321 cgatagagcc ttgacaatct ctaagttggc ggaaatttgt aagaaaatag attcaggtgg
     1381 aatagaggaa tttgcaagaa acttccggtc gccaggtcat gtcccaattt tgattgcttc
     1441 aaaaggtctg ctcgaagaaa ggcgtggaca caccgagctt tgtgtttatt tagcacagat
     1501 gtcaaaattg gtgccagcag cagtaatttg cgagatgtta gattccacta cctataaagc
     1561 gttatcaata aataaagcaa aagaatatgc cgacattaat ggtattacat tattggaatc
     1621 tggccaattg aagactcatg ccaaggcggc ctaataattt ttggataaaa ttagaatagc
     1681 aataatagtt tcagaattta atagcgacat tacttttcaa atgctgaata aagcaaaaga
     1741 tcacgcacaa aaaatcaaag cagatgtacg ttacatatgt tttgctcctg gttcatttga
     1801 tatgccattg ttaattgaag agcttttaaa aaagaacgat gtagatgctg ctgttacatt
     1861 gggtgctgta ataaagggag aaacatctca cgatgatatt gttgcaaaaa atgcagccag
     1921 gttgattgca gacttgtctt tgaaatatgg caagccaatc gggcttggaa ttactggccc
     1981 agatatgacc cttgaacagg caaaagacag aatcgatata gtaccattgc gtgcagtaaa
     2041 tgcagcagtt aacatggcaa ttagaattaa aaaattaaaa gaagtaaggt cacaattggg
     2101 aagaacagag acgattatag attgacaata caaattacta ttatcagaat tgaaggatat
     2161 ggagcatgga ctcttacact gggtacagat agagaagcac agattcaaat gctgcaggca
     2221 agaatttatt atgatgtaca gcgattgttc tcacagaagg agtgtctcgt atatttaaat
     2281 agattcgatg agtattttgc aataactaat ggtctttcac taaaggacca taaagatctt
     2341 caggaagaaa tagcaactct atacaaaaac cttacgatat caatgactat tggaaaaggc
     2401 aatacatcat ttgaggcaaa tgtaaatgct tacgaagcaa ggaaggcagg caaccttcta
     2461 gataggaaaa caagaatttt cggacaaact atgtcttctt ctcagtcttc aaaagcttca
     2521 ccatctacta caaattctaa ctactctgaa tctgtacata taatgcatat tgacattaat
     2581 ggttctgaaa agattagctc taaaatgtcg ccatatgaaa ttacagcatt agtaatgaag
     2641 ctctatgcta agttatcaga aggttttctc aaaaaaggag caatgacatt ttttcttgga
     2701 ggagacaatt tcatggttat atcaaataat ataaaaaaag aagatgccga gataattatt
     2761 aaatctattg ctaatgatat aggtattaca ttgaattgtg gaataggtgt cggaaggaat
     2821 gggagaaaag ctgctgaggc cgccaccaga gcactggata ccattagaga tttgagaaag
     2881 gaaggaaaaa ttcagccaat atatgaaata caatgtctat aataatcgag aatgcaagct
     2941 tgttgcttgg atgtgatcta acttttgtta acaacggttt tattgaaatc ggaaaaaatg
     3001 gaataataaa taaagttgga gatggaaatt atcgtgggat tatcgatgaa gaaagaaatg
     3061 ttatagatgc agaaggattt atgataatac ccggatttat taatgcccat acacacatcg
     3121 gagattcaat tggtaaagat ttccttattg atcatggact agacgaaaga gttcatcctg
     3181 tttttggagc aaaaaggaat attttgcaaa aaactagacc ggatcacctt aagatgttca
     3241 ttagaagctc agccatatca atgatgaaaa aaggaatagt tgcttttgca gacttcaggg
     3301 aaggaggtat agaaggagtt aaacttctaa aggctgcgat atctgatctt ccaattaaat
     3361 gtataatact tggcagagtt gaatattatt tcaatccggt aaaaaatgaa actatatatc
     3421 atgaagttgg aatagaacaa aaggagaaga aactttcttc aaatttagtg caaatggctt
     3481 ccgatatttt aaaaatagct gatggattag gaatcagtgg tgcaaatgaa aatactgatg
     3541 agacacttat acaatacagc aaattattac aaagtaaaaa taataataca gagaaaaaga
     3601 aattaagtgc aattcatgcc gcagagtcta aagatacaaa tgaattatcc aaatcaaaaa
     3661 caggtatgac cgaagtatat agaataatgc aatatttaaa acctgacatt cttgttcata
     3721 tgactaatgc caatgaagag gatatttcta tagtagcgaa gaaaggaaca ggagtaatcg
     3781 tatgccctag atcaaatgga atactaggag tcggtattcc aaaagttgca agaatgttaa
     3841 aactaggatg cactattggc ataggaacag ataatgttat gcttaattct cctgacatct
     3901 ttaaggaatt ggattatcta tggaaggtat caagggcaat agagccagaa ttcattagtc
     3961 ctaaagaaat acttatgatg gctacagtaa acaatgctaa aatccttggc ctgaattccg
     4021 ggtatataga aaatgggcga tcagcagatc ttttatttat agacaagaat catattgatc
     4081 tctatccaat tcatgacccc tatgcctcaa tagttcatag agcgagtcag gataccatta
     4141 aagctgtgat gattaatggc aagtttatag atggagtaga tatctaattt gcaagtactg
     4201 ataaatgcag ctatgacaat tgatggcaaa attgcgacta atcttggaga ttctacaatt
     4261 tcttcaaaac aagatttaag aagacttcat agattgcgat gttctgttga cgcaattatt
     4321 atcggaatat caactgttat tatagataat ccaagactca cggtaaggct ggttaaaaga
     4381 catggaacaa cccctgtgag aataatagta gacagcatag ggagaattcc tcttgattca
     4441 aaaattctaa agagcgcatc taaaattact acaatagtag cagtaacaaa acgagcatct
     4501 gatgagagag ttgataaaat taagagtgct ggtgcgatag tgattgttgc aggaacaaga
     4561 actgttgact taaaagagtt attttttatt cttaaaaaga tgggatttaa taaaatactt
     4621 gttgaaggag gtggagaatt aaattggtct atcctacaat taggaatcgt gaatgaatta
     4681 atggtaacag ttgcacctag aattgtaggt gggagaacgg ctaccacatt agtagaagga
     4741 gatggttatg aaagaatctc agatggtata aaaatggaat tgataaagat gtcaagacaa
     4801 aataatggag aggtagtttt gtattataag ttgtcataat tttattattt tcttaaggat
     4861 acatctaatg ttatctgttc aatcttatag cgtaatgctt cttttacctt actgttgtct
     4921 accatattga gcggtccttt gcagttgggg cacttgaaaa ataattcaac ggcagcatca
     4981 aattttgttc gaggacaatc tttatttcca caatgataaa actcagagga ctcttcatat
     5041 tctagacgtt tttgcaatct gtcgagaatt tttttctttt gattatctat aaaattatca
     5101 atttgatcac gtttcgctcg ccatctatag acaaaccatc ctttcttctc atcttttacc
     5161 cttatacctg taattagtgc tttgccaaac atatcataca gaacttttct tataatgttt
     5221 atccttagac cagtggcact tgcaatttct tcatcggtcg catcttctgt atttaaaaga
     5281 gcacgagcaa ccttaagata ctcttccccc ccaattagac cggcaatttt aacaaaagaa
     5341 tcttcatact caactgagtg catctataag tatatctcta tttttagata tatagttacc
     5401 gacttctatt ttcttcaaca caatcttaaa gtaaggatat catgatcctg ttactctttt
     5461 attagatgat atactgcact ataagtatta ccgacttcaa tttgaactaa aaggggttat
     5521 ctgactaata aatgacaaaa tatgatgagc atatgacgag tatcagaaag atagagccgt
     5581 caatgctaat gggaaatggg ttaaaaactg atttcctata ttatatccac tcagaataac
     5641 atataaataa ttatgaagtg tgttccttca agaaaatttt gtgaattgta ctaagtggag
     5701 tataattggg atattcacat agtctattat accgtagtca gaaaatttta taatgcttgt
     5761 tacaatagta tgctacattc agcatttttc tttatcatca ttttctttta tctagaatat
     5821 tttacctatt ttaacttgaa cttcaattca tttattaact ctctaaatga cttttccaat
     5881 cctttagtaa tattattaat ttctcctaga ttttgagtac tctttcgtaa attgattgtc
     5941 tttctagaag tcattattat ctttttggat tcgtacagga tacctgtttg ctctaattca
     6001 aatatagtat tttttgtatt ttcagccgca gttttcatag cttctgccat tagatctatt
     6061 ttttccatag ttttgataac tacgggatca ttaaacaagt ttcctatatc aataataata
     6121 ttgttaattc gttttatttc tctaattgat tgaattatca tctttatgta tacaataata
     6181 atttattgta tttattatac ctttaatgaa tattaacaat attagtccgc aattaatgat
     6241 aatctgttat aaacaattta ttcattttga taaaatgaaa taaaataaac agagatgacg
     6301 atagtgtttt caatcataga tgaatataat gataagagac gtattagatt taatatatag
     6361 gctaattaat agcataatta attatcaaaa taagcaatga atatctccat aacggatgaa
     6421 aaaattataa tgctcttaat gcgcttatta tttagttggt gattagaaat agatagatct
     6481 actcgtgcca ttaaagaatg gttaccttta agtgtggcag cagccgcgat ctcattcgta
     6541 atcgcctttg taatgcatgt tccaccagag caaactattg ttgcctcgat aatgggagga
     6601 attttggttt ttagtgggtt gttattcaga tcttttggta aagaagatga taaatatcga
     6661 acatctaaat aattaactca aagaaatgat agttctgttt ttcatatgat ttatttaata
     6721 tatggaatta cactagtatg ttaaacttaa tactagcgcg gtgatggttt ctattccata
     6781 tattttaaaa gtttgtattg ccctgggaca taattcagga tatatatatg tagacatgaa
     6841 aaaattctac tacaaataca agagaaacga cctttgaata gataaaaact cctctatgtt
     6901 attgtatagt aataattaca tgcaaaggtt gggataatga tgagatctaa attctaatag
     6961 tagatttttc aaatcttcta actttcttaa tggagtattt tgttgctaat gttgcaataa
     7021 atatgacta
//
LOCUS       DATAAS010000137         1777 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1755622, whole genome shotgun sequence.
ACCESSION   DATAAS010000137 DATAAS010000000
VERSION     DATAAS010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1777)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1777)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1777
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1755622"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            301..1308
                     /locus_tag="VHF08_02260"
     CDS             301..1308
                     /locus_tag="VHF08_02260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX2067503.1"
                     /translation="MQIKQQQIDLFDKQLLNDIQWVFPLVDRPYLEISKRHNMSEDEV
                     MRRIAYMKDIGLIRQINAIFDTRRLGYKSALVAFAVMPDKLDSVANEVNKHPGVSHNY
                     ERNHDFNMWFTLAVPPYGDMKRDLDRLASLDGVIKYRLLPTLKLYKIGVRLDMVNDDA
                     EKPKPMDEVKQLNPQKIEITENDKYFIRELQKDLKVIPEPFKEMAENLRITTTELFAK
                     AKEYEKNGVMRRFAAILRHRDAGFSANGMVVWQVPDEKIDEIGYKLAAFPQVSHCYRR
                     PVYSDWQFNLFSMIHARTLEAAEKIAVEMSEIVEIKDYRILFSSREFKKERVKYFEES
                     N"
BASE COUNT          621 a          276 c          290 g          590 t
ORIGIN      
        1 gctagatttt ctatagaaat attatttaac tactatatct ctcatcaagg gtcgattctt
       61 aattgttata ttgatttaga tatacacgag tattgtcaga ttcaagatga tagtatcgtt
      121 tctattctgt tcaaatctcc aaattcaact aatatttttt tattcaataa tgtaattaat
      181 taaaagactt taataagtat acaatgattc actggaattt aatgaaggta caaaaatcac
      241 tataatagta tgtggataag tatttaatag attaattgta ctacctttac tctgactgca
      301 atgcaaataa aacagcagca gattgatttg tttgataaac aacttttgaa cgacatccaa
      361 tgggtttttc cacttgtaga taggccttac cttgagattt ctaaacggca taatatgtct
      421 gaagatgaag ttatgcgaag gatcgcatac atgaaagata taggtttaat tagacagatt
      481 aacgcgatct ttgataccag gcgattaggt tacaagagtg ctcttgttgc atttgcagta
      541 atgcctgaca agcttgattc tgtcgcaaac gaggtaaata aacacccagg agtcagtcat
      601 aattatgaaa gaaaccacga tttcaatatg tggttcacac ttgctgttcc tccttatggt
      661 gatatgaaaa gagatttaga cagactggct tcacttgatg gagttataaa atatcgtttg
      721 ttacctacgc tgaaacttta caagattgga gtccgactgg acatggttaa tgatgatgca
      781 gaaaagccaa agccaatgga cgaagttaaa caattaaatc cacagaaaat tgagattaca
      841 gaaaacgaca aatattttat ccgtgaatta caaaaggatc tgaaggtgat tccagaacca
      901 tttaaagaga tggcagaaaa tctcagaatc acaactacag aactctttgc aaaggctaag
      961 gaatatgaaa aaaatggcgt aatgcgccga ttcgcagcaa tattgcgcca tcgagacgca
     1021 ggtttttctg caaatggtat ggtagtatgg caggtgcctg atgagaagat cgatgaaatt
     1081 ggctataaac ttgcagcttt tccacaagta agtcactgct atcgtagacc agtatattct
     1141 gactggcaat tcaatctatt tagcatgatt catgcccgta cattggaagc agcagaaaag
     1201 attgcagttg aaatgtcaga aattgttgaa attaaagact atagaattct gtttagctct
     1261 agggaattca agaaagaacg agtaaagtat ttcgaagaaa gtaactaata tacacagtct
     1321 acattttctc attctatttg attcttatta atatatattg tttcatttca tctacttctt
     1381 ttataatatt caataaactt atccttttat taaaaattta ctatatttat gaatccttta
     1441 ttaaaaatga tatatattat tatctaaatt ctatgtttat ataatcaaaa taactatctg
     1501 ttaaataata ttagtattgt cgaaggcgat gtcaatacaa tacacttcta acacacttca
     1561 aaatacaaat aaggcaagga aaaattgaat ctattttttg agatatgcta attgttttta
     1621 atttagctca atattgtatt tactcgtttt attagatctt cattctcaat cggttttgga
     1681 acaaaatatc tttcgcctaa tttaggaaac acttcttttc taaatacctc atattcctgc
     1741 aattcagtca aagctgtcaa aaacattgtc ttgacct
//
LOCUS       DATAAS010000138         1741 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4990544, whole genome shotgun sequence.
ACCESSION   DATAAS010000138 DATAAS010000000
VERSION     DATAAS010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1741)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1741)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1741
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4990544"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(353..574)
                     /locus_tag="VHF08_02265"
     CDS             complement(353..574)
                     /locus_tag="VHF08_02265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067504.1"
                     /translation="MKNEDRSSEAIKYWIPLALVAAGIVFVIAFILSLPLDRTFVASA
                     LAAIMVFSGFFFRSFGKDSDQYKQKTDSV"
     gene            955..>1741
                     /locus_tag="VHF08_02270"
     CDS             955..>1741
                     /locus_tag="VHF08_02270"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX2067505.1"
                     /translation="MISTLRSLRMAPKLEFFPIEDKTFGVGHRRPSVSIIIPARNEEG
                     HIKKCLESLLEQNYLNIEIIAIDDSSSDRTREIILEYSNLARSRTKIILVDAQDKPND
                     WSGKNWACYQGYLRASGDLFLFLDADTVITSSRTISTAIDYLEEHDLDALTVRPKLIC
                     QDSWAKITLPMLSTLLHVRRMQQINNPLNKTSGYLFGCFYLITRNSYEAIGTHRAVKG
                     EIIEDAAIGKRIRNQNYLLRAVIGDGCIESIFRGRWEVLQRIVV"
BASE COUNT          551 a          311 c          336 g          543 t
ORIGIN      
        1 ggttattgca aggactaata atacaaatga attggcatga cgatcataat gctcaaaaaa
       61 atatctgctt ttaatatcca ttgatgcatt acgagattag taagcctaag aagaaaccct
      121 cttgttccag taagagtaac aatcccgaac aacatcatag aaaaatttta gattatattt
      181 acttacggct gactacactc cgggactacc gttgtgacta tcaattcgta ttggagcatg
      241 cgattgcgac acaaatttaa catattttac aatttaaaac gatccgctaa aattgaccct
      301 ctaatctcat cttataatta tacgtcgatt tgtcatctct ggaatgcaat ttctatacag
      361 agtctgtttt ttgtttgtat tgatcactgt ctttaccgaa tgaacggaag aagaagccgc
      421 tgaaaaccat aatcgctgca agggctgagg cgacaaaagt tctgtcaagt ggcagactta
      481 atatgaatgc aattacgaat acaattccgg ccgcaactag ggctaagggt atccaatatt
      541 ttatggcttc ggaagatcgg tcttcatttt tcacagtgct tcaactatat agtgatatca
      601 tctatttgat atactatact actgtcaggt atcagtaaag cctcatgcca gctcgacatc
      661 gagagggagt tcttaatgcg gatatcaccc tcatcgttat taagccatgg taatcattat
      721 gagtgtattc tattgcatat gaaaaagagg gaaatctccc atactataaa tagtacatgg
      781 tgcttcgtac ttcgatattg ttaaactttt tttcaaaatt atacacagtt acattaatct
      841 cgctcctaat tagatatatg aggtgtcatt aagttggttc ctttttccac tcaaattctg
      901 ttctcgatat ttttttcttc aatattggcc gtcttaataa tttggcttta tttcatgatc
      961 tctacattaa ggtcacttag gatggctcca aagttggagt tttttcctat cgaagacaaa
     1021 actttcggcg taggtcaccg tcgtccaagt gttagcataa ttatcccagc gcgaaatgaa
     1081 gagggacata ttaaaaaatg tttagagagc ttgctggagc agaattactt aaatattgaa
     1141 ataattgcaa tcgatgattc atcctctgat cgaaccaggg aaataatact agaatacagt
     1201 aatttagcaa gatcaagaac caaaataatt cttgttgatg ctcaagacaa accaaatgac
     1261 tggtccggaa agaactgggc ttgctatcaa ggctatttaa gggcaagtgg ggatttattc
     1321 ctatttctag atgcagatac agtaattaca tcttcccgta cgatttcaac tgctattgat
     1381 tatcttgagg aacatgacct ggatgctctt acagtgaggc ctaaactgat atgtcaggac
     1441 tcatgggcca aaattacttt gccgatgcta tcaacgcttt tacatgtaag acgcatgcag
     1501 cagataaaca acccgctaaa taaaacgagt ggatatctgt ttggatgttt ttacttgatt
     1561 acacgaaaca gttatgaagc tattggtact catagagcgg tgaaaggcga aataatagag
     1621 gatgctgcca tcggtaagag aattagaaat caaaactatt tgttgagagc agttattggt
     1681 gatggctgca ttgaatcaat ttttagaggg cggtgggagg tattacaaag aattgttgtt
     1741 c
//
LOCUS       DATAAS010000139         2402 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_130334, whole genome shotgun sequence.
ACCESSION   DATAAS010000139 DATAAS010000000
VERSION     DATAAS010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2402)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2402)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2402
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_130334"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..343
                     /locus_tag="VHF08_02275"
     CDS             <1..343
                     /locus_tag="VHF08_02275"
                     /inference="COORDINATES: protein motif:HMM:TIGR02246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SgcJ/EcaC family oxidoreductase"
                     /protein_id="HEX2067506.1"
                     /translation="LVGFDGMHLRGRQEIASFHQQLFDTFVKGSRLVGKIRNVRFLTP
                     DVAIMHAVGGTIMDGQTDIEPERNSVHTLVAMKGNDGKWRLAAFQNTRAQYIGRPDMS
                     NELTEELRKEM"
     gene            464..1471
                     /locus_tag="VHF08_02280"
     CDS             464..1471
                     /locus_tag="VHF08_02280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067507.1"
                     /translation="MISNNRLLSMKFLVLTLTLIVMSGTALYTGINSILNNNQVQAQQ
                     QEQINIDKVWETLPVLKTPESVIYAPKHDILFVSNIDGKPDQKDQKGFISKVSLSNGS
                     ITELNWLTGLDAPKGMAIYNNSKLYVSDITDLVEIEIGNGKITNRYNAPGSKFLNDVV
                     VDNQGNIYVSDTGTNSIYILDRNLMNNNNNNNNSTSLQIWLQSPKLDAPNGLYFNDKN
                     NKLIVSSNGADPEKPGGSIKVVNLQNRTITNLGKEGSTSPIGILDGIELDATTGKHYY
                     VTDNPAGKIYIINADGTGYGTLIDLGKQGSADLAFVIGQNMIIIPIMQDNNLVAYKLA
                     E"
     gene            1999..2310
                     /locus_tag="VHF08_02285"
     CDS             1999..2310
                     /locus_tag="VHF08_02285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067508.1"
                     /translation="MNEIKLVIFGLIALVIAAILFWLLDEPEILIDKEIEITIALGVG
                     LLILILDRRADRRIHEIIHEQHILINLMHKKIDEQSELIKNIQKMSSSNHKDHVSNKD
                     S"
BASE COUNT          887 a          376 c          412 g          727 t
ORIGIN      
        1 tcttgttggc tttgatggta tgcatctcag aggacgtcag gaaatagcat catttcatca
       61 gcaacttttt gacacatttg ttaaaggcag tcggttggta ggaaagatta gaaatgttcg
      121 atttcttact ccagatgtag caataatgca tgcagttggt ggaacgataa tggatgggca
      181 aacagacatt gaacctgagc gaaattcagt ccatacactt gtagccatga aaggaaatga
      241 cggtaaatgg cgccttgctg catttcagaa tacacgagcg caatatattg gaagaccaga
      301 tatgtctaat gaactgacag aagagcttag aaaggagatg taattaagca gatgtctaaa
      361 tgttgcctac ttgttgcatc tagtattctt tccgctttat tctcattact gcctatagtt
      421 aagatcttta ttaattattt tatacattaa atgacgaaat aggatgattt caaataatag
      481 actactttca atgaaattct tagtgcttac tctaacttta atagtaatgt cagggaccgc
      541 attatatact ggaattaata gtatattgaa taataaccag gttcaagcac aacaacaaga
      601 gcagataaac attgacaaag tatgggaaac attacctgtt ttgaagactc cggaatcagt
      661 aatttatgca ccaaaacacg atatcttatt tgtttctaat atagatggaa aaccagacca
      721 aaaagatcag aaaggattca tctctaaggt ctctctttct aatgggagca taactgaatt
      781 gaactggcta actggactag atgctccaaa aggtatggct atttataaca atagtaaact
      841 gtatgtttca gatatcacag atcttgttga gatagaaatt ggtaatggaa aaataactaa
      901 tcgctataat gcaccaggaa gtaaatttct caatgatgtt gtagtagata atcaagggaa
      961 tatctatgta tctgacactg gtactaacag tatctatatt ctagacagga atcttatgaa
     1021 taacaataac aataacaaca atagtacatc tttacaaatc tggctacaaa gcccaaaatt
     1081 agacgcccct aatggtttgt actttaatga taaaaataat aaattaattg ttagttccaa
     1141 tggcgcagat cccgaaaaac cagggggaag tataaaagta gttaatttac aaaatcgtac
     1201 tatcactaac ttaggaaaag aaggatcgac gtcccctatt ggtattctag atgggattga
     1261 acttgatgct actactggaa aacattacta cgtcactgat aatcctgcag gaaagatcta
     1321 cattattaac gccgatggaa caggttatgg aactttgatt gatttaggaa agcaaggaag
     1381 tgctgaccta gcgttcgtca taggtcaaaa tatgattata atacctataa tgcaagataa
     1441 taaccttgta gcttataaat tagcagaata gacttctatt tatctaaaaa gccaatttat
     1501 tattgaaaga tgtctcgatg tatctattat ggaactaaaa acacagcata gaagtttaag
     1561 aattctctct ttttcctaat atttttgaac ctatttttaa gactatatca tcactaattt
     1621 cactgaactt gctaactatc cggttattat actacggagt atgagtaatt atcggtgcta
     1681 tactaaagaa aggagtgagc tattaagaaa tgacaataaa actatctatg acattaaaac
     1741 gtatcacaac tatatactaa ttctagcaat accaagataa ttagtgaatt atcattatat
     1801 taagagcatt gggcctgcgg aaaactatca aaatcagaac ctcaaagcaa atcattagtt
     1861 tgtaatcttc aaggtccaga aatcacacat cttctaggac attagatatc attcttatac
     1921 taataatatt atcctatcaa tcagtaacgc tactatgcta aaaaatgtaa atagaactat
     1981 aaaaaccatt tatcttcaat gaatgaaata aaattagtca tttttggact aatagcactt
     2041 gtaattgctg cgatattgtt ctggctttta gacgaaccag aaatactaat agacaaggaa
     2101 atagagataa caatagcatt aggagtagga ttgctgatat taattttaga tagaagagct
     2161 gaccgccgta ttcatgaaat tattcatgaa caacatatat tgattaattt aatgcataaa
     2221 aaaattgatg aacaaagtga gctgatcaaa aatatacaaa aaatgtcatc atcaaatcat
     2281 aaagatcacg tgagcaataa agactcctag tgagattgtt gagtatacat ggtagtgagc
     2341 atacagtgcc attccatgcc gatctttatt catgcaatag ttgacaatat ataatgtgtt
     2401 aa
//
LOCUS       DATAAS010000140         2796 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1757871, whole genome shotgun sequence.
ACCESSION   DATAAS010000140 DATAAS010000000
VERSION     DATAAS010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2796)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2796)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2796
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1757871"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(228..563)
                     /locus_tag="VHF08_02290"
     CDS             complement(228..563)
                     /locus_tag="VHF08_02290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067509.1"
                     /translation="MSYVSDDRNYTDNRQSGVDAPVERVGDIRGDPPSNETTDRNTAS
                     KMANLLEGLQFPTTKEEIKDHINRKSPSMGNRINDVMEAVQNNLREDIQYNSVYDIEI
                     AARLVKKND"
     gene            1244..2254
                     /locus_tag="VHF08_02295"
     CDS             1244..2254
                     /locus_tag="VHF08_02295"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX2067510.1"
                     /translation="MVENIANDAGGGSIGSSYQRQTVLNLYNSGISADIISLQLDMGK
                     EEVDKIIETANTEEERKKISIRQASDTPSLGSFYLDAVVDLDSAIKMAQSRVWKALKV
                     APEFNISFKETQNVLEKFAKSKVTLVILHIDLVGSTRLSMTLPVDRLATIIQAFTQEM
                     SLMIAAYGGYVLKYVGDAILAFFVVGDNYDLYLPCINAVYCARSMIKVMRQGINPILN
                     QYDYPEMSVRVGIDVGENVIVQFGWDALNYVSDSKDKNIENQTLIKKPHLDILGYTIS
                     IATKMTALAQPDQIVIGQSVYDSLDDSQKSNFRVLPVNPEVWNYVSENTGNIYRLYGS
                     IR"
     gene            2394..2468
                     /locus_tag="VHF08_02300"
     tRNA            2394..2468
                     /locus_tag="VHF08_02300"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2429..2431,aa:Gly,seq:ccc)
BASE COUNT          895 a          437 c          478 g          986 t
ORIGIN      
        1 aataataagt atgaataaga ttcctcagga ctttagagta tgcagattac attgtaccaa
       61 aactgtgtat gaattggatc tttagtgatt tagtattatt ttgatagttt atttaatgtc
      121 atttattcta actaatgatt ctatacaaga tcttccaaga tacaataagg aaggattaga
      181 agagaaaggt taattttgaa ttttaaagct taataatatt tctattatta atcatttttc
      241 tttactaatc tagctgctat ctcaatatca tagacgctat tatattgaat gtcttcccta
      301 agattatttt gaacagcttc cataacatcg ttaattctgt ttcccatgct tggagatttc
      361 cgatttatat gatctttgat ctcctctttt gtagttggaa attgtaaacc ctcaagtaga
      421 tttgccattt ttgatgctgt atttctatca gtggtctcat tactaggtgg atctcctcta
      481 atatcgccga ctcgttctac cggtgcatct acccctgact gtctgttatc agtataatta
      541 cgatcatctg atacataaga cattgattta tcttctacct ctatctatat caagtggtta
      601 tgatttctca taaacatttt agttaatcgt tctattcgat catctaaatt taactccgag
      661 ttcaggcaag cggacgatat cataaaatat tataatgata tcacccaaaa tattgcatca
      721 ctgaataata atctctctct aaagaagtaa gaagatgagt tgctttgtta tttttcgagt
      781 ttcaatttgc ttttcattgg tgcatttgta gtgtgaataa agtttgttaa attttaacac
      841 atcttctatt tcacatgata cacttttgca gaatggtata gcactgtatt attgactact
      901 ttatatttgc tcattttagt gattattgta aatgtaacat ctgattaaaa gctatagttt
      961 aaaatttttg tttgtcttag ttcataattt caatgggctg tgatttaata tgttgcgaaa
     1021 tcaacaaggc catttgttac tatataattt tattttttcc tcacttctta tcactccaat
     1081 taataaacct gtcataagaa atttttaata gctatactta acatctatat atagttagat
     1141 agaccatatg gttggcttct ctcttatttt cataaataaa tcacatgaat atctcataag
     1201 agatgaagtc aaattaatac tgtaaattag gaataaaaaa gatatggttg agaatattgc
     1261 taatgatgct ggcggtggta gtattggtag tagttatcaa cgtcagactg tattaaattt
     1321 gtataattct ggtatctcag ctgatataat atctttacag ctcgatatgg gtaaagagga
     1381 agtagacaaa attattgaga ccgcaaatac agaagaagag agaaaaaaga tctctatcag
     1441 acaagcatca gatactcctt ccttgggttc gttttatctt gatgcagtag ttgacctgga
     1501 ctctgcgatt aagatggcac aatcaagagt ctggaaagca ttaaaagtag caccggaatt
     1561 taatatctca tttaaagaga cgcaaaatgt attagaaaaa tttgctaaat ctaaagtaac
     1621 gctagtaatt ttgcatattg atcttgtagg ttcaaccagg ctatctatga ctcttcctgt
     1681 agacaggctt gcaacaataa ttcaagcatt cactcaagaa atgtctctta tgatcgcagc
     1741 gtatggtgga tatgtattaa agtatgtcgg agatgcaatt ctggcatttt ttgttgtggg
     1801 tgataactat gatttgtatt taccgtgcat caatgcagta tactgcgcaa gatctatgat
     1861 taaagtaatg cggcagggta taaatccaat tctgaatcag tatgattatc ctgaaatgag
     1921 tgtacgggtt ggaatagatg ttggggagaa tgtaatagtc cagtttggat gggatgctct
     1981 caattatgtg tcagacagta aagataaaaa tattgagaat caaacactaa taaaaaaacc
     2041 tcatcttgac attttgggtt atactataag cattgcaaca aaaatgactg cacttgcaca
     2101 acccgatcag attgtgatag gccaatcagt ttatgactcc ttggatgatt ctcaaaagtc
     2161 aaatttcaga gtgttacctg ttaaccctga agtctggaat tatgtaagtg agaacactgg
     2221 aaatatttat cgtctctatg gaagcattag ataatacaga aagtgttgat aataaatgtg
     2281 tacatcttct tggcattgca taggtaatcc cttttttctt ttagatcctc tacaagttac
     2341 gtatctatca caaacttatt attccttatt ctaaatttga aatctaaatt aaagcgaagt
     2401 tagcccagcc tggttaaggt acgagcttcc caagctcggg atcgcgggtt caaatcccgc
     2461 acttcgcatt ttattacagc agctgattca ataaaaaaga taatcaattc ttacataata
     2521 gacagatttt atatggaaaa ttgctaatag gttatatttg tatataaaat gtgacatgac
     2581 aaattattgt attttttgcc tgattaaaag tagttgctct gttcttgata gacatactgt
     2641 ttgttagaaa tctaacctga atatgtgtac actacgggca tattgggata gtcatgctat
     2701 ggatcttctg cgtaaagttc cataatagtt ataactgatt gaagccctag gtgagattcg
     2761 aacccacgac ctaaggttta cgaaaccttc gctcta
//
LOCUS       DATAAS010000141         2984 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_131618, whole genome shotgun sequence.
ACCESSION   DATAAS010000141 DATAAS010000000
VERSION     DATAAS010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2984
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_131618"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            383..592
                     /locus_tag="VHF08_02305"
     CDS             383..592
                     /locus_tag="VHF08_02305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067511.1"
                     /translation="MATINGETITGIALAFLAILFIYAGLVNEVWAKILLADYFILAM
                     GIAFIVYGIYSMRKHRTSSVKEHSH"
     gene            complement(616..2424)
                     /locus_tag="VHF08_02310"
     CDS             complement(616..2424)
                     /locus_tag="VHF08_02310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2067512.1"
                     /translation="MEKDSIKSYSNFNGKNVVITGSGTGIGQAIAKKFAENGANIIIM
                     GRRKEPLDSTSTLLIDIFNRYGYSSKIRSFPGIDVSDEHGINEMFKTIKQEFGKIDIV
                     VNNAGISGPVKTFTNANFKEFKECVAIHLTGTFWTSIQSLQAMEPGAKIITIGTFFTE
                     ENRYEQRPYRFRTPYTAAQGAKNRLAEALAWELIDKGIRSVATNPGPVHSDRIYKTVY
                     PKAAAEFLRIGGFPGLSSIEVERAATTALSLLGEENATVKKGIEEIAKELTKSRGIES
                     SGETEELFNVVSNMLGKIQEIAEKIQNNTSKMSVDGQFLRQEDVAEMVLNLSDQEISK
                     LINGRIIPNDHIFYPVKPIVGTVLEADVPASINGKVVVLTITSSAKKDLDRVEKFARI
                     LSSFGAKQIIILTRNSSDLLRFKDFHSHSIDLSSEEHVSSILKTVRTKFGALDAVVHF
                     TGDYDYNIPLLTLSRNQWDSLVENFINIPALITREAVNKMAAEGATEEPIKYKGSSGI
                     LILVGPDAPTGKKVSGVIRARSEVFRGALRPYTATVNQELRDVLGSNIRLYLILGGNI
                     EGADSDTDNLINSLVKLISSASLRRNETIYYIDETV"
BASE COUNT          916 a          562 c          490 g         1016 t
ORIGIN      
        1 tcctattcca aatccaatta gccagaatat aaagatcgta agcctcctag acaatttgac
       61 ccccgcctct gtaaaaggtt ttgcaaatca tttttacgga gcttcgtcgt ttcacatctt
      121 ttattttttc atacaataat aagtatgatt gtcaaatttt ctaaatagga taattacaaa
      181 attgaacaga ctatgactgt tagttaaaaa acgttgagtt atccgggtac tgaaatcata
      241 cgatcgttac gatccaaggt ctaatccatc aagcgtaaca aattagaggt tacactatat
      301 gcaacttatg tagatcgtca attctcagag aataaatatt tcttcgaaaa tactatatac
      361 ttccattgtg aaaggcctta ttatggcaac aattaatggt gaaacaataa caggaattgc
      421 attagctttc ttggcaattc tttttatcta tgctggcctt gttaatgaag tctgggctaa
      481 aatattgctt gcagattact ttatcttggc catgggaata gcgtttatcg tctatgggat
      541 atattcaatg cgcaaacata gaacaagctc tgtcaaggag cactctcatt agttaatttt
      601 gttagtctga atttttcaga ctgtttcatc aatgtagtat atcgtttcat ttcttcttaa
      661 agacgcagat gagattaatt taactaagga atttattaag ttatcagtat ccgaatcagc
      721 tccttcaata ttgcctccaa gtatcaggta aagtcgaata ttcgagccga gcacgtcgcg
      781 cagttcttga ttgacagttg cagtatatgg cctcaaagca cctctgaata cttctgatct
      841 tgctctgatt acgccagaaa cttttttacc agtaggggcg tcaggtccaa ctaatattaa
      901 aattccacta gatcctttat atttaatcgg ctcttccgtt gcgccttcag cagccatttt
      961 attaactgcc tctcttgtaa ttagggcagg aatatttata aaattctcaa caagagaatc
     1021 ccattggttt ctacttagcg ttaaaagggg aatattgtag tcatagtcac cggtaaaatg
     1081 tactactgcg tctagagctc caaactttgt tctaactgtc ttcaagatac tactcacatg
     1141 ctcctctgat gagagatcaa tactatggct atgaaaatcc ttaaatcgta aaagatcaga
     1201 tgaattacga gtcaatataa ttatctgttt agcaccaaag gagcttagaa ttcgtgcgaa
     1261 tttctccacg cgatctaggt cttttttggc agaagaggta atagtaagaa ccacaacttt
     1321 tccatttata gatgcaggta catcggcctc gagaactgtt cctactatag gctttactgg
     1381 atagaatata tgatcatttg gaattatcct accatttatc aatttgctaa tttcttgatc
     1441 agacaaattc aataccattt cagcaacatc ttcttgccta agaaactgtc catcaactga
     1501 cattttactt gtattgttct gtatcttctc tgcgatttct tggattttac cgagcatatt
     1561 tgaaacaaca ttgaagagtt cttcagtttc accagaagat tctattccgc gtgatttggt
     1621 taattccttt gcaatctctt caatgccctt tttgacagta gcattttctt cacctagtag
     1681 agacagcgcc gtagtggcag ctctttctac ttcgattgat gacaatcctg gaaatcctcc
     1741 aattcttagg aactcggcag ccgcctttgg ataaactgtt ttataaattc tatccgagtg
     1801 gacaggtccg ggattagtgg ctactgacct gatacctttg tctattaatt cccatgctaa
     1861 agcttctgct aatctattct tagctccctg cgcggctgta taaggagttc tgaatctata
     1921 aggtctttgc tcatatcgat tttcttctgt aaagaaagtt ccgattgtaa ttatcttggc
     1981 ccctggctcc attgcctgta ggctctgaat tgatgtccaa aaagttcctg taagatgaat
     2041 agctacacac tctttgaact ccttgaaatt tgcattagta aatgtcttaa cgggacctga
     2101 tataccagca ttattaacga ctatatcgat ttttccaaat tcttgtttaa tagttttgaa
     2161 catctcgtta attccgtgct catcagatac atctatacct ggaaaagatc ttattttact
     2221 agaatagcca tacctattga aaatatcaat taatagtgta ctcgtgctat ctaacggctc
     2281 ttttcttcta cccatgataa ttatattagc accattttca gcaaattttt tagcgattgc
     2341 ctggcctatt ccagttccac tgcctgtgat aactacattt ttaccattaa agtttgaata
     2401 agattttatt gaatctttct ccatagattt gggacaatat atacattatt aaagttaacc
     2461 ttgatgacat tataattaaa aaattaaaaa aacctgaaga gttaatactt attctaatag
     2521 tatagtatct attgatttgc tctttccatc aggcttctca gaaggttacc aatactaaac
     2581 agacattttg attattttta gtctaacaat tcctgaaaaa gtgaagattc ctcctaagag
     2641 taattgagtt aaattaaaga ctggaaaaga gagataatta ttcaaatcct tatttcgtag
     2701 atgataagaa ttaaattaaa agattaaccg taagtgagat gtgctatgcg accttatgaa
     2761 aatgcgtagt tcagatatta catactggta tattataccg ttcattaaac ttttcatcgc
     2821 aatctaaaga aaagttcgga aagatcgcga tgcggaataa ttgaatgaga tattcacttt
     2881 tcagctgtta cggtattgta ccgacaactt aataaaaacc tgcttatacg aatatattta
     2941 ttgagtggac cagaagcaaa atttaaaatc aatgttaaag acgg
//
LOCUS       DATAAS010000142         3461 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4992942, whole genome shotgun sequence.
ACCESSION   DATAAS010000142 DATAAS010000000
VERSION     DATAAS010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3461)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3461)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3461
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4992942"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..276
                     /locus_tag="VHF08_02315"
     CDS             <1..276
                     /locus_tag="VHF08_02315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067513.1"
                     /translation="QKVKAPTLFIVGGNDDKRVIDVNNKALTQLVNAQKKKIITVPGA
                     THLFEEPGALEEVARLASGWFRCYFLIKEHTNSNSTNNGSSIQMQQQ"
     gene            916..1998
                     /locus_tag="VHF08_02320"
     CDS             916..1998
                     /locus_tag="VHF08_02320"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX2067514.1"
                     /translation="MSDQVKQNIDQNKIQEFMNKAIGDIASSSSTMLIILGERLGLYK
                     SMAQANGPISAEELANKTGTVERLVREWLANQAASGYIEYDPSSRKYRLPPEHALALA
                     DENSPIYIQGIFKAIKSYFKDEEEFLKMFRGERTFSWMDHNPFMAEGFAEFFKAGYIG
                     NLVNSWIPAVDNGRILEKLQKGAKVADIGCGFGITTLMMAKTYTNSSFTGFDFHKESI
                     QRANELAKRENLDNVKFEVSSASEFPGNDYDFVTFFDCLHDMGDPQGALTHTKNIIKK
                     DDGVCMIVEPFAQNELENNLNPIGRTFYAASTLICVPNSLAFNGPALGAQAGENRIKD
                     LVNKSGFSHFKRVLETPINIIYEAKP"
     gene            complement(2142..2777)
                     /locus_tag="VHF08_02325"
     CDS             complement(2142..2777)
                     /locus_tag="VHF08_02325"
                     /inference="COORDINATES: protein motif:HMM:NF018712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1326 domain-containing protein"
                     /protein_id="HEX2067515.1"
                     /translation="MKGNGTNWRLEGDYFDGCNCKSICPCVFMLDPTEGNCKAVGAWH
                     IEKGHFSDGNNTINLDNLNTAAVIYAPGNMFTGPKMKMALYLDERASNDQKDALTKIF
                     TGQVGGSFFGTLVPHIGEVIGIRSVPIEFIVEGKKRRRIKIPSALELEIEGMTGSDTN
                     KESVLVNPAFAVAPDYDPIIARSTKHTYNDHGLEWDNTGRNSFYSRFTYEA"
BASE COUNT         1242 a          571 c          579 g         1069 t
ORIGIN      
        1 caaaaagtga aagcaccaac tctctttatt gtgggtggta atgatgataa aagagtaatt
       61 gatgttaaca ataaagcatt aacgcaacta gtcaatgctc aaaaaaagaa gattataaca
      121 gtccctggag caacgcatct atttgaagag ccaggagctt tagaagaagt tgcaagactt
      181 gcaagtggat ggtttagatg ttattttctc attaaagaac atactaatag taatagtact
      241 aataatggta gtagcattca aatgcagcag caataactac aataacatta agaagaagta
      301 aaaatataac aaagcattca ttcttcgata taatgattct ccagagcatt aatactacaa
      361 tataaaacct atggctttac tttcttacta ctgcattcac agcaccatca tcaatcaata
      421 aatctgcaaa aggttgtctt agcagtttcg gaagcagact gatatgtgca atatcccttc
      481 catcacatat cataatgata actgttccga aggcctattg cacaacaact ttcaaagatt
      541 aatgtcctta ctattactac cacaataata tgacaccatt aggagaacca tttcatacag
      601 agaaataaaa gataactggg attaatagag gctaacaaga ttatacccat actaactagt
      661 gcatttcttc atgttagtaa aatctttatc ctagccttga aagaaaaatg aatgaattgt
      721 atattttgct tgaggagcta atctaatcaa gagtcaacaa cttactgata agtaattcta
      781 aatatagaca gagaaaaaga tacaagcatt atccttagca aaggttacag atcacgattg
      841 tttatctaaa caatcataag aaattgaagc gtcataattc ttaaatataa ataatattat
      901 gatacttctt ataaaatgag cgatcaagta aaacaaaata ttgatcaaaa taaaatccaa
      961 gaatttatga ataaagcaat aggagacata gcaagtagct ctagtactat gcttataatt
     1021 cttggggaaa gacttggatt gtataaatca atggcgcaag caaatggccc aatttcagct
     1081 gaagaactag caaataaaac tgggacggta gaaaggttgg taagagaatg gttagcaaat
     1141 caggcagcaa gtggatatat agagtatgat cctagcagca gaaaatatag attaccacca
     1201 gaacatgctt tagcattagc tgatgagaac agtcctatat acatacaagg tattttcaaa
     1261 gctataaaat cgtattttaa ggatgaagag gaattcttga agatgtttag aggtgaaaga
     1321 actttttcat ggatggatca taatcctttt atggcagaag gatttgcgga attcttcaaa
     1381 gctggttata ttggcaactt agttaattca tggatcccag cagtggataa tggaagaatc
     1441 cttgaaaaat tacaaaaagg tgccaaagta gcagatattg gttgtgggtt tggtattact
     1501 acattgatga tggcaaaaac gtatacaaat tctagtttta ctgggtttga ttttcacaaa
     1561 gaatcaattc aaagagcaaa tgaacttgca aaaagagaga atctagataa tgtaaaattt
     1621 gaagtgtcat cagcatcaga atttcctggc aatgattatg attttgtaac gtttttcgac
     1681 tgtctacatg atatgggaga tcctcaagga gcattaactc atacaaaaaa tattatcaaa
     1741 aaagatgatg gtgtttgtat gattgtagaa ccttttgcac aaaatgaatt agaaaataac
     1801 ttaaatccaa taggtagaac attttatgct gcctctacgc ttatatgcgt tccaaactcc
     1861 ttagctttta acggacctgc actaggtgcg caagcaggag aaaacagaat aaaagatcta
     1921 gtgaacaaga gcggtttttc acactttaaa agagtcctgg agacaccaat aaatataatc
     1981 tatgaagcta aaccataatt agaaatagag atggagatag atagagagaa taagagagaa
     2041 aagtgtaatg tgaaaataaa taaccaataa caaactgaac tttttgaaaa atttagtttt
     2101 gttatcttct tagcttatta ttattgctat ccgcttgcat attaagcttc ataagtaaat
     2161 ctagaataaa acgaatttct tccggtattg tcccattcta gtccatgatc attgtatgtg
     2221 tgtttagtag agcgtgcaat aataggatca tagtcaggcg caactgcaaa tgctggatta
     2281 accaataccg attctttatt tgtatcacta cctgtcattc cctctatttc aagctcaaga
     2341 gcagatggta tctttattct acgtcttttt ttaccctcaa caataaattc tattggaact
     2401 gatcttattc caattacttc tccaatgtgg gggactaatg taccaaagaa gctaccacca
     2461 acctgacctg taaatatctt tgttaatgca tctttttgat cgttgcttgc tctctcatct
     2521 agataaagag ccatcttcat ctttggtcct gtaaacatat tgccaggagc ataaatgaca
     2581 gcagctgtat taagattatc aaggtttatt gtattattac catcactaaa atgacctttc
     2641 tctatatgcc aagctcctac tgctttgcag tttccttcag ttggatctaa cataaaaaca
     2701 catggacaaa tactcttgca attacatcca tcaaaataat ctccttcaag tctccaattt
     2761 gtaccattac ctttcataat aagtgactat gttaccagtg ctctgagaga gatatatatg
     2821 tgtggtacta tgttactgta aaaatatttt gattgatcgt agtttgccaa tcacaatatt
     2881 cgatcagaaa aaaagataaa gccaatgtcg ttattgtagt agtaaataac gacattcaca
     2941 gactcacaaa agctagttca attattataa tatcaaattc aggacaaact aaactctttg
     3001 aaacactata gcaaactaat ctggaattca taacgacata aacagttaga cagtggtgat
     3061 gatactacta tgttatgtcc ctaccgaata ataaggcgca ataataaaga aacagcatac
     3121 acacaaaaca aaaagaaatc tttcttattt ctttttaaat agctagcagt gaaatttctt
     3181 gtatacaaat gtcatttgtg cattttaaca cccaaaactg ttagccattg agttgggtat
     3241 gatggtatat gataatcatt cgctttcctt tattcctttt atttttcttg ttgctatatc
     3301 attcataatg tctctatttg aattctgtag ataaactatg actatcttct acttttaagt
     3361 atcacctcct ctatgtaggt cattttggta gggatatgga tattccattt gatgtgcagt
     3421 ggcctgtccg atcttggttc caaaaaagtg gctgacaatg c
//
LOCUS       DATAAS010000143         2358 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2830876, whole genome shotgun sequence.
ACCESSION   DATAAS010000143 DATAAS010000000
VERSION     DATAAS010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2358)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2358)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2358
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2830876"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..595
                     /locus_tag="VHF08_02330"
     CDS             <1..595
                     /locus_tag="VHF08_02330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067516.1"
                     /translation="RAEKIGLKVIAVTEHVRRTSDWVPRYIDEMTAESAAVSSSKLKV
                     ITGFEAKILRDGSIDCCEEYSKDYFIVASFHTIFGDKEIWIEALKSAIQNPDVDVIGH
                     LAPEPTFDLDDQELSELASLIFSNHKIIELNAKYHRPPQRWLLKFKEHAVRFHLGSDA
                     HSLEEVGNFSRISDLIAMVKDDSRDSIDRANTYQRSS"
     gene            962..1912
                     /locus_tag="VHF08_02335"
     CDS             962..1912
                     /locus_tag="VHF08_02335"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEX2067517.1"
                     /translation="MSSFSFLFTSGFIPIASAQKAVILNFDDDWKGQITYAVPILEKY
                     GFNASFYVTTGCLTYQNSSFCNNAGGESAMSWDDIIALSESGYDIQCHGVSHKDLTTL
                     SAAQLEYEVGQCKQSLLEHGINSTIFGPPYAGGRGNSTIVDTVSKYYDMARVGYGVLV
                     HLNCDWAYDENVAIYKTNQTDCRTYYDNGTLTFANRYSLPVITDYQAQAMYRDNNTKI
                     FDIFVETVNEQTQFNTNGTINAIPVIVYHNIDYKNGSWVNNSPEWIVHSTTDVNLFDM
                     EMKYLHDNGFKVLAISDLGYNQTSNKLYIKNNIDDSFPRR"
BASE COUNT          787 a          379 c          468 g          724 t
ORIGIN      
        1 acgcgctgaa aaaattggac taaaagtgat tgccgttaca gagcatgtaa gaagaacatc
       61 tgattgggtg ccaagataca tagatgaaat gacagcagag agtgcagcag tgagcagcag
      121 taaattaaag gtgattactg gttttgaagc aaagatccta agggatggat ctattgattg
      181 ttgtgaagaa tatagcaaag attacttcat agtggctagc ttccatacaa tatttgggga
      241 taaggaaatt tggatagagg ctctaaagag tgcaatacag aatcctgatg tggatgtaat
      301 tggccatcta gcacctgagc ctacttttga tcttgacgat caagagcttt ctgaattagc
      361 ctcattgata ttctcaaatc acaaaataat tgagcttaat gcaaaatatc ataggcctcc
      421 gcagaggtgg cttttaaaat ttaaggaaca tgcagtaaga tttcatttag gaagcgatgc
      481 gcattcacta gaggaagtag ggaatttttc caggatttct gatttgattg ccatggttaa
      541 agatgattca agagatagca ttgatagagc taacacttat cagaggagta gctgactaca
      601 tgattatatt tcaaaccgtg tcgttttata cattcaacta ttgttgctcg aggggacgat
      661 tgcttcagtc acattgtttt cctctaagct gtctgttatt ataacgaaga gcacccgtag
      721 gctttttaaa ctgcgatatc gttccaattt cttggttcct aataattttt gaactttttt
      781 attaccggtt ttggcgtaac ttattgagaa taatggttga taagaatagg ttatgtatga
      841 gcagcgtaag atcaggggta aaaaaatgac atataataaa gatcgtttga gtaattttct
      901 tatctttatt aatttaaaaa actctcaaat gattaatcga gagactagaa aaatcttctt
      961 aatgtcatcg ttttcgttct tatttaccag tggcttcatc ccaattgcat ccgctcaaaa
     1021 ggcggtaatt ttgaatttcg acgatgattg gaagggacag atcacttacg cagtgcccat
     1081 tttggagaaa tatggattca atgcaagctt ctatgtaaca acgggatgtc tcacttacca
     1141 aaattcgtca ttttgtaata acgcgggagg agaatcagct atgagttggg acgatattat
     1201 agcattatct gaatcgggtt atgatatcca atgtcatggt gtaagccata aagatcttac
     1261 gacactatct gctgcgcaat tagagtatga agtcggacag tgtaagcaat cattacttga
     1321 acatggcatt aattccacaa tcttcggccc gccttatgct ggtggtcgag gcaactcaac
     1381 aatagtcgat acggtatcca aatattacga tatggctaga gtaggatatg gagtgctagt
     1441 gcatcttaat tgcgactggg cttatgatga gaatgtagca atctataaaa caaatcaaac
     1501 ggattgcaga acatattatg ataatggtac tctgactttt gcaaatagat attctcttcc
     1561 tgtaataaca gattaccagg cacaggcaat gtatagagac aataatacaa agatatttga
     1621 tatttttgtc gagactgtta acgagcaaac acaattcaac actaatggaa cgataaatgc
     1681 aattccagtt atagtatacc acaatataga ttataagaac ggtagttggg ttaacaacag
     1741 cccagagtgg attgttcatt ctacaacaga tgtcaattta tttgatatgg aaatgaaata
     1801 cctccatgat aatggcttca aagtacttgc aatatctgat ttaggatata atcaaacaag
     1861 caataaatta tacataaaaa ataatattga cgatagtttt ccgagaagat aattatcata
     1921 tagaccttgt agggttttct tttacataat caaaagatgt gtctctccag accaaattgt
     1981 ttctgtttta tcctcatgcc atattctata tttaactaca ggtgatcgca tatagactaa
     2041 aaaactgcta ttcatgatta aaatcaggct tcgggctttc aatatttgcc gtgaaatgcg
     2101 aggaccattc tccagtaaag atgaggagaa ttgataattg gtagataaca aagggagata
     2161 atagacgtat aatagacttt gggaaccgtc cttttagcaa gctatatctt tccagataaa
     2221 tgatactaac accgcaacaa tttagtttga aaagagcatt caaccaatat agacaggatc
     2281 tttttaacct ctgtcataag ttttagttcc attacaatca agttctccaa ttgaatagga
     2341 gagaaaaatt tatgggtg
//
LOCUS       DATAAS010000144         1986 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4993347, whole genome shotgun sequence.
ACCESSION   DATAAS010000144 DATAAS010000000
VERSION     DATAAS010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1986
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4993347"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(157..999)
                     /locus_tag="VHF08_02340"
     CDS             complement(157..999)
                     /locus_tag="VHF08_02340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067518.1"
                     /translation="MDKWLRPQRKTILLITIIIVIIVSGIIIIIVLTPLLRPPIPQLL
                     VDRNGVTKIYETKGEEHYGFEYKYDSRLERDEFYLEDVAVVDGEYTAYIKLDTKEDDD
                     DEVSFKLRGGKHNDEHRLAGRCYAIGVEFDGEPHLAKEYPEHPKTPKFQNEIKISDYE
                     YRSIGDLNGRWVGLKVIIYNNKDNSVQIEVYVDNKGLLANGNPANDWKLWWTATDDGD
                     WRNNDGKKGGKPYLELQGEKGGTSEMVYIRIDQIEEEGQTEIKYESVREIDSSNRLEK
                     IVNN"
     gene            1523..1837
                     /locus_tag="VHF08_02345"
     CDS             1523..1837
                     /locus_tag="VHF08_02345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067519.1"
                     /translation="MSCFNTIHFGINAPRTGKSMVYNKCIFCNKVYATNAKGSVCDKC
                     TIILTWQSGMDCLAAVNRVSELVRTNKLDPKLKNENYCKTNFGVHATQVIMDAIDSLK
                     VQ"
BASE COUNT          640 a          347 c          291 g          708 t
ORIGIN      
        1 aaaaaagaga attcaactca aaaaggatga ttgatatata tatgtatata tatacatata
       61 tatatcaatc atcctttttg agttgaattc tcttttttat cttttgtaaa agcataagaa
      121 taagattctc ttgtagcgga agcataagaa atacttctaa ttattcacaa ttttttccaa
      181 tctattggaa ctatctatct ctcttactga ttcgtattta atttctgtct gtccttcttc
      241 ttctatttgg tcaattctta tatagaccat ttcagatgtg cctccttttt caccttgtag
      301 ctctaaatat ggcttgcctc cttttttacc atcattattt ctccaatctc cgtcgtctgt
      361 agctgtccac cataatttcc aatcatttgc aggattacca ttagctaata atcctttgtt
      421 atcaacatac acttcaatct gaacactatt atctttgtta ttgtagataa tgacttttag
      481 accgacccat ctgccattaa gatcaccaat acttctatat tcataatctg atatttttat
      541 ttcattttga aatttaggcg tttttgggtg ttccggatat tcttttgcta aatgcggttc
      601 tccatcgaat tctactccta tggcataaca cctaccagca agcctatgtt catcattgtg
      661 ctttccacca cgcaatttga aacttacttc atcgtcgtcg tcctcttttg tgtctaattt
      721 gatgtaggct gtatattcac catctactac tgctacatcc tctaaataga attcatctct
      781 ttctaaacga ctatcatatt tatattcaaa accatagtgt tcttctcctt ttgtttcata
      841 gatctttgtt actccgttac gatcaactaa tagttgagga ataggaggcc gcaataaagg
      901 agtaagaaca ataatgatta ttatccccga cactataatt acgataatta ttgttattaa
      961 caaaattgtt tttctttgtg gcctaagcca tttatccata tgatagctat atatcaaaat
     1021 acaattataa acaaaacgga gcacgggtaa taaagtctag atgaattgtt ctaagctata
     1081 aaatttcttt tttatccttt aggcaatata tataaccaat ctctatataa gttatcgatt
     1141 attatttttt tatgttaaca cttataatga ttaatagcta gcgatgaacg tggtacaaga
     1201 cctacacgtt tgcaacaatt gtggagtagt ttttgacctt caacgccgaa gagataaaga
     1261 ttgtccctta tgtcatagtg gggaacatat cccaatacga caagccaatt ggtaagacgg
     1321 tattacatta tttattatca tattggcaag cagttaatat agggcataat cctataaagg
     1381 atgatagatg aacaaatcag ctcacactta ttatctgatt ctgtatcttt ccacacggtg
     1441 atcgcaacct atgacacttt gtgaaagatg taccaaacat gaagaatatc acacatgttc
     1501 aacgtgtaat cagcatttgt gtatgagctg ttttaatacc attcattttg gtataaacgc
     1561 tccaagaact ggtaaatcaa tggtatacaa caaatgcatt ttttgtaata aagtatatgc
     1621 aactaatgca aaaggtagtg tttgtgacaa atgcacaatt atacttactt ggcaatcggg
     1681 aatggattgt cttgctgcag taaacagggt ttcagaacta gtgagaacga ataaactaga
     1741 cccaaaattg aaaaatgaaa actattgcaa gacaaatttt ggtgtacatg ctacgcaagt
     1801 aattatggat gcgatagaca gtttaaaagt acagtaataa taatattaat aataataagt
     1861 tgttttgaat taaataactg attaccttta ggctttattg tatattaaat tctttcttaa
     1921 agacaatgat cgatgatgct gacggcaaat ttacagatcc agattttgat ggtaaaaagt
     1981 ataact
//
LOCUS       DATAAS010000145         2025 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4993596, whole genome shotgun sequence.
ACCESSION   DATAAS010000145 DATAAS010000000
VERSION     DATAAS010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2025)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2025)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2025
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4993596"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(753..926)
                     /locus_tag="VHF08_02350"
     CDS             complement(753..926)
                     /locus_tag="VHF08_02350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067520.1"
                     /translation="MTIQNAIKHAEAIGPVILAFTEHIRKSSYWIPKYVKEIEFYNNS
                     IYHICSTKDYSWP"
     gene            1115..>2025
                     /locus_tag="VHF08_02355"
     CDS             1115..>2025
                     /locus_tag="VHF08_02355"
                     /inference="COORDINATES: protein motif:HMM:NF014686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEX2067521.1"
                     /translation="MVSTILVPGAAGPAGINTIKSLRMANFYGKIVATDSSSLSAGFF
                     LADTKEITPEAAELSFTERLLNIVKMHKVDVLMPSSGYDIYRYSENREKLAEIGAQAV
                     VTDRNNLETCRDKFLTYKNLSNKFELPFTTTNPQHVPAFPIIAKPQFEKGTGNIIKID
                     DESDLNYVNSKFDNMIFQEFLPGTEYTVDVLSDLNKKPLIAVPRIRLQTKGGVSTIGK
                     IVRNPDMEINCMKMAEYVGIRGPCCIQMKESSDGVLKLVEINARMGGGTIFTTLAGAN
                     FPAMILDMIDGKEISMPKIAEIIIIRY"
BASE COUNT          685 a          314 c          362 g          664 t
ORIGIN      
        1 gagtatcttc atcatcggta acataagtaa catctcgtgt attcttagat agtttatgta
       61 aaattattcg gtcgtgaaga ttaaaagcga aatatgatat acaagctgca cataagatat
      121 tgaagagaga agtaggtata acctatatca tattgaaaaa atacattata atgttataca
      181 atttaaaaat gctttggaat tagatgagtc ggagcccttg gccggacgtt tcaaatcggt
      241 aagtgcaaga cattatgtat taaacgatcc agaaaaactc tcaggcgaat atatatcagc
      301 ctagcaaaat tttggagtaa atagctttaa tattagataa aaattgatta tcaaaccaaa
      361 tcaactacct tttttctggg tgctaaatct aattagtatg gaataggagc tggaaccgta
      421 atcgttatca taaaagaaag tagagcagac attcggactt cttaacatcc attttctctt
      481 tgtttctatc tctcctacaa agaagttgga tgctatgtct tgatgtcatg ttatttcata
      541 tctttctctc ggttgattat taatcgaata gacttgctca taattgtgct ttatgtcaca
      601 ttttttcgtc tattatggcc attctactta cgaagaatga ttgtctctct tctgactact
      661 tgacattatg gaattctaga ttagatgagc aaaaatgtct tttactatat tctttgggat
      721 aattaattga tccgtcttgt ataatcttgg cttcaaggcc aggaataatc cttagtggaa
      781 cagatgtgat atatactgtt attgtaaaat tctatttctt ttacatattt aggaatccaa
      841 tatgaagatt ttctaatgtg ttcagtaaaa gccaaaatca ctggccctat cgcttctgca
      901 tgctttatag cattctgaat tgtcatatct ggtccagaat gatcgttgta attgcaatgc
      961 acatatagtc ttctttgatg ttcaagcaac tatgctatag atctaattag tattataaaa
     1021 attgtatttg cgaaatagaa ggaatcactg cataatatgt tatgtattat atttgcataa
     1081 tcatataaga atttaatgtt cctttacata tatcgtggta tctacaattc ttgttccagg
     1141 tgctgccggt ccggcaggga tcaatacaat aaaatcattg agaatggcaa acttttatgg
     1201 taaaattgtt gctacagatt caagctcttt atctgctggt ttctttttgg cagataccaa
     1261 agaaattact cctgaagcag ctgaactgtc ctttacggag aggcttctca atattgtaaa
     1321 gatgcataaa gttgatgttt taatgccatc gtcaggatat gatatttacc gatatagtga
     1381 aaatcgtgaa aagctagcag agattggcgc tcaggctgtt gtaactgata gaaataactt
     1441 agaaacttgt cgagataaat ttctaacgta taaaaacctg agtaataaat ttgaacttcc
     1501 atttacaact accaatccac agcatgtccc agcatttcca attattgcaa aaccgcagtt
     1561 tgagaaagga actggcaata ttatcaaaat tgacgatgaa tcagatctta actatgtaaa
     1621 ctctaaattt gataatatga tattccagga atttctccca ggaactgaat atacagttga
     1681 tgttctttca gatttaaaca agaaaccatt aattgcagta cctaggatcc gactccaaac
     1741 aaaaggaggt gtttctacga taggaaaaat agtacgaaat cctgatatgg aaataaattg
     1801 tatgaaaatg gcagaatatg taggaataag aggaccatgc tgcattcaga tgaaagaatc
     1861 atcagatggt gtacttaaac tggtagaaat caatgcaaga atgggaggtg ggacaatatt
     1921 tacgactttg gctggagcta actttccagc gatgatactt gatatgatag atggaaaaga
     1981 aatttccatg ccaaagattg cagagattat cataattaga tatta
//
LOCUS       DATAAS010000146         3678 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4994716, whole genome shotgun sequence.
ACCESSION   DATAAS010000146 DATAAS010000000
VERSION     DATAAS010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3678)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3678)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3678
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4994716"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(432..710)
                     /locus_tag="VHF08_02360"
     CDS             complement(432..710)
                     /locus_tag="VHF08_02360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX2067522.1"
                     /translation="MKYRSRTDIVGLILEAANGGGATKTKIMYNALISYNLMKEYLTL
                     LAENNLLEYEKGNMTYRTTEKGLQLLRIYNNMNEIAPLSVTRSAGHKN"
     gene            complement(986..2803)
                     /locus_tag="VHF08_02365"
     CDS             complement(986..2803)
                     /locus_tag="VHF08_02365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEX2067523.1"
                     /translation="MSEYENLRTADIVVEALIDWNVNVIFGLPGDGINGFIEALRRRQ
                     DKIKFILVRHEESAAFMACAYAKYTGKLGVCVATSGPGAIHLLNGLYDAKADNTPVIA
                     ITGSTYTDLMNSNYQQDVNLLQLFSDVAVYNTIINNPEQAEMAVDIACRSAMAQRGAS
                     HLTIPIDVQEMKLKGRYSRHKVGGHTSDVNVPLITSDTKSIEKAAKILNSGEKVVILV
                     GQGALDAGDEVISVAEKLGAPVVKALLGKAVISDTHPVSIGGLGLLGTEPASDAMSEA
                     DTLLMVGTSFPYIDYLPKPGQAKGIQIDIKPDKIGLRYPVEVGLVGDSRLILTALLPM
                     LQQKQNLDFLKSKQQAMKNWISLLNEQSTRTDKPIKPQVIAAAVSGELEDDAIISVDS
                     GTITSWAARYINIRKGMKFSLSGTLASMACGLPYAIAGQIAFPERQCVAFVGDGGFTM
                     LMGEFATAVQYNLPIKVVIIKNNTLGMIRWEQMAFLGNPEFGVEFTPIDYARFAEACG
                     GKGYSIREPGEVSSVMHEAMAERKKPTIIEAYVDPFDPPMPPKVEIEFVRKLAESFAK
                     GQPYARRIGLTLYRNQVHERLRDFHHHDQIDHHDHHQQK"
     gene            complement(2949..3227)
                     /locus_tag="VHF08_02370"
     CDS             complement(2949..3227)
                     /locus_tag="VHF08_02370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067524.1"
                     /translation="MSEYPYEDKIHSDDRVNYKTVYSSDGIKIGEVEAAFADSFIVKL
                     EKEKNMEIKYEIPKLEISSLIDDRITLKLKQREIDEKYQTSSIKKSLK"
     gene            3356..3505
                     /locus_tag="VHF08_02375"
     CDS             3356..3505
                     /locus_tag="VHF08_02375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067525.1"
                     /translation="MRSNTSSPLPYAAVTATTTDNILSLEGKPYLNYINSIKSPASQR
                     HISFL"
BASE COUNT         1120 a          721 c          544 g         1293 t
ORIGIN      
        1 agaataattt ttctatttgt aatgtgacca aggtttctat atataattat caatctatat
       61 atcagaaatc catatgcaga caataagaat aaatctgcta aagaaggtac gggcgataca
      121 atatcaagca ctacctcata atatgcccat attatatttg ctataaacca gaaaacaagg
      181 cctaatgtta gaaaagtatt agtcttatct tctcattcct tactatcttt gtccttaaag
      241 tgaatcattg cagaaagccc tgcagcaata agagaattta ttatcaatat ccaatttgaa
      301 tagattaatt tgctgtctga atcagcgaaa ataataaaag aatttcctat gactatagta
      361 ataattactc ctaaaaaaat tatagaggct tcaattattc tcttaagatg cagctttttc
      421 aggaatcatc ttcaattttt gtgacctgcg gatcttgtaa ctgataatgg agctatttca
      481 ttcatgttat tgtatattcg aagtaactgc aatcccttct ctgttgttct gtatgtcata
      541 tttccttttt catattctaa cagattattt tcagctaaaa gtgtcaagta ttctttcata
      601 aggttatagg aaatcaaggc gttgtacata atttttgttt tagtagcgcc tccaccattt
      661 gcagcctcta gaattaatcc aactatatca gttctacttc tatatttcat taaatgttca
      721 agtccttaaa caataatacc gctctactat tattgatatt attgcaggta taaatcttct
      781 tgttctttat ctactatgac aagaagttag ctttatgtaa ttttttatga cctaacagat
      841 aatattattt ctttatcaag gttagtgaat ttttggattt tttgtttagg acatatataa
      901 gttccaattc atgttatagg agtgtactaa cattgaagag gttgaaataa atgataatga
      961 caataagctt ccaatacgcg tcagctcact tttgctgatg atgatcatga tggtctattt
     1021 gatcatggtg atgaaaatct ctcaatctct catgaacctg gttcctatac aaagtcaaac
     1081 caattcttct agcatatggc tgtcccttcg caaacgattc agctaatttc ctaacaaatt
     1141 ctatctctac ttttggtggc ataggtggat caaatggatc tacgtatgct tcaattattg
     1201 ttggtttttt tctctcagcc atggcttcat gcataactga acttacctct ccaggttctc
     1261 taatagaata acctttgcca ccacaagctt cagcaaatct tgcataatca attggcgtaa
     1321 attctacacc aaattcaggg tttccaagga aagccatttg ttcccatcga atcatcccca
     1381 gtgtattgtt ttttattatg acgaccttaa ttggcaaatt atattgaact gctgttgcaa
     1441 attcgcccat aagcattgta aatccgccat ctccaacaaa tgccacgcat tgtctttctg
     1501 gaaaagcaat ctgtcctgct attgcataag gtaaaccaca tgccatactt gcaagggtac
     1561 cagatagtga gaatttcata cccttcctaa tattgatata acgagctgcc cagctagtaa
     1621 ttgttccgct gtccacagat attatggcat catcttctag ttctccagag acggcagcag
     1681 caataacctg tggcttaatt ggtttgtcag ttctggtact ttgctcgttt aataggctaa
     1741 tccaattttt cattgcttgc tgttttgatt ttaaaaagtc aaggttctgc ttctgttgta
     1801 acattggaag tagagcagtt aatataagcc tagaatcacc tactaatcca acttctacag
     1861 gatatcgtaa accaatctta tctggcttta tgtctatttg aattcctttt gcctgacctg
     1921 gttttggcag ataatctatg taagggaatg atgttccaac cataagtaac gtatcagctt
     1981 cgctcatagc atcactagcc ggctcggttc ccaaaagtcc taatccgcca atactaactg
     2041 gatgagtatc tgaaattact gctttaccca ataaagcttt aactacaggt gctcctaact
     2101 tctctgcaac agatattact tcatctccag catccagtgc tccctgtcct actaatatta
     2161 ctactttttc tcctgagttc aaaatttttg cagctttctc tatcgatttt gtatctgacg
     2221 taattaaagg aacattaaca tcagatgtat gcccaccaac tttgtgtcta gaatatcttc
     2281 ctttcaattt catttcttga acatctattg gaattgttaa atggcttgca cctctctgtg
     2341 ccattgcact tctacatgca atatctacag ccatctcggc ctgttcagga ttgtttataa
     2401 tagtgttgta aactgcaaca tctgaaaata gctgtaataa atttacatct tgctggtaat
     2461 ttgaattcat caaatctgtg tatgtacttc ctgttattgc aataacagga gtattatctg
     2521 ctttggcatc atataatcca tttaagagat gtattgcacc aggacctgat gtcgcaacgc
     2581 agacacccag ttttcctgta tatttggcat aagcacaagc catgaatgct gcagactctt
     2641 catgtctaac aagtatgaat ttgattttgt cttgtcgcct ccttaatgct tcaataaaac
     2701 cattaatacc atcaccgggt aatccaaaaa taacgtttac attccaatca attaatgcct
     2761 caaccacaat atctgcagtc cttaaatttt catattcgct catataatgt aacatagatt
     2821 atgtatgtat gatataagtg cattaaactg tgctagcctg tactttgcga tctaatgatt
     2881 gtatgaacta tgtcatatac atattttatt tgcatctgct gaagaggtta caatatcttt
     2941 gcatccagtt atttcaagct tttcttgatt gatgatgttt gatatttttc atctatctct
     3001 ctttgtttta atttaagagt aattctgtca tctataagac ttgatatttc tagtttagga
     3061 atttcatatt ttatctccat atttttttct ttttctaact tcacaataaa agagtctgcg
     3121 aatgccgctt cgacttcacc tatttttatt ccgtcagatg aatatacagt cttatagttc
     3181 accctatcgt cgctatgaat tttatcctca tagggatatt ctgacatatt gaatttataa
     3241 tatactttat ctcaaataag tattaaaaac cagctattta cttgatacca gtattaataa
     3301 tctggtattt tgatctaatg acagagagag agagagagag agagagcatt tacatatgag
     3361 gagtaatact tcgtcaccgt tgccatatgc cgctgttact gctactacta cagataatat
     3421 attatcacta gaaggcaaac cttaccttaa ctatattaat tcaatcaaaa gtcccgcatc
     3481 acaaagacat atatcttttc tctaaaaaga aacatgctat ttcacaacta taaaaccata
     3541 gatgagcttt tggcagataa aaacactcct acaataatag aagagaaaat catagacttt
     3601 attgtctcat taagaacaga ctcacatttt gcagtctcat atagaacacg ggctacatac
     3661 cttacagcca tcctaacc
//
LOCUS       DATAAS010000147         4050 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4995070, whole genome shotgun sequence.
ACCESSION   DATAAS010000147 DATAAS010000000
VERSION     DATAAS010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4050)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4050)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4050
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4995070"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            61..627
                     /locus_tag="VHF08_02380"
     CDS             61..627
                     /locus_tag="VHF08_02380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067526.1"
                     /translation="MNNIIQEIATSDNIDYSMAVKKFFQDIEEKNALTKTVDELRQEK
                     KRMDILIDSQFNNARIFIESFGQEAKKDIADIFNTSTQNLQAIQLQTLQTVKEADTII
                     KSLNNEVKTQFEEIQKLGSSQEFSALIRAAKGDNSVNIEELKYAGIKTIDIIMSRLSD
                     DYNNNNSSNKEIKESLERARTSLQSKSS"
     gene            complement(1085..1321)
                     /locus_tag="VHF08_02385"
     CDS             complement(1085..1321)
                     /locus_tag="VHF08_02385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067527.1"
                     /translation="MSKNTVHSISSKEEQEIYQLNKKQTNIRTLLTLQNIQYLVEGLE
                     ALLYTNLDGYERARVIQLRDELSSYINSIFIDYS"
     gene            1643..3373
                     /locus_tag="VHF08_02390"
     CDS             1643..3373
                     /locus_tag="VHF08_02390"
                     /EC_number="6.5.1.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA ligase"
                     /protein_id="HEX2067528.1"
                     /translation="MSSHNEFSYFVEICENIRSTPSKNLKVSILSEYLSRLDNDSLPI
                     AILFLSGRIFPRGSRQNINVGFSIIMQSLSEIAMLDASEIQQVYLTHGDMGALSEYAV
                     SKKHIFSLFRQQQLTLCFVYNQLKKIAGIVGSGASKNKTKILTGLLIDMSPQEAKYLI
                     KIINGEMRIGLVEGLIEIAIAKAFNQNIKVIREAMLVVGDIAQVSILAKRNLLDKAII
                     KPLTPLSFMLADVMFTAEEIINYYEKPLICEYKYDGIRVQMHKFGQEIRMFSRKLADV
                     TNAFPELADAALSATATATSSASSSPSSNIDFILDGEILAFRNNKPLHFQELQKRLRK
                     KTVTEQIIAEVPVIYTVYDIMYFNGEAIIKKPLNERKEILSCIAFKQPIINSSYKIVN
                     SEQEIISMFGISKDTGHEGLVLKEPNSQYHPGRRGRYWVKLKKELDTIDAVILIAEYG
                     HGKRAGTLSDYTFAVRDEKNNNKLRVIGKAYSGLTDEEIDDMTNRLKSLMVKDEAYKI
                     IVKPEIVLEIAFDSIQKSDRHDSSFALRFPRIKNIRNDKTVADIDTLEKVEQIYKKQV
                     YLIDNKKDVP"
     gene            3766..>4050
                     /locus_tag="VHF08_02395"
     CDS             3766..>4050
                     /locus_tag="VHF08_02395"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067529.1"
                     /translation="MTNSVFAQAQQDNTIGVKIISPITGQQVPVGELTISGISTDNAT
                     TDCTVYADWNNLKPFQKAIATGPGGGSDYSKWNFTYTPQYHIITNGTNELT"
BASE COUNT         1496 a          603 c          678 g         1273 t
ORIGIN      
        1 gtcttggaaa aatttcttaa cagccataga ataatctatg ttatctgatg ttgcaatttc
       61 ttgaataata ttattcaaga aattgcaaca tcagataaca tagattattc tatggctgtt
      121 aagaaatttt tccaagacat agaggaaaaa aatgctttaa ccaagacagt agatgaatta
      181 agacaagaga aaaaaagaat ggatatcttg atagattctc aatttaacaa tgcacggata
      241 tttattgaat catttggaca agaagcaaaa aaagatattg cagatatatt caatacctca
      301 acacagaatt tacaagccat ccagctacaa actcttcaaa cagttaaaga agctgatacc
      361 ataattaaat cactcaacaa cgaggttaaa acacaatttg aagaaattca aaaattaggg
      421 agtagtcaag aattctctgc attgataaga gcagcaaagg gtgataatag tgttaacatt
      481 gaagaactaa aatatgctgg aattaagaca attgacataa ttatgtctag actgagtgac
      541 gactacaaca acaacaacag cagtaataaa gaaataaagg aatctctgga gcgtgctcgc
      601 acaagcttgc aaagtaaatc cagctaatta taataacagt tagcaaaaat aacatcttaa
      661 cgcattcatc atttcttgct ttcgcattct aagaagtatc tatctgttga aatgcaaaat
      721 gtaacacgat acgacacatt aagttaacgg cgatatgaat atcaataaat gaaagagatg
      781 attataataa gccagtaaga tttgtaaata taatatattt ctttccaaaa cttggaatga
      841 ttatatattg aattgcacct aactccaatt aattcatgtc gattgtttga attatattag
      901 atggcataag ataataacat aaaaaaagat atctaagact acaattaatt ttcctttatg
      961 ctggtatgct aatgcaaacg caattgaatt tataattaat atctagagaa tagaaggtac
     1021 atgttaacta ctaatactta tggactaaac aggttttaat aggtcttata aatcaaacat
     1081 tctttcaaga atagtcaatg aatatactat tgatataaga agataattcg tcccttaact
     1141 gaataaccct tgctcgttca tatccatcaa gattagtata gagtaaagcc tctaatcctt
     1201 ccacaagata ttggatattt tgcaatgtta gaagggtcct aatattagtc tgttttttat
     1261 ttaattgata gatttcttgt tcttctttac tgcttattga gtgaacagta tttttagaca
     1321 agatgttatt atataatgta ttctatttat tatgaagttg tctattattt tattttcttg
     1381 tcctctataa aaaatcaact atcaatatct ctcttccaat tgacatctga aggttctgcc
     1441 tgaatataga cacttaactt tcataatatt atggcatagt gtaaagatga gtcagtctat
     1501 agttggacca gtctttccat agtcgcggca ttatatatta atttggtaat ctaaatttag
     1561 ataaaactat tagattaaga attatctctc tctttttata atggcaatga tatcctaatg
     1621 gagattaggt tcgagtcttt taatgagtag ccataatgaa ttctcatact ttgtagaaat
     1681 atgtgaaaat attcgttcaa cgcctagtaa gaatctcaaa gtaagcattc tttctgaata
     1741 tctttctcgc ttggataatg attcattacc tattgccatt ctgttcttat caggtagaat
     1801 ctttccacgt ggctccagac agaatataaa tgtaggtttt agcataatca tgcaatcact
     1861 ttctgaaatt gcaatgctag atgcaagcga gattcagcaa gtttacctca cacatggcga
     1921 tatgggtgca ttatcagaat atgcagtatc aaaaaagcat atattttcgc tttttcggca
     1981 acagcaacta acattgtgtt ttgtatataa tcaacttaaa aaaattgcag gtattgtagg
     2041 ctcaggggcg agtaaaaaca aaacaaagat tttgactgga ctacttatcg atatgtcgcc
     2101 acaggaagca aaatatctaa ttaaaatcat taatggcgag atgaggattg gtttggttga
     2161 aggactgatc gaaattgcga ttgcaaaagc attcaatcag aatatcaaag ttataagaga
     2221 agctatgctg gttgttggag atattgctca ggtatctata ttggcaaaga gaaatttatt
     2281 ggataaagcg ataataaaac ctcttactcc tctaagtttt atgttagctg atgtaatgtt
     2341 cactgccgaa gagataatca attattatga aaaacctttg atttgcgagt ataaatatga
     2401 tggaataaga gtacagatgc acaagtttgg acaagaaatt agaatgttct ctcgcaagct
     2461 tgcagatgtt acaaatgcat ttcctgaatt agctgacgct gcattgtctg ctactgctac
     2521 tgctacttca tctgcttcat cgtcaccatc atcaaatata gattttattt tagatggaga
     2581 aatacttgct ttccgaaata acaaaccatt gcactttcaa gaactccaga aaagacttcg
     2641 caaaaagact gtcacagagc aaatcatagc agaagtccca gtgatatata ctgtctatga
     2701 tatcatgtat tttaatggag aggctataat caagaaaccc cttaatgaac gaaaagaaat
     2761 tttatcatgc atagcattca aacaaccaat aattaattca agttataaga ttgtaaattc
     2821 agaacaggaa attatttcaa tgtttggtat cagcaaagat actggtcatg aagggctagt
     2881 attgaaagag ccgaattcgc aataccatcc tggcagaaga ggcagatatt gggtgaagct
     2941 gaaaaaagaa cttgatacaa ttgatgcagt tatattaatt gctgaatatg gtcatggaaa
     3001 aagagcaggt acactatcag attatacatt tgctgtaaga gacgaaaaga acaataataa
     3061 attaagagtt attggaaaag catactctgg tttaactgat gaagaaatag atgatatgac
     3121 aaataggtta aagtcactta tggtaaagga tgaggcatat aagataatag taaaaccaga
     3181 aatagtttta gaaattgctt ttgatagtat tcaaaagagt gacaggcacg acagtagctt
     3241 tgcattgcgt tttcctagaa taaaaaacat acgtaatgat aagacagtag cagatataga
     3301 tacgcttgaa aaagtagaac aaatctataa aaagcaagtt tatctgatag ataataaaaa
     3361 agatgttcct taattaaatg tattaaaaac atattcttga ataataacta gaaaaagaag
     3421 agatgtctat cactagcaat gataaagact ctctctaaat ctatttttaa cttctctgat
     3481 gatatttctc ctcgagttca tcctctaaca gatctatctt aatgtgtgga atttgttata
     3541 tttggcaagt agtcaaactc catttaacaa ggacgagttt ctaatagtgg gatgcattta
     3601 tctataatgg tggaaggatt tcaataattc attcgttaat gctctaagta ttttgacaat
     3661 cttgattaaa tgcaaaatta cagcctcttt cttgttttgg ataggaaaag tcgtattgag
     3721 tctgagagtc tttcattatc tctgattata ggtataattg ttattatgac aaattctgta
     3781 tttgcacagg cacagcaaga caatacaata ggtgtaaaga tcatatcgcc tatcacaggt
     3841 caacaagttc cagttggtga acttacaata tcaggaatat ctacagataa tgctactact
     3901 gattgtacag tatatgctga ttggaataac ttaaaaccat ttcaaaaagc tatagcaaca
     3961 ggtccaggtg gaggaagtga ctattcaaaa tggaatttta catacacacc acaatatcat
     4021 ataattacaa atggaacaaa tgagctaact
//
LOCUS       DATAAS010000148         4201 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_135009, whole genome shotgun sequence.
ACCESSION   DATAAS010000148 DATAAS010000000
VERSION     DATAAS010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4201)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4201)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4201
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_135009"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            978..1685
                     /locus_tag="VHF08_02400"
     CDS             978..1685
                     /locus_tag="VHF08_02400"
                     /inference="COORDINATES: protein motif:HMM:NF014582.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HEX2067530.1"
                     /translation="MSLEVLDILRVIALLSFAGGTSFLGALISKYKKFGDQQILFLTA
                     FGAGILISAAIFEMVVEAEKIVGITLTLLFFIGGSIIFTVADVIAEHRGGGAGILLGI
                     GLDSIPESLAIGASIAAGPGLAIAILIGIQNVPEGIASYREMRSGKTAFSNSKKALIA
                     IGIVSIIPIILGLIGLFYLQGMTYVIGLTFALSAGGIFYMLHYDMIPRAHKERRWLPT
                     FGAVLGFIIGFTITRLI"
     gene            complement(1817..1969)
                     /locus_tag="VHF08_02405"
     CDS             complement(1817..1969)
                     /locus_tag="VHF08_02405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067531.1"
                     /translation="MSDILREDEVKEVVNKGQESKKRAGNKIVNPDRDINAEYQKETS
                     KEKIIE"
     gene            2950..3339
                     /locus_tag="VHF08_02410"
     CDS             2950..3339
                     /locus_tag="VHF08_02410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067532.1"
                     /translation="MQNQVSKGEKGAQKVESPLNLTFEEVCPIWSSKLKTGLNEKDKI
                     TMRNDSKYCMVGEAWGFTGRHAGYYIAPLIPFVGCWTCVIYGRKFGSLAKKNYSHLSN
                     YEPLVGDFIKHWNEKHIHITKKLRKNI"
BASE COUNT         1360 a          638 c          677 g         1526 t
ORIGIN      
        1 gaaccgaaaa aatgcaaatt cgctcatatg acagtttctt catatttatt tatacagaaa
       61 ctattataat aggtttgagt ttttttattt gtttatcttt tacattttat aaaagaagaa
      121 atggaaatta atgaatgcag actggcatta tgtctttttg attgatctga accacttcca
      181 tcagattatg taattagatt tgatttaatc taattacaca caataagttg gtttcaattt
      241 gattgactct ataaatttca ttagatattt gaatataagt catgagatat tttatcatag
      301 cttctccttt ttctcaacgg tatttcaaag agccttacct cttctctaaa gttaaacttg
      361 gcataaattg aaaatgatct agatctaatt tctagactga tcatgctaac atcattttgt
      421 aagagacgat aacgattaat tgcattatat aagatgctaa gatgtaccta ttcgaagaaa
      481 aattttgacg aaattatctg caattcagaa cattttgtat tgcagacata aataaggatg
      541 tggatactcc taatgtcgat tgtttttagt acacttgcaa ctgctattac ataatatatg
      601 ttcagaggga cagattgcat gattgattgt ctgttgttga attttgagtt atagtagtta
      661 ttttgttcta tctaatatct ccactgattt tcccaacagg aggagatcgc aagtattgtg
      721 tgaattgctg ttcctgtcac tctttacctt ctctgcagtc agaacagcaa atttcataat
      781 tatacaaaga acgaaaagtt accttagata tgcctctaac tatgctcata aatagtaatt
      841 ttgaattttg aagctacttc tttttttata atttcaaaat aagcaatatt ggttatgatt
      901 gttatcttaa attctttaga ttagcatcaa aagcgtaact gcaatagtta ttagatataa
      961 tttcttgaac caatatagtg tctcttgagg ttctagatat tcttagagta atcgcgttac
     1021 tctcttttgc tggtggaacg tcatttcttg gtgctttgat ttcaaagtat aaaaaattcg
     1081 gtgaccaaca aatattattt ttaactgcat ttggtgctgg aattcttatc tctgctgcca
     1141 tctttgaaat ggtcgttgaa gccgaaaaga tcgttggaat cacattgaca ttattgtttt
     1201 ttattggtgg ttcaataata tttaccgtag cagacgtaat agcagagcac agaggtggtg
     1261 gagctggtat ccttcttgga attggattag attcaattcc tgaatcactt gccattggcg
     1321 cttccattgc ggcaggtcct ggtctcgcca ttgctatctt gattggaatc cagaatgtcc
     1381 cggaaggtat tgcatcttat cgtgaaatga gatctggaaa gacagcattt agtaatagca
     1441 agaaggcgct cattgctata ggaatagtat caataattcc aattattctt ggtttaattg
     1501 gtttattcta tttacaagga atgacatatg ttatcggatt aacatttgct ttatcagctg
     1561 gaggtatatt ctatatgttg cattatgata tgataccaag ggctcataag gaaagaaggt
     1621 ggctgccaac atttggtgct gtcttaggat ttataattgg ttttactata acaagactga
     1681 tttgatcata cctaatgtta tttgatcaaa cttatcatca tactacccta taataattaa
     1741 ttacgaaaat taatagtata gttaatatag acatctgtat atatctatac atatatacat
     1801 attccattaa gaaagtttat tctattattt tctccttgct tgtttctttt tgatattcgg
     1861 catttatgtc tctatctggg ttgacaattt tgtttcctgc tctcttttta ctttcttggc
     1921 ctttattgac tacctccttt acttcatctt ctcttaatat atctgacatt ctattacaca
     1981 tatttggata acatcggata tagttagatt gataaattat actaaagaga atctgtcatt
     2041 aaaaaagtaa gatcttctgg tatgattgct tgctattttg tattttgcca ttatattggg
     2101 cttattctaa tatgtcagaa tacgccactc tataagatca tctccacgat tgtctcctct
     2161 actaatctgt tctagatatt ttatatccat catattggtc agtaaatctg tattagaaaa
     2221 tgtagttgtt atctagtgtc gatgcttgaa agattttact gatgccagaa gccatcaccg
     2281 tcgctaagac tttcgttagg cttgtcctcc cctaactata tcttttgtta atttctatgt
     2341 agctatgtca agatctcagt gagcctaatc ctcaggcaca gcaagattat tcaatgattc
     2401 agaaagttga ctttggttcg tgatctttgt ggtgtctaat atatataatt tgtcatgtgt
     2461 ctcctcattt gatagaaatc atgagatctt atatattgaa ttgtacttct tttatctctt
     2521 ttattttact ctggaccagt tcgaacaaat aattgctctg aaatatggcc tattttttgc
     2581 actgatccta gtaaaaactt attgttatga ttcactgata tgatatacaa tcacgtttaa
     2641 ttcgcatgct gtggcatcgc tgatacttga tcatgaataa ctgctaaata aaaattaact
     2701 ttacagtata ctgaatttct aatgttagca atgtcagtta tcgactcaat atggttaaaa
     2761 atacctgtgg cgcctcagct tatcgagcag agtttcttta gtgcttgatg tgaatctcgt
     2821 tcaactgctg gtttattacc aaaaattctg tagaaactac ttattagagt attatcggta
     2881 ctaatgcttt tgatccaatt attacacatt cgctaaatta ttatagtagt aatagaatgt
     2941 acattgaaaa tgcaaaatca agtgtcaaaa ggagaaaaag gagcacaaaa ggtagaatcg
     3001 ccattaaatc taacttttga agaagtgtgc cctatttggt ctagcaagct gaagactgga
     3061 ttaaacgaaa aggataagat aacaatgcgt aacgactcta aatattgtat ggtcggtgaa
     3121 gcatggggat ttacaggaag gcatgcaggt tactatatag ctcctttgat tccatttgtt
     3181 ggatgttgga cctgtgtaat atacggacgc aaatttggca gtcttgctaa gaagaattat
     3241 agtcatctaa gtaattatga gccactagtt ggtgatttta ttaaacactg gaatgaaaag
     3301 catatccata ttacaaaaaa gttgaggaag aacatatagc atttctattg atatagaaaa
     3361 aaataagaaa ataaaagaat agtgcataaa tatctgattg tttatatttt cttatttttc
     3421 tctgactttt attattattt tacaaagaag ttatcattag ttcaatatat aatatcttta
     3481 tacaacaaat tttaagttta gcataatatt aagatttagt ataattatgt catatataca
     3541 tcaaatattt ctctttttta atatttaaag taaaaattgt atgtttgttg tcataacata
     3601 taaattactc atatacaaag atagagataa ataattgcat aaatagagat aggtaccctc
     3661 cgtatcaaga gcgattgtgt cttctcgata ggaggatgaa tctatctttt atcattgaac
     3721 tcgtcattat aaacgggatc tgtattcaca ttcggcggcc tacatctcct atcctaaaaa
     3781 acagacacca ttaatatcta tcatatatag aaaatccaat taaagtaatt taaaaataaa
     3841 accgacaaat atcttagtaa aatagaattg acacattgat attctgatct tatgtgtata
     3901 gaagaacatt ataacaaacc tgattagtaa agcagctata agtcaagaat gatataataa
     3961 ggaaaaaggt aaccaaaatt ttagccaatt acttcgtaag ccagttagat ttaaaggaag
     4021 aatagtgaca ataaagtttg cttatatgcc accctccatc gttttattga ttgcttttgt
     4081 ttgcattatt actgctgcat taacaataaa tccgctatac caagtatatg cagattctct
     4141 taaaaacgct ttgaagcaaa gaattggtaa ctatgaagta gagatgataa cagatccaaa
     4201 a
//
LOCUS       DATAAS010000149         6151 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3374948, whole genome shotgun sequence.
ACCESSION   DATAAS010000149 DATAAS010000000
VERSION     DATAAS010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6151)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6151)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6151
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3374948"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            229..1104
                     /locus_tag="VHF08_02415"
     CDS             229..1104
                     /locus_tag="VHF08_02415"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2067533.1"
                     /translation="MRSGRIEDTDKVGKIIFEAFSAIADKHSFPPDYPSVDVARGLAS
                     SFLSNPRFYSVVAEDTSTGEDKGMVVGSNFLDERSNLVAGVGPLTIDPKYQNKGTGRQ
                     LMINILERAKNKNFSAIRLLQASYHGRSLALYATLGFEVREPISNMQGKPIQEAIPRR
                     SVRAATESDTESCNTICKTVHGHDRNGELQDSIKQGSAKVVLHENKITGYTCGLTFFN
                     HSVGLTNDDLKALISSATNDDSYGGPGILIPSRNTNLFRWCLNNGLRIVQQLTLMTIG
                     LYNEPAGSYMPSILY"
     gene            complement(1357..1890)
                     /locus_tag="VHF08_02420"
     CDS             complement(1357..1890)
                     /locus_tag="VHF08_02420"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2067534.1"
                     /translation="MSSIEEIIRFRGKIDRYLINYAPHWQSKKHEEGMQQLQERKEKL
                     SSFAKRILIVDDDQDITFTFKKAFEEANWIGGNSNKISLHVDAYNDPLVAFSEFKPDF
                     YDLMLIDINMPKMNGFDFCLKVLEQDVNPRFCFMSSGLINQEALREQYPSLSIGCFIK
                     KPVTIEDLVRRVKAELD"
     gene            complement(2334..2588)
                     /locus_tag="VHF08_02425"
     CDS             complement(2334..2588)
                     /locus_tag="VHF08_02425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067535.1"
                     /translation="MVILGNDILGYQQSTIHTENNGQLAMKIWVVMAKVEELQARSVD
                     KVFDSKEKAEQYSEGQNRKEMTQFVNIGGIDRSIEEWDVE"
     gene            2747..3304
                     /locus_tag="VHF08_02430"
     CDS             2747..3304
                     /locus_tag="VHF08_02430"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2067536.1"
                     /translation="MVDSNDLEEGNEFVGYRQYIGCKEYDRTIMNKLNSLRNPNLINQ
                     SIQQQDQLNQINKNCPRSKRIMLVEDEDDIVLLFKMILESDVGLKVDSYTEPFSALNN
                     FRSGQYDLIMIDIALPRMNGIELYYKIRKLDNKVKICFLTAGEMYYEEIRKQVFPELE
                     ANCFIRKPVANEDLIKSVKDILEIQ"
     gene            complement(3469..3597)
                     /locus_tag="VHF08_02435"
     CDS             complement(3469..3597)
                     /locus_tag="VHF08_02435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067537.1"
                     /translation="MAKSKGSKDMIQLQKFVKSIEDIVFITKALQKYRKAGSDIST"
     gene            complement(3923..4132)
                     /locus_tag="VHF08_02440"
     CDS             complement(3923..4132)
                     /locus_tag="VHF08_02440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067538.1"
                     /translation="MQSALFILKCLSEGKNEEYLIQRFDNDEQLVRIWMNLLTELKLL
                     MVNVVGEYVITNKGKDYLQKYNPHL"
     gene            4666..5583
                     /locus_tag="VHF08_02445"
     CDS             4666..5583
                     /locus_tag="VHF08_02445"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEX2067539.1"
                     /translation="MSLTGLTIAITGSRRGSELARIVENFGGKPYVAPTIGIDASLET
                     PDEAIVEFIKKITKQDIDYMIFMTGPGVFSLMSIARSYGMEKILLEALQKVNVVARST
                     KPEVVLKKYGIKVDLVPQENTAQGILRLLKNIGILGKSVAILWHGGYQMQLREELYKG
                     GAAKVIEASTYRYSLELKNDGASILRSMGFNYLDPQIEMVVKLIADIKSGRIDVITFT
                     SPPSVHGLFKIANIKHTERSLKESLNTNVIVAAVGPSTKEAIERNGVFVDVMPEIYKM
                     GTMIKSISDFVVRNNISKKQDLESKSQIK"
     gene            complement(5593..5742)
                     /locus_tag="VHF08_02450"
     CDS             complement(5593..5742)
                     /locus_tag="VHF08_02450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067540.1"
                     /translation="MVLLSPKAVASLLSAASTNSNAVLAESADIAFYDSLNIQKFVFN
                     KTNHD"
     gene            complement(5901..>6151)
                     /locus_tag="VHF08_02455"
     CDS             complement(5901..>6151)
                     /locus_tag="VHF08_02455"
                     /inference="COORDINATES: protein motif:HMM:NF018533.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067541.1"
                     /translation="KLADLLLDQTFVAGIGNKYKSEILFLQKLWAFNPARSLSLSKQQ
                     RLLKSIREVLKAGYLNAGRTRSQQKGEPSNKWDYRHWV"
BASE COUNT         1987 a         1076 c         1062 g         2026 t
ORIGIN      
        1 atcatggtca ttgtttatac ttcaagctat atgttatttg gaatggaaat gagaaaaaaa
       61 taacgtgatc actatttttt tctcctatct agtttgacat tgaagatctt tctaacaatg
      121 aagatggatg taagtagcaa aaaaaagatg atgaactaaa agaatataac ggctgcccca
      181 taggtacttt tgtatattca tttgattcag acggagtata ccttcagatt gaggtctgga
      241 aggatagagg atacagataa ggtaggcaag ataatttttg aggctttttc agcgatcgct
      301 gacaaacata gttttccacc tgactaccca tctgttgatg ttgcgagagg tctagcgtct
      361 tcttttctat ccaatcctcg attttattct gtagttgctg aagatactag tactggtgag
      421 gataaaggta tggtagtcgg aagcaacttt ttagatgaac gctcgaattt agtagcagga
      481 gtgggaccac taacaatcga tccaaaatat cagaataaag gtacaggcag gcagttgatg
      541 ataaatatac tggagagagc taaaaacaag aacttctcag caatacgttt actccaagct
      601 tcttatcacg gtcggtcatt agctctctat gctactctag ggtttgaagt aagggagcca
      661 atctcaaaca tgcagggaaa accaattcaa gaagctattc ctagaagatc ggtgcgtgca
      721 gcaactgagt ctgatactga gtcatgcaat actatctgta aaacagttca cggtcatgac
      781 agaaatggcg aactacaaga tagtataaag caaggaagtg ctaaagtggt tttgcacgaa
      841 aataaaatta caggttatac ttgcggattg acattcttta accattcagt gggattaacc
      901 aatgatgacc tcaaggctct gatctcctca gcaactaacg atgatagtta tggagggcca
      961 ggtattctaa ttcctagtag aaatactaat ctttttcgct ggtgtcttaa caatggactg
     1021 aggatagttc agcaacttac cctcatgaca attggattgt ataacgaacc tgctggttcc
     1081 tatatgcctt cgattctgta ctgagtcatg gaacgttgca cctacagaat cagcagctga
     1141 caatataaag acataagttg tcatcaagac tttcttgttt tgctgacaat cgatagacaa
     1201 aagaacatct cggtgggaga atcaaaatga accaatacaa cagtatattt tagcggatat
     1261 ctactcatgg cttgaagtca tcctggtctt tcacttcctc tattactact attacattaa
     1321 ctatcgaagt aaattacgac ttcgtcttag tccagtctaa tccaactctg cctttactct
     1381 tctaactaga tcctctattg taacaggctt tttgataaaa catccaatac tcaatgatgg
     1441 gtattgttct cttaatgcct cctggttaat aagaccagaa gacataaagc aaaatctagg
     1501 attaacatcc tgctccaata cctttaaaca aaaatcaaaa ccattcattt taggcatatt
     1561 aatatcaatt agcattagat cataaaagtc aggtttaaat tctgagaagg ctacaagagg
     1621 atcattatag gcatcaacgt gcaaagaaat cttgttgctg ttgccaccaa tccaatttgc
     1681 ttcttcgaag gcctttttga atgtaaatgt aatgtcctga tcatcgtcta caattaggat
     1741 tcgtttggca aaggaagata acttctcttt tctttcttgt aattgctgca ttccttcctc
     1801 gtgttttttg ctctgccaat gaggagcata atttatcaag tacctatcta tcttccccct
     1861 gaaacgaatg atttcttcaa tagaactcat atatcatcat tgccaatatt atacttttaa
     1921 gcaaattctt actgagtttt tggtgaaatt ctttgttttg tcgtttattt gacatttttt
     1981 ggggaattta aatacatatc gatgttcatt aattacattc gtactcttaa tcgtttttcc
     2041 tccatcatca gaatagatct attactcgct attgataaag gaagactaat tgtaaaagta
     2101 actcctttcc tgctacagca aaaattagtc ataaaatgtt actcatactc tacactacta
     2161 taatatacaa aatagatcac tcccacatca ctattatgag catcatactc ttctgaaggt
     2221 tatggttctt cctctatatt gtttgttgaa cggcgccacc aacatctgat atcgaatctc
     2281 ttgtttatca aatatctaac aaattggcag tctggtctga ttattataaa atattattcg
     2341 acatcccatt cttctataga acggtcaatc cctccaatat ttacaaactg tgtcatctcc
     2401 ttcctatttt gaccttcaga atattgttct gctttttctt ttgaatcgaa taccttatca
     2461 acacttctag cttgtagttc ctcaactttg gccatgacta cccatatttt catggctaat
     2521 tgcccattat tttctgtgtg tatagttgat tgttggtatc ccaatatgtc attccccagt
     2581 ataaccattc tgtaccctat taattctagt taccaaccgt gcttagaaat aattacggtt
     2641 tatgattaaa cattcttttg tttaatatct tctgtgtaaa tttgactagg gttaatctaa
     2701 aaagatgcat gtatgtaata ggatgaagaa ttgaatgctt tcatgtttgg tagactccaa
     2761 cgatttggaa gaggggaatg aatttgttgg gtatcgccaa tacataggat gcaaggagta
     2821 tgacagaaca atcatgaaca agctcaactc tcttaggaat cccaacctca taaaccaatc
     2881 catacaacaa caagatcaat taaatcaaat taacaaaaat tgtcctagat ctaaaagaat
     2941 tatgctagta gaagatgaag acgatatagt actgttattt aaaatgatat tagaatcaga
     3001 tgtaggacta aaagttgatt catatactga acctttctct gccctgaata atttcaggtc
     3061 tgggcaatat gacctaataa tgatcgatat tgctttgcct agaatgaatg ggattgaact
     3121 ttattataaa atcaggaaac tagacaataa agtcaaaata tgtttcctaa cagcaggtga
     3181 gatgtattat gaagagatta gaaaacaagt gttcccagag ttagaagcta actgctttat
     3241 tagaaaacct gtcgcaaatg aagacttgat taaaagtgtc aaagatatac tggaaattca
     3301 atagttctac atatctaaga ggaagtttac gaattatcgc ctgtaggtta gtactaaagt
     3361 tcgtgcccac tgaacgttgc aactgcaccg gactttgtag gatcccaatg ggataaatct
     3421 ggatatcatc cataaagtat acctttacaa ctttttctgc agactaagtt atgttgaaat
     3481 atcggatccg gctttcctat acttttgtaa tgctttagta atgaaaacta tatcttcaat
     3541 gctttttaca aacttttgaa gttgaatcat atccttcgat cccttacttt tggccacgag
     3601 aaaatctgtt gctagtttgt tacttctaga ttttcactgt atgtatctat atttagaata
     3661 gaaaagtgtt ccctgaatat attacataca cccttctagt tagaaatata acaaaaatgg
     3721 gatcagaggt agttaattta attttcaaac acttctcctt gtcctataag tgtaaatttg
     3781 tattatctta tctctgtttc tattaatcta ttcaatgtga cctgtgttat aaaatgattt
     3841 gtcaatatac aaatataatc atctctacaa taattgcaat ttatgtacat aatctggaaa
     3901 cgagttttta gctttaatta cattacaaat gaggattata cttttgaagg taatctttgc
     3961 ctttattggt tataacatat tctccaacta catttaccat aagaagtttc agttctgtga
     4021 gaaggttcat ccagattcta accaattgct catcattgtc aaatcgttgt attaaatatt
     4081 cttcattttt accttcagat aaacatttca aaatgaataa tgcagactgc atctctgaca
     4141 ggttatctat ataggaattt tttgttatcc tcgtttttcc tctttctgct ctacttgact
     4201 ctgcaattta ccgtcaatac tgaataataa tagactattc atgcaatact ttttacatat
     4261 tatcagatta tgagttcaac caatcagctt taagtataag gctttctaat gtactaatta
     4321 gcctggttat acattttgta acagatagaa ttttggaatt ggtgtctcta ccgattagaa
     4381 taacaactat attgttattc ctatttggtt caagcctgag taaacccttt gctataagta
     4441 gtatagtgct gcaacaaatt taatgacttt ggattattct cttatccagt acgttatcta
     4501 cttagaacaa gtctcattcg tgtgggatga gttaggagtg gtagtgcttc aactacttta
     4561 aataacttca aagggttata atatacaaag tgaatgtata gaatagggat tattcagttt
     4621 tataatgact ccaaaatatc ttcaaacggg atatgattat aaccggtgtc actaacagga
     4681 ttaactattg caataactgg cagccggaga ggatccgaac tggctcgtat tgtagaaaat
     4741 ttcggtggta aaccatacgt tgctcccaca ataggaattg acgcaagttt agagacccct
     4801 gatgaagcca ttgtcgaatt cataaaaaag ataacaaaac aagatatcga ttatatgatc
     4861 tttatgactg gtccaggagt cttttctctg atgtctatag ctaggagtta tgggatggaa
     4921 aaaatcttgc ttgaagcttt acagaaggtt aatgttgttg caagaagcac aaaacctgag
     4981 gtggtgttga aaaaatatgg tataaaggta gatctggttc cacaagaaaa tacagctcaa
     5041 ggcatattaa ggctacttaa aaatatagga atactaggaa aatctgttgc tatattatgg
     5101 catggtggat accaaatgca attaagagag gagctatata aaggaggagc agcaaaggta
     5161 atcgaagctt ctacttatcg atattctctc gaacttaaaa acgacggtgc ttcaatcctc
     5221 agatcaatgg gatttaatta tcttgatcca cagatagaaa tggttgtcaa actcatagcg
     5281 gacattaaaa gtggtaggat tgatgtaata acctttacaa gtcctccttc tgtgcatggt
     5341 cttttcaaga tagccaatat taaacataca gaaagatcat taaaagaatc tcttaatacc
     5401 aacgtaattg ttgcagcggt aggcccatct accaaagaag caatagaaag aaatggggtt
     5461 tttgtagatg ttatgcctga aatctataag atgggcacaa tgatcaagtc tattagtgat
     5521 tttgtagttc gaaataatat ttcaaaaaaa caagatctgg aatcaaaatc tcaaattaaa
     5581 taaaattaat aattaatcat gattggtttt gttaaataca aatttctgta tattaagaga
     5641 gtcgtaaaat gcaatatctg ctgattcggc caatactgca ttggagttag tcgatgcagc
     5701 agatagtaaa cttgctacag cttttggaga taacaatacc atctcaaagg ctaatagttc
     5761 gaattgggta aaatttatga taatacattg ttgcatagcc tacggctttt gaaaccttga
     5821 gcaccaaaat gtaatacggg tgcttgattg tctatccata actatttttg taccatatac
     5881 ccaacatggt ttgcctgctc ttaaacccag tgtctgtaat cccatttatt agatggttct
     5941 cctttttgtt gagatctcgt acgtcctgca ttgagatagc cagcctttaa tacctctcgt
     6001 attgatttta ataacctctg ttgtttagat agtgaaagac tacgtgcagg gttgaacgcc
     6061 cagagctttt gtaaaaaaag tatctctgat ttgtatttat taccaatgcc tgcgacaaag
     6121 gtctgatcaa gcaagagatc tgctaatttc a
//
LOCUS       DATAAS010000150         2215 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4995754, whole genome shotgun sequence.
ACCESSION   DATAAS010000150 DATAAS010000000
VERSION     DATAAS010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2215)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2215)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2215
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4995754"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            153..683
                     /locus_tag="VHF08_02460"
     CDS             153..683
                     /locus_tag="VHF08_02460"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2067542.1"
                     /translation="MFENLPFYPSIRVGNAKYRAPGISCHLTIANKIYDKTITTLHLQ
                     AIKKNLSKKIKKRILIVDDEPDVNLLFKIVLEENGFVVDSYNEGLIALENFKADMYDL
                     LILDIKMPTINGFELYTKIRKIDKNIKICFSTASDINYKVFKEVYSTIEKNKFITKPI
                     GNDQLVKKVKELLDSN"
     gene            938..1132
                     /locus_tag="VHF08_02465"
     CDS             938..1132
                     /locus_tag="VHF08_02465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067543.1"
                     /translation="MRSCYVILTLVSDNYEWLESYRPEAKFGLFYVDHTIIDFNRKIT
                     EGAQTLKFIIAESISQSKQA"
     gene            1202..1645
                     /locus_tag="VHF08_02470"
     CDS             1202..1645
                     /locus_tag="VHF08_02470"
                     /inference="COORDINATES: protein motif:HMM:NF015442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP cone domain-containing protein"
                     /protein_id="HEX2067544.1"
                     /translation="MSKKKEEKLSLIVQKRDCNREPFDQEKMARAVSRAGTPFVMALD
                     IAKTIKTNKDLIQKNIVSSDELRQLVTQELRNRNESTIAESYSGYSKNKVTTDIQEEI
                     TSNNNKYNSKVGQTTRTHAKQFAMDRNKGASRGSIGRQRHATGGS"
     gene            complement(2034..>2215)
                     /locus_tag="VHF08_02475"
     CDS             complement(2034..>2215)
                     /locus_tag="VHF08_02475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067545.1"
                     /translation="VVIAATVVIAATVVATVVIAATAATVVIAATAAIAAMVNSCYSL
                     QLSKIQDIDLIQENY"
BASE COUNT          866 a          320 c          345 g          684 t
ORIGIN      
        1 taaatattga tataatatag agatccatta taaatattat gaatatatgt ttatgattaa
       61 ttataattat gtaataatag tagactaata tcttaaaaaa taataaaaga gctataataa
      121 atgaaaaatg tcaacttgtg atatcttaac ttgtgtttga aaatttacca ttctatcctt
      181 ccattagagt aggcaacgct aagtatcgag cacctggaat aagttgtcac ctaactattg
      241 ccaataagat ctatgataaa acaataacaa cattgcatct tcaggcgatt aaaaaaaatt
      301 taagtaaaaa aataaagaaa agaatattga tagtagatga tgaacctgat gtcaatttac
      361 tgttcaagat agttttagaa gaaaatggtt tcgtagtaga ctcatataat gaaggtctca
      421 tagcattgga gaatttcaaa gctgatatgt atgatctgct aattcttgat attaaaatgc
      481 caactataaa tggctttgaa ttatatacaa aaataagaaa aatagataag aatattaaga
      541 tttgtttttc gacagctagt gatattaatt ataaggtatt caaagaggta tattctacaa
      601 tagagaaaaa taaatttatt accaaaccaa ttggaaatga tcaattagta aaaaaagtaa
      661 aggagttatt agattcaaac taaacaataa gctatttcat aagagacaca aataccaaga
      721 gaaatgaaga ggtaattatg taaatgatat caattcataa ggtataagtt aaaagaaaat
      781 tgaatataga caaacacgga atatgaatag aatacaatta tatcaatatc agtcaaacag
      841 aaaaaaatat taaaatcagt ttaattcaga gaagattaag caaattagat ttattggaga
      901 ttcaaagtct agatataatg gaaggacatc gttttctatg aggagctgct acgtcatcct
      961 tacactggtc tcggataact atgaatggct tgaaagctat agacctgaag caaaatttgg
     1021 attattttat gttgatcata caataattga ttttaatcgg aagataacag aaggcgctca
     1081 aacattaaaa tttatcatag cagaatcaat ttcccaaagc aaacaagcat gatgttctct
     1141 aacaatcaat cctcttacac ttatgataaa tcattaagag cgttgttatc cattaataaa
     1201 tatgtcaaag aaaaaagagg agaaactatc attaattgtt caaaaaagag attgtaatag
     1261 agagcccttt gatcaggaga aaatggcacg agcagtcagt cgtgctggta cgccatttgt
     1321 aatggcatta gatatagcaa aaacaatcaa aactaataaa gatttgattc aaaagaacat
     1381 agttagttca gatgaacttc gacaattagt tacccaagaa ttgcgtaata gaaatgaaag
     1441 cactatagca gaatcatatt ctggatatag taaaaacaag gttacaacag acatacaaga
     1501 agaaataaca tctaacaata acaaatataa ttcaaaggtt ggtcaaacta ctcgaactca
     1561 tgcaaagcaa tttgcgatgg ataggaataa aggggcaagt cgtggttcga ttggtagaca
     1621 aagacacgcg actggcggat cataataaac ttttctagat tgctctgtat tttagtatat
     1681 cattctaagg cagcaattgg actcaacttc tattttgttg aatatatcat gtaaatctag
     1741 ttctttactg taactacata cttttaatta tagtaatcat aatcataata tctcagcccc
     1801 tttatcggtt ctttaatcat attcttgcat gcaaagatca gaatatcctc agcgacagct
     1861 ctgctaattt caatttaaaa tctctgatat ctatacttcc aataaattag taaactcaaa
     1921 tttgcaatgt aggaattatt tgatttttac atcgttaaaa ccttacagag aatctcatat
     1981 cataatactc aatttcaaat taaataatgc agacaaatag tctatgtagt ggattaataa
     2041 ttctcttgga ttaaatctat gtcttgaatt ttagataatt gtagggagta gcaactattc
     2101 accatcgctg ctatcgctgc tgtcgctgct atcactactg tcgctgctgt cgctgctatc
     2161 actactgtcg ctactactgt cgctgctatc actactgtcg ctgctatcac tactg
//
LOCUS       DATAAS010000151         1886 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4997488, whole genome shotgun sequence.
ACCESSION   DATAAS010000151 DATAAS010000000
VERSION     DATAAS010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1886
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4997488"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1638..1711)
                     /locus_tag="VHF08_02480"
     tRNA            complement(1638..1711)
                     /locus_tag="VHF08_02480"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1675..1677),aa:Thr,seq:ggt)
BASE COUNT          693 a          276 c          269 g          648 t
ORIGIN      
        1 tgttactaga attgtatcta ccatgtatat ataacaaaac ttttgttgta tatacctatt
       61 gaagattgat gctgcaatta atgcaaaggg tcaaccattt ccagatgaac accatcgatt
      121 atagccttgt tattactttc ataacataaa atgattgact ggttaacaaa acaaatttta
      181 aagtgtgaac tgtttattaa taataaagaa gtaaaaaagc caaaacgcta gaagaatgag
      241 agaagttagg cagagaaaat ataccgatta tatcagaaag aattcatcat ctacacacat
      301 aatcaattaa tgtctttatt gcttcacaag agaaacatgt ctatcacctt tcttccgtgt
      361 aagttcaaga atataattat caactggttt gcttattata gaaatgaaac aagagctaat
      421 agatacacgg aagtagatat tattcaaatc ttgttgtata aaattgaata ctttctatag
      481 attttctacg cactctaagt aatatactaa atatttccac cttttattca catatgagtg
      541 gaaggcagga agcaggtatg tctgtgtctg cctaagagtc aaggctataa tatgttactc
      601 tccttgactg taaatatcat agaatcagtg tttcttatcg tcactcttta attatcataa
      661 atttactatt tcctgaaatt ttgagtgatt tgtcattttt atatgaccct cagcacctgt
      721 ttcacacaaa taaactgcac cgcatatttg acatataagg aatctcattc agacatcatc
      781 ttttattata tatataataa tacagcttca atagttcttt tatcttagta aaaagtgctt
      841 atgatttatt caaactgctg cttatgattt ctgcatcaat cattctaact taagggagtt
      901 ctgcaaactt atttttcttt aattactatt ttgtgtatga ttattcagag tgaaaacatg
      961 caaccaacac agccgtcaag tatatcatga gtacgacagt gtcctttgta ataactatta
     1021 atatgactga agtctaatgt gatgcatata ttcaaactat agtttaaatt acatttttta
     1081 gaattcaaag atattctatc taaaaactta ttcactttat atgatttaat tatctcttat
     1141 attgcaatgt aacaatacta ctcagcatat agaaatcaat cagccaaaaa cagtaaccat
     1201 aagagagaat attgattata gatgatgaca acctgacatt gattcaagta gaaggcaggt
     1261 ttagaagaga tgatgatgat gaattttaaa atgatatact caatgaggat atagaagttt
     1321 tgccaaatta taagacttgc cattataata tattctctag ttaaaatgcc aaatattaat
     1381 ggatataaat tatatagaga aataaaagag atgacaagat tgagatttgc tttttttgac
     1441 cgcatttgag cattattatg aggaatataa aaaaattatt ttctaaacta gatgcagaat
     1501 tttttactaa taagccaatt tcaatatatt gtgtggccaa gagaataagg aaaaactaga
     1561 taataaaata caagaaagct atagatattg atatccaaaa aattttgttg caatcataga
     1621 cggtatattt attggaaagc cttgggctgg atttgaacca gcgatctttg tcataccaag
     1681 acaatgctct tcctaactga gctaccaagg cactgttatt atcattataa agttattgtt
     1741 aatctatata taattaaaga catcattgac tttttgaaaa agaaaatatt ttgtaaagcc
     1801 tgttgaacca cccctaaatc tgaatgactt actatgaaaa actgttatta tgtataccta
     1861 tcatacactt ttgggataca ttattc
//
LOCUS       DATAAS010000152         2414 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4462887, whole genome shotgun sequence.
ACCESSION   DATAAS010000152 DATAAS010000000
VERSION     DATAAS010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2414
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4462887"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            526..1782
                     /locus_tag="VHF08_02485"
     CDS             526..1782
                     /locus_tag="VHF08_02485"
                     /EC_number="1.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004420 - hydroxymethylglutaryl-CoA
                     reductase (NADPH) activity [Evidence IEA];
                     GO_process: GO:0016054 - organic acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase,
                     degradative"
                     /protein_id="HEX2067546.1"
                     /translation="MKKFYKMNQSERLRYLKKITGLSAEDIAILQDPSSAFRFDNANT
                     MIENAIGIFALPLGIATNFVINGKEYLLPMAIEEPSIIAAASKAAKIAKSKGGFIAEA
                     DESIMIGQIQIVSLPVSEESAKINILSSKKEILELASSKSRFAVVKDLQVRQVQDKSQ
                     HNKGVMLLVELLVDVKDAMGANIVNTMCESIAPVVEQLTGGKAILKIISNYATKRLVK
                     CKAIFDKDDLGGQDVVERILYAYAFAYSDVYRAVTHNKGVMNGIDAVALATGQDFRAI
                     EAGVHAYAARDGTYRSITNWNKTEDGDLVGEIELPMAIGIVGGVASVHPMAKLALKIL
                     KVKTAKELAIILAAAGLAQNFAAIRALASEGIQKGHMRLHARNIAAAAGATGNQIEIV
                     ANKIAEERTINVDRAKEILALINKDN"
BASE COUNT          849 a          400 c          436 g          729 t
ORIGIN      
        1 cctacatctt cacaattgtt cgtgtgtata tcgcctttac ttggatcata gtatactatc
       61 acatcaagac tatctccgca gtcaaagtaa tctgcaccat gtccaccctc aagcagatca
      121 ttttcttcct ctccataaag ttcatcatta ccttctccaa ttactaaaaa gtatcatcaa
      181 atcctgcgaa aatgacatca tctccttttc cagcatatag ttcatctcct ctctcgccac
      241 cttctaaatt atcatctcca cttggcagga taagtcaata agttatacat tagaatgtct
      301 tataggtctt aaatattatt tatcaggtat ttaaagagtt ataaagatta gcttttgttc
      361 agacatcagt cagtaagagt aagattgctt gcttatttga tactatcacc tagcaaagta
      421 atatctctag tattgctatt ttatagcatt attttgtctt tttataagga tattcccacg
      481 tcacagttat taaagatctt gtacaattta tttgatcact tgacattgaa aaaattttat
      541 aagatgaatc aaagtgaacg tttacgctat ttaaaaaaaa taacaggttt gtctgcagag
      601 gatattgcta tattacaaga tccttcatca gccttcagat ttgacaatgc taatacaatg
      661 atagaaaatg caataggtat atttgctctt ccacttggta ttgcaacaaa tttcgtaatt
      721 aatggcaaag aataccttct accaatggct atagaagaac cttccataat tgctgcagca
      781 agcaaagcag caaaaattgc aaagagtaaa ggaggtttta tagcagaagc agatgaatca
      841 attatgatag gccaaataca gatagtctca ttacctgttt ctgaagaatc tgcgaaaata
      901 aacattctat ctagtaagaa agaaatatta gagttggcta gctcaaagag cagattcgct
      961 gttgttaaag atctgcaagt aagacaagtg caagacaaaa gccaacataa taaaggagtt
     1021 atgcttcttg tagaattact cgttgatgtt aaagatgcca tgggcgcaaa tatagtaaat
     1081 acaatgtgtg aatcaatagc tccagtagtg gaacagttaa ctggtggcaa agctatatta
     1141 aaaataattt caaattatgc aacaaagagg cttgtaaaat gcaaagcaat tttcgataag
     1201 gatgatctag gaggacaaga tgttgtggag cgaatcttgt atgcttacgc ttttgcatat
     1261 tctgacgtat accgtgctgt aacccataac aaaggtgtaa tgaatggtat tgatgcagtt
     1321 gccttggcta caggccagga ctttcgtgca atcgaggctg gagtccatgc atatgctgcc
     1381 agagacggta cctatagatc aattactaac tggaataaaa cggaggatgg cgatttagta
     1441 ggtgagatag aattaccaat ggccattgga atagtcggag gagtcgcatc agtccatcca
     1501 atggccaaac tcgcgttaaa aattcttaaa gttaaaaccg ctaaggaact tgcaattata
     1561 ttagcagcgg ctggtcttgc tcaaaatttt gcagctatta gagcactagc atctgagggt
     1621 atccagaaag ggcatatgag gctgcatgct agaaatattg ctgcagcggc aggtgccaca
     1681 ggtaatcaaa tcgaaatagt tgccaataaa attgcggaag aaagaactat aaatgtagac
     1741 agagcaaaag aaatccttgc attgataaat aaggataatt aaagtaacta aacataaaat
     1801 cgtcttgtaa tgaggtgttc ccattaatat tgacattata aggtgttgta cattctcaac
     1861 agacaatagt aaccatatat gaaattgaat atttggaaag tctacgaaaa ggaggttcta
     1921 attaaaatga tgaagttttg tattactcaa ttgtaagatc tatatcattt aatgataaat
     1981 tcaatcaagc tcaatgattg ttgactatcc taaaagaaca ataaaaaggt aaaaacaata
     2041 tcatttataa cgtcattact tacgttaact tcttttactg tatctttgaa tatattagaa
     2101 attactaaca aaagttatct catcgtcgtt taatacaaca atatcttcat ggaaatagat
     2161 tttgccttca agcaatctgg aaccatgaaa gtagaagaat cattcaaaga gtctagcttg
     2221 agaatattga ctttgacatg gagataaaga ggtgtaagat gagatgtatt caaacttagt
     2281 attaatactg tcaattagag agaagacaga atcttgtcaa aatgtctatg gatgaaagtc
     2341 aggcctcagc atttgcagga acctttacct ttgataagta acttttgata aattctgtaa
     2401 atcggacatg gcag
//
LOCUS       DATAAS010000153         2484 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5001119, whole genome shotgun sequence.
ACCESSION   DATAAS010000153 DATAAS010000000
VERSION     DATAAS010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2484)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2484)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2484
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5001119"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..463
                     /locus_tag="VHF08_02490"
     CDS             <1..463
                     /locus_tag="VHF08_02490"
                     /inference="COORDINATES: protein motif:HMM:NF024762.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2067547.1"
                     /translation="VNFPAHFLVKHILEDDNAEIIIDPFNSGRIMDDYALKELLDQSY
                     PRQNIPLTRAFVEKATPTQVLIRMLNNVKGSYYDAQDIDKAEISNEMIIALDQYNPDA
                     IRDKGMILLKREKLTEALEMLNLYLELDPEAQDADAILDIIRQLRTDRNGK"
     gene            complement(693..1565)
                     /locus_tag="VHF08_02495"
     CDS             complement(693..1565)
                     /locus_tag="VHF08_02495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase/PEP mutase family protein"
                     /protein_id="HEX2067548.1"
                     /translation="MQRSMVNISLREQIEDKKRIIVLPGVFDALSARIAEQVGFEAMF
                     QTGYGSAAALLGMPDYGFLNAGETIDNARRIIRSVNVPVLVDVDTGYGNPLSVWRIVR
                     DLESLGASGIFLEDQVWPKRCGHMTGKDVISKNDYISKLKAALEARKSKDFIIVARTD
                     ARAPLGIDEAIKRGREYRKIGADVIFVEAPKTVDELKKIADEIDAPLVANMIEEGVTP
                     NLSANELLKMGYRIAVFPLSGLYAAAFALREVFTELRKTGTTKQGRKMMVTFKEFNKL
                     VDLQRYLELEKRYL"
     gene            complement(1776..1940)
                     /locus_tag="VHF08_02500"
     CDS             complement(1776..1940)
                     /locus_tag="VHF08_02500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067549.1"
                     /translation="MNCPICGAIMIWLNGSISHDPPIKYYECRVCNIHVTKQPDGSYE
                     MVEAKKQKQK"
BASE COUNT          803 a          454 c          380 g          847 t
ORIGIN      
        1 agttaatttt ccagcccact ttcttgttaa acatattctt gaagatgaca atgctgagat
       61 aattattgac ccttttaata gtggcagaat aatggatgat tatgctctga aagaattgct
      121 cgatcaatca tatccacgtc aaaatattcc tcttactcgt gcatttgttg aaaaggcaac
      181 accaacgcag gtattgatac gaatgttaaa taacgttaag ggaagttatt atgacgctca
      241 agatattgac aaggctgaga tctcaaatga aatgataatt gcattagacc aatataatcc
      301 agatgccatt cgagacaaag gtatgatact attaaagaga gaaaagctta ctgaggcact
      361 cgaaatgtta aatctctacc ttgagctgga tccagaggca caagacgctg acgccatcct
      421 agacataatt aggcaacttc gtactgaccg gaacggaaag tgatggtaat ataattttcc
      481 tatataatca taaaaataat aataatattt aagatttatc taaatcgctc aaggtcacaa
      541 atttatctgc gtagccagtg aatataattt ttgaatgaca gatcctttgt tatagactag
      601 tcatgatatg aaatgtaata tgggcaataa ttcttctttt tattcattaa ttgtgttagc
      661 ctcgattaga tgatgatatc attaaatgca tatcagagat atcttttctc taattccaaa
      721 tatctctgta agtctacaag cttattgaat tctttgaatg taaccatcat tttacgtcct
      781 tgttttgtcg tgccagtctt tcttaattca gtaaacactt ctcttagggc aaatgctgca
      841 gcatataatc ctgataatgg aaatactgca attctataac ccatttttaa tagttcattg
      901 gcagacagat tgggtgttac tccctcttca atcatatttg ccactaaagg agcatctatt
      961 tcgtcggcta ttttcttcaa ttcatctaca gtcttgggag cctcaacaaa gataacatct
     1021 gcacctattt tgcgatattc tctacccctc ttgatagctt catctatacc aagtggagca
     1081 cgggcatctg ttcttgcaac aatgataaaa tccttgctct tacgggcttc taatgctgct
     1141 tttaattttg atatataatc atttttagaa atcacatcct ttcctgtcat atggccgcat
     1201 cgtttaggcc atacttgatc ctctagaaaa ataccacttg cgcctagact ttctagatca
     1261 cggacgatcc gccatacact taagggattg ccatatccgg tatcaacatc aactaatact
     1321 ggaacgttca cggaacgtat gattcggcga gcattgtcta tagtttcacc agcattgaga
     1381 aatccatagt caggcattcc caaaagagca gcagcagaac catatccagt ttgaaacatt
     1441 gcttcaaaac caacttgttc tgcaattctc gcactcaacg catcaaaaac tcctggtaat
     1501 actatgattc ttttcttatc ctcgatctgt tctcttaaag atatattaac cattgatctt
     1561 tgcattaact tataaaatac ggtggaaatt attaagtagt tatattcttc ttttattggc
     1621 atcttataat tatttgtttc ctcactaaaa ataataccgt attaggcagt agcactaata
     1681 aattaaatat aagaattttt tatgtatata attttcttcg gattgaggtt tgaagataaa
     1741 atattacatg tacttgtgac ttttttattg ttttcttatt tctgcttttg tttttttgct
     1801 tctaccattt catatgaacc atctggttgt tttgtcacat gtatgttaca cactcgacat
     1861 tcatagtatt ttattggcgg atcatgacta attgaaccat ttaaccatat cattattgca
     1921 ccacatattg gacaattcat cgtcatattc taattttgta tatgactatt aatatgcctt
     1981 ttattagctc taaaccacag ttaaattgat catagttatt tatgagttat attctatcac
     2041 actaatgcat tttacacagt taataatatt aaaacataga acttgataca ttagagagta
     2101 tcatagacct aacaaagata caatagtatc tataatgaga tcgatagact acaaaacgta
     2161 cttgatagga gatccgggtt aaagtcttgc tttggccttc tcagatctca gatttcatac
     2221 tctaacaggt tgaaaggtct aaatttatac atcattagac aggtcattga atatgactgg
     2281 tcaattcagg aggactttta tcctactttc ctacagaaag gaaaaacatg caatctatta
     2341 gaacacaatt agataatagt tctatagatc tatcataaaa tagtgaagct gcaacaatga
     2401 agaaaaaagc tcatgacaga agcaaaatta taaattctag tactatttag tgtaaccaga
     2461 taccgacttg tttcatgaaa tttt
//
LOCUS       DATAAS010000154         1626 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_688196, whole genome shotgun sequence.
ACCESSION   DATAAS010000154 DATAAS010000000
VERSION     DATAAS010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_688196"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(245..1051)
                     /locus_tag="VHF08_02505"
     CDS             complement(245..1051)
                     /locus_tag="VHF08_02505"
                     /inference="COORDINATES: protein motif:HMM:NF019846.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX2067550.1"
                     /translation="MNIQEFISSLPQSLVKNEDISIPDDVIRKLFRLADLCKTDVFFA
                     VGCGNNNAVKIAAKEFKVKRSVGIEIRKTLADKARKKIIRMKNAEIINEDISKTSFSD
                     ATVILFWFTDIDYIQPIIEKFETELKNGARVITAWSPPDLMLPTKTEFPFFVCQKPFK
                     YAKNIKEQIEAVYGNPCIDFTASWLLAEKYIDALEVVSAKYHRFVNIFQSMIIWINAW
                     NMGVACEEEIPPPVQTYIGILKTFFNIDLTDMISKKPIKLENNNKEKDIP"
     gene            1175..1504
                     /locus_tag="VHF08_02510"
     CDS             1175..1504
                     /locus_tag="VHF08_02510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MTH1187 family thiamine-binding protein"
                     /protein_id="HEX2067551.1"
                     /translation="MSENTIHAEISVIPIGIRSQTTTSMSKEIAAAFDAIQKIKGLKT
                     MLTPMGTQIESNNFANILKAIEVAHEVVRTAGAKRIMSTIRIDERLDKSISLEEKVES
                     VMEKIGK"
BASE COUNT          585 a          241 c          274 g          526 t
ORIGIN      
        1 tgggcattgt ctaccaaagg atactaaaat gttcttacaa tcatcaaagt ctattaaaag
       61 taagatatta caagcagcaa ttgaagtaga ccaagattat agacgatata gagaatctag
      121 agaaataaaa ggaatagatc aaaattcctt cctacagtca atttgatatt atattatcat
      181 aagagtaaat aagagtgaca taataagata gtgagaaaaa ttttagattg agtagaattt
      241 attgttaagg tatatctttt tctttattgt tgttttctaa tttaatgggt ttttttgaaa
      301 tcatatcagt taaatctatg ttaaagaaag ttttcaatat tcctatatag gtttggacag
      361 gtggtggaat ctcttcttca caggctactc ccatattcca cgcatttatc caaattatca
      421 tactctgaaa tatatttaca aatctatgat acttggccga cacgacctct aatgcatcga
      481 tatatttttc agcgagtagc cacgatgcag taaaatcaat gcatggattt ccatagactg
      541 cttctatttg ctcttttatg ttcttggcat atttgaatgg tttttgacaa acaaaaaatg
      601 gaaattccgt ctttgttggg agcattaggt caggagggga ccatgctgtt ataactcgag
      661 caccattttt taattcagtt tcaaacttct ctattatcgg ttgaatataa tcaatatctg
      721 taaaccaaaa tagtatgaca gtagcatcag aaaaggaagt tttactaata tcttcattaa
      781 ttatctctgc atttttcatt ctaataattt tttttcttgc cttatccgct aaggtctttc
      841 tgatttctat tccaacagac ctttttactt tgaactcttt agctgcaatt ttaacagcat
      901 tattatttcc acatcccaca gcaaagaaaa catcggtttt acagagatcg gcaagtctaa
      961 ataattttct tattacatca tcaggaatag aaatatcttc attttttaca agggattggg
     1021 gcagtgaaga tataaactct tgaatattca atgctaattt tttatatctt taacgattat
     1081 aaaaattaaa gcaaagataa tagcaacaac agaatgataa gggtggtata atgctaacat
     1141 tattctagct tagagacagt ataagcacta ggtaatgagt gaaaatacaa tacatgcaga
     1201 gataagcgtt ataccgattg ggataagatc gcaaacgaca actagtatga gtaaggagat
     1261 tgctgctgca tttgatgcta ttcagaagat aaaaggtctg aagaccatgc ttactcctat
     1321 gggaacacag attgaatcaa acaattttgc caatattcta aaagcaattg aagttgctca
     1381 cgaagttgtt cgaacagctg gtgcaaaacg aataatgtcc acaattagaa tagacgaaag
     1441 attagacaaa tcaataagcc tagaggaaaa ggtagaatca gttatggaaa agattggtaa
     1501 atgagaataa agaaaaggaa agaacaaaga gaaattagca tatactatcc ataattatgc
     1561 ttgaacataa gtatgaatga ttaatgagca tatcctatta tcgtgtagat taatttggat
     1621 caagca
//
LOCUS       DATAAS010000155         4684 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5002894, whole genome shotgun sequence.
ACCESSION   DATAAS010000155 DATAAS010000000
VERSION     DATAAS010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4684
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5002894"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(245..502)
                     /locus_tag="VHF08_02515"
     CDS             complement(245..502)
                     /locus_tag="VHF08_02515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067552.1"
                     /translation="MSFFALSLASITIAISSPAIHVIVAQEETEDFVELEMDNGTTIS
                     VANGSGMMLDDDTNVIENSSLTVMENGTIQSKNASDPDMSN"
     gene            complement(842..1633)
                     /locus_tag="VHF08_02520"
     CDS             complement(842..1633)
                     /locus_tag="VHF08_02520"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2067553.1"
                     /translation="MTKLEVKNITKRFKAIQGTDTISFNAIENICLSIEEGEFVCFVG
                     PSGCGKSTLLNILAGLDKPTEGEIILNGQPVTETGPDRIMVFQENALFPWLKVIDNVE
                     FGLKMAGLKKDKRRAIAIHYLDMMQLTKFADAFTYQLSGGMKQRVAIARALVMDPEIL
                     LMDEPFAALDSQTRDLLLVELQLIWARTRKTIAFVSHNIAESVCLGDKIVVFSSRPGR
                     VKKEIKVDYRRPRLSEDSNLHEYQRKVLDELKSEIIAARKMEDKF"
     gene            complement(2143..3327)
                     /locus_tag="VHF08_02525"
     CDS             complement(2143..3327)
                     /locus_tag="VHF08_02525"
                     /EC_number="2.1.1.213"
                     /inference="COORDINATES: protein motif:HMM:NF014103.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0030488 - tRNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanine(10)-N(2))-dimethyltransferase"
                     /protein_id="HEX2067554.1"
                     /translation="MISKDFMESIEGNTRLIVPAASLTKKVPPKTPAFFNPAAKLNRD
                     ISILLYRTFISECKHHNKSFADAFSGIGARALRVAVEVPEIENIYLNDVNILAIEAAK
                     IAAELNGVEEKCYYSINEVCKFLTQHSTKNAERFTIIDLDPFGTPAPFVDCVLRSILD
                     GGLISITATDTTVLCGVYPVICCRRYYGRSLNTNYTNEIALRLVISLIALTAARLDLA
                     IEPIFVHANLHYLRIYVKVFVSSSKANRVYDNIGYLRHCFRCGNRNVVERYSMSEVCD
                     ICGNSFSVAGQLWINKLFDKNLIGRLVSHELINNGIQGKNMMDRCQKLMSICMDELDD
                     IPFYFRGDEIASRLKINPYSLQTVIEKLSSSGYRASKTSFNPSAFKTNARMDEILDVL
                     RK"
     gene            3448..4122
                     /gene="rnhB"
                     /locus_tag="VHF08_02530"
     CDS             3448..4122
                     /gene="rnhB"
                     /locus_tag="VHF08_02530"
                     /inference="COORDINATES: protein motif:HMM:TIGR00729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEX2067555.1"
                     /translation="MQECKDILIGGVDEAGRGSIIGPLIIAGIAIKHLKLAELSKIGV
                     KDSKKLTKKSRASMFSRIVDLADSVCIYKIEPGEIDDNVFLNKLNKLEAEAMAVVINN
                     LHVDEVYIDCCDVNQERYKGYVKCRLVSCNTKLYSMHHADQLNIVVSAASIIAKVVRD
                     NEIQAIRRMHHSIGSGYPSDEKTMYFIREWVQKYKNAPWFARKSWRPLRTILYENRQV
                     KLTYFG"
     gene            complement(4110..4274)
                     /locus_tag="VHF08_02535"
     CDS             complement(4110..4274)
                     /locus_tag="VHF08_02535"
                     /inference="COORDINATES: protein motif:HMM:NF013437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006364 - rRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fibrillarin-like rRNA/tRNA
                     2'-O-methyltransferase"
                     /protein_id="HEX2067556.1"
                     /translation="MIKTRSIDVTMDPKSVIEQEAKKIEKRGFHIEQIIDLKPFDKDH
                     ALVYAVYYPK"
     gene            complement(4298..>4684)
                     /locus_tag="VHF08_02540"
     CDS             complement(4298..>4684)
                     /locus_tag="VHF08_02540"
                     /inference="COORDINATES: protein motif:HMM:NF013437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibrillarin-like rRNA/tRNA
                     2'-O-methyltransferase"
                     /protein_id="HEX2067557.1"
                     /translation="VKYNGDEYRIWDPFRSKLAAALKKGLKELPIMNGTRVLYLGAST
                     GTTVSHVSDIVGLKGIVFAVEPAVRVARELIENVASKRRNIIPIIEDARKPQSYFSVF
                     GKVDVVYSDIAQPDQTEIAVEIVLYI"
BASE COUNT         1522 a          857 c          752 g         1553 t
ORIGIN      
        1 tcatttcttt taacctactg gaatggaaat gtacaagaaa taggtagaag gaacaaaaat
       61 agaatgatta ttacatgaac aatacacaga aaagtttcgc aatacacgat aattttttta
      121 tacagttgat tatatcggtt aacagatcag tgaaagagta tactgatcag gtatggatac
      181 cgtctaaatg tggtgaaaga agcaagtgaa taagaatgaa agaattgttg cgattgatta
      241 tagttcagtt actcatatca ggatcagatg cattcttgct ctggatggta ccgttctcca
      301 tcactgtcaa agagctgttt tcaattacat tcgtatcatc atctagcatc attcctgaac
      361 catttgcaac tgatattgtc gtgccattgt ccatttctaa ttcgacgaaa tcttctgttt
      421 cttcctgcgc tactatgaca tgaatcgctg gactactgat ggcaatagtt atagatgcta
      481 aagatagggc aaaaaaagac atcaaagaac cgaatatgat gttggtttgt actttgttct
      541 tcacgcatac aataaaagct tctcggaaat ttatatattc ttatatgagg ttgaatacaa
      601 ttctcataaa gtagtcaaaa taaaatatat attctattta ccttacaata tgaatgaaaa
      661 ttctgaatgt taaatttgat gaacaaggaa caaagtatag caatgcgtct aatcaagtca
      721 ttaattcctt gagacatatt tttaattaat cttctttcag ttcatagttt cgtttgaatt
      781 ttaatctcat ctaactatca tatgataaga gtaacaaatc ttatcttttg atagaaaaaa
      841 gtcaaaattt gtcttccatt tttcgagctg caattatttc tgatttaagc tcatctaaca
      901 cttttcgttg atattcatgt aaattgctat cttcactcag tcgtggtctt cgatagtcaa
      961 ctttaatctc tttctttact ctacctggtc tgctcgaaaa caccacaatc ttatcgccta
     1021 gacacactga ttcagctata ttatggctta caaatgcaat tgtttttctt gttctagccc
     1081 agattaattg caattctact agcaacaaat ctctagtctg agaatccaat gctgcaaaag
     1141 gttcatccat tagcaagatc tcagggtcca taacaagagc tcgtgctatt gcaactctct
     1201 gcttcatacc accagataat tgatatgtaa aagcatctgc aaattttgtc aattgcatca
     1261 tatcaagata atgaatagct attgcacgtc ttttgtcttt tttaagtccc gccattttca
     1321 agccaaattc tacattatcg attactttaa gccatggaaa taaagcattt tcctgaaaaa
     1381 ccataatcct atcaggcccg gtctcagtaa ctggttggcc atttaatatt atttcacctt
     1441 ctgtcggttt atccaaacct gctaatatat tcaatagagt tgatttaccg cagccggagg
     1501 ggccgacaaa acaaacaaat tcgccttctt cgatagagag gcatatattc tctattgcat
     1561 tgaaggaaat agtatctgtt ccttgtattg ctttaaatcg ttttgtgata ttcttaactt
     1621 cgagtttggt caattaacat tacactctta aaagaggagg ttgttaaagt atatgttttt
     1681 tcaaaattca tttattttta taataaatta cgtcgtagaa ttggtttctt ttgtactatt
     1741 attggcatgt acatacttaa tcacatgaac ataaaatgag aataggatgg agcactctac
     1801 aagatagaac tgacattttt ataataataa aatttcagca atactcacta ttatcgatta
     1861 caaatagctt aattaaaatt aaatggacaa acattatctt ccaatacgga tttctagtaa
     1921 cgatagtgtg tgcggttttt taccaaagaa caccaattat cgcttagcac tctcccaact
     1981 atcataatac cgcagaatat aatcatatta ttatttcccg agtagcaccc atgataatgt
     2041 atataaccaa cctatccctg gcttctacct atctttctag gtaatcttga gataatttgt
     2101 ctgatttaat tacagtcaca agatgtaata ttacaacaac tactactttc gaagaacatc
     2161 taatatctcg tccatcctag catttgtttt gaatgccgaa ggattgaaac ttgttttgga
     2221 agctctatag ccagacgatg acaatttttc tatgacagtt tgtaacgaat atggatttat
     2281 ttttagcctc gatgcgatct cgtctcctcg gaagtaaaaa ggaatatcat cgagttcgtc
     2341 catacagatc gacattagct tttggcaacg atccatcata tttttacctt gaataccatt
     2401 gttaatgagt tcatgactga ccaatcgacc tatgagattt ttatcaaata acttatttat
     2461 ccacaattgg ccggctacac taaaactatt accgcagata tcgcaaactt ccgacatact
     2521 gtatctttcc acaacatttc tatttccaca tctaaaacag tgccgtaagt atcctatgtt
     2581 atcatacact ctatttgcct tactgctact tacaaagact ttaacataga tcctcaaata
     2641 atgtaaatta gcatgaacaa agattggctc aattgcaaga tccaatctcg ccgcggttaa
     2701 tgcgattaaa gagatcacta gacgaagagc tatttcatta gtataattcg tgttgagaga
     2761 tcttccataa tatctgcgac aacaaataac tggatagaca ccacataata ctgttgtgtc
     2821 tgttgcagtt atagaaatca atccgccatc aaggatcgac cttagtacgc agtcaacgaa
     2881 gggtgcgggg gttccgaaag gatctagatc aattatcgta aacctttctg cattttttgt
     2941 tgaatgttgt gttaaaaatt tacaaacttc attgatagag taataacatt tttcttcaac
     3001 cccatttaac tctgcggcta ttttcgctgc ctctatcgct agaatattaa catcgttaag
     3061 atagatattt tctatttcgg gtacttctac ggccactctc aacgctctag ctcctatacc
     3121 actgaaggca tcggcaaatg atttattatg atgtttacat tctgaaatga aggttctata
     3181 taataatatg gatatatctc tgttcaattt agctgctgga ttaaaaaaag caggtgtctt
     3241 tggtggaacc ttcttagtca acgatgcagc aggaactatt aatctagtat ttccctcaat
     3301 actttccata aagtctttac taatcataga ataaacgatt ctttagcata tacaaaatag
     3361 atgggataat aagaattatc attattttat cgtaaacata aaagatatag attaccaata
     3421 agtatatcag taaaaggatc aatattattg caggagtgta aagatattct aataggaggt
     3481 gttgacgaag caggacgtgg atctatcatt ggtccattga taatagcagg catagccatc
     3541 aaacatttaa agttagctga attatctaaa atcggtgtta aagattcgaa aaaactaaca
     3601 aagaaatcac gcgcaagtat gttctcaaga atagtagatt tagcagattc tgtttgtata
     3661 tataaaattg agcctggtga aatagatgat aatgtttttc tgaataaact taacaagttg
     3721 gaggcagaag caatggctgt agttattaat aatcttcatg tcgatgaagt ctatattgat
     3781 tgttgcgatg ttaatcaaga acgatacaaa ggatatgtaa aatgtcgtct cgtgtcatgc
     3841 aatacaaaac tgtattctat gcatcatgcg gatcaattga atatagtggt atccgcagca
     3901 tcaattattg ctaaagtagt cagagataat gagatccagg caattagaag aatgcatcat
     3961 agtataggaa gtggctatcc ctcagatgaa aaaacaatgt attttattcg tgaatgggta
     4021 caaaaatata aaaatgcgcc ctggtttgca agaaaatctt ggagaccact aaggacgata
     4081 ctttatgaaa atcgacaagt aaaattaact tactttggat aataaactgc atacaccaac
     4141 gcatgatcct tatcaaaggg ttttagatct attatctgtt caatatgaaa ccctctcttt
     4201 tctatttttt ttgcttcttg ttctataacc gatttaggat ccatcgttac gtcgatgctc
     4261 cttgttttga tcactatcag catcacgcct tttggtttta gatatataag acaatttcta
     4321 cggcaatctc agtctgatca ggctgtgcta tgtcagagta taccacatct accttaccaa
     4381 aaactgaaaa atatgattga ggttttcttg cgtcttctat aataggaata atatttctcc
     4441 gttttgaggc cacattttca atgagctctc tagccactct gacagcaggt tcgactgcaa
     4501 aaacgatccc tttgagtcct acaatatctg agacatgact aacagtagta ccagtggaag
     4561 cgcccaagta caataccctt gttccattca ttataggcaa ttcctttaat ccttttttta
     4621 aagctgcagc aagcttgctt ctaaagggat cccatattcg atattcatcc ccattatatt
     4681 tgac
//
LOCUS       DATAAS010000156         1554 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1274214, whole genome shotgun sequence.
ACCESSION   DATAAS010000156 DATAAS010000000
VERSION     DATAAS010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1274214"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..588)
                     /locus_tag="VHF08_02545"
     CDS             complement(<1..588)
                     /locus_tag="VHF08_02545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20 family protein"
                     /protein_id="HEX2067558.1"
                     /translation="MSFWGIEPEDWFRRFFSSSSRMPSSIGRGGWFGDMPRQLDEMRR
                     EMQRMFEEQFKDIQSKIPKELVREYETPQGGKVREVGPLVYGYSMTIGPDGKQKVREF
                     GNIRSPFRLGATGITSGAEPIITDEREPLADVITSDNEVKVVVEIPGVNKENIKINAY
                     DNSLEIMTNDPQKKYHRVIDLPQEADIETVKSTYKN"
     gene            990..1316
                     /locus_tag="VHF08_02550"
     CDS             990..1316
                     /locus_tag="VHF08_02550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067559.1"
                     /translation="MKDTSDIKYAKHNRVRLKEGKRDKITKMFIEFFNEVERKTKGME
                     GYIIMDNIKDLNESIVITFWNSKQAMDTYYQPHNKDLSDLIEKAKPSFEQMPERSSYS
                     ISCLKM"
BASE COUNT          510 a          248 c          231 g          565 t
ORIGIN      
        1 attcttatat gtagatttga ctgtttcaat atctgcttct tgaggtaaat caataactct
       61 atgatatttt ttctgtggat cattagtcat tatttctagt gagttgtcat aggcatttat
      121 cttgatgttc tctttattaa cacctggtat ttcaactaca actttaactt cattatcgga
      181 tgtgattaca tctgctaaag gttctctttc gtctgtaatg ataggttcag cgccggaggt
      241 tattcctgtt gctcctaacc gaaaaggtga tctaatattt ccaaattctc gcactttttg
      301 cttgccatca ggtccaatag tcatcgaata accatatact aatggtccta cttcacgtac
      361 cttgccacct tgcggagttt catactctcg gactagttcc tttggtattt ttgattgtat
      421 atctttgaat tgttcttcaa acattctttg catttctctt ctcatttcat ctaattgtct
      481 tggcatatca ccgaaccatc ctcctcttcc tattgatgat ggcattctac tactactgct
      541 aaagaatctt ctaaaccaat cttctggttc aataccccaa aagctcattt gttttcacct
      601 tgaattatga tggtttatat tataaataaa tcattataga aaatttctat agaattggat
      661 tattagtgtt tatcaatgat attattataa tattattata gaatttttaa tttagataac
      721 ttatttagga aaaatatttc atatattgat atgcgtattt agaagtttaa ctaaaatagc
      781 atattataag caagaaatga aggagttaag caagtaacag tactaatggt cccaagcttt
      841 ggaggatgat caacataaac ggcattttct tgctgattat aattctttat ttcttttgaa
      901 gccaggctta acataaactt tctatgattt aacttcttac gatgtcacaa aagtgaatgc
      961 ttaagaatta ctctaaaata tctgtcatca tgaaggatac atcagacata aagtatgcca
     1021 aacacaatag agttcgctta aaagaaggta aaagggataa aattacaaaa atgtttatag
     1081 aattttttaa tgaggtagaa agaaaaacaa agggtatgga aggatatata ataatggata
     1141 acattaaaga tttgaacgaa tcaattgtta taactttttg gaattcaaag caggctatgg
     1201 atacatatta ccagcctcac aataaagatc tttctgactt gatagaaaaa gcaaaaccat
     1261 catttgaaca aatgccagaa aggagtagct attccatatc ttgtttaaag atgtagcttt
     1321 attatcggcg taactatcaa taatgtaaaa attatcagaa tagctgagct attattgatg
     1381 ctccacagtt taccagaatt gctgacgata ataataatta gtttttcctt cgctggacta
     1441 ttatcttcta taatctccat aaaataacct agtacgtatt ttcaagttcc ttctatgtat
     1501 tctattcata gctaagaata attttcgaaa tggtgtgaaa gaaattttat taag
//
LOCUS       DATAAS010000157         7289 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_144861, whole genome shotgun sequence.
ACCESSION   DATAAS010000157 DATAAS010000000
VERSION     DATAAS010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7289)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7289)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7289
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_144861"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(425..1063)
                     /locus_tag="VHF08_02555"
     CDS             complement(425..1063)
                     /locus_tag="VHF08_02555"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2067560.1"
                     /translation="MSQSAKEWSNAQNALAYLNIADNLPHRTEGESVLIDHIPKDANR
                     ILDLGTGDGRLIKLIKKDRPDIKEAVALDVSPTMLKAARDHFANDSKVKVIEHDLSLP
                     LPDLDYFDAVVSSFAIHHLKHERKRSLYEEIYDILNPTGVFCNLEHVASPSVELHVRF
                     LNAIGYTPQKEDRANRLLPMETQLGWLRDIAFVDVDCYWKWLEMALLIGYKA"
     gene            1401..1919
                     /locus_tag="VHF08_02560"
     CDS             1401..1919
                     /locus_tag="VHF08_02560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067561.1"
                     /translation="MSSCAIILAVFLLLTMPVIFNYSIHTAFGQELEVGAEFIRQENE
                     FLNDDVIYNMVTFNFTTNDTRICPSNICTYIFEDGQLSPDIVTGEYAVDGELNVDVNG
                     TSESTTYDIRMDLEVNGIPEEGNRTANINAGTIGIGGNALFNPIYKYQVINGTLDFGE
                     STLLHLRATKIQ"
     gene            complement(1951..3213)
                     /gene="sat"
                     /locus_tag="VHF08_02565"
     CDS             complement(1951..3213)
                     /gene="sat"
                     /locus_tag="VHF08_02565"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEX2067562.1"
                     /translation="MEKIHELVDGGGKMRHKKNAVCIGIPLRNTRSRELLLGHIRSNS
                     IPQPHGGKLINRFTTSKKNIDGMFSINVSYDLRNDIENIADGVLSPLEGFIGHDDFQS
                     IIKSGHLKNGLAWTIPIILDVDEQTAIKMKDAREVCLSSNNENFGILHVEDAYSFDKL
                     AAAKAIYQTDDLEHPGVSNMIRMKDLSIEGKVDVIKRIEKSPLRKYRMSPSETRSQIQ
                     KSGWKTVVGFQTRNIPHIAHEMLQKAALNIYDGLFLNPLIGKKKVGDFKDEIILGAYE
                     TLIENYYPKNRAMFVTLHTEMRYAGPKEAIHHAIMRKNFGCSHFIVGRDHAGVGNYYP
                     PFAAHDIFKDYEDLGIEPLFFPAFYYCKKCLSYANERNCPHTPEFREELSGTKMRKMV
                     SSYETPAEHLMRPEIAKLIMSSIDPFVK"
     gene            complement(3116..3877)
                     /locus_tag="VHF08_02570"
     CDS             complement(3116..3877)
                     /locus_tag="VHF08_02570"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004604 - phosphoadenylyl-sulfate
                     reductase (thioredoxin) activity [Evidence IEA];
                     GO_process: GO:0019379 - sulfate assimilation,
                     phosphoadenylyl sulfate reduction by
                     phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoadenylyl-sulfate reductase"
                     /protein_id="HEX2067563.1"
                     /translation="MSKTNVDMLKPTELQIKKIAEEMEDQSAMEVLKWAINAYAPKIA
                     LASSFGAEDVILIDMMVKINKEKAKIFTLDTGRLNQETYDVMDAIRKKYGIQIEVYFP
                     EQRETEEMVKIKGMNLMYESVENRKLCCEIRKVHPLNRALSNLDAWITGLRREQAITR
                     ANIYKLEIDSSHGNIVKINPLADWTNEMIWDYIHKNNVPYNKLHDSGYPSIGCEPCTR
                     AVHRGEDPRAGRWWWENATQKECGLHWDPTKKYQK"
     gene            4130..5539
                     /locus_tag="VHF08_02575"
     CDS             4130..5539
                     /locus_tag="VHF08_02575"
                     /inference="COORDINATES: protein motif:HMM:NF038049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SelD-related putative sulfur metabolism protein"
                     /protein_id="HEX2067564.1"
                     /translation="MSEDFWELIEEYRQLGFDPLRWIPTCSNEIDTYLFQASLKNIKR
                     SNIKITPNWFDAFPYAEGKGIDLTRRIYSFDNPEIEKEVEIKRALSIFRIHINTGENS
                     TLLSEAIQKFMKSFHSKVLVKKVATSLTAYAEAQFALLDYIELHRGDKVGYISASNSV
                     THITDPTHSPDSDIHSNIALTGAMEYLNLLGCTSGFKLFPVYDAPNETILDKIRENLD
                     GFTSRYNLAMEDYSSLKIGKLFFGATAFANTLKELPIRYDQSEEGMQIIISNKLGSMT
                     AASLYMLTEMDHNNITKFEQNDIGLDGLSAAKDEAMKRLTEPHFALGKIISKYCPDFE
                     TEFDKHTHITAVHPVTTDGIFAVGRLAELTNSHIVINELPMKNEEIAKFATREFLIDN
                     ATVSTNGCHLIVATNDVANSVLEELRRHNFEPTVMGFIAKKGEPVVTIEKEISKYVAS
                     KAKLARLNSLVQAGSQQHK"
     gene            6613..7173
                     /locus_tag="VHF08_02580"
     CDS             6613..7173
                     /locus_tag="VHF08_02580"
                     /inference="COORDINATES: protein motif:HMM:NF039195.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PsbP-related protein"
                     /protein_id="HEX2067565.1"
                     /translation="MRDKLAKLLLLFSLLLTIMITSLLLSISSTDQQITTTLAQTSEK
                     MVIYDDPAFGIRIQYPSDWGRLDPSFLQDSADIDFYPLNDTSLAKNLKVQVKNLPFHN
                     MTLEEYTNSQINLLEENLLESSAATLAGIPGYKIVFTNIEGLKTMQVWTIKDDKAYII
                     TYVAQEEDYEKELQIAQKMIDSFEIK"
BASE COUNT         2356 a         1240 c         1159 g         2534 t
ORIGIN      
        1 taatttataa tgtatatatt ttattatctg taattattgc ttacaattat tttgaaatct
       61 attatatatg attagtagtt ttacaggcaa ttatggcaac agatttgttt tgtgaaaaga
      121 taaagatgtt tttgttcgta ctatcaaaat gatagttgtt cctgtctatg ctattgtata
      181 tagttttttt aatttttagt gtaccttttc taaaaaaatt cggcaagata caagaataaa
      241 tcaaactgac aagaacaaaa gcaactaagc ttctagattc atttataata ttagtatatt
      301 ccaaatgcat taaacatatg aaatcaatta tttctattct gcttaatttt atgcggtgag
      361 ataaacttta tgtggcatct tcagctactg taatataaga tctaataata ttctctctcc
      421 tatgctatgc tttatatcct atcagcaaag ccatttcaag ccatttccaa taacaatcta
      481 catccacaaa agctatatct ctaagccatc ctagttgtgt ttccataggc agtagtctat
      541 tagctctatc ctctttctgc ggagtataac caatagcatt tagaaagcga acatgaagtt
      601 ctacagaggg cgatgctaca tgttcaagat tacaaaaaac tcctgttgga ttaagtatat
      661 cataaatttc ctcataaagt gaacgcttgc gctcatgttt taagtgatga atggcaaaac
      721 ttgatacaac agcatcaaaa tagtctagat ccggtaatgg caagctaaga tcgtgttcta
      781 taaccttaac ctttgaatca ttagcaaagt gatctcttgc agcttttagc atagttggag
      841 atacatctaa ggctactgct tcttttatat ctggtctatc tttctttatt aatttaatta
      901 gtcgtccatc tcctgtacca aggtctagta ttcgatttgc atctttagga atatgatcaa
      961 ttaaaacaga ttcaccttct gtacggtgtg gaagattatc agctatattc aaatatgcca
     1021 aagcattctg agcattagac cattcctttg cagattgact cattgttatt atatacaaat
     1081 aacaataact taatttgttg ttcaaatact tttcttactt taatatcctt gtccttcttc
     1141 ttctcttctt catactattg tttctttctt ctcagaaagt attttaaaaa cttgaaactc
     1201 agactttaat atcatccata tccatatact gtcagatatt tcttgaaatc gttttttgtc
     1261 tgtagaagta catggcaatt gaattttttc ttattcgtgt atacgatcag atttaatggc
     1321 atagttaagc aatgcttttg ataatatgga tacattttgt aaatagtagg tatttatatt
     1381 aataattttt taattataac atgtcaagtt gtgcgatcat attagctgta tttttacttt
     1441 taactatgcc tgttatcttc aattactcta tacatacggc ttttggacaa gaattagagg
     1501 ttggagcaga attcatacgt caagaaaatg aatttctgaa tgatgatgta atttataata
     1561 tggttacatt taattttact acaaatgata ctcgcatatg tccttcaaat atatgtactt
     1621 atatttttga ggatggacaa ctttctccag acattgttac cggagaatat gcagttgatg
     1681 gtgagttaaa tgtagatgta aatggaactt ctgaatccac tacttatgac ataagaatgg
     1741 atttagaagt taatggaata cctgaagaag gaaatagaac tgcaaatatt aatgctggta
     1801 ccataggtat agggggaaac gccttgttta atcctattta taaatatcag gttatcaatg
     1861 gtactttgga ttttggagag tctactttat tacatttacg tgcaacaaaa atacaataaa
     1921 taattacctt attcatatag aattagtata ttacttaaca aatggatcaa tagatgacat
     1981 aatcaatttt gcaatttctg gtctcatcaa gtgttcagct ggagtctcat aggagctaac
     2041 catttttctc atcttggtgc cactcagttc ttctctaaat tctggtgtat gcggacagtt
     2101 tctttcattt gcgtagctca agcatttctt gcagtagtaa aatgcaggaa agaatagtgg
     2161 ttctattcca agatcctcat aatctttaaa gatatcatgg gctgcaaaag gaggataata
     2221 gttacctact cctgcatgat ctcttccaac tataaagtgt gaacatccaa aattttttct
     2281 cataattgca tgatgaattg cctctttcgg cccagcgtat ctcatttctg tatgaagagt
     2341 tacaaacatg gctctgttct tgggatagta attttctatc aatgtctcat atgctccaag
     2401 aattatttca tccttaaaat caccaacctt ttttttgccg attaatggat ttagaaataa
     2461 tccatcataa atattcaagg ctgccttctg caacatttca tgagcaatat gtggaatatt
     2521 tcttgtctga aatcctacta cagttttcca tccactcttc tgaatttgag acctagtttc
     2581 agagggactc attctatatt ttctcaaagg cgatttttca attctcttaa taacatcaac
     2641 cttaccttca atagatagat ctttcattct tatcatgttt gaaactccag gatgttctag
     2701 atcatctgtc tgatagattg cttttgctgc agcaagttta tcaaatgaat aagcatcctc
     2761 aacatgaaga attccaaaat tttcattatt actactcaaa caaacttccc tagcatcctt
     2821 catctttatc gccgtttgct cgtctacgtc caagattata gggatagtcc atgctaaacc
     2881 attcttcaaa tgaccagatt ttataatgct ttggaaatca tcatgaccta taaatccctc
     2941 taggggactt aagacaccat cggcaatatt ttcaatgtca tttcgaaggt cataactgac
     3001 attaattgaa aacatcccgt caatattttt tttagaagta gtgaatctgt ttatcaattt
     3061 gcctccatgg ggttgtggta tactgttgct acgtatatga cccaataata attccctact
     3121 tctggtattt cttagtggga tcccaatgca gaccgcattc tttttgtgtc gcattttccc
     3181 accaccatct accagctcgt ggatcttctc cacgatgaac agctctcgta catggctcac
     3241 agcctatgct tggatatcca ctatcatgta acttattata tggaacatta tttttatgaa
     3301 tataatccca gatcatttca ttagtccagt ctgctaacgg attaatctta acaatattgc
     3361 cgtgtgaaga atcaatctca agtttataga tattagccct ggttattgct tgctctcttc
     3421 tgaggccagt aatccatgca tcaagattac ttaacgctct attaagtgga tgtacttttc
     3481 taatttcgca gcaaagcttt ctattttcaa cactttcata catcaaattc atccctttta
     3541 ttttgaccat ttcttcggtt tctctctgtt ctggaaaata gacttcaatt tgtatgccat
     3601 atttttttcg gatcgcatcc atcacatcat aagtttcttg gttgagtcga cctgtatcca
     3661 atgtgaaaat tttagctttt tctttgttga tttttaccat catatctata agaattacat
     3721 cttcagcacc aaaacttgat gccaaagcta tcttcggtgc ataagcatta atagcccatt
     3781 ttagaacctc cattgcagat tggtcttcca tttcctctgc aatttttttg atctgcaatt
     3841 cggttggctt taacatatca acatttgttt tagacatatt aaatattcac tctaataggg
     3901 gttataatca ttgtcattat attactggat ataatttcca tagttagcta gtcatggctt
     3961 ttgatttaga tgtattctag agcattacaa gtggacagaa ctatttaaaa gacgatgtat
     4021 tccaaaattt attacgttat cagacaaaaa gttgtgttta ttaaatagtg ttttcatatg
     4081 tataatacta attaaactag gattgtgatt gttaggggag gtgttatgat tgtcagagga
     4141 tttttgggaa cttatcgagg aatatagaca gctaggtttt gatcccctac gatggattcc
     4201 tacttgctca aatgaaatag atacctacct cttccaagcc tcattgaaga atatcaagag
     4261 aagtaacata aagataacac ccaattggtt tgatgctttt ccttatgcag aaggcaaggg
     4321 tattgacctt actagaagaa tatatagttt tgataaccca gaaatcgaaa aagaagttga
     4381 aatcaaacgg gcactttcta tatttcgaat tcacattaat actggtgaaa attcaacatt
     4441 gttatcggaa gcaattcaga aatttatgaa aagctttcat tcaaaagtcc tagtaaaaaa
     4501 ggtagctact tctttaacag catatgcaga agctcagttt gcgcttctgg actacataga
     4561 attacataga ggggacaagg taggatatat atctgctagt aattctgtta cacacataac
     4621 tgatccaact catagcccag attctgatat ccatagtaac atcgcattga caggcgcaat
     4681 ggaatatcta aatcttttag gatgtacctc aggtttcaaa ctatttcctg tatatgatgc
     4741 tccaaatgaa acaattttgg ataaaatcag ggaaaacctt gatggattta cttctcgcta
     4801 taacttagcc atggaagatt atagctccct taagataggc aagctattct tcggtgcgac
     4861 tgcgtttgca aatacgctta aagaattacc tatacgatat gaccaatcag aagaaggaat
     4921 gcaaataatt atttctaata aattaggttc aatgacagct gcaagtcttt acatgttgac
     4981 tgaaatggat cataacaata taactaaatt tgagcagaat gatattggtt tagacggtct
     5041 ttctgctgca aaagatgagg caatgaaacg cctaactgaa cctcattttg ctcttggtaa
     5101 aataatttca aaatactgtc cagattttga aacagagttt gataaacata cccacataac
     5161 tgctgtccac cctgttacaa cagatggcat atttgcggtg ggaagacttg cagaattgac
     5221 aaattctcat attgtaatta acgaacttcc aatgaagaac gaagagattg ccaagtttgc
     5281 aacaagagaa tttttgattg ataatgcaac tgtctcgaca aatggatgtc acctgatcgt
     5341 tgcaacaaat gacgttgcaa attccgttct agaagagtta cggaggcata atttcgaacc
     5401 aacagtgatg gggtttatag cgaagaaagg agaacctgtt gtaacaattg aaaaggagat
     5461 cagcaaatat gtagcttcca aagcgaaact tgctagatta aattctctag tacaagcagg
     5521 aagtcagcaa cataaatgac aaaatccttc aattattcta tttttttatt tcttcaatga
     5581 tgagttgata tatctctgcc gtaataatca gcactttatt ttcataatta tcgataaagc
     5641 cacctttagt agatgtttat ttattcttag aagttgtatt agtatgtaaa ttttgttatg
     5701 tcgctatact ctctaacctt tcattcatag aatcttcttt ttctcaaaaa acgtttaagt
     5761 gtatatttag ctttgaacat ttcctatatt tgatatctta ttagcaaatc tgttcatctt
     5821 cttgatcatg agatctatcg aaagtctttg cctaatgtgc tctcttatct tctataacta
     5881 gggcatcaat tattctacta aatcttggaa aaagacttga aaatctatta agagttcaac
     5941 aagagtcaat gatactagga tcatcatttg tagttcctaa gcattttaca ttatttacag
     6001 atgtaagaga aaattgtgtc tatttgtttc ctagtcaata gatctataaa caattttgca
     6061 aatgccatag caactttcag actgttattt ctatggtctt ttctcagatg catcagtgat
     6121 tttcatataa tgataaaaat gaattattat tataattatc atttatttca gcattgatag
     6181 agtctggaat tatttgcatt ttattgatat aatagtacta agctttgttg gcaattctat
     6241 gacggtcttt actaatatcg gtaattatgt tgtatagtag tattgcgtat tgcgtaatca
     6301 agtatttgaa ctcatgtagt taacagctct aggtaggtgt ggaacaaatt tgacatgatt
     6361 aggatccaga aatacgacta gcttctactc aaaatcttta actaacaaat accattcatc
     6421 tattgagaat aatagtttgg ccttttagga gatatattac tctccctgtc tcatcagcat
     6481 tttaattctc aaaagttata gtaaaagtga tgtaagtgat gattatatgg ggaatagctt
     6541 atttccaaat gaatatttta gtaatgtatc tccaacaaac attaagatac tcatataata
     6601 atcagttatt gtatgagaga caaattggca aaacttcttc ttctatttag tttgctacta
     6661 acaatcatga taacttcatt attgttgtcg atctcatcta cagatcaaca aataacaaca
     6721 acattagcac aaacaagcga aaaaatggta atttatgatg atcctgcctt tggtataaga
     6781 attcaatatc cttcagattg gggaagatta gatccttctt ttctacaaga ttctgctgat
     6841 attgattttt atcctcttaa cgatacgtca ctagcaaaga accttaaggt acaagtgaag
     6901 aatctacctt ttcacaatat gacattggaa gagtatacaa atagtcaaat caatctcctc
     6961 gaagaaaatc ttctagagtc aagcgcagct acacttgcag gtataccagg atataaaata
     7021 gtatttacta atatagaagg actaaagaca atgcaagtct ggacaataaa agacgataaa
     7081 gcgtatatca ttacatatgt tgcacaagaa gaagactacg aaaaggagtt gcagattgca
     7141 cagaagatga ttgattcatt tgaaataaaa tgattgaata tttaacagaa ttaattccaa
     7201 agcacaagtc acttaataat aatgaagtat taaggaatcg aaacacgaaa ggagaaggag
     7261 aaggaggagg aggaggaggt agagcaaat
//
LOCUS       DATAAS010000158         1622 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5005597, whole genome shotgun sequence.
ACCESSION   DATAAS010000158 DATAAS010000000
VERSION     DATAAS010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5005597"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(638..1171)
                     /locus_tag="VHF08_02585"
     CDS             complement(638..1171)
                     /locus_tag="VHF08_02585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067566.1"
                     /translation="MEDSNKIRTETITFRLPSSLIDELRRDAELEDVSLNALVTRIFS
                     NHIQWERYERKVGLLPMTKPFLKEVLNQMTDEQIINLAYKIEKESFKGILRFMKENIE
                     LDDFMRFLRTWLTASWMQHNIVIKNDSYRFNIQHDLGIKWSLYVKTLVSELCQDVLGR
                     AVDIKINDNLISLVFTE"
     gene            1402..>1622
                     /locus_tag="VHF08_02590"
     CDS             1402..>1622
                     /locus_tag="VHF08_02590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067567.1"
                     /translation="MNIGTSALYYTATATTALAGILHLILVPDIIGRNLNSGLFFIVA
                     GIAQIFWVIPMLKRWGRIWYYIGIAGTIV"
BASE COUNT          527 a          286 c          235 g          574 t
ORIGIN      
        1 gtctttattt gcttgctttt ttagcttggt aaaatgtctg cctttcattg taggcaacat
       61 aaaaattttc tccttttaat gctattgaac tttcctcaag acctgccaat ccctttttta
      121 aaaatgatat aaaacaaaag cattttcttt ttagaatgaa caacttgtta taaattaaaa
      181 tataattaac aatgattgaa atttttatta tcaatattta aaaccaaaaa attgggacat
      241 ttcaggatag gaaaacgtat taattgatat tactaaaatt tgtataatac gtttaaatag
      301 aattaattat tttattttgg gttctgatta agtaaagagt ttgtaacttt catctaaaac
      361 tgatatcctt ctcatttatg gcattgaaca tattattata ataaacgata agatgtactt
      421 attcaaaacg agggtatata ctgcaccacc acaattatca gcctattttc tgctttgacc
      481 aacttgacga cgaatctgac ggcctagatg acgaacttga cgttcactaa aatgacattc
      541 cgaattttca ggcatttaaa aaggatttct tttactattt aaattaccca tatagttatt
      601 gttatctgat gatgctgcca gattcgtatg gcggttacta ctctgtaaat accaaggata
      661 tcaggttatc atttatctta atatcaactg ctctaccaag gacatcttga cataattctg
      721 atactaaagt cttgacatag agcgaccact tgatccctaa atcatgttgt atgttgaaac
      781 gatatgaatc atttttaata acaatattgt gttgcatcca agatgcagtc aaccaagtcc
      841 gtaagaacct cataaaatca tctaattcta tattttcctt cataaatctc aatatacctt
      901 tgaagctttc tttctctatt ttatacgcca gattaataat ttgttcatca gtcatctgat
      961 tcaaaacctc ttttaaaaat ggctttgtca taggtagaag ccctaccttt ctctcgtatc
     1021 tttcccactg tatgtgattt gaaaagattc gagttaccaa tgcgttcaag ctaacatctt
     1081 ctaactctgc gtctcttctt aattcatcta taagagaaga aggcaatcta aatgtaatag
     1141 tttcagttcg tatcttgttg ctatcttcca aacctccttt tatactaata ctgcctcatc
     1201 actcatgcac attaggtaaa tgactatcac tcaaactaaa agatttctat tattaccctc
     1261 attgttaaat ccacctatgt tcgctagaca caacacattg caatacaaag taccctatat
     1321 ctttagttgg agcgtctgcc gttcaaagat gaaaagagca ggataaggac tgaataacga
     1381 tgggggcttg atgaaattta tatgaatata ggtactagtg cattatatta tactgcaact
     1441 gctactactg ctctagctgg aatattgcat cttatattgg taccagacat aataggaaga
     1501 aatctaaatt ctggattatt cttcatagtt gctggtatag ctcaaatatt ttgggttata
     1561 cccatgctaa aacgatgggg aagaatctgg tattatattg gaatagcagg tactatagtg
     1621 tt
//
LOCUS       DATAAS010000159         2319 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1278164, whole genome shotgun sequence.
ACCESSION   DATAAS010000159 DATAAS010000000
VERSION     DATAAS010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2319)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2319)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2319
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1278164"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..617
                     /locus_tag="VHF08_02595"
     CDS             <1..617
                     /locus_tag="VHF08_02595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="methylhydantoinase"
                     /protein_id="HEX2067568.1"
                     /translation="NSPNPNDASSLMEEVKQIALNRGATPESLTLQSEYISERSLLRA
                     TAIGNVSLDIGTVDAKKINYEEARKLAYEFYGNKERVHSIHNMENYHVFACEIYKRKL
                     FLKSRKQSVLVLDKYGRVRLSIENAVIFNGSPKQVADKIDLLLLRSNRNPTSNDLAPQ
                     VHILDGVKIVDFSSLIAPEQVSRAVRYELEKVSNQHVTAIIKLL"
     gene            882..1784
                     /locus_tag="VHF08_02600"
     CDS             882..1784
                     /locus_tag="VHF08_02600"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0002189 - ribose phosphate
                     diphosphokinase complex [Evidence IEA];
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016301 - kinase activity [Evidence IEA];
                     GO_process: GO:0016310 - phosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEX2067569.1"
                     /translation="MQKELSVIAGPSSPDLAAKIAQDLGAELIPVDVRIFTDSESKIR
                     MGNVKKKNCVIVQSTYPPTDRHLLQTLMMIKKCTDDLASDICTVIPYMAYARQDRAFQ
                     DGEVVSIELIAKLLEAAGNKRLITIDIHSALALSYFRIEAQNISSIPLLANHAANNMK
                     LNRTVVVSPDAGGVKRAYEFSKILGADILALKKCRDRNSGEVFIDDKLECSVADRDII
                     LVDDIITTGSSIVKACQVLKKNKADKIYTMCVHALLVNNAAEKIRAAGVQEIISTNSI
                     PSRYAKVDLSNIVSASLRSLLHTQ"
     gene            complement(2071..>2319)
                     /locus_tag="VHF08_02605"
     CDS             complement(2071..>2319)
                     /locus_tag="VHF08_02605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067570.1"
                     /translation="VLCYLKIIILIIVLDILLLSSLSPLNGSLLLRSNYSLECRPLSI
                     ETSIIFFTFVCIGFIAFYYVIMSECKKFLLRIILLLEL"
BASE COUNT          842 a          375 c          382 g          720 t
ORIGIN      
        1 tcaatagtcc taatcctaat gatgcttctt cattaatgga agaggtgaaa caaattgctc
       61 tgaaccgtgg tgctactcca gaatcactta cccttcaatc tgaatacatt agcgagagat
      121 cattacttcg tgcaacagca ataggtaacg ttagcctaga tataggcact gtagacgcaa
      181 agaaaatcaa ttatgaagaa gcaagaaagc tggcatatga attctatgga aataaagaaa
      241 gagtccattc tatccataac atggaaaact accatgtatt tgcatgtgaa atatacaaaa
      301 gaaaattgtt cctaaaatca agaaaacagt cagtattagt actggacaag tatggccgtg
      361 taagactatc tattgaaaat gctgtaatat ttaatggaag tcctaagcaa gttgcagata
      421 aaatcgatct cttacttcta cgttcaaaca gaaatccaac atctaatgac cttgctccac
      481 aggtgcacat tcttgatggc gtgaaaattg tagacttttc tagtctaatt gcgcctgaac
      541 aagtttcaag ggccgtcaga tacgaattag aaaaagttag caatcagcat gttacagcca
      601 ttatcaaatt actataatca ataatactct taaattgtat aaaactaaaa cacattatat
      661 tcttattttt tgtctttaga attcacatat taaggtcttt tacatacata tacctataaa
      721 acggtattta atgtgagaaa atcgttagct aacagttgat attgaggata gatatattct
      781 ttagcaatat tataagatac agctggacat attcgttatc tatttgataa taaatattaa
      841 catttttaag aatgagattg ttccatcaat ctgttcatcc cttgcaaaag gaactctcgg
      901 taatagctgg gccatcctct ccagatcttg ctgcaaaaat tgctcaagat ttgggggcag
      961 aattgatccc cgtagatgtt cggatattta cagatagcga aagcaaaata agaatgggca
     1021 acgttaaaaa aaaaaattgt gttattgttc aatcgacata tcctcccacc gatcgacatc
     1081 ttttgcaaac actaatgatg atcaaaaaat gtactgacga cctagcatca gatatttgta
     1141 ctgtcattcc atatatggca tatgcacgcc aggatagggc atttcaagat ggagaagttg
     1201 ttagcataga attaattgca aaactactag aagctgctgg gaataaacga ttgataacta
     1261 tagacattca tagtgcacta gcattatcat attttagaat tgaagctcaa aatatttcgt
     1321 caattcctct tttagcaaat catgccgcta ataatatgaa acttaataga accgttgttg
     1381 tttcgccaga tgcaggagga gtaaaaagag catatgaatt ttcaaaaatt ttgggtgctg
     1441 acattttagc tctaaaaaaa tgtcgcgatc gtaactctgg agaggttttt attgatgaca
     1501 aattagaatg cagtgttgca gatagagaca ttattcttgt tgatgatata ataactactg
     1561 gctcgagcat agtgaaagca tgtcaagttt taaagaagaa taaagctgat aaaatatata
     1621 caatgtgtgt tcatgcctta ttggttaaca atgctgcaga aaagataaga gcagctggtg
     1681 tacaagaaat aatttctaca aattcaatac ctagtcgcta cgccaaagtt gacctaagta
     1741 atatcgtatc agcaagtctt cgttccctac ttcacacaca ataaaatttt ctgtttaaca
     1801 attgtcttgg gtttatcaaa gattattgta ttatattgtt cttctcattc cattactgta
     1861 gtaatgagat aatcagtatt acagaaagat tacaacttta atattttgct ttcaggacaa
     1921 aaacatttct tcctaacgaa ttattaataa tatgtccgtc tagatatgta ggatatgaaa
     1981 tcgtactaaa gattttagat aaaagcaact ctttattctc tcatatttat attaattgat
     2041 tataatatta tcattgacat tagtttcata ctagagttct agcaacaaaa taattcgcaa
     2101 tagaaatttt ttacattctg acatgataac gtaataaaat gcaataaatc ctatgcaaac
     2161 aaaagtaaag aagatgatag aagtttcaat actcaaaggt ctacattcta atgaatagtt
     2221 cgatctcaac agcaatgacc catttagtgg cgatagacta ctaaggagga gaatatcaag
     2281 aacaattatt agtataataa ttttaagata acacagaac
//
LOCUS       DATAAS010000160         1533 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3386836, whole genome shotgun sequence.
ACCESSION   DATAAS010000160 DATAAS010000000
VERSION     DATAAS010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1533
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3386836"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(588..1019)
                     /locus_tag="VHF08_02610"
     CDS             complement(588..1019)
                     /locus_tag="VHF08_02610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067571.1"
                     /translation="MGTKSLVLSITSGLFLTYVFCSNTVYAELQDIGVKITSPSTGQE
                     IPVGELTIFGISTDNSTTDCQVHVDIDDTKPFQKATATGPMIKDDYSTWIFTYTQDYR
                     LIREGENELTARISCLNGPVNLSKYHTVNIIGVNKSNNNQE"
BASE COUNT          525 a          246 c          231 g          531 t
ORIGIN      
        1 cgatctatca taaatgtatt catagaactt atagcctgat atttgaaaat tatctatatc
       61 aaacaaattt agctttagga ataacaagaa aagactattc atacattatg attatcaata
      121 cggcttagaa cttatgtcac gtccttatat aaggcaatcc tgattcttat tgctcatcat
      181 caagctgacg gtgcaaagcc atcgtagcaa gatatctggt atattcttct tttgaattat
      241 ctgtgttaaa ttagatagcc ttcacaatgt tttataagag catgttttcc aaattttttc
      301 tcagttaact ttttgtaaac tttatttctt tcttttctag ttcgccacag actgattata
      361 gattacagat tactaacgtt gaagcctacc aaccataatg ttaactgttc tatcttagac
      421 acgtaatatc tccaaatatt acgcaagatc aaatggcaga atgtaattac aaaaagatat
      481 cgacgagtca ttttattcct aatatttatt aaccctcgtg ttgttctaat ttaatcgttt
      541 aaacgcttaa ggatgtaagg gataaaatta aatcatactg ccatctatta ttcctgatta
      601 ttattgctct tatttactcc tataatattt acagtatgat atttcgataa attaacggga
      661 ccattaagac aagaaattct ggcggttagt tcattttcac cttctctaat aagacgataa
      721 tcttgcgtat atgtaaatat ccatgttgaa taatcatctt ttatcatagg gccagttgct
      781 gttgctttct ggaatggctt tgtgtcgtct atatctacat gaacctgaca atcagtagtt
      841 gaattatctg tcgatattcc aaatatagtt agttcaccta ccggaatttc ttgaccagta
      901 ctaggggatg taatttttac acctatatct tgtaattcag catatacggt attagagcaa
      961 aaaacatagg taagaaataa tccagaggta atagatagca ccaaagactt tgtccccata
     1021 ttagattgtt cccgttatca attcattaat ataatattat gcaagaggaa aaatattgac
     1081 aaagaaattg gatattattg tcccaggaga atatttaata caatgtgata ggagaacata
     1141 tccagccaaa atttgagatt ttgtatttat tccaaaagga attccacata aacccaattc
     1201 aaagggtgga aaagttcttg taatatcacc tgaaggattt agaaaaacac tttaagttat
     1261 tgatattctt cgaattggtc atctcagatg ggaattagaa taggaaactg cgtgccgtta
     1321 tggtcaagaa tcccttgaaa tcgtaagcaa tagcgacaat aaaattctag tttgatattt
     1381 gaaatacatt gcaataatca aaatcataaa gctaactttt atggcatatt actgtgtgat
     1441 aaaaacaatt gttatttttt tatgaagcaa ttgttcgata gttttagata caagcaaaca
     1501 aaacttttca aattggctgc aacaatctag cta
//
LOCUS       DATAAS010000161         1561 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4470462, whole genome shotgun sequence.
ACCESSION   DATAAS010000161 DATAAS010000000
VERSION     DATAAS010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1561
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4470462"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..490)
                     /locus_tag="VHF08_02615"
     CDS             complement(<1..490)
                     /locus_tag="VHF08_02615"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEX2067572.1"
                     /translation="MISILYTNIKNRTGLPLSILHPTSYTNIIMTTFGFLTTLALVII
                     FVSQIDTALAQTTPIQNTNANVTNSNNTLFVSGTAFTKVKPDRVVISIGIETTNKTAK
                     AALDANSESMNKIISALRNSGVKENETSTSSFTISPNYNYTESGTRLNITGFTVTNSV
                     LID"
     gene            complement(777..1244)
                     /locus_tag="VHF08_02620"
     CDS             complement(777..1244)
                     /locus_tag="VHF08_02620"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2067573.1"
                     /translation="MANIQYETDINAPVEKVYEYYTNPDNIKEAWPRDIVKESESVSG
                     SKSEEGSEMKVKGQYMGKEEEMRLEVAEKEQNRRLVTRQIEGPFKKWESIQEFEGREG
                     GNSTHIRHSIDYELPTTGKIANMLSGSQADNKIRTGLEQAAQTVKQKLESGQA"
BASE COUNT          459 a          259 c          227 g          616 t
ORIGIN      
        1 tatcaatcag tacagaattg gttacagtaa atcctgttat attcagtcta gttcctgatt
       61 ctgtataatt gtagttaggt gatatagtaa atgaagatgt actagtttca ttttctttta
      121 cacctgaatt tcttaatgca gaaataatct tattcattga ttcagaattt gcatctagag
      181 ctgcttttgc tgttttgttt gttgtttcaa tccctattga aatgactact ctatcaggtt
      241 ttacttttgt aaatgcagtt ccagaaacaa ataatgtgtt attgctattt gtaacattag
      301 cgtttgtatt ttgaattgga gtagtctgag ccaatgcagt atcgatttgt gatacaaaaa
      361 taatgaccag ggccaatgta gtcaggaagc caaaggtagt cataataata tttgtataag
      421 aagttggatg aagaatagat aatggcagtc ctgttctatt tttaatattt gtgtacagaa
      481 tcgatatcat ataggtttgt ctaattattt ttgcatctat atatacatat agatttctat
      541 aatgacttga tacactaaaa gaactgatac ttattgcagt caatacttat gaattgaatt
      601 tgagaaaatt taacaaactc tgttctatag taagataaga attctaattt cgagtgctag
      661 cacaatagat acccccgaac tagctaacta gacgaataca tacttccatc aaatattaca
      721 tagtgaaagg tatatctgca aaggaggaat ttttctctct atcatcctaa ttattattaa
      781 gcctgacctg attctagttt ttgctttact gtttgagcag cctgctctaa tcctgttctt
      841 attttattat ctgcttggct acctgaaagc atatttgcaa tttttccagt tgttggtagt
      901 tcataatcaa ttgaatgcct aatatgtgta ctatttcctc cctcacgtcc ttcaaattcc
      961 tgaatacttt cccatttctt aaatggtcct tctatttgcc ttgtaactag ccttctgttt
     1021 tgttctttct ctgctacttc aagtctcatt tcttcttctt tacccatgta ttgacctttt
     1081 actttcattt cagaaccttc ttcacttttt gaacctgaaa ctgattctga ttctttgact
     1141 atatcacgtg gccatgcttc tttgatattg tctggattag tgtaatattc gtatactttt
     1201 tcaactggtg catttatgtc tgtttcatat tgaatatttg ccataatcgc tttagtagat
     1261 tacatcgctt ttaaatactg taattatcac acacatacac aataatatac aaaatacata
     1321 ttgtgatagt tagtcatgtt gaattagata tgtgtgtata tgtataataa attcaaccta
     1381 ttctttgttt tattattaca agtgtgcact ttttagttgc aaaatagatc aaatattcct
     1441 atcttgcatt tcacaaaacc acatctttaa attaagctcg caatgggtct tactttcaat
     1501 tggtgattct ttaaaaaaaa attatcgtag ctttattcat tcttgactgc agaaaccgta
     1561 t
//
LOCUS       DATAAS010000162         2830 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1280965, whole genome shotgun sequence.
ACCESSION   DATAAS010000162 DATAAS010000000
VERSION     DATAAS010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2830
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1280965"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(386..1564)
                     /locus_tag="VHF08_02625"
     CDS             complement(386..1564)
                     /locus_tag="VHF08_02625"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX2067574.1"
                     /translation="MSDYYDVIIAGGSVSGLLAGREIAAKGLSVAILEEDAEIGTPEH
                     CGGLVSINGIQSLGIIPSSNAIENKIKYARIASSSKTFELNAEEQKVIVLDRRVFDKQ
                     IAFQTQRLGGNIRVRCSMRSISKTNDFGNNDNHHYYDIRTSEGNLKCNYFVDARGVTS
                     ILQRNREGVLQSAQYEVYASWIEHDTIEVKFDSERYPGFFAWIIPTGRGKAKVGVAGK
                     SINPANTLKSYMDSKGQSYSVIRKVYAPIWVRGPLETFVYERTLIIGDAAGQTKPTTA
                     GGIYTCGMGGIFAGRAIANAIQQNNDKLLYDYQKNWFSIFKEEFDKMIIARRLLERLD
                     NKAIDELFSTITQVETEQLSKTGDFDFHSSALAKMLGAKGAAKIIKTVLGNEIRRLLN
                     "
     gene            complement(1697..1948)
                     /locus_tag="VHF08_02630"
     CDS             complement(1697..1948)
                     /locus_tag="VHF08_02630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067575.1"
                     /translation="MSFRDIGVILNKAAEERTEGLEEEQGDAEKSQEQHQQQHLSLST
                     QPYKLFSDRKTPLQVDIALNIRESEATKVYREYWKLTPD"
     gene            2532..>2830
                     /locus_tag="VHF08_02635"
     CDS             2532..>2830
                     /locus_tag="VHF08_02635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067576.1"
                     /translation="MQFAFASVIEAIIRNPDKYNDILVCNTPLSSTSMPAQQLILSLH
                     IGSYKDMIRDEDNRLYDLLVKHFTNTIMDNAVGASSSNSSLSSTFPLSNQCDMDR"
BASE COUNT          851 a          509 c          417 g         1053 t
ORIGIN      
        1 aaacaaagag tgactttatg aatatatctc tgattgatga tcgaggtagt atcatcaatg
       61 aaatcagaag tgacaattat gtatttcata aaaggaaata atgaaaagat aaatacttga
      121 gattttcatc tgtcattgtt aattatgaac taatattgaa ccaatttaag tatattattt
      181 ttaagcggtt tcaaagaatt atacgaaata ttatttcaca ggctgaggcc tatgctgcct
      241 ttatcatctc ttctcattct attttttctt tattcttgtg ttattgtagt cgtcgtcatg
      301 accatcgatt gtcattcatc tttaacatga acacctttcg atatatcacg cgaccttcat
      361 ttacaattga aaagttatat cttgtttaat ttaacaatct cctaatctca ttacctaaga
      421 ctgtttttat tatttttgca gcacctttag ctcctaacat ttttgctaaa gctgatgaat
      481 gaaaatcaaa gtcacctgtt tttgaaagtt gttcagtctc tacttgagtt atcgttgaaa
      541 ataattcatc tattgcttta ttatctaatc gttccaataa acgtctagca ataatcatct
      601 tatcgaattc ctctttgaaa atagaaaacc agtttttctg atagtcgtat aataatttgt
      661 cattgttttg ttgtatagca ttagcaatgg ccctgccagc aaaaattcct cccattccac
      721 aggtatatat tcctccagca gtggtaggct tagtctgtcc tgcagcatct ccgattatta
      781 gagttcgttc ataaacaaag gtttccagtg gtcccctgac ccaaattggc gcatatacct
      841 tacggatgac tgaatatgac tgtcctttac tatccatata tgattttaag gtatttgcag
      901 gattgatcga tttacctgca acgcctactt ttgcttttcc tctgcctgtt ggaataatcc
      961 atgcaaaaaa tcctggatat ctttcactat caaacttaac ctcaattgta tcgtgctcaa
     1021 tccaagaagc atacacctca tattgagctg attgcaacac tccctctcta tttctctgaa
     1081 gaattgatgt gacacctctg gcgtcaacga aataattgca ttttagatta ccttctgatg
     1141 ttcttatgtc atagtagtga tgattatcat tattaccaaa atcatttgtt ttagatatag
     1201 accgcataga acatctaact cgaatatttc cccccaatct ttgagtttga aaagcaattt
     1261 gtttatcaaa tacacgtctg tcaagaacaa ttactttttg ttcttctgca ttcaattcaa
     1321 aagtttttga ggaagaggca attcttgcat atttgatttt attttcaatt gcattacttg
     1381 atgggataat gccaagactt tgtattccat taatgctaac aagtccgccg caatgctccg
     1441 gcgttccaat ttctgcatcc tcttcaagaa tagcaacaga tagacctttt gcagctattt
     1501 ctctgcctgc tagtagcccg gaaacacttc ccccagcgat gattacatca taataatcag
     1561 acataaatga cacataagta acatggaagg gtaaattata ctattataat taaaagatat
     1621 aatctgactt taataatact ttactaatct ctaatataca tgatattact acattatgtt
     1681 attaaccaat taaatactaa tctggagtta gcttccaata ttctctgtag actttagttg
     1741 cctctgactc tcttatgttt aatgcaatat ctacttgtaa tggagtcttt ctatcagaaa
     1801 agagtttgta gggttgggtg gacagagata ggtgttgctg ttgatgttgt tcttggcttt
     1861 tctcagcatc accttgttct tcttctaatc cttctgtcct ctcttcagct gccttattca
     1921 aaataactcc tatatctcta aatgacattc tagcctcttt tgctatatca cgtatagttt
     1981 taccttgatt gtaaagctct taaacaagtc tttctctttc ctgtttagtt aatatcgtca
     2041 tatattttgt atcttcaaga atatatagca taatggaagc ttaaagctgt tattgttatc
     2101 atttgttacc aattttggta tcattgatat tggttttgtt aactgtgtta tcatctgctt
     2161 tcaactgtta ccaatataca gtatttgcat tcagagtatt tgtattaata gtgtcatata
     2221 tgtacaaaat atggatggta catttttttg aaattatctt tcgatacaat accattattc
     2281 gttctttctg acacattgtt ttttaatgcc tagttgcatt atccattgat tctactacta
     2341 ggatgtttta cataatcatt taatttctaa aggtaaatta cttttgaagt ctaaatatac
     2401 tcttttatga accatttgtg tctctttaga ctcatttttg tatgtaaaag tgtcagaatg
     2461 ccctagatga tggatagaag aagatagttg aagaagaagt tactaatgtt ctgacagatg
     2521 gtaaagtact attgcaattc gcttttgcat cagtaataga agcaataata cgaaacccag
     2581 acaaatataa tgatattctt gtatgtaata cgccattatc atcaacatct atgcctgcac
     2641 aacaattgat actatcattg catattggga gttataagga tatgatacga gacgaagata
     2701 atagacttta tgatctacta gtgaaacatt ttacaaatac tattatggat aatgctgttg
     2761 gtgcttcttc atctaattct tcattatcat ctacattccc gctatctaat caatgtgata
     2821 tggacagaaa
//
LOCUS       DATAAS010000163         7359 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3933468, whole genome shotgun sequence.
ACCESSION   DATAAS010000163 DATAAS010000000
VERSION     DATAAS010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7359)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7359)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7359
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3933468"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            81..926
                     /locus_tag="VHF08_02640"
     CDS             81..926
                     /locus_tag="VHF08_02640"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEX2067577.1"
                     /translation="MSSQQITRLKIVLLLISSYIAVEVIGGLLTGSLALIADAGHMLT
                     DAGGLALALFAINFSTKPATPQRTYGFYRIEILAALANGAVLILVSIYIIYDAYGRII
                     EPPEIQSIPMISVAAIGLAVNLVGMKLLKVHAKDNLNIEGAYLEVLKDTLGSVSVILV
                     GVIIFTTKFYLADPIISVGLAFYILPRTWSLMKKSINILMEGVPINISYEEVKKAILQ
                     IKGVTGVFDIHIWTITSGMDAITAHVVVSDPSKSQTILKEISSILEKRFKITHTTIQI
                     ETYHT"
     gene            1359..2207
                     /locus_tag="VHF08_02645"
     CDS             1359..2207
                     /locus_tag="VHF08_02645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2067578.1"
                     /translation="MDTILQVNNVKKYFPVNIGIRRIFHSTGRHYIKAVDDVSLTIEK
                     GKVFVLAGGSGSGKTTLARLILRAIDPDSGSIVFDGEDITRTTGKKLKKFRINTQMIH
                     QDPYTSINPRMKIMDVIMEPLNIYNKQDSKQQRIEKVLKSLEDVRLEPAIDIAEKFPH
                     MLSGGQRQRASLARALVLKPKLIIADEPVSMLDVSIRAEILEIVKTLKDKFQISYLYI
                     THDLSTARYIGDNIAIMFNGKIVEAGPIDRVLLNPFHPYTQALIDAVPELNTDNNTLQ
                     NKTNLY"
     gene            complement(2340..5882)
                     /locus_tag="VHF08_02650"
     CDS             complement(2340..5882)
                     /locus_tag="VHF08_02650"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003682 - chromatin binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007076 - mitotic chromosome condensation
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation SMC family protein"
                     /protein_id="HEX2067579.1"
                     /translation="MVYIKKLEIYGFKSFGFRNTIISFEKGLVAVTGPNGSGKSNILD
                     AILFAIGENSPKALRVNKLQSLFHDSQNSSHRLIRVSLTFDNADRGIPIDSDLVILTR
                     EMEGQTGDSQYHLNGKKVSKTTIVELLEVVMAAPNKINIVQQGMITRISELNVEERRK
                     IIEDIVGLSYFDEKKTEALKQLEESDRRLEVALARMGEIRRRIDELEIERNDQLRYEQ
                     LESELKRFKAIQLSNAIISVRNKLELQNRLLESNSQKVTELFKQIEELQSQIQKIDSE
                     KLKFIQEIDIANRSKAQTGSRIANIVYESERMKAIMKESEQRCLQIEKRISSIDLEKQ
                     NMNRQLDDFRHQADQNKSVMNYKSSKIIALKTELGDIDNELEKLTRRIAIYARIRDKL
                     EYRYDTLLRIKNDLDVSFARLEEKVRANEEKLKANKLNAIYLKNEVDNCTTLLADLHE
                     TLKLQNTKLEAEVRTLQNLKTLKSTFEKELKSSSILLNRADNVTTKYEAKSVIAKNAR
                     NEDFAIAELMKGSEKFGIKGLVHHMMTWDKKYEKSIFAAGSEWMKAFVVDNVKSMILI
                     AEYAKTKKLPRLKIIPLDIIKYVKYSKIPYEDVSIIGNLADFVYSDFKELSNFIFGNT
                     FIVRGPTAAYILSKQGYRAVSVDGELFEPKGACMSLDFGSKISDLTKAILLSSTVDIL
                     RGSLETLRTTIETKKNDLEELILKINCSESEKIKIEERISNLNQQLSSQTIMMGQVEK
                     KQQQLVSDNALFQSERNTLTIDVDRVIRRLSILTSSMKKVLERIGAIDDSTIRNELDK
                     INLRRNLILKSIEELDFELRQTITSSAGVSSKIEISLERMKGIEDEKDQLISELSHRR
                     TQTKELEIKLKSIESELVSLRDQEQQIIDSSGRSYSIVQEYEKKLKLMNENERKLNKE
                     YNTIEKDNALLRKDILDQAAQESRLTNDLHWLGYKSLLETFDVDTVIKELTDEYEAIK
                     ARINLRADESYVQVIEGYRSMSNRKNHLETERNSIVLFIEEIVKEKENVFMDAFNKVD
                     NDIRKTFSQVTGGAAWLEIENVEDVFSSGIMLMVQFPGKQGRESTALSGGEKTMAATI
                     FLLAIQALKPSPFYLMDEVDAHLDAQNTERLSQVLLERSKDNQIIMVTLKDSTITKVG
                     LIYGVYSKNGVSQVVKYRYPNQLSLAKITSVEGK"
     gene            complement(5971..7035)
                     /locus_tag="VHF08_02655"
     CDS             complement(5971..7035)
                     /locus_tag="VHF08_02655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HEX2067580.1"
                     /translation="MSKKIRIAIAGIGNCASALVQGVGYYNKNRESIGLTAYNLGGFE
                     PGDIEFVAAFDVVDTKVGKDLSEAIFEKPNNTVKIYDVNKMDVKVERAEVLDGIGRHY
                     NEKVKISKEPATDVAKVLKDTQAEVLLNYLPVGSRRASQFYAEKCLDAGVCFINAIPV
                     FIASMPKWQQSFQNRNLPCAGDDVMSQLGATVLHKTLVKLFVDRGVKIDETYQLNIGG
                     DMDFYNMLDEERLEDKRISKTSAVEAMIPYPIPMRIGPSDFVRFLENDKICYISMKGR
                     YFGNIPVELDLKLRVVDAYNSAGVMIDAIRGARLALDRNISGPLESISAYCFKHPPVQ
                     MPYSQAKANFIEFVEGKRER"
BASE COUNT         2241 a         1335 c         1132 g         2651 t
ORIGIN      
        1 cataaatata aagcaatttc tactctgtag acaatctata tttgtaagat taataactgc
       61 taatatagat acaccagaaa ttgtcatctc agcaaataac tagactcaaa atagtacttt
      121 tgcttatctc atcatacatt gctgtagaag tcattggtgg tttattgaca ggcagtttgg
      181 ctttaattgc tgacgctggg catatgctta ctgatgctgg aggtctggct ttggctctct
      241 ttgccataaa tttttctacc aagcccgcaa ctccacaacg aacttatggc ttttatagaa
      301 tagaaatact tgcagcattg gcaaatggtg ctgtattaat tttggtctct atatatatta
      361 tatacgatgc atatggacgt attattgagc ctccagagat tcaaagtata ccaatgatat
      421 cggttgctgc tattggcttg gcagtaaatt tggttggaat gaaactactt aaagttcatg
      481 ctaaggataa tctgaatatc gaaggagcat atttggaagt tcttaaagat actttaggtt
      541 ctgttagcgt tattttggtt ggtgtaataa tttttactac taaattttac cttgcagacc
      601 caattatcag tgttggcctg gcattctata tacttccgag gacatggtct ttgatgaaaa
      661 agtcaatcaa catattaatg gaaggagttc ctataaatat atcatatgaa gaagtaaaga
      721 aagcaatact gcagataaaa ggtgtaacag gtgtattcga catccatata tggactataa
      781 catctggcat ggatgcaatc acagcacatg tagtagtaag tgatcctagc aaatcacaaa
      841 caattctaaa ggaaatatct tctattctag aaaagagatt taaaattaca catacaacaa
      901 ttcaaataga gacctatcat acttaatgca aacctggaaa agggggaatg ataaatttat
      961 aataatttac aagcttccat ttactaggag actatcatag atatggactg acgaattttg
     1021 ttttgtgcac ctacaatact ctctataatt gttatactct aaatacggta tagttgttag
     1081 atttatcgtg atattgaaac agttaaattc aacctatact attgattcta ttttctaagt
     1141 aatatagaaa taataaaaaa caattataag ttatgcgtat gtatatacat gtttctataa
     1201 atagaaacat cattattatc ataaatacta tctattggct atattgacta ggatgacgaa
     1261 atcaaaataa tgtacgttat tgatgaatca acttgctatt aaaattgact cttcaggatt
     1321 atttatattc taaattagca aataaataat gctattaatt ggatacaatt cttcaagtaa
     1381 ataatgttaa aaagtatttt cctgtaaata taggtattcg taggattttc cattcgacag
     1441 gcagacatta tatcaaagca gtagatgatg taagtctcac aattgaaaaa ggaaaagtgt
     1501 ttgttcttgc aggtggatct ggatctggaa aaactacttt ggcaagatta attttacgcg
     1561 caattgatcc agatagtgga tcgatagtgt ttgatggtga agatattacg agaaccactg
     1621 gaaaaaaact aaagaagttc cgcataaata cacagatgat acatcaagac ccttatacct
     1681 ctattaatcc tcgtatgaaa ataatggatg tcataatgga accattaaat atctacaata
     1741 aacaggactc taaacaacag cgcattgaaa aagtattaaa atcgttagag gatgtacgtt
     1801 tggagcctgc gatagatatc gctgagaaat ttcctcatat gctttcagga ggtcaacgac
     1861 aaagggcgtc tctagctaga gcacttgttc tgaagccaaa attaattata gctgatgaac
     1921 ctgtctctat gctagatgtt tctatcagag ccgaaatact cgagattgtg aaaactttaa
     1981 aagataaatt ccaaatttct tatctctata ttactcatga tctatctact gctagatata
     2041 taggagataa tattgcaatt atgtttaatg gtaaaatagt tgaggcaggc ccgatagatc
     2101 gggttttgtt aaatccattt catccctata cacaggcatt aattgatgcg gttcctgagc
     2161 tcaatactga taataatact ttgcaaaata aaacaaattt gtattaaaga ggcagaagat
     2221 acattcaatc tatctgaaag tgggatgtaa atttctctat caatgtccat attcaatggg
     2281 taagtgtaaa aacgaaccaa aattgtaaga aggagaaaaa gaccttttat atctcttttt
     2341 tatttaccct ctacggatgt gatctttgca agtgacagtt gatttggata tctgtatttt
     2401 acaacttgtg aaacaccatt tttagaatac acgccataga ttaggcctac tttggttatt
     2461 gtagaatctt tcagcgtaac cattataatt tggttatcct ttgagcgctc aagcagcact
     2521 tgagataacc tttcagtatt ttgggcatca agatgtgcat ccacttcatc catcaaatag
     2581 aagggagatg gtttgagagc ctgaattgct aataagaaaa ttgtcgcggc catggttttt
     2641 tccccaccag acaatgctgt tgactcacga ccttgttttc ctggaaattg taccattagc
     2701 attatcccgc ttgagaacac atcttcgaca ttctctatct ccaaccatgc tgctccacct
     2761 gttacttgtg aaaaagtctt tcttatatca ttatcaactt tattaaatgc atccatgaag
     2821 acattttctt tttctttgac aatttcctct atgaaaagga caatagaatt acgttccgtt
     2881 tccagatggt tctttctatt agacatgctt cgataacctt caatgacctg aacatagctt
     2941 tcatctgcac gtaaattaat tctagctttt attgcttcat attcatctgt gagttctttt
     3001 ataactgtat cgacatcaaa tgtttccagc aaactcttgt atcccaacca atgtagatcg
     3061 ttagtcaagc gtgactcttg cgctgcttga tctagaatgt cctttcgaag taatgcgtta
     3121 tccttttcta tagtgttata ctctttattg agctttcttt cattttcatt catcagtttc
     3181 aatttttttt cgtattcttg tactatacta tacgacctgc ccgacgaatc tattatctgc
     3241 tgttcttgat ctctgagaga aacaagctct gattcaattg attttaattt tatttctaat
     3301 tcttttgtct gagtacgtct gtggctgagt tcggatatta attggtcttt ctcatcttct
     3361 attcccttca ttcgttctaa acttatttcg attttgctgc tcacacctgc tgacgatgtt
     3421 attgtttgac gtaattcaaa atctagttct tctattgatt tgagaattag atttcttctt
     3481 aagtttattt tatctaattc atttctaatg gtagagtcat ctatagcacc tattctttct
     3541 aaaaccttct tcattgaaga tgttaaaatg gaaaggcgcc gtataactct gtccacatca
     3601 attgttagag tatttctctc tgactgaaat agcgcattat cagagacaag ttgttgttgt
     3661 tttttttcta cttgccccat cataatagtt tgagatgaga gttgctgatt caaattgcta
     3721 attctttctt caatttttat tttctcagac tctgaacaat taatttttaa aatgagttct
     3781 tctagatcat ttttctttgt ctcaattgta gttcttaatg tctcgagaga tcctcttaga
     3841 atatcaacag tagagctaag aagtattgcc tttgtcagat ctgaaatttt agatccaaaa
     3901 tccagtgaca tacatgcacc tttaggttca aaaagctcac catcaacaga tactgcccgg
     3961 tatccttgtt ttgacaggat atatgcagct gtgggacctc taacaataaa agtattgcca
     4021 aatataaaat tgcttaattc tttaaaatca gaatatacaa aatcggctaa attaccgata
     4081 atgctgacat cttcataagg aattttagag tatttgacat attttattat atctaaagga
     4141 ataatcttaa gacgaggcaa tttttttgtt tttgcatact ctgcgattaa aatcattgat
     4201 tttacattat cgactacaaa tgccttcatc cattctgagc cggccgcaaa aattgacttt
     4261 tcatattttt tgtcccaggt catcatatga tgaaccaaac ctttgattcc aaatttttct
     4321 gaacctttca ttaattctgc aatagcaaag tcttcattcc tagcgttctt tgcaataaca
     4381 gacttagctt catatttcgt cgtgacattg tctgctctat ttaaaagaat agatgagctt
     4441 ttgagctctt tttcaaaggt actttttaaa gtttttaaat tttgaagtgt tctaacttca
     4501 gcttccaact tagtattttg taatttcaaa gtttcatgaa gatctgccaa taacgttgtg
     4561 caattatcta cttcattttt taaataaatg gcattcaatt tattagcttt taatttctct
     4621 tcattagctc taactttttc ttcaagtctt gcgaatgaaa catcaagatc atttttgatt
     4681 cgcaaaagcg tatcatatcg atattctaat ttatctctga ttctagcgta aattgcaatt
     4741 cttctagtca gtttttctaa ttcattatcg atatctccta actctgtttt taaagcgata
     4801 atcttagatg atttgtaatt cataacactc ttgttctgat cggcctgatg gcgaaaatca
     4861 tctaattgtc tattcatgtt ttgtttttcc aaatctattg aagaaattcg cttttctatt
     4921 tgaaggcaac gctgttcaga ctccttcatg attgctttca ttctttcaga ttcatatact
     4981 atgtttgcta ttctactgcc agtttgtgct ttggatctat ttgcaatatc aatctcttgg
     5041 ataaatttta gcttttctga atcaattttc tgaatttgtg attgaagttc ttctatctgt
     5101 ttaaacaatt ctgtaacttt ttgactatta gattcgagaa gtctgttttg caattccagc
     5161 ttatttctaa ctgagattat tgcattcgaa agttgaatcg ctttgaatct tttaagttct
     5221 gattctaact gttcatatct taattggtcg tttctctcta tctctaattc atcaattcgt
     5281 ctgcgaattt cccccattct tgcaagtgca acttcaagtc gtctgtcaga ctcttccaac
     5341 tgttttagtg cctctgtctt cttctcgtca aaatatgaga gtccaacaat gtcctcaata
     5401 atctttctac gctcctccac atttaattca gatatacggg ttatcattcc ctgctgtacg
     5461 atattgatct tgtttggtgc agccattact acttctagca attccacaat ggtggtttta
     5521 gatacctttt tgccgttaag atggtattga ctgtctcctg tttgaccttc catttctctt
     5581 gttaagatca ctaaatcaga atctatagga atgcctctat ctgcgttgtc aaaagttaaa
     5641 cttactctaa tgagtcgatg tgagctattt tgactatcat gaaataacga ttgaagttta
     5701 ttgacacgta atgctttagg gctattttca cctatagcga acaatatagc atctaaaata
     5761 ttgcttttcc ctgagccatt aggcccagtg acggctacaa gtcctttttc aaaactgatt
     5821 attgtattcc taaaaccaaa tgacttgaag ccgtaaattt cgagtttttt aatgtaaacc
     5881 aatgaatgat tgctaatgag agtttactgg gactattatg tgttttagag tattatcgat
     5941 ctcctttttg taaatatttt taacctatat ctatctctct ctttttcctt caacaaactc
     6001 tatgaaattt gctttagctt gggaatatgg catctgtaca ggaggatgtt taaagcaata
     6061 tgcagaaatg ctctcaagtg gaccagaaat gttcctgtca agagctaatc ttgctcctct
     6121 tattgcatca atcattactc ctgcgctgtt atatgcatct actacacgta gtttaagatc
     6181 tagttctact ggaatattac caaaatatct gcctttcatt gaaatgtagc atattttgtc
     6241 attttctaga aatctaacaa aatctgacgg tccaatacgc ataggaattg gatacggtat
     6301 cattgcttct actgcacttg tcttacttat tcttttgtct tcaagtcttt cttcatcaag
     6361 catattgtaa aaatccatgt caccgcctat attcagctga taagtttcat ctatctttac
     6421 tcctctgtct acgaacaatt ttactaatgt cttgtgtaat acagtagcac ccaactgact
     6481 cattacatca tcacctgcac aaggaagatt cctattttgg aatgattgtt gccattttgg
     6541 catagaggca ataaaaacag gtatggcatt aataaaacag actcccgcat cgagacattt
     6601 ttcagcataa aattggcttg cacgtcgact tccaacagga agataattta aaagaacctc
     6661 tgcctgagta tcttttagaa cctttgcaac gtcggtagct ggttccttag agattttcac
     6721 cttttcatta taatgcctac ctattccatc taacacctct gccctttcaa ccttgacatc
     6781 cattttattt acatcataga tcttgactgt attatttggt ttctcaaaaa tcgcttctga
     6841 caggtctttg cctaccttgg tatccactac gtcaaaagct gcaacaaatt caatatcgcc
     6901 aggttcaaat cctcctaaat tataggcagt aagacctatt gactctctgt ttttattgta
     6961 ataaccaaca ccttgaacaa gagcagatgc gcaatttcca atgcctgcaa tagcaatgcg
     7021 aattttctta gacataaaaa agatatcata tttacaccgt atttaatcta tatattaaaa
     7081 aaggaagata atatatatac attaatctaa atagatattt catatttata agccagttgc
     7141 cgtaccatgt acatatttcg atgcactttt aataatgata aataactatg acaataccgc
     7201 agttaattga ttaatataac cgaattgtat acaaattctt ctgaattctg aatctataat
     7261 cttatcacaa ccaggctact accatctata tccaggatca tcttctaata ctttttcaaa
     7321 tatagaaaga taattagtta tcattatttt gtctgtgaa
//
LOCUS       DATAAS010000164         2960 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3392488, whole genome shotgun sequence.
ACCESSION   DATAAS010000164 DATAAS010000000
VERSION     DATAAS010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2960)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2960)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2960
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3392488"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            112..1242
                     /locus_tag="VHF08_02660"
     CDS             112..1242
                     /locus_tag="VHF08_02660"
                     /inference="COORDINATES: protein motif:HMM:NF013087.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008171 - O-methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase"
                     /protein_id="HEX2067581.1"
                     /translation="MTDTQQQQQEQGISPSPDPIFQMLTGFWVSKALMTAVELEVFTK
                     LAGKSVNMQQLQKILEMENRPAKVFSTALVSLGLLSKVERRKSNGNIMAANEEQTEEQ
                     NDYYYYYSNSHLADTFLVKGKPGYMGDIISMFDKRLYKSWDKLNQSLKTNKPIVQEEG
                     GDAESIWEQAKSNQAIEQMKKFTHAMHGLSIGPAMALTKVFDFSTYNKMMDVGGGSGV
                     YSIQVVKENPNMHAVVLDVNAVCQVANGYIEQFNLQDKIQTQALDFFKEDLPEGCDLA
                     LLSHILHDHSEEKGRLLLKKIYDSLLTGKKGAVIISEWLLNDEKTGPQASALMGLNMI
                     VETTGGRNYSFAEISEMLMGAGFNDIEKRPLAGPAEIIIGYK"
     gene            1943..2557
                     /locus_tag="VHF08_02665"
     CDS             1943..2557
                     /locus_tag="VHF08_02665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067582.1"
                     /translation="MANKLTLFNNAYYHDEQEGNRKKVIIKDGKYHQDSIRIRLQGID
                     SPELHYKASQGDQFLYDNQLSKFKCLNDVFEFRQHFEARAAKELVELLKGYAKEENKR
                     KFLYAYAFSLIDTPSNLFDRFGRAVADVVVFSHNKTHDISDDNKNAQENTDDINLNQW
                     LVEEGCVFPDYYDSMSNEEILSLQEKSKIASNTKKELDPNILQN"
BASE COUNT         1106 a          432 c          550 g          872 t
ORIGIN      
        1 tgagaatata catcaccttc ataaaagcct cataaccgca ttatgtattc gtatttattt
       61 aagtccaaat acttaagtag tgaaaagatg gttttgaagt aaatggaaga aatgacagat
      121 acccaacaac aacaacaaga acaaggaata tctccttctc cagatccgat ttttcaaatg
      181 cttactggat tctgggtatc aaaagcgtta atgactgcag ttgaattgga agtttttact
      241 aaattggctg gtaaatcagt aaacatgcaa cagctacaga agattctgga aatggaaaat
      301 cgtcctgcta aagtattttc tacggcactt gtatcattag ggttattatc gaaagttgaa
      361 agaagaaaaa gtaatggaaa cattatggca gcaaatgaag aacaaacaga agaacaaaac
      421 gattactatt attactattc aaattctcat ctagcagata cttttcttgt caagggaaaa
      481 cctggatata tgggtgatat cataagcatg tttgataaac gtctatacaa gagttgggat
      541 aaactcaatc aatctctaaa aacaaacaag ccaatagtac aagaagaagg aggagatgca
      601 gaaagcattt gggagcaggc taaatcaaat caagcaattg aacaaatgaa aaagttcact
      661 catgctatgc atggtttaag tattggtcca gccatggcct tgactaaggt atttgacttt
      721 tcaacctata acaagatgat ggatgttgga ggaggctcag gggtctattc tatacaggta
      781 gtaaaagaaa atccaaatat gcatgcagta gttttggacg taaatgcagt ttgtcaagtt
      841 gcaaatggat acatagaaca atttaattta caggataaaa tacaaacaca ggcattagat
      901 ttttttaaag aagaccttcc agagggttgt gatttagcat tgctatctca tatcttacat
      961 gatcatagtg aagaaaaagg gaggttatta ctaaagaaga tttatgacag ccttttaacc
     1021 ggaaagaaag gtgctgttat tattagtgaa tggctattaa atgacgaaaa gactggacca
     1081 caagcatctg ctttaatggg attaaacatg attgtggaaa caactggagg tagaaactat
     1141 tcttttgctg agatatctga aatgcttatg ggagcaggat ttaatgacat agagaaaaga
     1201 cctttagctg gacctgctga gattataata ggttacaaat agttgttgcg acaaagaaaa
     1261 agttattaaa gcaaatgaat cattgctatg aactttttac cattgcaatt tcacaatatc
     1321 gcatttgctt tgcgaatgat aagatttatg cgtttatctt ttcttcttta ttgtgacata
     1381 taaatgagaa caacctctag ctcataagaa ggtcttaatt atttcatatt ttatcataca
     1441 cataattgac ctggtcgttt gtgaactgtt atcgacacaa atttccgggc caaggatatg
     1501 aataaaattt ggccttatta gtggagacat tacttcattt cattattata agcgcaaaat
     1561 tagatgagag ttgatatggg ttcggtggga tgtgaaccat ttttaacata atttaaactt
     1621 aagaaatgaa tatgtctgta gcaataccaa atattattta tactgacaaa taagcaagta
     1681 ttagaacgta taaattccaa cattaacata tcataaagag ttcttatcaa agtaaaagta
     1741 acaactcaat cctgttataa atatgagcca aatatctatc gacgaatgcg atcaaaaatt
     1801 acaaaggaag agtggaaatc catggaaaga tttacctata ccaattcttt agtgcacaga
     1861 aggatggtgt atgtgatgca gatacactta gaattgtctt atcgcctgat tcgataaagt
     1921 atcgtccaag tcaaaatgat aaatggcaaa caagctgact ctattcaata atgcttacta
     1981 tcatgatgaa caggagggaa acaggaaaaa ggttatcata aaagatggga aatatcatca
     2041 ggattctatc agaataagac tacaaggaat agactcacca gaattacatt acaaagcaag
     2101 ccaaggggat caatttcttt atgacaacca gctttctaaa tttaaatgcc taaatgacgt
     2161 tttcgaattt agacaacatt tcgaggctag agcagcaaag gaattagtag agttactcaa
     2221 aggatatgca aaagaagaaa ataaaaggaa attcctttat gcctatgcct tttccttgat
     2281 agatacacca agcaatctgt ttgataggtt tgggcgagca gttgctgatg ttgttgtttt
     2341 ttctcataat aaaactcatg atatcagtga tgataataaa aatgcgcaag aaaatactga
     2401 tgatattaat ttgaatcagt ggctagtaga agagggatgt gttttccccg attattatga
     2461 ttcaatgtct aatgaagaaa tattatcatt acaagagaaa agcaaaattg cttcaaacac
     2521 taaaaaggag ttagatccaa atatattaca aaattagttc cttcagatta ttatttagtt
     2581 ttcgaaaaag gcgaaactga taaaaatatt gatgcttttg aaggtctgat aaatttaccc
     2641 aagttcttta gaaaacaagt cgactatgaa atactaaaga gatgtggatt attccgtggc
     2701 gattcaccaa taaagacatt gaaaaaatat attgaactta aaaactcagt gttataaatt
     2761 ggatgaattt ttagaaaaga gatattgtgc acagaaacac gagctagccg aatttattga
     2821 tgatgacgga tccatggata aggttcaacc cggaactctc aacattgaga gtgacgcaca
     2881 aatagaaact cctaatatca ttaataattg gtattaggtt tagtatcttt ttaaccacta
     2941 gagaatgtat ataacgatct
//
LOCUS       DATAAS010000165         1753 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_156011, whole genome shotgun sequence.
ACCESSION   DATAAS010000165 DATAAS010000000
VERSION     DATAAS010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1753
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_156011"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(217..561)
                     /locus_tag="VHF08_02670"
     CDS             complement(217..561)
                     /locus_tag="VHF08_02670"
                     /inference="COORDINATES: protein motif:HMM:NF025178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske (2Fe-2S) protein"
                     /protein_id="HEX2067583.1"
                     /translation="MSEEQYQKVANKSDLQEGGLLKVHVKDKQLVLSMVEGKVYAIDN
                     ICTHRQGPLNEGELRGHNLKCPWHYAVFDVRDGKVSDRTVWATNLNSYPAKVDETSGD
                     ILVNPDKGIKKA"
     gene            complement(915..>1753)
                     /locus_tag="VHF08_02675"
     CDS             complement(915..>1753)
                     /locus_tag="VHF08_02675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HEX2067584.1"
                     /translation="IIHSQSILSLAMWHFMEQKLDALTAIPRLLCEDVWTKITLPLIW
                     AISYVRYSPLRANSPKTTTGYFFGSFYIISRKAYEAVGTHKAVKGEIVEDGALGGLVK
                     KAKFRLKVVRGEHYIDAIWARDFNTLWHGLRRLMIPLYHQDKIHASLITIAACFLLLM
                     PFVLLPFSFFLLPGVPVTPNITGSFLDGYYFISHNFISWNQILLLFNLITIALILLSS
                     AIQSKYVLLNSSIYSLCSPIASVIISFGFLSSIIDARKKEVIVWRGRTYTVNNTSQHP
                     LH"
BASE COUNT          577 a          320 c          293 g          563 t
ORIGIN      
        1 gtcttgtttt gccctcacat aaaaatatgg ctaagactat tttagaagag ttttgcctat
       61 tctttatctt tatactgaaa tgccatgcct tgtataataa atctaaattt aaatcaagat
      121 tgaattacaa ttacaaaata caaaattctt tcttagactg acaattaatg ctattgtcaa
      181 ttagggagta gttgtactaa catttagttg atactatcac gccttcttta tccctttgtc
      241 tggatttact aatatatcgc cgcttgtttc atcaactttt gctggatatg aattcagatt
      301 tgtggcccat acagttctat cagagacctt cccgtccctt acatcaaata cagcataatg
      361 ccaaggacat ttcaaattat ggcctctaag ttctccctca ttcagtggac cttgtctatg
      421 agtgcatatg ttatctatag catacacctt tccttcaacc atagataaca ctaattgctt
      481 atccttcaca tgaactttca gcagacctcc ctcttgtaga tcacttttat ttgctacctt
      541 ttgatattgt tcttctgaca tacaataatc aaagatatcg atgacagtta aactttctgt
      601 agagttaaaa agtaaagtaa agtaaagata agttcactaa cttgaagtat tttttgccct
      661 ttcaatatta ttcaacattg atacgatata taaactacga tgacgagaac gtttactaaa
      721 aacaagaaac ggatctacaa ctaaccaaag tcaaacatag tacagtggtt agaaggagaa
      781 ttggaaagca tcggtttagc atttatgcaa tcgtctggca aaaatgttta ccaagattat
      841 tgtcgattgt tcttgtcaaa gtaaaagtaa tgatttccta ggctctgagt ttgagtattc
      901 cagctgatct ctatttagtg taatggatgt tgagatgtat tattaactgt ataggttctg
      961 cctctccata caataacttc tttcttcctt gcatcgataa tagatgaaag aaacccaaat
     1021 gagatgatga cactggctat tggagaacaa agtgagtata ttgaactgtt taaaagtaca
     1081 tactttgact gtatagcaga acttaacaat attaaggcaa tggtaatcaa attgaaaagg
     1141 agtaaaattt gattccaaga tatgaagtta tgactgatga aatagtaacc gtccagaaaa
     1201 cttcccgtta tgttcggagt aacaggtact cctggtaata gaaaaaaaga aaatggaagc
     1261 aatacaaaag gcatcagtaa tagaaaacat gctgcaatcg taattaggga agcatgaatt
     1321 ttgtcttgat gatatagtgg aatcatgagt cgacgtaaac catgccataa tgtattaaaa
     1381 tctcttgccc atattgcatc aatgtaatgt tcaccacgaa ctactttcag cctgaatttt
     1441 gctttcttta ctaaaccacc taacgcgcca tcctccacaa tttccccttt taccgcttta
     1501 tgagttccaa cagcctcgta ggcctttcta gatattatat aaaaacttcc aaagaaatag
     1561 ccagttgtag tctttgggct atttgcacgc agtggagaat atctaacgta tgaaatggcc
     1621 cagataagtg gtaaggttat tttcgtccaa acatcttcac acagaagtcg ggggatcgca
     1681 gtaagagcat ccagcttttg ttccatgaaa tgccacatag ctaatgacaa aatggattga
     1741 gaatgaatta tgt
//
LOCUS       DATAAS010000166         3883 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1784572, whole genome shotgun sequence.
ACCESSION   DATAAS010000166 DATAAS010000000
VERSION     DATAAS010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3883
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1784572"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..918)
                     /locus_tag="VHF08_02680"
     CDS             complement(<1..918)
                     /locus_tag="VHF08_02680"
                     /inference="COORDINATES: protein motif:HMM:NF013568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067585.1"
                     /translation="MTNIKRLKSLLLLTTLATMSNSHNIHPIERSLLHALSTNDRISA
                     ERIAHITNLSIDQVRRGIEWLKFKNLISFTDKSFTIILPGPDMEGIGVNELPERKLVK
                     IIKEKGKKNLETGEHYISIKDLFQEGYFSDNDTSSAFRHALRNKWIEQRKTSIGEKEV
                     VLTSLANYQSAEEELLQKLNEQKKILKSNLNPEELKAFDMLKKRPGYVVEKKQKSAEI
                     SLTAEGKQLLLTMIDQPVMEERRLTSEMITSGRWRNIKFSSLDVESPVQFVYPGRKHP
                     LMDVIDEVKEIFVGMGFTEIDGPIIQSSFW"
     gene            939..2108
                     /locus_tag="VHF08_02685"
     CDS             939..2108
                     /locus_tag="VHF08_02685"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEX2067586.1"
                     /translation="MVDPLSNRQNGETENNVHKEFKVTPWEVEGEIDYNKLIENFGTQ
                     TITPEILTKVKDLIGEIHPMLKLQYFFSHRDFDWILTKYENGDKFYLYTGRGPSGMIH
                     MGHLLPWIFTKYLQDKFNVKLLFQLTDDEKFLYGQDRTLEEIKHFTYENILDIIAVGF
                     DHRKTKIIVDTKHIKHLYPIATELAKRITFSTAKAVFGFSNSTNIGMIGFPSIQAAPC
                     FLPSIIEGKPTPVLIPAAIDQDPYWRMTRDVAERLGYHKPAQIHSKFLPGLGISGKMS
                     SSRPETALFTTDDPEIIDKKVSSAFTGGQATVALQRKLGGNATGCPVFWYLRYFFDTE
                     RESDERLLKCKSGNLLCGECKSDLATDSKSFIVDFKKRRESAKDLIKEFMYNGET"
     gene            2211..2414
                     /locus_tag="VHF08_02690"
     CDS             2211..2414
                     /locus_tag="VHF08_02690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067587.1"
                     /translation="MITGIGAIVNNEIVLVLKDKSSHSVLLKDDNTALRLKSLIEEVS
                     KEKKSVIGSKFEDYVTEIIVSEC"
     gene            complement(2497..2841)
                     /locus_tag="VHF08_02695"
     CDS             complement(2497..2841)
                     /locus_tag="VHF08_02695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067588.1"
                     /translation="MSTFNHDPFEFNLTKISTTIKNLKEGLDPENLAYWYKRIEDQAI
                     EIAPLHLKKKIHFQQDRILWMKFKIDISKRAVPYVIQVIEEYIPIMPYSTGLYFQKVQ
                     HMLMDEMNKDLC"
     gene            complement(2910..3392)
                     /locus_tag="VHF08_02700"
     CDS             complement(2910..3392)
                     /locus_tag="VHF08_02700"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEX2067589.1"
                     /translation="MEMKYNVVATGGTFDEIHVGHLALLSKAFEIGKKVIIGVSSDAF
                     AKSTKGNNTLHHNYEERISNLKEKIEEKFGDVTYEITKLDNVYGPTVIYGDVEAIVSS
                     SETAIKGDLINDIRSRNGLKPLNIIIVNMIRAEDGYPISSTRIRNGEIDSFGKLLKTN
                     "
     gene            complement(3622..>3883)
                     /locus_tag="VHF08_02705"
     CDS             complement(3622..>3883)
                     /locus_tag="VHF08_02705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="4Fe-4S dicluster domain-containing protein"
                     /protein_id="HEX2067590.1"
                     /translation="KVWGPLDAPGQLGIWGTEVCVDFDICVADGACIEACPVNVYEWL
                     DTPGHPASEKKPFMIREKDCIFCMACENVCPPQAIKIFQKGQ"
BASE COUNT         1243 a          692 c          645 g         1303 t
ORIGIN      
        1 ccagaaacta gactggatta taggaccatc gatctctgtg aatcccattc caacaaaaat
       61 ttcctttact tcatcaatta catccattaa tggatgcttt cttcctggat atacaaattg
      121 tacgggcgat tctacgtcta acgaactgaa tttaatattc ctccatctcc ctgaagttat
      181 catttctgag gttagccttc gttcctccat gacaggttga tctatcattg ttaacaacaa
      241 ttgcttacct tctgctgtta gtgaaatttc agcagatttc tgcttttttt ctactacata
      301 accaggacgt tttttcagca tatcaaatgc ttttaattct tctggattca ggtttgactt
      361 tagaattttt ttttgttcgt tcaatttctg caataactct tcttctgctg attgataatt
      421 tgctaagcta gtcaaaacaa cttctttctc cccgatagag gtttttcgtt gttcgatcca
      481 tttgtttctc aaagcgtgtc gaaatgcaga gctggtatca ttatcggaga agtaaccttc
      541 ttggaagaga tcctttatgc taatataatg ctctcctgtt tctaaattct tttttccttt
      601 ttcttttatg attttcacga gctttctttc gggtaattca tttactccta ttccctccat
      661 atctggacca ggcaagataa tagtaaatga cttatcggta aaagatatca aattcttaaa
      721 ctttaaccac tctatgccac gtcttacttg atcaatactt agatttgtaa tatgtgcaat
      781 tctttcagca gatatcctat cattggtaga aagtgcgtgt aacaaggatc tctcaatagg
      841 atgaatgttg tgactattac tcattgttgc caaagttgtc agcagaagaa gactttttaa
      901 acgtttaatg tttgtcaaat tgtcaaagtt gaaaattaat ggtggatcct ctttcaaacc
      961 gtcaaaatgg tgaaactgaa aataatgtcc ataaagaatt caaggtgaca ccttgggaag
     1021 tagaaggtga aatagattac aataaattga tagaaaattt tggcacacag accattaccc
     1081 ctgaaatact tacgaaagta aaagatctga ttggagaaat tcatccaatg ttaaagcttc
     1141 agtacttctt ttcacatcgg gattttgact ggattttaac caaatacgag aatggtgaca
     1201 aattctacct ttatacaggt aggggacctt caggcatgat tcatatgggt cacttgctgc
     1261 catggatttt tacaaaatat cttcaagaca aatttaatgt taaattacta tttcaattaa
     1321 cagacgatga aaaatttctg tatggccaag atcgtacgct tgaagagata aaacatttta
     1381 cttatgagaa catattagat atcatcgcag ttggttttga tcatagaaaa acgaagataa
     1441 ttgtagatac aaaacatatc aaacatttat accccatagc aacagaactt gcaaagcgaa
     1501 ttacattctc tactgcaaag gcagtatttg gtttttcaaa ttctacaaac ataggcatga
     1561 taggatttcc atcaatacaa gctgctccat gttttttacc ttcgataata gagggtaaac
     1621 caactcctgt cttaatccct gcagcaatag atcaagatcc ttattggaga atgactcgag
     1681 acgtagcaga acgattggga tatcataagc ctgctcagat tcacagcaag tttctaccag
     1741 gtcttggaat ttcaggcaaa atgtcttctt caagacccga aacagcacta tttacgaccg
     1801 atgatcctga aattatagac aaaaaagttt ccagcgcttt cacaggagga caggctacag
     1861 ttgcgcttca aagaaaattg ggaggtaacg ctactggatg tccagtattc tggtatctac
     1921 ggtatttctt tgacacagaa agagaatctg atgaacgctt actaaaatgc aagagtggaa
     1981 acttactttg tggagaatgc aagagtgatc tggcaacaga ttccaagtcc tttatagtag
     2041 atttcaagaa acgcagagaa agtgcaaaag atttaatcaa ggaatttatg tataatggag
     2101 aaacataagg tgaaaatacc atagcacttt cagtaagatt tgaatgcgag gataagtatg
     2161 aagcagagaa actagccggt ctgatagctg ttcaaaaaaa tggtactacc atgattacag
     2221 gtatcggtgc tattgtcaat aatgagatag ttctagttct gaaagataaa tcctcgcata
     2281 gtgtactact gaaagacgat aatactgcac tgagacttaa atctttgata gaagaagtat
     2341 caaaagaaaa aaaatcagtc ataggaagta aatttgaaga ctatgtcact gaaattattg
     2401 tttcggaatg ctaatacaca ttttgattgg agagaagcat atgtatactt ctgccttcaa
     2461 attcaggttt tgaattctca tcattgcacc tgatttttag catagatctt tattcatttc
     2521 atccataagc atatgctgta ccttttggaa atatagacct gtagaatagg gcattattgg
     2581 aatatattct tcaattactt gtatcacata gggtacagcg cgttttgata tatctatctt
     2641 aaatttcatc caaagaattc tgtcttgttg gaagtgaatt ttctttttta agtgaagggg
     2701 agcaatttcg attgcttgat cttctattct tttataccaa taagcaagat tctcagggtc
     2761 tagtccttct ttgagattct ttatcgtcgt gctgatttta gtgaggttga attcaaatgg
     2821 atcatggtta aaagtactca tatttatata aatatacaat gcgtcaatct atgataaaac
     2881 gtcattaatc aaaaatgatt gatccttctt taatttgtct ttaacaattt gccaaaggaa
     2941 tcaatttcac catttcgtat tcttgtagaa gaaatgggat agccgtcttc tgctcgtatc
     3001 atattaacga taataatgtt aagaggtttt agaccatttc tagaacgtat atcatttata
     3061 aggtctccct ttattgctgt ttcactgctc gatacaatag cttctacatc tccataaatt
     3121 actgttggac catatacatt atcgagctta gtaatttcat aagtgacatc accaaacttc
     3181 tcttcaattt tttcttttag gttacttatt cgttcctcat aattatggtg caaagtgtta
     3241 ttgcctttag tactttttgc gaaagcatcg ctagaaactc caataattac tttctttcct
     3301 atttcaaaag cttttgaaag caaagccaag tgaccaacat gtatctcatc aaatgttcca
     3361 ccagttgcta ccacattata tttcatttcc attgcttgta ttctacgaaa atcgaagatt
     3421 tatacaaata gagtaaatat agaatatggt taagatgttg taaaaaagag attgatgatc
     3481 caaaagaatc aagctcaaat ttttgcatag atattaatga ttttttcaat aataatagca
     3541 ataattttat acttctatta tttgaatatt cttagttcct aaagcaaaga acaaaaaatt
     3601 agagaaacaa gtatattata attattgacc tttttggaat attttgattg cttgaggagg
     3661 gcacacattc tcgcatgcca tacaaaatat gcaatccttt tctctaatca tgaaaggttt
     3721 cttttctgat gccggatgtc ccggagtatc tagccattca tatacattga ctggacaagc
     3781 ctcaatacat gctccatctg ctacgcatat atcaaagtca acgcatactt cagttcccca
     3841 tattccaagc tgtcctggtg catctaaagg accccatacc tta
//
LOCUS       DATAAS010000167         5948 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_158163, whole genome shotgun sequence.
ACCESSION   DATAAS010000167 DATAAS010000000
VERSION     DATAAS010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5948)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5948)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5948
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_158163"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1084)
                     /locus_tag="VHF08_02710"
     CDS             complement(<1..1084)
                     /locus_tag="VHF08_02710"
                     /inference="COORDINATES: protein motif:HMM:NF012550.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEX2067591.1"
                     /translation="MQSLAQQNSSHSVSSIKNILEDSSLTFAEKAISIKSLTLKNKQG
                     EVSKPSMAGDIAIVDVDLAMAQDSTGPLAIRSLNEMRVNKLFNPSRVLLVIDHTFPAA
                     DEKVANLHAMMRGFASKHSCMLVEGSISHQHILEYLAVPGMMILGADSHTCQAGCISA
                     FATGIGSTEMAAVWATGQIWLRVPETIKIKLSGNFSKGVFARDLILDYIGKVGEDGAN
                     YKALEWTYANDNTRKEFSVDSRACISNASMECGAKISVFPTDELTRTYLNENPRIIKD
                     VPEIDIQPGSSANYVEKIEIECGKIEPMVAGPDHPDLVHSVGEISGMEIDQAFIGSST
                     NGRIEDLEIAARILKGRKVHKNTRCVV"
     gene            complement(1275..1490)
                     /locus_tag="VHF08_02715"
     CDS             complement(1275..1490)
                     /locus_tag="VHF08_02715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067592.1"
                     /translation="MHSLSKDDNDTSKQPPPADNSQTERIEDDINKLPTNKSKVIASK
                     ISKFASGFKIPDNKKQKLSKSKVHERD"
     gene            complement(2756..5482)
                     /locus_tag="VHF08_02720"
     CDS             complement(2756..5482)
                     /locus_tag="VHF08_02720"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin-dependent
                     ribonucleoside-diphosphate reductase"
                     /protein_id="HEX2067593.1"
                     /translation="MAGVTEFNDSKDNLIVNIKKRDGRVVNFTHSKISNAIYKALVVT
                     GKADYPLAERLANRVIEKMVQNGYGSTGKVAIASVEDVQDMVESILIEEGLSETAKAY
                     ILYRHERRKVRDEKMRILNKKVLDEVDKVFDINSLRVLAARYLLRDNNGEIIEGPKQM
                     FERVAILVALPDVLHDSQLFNLTGDHNQNIEEAEKYYAKIDDFDLKLKIGDYYLNKYH
                     FESLIRHYVSLAKIGRMKVGFKELLRMMAEGKLSVYEERIKEYYDLMVSRDFLPNTPT
                     LMNAGARLGQLSACFVLDMPDDMFKIMRSSTDAAMIFKSGGGVGINYSDLRPEGDIVA
                     STSGVASGPTSFMRIIDTITDVVKQGGKRRGANMGILEAWHPDIEKFITAKTKPGVFE
                     NFNVSVGVWEDFWKSLVNKDNHKYTLRNPRTHEPLKQIDSHQLIDLIAFSAWKSAEPG
                     VIFFDNINKYNPIINAKGGPLRATNPCGEQSLYPYESCNLGSINLANFVKRKADGMFE
                     FDWQKYEQAIRISSRFLDNIIDMNKYPVEEIDINTKLTRRIGLGIMGIADLLFLLRIP
                     YDSNDGYEFMYKLAEAVSYYSMEESVAIAKVRGPFPLFKETDYVKGKIPIAGYYELPT
                     ETHAYNWDSLIKKIQKHGIRNSWTSTIAPTGTLSMIADTSNGVEPMFALVFEKRVTVG
                     RFFYTNRIFENVLKENGLYNDEILAKIANNYGSVRGLAEIPEWIQKTFVTAIDVHWVD
                     HIMAQAVWQKWIGNAIAKTINMPGDVTAEDVKYAYLLSHELGLKGVTVYRDGSRHEQV
                     LHINGNETKEKKFITRPSKYAVDYIRANVKEPYIKDQIEKIFEQTKIKEEELPTETIS
                     TSILLDTPNKSIQAPLGESNEDNTCPSCKARLIITEGCNLCIECGFSSCVSG"
BASE COUNT         1740 a         1168 c          906 g         2134 t
ORIGIN      
        1 taactacaca tcgtgtattt ttatggactt ttctgccctt taatatacgt gctgctatct
       61 caagatcttc tatccttccg tttgtagaag aacctataaa agcctgatcg atttccattc
      121 cactgatttc tccaactgaa tgtactaaat ctggatgatc tggaccagcc accattggtt
      181 ctatcttacc acattctatc tctatcttct ctacatagtt agctgagctg ccaggctgaa
      241 tatcaatttc tggcacatct ttaataattc ttggattttc atttaaataa gttctagtca
      301 gctcatcagt aggaaatacg gaaatcttgg caccgcattc cattgaagca ttgcttatac
      361 atgctcttga gtcaacacta aactcttttc tggtattgtc atttgcatat gtccactcta
      421 aagccttata attggctcca tcttcaccaa cctttccaat ataatcaagt attagatctc
      481 tggcaaaaac acctttacta aaattgcccg ataatttaat ttttattgtt tctggtacgc
      541 gtagccaaat ttggcctgta gcccatacag ctgccatttc cgtacttcca attccagtgg
      601 caaatgccga aatacatcca gcttgacatg tatgagaatc tgcaccgagt atcatcatac
      661 caggaacagc aagatattca agaatatgct gatgagatat agatccttca actaacatac
      721 agctatgctt tgaagcgaaa cctctcatca tggcgtgtag atttgcgacc ttttcgtctg
      781 ctgcaggaaa tgtatgatct atgactagca aaacccttga agggttaaag agtttattca
      841 ctcgcatttc atttaatgaa cgtattgcca aaggacccgt actgtcttgt gccatagcaa
      901 gatccacatc tacaattgca atatcgccag ccatagaagg tttggacact tcgccctgct
      961 tattttttag tgttaagctt tttatgctaa ttgccttttc agcgaacgta agtgaactat
     1021 cctccagtat atttttaatg gaagaaacag aatgagagct gttttgctgt gctaatgact
     1081 gcatataagt tccaatccta atcagatatt ttaagcatca gtttttatta cttcatgata
     1141 agaaacttta cgcataatct agattctcta gattcacatt aacattttaa ctataattgc
     1201 aagatattgg aggaagatca gattagtaat actacggtta atgtcctaat ttcgcatcaa
     1261 agattgtata tatactaatc tcgctcatga acttttgatt tacttaattt ttgcttttta
     1321 ttatctggaa ttttaaatcc acttgcaaat ttgctaattt ttgacgctat aactttagac
     1381 ttgtttgtag gaagcttgtt tatatcatct tctattcgtt ctgtttgcga attgtctgct
     1441 ggcggcggct gcttgctagt atcattgtca tcttttgata gagaatgcat tattggatct
     1501 attatatagt tataatatat gataaatatt tggttaggta ccttatcaaa tgaaacatat
     1561 tatatcaaaa gcagagcctc tactcattgt tttctgtgaa tatcaataca catacacaca
     1621 atgacaattc ttcaaatagt aaccttgtaa tttttcatac aataatacac tattattata
     1681 gataatatac atgcaatccc aagatccagt tacatcattt atactttaac actaatggac
     1741 taacttgttg aaagattaag agattagaat ataaataatc tcccgttgca ttaataaata
     1801 aactacttct tgcataggtc cttagcacag atattttctc ttttattttt atcttctatt
     1861 gccatgtttc ttttagaatt cactgagccc tgcaagacat tgtaatgttt tattttctag
     1921 cgctgtttta ttgctcacaa attataaagc ggtattctaa attagagatt cattagccaa
     1981 atcaggttaa actaaagatg aactaagacg gtaatacttc ctattcggag cgtctaaatc
     2041 actttttcct catgattaat caaaccactg ttatctaatg cctgcaatgt aacaccgctt
     2101 gctgtcctac acctatctct tttgtcaatt gattaaaata agttcttggg agagaatagc
     2161 aagtattctc cttctagtat cattaccaat atcaagaatt aaattagaat ttattattgg
     2221 ttaagtcacc aaaaccataa taaattaaag caaaaagaaa gtagctagcg acgaatcgtc
     2281 attctttact ctacgtatca tatctagatg tcactggggc catagtcacg acaatatcct
     2341 ccactacttc atcgtctaca gatttgtaaa ctactaccat catcttggct gctggatgtt
     2401 aaacatcaat ttctcttaat attgttgcat catcatttgt aattggaaca tcccctaaag
     2461 aatctactaa taccttatcc atgtctatag gagtggggca tgtctgtatc acatcttgat
     2521 actgtttttt cctgcagaga tgttattctt tgtgctgctt gagtatcttt gtctctgtaa
     2581 tgcttccttt aaactagact ttggacttgt tgttgtagca acatgtttat ttttatctat
     2641 gttagtaact taaattgttt aattggaata aagttttttg ggtggcttat ggtagcattg
     2701 acagatgatg attattactt gctagtcatc cataatgagg gagtgttttt tgttttcatc
     2761 ctgaaacgca gctgctaaag ccgcattcaa tacacaaatt gcaaccttca gtgattatta
     2821 atcttgcttt gcatgatgga caggtattat cctcatttga ttcccctaaa ggtgcttgta
     2881 ttgacttgtt tggcgtatcc agcaatattg atgttgaaat tgtttcggta ggtaattctt
     2941 cttctttgat cttggtttgt tcaaagatct tttctatttg atctttgata tatggttctt
     3001 taacgtttgc acgtatatag tccacggcat atttgcttgg tcttgtaatg aatttctttt
     3061 cctttgtttc attaccattg atatgtagaa cctgttcatg tcttgagcca tctctgtata
     3121 ctgttactcc ttttaatcct agttcgtgtg acaagagata tgcatacttg acatcttctg
     3181 cagtaacatc ccctggcata ttgattgttt ttgcaatggc attgccaatc catttttgcc
     3241 atactgcctg tgccattata tgatcaaccc aatgtacatc tattgcagta acaaacgttt
     3301 tctgaatcca ttctggaatt tcagccaaac cacgaactga accataatta tttgcgattt
     3361 ttgcaagtat ttcatcattg taaagaccgt tttccttcaa cacattttca aaaatcctat
     3421 tagtatagaa gaatctaccg actgtcacac gtttttcgaa aactaatgca aacatcggtt
     3481 caacaccatt tgaagtatct gcaatcatag ataatgtacc ggtaggagca atagtcgatg
     3541 tccaagagtt tctgattcca tgtttttgaa tttttttaat taatgaatcc caattgtatg
     3601 catgtgtttc tgttggtaac tcgtaatatc ctgcgatagg tattttacct tttacataat
     3661 ctgtctcttt gaataaggga aatggccctc ttacctttgc aatagcaaca ctttcttcca
     3721 tactgtagta ggatactgct tctgccagtt tgtacatgaa ttcatagcca tcatttgaat
     3781 catatggaat tctaagtagg aatagcaagt cagctatgcc cattatgcca agacctattc
     3841 ttcttgttag ttttgtatta atgtcaattt cttctactgg atacttgttc atatctataa
     3901 tattatctaa gaatctggag gagattctta ttgcttgctc gtatttctgc caatcaaatt
     3961 caaacattcc atctgccttg cgctttacaa agtttgcaag attgatcgaa cctagattgc
     4021 atgattcata aggatataat gattgttcgc cgcatgggtt tgttgcacgc aaaggtccgc
     4081 cctttgcatt tataattgga ttgtatttgt taatattatc aaagaagata acacctggtt
     4141 ctgcactttt ccatgcgcta aatgctatta gatcaattaa ttgatgtgaa tcgatctgct
     4201 ttagaggctc atgagttcta ggattacgta gtgtatactt gtggttatcc ttgtttacaa
     4261 gcgacttcca aaaatcttcc cagacgccaa cactgacatt aaagttttca aatacgccag
     4321 gttttgtctt ggctgttata aatttttcaa tatccggatg ccatgcctct aatataccca
     4381 tatttgcgcc acgtctcttt ccgccttgtt ttactacatc ggttatagta tcaatgattc
     4441 tcataaaaga cgttggacct gatgcaactc cagatgttga agcaacaata tctccttctg
     4501 gtcttaggtc ggagtaattt attccaacac ctccacctga tttgaaaatc atggccgcat
     4561 cagttgatga tctcatgatc ttaaacatgt cgtctggcat atcaagaaca aaacaagctg
     4621 acaattgacc aagccgtgca cctgcattca tcaatgtcgg agtgtttggc agaaaatctc
     4681 ttgataccat caaatcatag tactccttga tcctctcttc gtatacgctc aacttgcctt
     4741 cagccatcat tctaagtagt tctttaaagc caactttcat acggcctatc tttgctagag
     4801 atacatagtg tcgaatgaga gattcaaagt gatatttgtt cagatagtaa tcgcctatct
     4861 ttaattttag atcaaagtca tctattttag cataatattt ctctgcttct tcgatgtttt
     4921 ggttatgatc acctgttaaa ttgaacaatt gagaatcatg caatacatca ggaagtgcaa
     4981 ccagaattgc tactctttca aacatttgtt ttggaccttc tatgatctca ccattgttat
     5041 ctcgtaacag ataacgcgca gctaaaactc taagggaatt aatatcaaat accttatcaa
     5101 cttcatcaag caccttctta tttaaaattc tcatcttctc atctcgaact ttgcgccgct
     5161 catgcctata caggatatac gccttcgccg tttcagacaa accttcttca atgagaatag
     5221 actctaccat gtcttgcaca tcttcaacac ttgcgattgc aacttttcca gtagatccat
     5281 aaccgttttg aaccattttc tctatcaccc tatttgccaa tctttctgct aatggataat
     5341 ctgctttacc agtcactaca agtgctttgt aaattgcatt tgatatctta gaatgcgtaa
     5401 aattaacaac tctgccgtct ctttttttaa tattcacgat taagttatct ttcgagtcat
     5461 tgaactcggt tacacccgcc atctctttct ttatgataga tttagtttaa aaagctagct
     5521 ctacatatta tatataattt tttattatga agcagtacta aaagtattac taactcatta
     5581 ctataatatc attcccatta tacaatatca gtgattaagt ataacaacct aacaaataga
     5641 acaaagtgta aggatgtcca ccatctataa attggttatg tcctggataa tgacactagc
     5701 aaataactat attactatgc ttaaaggcag ccaatttaaa atactaagct ttaaatctaa
     5761 aatattcttt tcaaccattt tatttctcta catagtatga gaatgataac tttatgttaa
     5821 tatctattgt atagtttacc tttatttgca aaagtatgaa aaataagttg cttaaattct
     5881 tgtttcaaat actctgtcga taccaagtaa attctaataa tgatattaaa agatacaagt
     5941 gcgcaaat
//
LOCUS       DATAAS010000168         3283 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3941526, whole genome shotgun sequence.
ACCESSION   DATAAS010000168 DATAAS010000000
VERSION     DATAAS010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3283
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3941526"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1850)
                     /locus_tag="VHF08_02725"
     CDS             complement(<1..1850)
                     /locus_tag="VHF08_02725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEX2067594.1"
                     /translation="MKSDKFNQFPYAMRNLNAKSFSLYYNDLARWLFITLTFTGLLST
                     GWFGIPLAPRYFLYNEIDIVAGLFSLFSALGAIWGVMAYREFSRSADIIKATRDLARK
                     LDPMIGDYEYRSYNPETREYENGYVPLGPVDFWDKETQVPNWLDKGKYWNILLGLQTG
                     NKEIMLQVVRDRELPFTTGRQNVAVTFKELLPGTGSFGKLRRRYRYRVKIPQWLVINT
                     ERVRFAEEKQRLNLNNIELSSFIADLNKKVVLAAAEIIEREKPRIQYPWRITALGIYL
                     NKSLPIRIIYRQVIRHFPGTKKRTVEETNENLANIKDDDLVAAIIQVALQKGISEHRI
                     ENIKILIRFLKNMYTKQGIGEGSSEYHNLHHSLEVTYISLQMLPKEFHGHRFNSKDYE
                     IILVAGLLHDYDPDQIYANTENNATQQPKGPKVQRTIAEICKTRIHDAYFTMSEVEFE
                     NYFREYKSALLPPLEYAATHPEYVKVGWRPSESKIVEALIWRTDFPYFKQKKAQEMFE
                     QLVSHLDKNGYDSIKIKLLAEILWLADLAVTYMGSDPIRAWDRVTNLYDELYLPKFEA
                     VSRTDAFFSDFVEIELFKELIRMRHFPDIFRQRWNLVYQFFHEGNPSTQL"
     gene            2491..2565
                     /locus_tag="VHF08_02730"
     tRNA            2491..2565
                     /locus_tag="VHF08_02730"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2526..2528,aa:Val,seq:gac)
BASE COUNT          994 a          596 c          541 g         1152 t
ORIGIN      
        1 ttcaattgtg ttgaaggatt gccttcgtgg aagaactgat atactaaatt ccatctttgt
       61 ctaaagatat cgggaaagtg tcgcatacga attaattcct taaaaagttc gatctcgaca
      121 aaatctgaaa agaatgcatc agttctagaa actgcttcaa actttgggag atataattca
      181 tcataaagat ttgtaactct gtcccatgct ctaataggat cagaacccat gtaagttacg
      241 gcaagatcag ctagccatag aatctctgca agtagtttta ttttaataga atcatatcca
      301 ttcttatcaa gatggctgac cagttgctca aacatttcct gagctttttt ttgtttaaaa
      361 tatgggaaat cagtacgcca gattaatgcc tctacaattt tgctttcgct aggcctccat
      421 ccaaccttga catattctgg atgggttgca gcatattcta ggggtggtaa taatgcggat
      481 ttatattcac ggaaataatt ttcaaattct acttcactca tcgtaaaata tgcatcatga
      541 attcttgttt tacatatctc agcgatagtt ctttgaactt ttggaccctt tggctgttgg
      601 gttgcattat tttctgtatt agcgtatatt tggtcagggt cgtaatcatg taaaaggcct
      661 gctacaagaa ttatttcata atcttttgaa ttgaacctgt ggccatgaaa ttctttgggt
      721 aacatttgca agcttatgta agttacttct aaactgtgat gtaagttatg atactcactt
      781 gagccttcac caataccctg tttggtgtac atatttttta ggaaacgaat aagaatctta
      841 atattttcta tcctatgctc agatattcct ttctgtaatg caacttggat tatagcggca
      901 accaaatcat catccttaat atttgcaaga ttctcatttg tttcctcaac cgtacgtttt
      961 tttgttcctg ggaaatgcct gataacttgt ctataaataa ttcgaattgg caggcttttg
     1021 ttgagataaa ttcctaacgc agttatcctc catggatact ggattcgagg tttttcgcgt
     1081 tctataattt cagctgcagc tagcacaact tttttgttaa ggtctgctat aaacgagctc
     1141 aattctatat tgtttaaatt caatctttgt ttctcctcag caaatctgac acgttctgtg
     1201 ttaattacta accattgggg tattttcact ctatatcggt agcgtctccg taatttgcca
     1261 aaagatccag tcccaggtag taattctttg aaagtaacag caacattctg tcggcctgtt
     1321 gtaaagggta gttcacgatc tcgtactact tgtaacataa tttctttatt gcctgtttga
     1381 agtccaagca gaatgttcca gtattttccc ttgtctagcc agtttggaac ttgagtttcc
     1441 ttatcccaaa aatctactgg cccaagagga acatatccat tttcatattc tcttgtttca
     1501 ggattataag aacggtactc ataatcacct atcatcgggt cgagtttacg tgcaaggtct
     1561 cttgttgcct ttattatatc tgcagaccta gaaaattcgc gatacgccat taccccccaa
     1621 atagcgccta gagcactaaa caaactgaat aaacctgcga caatgtcaat ctcattatat
     1681 aaaaaatatc taggagcgag tggaattcca aaccaaccag tagataaaag cccagtaaag
     1741 gttaatgtga taaatagcca tcgtgcaaga tcattataat ataggctaaa tgatttagca
     1801 ttaagattac gcatagcgta tggaaactga ttaaacttat cacttttcat attttgattc
     1861 tatcagctcc gaatttcaac gctttatgcc tgccgtatta aataaccgat taatagacga
     1921 ttatatattg tctacacttt ggaacgatat acttcgtagt ggctaataat aatatgcata
     1981 ttttattgag taaattataa acatgacatt cgatgcatca caatagtatc actgaaattt
     2041 tgtttaaatt agtttgcata cagccatttt tgcataattt ataatatttt caacttgatc
     2101 cttatatcta gtctcttttc aacatctggc ttatctaaaa gtcagggagt aatacgcaaa
     2161 ttatcttgat gtcttcttgt attaccaata attacttgta gacttccatc caccttaagt
     2221 taattgcttg tgtacaatga ataaaaaatt tgagggaaga gtatttctcg acagtttctt
     2281 tgcctattag ttagcgtcag aactttaata tcgataacca tttatggagc ggatctaata
     2341 ataacttgaa gttagcgaga aattgtttga tgacttgagg cttttatatt atttgaagga
     2401 attatgtcca agttcaaatg aaatatattt ttaactttat cgacgagtat atatttaggt
     2461 ccttgtgaaa agtttcaaat caaatacata gggccggtgg tctagcctgg ttaagatacc
     2521 gccttgacat ggcgggggtc gttggttcga atccgacccg gcccattttg ataacgatgc
     2581 ttatttacgg cccactccga tccacaaaac agagagcaag tttataatca tataaaataa
     2641 aataactttc cattaaacag aatatcctga tataaagtca atactaaatt gcactgcgtg
     2701 aatgtgttta catctgacgt gtcaatagat atagtcgtaa caggagcaac tgaagcctat
     2761 ttctgtatgc aaaatatcat attctccatt tcctgattgt gatttaactt tgtaggaatg
     2821 ttcgccagtc cttttcactt gatccaatgt tagagctatt ctttgtccct tttctttacg
     2881 attattttgt atttgtaaat tatgaagttt gtgcatatgt atctataatc gagtataaca
     2941 ggttcatgta tcagatagtt gaaaattgat tgaagctaca ttgtgctttc gttgcaaaat
     3001 atttaattgt tcaatctttt tctggattag accaagtgat cattcacttc aatgatatac
     3061 aaatgctata attcgatcta tatactgaca tactttaact aaataaaatt attgtaaaaa
     3121 atctttgctt tgcaaccttg tactcataat tatttgggaa tagatgtttt ctatcctaaa
     3181 ggtcaaacta cactgtatgt caacataaaa gaaattttct atagcacctg ctacctgagt
     3241 gtattgtcaa caataagtta agtacctcca ctatctccac tac
//
LOCUS       DATAAS010000169         2291 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4481994, whole genome shotgun sequence.
ACCESSION   DATAAS010000169 DATAAS010000000
VERSION     DATAAS010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2291)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2291)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2291
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4481994"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(269..832)
                     /gene="msrA"
                     /locus_tag="VHF08_02735"
     CDS             complement(269..832)
                     /gene="msrA"
                     /locus_tag="VHF08_02735"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008113 - peptide-methionine (S)-S-oxide
                     reductase activity [Evidence IEA];
                     GO_function: GO:0033744 -
                     L-methionine:thioredoxin-disulfide S-oxidoreductase
                     activity [Evidence IEA];
                     GO_process: GO:0006979 - response to oxidative stress
                     [Evidence IEA];
                     GO_process: GO:0030091 - protein repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEX2067595.1"
                     /translation="MNNNNSNTEIATLANGCFWCSEAIFRRLKGIKSVVPGYAGGIVK
                     NPSYDQVCTGKTGHAESIQIEFDPKVITFEKILDIFWHTHDPTTLNRQGNDIGTQYRS
                     AIFYHNQKQKEIAEKSKKELEKEGVYKDPIVTEITDFRNFYVAEDYHKNYYENHQNAP
                     YCNFVIDPKVKKLLLKYGNNVREEYIR"
     gene            complement(825..1214)
                     /locus_tag="VHF08_02740"
     CDS             complement(825..1214)
                     /locus_tag="VHF08_02740"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine-R-sulfoxide reductase"
                     /protein_id="HEX2067596.1"
                     /translation="MNYNKLTPEEERVIIRKATEAPFSGKYDNFYEDGTFICRRCNAP
                     LFSSKSKFDAGCGWPSFDESFQNAIKRVPDPDGIRTEIECANCGAHLGHEFLGEYLTD
                     KNTRECVNSLSIRFIPKEKELPKIIHE"
     gene            1655..2281
                     /locus_tag="VHF08_02745"
     CDS             1655..2281
                     /locus_tag="VHF08_02745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067597.1"
                     /translation="MLQQNIIVNCRLSKDIDNDNQDKEFTDSENTNSVKESQSIVKRK
                     EQQQEYYRHKILHLSDFNEAFELVKSTVEARYKMHRAGLSLVLQVMPTNLGAYHVLGS
                     NLIIANKRILDIIKKYKSNEEYNSYLFMVLVHEYLHSFGIIDELQVRKMTYTLIASLV
                     GEDHMATSMARYQPWSLFPELNLFHNNSFEQKFEVIRNFDKTTQSYIG"
BASE COUNT          762 a          375 c          357 g          797 t
ORIGIN      
        1 aaaataattt gaaacaatat cctacatggc atgaatactt tagaaagtat caacctccta
       61 cattaattgc atgggaaaaa aacgatattt tctttgggcc acagggtgca ttggcattcc
      121 agaaagatct taaagatgta gaattcacct attaaaaagt ggacatttcc cattggaaga
      181 agatttggat gtcagtgcca gcctaataaa acgcttttta ggcgagcgaa taaaataatc
      241 gtgagtattt gaacacacgt gctaggagct atctgatgta ttcttctcta acattatttc
      301 catactttag aagtagtttc ttcactttgg gatcaataac aaaattacaa tatggagcat
      361 tttgatggtt ttcgtagtaa tttttgtgat aatcctctgc aacataaaaa tttctaaaat
      421 cagtaatttc tgtcactata ggatctttgt aaacaccttc tttttcaagc tctttttttg
      481 atttctcagc aatctctttt tgtttttgat tatgataaaa gattgcagat ctgtattgtg
      541 tgccaatatc attgccttgt ctattaaggg tggttggatc gtgtgtatgc cagaaaatat
      601 caagtatttt ttcaaaagtt ataactttcg gatcaaattc tatctgaatt gattcagcat
      661 gcccagtttt acctgtgcat acttggtcat aggaagggtt tttcactatt cctcctgcat
      721 agccaggtac aacagatttg atgcctttga gccttctaaa gattgcttca ctacaccaga
      781 aacatccatt ggcaagtgtt gcaatttcag tgttgctgtt attattattc atgtattatt
      841 tttggcaact ccttttcctt tgggataaaa cgtatagata atgagttgac acattcgcgg
      901 gtgtttttat ctgtcaaata ttctccaaga aattcgtgtc ctaaatgagc accacaattt
      961 gcacattcta tttctgttct tattccatca ggatcaggta cacgctttat tgcattctgg
     1021 aagctttcat caaaacttgg ccatccacat ccagcatcaa acttgctttt agatgaaaag
     1081 agtggggcat tacaccttct acagataaat gttccatctt cataaaaatt gtcgtatttg
     1141 ccactgaaag gagcttccgt tgctttacga atgataactc tttcttcttc tggagtcagt
     1201 ttattgtaat tcatacttta taacttcctt actaggagat tttgaacttt ctattacctt
     1261 gtaccctata tattgttata tgattttcct tgtaatatca atattcaaat ttaattttta
     1321 tatatggatc atttaaatat tggatgtaaa acaaaagtat ctaattaaca atattcaaga
     1381 taatgtatat aatgaatttt aagctctttg tatatatgct ataaataatg taataacaat
     1441 acaatgaata cgacctagca gccaggtatt accaaaacaa tattctagct gataacctaa
     1501 atgcagtgtc tatttgacaa tattatgcct ttacacttta tggttaaagc tttgtttata
     1561 ttgaatttga gccgtcaact tacctaaatg ctattagata tctatattat cacttgataa
     1621 tttatatact tactaatgta tattaactaa cattatgcta caacaaaata ttatagttaa
     1681 ttgtaggtta agtaaagata ttgacaatga taatcaggat aaggaattta ccgatagcga
     1741 aaataccaat tcagtgaaag aatcacagtc aatagttaaa agaaaagaac aacaacaaga
     1801 atattaccgc cataaaatac tgcatctaag cgatttcaat gaagcatttg aattagtcaa
     1861 gtctacagtt gaagctagat ataagatgca tagagccgga ttaagcctag tacttcaagt
     1921 aatgcctact aatcttggag cttatcatgt acttggctcc aacttaatta tagcaaataa
     1981 gaggatcttg gatataatca agaaatataa atccaatgaa gaatataatt catatttgtt
     2041 tatggtatta gttcacgaat acctccatag ctttggcatc atagacgagt tacaagtcag
     2101 aaaaatgaca tacactttga ttgcttcatt agttggagaa gatcatatgg ccacaagtat
     2161 ggcaagatac caaccttgga gtttatttcc agaattaaat ctttttcata ataacagctt
     2221 tgaacagaaa tttgaagtca taaggaattt tgataagaca actcaatctt atattggata
     2281 atcaaattag t
//
LOCUS       DATAAS010000170         3113 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3943663, whole genome shotgun sequence.
ACCESSION   DATAAS010000170 DATAAS010000000
VERSION     DATAAS010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3113
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3943663"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(704..1363)
                     /locus_tag="VHF08_02750"
     CDS             complement(704..1363)
                     /locus_tag="VHF08_02750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit beta"
                     /protein_id="HEX2067598.1"
                     /translation="MQPQDSRYPDYIAEQIKKGTTTCALTCTDGVVLAADTRASAGFF
                     IADRHVMKIQKVDRHLGMTIAGGVADAQNLVDVMRYNANIYRISNREIMPVNSAARLC
                     SNVLFNQRYFPYYVQIILAGYDNKSGGQIYNIDLFGSMTSEKYISTGSGSPVAYGYLE
                     SEYKEGSSVNEAYKIAIQAVAAAIRRNSGTGDNINAVIIDKDGYRELSKEVKEAVGAV
                     Y"
     gene            1462..2886
                     /gene="leuC"
                     /locus_tag="VHF08_02755"
     CDS             1462..2886
                     /gene="leuC"
                     /locus_tag="VHF08_02755"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEX2067599.1"
                     /translation="MPKTLFEKIWDSHVIPTKKENNEGPFLIYVDRHLVHEVTSPQAF
                     DGLRLNNRKVRRPDLTFATMDHNVPTSDRSFPLIDQISSVQIQTLVQNCKEFGITLFD
                     IKNPNQGIVHIIGPELGITIPGTVIVCGDSHTSTHGAFGTFAFGIGTSEVEHVLATQC
                     LWLDKPKTFAINFTGRRKNPHAITAKDMILSVIRKIGTSGSVGTVIEYKGETIAELSM
                     EQRMTICNMSIEAGARAGLIAPDQITFDYIRGRTYAPKDEQFEKMVDFWRRNLKTDYN
                     APFDKSITVNINDLAPQVSWGTNPSMVIDVTSSIPYPEEFAKGNEHERKSALRALRYM
                     DLEPGTPITNIPIDRVFIGSCTNSRLEDLLEASVVIKGRKVSPKVRAMVVPGSQQIKM
                     QAERIGLDKIFKDAGFEWRESGCSMCLGMNPDILASGERCASTSNRNFEGRQGSGGRT
                     HLVSPVMAAAAAIQGHFVDVREWL"
     gene            2953..>3113
                     /locus_tag="VHF08_02760"
     CDS             2953..>3113
                     /locus_tag="VHF08_02760"
                     /inference="COORDINATES: protein motif:HMM:NF012897.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEX2067600.1"
                     /translation="MEPFRIIKSKATPLDMVNVDTDQIVPKQFLKLVQKSGYGRYLFY
                     DWRFDKDGRP"
BASE COUNT         1027 a          542 c          566 g          978 t
ORIGIN      
        1 atcaatgtac ccttctctat ggtgacttca gttcgctgta taaactgcag atctgaatgc
       61 tattataaaa cttaatcaaa atataaccgg gaatataaaa aatccaaatt attgttatat
      121 atatatttta taatataaca ataatttgga ttttttatat tcttggttat atttttgatt
      181 aagttttata atcgcattca gatctgcagt ttatacagcg aactgaagtc accatagaga
      241 agggtacatt gatagagatg cgccgtaaaa taacgaaata cttctaaagc gaaggaatta
      301 agttttactt tcctatctct tcatttatct ttcttcaatt cctaatttct ttctagatca
      361 aatcaaatta tataattatt tgataacttg tgctaatata ccctaataga taaaagaatt
      421 tgtgcaccca aatataaaac atataacaga atatgtatca ataattatat taaaaatata
      481 ttataattag tgttcaagaa tttaacatca ttgaacctgc caacaacaaa catagctttt
      541 ctttgcatta atcaccagga tatatttttt gtgacttatt gaagtataat gaatacgaca
      601 acatatctat aatacttcta attgattcta tttcttttat agtgagttaa taacttcttt
      661 ctagatattg agaaatataa gaaataatat ttctttagat ttgctagtag actgcaccaa
      721 cagcttcttt tacttctttc gataactcgc gatatccatc cttatctata ataactgcat
      781 tgatgttatc gccagtacct gaatttcgcc taatcgcagc agcaactgct tgtattgcta
      841 ttttataagc ctcatttaca cttgatcctt ctttgtattc ggattcaaga taaccatagg
      901 ctacaggaga gccactgccg gtagagatgt acttttcact tgtcattgaa ccaaagagat
      961 caatgttata gatctgtccg ccactcttat tgtcatatcc agctagaata atctggacat
     1021 agtatggaaa atacctttga ttgaataata cattagaaca gagtcttgct gctgagttta
     1081 caggcattat ttctctattt gaaatcctat agatgttcgc attgtaacgc ataacgtcaa
     1141 caaggttctg ggcgtctgcc acaccaccag caattgtcat acctaaatgt ctatcgactt
     1201 tctgaatttt cattacatgt ctatcggcaa taaagaaacc tgcactagct cttgtatctg
     1261 cagctaggac tacaccatct gtgcatgtca atgcgcaagt agtagttcct tttttgatct
     1321 gctcagcgat atagtcaggg tatctgctat cttgaggttg cattatataa gatagcagaa
     1381 tcaagaccaa atttaagcat tatcaatatc attaatagtt ctgcatatga ttatatttcc
     1441 gatataactt agtcgaatcg aatgccaaag acgctattcg agaagatttg ggacagtcat
     1501 gtaataccta ctaaaaaaga aaacaatgag gggccatttc taatatatgt agatcgccat
     1561 ttagtacatg aggttacttc tccgcaagcg tttgatggtc ttcgtttaaa taatagaaaa
     1621 gtgagacgtc ctgatctaac gtttgcaacc atggaccata acgtgccaac aagcgataga
     1681 tcatttccgt taattgatca aatttcttct gtacagattc agacattagt gcaaaattgc
     1741 aaggaatttg ggattacact ttttgatatt aagaatccaa accaaggcat agttcacatt
     1801 atcggtcctg agcttggcat cactattcct ggaacggtga ttgtttgtgg tgatagccat
     1861 acctcaacgc atggtgcatt cggtacattc gcatttggca taggtactag tgaagtagaa
     1921 catgttttgg ctacccagtg cctatggtta gacaaaccaa aaacatttgc aattaatttt
     1981 acaggtcgcc gtaaaaatcc acatgctatt actgctaaag atatgatact ttccgttatt
     2041 cgaaagatag gaacgtcagg gagtgtaggc actgttatag aatacaaagg cgaaacaatt
     2101 gccgaacttt ctatggaaca gaggatgacg atatgcaata tgtccattga agctggagct
     2161 agggcaggat tgatagctcc tgatcaaatt actttcgatt atatcagagg aagaacatat
     2221 gctcccaagg atgaacagtt tgaaaagatg gttgattttt ggcgaaggaa tttgaaaacc
     2281 gactataatg caccatttga taaatctatc actgtaaata tcaatgatct tgctccacaa
     2341 gtcagttggg gaactaatcc ttcaatggtc attgatgtca ccagttctat tccgtaccct
     2401 gaagaattcg caaagggcaa tgaacatgag agaaaatctg cattacgtgc tttacgatat
     2461 atggatcttg aacctggcac tcctattaca aatattccta tagatcgtgt gttcattggc
     2521 tcatgtacta actctcgact agaagatctg ctggaagcat cagttgtgat aaaaggaaga
     2581 aaggtgtcgc ctaaagttag ggcaatggta gttcctggct cccaacagat aaaaatgcaa
     2641 gcagaaagga taggtttaga caaaattttt aaagatgctg gctttgaatg gcgagaatct
     2701 ggttgtagta tgtgccttgg aatgaatcct gatattcttg catccggcga acgctgtgca
     2761 agtacttcta accgcaactt tgaaggaagg cagggaagtg gtggaaggac gcatctcgta
     2821 agcccagtta tggcagcagc agctgcaatt caaggacact ttgtagatgt aagagagtgg
     2881 ttataatgag aataaaactc tataatataa aaaagagata agaaagaata aaaaaatgga
     2941 gtaaattaaa taatggaacc ttttagaatt atcaaaagca aagcaactcc gcttgacatg
     3001 gttaatgtcg atacagatca aatagttcca aaacaatttc ttaaactagt tcagaaaagt
     3061 ggttatggtc gatatctatt ttatgattgg cgatttgata aagatggaag acc
//
LOCUS       DATAAS010000171         2320 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1296781, whole genome shotgun sequence.
ACCESSION   DATAAS010000171 DATAAS010000000
VERSION     DATAAS010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1296781"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(453..1328)
                     /locus_tag="VHF08_02765"
     CDS             complement(453..1328)
                     /locus_tag="VHF08_02765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2067601.1"
                     /translation="MIKEKMMMIKLRTPSPPQPQPQRSAIKRPVTKRINIEDTANIIL
                     FLAAFLGIWQLIFMLGIWPEVSLPSPLTVAQSFLNLIGDYSLLYGIAVTMWRLLVGFS
                     ISIAVGAAIGLAMVKFNGFGKTMSSFAVGLQSFPSIAWVPFAILLIGLNDFGILFVVI
                     MSSVFSVMISTYSGIRNISPIYIRAARNMGARGVSLFRHVMIPAATPSLITGIRQAWS
                     FAWHALIGAEMLITTLVGLGHILFVGREFQLMGQIIATMITIFAIGLLFDRFVFYKLE
                     EKVRAKWGLDQQNEQ"
     gene            complement(1258..2115)
                     /locus_tag="VHF08_02770"
     CDS             complement(1258..2115)
                     /locus_tag="VHF08_02770"
                     /EC_number="7.6.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2067602.1"
                     /translation="MSFLKAQSLEIKLQVKNLSKIYTRNDTSSHTVLNNINIDVKNGE
                     FVTIVGPSGCGKTTLLNILGGLENSSAGEIQIDGKIVNPLTPDRIVVFQEAALFPWLT
                     VLENVEFGLQIKGISKNERSKIAMHYIEMVQLSEFANAYIHQLSGGMKQRVAIARAFA
                     LNPSILLMDEPFAALDVKTRTMLHHQLLQIQKNNNKTILFVTHNINEAVYLGDRVIVL
                     SANDGNIKKEFIVDLPRPRSLDHPIIESITHAIIEESKQAADFHSDKREDDDDKIANT
                     IATAAAATT"
BASE COUNT          757 a          424 c          361 g          778 t
ORIGIN      
        1 gaatttgtga agagacgcta tcctgagtat tatcattaat actttctaca aatagtgagg
       61 atgaatcaga ataaaatata gaggatacta taactgcaac aattattatg gctgatatta
      121 ttaactttcc ttttgcattc atttaccatg ggaatagcaa cctatacata tattaccgct
      181 tacaaatatg cagattagaa atattatatg caataatatc atataatgcg acgcttacgt
      241 atttaatata ggttataata atcaaagtaa ggctaactca tatccactta taccaagttg
      301 gctcttttct tctataacag tagaatttgt cattacaagt attttttatt tatacaaaag
      361 attttattat cataaactat taaatgtaaa gagaataata gctagtgtag tttaaagtgt
      421 tgctctggtc ttgctattta atgcatccct atttattgtt cattttgctg atcaagtccc
      481 cacttggctc ttactttttc ttctagtttg tagaaaacaa acctatcaaa caaaagtcca
      541 attgcaaaga ttgttatcat tgttgctata atctgtccca taagttgaaa ttcccttcct
      601 acaaataaaa tatgtcctaa acctaccaat gttgttatca acatctctgc tcctatcaat
      661 gcgtgccaag caaaagacca agcttgtctt attcctgtaa ttaatgatgg agtagcagca
      721 ggtatcatga catgtctgaa caaagagact cctctagctc ccatatttct tgcggcgcgt
      781 atatagattg gcgaaatatt tctaattcca ctataagttg atatcataac tgaaaatact
      841 gaactcataa ttactacaaa taatatgcca aaatcattca aaccaatcaa caagatagcg
      901 aaaggaaccc atgcaatgct tggaaatgat tgtaatccta cagcaaatga actcattgtc
      961 tttccaaaac cattgaattt taccatagct aaacctattg ctgcccctac tgcaatagaa
     1021 atagaaaacc caacaagcag acgccacatt gtcacagcta taccatagag caatgaataa
     1081 tcgccaatta gatttagaaa tgactgtgca actgtaagag gagatggtag agatacctct
     1141 ggccatatcc ctaacatgaa aatcagttgc catatcccta aaaatgcagc taaaaagagg
     1201 attatattag ctgtatcctc tatattgatt ctctttgtaa ctggcctttt aatggcacta
     1261 cgttgtggct gcggctgcgg tggcgatggt gttcgcaatt ttatcatcat catcttctct
     1321 tttatcacta tgaaagtcag cagcttgctt tgattcttct ataattgcat gagtaattga
     1381 ttctataatt ggatggtcta aacttctggg tcgtggcaaa tcaactataa actctttttt
     1441 tatattaccg tcattagccg atagaactat aactctgtct cccaagtata ctgcctcatt
     1501 gatattgtga gttacaaaca gaattgtttt attgttattt ttctgaattt gtaataattg
     1561 atggtgtaac atcgttcttg ttttaacatc caatgccgcg aaaggctcat ccataagcaa
     1621 gatacttgga ttaagagcaa aagcacgagc aatagccact ctctgcttca ttccccctga
     1681 gagttgatga atatatgcat tagcgaattc tgataattga accatttcaa tataatgcat
     1741 ggcaattttg cttctttcat ttttggaaat ccccttgatt tgtaaaccaa attcaacatt
     1801 ttctaaaaca gtcagccatg gaaaaagagc tgcttcttgg aaaacgacta ttctgtcggg
     1861 tgtcagagga ttaactattt taccgtcaat ctgtatttcg ccggcagatg agttttcaag
     1921 tcctcctaat atattaagca aagtagtttt accacaacca gatggtccca caatagttac
     1981 aaattctcca ttctttacat ctatattaat attgttcaaa acggtatgtg aggacgtatc
     2041 atttctagta tatatcttgg agagattttt gacctgcagc tttatctcta atgattgtgc
     2101 tttcagaaat gacatagtgc taaaatatca actatacatt gttaatataa gtctggtcta
     2161 atatgcaaag gatgcaataa agatgtaatt ttagcatata aaatatgtgg tctcaggata
     2221 tgtttactcc tgctggtact attactacta cttttgatgt gatacgtatg catataatat
     2281 attcacataa ataaaaatca agtattgtat ccaatgagta
//
LOCUS       DATAAS010000172         3255 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5021547, whole genome shotgun sequence.
ACCESSION   DATAAS010000172 DATAAS010000000
VERSION     DATAAS010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3255
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5021547"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..693
                     /locus_tag="VHF08_02775"
     CDS             <1..693
                     /locus_tag="VHF08_02775"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2067603.1"
                     /translation="KEFAENNGATVIVCSRSIQNAERAAEQINGKAFAAEIDITNNSS
                     VRSFLQHVISNHNRIDILINNAGYPFDSGIWYKEFHMTTDDELDKIIEVDLKGSVRLS
                     KAVINYMLKDAIGGVIINISSTPAIVGHVQGAPYTLAKAAIIALTKHIAIEYGRNNIR
                     AYTLALGNIATEATFNSMSKENRKKAGEEASMKRWGKPEEVAKVAACLAGCNFSFTTG
                     NTIVIDGGTVLL"
     gene            706..1896
                     /locus_tag="VHF08_02780"
     CDS             706..1896
                     /locus_tag="VHF08_02780"
                     /EC_number="2.1.1.195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-5B (C(1))-methyltransferase"
                     /protein_id="HEX2067604.1"
                     /translation="MAYLEKSEHEEEEEEGLKLAEQEQELPFEIEEKRKQGKLRTGYT
                     TGTSAAAATKAALLALIYGRTVDTVVVSLPKEKQATIKVAWTRIEGRDSATSAVIKYA
                     GDDPDITDGAEICSTVSFSDEKDKILIDGGKGVGRITKPGLGLEIGKAAINPTPIKMI
                     EQSVQEVLANVPYLKEHGISVIISVPKGEELAKKTDNPRLGILGGISILGTTGIVLPY
                     STASFAASIRQSLDVSLASGTYTVVLTTGGRSEDFAKSILGKSLPDHSFIQIGDFAGY
                     AIKQCSNKKIHKAILAGFIGKLTKMAMGIKQTHVRGSHVNMDFMAKIAAECKSSESVI
                     QEIRGANTARHVSEIIKNNNVNGFFDLICRRVYEQMYEHSKRELEIKVIMFEFDGSIC
                     GQYP"
     gene            complement(2134..>3255)
                     /locus_tag="VHF08_02785"
     CDS             complement(2134..>3255)
                     /locus_tag="VHF08_02785"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024629.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEX2067605.1"
                     /translation="KVALFASLLYAVMPITWITRRILLDSILLPFVLSSILFAIYLGY
                     SNRKFVAILLSGISLGLAIFTKIPIVTMIPLVAFLIFMNSNKNFKMVSLWLIPVILIP
                     LIWPAHAAFFGQFDLWLKDVIWQIQRQNSGFSSIVMFFFLVDPVLLILSSAGIVFAAI
                     KKNYFLLLWIIPFLVFLSVIGFVQYFYWIPILPAFCIAAAVFMIHLLEKVTISKFKTM
                     LSFATISSIIIFGLVNNTLLITSDVSSAQYQASAFILKYIQEKNDDNNNYDVTLISSP
                     VYSWIFNYVFNKENVLTDYRELLYYPVQSKEILLIADPHFKSNIGSGRQLQDIYGNTT
                     LIRVFKGDVFDFDLNRYPYTSMAKNYEGSIIEIRIGQRR"
BASE COUNT         1164 a          509 c          645 g          937 t
ORIGIN      
        1 aaagaatttg cagaaaataa tggcgcaaca gtcattgtct gttcaaggag tattcaaaat
       61 gcagagagag cagctgaaca aatcaacggt aaagcttttg ccgcagaaat tgatataact
      121 aacaactcta gtgtaaggag ctttttgcag catgtgatct ccaatcacaa tagaattgat
      181 attctaataa ataatgcggg atatcctttc gatagtggaa tttggtataa agaatttcat
      241 atgactacag atgacgaatt agataaaatt atagaagttg atttaaaagg atctgtacga
      301 ctatctaagg cagttatcaa ttacatgcta aaagatgcaa taggaggagt aataattaat
      361 atatcttcaa ctcctgctat agtgggacat gttcaagggg cgccttatac tttagctaaa
      421 gctgcaatta tagcattgac gaaacatatt gcaatagagt atggaagaaa taatattcga
      481 gcttatactc tggctcttgg taacatagca acagaggcaa cattcaattc tatgagtaaa
      541 gaaaatagga agaaggccgg tgaagaagca tcaatgaaaa ggtggggaaa accagaggaa
      601 gttgcgaagg tcgctgcctg tctggcaggt tgtaactttt catttacaac aggcaataca
      661 attgtaatag acggtggcac tgtattattg tagtggggtg actagttggc atatcttgaa
      721 aaaagcgaac atgaggaaga agaagaagaa ggattaaagt tagctgaaca agaacaggaa
      781 cttccttttg aaattgaaga aaagcgaaaa caaggcaaac tgaggacagg ctacactacc
      841 ggaacttcag cggctgcagc taccaaggca gcacttttgg cattaatata tgggagaact
      901 gtcgatactg tagtagtttc attacctaag gaaaaacagg caacaattaa agttgcatgg
      961 acaaggattg aaggaagaga ttcagctaca tctgctgtta taaaatatgc gggagatgat
     1021 cctgatataa cagacggagc cgaaatttgt tccactgttt ccttttcaga tgagaaagac
     1081 aagatactta tcgatggagg taaaggtgtc ggtaggataa caaagccagg attagggctt
     1141 gaaattggaa aagctgcaat taatccaaca ccaataaaaa tgattgaaca atctgtccaa
     1201 gaggtgctgg ctaatgtgcc ttatctgaaa gaacatggta ttagtgtaat catttcagtt
     1261 ccgaaaggag aagaacttgc taaaaaaact gataatccta gattggggat attaggagga
     1321 atctcgatac ttggcactac cggaatagtt ttgccgtatt ctaccgcatc ttttgctgcc
     1381 tctatccgtc agagtctaga tgtctctctt gcatcgggca cctatacagt ggtcctaact
     1441 acaggaggtc gtagtgaaga ttttgctaaa tcaatactag gtaaatcatt acccgatcac
     1501 tcctttatac agataggaga ttttgctggc tatgctataa agcaatgctc aaataaaaaa
     1561 attcataaag ctatcctagc gggattcatt ggaaaattaa ctaagatggc aatggggatc
     1621 aaacaaactc atgtaagggg atcgcatgta aatatggact tcatggcaaa gatcgccgca
     1681 gaatgtaaat cttctgagtc agtcatacaa gagataagag gagcgaatac cgcgaggcat
     1741 gtctctgaga taataaaaaa taataatgtc aatggatttt ttgatttgat atgtagaaga
     1801 gtttatgaac agatgtatga acattctaaa agggaattgg agataaaagt aattatgttt
     1861 gaattcgatg gtagtatatg tggccagtat ccataaaata tgcatatata tgagtgttat
     1921 aaatataatc tgcttctatg tcgtaactga cagagggttg ttctaacgtt cttcgaagaa
     1981 tagttccatt aattttgaac tttcattaaa tattaaatat cattggaaag gcatccgatg
     2041 agtgtttatg tatgtattta tgttagcata tagattaaca tatttattag aaatatgatg
     2101 ttataaatta taaattaaat tttatcaact aacttaacgt cgttgtccta ttcttatctc
     2161 tattatactg ccttcataat ttttagccat gctcgtgtaa ggatacctat tcagatcaaa
     2221 atcgaataca tcacccttga agaccctgat taatgttgta tttccatata tatcttgtag
     2281 ttgtctgcct gaaccgatat ttgacttgaa atgagggtct gctatcaaaa gaatctcttt
     2341 actttgtaca ggataataaa gaagctctcg atagtctgta agtacattct ctttattaaa
     2401 tacataatta aatatccaag aatagactgg acttgaaatc agggttacat cgtaattgtt
     2461 gttatcatca tttttttctt gaatgtattt gaggataaat gcagatgcct gatactgggc
     2521 tgatgagaca tcagaggtta ttaacaaagt attatttact aatccaaaaa ttattatgct
     2581 tgaaattgtt gcaaacgata acattgtctt aaatttcgaa atcgttacct tttctaatag
     2641 atgtatcata aatacagctg cggctatgca aaaagccggt agtattggta tccaatagaa
     2701 gtattgtaca aagccaataa ctgataggaa taccaaaaat gggattatcc atagcaaaag
     2761 gaaataattc tttttaattg ctgcaaaaac aattccagca gaactcaata ttaacaaaac
     2821 tggatcaaca aggaaaaaaa acataacgat agaactaaat ccgctattct gccgttgtat
     2881 ctgccatatc acatctttca accaaagatc gaactggcca aaaaaggctg catgagcggg
     2941 ccagatcaat ggaattaaaa tgacaggaat tagccataaa ctaaccatct tgaaattctt
     3001 gttgctattc ataaagatta gaaaggctac taacggaatc attgtaacta ttggaatctt
     3061 tgtgaatata gctaaaccta atgaaattcc tgataacaaa atagcaacaa atttacgatt
     3121 tgaatatcca agatagattg caaaaagtat tgaagacaaa acaaatggca aaaggattga
     3181 atctagcaat atccgtctag tgatccatgt tattggcatt accgcgtaca gaagagaggc
     3241 aaaaagcgca acctt
//
LOCUS       DATAAS010000173         1638 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_164087, whole genome shotgun sequence.
ACCESSION   DATAAS010000173 DATAAS010000000
VERSION     DATAAS010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1638
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_164087"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..669)
                     /locus_tag="VHF08_02790"
     CDS             complement(<1..669)
                     /locus_tag="VHF08_02790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067606.1"
                     /translation="MSGNINRELKIKDEGYFRNFDLVIAIIEKRYDSAIKYHSNETFD
                     SYYNILMRENLLKQFSLKEKCRIDWIRFYPIEIKSDNDVLDERLRNQILNAILTFGRS
                     VLILDEGHCRKTKINRTLRLLPTTIIGYTGKDDSFEVLSVFDRLVTNGPFNISKRGLA
                     RLLIDNGMVDIKPEKIYRCLSQIQRINQKLAFNEFYDEKMKFAKDEIEFIKKLIGIDT
                     ISDRR"
     gene            complement(831..>1638)
                     /gene="trpA"
                     /locus_tag="VHF08_02795"
     CDS             complement(831..>1638)
                     /gene="trpA"
                     /locus_tag="VHF08_02795"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEX2067607.1"
                     /translation="HNRVNKRFKELLKRNECGLICYIVGGYPDLDTTEEIAYTLINGG
                     ADMIEIGIPYSDPIADGPIIQEASFHSLLNGVTPDLCLEISKNIRKKFPHIPIIAMTY
                     SNIVLRRGLHEFMLKSRNCGIDGFILPDMATEEADFYTTEAAKLGLVTIFLASPDTTS
                     NRLEYIVSKCSGFVYMVSVYGVTGVRESFDDSTLYAIKNIKQVVGSRLPVAVGFGISN
                     PSHAKLMVHAGADAVIVGSAIIKKIKDNEDKKKMLQELEFFTSTMKRACL"
BASE COUNT          502 a          310 c          245 g          581 t
ORIGIN      
        1 ccttctatct gaaatagtat caatgcctat cagctttttt ataaattcta tttcgtcctt
       61 cgcaaatttc atcttttcat cgtaaaactc attaaaagca agtttttggt ttattctttg
      121 gatctgtgaa agacaccggt atatcttctc tggtttaata tctaccattc cattatcaat
      181 taaaagcctt gcaagtcctc ttttagagat gttaaacggt ccatttgtaa ctaacctatc
      241 aaagacggaa agtacttcaa aactgtcatc tttgccagta taaccaatta tggtagttgg
      301 aagcaatcgc aatgttctgt taatttttgt tttcctacaa tgaccttcgt ccaaaatgag
      361 tacagatctt ccaaaagtta gaattgcatt gaggatctga ttgcgaaggc gttcgtctag
      421 aacatcgttg tcagatttga tttcaattgg ataaaaacga atccaatcaa ttctgcattt
      481 ttcttttagt gaaaactgtt ttaataggtt ctctctcatc aaaatattgt aataactatc
      541 aaatgtttca tttgaatgat attttatagc agaatcatag cgcttctcaa ttattgcaat
      601 cacaaggtca aagtttctaa aatacccctc gtcctttatt tttagctctc gatttatgtt
      661 gcctgacatc tcaggaaaga tattgttttt aatatgcccg gaaaatatag aacttatgaa
      721 gagtgactta agatcctttt ccttcacaac taattgacta gtcgagggat tatttaattt
      781 ctaatatata agatataata tagacattac atgaaacaga taactcttgt ctatagacaa
      841 gctctcttca tagtgctagt aaagaattct aattcttgta gcattttttt cttatcttca
      901 ttatctttta tcttctttat gattgcactt ccaactatta cagcatcagc gcctgcatga
      961 accatcaatt tcgcatgaga agggttactg ataccaaagc cgacagccac tggtaagcgc
     1021 gaacctacaa cttgcttaat attctttatt gcatataatg tagaatcgtc aaatgattcg
     1081 cggactcctg tgactccgta tacagatacc atgtatacaa atcctgaaca tttagataca
     1141 atatattcaa gcctattgga ggttgtatcc ggagaggcca aaaatattgt tacaaggcca
     1201 agtttcgctg cttccgttgt gtaaaaatca gcttcttccg tagccatatc tggtaaaata
     1261 aatccgtcga ttccacaatt ccttgatttt aacataaatt catgaagacc tcttctcaat
     1321 acaatatttg aatacgtcat tgcaataatc ggaatatgag ggaatttctt tcgtatgttt
     1381 tttgatattt ccaaacatag atcaggtgtc actccgttta atagagaatg aaaagatgct
     1441 tcttgaataa tcggtccgtc tgcaatagga tcagaatatg gaattccgat ttctatcata
     1501 tcggctccac catttatcaa agtgtaggct atttcttctg tagtatctaa gtcaggatat
     1561 ccgccgacaa tataacaaat cagaccacat tcatttcttt ttaataattc tttaaatctc
     1621 ttatttactc tgttatgt
//
LOCUS       DATAAS010000174         4218 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3951164, whole genome shotgun sequence.
ACCESSION   DATAAS010000174 DATAAS010000000
VERSION     DATAAS010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4218)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4218)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4218
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3951164"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..231
                     /locus_tag="VHF08_02800"
     CDS             <1..231
                     /locus_tag="VHF08_02800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067608.1"
                     /translation="VNMNIENGCFTLDDGKQYCNNENNKLRFFINGNETESINDYVIN
                     PNDRLLVLYGNENADQINQELAALQEAQIRET"
     gene            739..1596
                     /locus_tag="VHF08_02805"
     CDS             739..1596
                     /locus_tag="VHF08_02805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HEX2067609.1"
                     /translation="MDISINTKIVHKLFVVEINIIVSALAGVGSFFSPCILPILPAFI
                     SYLSGTTLHEVQNSNNNNTITTTTSGGSAGAAAAAAKQSLTVKRSTRLNIFLNTVYFV
                     LGFSLVFAVLGVILNSVLVTVGIGFQSALQSIGGVVIVLFGAYLILSTKLRRLNFEKK
                     MTKLPRFKTSYITSFVFGAAFAAGWTPCVGPILGSTFTLAATAPGAAYNSLLAYSLGL
                     GIPFLITGAFFSQATGLIRRMVKYLKYFNPIMGAVLIILGILVFTNQLALLGNFPLAN
                     QIINLERGF"
     gene            1603..2790
                     /locus_tag="VHF08_02810"
     CDS             1603..2790
                     /locus_tag="VHF08_02810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEX2067610.1"
                     /translation="MNRDNISALIMAIAVVSLITGFAIYFNSPYLNKAASSEQQESNF
                     IPASIENKNGSTISQIDKSQFKKAPDFAKITGYINTEEGRPINLKDLKGKVVLVDFWT
                     YSCINCIRTLPYLVDWNEKYADKGLVIVGVHSPEFEFEKNVDNVKAAVQKYGIKYPVI
                     QDNDKGTWDAYQNRYWPRKYLVDNEGYIRYDHIGEGGYAETEKVIRSLLAERAAQTGI
                     SAINLDTNTNTTTPKNVQTVDFTKVKTPELFFGYEFARAPLGNSEGFRPNQTVTYSIP
                     QRSDLKPNTIYLIGDWKNNADNMELQSDTGRIALAYSAKSVNIVAGGKGEGGGEELSI
                     SENGVALTNKSGRGIDLSEQGKLVVDGQRLYNIVMHEGYDWRSLIIDVKGKGFQIYTL
                     TFG"
     gene            2791..3084
                     /locus_tag="VHF08_02815"
     CDS             2791..3084
                     /locus_tag="VHF08_02815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067611.1"
                     /translation="MSSAMTILMDISAIISLANVSILLALLTVYVKIYKNTRAIFTVG
                     LMFFASMLMLHNLIAVYAYFAMAPLYAEGLLPYFLGVHIAELAGIGALLKVTL"
     gene            3384..4088
                     /locus_tag="VHF08_02820"
     CDS             3384..4088
                     /locus_tag="VHF08_02820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067612.1"
                     /translation="MSNNKKELILFGIVISGVLVASSSLSISGQLIQEVQAQNMTSQL
                     TTNATSTQTDMGTTTTTTTTAPSPCCPSNGHIANAGSDQTVLEGTIITLNGSNNSNKI
                     SNIENTAKYLWRQTAGPSIILNGNNTAHPNFVAPNYPNDTKYTFALEVFEDQVINNNN
                     QTGAAIDTVDIIVKDANIEAKNPGTFQEEDDNTTEQFNQNELQDEEEGGEEEQSDNDV
                     NEDEDDDDEEEGNEDE"
BASE COUNT         1505 a          671 c          772 g         1270 t
ORIGIN      
        1 gtcaatatga atattgagaa tggatgcttt acattagatg atggaaaaca gtattgcaat
       61 aatgaaaaca ataaacttag attcttcata aatggaaatg agacagagtc aatcaacgat
      121 tatgtaatta accctaacga tagattattg gttctctatg gcaatgaaaa tgctgatcag
      181 ataaaccaag aacttgctgc attgcaagag gctcagatta gagaaactta ggaggcattt
      241 tttattgctt ccttgtatat atatcttcat ttaaattttt ttagcttcac atataatgat
      301 gatttagtaa agaacaatgg aattatcaga taatacaaca gaaatactaa tcgaacaatt
      361 atgtatattc aagcacaatg aaagcttttg attttataag agaagagtgt caaaaattgt
      421 tatcttgctc tgacattatg cctatgctat gatgtatggc tatgatgtag caatcgataa
      481 ttcttctggc agattacaaa tcagataaaa ctctccaaag tagtgagctt gaagttttct
      541 agcactctag actttcaatc gggactgcaa aagatagaca gcaaacaatc agtagcttct
      601 tctaaaagga gcttatcaag tcaaatgcaa gcattatttc tgcaataatc catcacagat
      661 gatatagtat atgtaataac tatgctttct ttctatgtaa caagtcaaaa aggaatttgg
      721 atgtaatacg gacacaatat ggacataagt attaatacaa aaattgtgca caaactattc
      781 gtggtagaaa taaacattat agtttctgca ctagcaggag tgggttcttt cttctctccg
      841 tgtattcttc caatacttcc agcatttata tcgtatttgt caggaacaac tctccatgaa
      901 gttcagaaca gcaataataa taatacaatt actactacta ccagcggagg atcggcagga
      961 gccgcagccg cagcagcaaa acaatcgcta accgtcaaga ggtcaacgag actaaacatt
     1021 ttcttaaata ctgtttactt tgttcttggt ttttcacttg tatttgcagt gttaggagtt
     1081 attctaaata gtgttcttgt cacagttgga attggctttc aaagtgcgct ccaatcaatt
     1141 ggaggagtgg taattgtatt atttggcgca tatctaattt tatctacaaa attaaggaga
     1201 ctgaactttg agaaaaagat gacaaagtta cccagattta aaacaagcta tattacatca
     1261 tttgtttttg gagctgcatt tgcagctggc tggactcctt gtgtaggtcc aattctaggt
     1321 agcacattta cattagcagc tactgcacct ggggctgcat acaattcact attagcttac
     1381 tctttaggct tgggcatacc atttctaatt actggtgctt tcttctcaca agctacgggt
     1441 ttaatcagaa gaatggtaaa atacctaaaa tatttcaatc ccataatggg tgcagtgctg
     1501 ataatattgg gtatactagt attcactaat caactggctt tactaggcaa ttttcctcta
     1561 gctaatcaaa ttattaattt agagagagga ttttgattta taatgaatag agataatatc
     1621 agtgcgttaa ttatggcaat tgcagtagtg tcccttatta ctggctttgc gatatacttt
     1681 aacagcccat atcttaataa agctgcatca tctgaacaac aggaatcaaa ttttattcca
     1741 gcatcaatag aaaacaaaaa tgggagtacc atatctcaga ttgacaaatc ccagttcaaa
     1801 aaggcacctg attttgccaa aattacaggt tacataaaca cagaagaagg acgaccaata
     1861 aaccttaaag atctaaaggg aaaagttgta ctagttgact tttggacata tagctgcatt
     1921 aactgcatac ggactcttcc atatctagta gattggaatg aaaaatatgc tgacaagggg
     1981 ttggtaatag ttggtgttca ttcgcctgaa tttgaatttg agaaaaacgt tgacaatgta
     2041 aaggcagctg tacaaaaata tggaataaag tatccagtca tacaagataa tgacaaagga
     2101 acttgggatg cctatcagaa tagatactgg ccaagaaaat atctagttga taatgaagga
     2161 tacataagat atgatcatat aggtgaaggt ggttatgctg aaactgaaaa ggtaattcga
     2221 tcattgcttg ctgaacgtgc tgctcaaaca ggtatatctg caataaatct agacacaaat
     2281 acaaacacaa ctacacctaa aaatgttcag actgtagatt tcacaaaagt aaagacgcct
     2341 gaactcttct ttggatacga gtttgctaga gcgccacttg gaaattctga aggcttcaga
     2401 ccaaatcaaa ctgtaacata ctctattccc cagcgttctg atcttaaacc aaacaccata
     2461 tatcttattg gtgactggaa aaataacgca gataatatgg aattgcaaag cgatactggt
     2521 cgtattgcat tagcttactc tgcaaagtca gtaaacatcg tagcaggagg aaaaggagaa
     2581 ggaggaggag aagaactttc aatctctgaa aatggagtag cgctaacaaa taaatcagga
     2641 agaggaatag atctatcaga acaaggtaaa ttagtagtag atggacagag attatacaac
     2701 atagttatgc atgaaggata tgactggcgc tcacttataa tagatgtaaa gggcaaagga
     2761 ttccagatat atacacttac ctttggttag ttgtcatctg ccatgactat cttgatggat
     2821 attagtgcaa taataagtct ggcaaatgta tctatcttgc tagctttatt gacggtatat
     2881 gtaaaaatct acaagaatac tagagcaatt ttcaccgtcg gcctcatgtt ctttgcaagc
     2941 atgctaatgt tacataattt aattgcagtc tatgcttatt ttgcgatggc tcccttatat
     3001 gcagaaggat tactaccata ttttttagga gtgcatatag cagaacttgc aggaatagga
     3061 gctttgctga aagttactct ttaaagttgt ttatatcatt tagattaaat agatcttttt
     3121 gtttttattg attatattat attatatgat aatttggaat agattagatg ttctttctga
     3181 tataatgatc agttatttta ttgagagaaa ctaacgttta ataattacat agaaaataac
     3241 ttcttgcaaa ttgggagtat attgggcaaa taaacatttt gctctaactg aatttgtaac
     3301 caatcgtttt atattccata gatggattaa tatatttatg attaaagtac aaacttattt
     3361 cttgtctaat aacatgatct cttatgagta ataataagaa agaattaatt ctttttggca
     3421 ttgttatttc aggcgtactt gtagcgtcat cgtcattatc gattagtggt caattgatac
     3481 aggaagtaca agcacaaaac atgactagtc aactaacaac taatgcaaca tctactcaga
     3541 ctgatatggg cacaacaaca acaacaacaa caacagcacc atcgccatgc tgcccttcta
     3601 atggacatat tgctaatgct ggttcagatc aaacagtgtt agaaggaaca ataattacat
     3661 tgaacggcag taataatagc aataaaatca gcaatattga aaatacggcc aagtatttat
     3721 ggagacaaac agctggtcct tctatcatat taaatggtaa caatactgcc catccaaact
     3781 ttgttgctcc aaattatcct aacgatacaa aatatacatt tgcattagaa gtatttgaag
     3841 atcaagttat taataataac aatcaaacag gagcagctat agacacagta gatataatag
     3901 taaaggacgc taatatagaa gctaaaaatc ctggaacatt tcaagaagaa gatgataata
     3961 ccacagagca attcaatcag aatgaactac aagatgagga agaaggagga gaagaagagc
     4021 aatctgataa tgatgttaat gaagatgaag atgatgatga tgaagaagag ggtaatgaag
     4081 atgagtagta gtaaaaaaga agatgaagac gctaatacta agactcttct aacattgcca
     4141 aatatccggt atcttgtaga aggattagat gctttactat atactaatct tgacggagat
     4201 aaacgagcaa aggttatc
//
LOCUS       DATAAS010000175         3886 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4490150, whole genome shotgun sequence.
ACCESSION   DATAAS010000175 DATAAS010000000
VERSION     DATAAS010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3886
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4490150"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(12..106)
                     /locus_tag="VHF08_02825"
     tRNA            complement(join(12..74,97..106))
                     /locus_tag="VHF08_02825"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(48..50),aa:Gln,seq:ttg)
     gene            complement(146..1243)
                     /locus_tag="VHF08_02830"
     CDS             complement(146..1243)
                     /locus_tag="VHF08_02830"
                     /inference="COORDINATES: protein motif:HMM:NF015940.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF354 domain-containing protein"
                     /protein_id="HEX2067613.1"
                     /translation="MQFSQLINLRVWFDILTPKQVMFFKPAIELFKEAGHESLCTSRE
                     YREVVELSKIKQLPLKIVGRHGGAGKYEKLCESANRIFELAHMVKQFEPDIAISFSSP
                     EAARVAFGLGVNHIGFNDSPHAEAVARLTIPLIDHLFSPWVIPYSAWNIFGIPKTRIT
                     RYRALDPVVWLKRNPISSSTLTSNLINEIGLETSKKNVLIRLEETKASYIADKKIENS
                     ISMVDAIVDNLSVATNIIILCRYEDQIAELTKRYDGKAYIVQNVLEGTLLISLADLFI
                     GAGGTMTAEASLLGKPAISIAPVRFYVEKYLINSGLVKRANSSRDIVRLSNKMLSDKH
                     YTTTQENRARHILESMDDPIDKMFSFITNLA"
     gene            1327..2523
                     /locus_tag="VHF08_02835"
     CDS             1327..2523
                     /locus_tag="VHF08_02835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067614.1"
                     /translation="MSAGSESSTTITAAVYGLSTEGYRIASSIAIKGSKVSLIDESAR
                     MAITLKPDIARIYPDVSALIEDEPLLGLEPIDVAISDAAYIFFAPRIRKIGQEVKSDV
                     TSKFRDAIRALKRGSSIIYTLPTGIGGSNENIALIEHITGMSVGKDIFYYYMPINTDD
                     IIASETLIGSLKSRQDTHITKMLCDPNMHGKLNYVNVISAEFVHSIKILGHYTGMASI
                     LEICKNTHDANSRKEVMHHGYSDIYLDDVANGLYDLRAISSSLSGAGPLMYLVNGTLK
                     AIEGYIKHLIDEIRDILRKRDLKASRTKVAIAWTLDPNEMRGDKIELLSSLESRLKDY
                     IGDVERQQGVAFDLYPSDKTMIVLACSKYDFAKVMSKNKQNSDFILMKANPACETAVD
                     KVSSEK"
     gene            complement(2694..3245)
                     /locus_tag="VHF08_02840"
     CDS             complement(2694..3245)
                     /locus_tag="VHF08_02840"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016746 - acyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEX2067615.1"
                     /translation="MQDHHKSNNGTNSHSSNYTNPPGVTNYISTTARIGKNVKIWHFA
                     YVGDNTVIGNNVMIGSLTHVDYKVKIGDNTRIEGSVYIPPLTSIGKNVFIGPGATFTN
                     DPYPMSRKMVGVIVEDDAIIGSRAAILPGVRIGTNSIVAMAAVVTKNVPPNVVVMGHP
                     AKARYSRSEYDKKKTDWESNNSH"
     gene            complement(3290..3595)
                     /locus_tag="VHF08_02845"
     CDS             complement(3290..3595)
                     /locus_tag="VHF08_02845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Trm112 family protein"
                     /protein_id="HEX2067616.1"
                     /translation="MKKSMLDILACPIDKHYPLELFEINIKKYNYNNDNHNNSDIVIS
                     EGILFCSKCSRYYPIIEEIPVMLPDELREKQTDIDFLQRWSDKVPEKIIKHGNPWHL"
     gene            complement(3599..>3886)
                     /locus_tag="VHF08_02850"
     CDS             complement(3599..>3886)
                     /locus_tag="VHF08_02850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEX2067617.1"
                     /translation="PKKVRKFSAVCTDGIIAGDFITQEITIDQEDCTIIPRRQQFQEP
                     LTLELQSLFDAIDGKISKPFISAIDATNVTRVAEAALLSSNTGSPIYLDLK"
BASE COUNT         1202 a          709 c          698 g         1277 t
ORIGIN      
        1 aaaagaaaac ttagcccggc ccagattcga actggggtca aaggctccaa aggcctctat
       61 gcttggccac tacattcgac ggaatttcac tttcctctac cgggcttccg ggcatatttt
      121 cgtatatttt actatcttta gaatgttacg caagatttgt tataaatgaa aacatcttat
      181 caatgggatc atccatactc tcaagtatat gcctagctct attctcttga gtagtagtat
      241 agtgtttatc tgatagcatc ttgttactta atctaacaat gtctctagaa ctattagcac
      301 gttttacgag acctgagttg atcaagtact tttcaacgta aaagcgaaca ggagcaatag
      361 agatagcagg ttttccaagt aatgatgctt cggctgtcat tgtccctcca gcccctatga
      421 ataagtcagc taatgatatt aataaggtac cctcgagaac attctgcaca atatatgctt
      481 ttccatcata tctttttgtt aattcggcta tctggtcttc atatctgcag agaataatta
      541 tgttagtcgc cacagataga ttatcgacaa tagcatcgac catagagata ctgttttcta
      601 tctttttgtc tgcgatatag gaagcttttg tctcttctaa tctaatcaaa acattctttt
      661 tcgatgtttc aagaccgatt tcattgatca aattggatgt caatgttgat gaagatatag
      721 ggttccgttt gagccacaca acaggatcta atgctctata tcttgttatc ctagtttttg
      781 ggatcccaaa tatattccat gcagaatacg gtataaccca aggagaaaaa agatggtcta
      841 taagtggtat tgtaagtctt gcaacggctt cagcatgggg ggaatcatta aatccaatat
      901 gattgactcc aagtccaaat gcaactctag ccgcttcggg cgatgaaaaa gatatcgcaa
      961 tatcaggttc gaattgcttt accatatgag caagttcaaa tatcctatta gcactttcac
     1021 acagtttttc gtattttcct gctcctccgt gtcttccaac aattttaaga ggaagctgct
     1081 taatctttga tagctctact acttctctat attcccttga tgtgcataat gattcatgac
     1141 cagcttcctt aaacaattct attgcgggtt taaaaaacat tacctgtttt ggtgtcaaaa
     1201 tatcaaacca aactctcaag ttaatcaatt gagagaattg caatggaaaa accttttctt
     1261 taaccctcct ttagatagct aaggagatcg aggctatgcg catatggaga ggggtcatta
     1321 tataatttga gcgctggatc agagtcatca acaacaataa ctgctgcagt atatgggcta
     1381 agtacggaag ggtaccgcat tgcctcttct attgcaatta agggatcgaa ggtttcgcta
     1441 atcgatgaat ctgctcgaat ggctataaca ttaaagccag atattgctcg gatttatcct
     1501 gatgtgagtg ctttgataga ggatgagccc ttattaggtc ttgagccgat tgacgttgca
     1561 attagcgatg ctgcctatat attttttgca ccacgaatcc ggaaaatagg acaagaggta
     1621 aaaagcgatg ttacgtccaa gtttagggat gcaattagag ccttgaaaag aggttcttca
     1681 attatctata ctcttcccac agggataggt gggagtaacg aaaacattgc attaatcgaa
     1741 catataactg gtatgtcagt aggtaaagat attttctatt attatatgcc aatcaacaca
     1801 gatgatatta tagcctctga aactttgata ggttcattaa aatcaagaca ggatacacac
     1861 atcaccaaaa tgctatgcga tcctaacatg catggtaaat tgaattatgt aaatgttatt
     1921 tctgcagaat ttgtccattc tatcaagatc ttaggacatt atacagggat ggccagcatc
     1981 ttagaaatct gtaaaaatac ccacgacgct aacagccgta aggaagttat gcatcatgga
     2041 tacagcgaca tatatctaga tgatgttgca aatggattgt atgacctaag agcaattagt
     2101 tcatctctaa gcggtgcagg accattgatg tatcttgtta acggaactct caaagccata
     2161 gaaggttata taaaacacct gatagatgaa attagggata ttttaaggaa acgcgatctg
     2221 aaggcaagta gaactaaagt ggccattgct tggacattag atccaaacga gatgagagga
     2281 gacaagatag aattactatc ttcccttgaa tcaagactta aagactatat aggagacgtt
     2341 gagcgacagc aaggtgtcgc ttttgatcta tatccaagcg ataaaactat gatagttcta
     2401 gcatgttcta agtatgattt tgccaaagtt atgtctaaaa acaaacaaaa ctcagatttt
     2461 atattgatga aagcaaatcc tgcgtgcgaa actgcagttg ataaagtttc atcagaaaaa
     2521 taattaaaaa ttagaataat caagattttc taaatggcta ttaattttta tgtataataa
     2581 taatctttaa gataattaat tattctaaag aaaaattagt agtagtcatc aggtggaaag
     2641 tttatttgga ttttattatc cggactataa ctctccttag atttacctac aaattaatgg
     2701 gaattatttg attcccaatc ggtttttttc ttgtcatatt cacttcgaga atatctcgct
     2761 ttagcagggt ggcccatgac aacaacattg ggtggtacat ttttggttac tactgccgcc
     2821 attgcgacta tactgtttgt tccaattctt actccaggca gtattgccgc tctactgcca
     2881 ataattgcat catcctctac tataactcca accatttttc ggctcatagg atatggatca
     2941 ttagtaaaag tagcgcctgg accaatgaat acgttttttc ctattgatgt taatggggga
     3001 atatatacag aaccttcaat tcttgtatta tcgccaattt ttactttgta atctacatga
     3061 gttagtgaac caatcataac attattacca attactgtat tgtctccaac atatgcgaaa
     3121 tgccatatct ttacattttt gccaattctt gcagtggtag aaatatagtt tgttacaccg
     3181 gggggattag tataattact actatgacta tttgtaccat tattactttt atggtgatct
     3241 tgcataactt atcctcctct tatttctctc ttttatagtt ctttgttatc taaagatgcc
     3301 aaggatttcc atgctttata attttctcag gaactttatc actccatcgt tgcagaaagt
     3361 caatatctgt ttgcttttca cgaagttcat ctggtagcat gactggaatc tcctctataa
     3421 ttggataata acgagaacat tttgaacaaa acaaaatacc ttcagatatg acaatatcac
     3481 tgttattgtg attatcatta ttgtaattat atttttttat attaatttca aacaattcca
     3541 agggatagtg tttgtctata gggcatgcga ggatatcaag cattgatttt ttcatgtatc
     3601 atttcagatc cagataaatt ggggagccag tattactaga taaaagtgct gcttcagcca
     3661 ctcgtgtaac atttgtcgca tcaattgccg aaataaatgg tttgctaatt ttgccatcta
     3721 tcgcatcaaa tagactttgt aattccaagg ttaagggttc ttgaaattgt tgacggcggg
     3781 gaattatagt acaatcttcc tggtcaatag taatttcttg cgtgataaaa tctcccgcta
     3841 ttataccatc agtacatact gcactaaact ttctaacttt cttagg
//
LOCUS       DATAAS010000176         3132 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1796270, whole genome shotgun sequence.
ACCESSION   DATAAS010000176 DATAAS010000000
VERSION     DATAAS010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3132)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3132)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3132
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1796270"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(261..1673)
                     /locus_tag="VHF08_02855"
     CDS             complement(261..1673)
                     /locus_tag="VHF08_02855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067618.1"
                     /translation="MTRDKNDEKDFYESLEEQIRRNFLSYSNKFKLFKVIFSLLIILG
                     SFFFFTTLLPYFYIHIEKESISKQQNDILYEINQLNNKIKQVKNGIYILGESNNIFKA
                     LHDQIIRGPEDLRAFAVNLWLPNSSHTGTQDTVDKGFENCSMMPAVTYEWLDCNVRMK
                     IPSQLDEYKQLLYHNITVPVLMVGEELLESKDKLALKEELDDIQQSLVNKLDNQKKEM
                     RIYPQIFTLTMSGNAEVNVIFNEMFLDSWNEYEQIIGNQNNRLKALLSKIQSNLDRKG
                     EDLLSDLEEEKKRLQKTSDEMLTQMDQIDNVFKQSVSPFQNILLIEIIPLYPMSLAFG
                     FLVSMSILRDVYQLRGALYQLYKKRYSESDMQVNEHLVVNAPLWIDPLKPTQNHIARF
                     FVLVIPFLFFLITVIMLLYIWFFIHDTLNLFSDVTYFNRIMYGMPYMLSIAIFTYSFL
                     IIIKEYNLILPLKFKEKHES"
     gene            complement(2109..2918)
                     /locus_tag="VHF08_02860"
     CDS             complement(2109..2918)
                     /locus_tag="VHF08_02860"
                     /inference="COORDINATES: protein motif:HMM:NF014025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HEX2067619.1"
                     /translation="MISVIEIILLFNIAIPITQCDNLIADEYQSNSSNISINRDYIQQ
                     DLCSQDEKSPVQFINVISNTLQRFFVTSDVFGDIIKYTIALFVVIDPIGTVPLFIALT
                     ENMQKRERKAVSKIAVITAGVLLIVFAVAGTQILSIFGITIFSFMIAGGVLLFIVSIE
                     LLTHGAWRFGGTVPGESGVVPLAFPLLAGPGAITSVIISFQAAGLIVTILSIAIVISV
                     TYIILLLVNPIYRILGRRGSIIITRVFAVLVAAIAVQYIVEGATQIYLTIV"
BASE COUNT         1046 a          519 c          489 g         1078 t
ORIGIN      
        1 gtaaagttgt ttaatgaagg atttataaag cctgtttaat attggattgt tcttacattt
       61 ttcttattta tcattaaatg aattatcact ttctataaag agtatttctt cccaattgat
      121 acctgaatgg tattctttca ataatggagt gtgattactt ttgaactctt ctgataattg
      181 acaaaatttt gttatatcta caaattggta tattacttag agcaatgact aagaattagg
      241 aaatagaata taaagaactt ttagctttca tgtttttctt taaatttgag cggcaatatt
      301 agattatatt cctttattat tattaagaat gagtatgtga atatcgctat acttaacata
      361 tacggcatcc catacattat tctattaaaa taggtcacat ctgaaaagag attcaaggta
      421 tcatgtatga aaaaccaaat atagagcagc ataatcacgg taatcaaaaa aaacaaaaaa
      481 ggtattacaa gtacaaagaa acgtgctatg tggttttgtg ttggctttaa aggatcaatc
      541 cataaaggtg cattgacaac tagatgctca ttgacttgca tatcgctctc ggaatatctt
      601 ttcttgtata attggtataa tgctccacgg agttgatata catcgcgaag gatagacata
      661 gataccaaaa aaccaaatgc aagtgacata ggataaagcg gtattatctc aataaggaga
      721 atgttttgaa aaggagagac cgactgctta aatacgttgt caatctgatc catctgagtc
      781 agcatctcat ctgatgtttt ctgcaatctc tttttctcct cctctaaatc tgaaaggagg
      841 tcttctcctt ttctatctaa attagattgg atcttcgaga gaagagcctt gagcctgttg
      901 ttttgatttc caattatctg ctcatactca ttccaactat ctaaaaacat ttcattaaat
      961 ataacattaa cctcagcgtt tccagacata gttagggtaa atatctgcgg atagattctc
     1021 atctctttct tttgattatc caacttattt accaatgatt gctgtatgtc gtcaagttct
     1081 tcttttaaag caagcttgtc tttgctttct aataattctt ccccaaccat gagaacgggt
     1141 acagtaatat tgtgatacaa aagttgcttg tattcgtcta attgacttgg aattttcatt
     1201 cttacattgc aatcgagcca ttcatatgtt actgcaggca tcatgctgca attttcaaag
     1261 cctttatcaa cggtatcttg tgttccagtg tgagaagaat taggtagcca aagattaact
     1321 gcaaaggcac gcaggtcctc aggaccacgt attatttgat catggagagc tttgaatata
     1381 ttgttagatt ctcctaagat ataaatgcca ttttttactt gcttgatttt gttatttagt
     1441 tgattgattt cgtataaaat gtcattttgt tgtttagaga tgctttcctt ctcaatatga
     1501 atataaaaat atggtaacaa tgtagtaaag aaaaaaaatg aacctaatat tattaataaa
     1561 ctgaagataa ccttaaacag cttaaattta ttgctgtaag aaagaaaatt tctcctaatt
     1621 tgctcttcca acgattcgta aaaatctttt tcatcatttt tgtctctcgt catagtcttt
     1681 cctatgtacc accagcatct aaataactag caattaacct gaggtaccat attaaagagt
     1741 tattcaaacg cttatatgtt caattgcaaa caggcaatga ttatttacgt caaatacatt
     1801 cagcttaaaa tagataatag aattgaaagt cgaaaaacaa agtgatgaat ccatatatgt
     1861 attattataa actatgtctt tgtacggcag taggtatctg tcaaacaatt actctcgagg
     1921 tatttattat caggaaaata aatcttcaat atagacaaaa gtttgcttga aatagaaaga
     1981 ttttgacaat attagttcat tagttctatt tcatacatgg gccactaagc agttaaaatt
     2041 atatacgaat atactgagaa cagataatcc atgagtaatt aacatattga tatttaatac
     2101 atttagcttt atacgattgt cagatagatc tgcgtagctc cttcgacaat gtactgtact
     2161 gcaattgctg cgaccaaaac tgcaaatact cttgtaatta ttatagaacc acgtcttcca
     2221 agtattctgt aaataggatt tactaatagt aagatgatat atgttacact aattacaatt
     2281 gcaatggaca atattgttac gattaatcca gcagcttgga aagaaattat taccgaagta
     2341 atggctccag gtcctgcaag taatggaaat gcaagtggga ctactcctga ctcgcctggt
     2401 actgtaccac cgaatctcca tgctccatga gtcagtaatt ctattgatac gataaacaat
     2461 agcactccac ctgcaatcat aaaactgaat atagtgatac caaaaatact aagaatttgc
     2521 gtaccagcta ctgcaaatac gatcaacaat acacctgcag taataacagc tatctttgaa
     2581 accgcttttc gctctctttt ttgcatattc tcagttagag caataaaaag agggacagtt
     2641 ccaatagggt caattacaac aaaaagagca atagtgtatt taatgatatc cccaaataca
     2701 tctgaagtca caaaaaatct ttgtagtgta ttcgaaatga cattaataaa ttgaactggt
     2761 gacttctcat cctgtgaaca aaggtcttgt tgaatatagt ctctatttat gctgatatta
     2821 ctactattag attgatattc atctgctatt agattgtcgc attgtgttat tggtattgct
     2881 atgttgaaca ataagattat ctctattaca gatatcattt gttgggttga attctatcta
     2941 ccttgttaaa aaccatcata aaatcaaagc gttctatcgg gtttgaatga tagttatatg
     3001 tctgacttta cattactgca ccttttgata tcagaatgta aaatgaggct agaaacccat
     3061 ttaaatttgc ttgaatccta ttgttaaatc tatctatttt agccatctac catgaaggtt
     3121 actattgctc tc
//
LOCUS       DATAAS010000177         3698 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2337617, whole genome shotgun sequence.
ACCESSION   DATAAS010000177 DATAAS010000000
VERSION     DATAAS010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3698)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3698)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3698
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2337617"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(485..3202)
                     /locus_tag="VHF08_02865"
     CDS             complement(485..3202)
                     /locus_tag="VHF08_02865"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004417.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed DNA polymerase I"
                     /protein_id="HEX2067620.1"
                     /translation="MTQQDYFQSDKRKRYGDLQELPENTPSLLLSAIYLGDEQKVYLK
                     FYDSISDKVYFWRDRTNHKPYCYTKMQYKNTAEKIVQNEKKYSLESTKKIDLISDKEV
                     DILKIIAPDPLSIGGTENSVREKITSWEADIKYHENYLYDTGLIPGSYYIRKGEEIKR
                     FEYPISNKVQEELKNLLWNKIKEEEDKEGNNEYRQYITNWAKLLNQPIPNLKRVSIDI
                     EVESEEGRMPTPRDHERPVIAVGFVANDGFKKVLVLESDESRDDRYSFIQEVEICKTE
                     KELLKKTFQIINSYPIIVTYNGDDFDLPYLYARSQDPRIDPVGKEIISKDEIPIIIKR
                     ESFVKRGIQAEPVQIKHGLHLDLFRTFQNRSVQIYAFSRKYTEYTLNAICEALLNDSK
                     VEFDGDISDLPIQKLAEYCLKDADLTFRLTSFNDNLLMKLLVVISRISRLSIDDVARF
                     GVNQWIRGMLYYEHRQRKALIPRRDELQAKGSSSTTAIIKVKKYRGGLVVEPALGIHF
                     NVVVVDFASLYPSIIKVHNLSYETVNCPHQSCMNDSAQHISETTHWICKEKRGLTSLL
                     IGSLRDLRVNYYKYLSRDKSISAEERQLYNVVSQAIKVILNASYGVMGAEIFPLYCLP
                     VADATAAIGRTTTTKTIEKCKEVGIDVIYGDTDSLFLKNPSTASVEEISSWARNNLGI
                     DLEIDKQYRYVVFSDLKKNYLGVVQDGTVDVKGLTGKKSHTPPFIRNAFYKILDILGD
                     VNSTNDFEFAKEQIKKIIQENARNLELGKIPLPDLSFNVMVNKSPNKYGKKTSAISKP
                     SSLDGNTKDREVETYKGLPQHIKAAKLLLDNGKEIKAGDIISYVKTKTGEGVKPIDLL
                     IRMEDIDTEKYLETMEATFDQLLSSLNFNFKSILGKPRQSNLDELFWSR"
BASE COUNT         1121 a          655 c          521 g         1401 t
ORIGIN      
        1 aactgacttg gcatccaatc ttgaatcaaa gtccattatc tcaaatatat gaggaaaatt
       61 atttgatttt aatgaatatt aagatagtta ccataagtta cataataaca aatctttgca
      121 attttataat tagaattaat actcaaatac atatatgact tttttgtttt gatcttgaat
      181 ccattaattc attcatttat ttattcattc attcattgaa tgctaagaag acagccgtaa
      241 aacgaacaga tatttctatt attcaccaaa tatctcgtgt tatggaaatt taagcggatt
      301 aagctcattt gatatctttt ttgttgtgga tgaggatttt ataaagatct ttcaaaaaat
      361 aaaacattct cttttgccta aaattgttga agaattatct atttgtaata accttcttag
      421 acattcataa atatatatat atttatatat atacatatat atctattttc gatacaatct
      481 taacttatct actccaaaac aactcatcta aattcgattg tctaggcttg cccaatatag
      541 atttgaaatt gaagtttaag gatgagagaa gctgatcgaa agttgcctcc attgtctcaa
      601 gatatttttc agtatctata tcctccatcc tgatcaaaag atctataggt ttaacgcctt
      661 ctcctgtttt cgtttttaca taggaaatta tatctccggc tttaatttct tttccgttat
      721 ctagtaataa tttagctgct ttaatatgct ggggtaatcc tttatatgtt tcaacttctc
      781 gatcctttgt attaccgtct aacgaagatg gtttactaat agcagatgtc ttcttaccgt
      841 atttattggg agacttattt accatgacat taaaacttaa atctggtaga ggtattttcc
      901 cgagttctaa gtttcttgca ttttcttgaa taattttttt aatctgttct ttagcaaatt
      961 caaaatcatt cgttgaatta acgtctccta aaatgtccaa gattttataa aatgcattgc
     1021 gtataaatgg aggagtatgt gatttctttc ctgttaaccc tttgacatct accgtaccat
     1081 cttgtacaac tcctaaataa tttttcttta aatcactaaa tacaacatat ctatattgct
     1141 tgtcgatttc aagatctata ccaagattat ttcttgccca tgaagatatt tcttcaacac
     1201 tggcagtaga tgggtttttt aaaaaaagtg agtcagtatc tccatatata acgtcaatgc
     1261 ctacctcttt gcatttttca atagttttag ttgttgttgt cctccctatt gccgctgttg
     1321 catcggctac aggcaaacag tagagcggaa agatttccgc acccattact ccataactgg
     1381 cgttaagaat tactttaatt gcttggctta ctacattgta tagttgccgc tcttcagcag
     1441 atatactctt atctctagaa aggtacttgt aataatttac tcttaaatct cgcagtgaac
     1501 caattaaaag ggatgttaaa cctctctttt ctttacatat ccaatgtgtt gtttctgata
     1561 tatgctgtgc tgaatcattc atgcaagatt gatgaggaca atttactgtt tcatatgaaa
     1621 gattatgtac tttgataatg ctcggataca gacttgcaaa atccacaact accacattaa
     1681 aatggatgcc aagagcaggc tctactacca aaccacctcg gtattttttc acttttataa
     1741 ttgcggtggt tgacgaactg ccttttgctt gaagttcatc acgtcgtggt atgagtgcct
     1801 tcctctgacg atgctcataa tataacattc cccttatcca ttggttaaca ccaaaacgag
     1861 cgacatcatc aattgataat cggcttatcc tagatatgac tactaaaagt ttcattaata
     1921 aattgtcatt aaaactcgtc aatctaaaag tcagatctgc atccttgaga caatactctg
     1981 ccagcttttg tattggcagg tcgctaatat caccatcaaa ttcgacttta ctatcattta
     2041 atagagcttc acatattgca ttaagtgtgt attccgtata tttacggcta aaagcgtaga
     2101 tttgtactga tctgttttgg aatgttctga ataaatccag atgtaatcca tgttttattt
     2161 gaacaggctc tgcctgtatt ccacgcttta caaaactctc tcttttgatt attattggaa
     2221 tctcatcctt tgagattatc tccttgccaa caggatcaat tcttggatct tgggatcttg
     2281 cataaaggta aggaaggtcg aaatcatctc cattatatgt aacaataata ggataagaat
     2341 taatgatttg aaatgttttt tttaataatt ctttttctgt tttacaaatc tcaacctctt
     2401 gaatgaatga ataacgatca tcacgggatt catccgattc taagacgagt acttttttaa
     2461 atccatcatt tgccacaaaa ccgactgcaa taacaggtcg ctcatgatcg cgtggcgtgg
     2521 gcatcctccc ttcttctgat tcgacttcga tatctatgga aactcttttc agattaggaa
     2581 taggttgatt gagaagtttc gcccaattcg taatgtattg tcgatattca ttatttccct
     2641 ctttatcttc ctcttctttt attttgttcc ataatagatt ttttagctct tcttgaactt
     2701 tattagaaat tggatattcg aaccgtttta tttcttctcc tttcctaata taataggatc
     2761 caggaattag tccagtatca tatagataat tttcatgata ttttatgtct gcttcccatg
     2821 atgttatttt ttctctgaca ctattctcag ttcctccgat tgataatgga tcaggagcaa
     2881 ttatttttaa tatatctacc tctttgtcag atattaagtc aattttcttt gttgattcta
     2941 acgaatattt tttttcattt tgaacaattt tttcagctgt atttttgtat tgcatctttg
     3001 tatagcaata cggtttgtga tttgttctgt cacgccaaaa gtaaacctta tcagaaatag
     3061 agtcataaaa ttttagatat accttttgtt cgtctcccaa atagattgct gaaagtaaaa
     3121 gtgaaggcgt attttctggc agctcttgta agtcgccata tctctttctt ttgtctgact
     3181 gaaaatagtc ttgctgagtc aatatattat ttaatttcga ataggaatgt attaaaagct
     3241 tcatattaaa ttacatggac taatacattt cagatgaaag gtctatcgca ttccatttaa
     3301 acagcttgtg aatatcattg tataatgtaa gcaagcccgc tatactaaac ccagaaaatt
     3361 ataggctaat ctgttgtttc tccatcaata tttattctta tttaacaact ttagtcattc
     3421 catttttcta tgttattatt gtcatttgtg ttctttcttg ttacgtctaa tttcaaagtt
     3481 gatcatatag aattaagaca aagaaagata ataataatcc aattcctata aacaaatgcc
     3541 acacaaaaca tatatggatt attctaaata tctttaataa aaaagtgcat tgaactaacc
     3601 ttctctagaa tgacactgca ttaaagagat tcccttctag atacatatat cataaaacta
     3661 gctatacttt tttacatctt atacaattat tttaagta
//
LOCUS       DATAAS010000178         2434 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1798302, whole genome shotgun sequence.
ACCESSION   DATAAS010000178 DATAAS010000000
VERSION     DATAAS010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2434)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2434
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1798302"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..697)
                     /locus_tag="VHF08_02870"
     CDS             complement(<1..697)
                     /locus_tag="VHF08_02870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase family protein"
                     /protein_id="HEX2067621.1"
                     /translation="MTITEKILARAAGKSHVSPGDVVFAKIDKVMLHDVSGPGVIKVF
                     SEWEKKGKKLERIWDPDRVWITEDHFVPAADRISADNVIALSNWSEKFGIKKHFKYGL
                     GQYGICHTLSHEEALVLPGEVYVGGDSHTNTTGAMGSFAAGLGHTDIAYVLMNGQIWF
                     KIPETMMFKLKGKKPDYIMAKDIILRIIGDIGTDGANYNTMQFSDEVIKELSMEERLT
                     LTNMTTEAGAKNGI"
     gene            778..1554
                     /locus_tag="VHF08_02875"
     CDS             778..1554
                     /locus_tag="VHF08_02875"
                     /inference="COORDINATES: protein motif:HMM:NF014098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coenzyme F420-0:L-glutamate ligase"
                     /protein_id="HEX2067622.1"
                     /translation="MGRILDILEVLPLSVSLKTSKFNLFQSLCLPDFKFRDNDILVIS
                     SKYVSMSEGSIRKLDSVKNVSRRAVDLAAKYHMNAKLVELVIRESDFVFKGIPGFLLA
                     IRDGIIAPNAGIDKSNVSSGFVILYPRQPFKTAENLRRKFLLNLGIKVMIIIADSRLM
                     PTRIGTTGIAISCAGFEPIEDQRGKNDLFGNILKVTLKAVADSLATIGVLAMGESNEL
                     IPAVVIRNIKVIATNRKLSWHDMAVDATEDIYMRAVQYQN"
     gene            1632..2201
                     /locus_tag="VHF08_02880"
     CDS             1632..2201
                     /locus_tag="VHF08_02880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067623.1"
                     /translation="MSEFLTSYPRRISVVKGLHDFIHHEEIELDHLSLMVKIKKDEII
                     KALITEGFRRVKFENKKPMQIGSGFTKRLCKPWEMHVRLLDLQQGLIAIQAEVEISRK
                     YIQHIRSVRAPVIYEIESILTKHSIEYKIWNAKVRDYISNIIDNHQIKLSAPSLPAMP
                     WKPMMGFGITVAIIYALKFAGIIKNTQLL"
     gene            complement(2228..>2434)
                     /locus_tag="VHF08_02885"
     CDS             complement(2228..>2434)
                     /locus_tag="VHF08_02885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067624.1"
                     /translation="KRFSNSNIYFIFELYGTSCGEFRLKDVFFEHVSSFSSSSPLLLL
                     DNNEKVLYGSFLFRDIPRSISNSQ"
BASE COUNT          818 a          425 c          446 g          745 t
ORIGIN      
        1 ttattccgtt cttcgcgcca gcttctgtag tcatgttagt cagcgttagg cgctcttcca
       61 tacttagctc ttttattact tcatcagaaa actgcattgt attataattt gcaccgtcag
      121 ttccaatatc acctataatt cttagtatga tatccttggc cattatatag tcaggttttt
      181 tccctttcaa tttgaacatc atcgtctctg gtattttaaa ccagatttga ccattcatta
      241 gaacatatgc aatatctgta tgacctagac cggcagcaaa tgatcccatt gctcccgtag
      301 tatttgtatg ggagtcccct ccgacataga cttctccagg cagcacaagt gcttcttcat
      361 gtgagagagt gtgacaaatc ccatactgcc ctaaaccgta tttgaaatgc ttctttattc
      421 caaatttctc actccaatta gaaagagcaa taacattatc agcagaaatt ctgtcagcag
      481 caggaacgaa atgatcttct gtaatccaga ctcgatccgg atcccaaatc cgctcaagtt
      541 ttttcccctt tttttcccat tcactgaata ccttgataac tccaggtcca gaaacgtcat
      601 gcagcatgac cttatctatt tttgcaaaga ctacatcacc tggtgagaca tgcgactttc
      661 ctgcggctcg agcaagtatt ttttcagtaa ttgtcatacc caaaaataat tcactgtatc
      721 gataattcga gttaattcac agattaatac cttttgcata acgtaaaata caaaagtatg
      781 ggaagaatat tagatatatt ggaagtccta cctttatcag tatcattaaa aacaagcaaa
      841 ttcaatcttt ttcaaagcct ctgtttacca gattttaaat tcagagataa cgatattctt
      901 gtaatttcaa gtaaatatgt ttctatgagt gaaggttcta taagaaagtt agatagtgtc
      961 aagaatgtaa gcagaagagc agtagacctt gcagctaaat atcatatgaa cgcaaagcta
     1021 gttgagcttg ttatccgtga atctgatttt gtcttcaaag gtatacctgg ctttttgctt
     1081 gcaatcagag atggaattat agcacccaat gctggaattg acaagtcaaa tgtatcttca
     1141 ggatttgtga tattgtatcc tcgccaacct tttaaaactg cagagaattt gcgacgaaag
     1201 ttcctgctaa accttggcat taaagttatg attattattg cagatagccg attaatgccc
     1261 actagaattg gtactacagg tattgctata tcatgtgcgg gatttgaacc tattgaagat
     1321 caaagaggga aaaatgatct atttggaaat attctcaaag taactcttaa ggcagtcgca
     1381 gatagccttg cgactattgg agtcttagca atgggtgaaa gcaatgaatt aatacccgcg
     1441 gtagttatac ggaatattaa agtaattgct acaaacagaa aactttcttg gcatgacatg
     1501 gccgtagatg caacagaaga tatttacatg agggccgtgc aatatcaaaa ttgattttct
     1561 aatataacag aattaattat ttagacatag agttttaata acgcgctata ctgaaaatgg
     1621 ctgcctgata tatgtctgag ttcctaacta gctatcctag gcgcataagc gttgtaaaag
     1681 gattacatga ttttatacat catgaagaaa ttgaattaga ccatttaagt ttaatggtaa
     1741 agataaagaa agatgaaata attaaagctc ttattacaga gggatttcga cgagtcaaat
     1801 ttgagaacaa aaagccgatg caaattggta gtggttttac aaaaagactc tgtaagccat
     1861 gggaaatgca tgtcagattg ttggatttgc aacagggttt aattgcgata caagcggagg
     1921 tagagatttc acgtaaatat atacaacata tcaggtcggt aagagcgcca gtgatatatg
     1981 agatagaatc aatattgaca aagcatagta tagaatataa aatatggaac gcaaaagtga
     2041 gagattatat atctaacatc attgataatc accagataaa gctcagtgct ccttcgttac
     2101 cggctatgcc atggaaacct atgatgggtt ttggaataac tgtggctata atttatgcgt
     2161 taaaatttgc tggaattatt aaaaatacac agcttctatg aacgttgcaa tagataaggc
     2221 catagcatta ttgcgagttg gaaatcgatc ttggaatgtc tctaaatagg aaagatccat
     2281 ataacacttt ttcattatta tctaacaaaa gaagaggaga agaagaagaa aaagaagaga
     2341 catgttcaaa aaagacatct tttagacgaa attctccaca tgaggtacca tataattcaa
     2401 aaatgaagta aatattggaa ttagaaaatc tctt
//
LOCUS       DATAAS010000179         1708 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1799459, whole genome shotgun sequence.
ACCESSION   DATAAS010000179 DATAAS010000000
VERSION     DATAAS010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1708)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1708)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1708
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1799459"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(816..1574)
                     /locus_tag="VHF08_02890"
     CDS             complement(816..1574)
                     /locus_tag="VHF08_02890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067625.1"
                     /translation="MAFLHRNFYQITKMRYYIKCKLNPKERKRLSDSIRTGSLAQGKI
                     FQEGMQTALREATIDENDIVHFVEICYCLEGGLYPMAMEIPVLNEYFDNIVEVKDARL
                     RYQCTMECEFCDCTRNIKLPGESLTNELDLKTDELNKKNLVDIGRIRLNRKKQKESIE
                     GLRELLLNINNDNNEENNKIKIKPIFAAAALSGIFAIFYDGIDYFRIKNIPDTEESRQ
                     MLQTIGLEIYDSVDSMKSAARRSLAKSDKRSNVI"
BASE COUNT          554 a          260 c          270 g          624 t
ORIGIN      
        1 tagagattag atataaaaag atatttttgc ataagaatgt ggtcaagcat ttaaaagtga
       61 aaaagttgca gaccattttc gtcagaaggc gatcctaact aaacatttga taaatatgtg
      121 agtcttaatt acataacttg ctatagagaa ttgttcctaa atatatttta ataacggttc
      181 ataaactctt ggttcatgtc gataaaatac ctaattatag agaagagaat attcagggaa
      241 gttatctgtt aatgcataaa ggtaagtgtt ctagcatgtt atatgtgtta tctacctata
      301 tgtcagagaa ggtaaaaaag ggttaatgag aaagatttgg atcttactgc tatattgtga
      361 tattcattgt catccgctgt gtaacaactg atatactaaa tatatgaact atcttgttag
      421 taaaccaata gcattagaag aatgaaaaat ctaattaatt caagtgtaat tatacaaagt
      481 ataattaatc ttttgtgact attaatgttc tatttctaat acatttcatg tcatattatg
      541 tataatatat gagaacttaa ttgatttagg aagcatatgt aagatagttt tcaatactat
      601 agcgggtaaa caatttctgt aactctgatc gaacttttat gtgtaagaga attgaatgga
      661 aattgcagaa agagctgtaa gtcagtatta ggttttggta tcttattgtt ggatcatcga
      721 taataaggtg gactaattag gagtcagatg ttacataaat tattttaatt catggtaaaa
      781 tacgaattca gaaaatgctg tacgggttga attcatcaga taacatttga acgtttgtca
      841 cttttcgcaa gagatcttct cgccgctgac ttcatagaat ctacactatc atatatttct
      901 aaacctatag tctgaagcat ttgacgagat tcttcagtat ctggaatatt ttttattcta
      961 aagtaatcaa taccatcata aaatattgca aaaataccag aaagtgcagc tgccgcaaat
     1021 atcggtttaa ttttaatttt gttattttcc tcattattgt cattattaat atttaacaat
     1081 aattccctca atccttcaat actttctttc tgctttttcc tgttcagcct tattctacct
     1141 atgtccacca agttcttttt atttaattca tctgttttga gatccaattc attagtcaat
     1201 gattctcctg gaagctttat attgcgagta caatcacaaa actcacactc cattgtgcat
     1261 tggtaccgta ggcgggcatc ttttacttct actatattat caaaatactc gttcagaact
     1321 ggaatctcca ttgccatagg atacaggccg ccttccaagc aataacagat ttcaacaaag
     1381 tgtactatat cgttttcatc gattgtcgcc tctcttaatg cagtctgcat gccttcttgg
     1441 aatattttac cttgtgcaag tgaacctgtc ctgatagagt cagataatct ttttctttct
     1501 ttaggattta gtttgcattt gatataatat cgcatctttg ttatctgata gaaatttcta
     1561 tgtaaaaaag ccatataagc atattcttca aataaaaaaa ggtgtatgga cgttagataa
     1621 tagtaatatt ttcctattaa agctgctgtt gctacttatt tataataatt agattttgta
     1681 gtcttggtaa tgtgtggcct cttgccac
//
LOCUS       DATAAS010000180         1622 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2340093, whole genome shotgun sequence.
ACCESSION   DATAAS010000180 DATAAS010000000
VERSION     DATAAS010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2340093"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..262
                     /locus_tag="VHF08_02895"
     CDS             <1..262
                     /locus_tag="VHF08_02895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067626.1"
                     /translation="TVTLQGTVSPMVPITARWEQTGGEPEVDIIGSEAPISTFAVPGC
                     DEIEGDATLTFRLTVIDGQGVTDVASANFVVTDAVAADEEEG"
     gene            723..1046
                     /locus_tag="VHF08_02900"
     CDS             723..1046
                     /locus_tag="VHF08_02900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067627.1"
                     /translation="MKPNNFAMRDWHLEHVEKVIVRYITGISPDASSFEKRNFKKYST
                     ISNCAKQIEYDIKHGVTTDEVLAVMQKIRHDKSFSQLRANPETLPRLDELERQVCAPK
                     RVTSW"
BASE COUNT          562 a          245 c          277 g          538 t
ORIGIN      
        1 cactgttact ttgcaaggta ccgtcagccc tatggttcct ataacagcaa gatgggaaca
       61 gacaggagga gaacctgaag ttgatataat aggttctgaa gcacctatta gcacatttgc
      121 agttccggga tgtgatgaga tagagggaga cgcgacatta acatttcggt tgactgtcat
      181 cgatggacaa ggtgtaactg atgttgcctc tgcaaatttc gttgtaaccg atgctgtcgc
      241 tgcagatgaa gaagaaggat agattgaaac aatagaagat tacgctaatc ttaaagatat
      301 ggaaatcttc acaatataga gataagttaa tgctttcttg acaaatttta ccagtaataa
      361 gcataacgag atttagaacc taggattatg tttattgttc catgtagaca gtcgatcacc
      421 tatccttatc aggataggta ttcttcaata actcttcctt tgagcaatca attcatactc
      481 atacctataa aaagacaaac gatatttctc aaagcgatgt ccttatgcga ttaaagtata
      541 cgtctcaaaa ttatatatct taatgtagag atacaacgtc tggtagacga cctattcact
      601 ctataattta gaaaaggtta gttaggatta tttccaaatg aaagtaaata aaaaaaaggg
      661 aatactgtga tgtattcaaa gtattatata gccgtttttg gtaaaggaag actggaagca
      721 ttatgaagcc taataatttt gcaatgagag actggcattt agagcatgtc gaaaaagtca
      781 tagtccgtta tataacaggc atatctcctg atgcctcgtc atttgaaaaa cgtaatttca
      841 agaaatatag tactatttca aactgtgcta aacagattga atatgatata aaacatggag
      901 tgacgaccga tgaggttttg gcagtgatgc aaaaaattag acatgacaaa tctttctcac
      961 agctacgtgc aaatccagag acattaccaa gactcgacga gctagaaagg caagtttgcg
     1021 ctccaaaaag agtaacatct tggtaataga tcgttagtat tttctatact gttattgata
     1081 attttcttct tttacatagt cgtcactagt tgcatcagta atattgattc ttaactataa
     1141 gaaatttctt gggtgaacaa attcaggcaa tcaattatta atatttaaaa ggaatttatt
     1201 tgtatattat aaatttagta tcgacacatg aaaatttgga ttagaagtag tcgatgatag
     1261 ttattattta cttgctatat tgaactgatc tttaatctat aatctatttt tgacctttat
     1321 ttctattatt ttatgattgt tgttttttgt aatcatgttc ttttatcgaa tcaactttgt
     1381 ctattattta tagtaaattg tatacaacat tcccaatttc aatcgaattt gatatcattt
     1441 ccttgcgaaa ataaaatcaa gttaaaattt tagcagagaa tatcatacct ataaattaga
     1501 tgatttctat tttgtctata gctcattgat cataaaaaat actgatccat ataaaatgaa
     1561 aaagtgcgta tcttgcaaaa gagatatcgc tcttaatgaa aagtacttta cctatccatt
     1621 at
//
LOCUS       DATAAS010000181         3329 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3412652, whole genome shotgun sequence.
ACCESSION   DATAAS010000181 DATAAS010000000
VERSION     DATAAS010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3329)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3329)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3329
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3412652"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..220
                     /locus_tag="VHF08_02905"
     CDS             <1..220
                     /locus_tag="VHF08_02905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067628.1"
                     /translation="KEAMTPAKIKEHEPTAVKRDPSDQKIVEPGQQGGTSTEEATEKA
                     RKSGMTKGTAGAAETGSEYEQGAAGSNK"
     gene            686..2074
                     /gene="gatD"
                     /locus_tag="VHF08_02910"
     CDS             686..2074
                     /gene="gatD"
                     /locus_tag="VHF08_02910"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Glu-tRNA(Gln) amidotransferase subunit GatD"
                     /protein_id="HEX2067629.1"
                     /translation="MSAEGKKMDIDGYKGRSLELLSKGEVSVGDTINVQTNDGQFTGI
                     LMPRYELADQNHVVIKLKSGYNIGVKTANIQSITKIMQESDQNISVETIKKEYLKEKL
                     KEVEILPKIALISTGGTIASKVDYRTGGVSAALSASELYAYVPELGKYASIDPEVILN
                     EYSENLKPEHWTMIANKIAEKVKSNMYRGIIVSHGTDTMHYTASALSFALQNLPIPVV
                     IVGAQRSSDRPSSDAALNLISATIFVTKSELSGVFVTMHASSSDDTIACHVGTRVRKN
                     HTSRRDAFESIDITPVAMIKGDRVEIQKEQSEIKLHKRNDSSSSFLVKPDFNSKAILL
                     KYYPGFDPYLITYATMSGYKAIIVEGTGLGHISRECFPQIQNAVESGVMICMTSQCIW
                     GRIRMTVYDTGRDLLNIGVIPLSDMISETATVKAMWVLANSKEIESAKKMMQENIANE
                     ISSVIPITDKRI"
     gene            complement(3184..3309)
                     /locus_tag="VHF08_02915"
     CDS             complement(3184..3309)
                     /locus_tag="VHF08_02915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067630.1"
                     /translation="MAKKIKISKTKRKKRKKKIRNLKNQKKIMKNKKNKQKKLAV"
BASE COUNT         1163 a          500 c          608 g         1058 t
ORIGIN      
        1 aaaagaagca atgactcctg ccaaaataaa agaacatgaa ccaactgctg taaaaagaga
       61 tccaagtgat caaaaaatag ttgaaccagg acagcaagga ggcacaagta ctgaggaagc
      121 aacagaaaag gcaagaaaaa gtggcatgac taaaggtact gcaggtgcag ctgagactgg
      181 tagcgaatat gaacaaggtg cagcaggatc aaacaaataa gtaaaaaata aaattaaagt
      241 aaaaatataa taaaaagtag tatggcgtag tagttactag tagtagggaa tgtaatgctg
      301 taggtaataa tttttattct tttatcctat tcattaatgc tttgtgctaa aatggggcgt
      361 catatgtccg ttattacttc ctgcataagt gtggggttta ctatttaagg aatagaatca
      421 ttataatatt tcaagttcta attcctttgc tttacataga aggtttgcac aaccattgat
      481 atagcgcata tcatagtaga gcttggaaga atttgaaatt tgttattaaa gtaagaaatt
      541 agactcaagt ttgtagatgc cttctaacaa catcatatgt gaatgcttca gtagttttag
      601 ttttttgtat tatctagagt atatgtttat tgtatcagat ttcttaatat tatacatacg
      661 taatcaagtt aggaggagta tccaattgtc agcagaagga aaaaaaatgg atatagatgg
      721 atacaaagga aggagcttgg aattgctctc taaaggagag gtttctgtag gagatactat
      781 caatgtacag acaaatgatg gtcagtttac aggtatttta atgccgcgat atgagttggc
      841 tgaccaaaat catgtagtta tcaaattgaa aagtggatat aacattgggg tcaaaacagc
      901 caacattcaa tcgataacta aaataatgca agaatcagat caaaatattt ctgttgagac
      961 aataaaaaaa gagtacctaa aagaaaagct aaaagaggtt gaaatacttc caaaaattgc
     1021 tcttataagt actggtggaa caattgcaag taaagtagat tacagaacag gaggagtcag
     1081 tgcggcactt tcagcatctg agttgtatgc ttatgttcct gaacttggaa agtatgcttc
     1141 aatcgatcca gaagtaatat taaatgaata tagtgaaaat ttaaaaccag aacactggac
     1201 tatgattgca aacaaaatag ccgaaaaggt aaagtcaaat atgtatcgtg gaataattgt
     1261 ttcacatgga actgatacaa tgcactatac agcatcagcg ctcagttttg cgctacaaaa
     1321 tcttcctata cctgttgtaa tagttggagc acaacgatct tctgataggc cttcatctga
     1381 tgctgctctc aatcttatta gcgctacaat atttgtgaca aagtctgagt tatctggagt
     1441 ttttgttact atgcatgcta gctcttcaga tgatacaatt gcgtgccacg taggcactcg
     1501 tgtgagaaag aatcatacaa gtagacgcga tgcatttgaa tcaatagata ttacacctgt
     1561 cgccatgata aagggcgaca gagtagaaat acagaaagaa cagtctgaaa taaaactaca
     1621 taagcgaaat gacagtagca gtagtttttt agtcaagcca gattttaata gtaaagctat
     1681 cttgttaaaa tactatcccg gattcgatcc ttacttgata acctatgcca caatgtctgg
     1741 atataaagcg attatagttg aagggacagg acttggccat ataagtagag aatgttttcc
     1801 tcaaatacaa aatgcagtcg aatctggagt aatgatctgt atgacttctc aatgtatctg
     1861 gggaagaatc agaatgactg tttatgatac agggagagat ttacttaata tcggtgtgat
     1921 tcctttatct gacatgatat cagaaactgc tacagtaaaa gcaatgtggg tgctcgcgaa
     1981 cagcaaagaa atagaatctg ccaagaaaat gatgcaagag aatattgcta atgaaatatc
     2041 tagtgttatt cctattacag ataaacgaat ataacaatca gaagagcatt gttatttata
     2101 attgtcatta ttaccatcat cacaaaaaga agtagtagca gcatttgata tgaaaattga
     2161 attagtaaaa caaggattac acagccatat atttcaaatt atttcaaaat attaggaata
     2221 ataaatggta caattgacag attatattat agcaacaaga tcagaatcta atatttcaga
     2281 taattataaa aaaagggata atcaaagatc tcttcaaact atctgaattt tttaaccacc
     2341 agaaatcatt taaggaaatt actagagatg accttctctt gtaccttaac agtctacgaa
     2401 aacccgaacc tctagaccct cttcataagt ggattggaac atataattta agattagcaa
     2461 tttgtcaatc aattttttaa atggttacat tatctagata ttgaaagaaa atatcgtcaa
     2521 aaaccttccg taataaaaaa tattagtaaa ttaaatagaa aagaagtttc aacctacaaa
     2581 ccatcgattt atggacattt gaagatgact tgttattttt aaaatattgt ccaagtaaac
     2641 acgtatcagg tttagcatgt attatcaggt gactcaattc gcagacttca tgagctttta
     2701 aatttgagaa taaaagatat tgtatttaag attacagacg ggctatgcga aaatgttgag
     2761 agatttgcgt attcttgatt tttctgctga taagccggtg atgtaccttg gtatggcggc
     2821 attggttgtg gccttggatt gccaaattga tcataactca tattgttata aatatatgct
     2881 gtgtctgatt ggctataagg ttgtgtattg ttctctgaaa taagaacatt tccatactgt
     2941 atattagcgg ctttaatttg attatctctt cattacttat atattattta tctggaacat
     3001 ttttgttaag aacaagtctg gcacgccttg gaaaattcga atcgtttaat gttgtcttga
     3061 ttaaatatat acatctcatc aaatagttat gagctgacga tttgcttatt cctaacttgg
     3121 ttgcagcatt tgtatactgt ctgtttatat cttttgcata ttcttttaga aatactaaag
     3181 aatctatact gccaactttt tctgtttgtt cttcttgttc ttcattatct tcttctggtt
     3241 tttcaggttc ctgatcttct tcttcctctt cttcctcttc gtcttcgata tctttatctt
     3301 cttagccatt ttgattattc acctgttgc
//
LOCUS       DATAAS010000182         1513 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4496048, whole genome shotgun sequence.
ACCESSION   DATAAS010000182 DATAAS010000000
VERSION     DATAAS010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1513)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1513)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1513
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4496048"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(387..462)
                     /locus_tag="VHF08_02920"
     tRNA            complement(387..462)
                     /locus_tag="VHF08_02920"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(424..426),aa:Glu,seq:ctc)
     gene            626..>1513
                     /locus_tag="VHF08_02925"
     CDS             626..>1513
                     /locus_tag="VHF08_02925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067631.1"
                     /translation="MQHIPSELVDYISNNFRYPAGIIGCRATNPEMSLDCCEYDIAIF
                     NKQSAGNRFIRLGNHGLELISLTETSRINVMKLHNMIIIQDDDSFSLSSANNVPGYQK
                     YYLRVLRDLGKKSIINSLFYHEKITKNIQRNSVLAAMWLKIAAYDFLEGILALSEIKP
                     MPIHELNQIRKITIERQEIAEGVKIALECVGLERATRSTISRSIEAICELNSMDYDKE
                     LIKIKVNHLLEKGMVSDCYYYLGKMGHRCLVYRDYEFLSKYRKLIQISMDLTNDMQQL
                     EKLHINLASISKIILKKLSH"
BASE COUNT          549 a          225 c          265 g          474 t
ORIGIN      
        1 taacacgaat ttcaagtatc gatatgttct ttttatccta aaaaatgtag atatcttttg
       61 agtatcgaat ggaaagaaat ttccagtaat tctcataatg atggtaataa tttctactaa
      121 aaagctacag gatgaaatat aatatctatt gttctataat aaatttgtat aattagaggc
      181 aatcatcgcc agagatagtt attatttatt accattaaaa ttaatattga tatgattctt
      241 gatccgacaa gattttatca gtcattttac ttttcagtat caatgtagga taatgacgat
      301 tatgatagtc cccctattat tctggttata gccagaaaag atgaagagaa ctaccggact
      361 actgaatcct acaggaagaa attaaatgct ccggccggga tttgaacccg ggatcgtcgc
      421 cttgagaggg cgaaatgctt aaccggacta caccaccgga gcttaggcac aatgaatttg
      481 gatcttcata taaaacttat gtcatcatat gtactatgcg tcacatatat atctgaagat
      541 atgaggtttt gaaaattttt caagttattt gtaaactgat actcactata tttgtcaata
      601 acggtttcta ttaattttta taatattgca acatatacct agtgagcttg ttgattatat
      661 aagcaacaat tttcgatatc cagcgggaat aatcgggtgc cgggcaacta atcctgaaat
      721 gtcacttgat tgttgcgaat atgacatcgc tatttttaac aaacaatcgg cgggcaatag
      781 atttatccga ctaggtaatc atggactaga attgatttct ctaacggaaa catcaaggat
      841 caatgtgatg aaattacata atatgattat aatacaggat gatgatagtt ttagtctatc
      901 atcagccaat aatgtccctg gttatcaaaa atattatctt agagtcctaa gagaccttgg
      961 aaaaaaatcg ataataaatt cattatttta tcacgaaaaa attactaaaa atattcagag
     1021 aaattctgta ttagctgcta tgtggctaaa aatagctgca tatgattttc tggaaggcat
     1081 attagcattg tctgaaatta aaccaatgcc tatacatgaa ttaaatcaga taagaaagat
     1141 aactatagag cgccaagaga ttgctgaagg tgtaaagata gccttagaat gtgtaggatt
     1201 agaacgagcc acaagatcta ccatatctag gtctatcgaa gcaatatgtg aattaaattc
     1261 catggattat gataaagaat tgataaagat aaaagtgaac cacttgcttg aaaaaggaat
     1321 ggtatctgat tgttattatt accttggtaa aatggggcat agatgcctag tctacagaga
     1381 ttatgaattc ctgagcaaat acaggaagtt gatacagata tctatggatt taacaaatga
     1441 tatgcaacaa ttagaaaagt tgcacatcaa ccttgcgagt ataagtaaaa ttatactaaa
     1501 aaaactatcg cac
//
LOCUS       DATAAS010000183         3123 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_725599, whole genome shotgun sequence.
ACCESSION   DATAAS010000183 DATAAS010000000
VERSION     DATAAS010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3123
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_725599"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            158..1252
                     /locus_tag="VHF08_02930"
     CDS             158..1252
                     /locus_tag="VHF08_02930"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2067632.1"
                     /translation="MFKKMINANNEIYSGKKDPLKTVFLVWAPHSIRAKNLTEHLDAK
                     LYLISYKFKKKIYSPIKYIKLFINTLLILKKEKPQIIICQSPPIFCALATIIYQYLTS
                     TKCNIAIDMHTGAFDKPWSYLQPLNRWIMKKVYMIIVTNSELKDSVCSDIKRKIIVLE
                     DPLSSFEIERKTTHYEGLEKNDKFFKIAVISSFAPDEPLEEILDAAATMSEVLFYITG
                     DISKAAKHLLEKKANNVIFTGFLDYNDYVSLLQSVNVIMVLTKRNKTMLAGAYEALAL
                     QKPLITSDWPPLRRYFYKGTVHVDNSLKEIQEAIEIVRKRSEEMVRDIGDLRSEKNKE
                     WNKKFTTFKHLLENEKIFKQYQKINVVDNN"
     gene            complement(1382..2476)
                     /locus_tag="VHF08_02935"
     CDS             complement(1382..2476)
                     /locus_tag="VHF08_02935"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2067633.1"
                     /translation="MPGCGEHVGLHSIKALDEMGCKVFLCASAYPKKEETIKRIGIDI
                     EDSIDGFVKAIGRNEILPFLGAYQRMVYTYSFFKKLIKEHKLDFVFVTGGSTLIPKSM
                     ADKTIVYVHYPVDLEVTHQRYLNNKMKKIYIKPWLFISNNVDYIKRSTIITNSNYTKD
                     AIKAAWGIDATVIFPPCPQYSFPFADQVKKNIVCSLGRFTPEKNYETILQIAQRQSNI
                     QFELIGSITPDKLSYLEKLRNNAPRNVIFHVNASIEEKIEVLKRSKVMLHSFIGEHFG
                     IALIEAMSAGLIPVTHDSGAAKADGLVPSKYRYNDIDEAVASITDAFSSWNIDEAQRL
                     REYAMRFSAESFRANIKSFISDWIKSNYLS"
     gene            2858..>3123
                     /locus_tag="VHF08_02940"
     CDS             2858..>3123
                     /locus_tag="VHF08_02940"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067634.1"
                     /translation="MSLKHYGGIMQWAGRRFWESRQFYSAYIALFVAITNWITIQYRL
                     LLENVPVLNVIFSNIWVFMIAATIVFTIVSILGGHYIHRKRQFR"
BASE COUNT         1072 a          504 c          501 g         1046 t
ORIGIN      
        1 tttggattta ataattggaa ttattatgct cacgacagat cactttatta aaaaattgac
       61 tgataacatc tagtatctaa ataatattga tatatatatt actataaaaa taattatatt
      121 tttatgcgct ttaactaact ataagtttat ggtaattatg tttaagaaga tgattaacgc
      181 taataatgaa atatactcag gcaagaagga tcctctaaaa acagtattcc tagtttgggc
      241 tccccatagt atcagagcaa agaacctaac tgaacatttg gatgccaaac tgtatttaat
      301 cagttacaaa tttaaaaaga aaatatattc accaattaaa tacatcaaat tatttataaa
      361 tacattactt atattaaaga aggaaaaacc gcagataata atttgtcaaa gccctcccat
      421 attttgtgcc ctagctacca taatctatca gtatttaact agcacaaaat gcaatatagc
      481 aatcgatatg catacaggag cttttgacaa gccttggtca tatcttcaac cgttaaacag
      541 atggatcatg aagaaagtat acatgattat cgttaccaat tctgaattaa aggatagtgt
      601 ttgttctgat attaaaagga agataatagt attagaagat ccactttcaa gctttgaaat
      661 agaaaggaaa acaacgcact acgagggatt ggagaaaaat gacaaatttt tcaagatcgc
      721 tgttatatca tcctttgcgc ctgatgaacc attggaagag atccttgatg cagctgctac
      781 tatgtctgaa gtgctatttt atattactgg agacatatcg aaagcagcca aacatcttct
      841 agaaaagaag gcaaacaatg taatctttac tggattttta gattataatg attatgtctc
      901 tttacttcag agtgttaatg taataatggt tcttacaaag agaaataaga cgatgttagc
      961 aggtgcatat gaagcacttg cgcttcaaaa acctttaata acttctgact ggcctccact
     1021 gaggcgatat ttctataaag gtacggtgca tgtagacaat tctctcaagg aaatccaaga
     1081 agcaatagaa attgtccgaa agagatcaga agaaatggta agagatattg gtgatttaag
     1141 aagtgagaag aataaagaat ggaataaaaa atttaccact tttaaacatt tacttgaaaa
     1201 cgaaaagatt ttcaagcagt accaaaaaat taatgttgtt gataataatt aagagacatg
     1261 ttaactatta tatgactcct acataactac aacttgtgta aggatgatag caactctata
     1321 tatattgagt taaatatgaa atgtattacg ttatccttgg cgaactggct ctcaatattc
     1381 tctaggataa gtaatttgat ttaatccaat cggatatgaa tgactttata tttgctctaa
     1441 aggattctgc tgaaaacctc atggcatatt ctcgtaatct ctgagcttca tctatattcc
     1501 atgaagaaaa tgcgtcagta attgatgcaa cagcttcatc gatatcattg tatctatatt
     1561 tactaggcac aagaccgtca gctttcgcag cacctgaatc atgtgtcact ggaatcagtc
     1621 cggcgctcat ggcttcaata agcgcaattc caaaatgctc tcctataaag ctatgcaaca
     1681 taaccttcga tctctttaaa acttctattt tctcttctat gctcgcattt acatggaata
     1741 tgacatttct tggtgcatta ttccttagtt tttcaagata tgaaagttta tctggagtaa
     1801 tgcttccaat aagttcaaac tgtatattag attgtctttg tgcaatttga agtatcgtct
     1861 catagttttt ctctggtgtg aaccttccta aagagcagac aatatttttt tttacttgat
     1921 ctgcaaatgg aaaagaatat tgtgggcatg gtggaaatat tactgtagca tcgattcccc
     1981 atgcagcttt tattgcatct ttggtgtaat tgctatttgt aattatggta gatcttttaa
     2041 tataatcaac attatttgaa ataaatagcc aaggtttaat gtaaatcttt ttcattttat
     2101 tatttagata acgttgatgc gtaacttcta gatcaacagg atagtgaacg tagacaatgg
     2161 ttttatctgc catagacttt ggaataagag ttgatcctcc agttacaaaa acaaaatcaa
     2221 gtttatgttc tttgattagt ttcttgaaga aagagtaagt gtacaccatc ctctgatagg
     2281 ccccaagaaa tggaagtatc tcattacggc caatagcctt tacaaatcca tctatcgagt
     2341 cttcgatatc aattcctatc ctcttgatag tttcttcctt ttttggatat gcacttgcac
     2401 aaagaaaaac cttacatccc atttcatcca gtgctttgat agaatgtagg ccaacatgct
     2461 cgccacatcc gggaatctac tgattctctc cgtaggcttc catgttatag tgcacgactc
     2521 cagctctaat aaatgcacta tttaaaaaat gggtcttctt atgtctcatg atctattgct
     2581 tagatagctt attatatata tacaataaat agaattatct aaaatcttga aaattttctt
     2641 ctcatagtaa ttccttttct gtgtattcta aaataaaaaa atcgtataag ccatatggaa
     2701 gaggaaatca tataaagaag agtcaaagct aagaaagttt ttattctcat attaccaaaa
     2761 aatgccaatc attttatttt aaagttgccg tattctaata aaacacaatc ttttccaaaa
     2821 ctatataatc aaaagaggat tgaattaact tgaaattatg tctcttaagc actatggtgg
     2881 aataatgcaa tgggcaggac gtagattttg ggaatctagg cagttttatt cagcgtatat
     2941 agcattattt gttgctataa caaattggat tacaattcag tatagactac ttttagaaaa
     3001 tgtccctgtt ctaaatgtca tattctcgaa tatttgggtt tttatgattg ctgctacaat
     3061 tgtttttacc attgttagca tacttggtgg tcattatata catagaaaaa gacaattcag
     3121 gtt
//
LOCUS       DATAAS010000184         2574 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3416980, whole genome shotgun sequence.
ACCESSION   DATAAS010000184 DATAAS010000000
VERSION     DATAAS010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2574
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3416980"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..246)
                     /locus_tag="VHF08_02945"
     CDS             complement(<1..246)
                     /locus_tag="VHF08_02945"
                     /inference="COORDINATES: protein motif:HMM:NF013178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase domain-containing
                     protein"
                     /protein_id="HEX2067635.1"
                     /translation="MHTLESKYTGYNAKLILEDGSLFTGVGFGHPCDEIAGEIVFNTG
                     MVGYTEAITDPSYRGQILCMTYPLIGNYGVPSYEVKDE"
     gene            complement(1157..2053)
                     /locus_tag="VHF08_02950"
     CDS             complement(1157..2053)
                     /locus_tag="VHF08_02950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEX2067636.1"
                     /translation="MLTVFGTIALDTTRTPFRTEIKIMGGAATFASLSSSFYTHTSLV
                     GVTGFDFPSHYREILDKRVDTKGIITNLHEKTFHYDSTFDYGLSHRTTNKTELNVISH
                     FEPTIPDEYQKSEYIYLANNDPIQNIKLLEFFPNPKLTVCDTIEYWILNKRDEVIKMM
                     SKVNGVVINDEEARLLCKTTNLIKCAKMIMSWGPHFTVIKKGEHGSLLFMDDSIFPAA
                     AYPMEEIVDPTGAGDAFAGGFIGYLAKQDNLRIRTFKEAVVHGNVMGAFAVEDFGVKR
                     LLSITKDDIQKRFEIYRKIVEF"
     gene            2154..>2574
                     /locus_tag="VHF08_02955"
     CDS             2154..>2574
                     /locus_tag="VHF08_02955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0006725 - cellular aromatic compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HEX2067637.1"
                     /translation="MRLIVAITGSSGVIYGIKTLEVLRDLKLESHLILSEWGKRNVTI
                     ETDKSIDYVKSLAFKYYSNDNMAAAISSGSFKTDGMVIIPCSMKTLSSIANGYDDNLI
                     SRAAGVCIKESRKLVIVPRETPLSRIHLENMLKLSQTG"
BASE COUNT          880 a          425 c          431 g          838 t
ORIGIN      
        1 ttcatctttt acctcataac taggaacacc gtaatttcca ataagtggat aagtcataca
       61 taatatctga cctcgatagg aaggatcagt gattgcttcc gtgtaaccta ccattcctgt
      121 attaaatact atttctccag caatctcgtc acaaggatgg ccaaacccta cgcctgtaaa
      181 taaactacca tcttccagta ttaattttgc attatatcca gtatatttag attcaagagt
      241 atgaatttta aacccttaaa atctgcttca aatagggaat ttaagttttt gctctgatat
      301 gatggctgcg ttagtttaac tatgaagcta ataatgttat tgaaagaaga tttgttcaat
      361 atatgaagag gatacaacct aaagtttaga tgtaatatat aattatactt tctataaaaa
      421 agaaaaaaag atgcaaaaac tagtagagca cacacacaat aaatgaatga cacgtatcgt
      481 atgtcagctt atcattttta agaaacatgg taaaaaagat caacaaaaag taaaattata
      541 aaaactagta gaatttaacg tatctaataa atgaaaccat ttcgtgaaaa tttcctgaaa
      601 tgtttcacca cttttttaca tacccttttt tgacaggcta atttataata tctagagtag
      661 tttctaggga ctaaccaatg taggaggaaa acgtcaccat ttagcagaaa caatatcata
      721 taaattagtt agattcaaaa ttatagatta agaatatata ataatgtttg caatatcagg
      781 tgggtatatt tattatcaga atgtagttgt tcattggatg caagttaagt aggaagagag
      841 gatgtataga taattaatta aatattttac tagaataagt cgattattca aaatgctatg
      901 tcattctatc tagcattgtt ttatagaaca gaaacctttt tgatgataac tatttcttct
      961 tgtaagaaag agcgaaacag tatcgtagaa caagtaatac ataggttcaa tctgtttgtt
     1021 gattttcata atgagatgac ttttaaaaac atggtttagt gaggagaccg agaaagacac
     1081 aaatgtttat tcgtcatatc agccaaattt actcctcgaa tgtcttaatt taatgtttat
     1141 tatagctaaa gaaatactaa aattcaacaa tcttgcgata tatctcaaac cttttctgaa
     1201 tatcgtcctt agtaatggaa agtagtctct tcaccccaaa atcctcaaca gcgaatgctc
     1261 ccataacatt tccatgaact actgcttcct tgaaggtcct gattctgaga ttatcttgtt
     1321 tagcaaggta accaataaat cctccagcaa aagcgtctcc tgctccggtc ggatccacga
     1381 tttcttccat tggataagcc gccgcaggaa aaatagagtc gtccatgaac aacaatgaac
     1441 catgctctcc cttttttata actgtaaagt gtggtcccca tgacattatc attttggcgc
     1501 atttaatcag gttagtcgtc ttacacaata atcttgcttc ttcatcgtta atgactactc
     1561 cattaacttt actcatcatc ttaattactt catcccgttt gtttagaatc caatattcga
     1621 tcgtatcaca aacagtcaat ttgggatttg gaaaaaattc cagtaacttt atgttttgaa
     1681 taggatcatt attagcgaga taaatgtatt ctgatttttg atactcatcg ggtattgtag
     1741 gttcgaaatg tgatattaca ttcaattctg ttttattagt agttctatga gaaaggccat
     1801 agtcaaacgt agaatcataa tggaatgtct tttcgtgtag gttagtgata attccttttg
     1861 tatctactct cttgtcgaga atttctctgt aatgacttgg aaaatcaaaa cctgttactc
     1921 ccactagcga agtatgtgta tagaagctag atgaaagaga tgcaaaggtg gcggcacctc
     1981 ccataatttt tatctcagtt ctaaaaggtg tgcgagttgt atctaatgca atggttccaa
     2041 agactgttaa catgccccaa agtcaaggtt ttctttctac gtaaataaac cttgattctc
     2101 ttcaatatat tatatgatca aatatatatc aaaataagcg cgcaattgaa gtgatgcgac
     2161 ttattgtagc aataaccggc agttcgggtg ttatttatgg aattaagaca cttgaagtat
     2221 tgagagatct taagctagag tcacatttaa tcctaagtga atggggaaag agaaacgtta
     2281 caatagaaac tgataaaagt atcgactatg tgaaatcgct tgcttttaag tattacagca
     2341 atgacaatat ggctgctgct atttccagtg gatcttttaa aacggacggg atggtaatca
     2401 ttccatgtag catgaaaaca ttgtcaagta ttgcaaatgg ctatgatgac aatcttatat
     2461 ctagggcggc aggagtatgt ataaaagaat cacgaaaatt agtaattgta ccaagggaaa
     2521 cacctctttc tagaatacat cttgaaaata tgcttaagct atctcaaaca ggcg
//
LOCUS       DATAAS010000185         7241 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1809846, whole genome shotgun sequence.
ACCESSION   DATAAS010000185 DATAAS010000000
VERSION     DATAAS010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7241)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7241)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7241
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1809846"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1114
                     /locus_tag="VHF08_02960"
     CDS             <1..1114
                     /locus_tag="VHF08_02960"
                     /inference="COORDINATES: protein motif:HMM:NF014878.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067638.1"
                     /translation="REARKYGSGFVVTASHNPFEWNGLKFIIKGRGIFEDELHTMLKK
                     TAFSSESAATTTTTSSTAKLGRSFDCVSGYVNEIVNFVGKSTYNRTLKLGLDLGGGAT
                     CGYANHLFKKLGSKFYSINDVHGVTSRGPDPTADYLNELCMLVIANELDFGFAFDLDG
                     DRLVVVNRMGEKLSSDATLLICIASAINLGMKKFVMSIDSSIAIEKFIKDHGGRFDFS
                     KVGEANVVSKMLEVDAEAGGEGSSAGFIMPKFNMCRDGFLASAIISSLDKKEIDEYLD
                     FSSQYVQIRSKISVDSSFHRKVIEKLTDSFTAESSAVLTIDGIKAIVDDDTWILVRPS
                     NTEHAIRISIESKKANIQSLYKKTREKVQFTYDQIK"
     gene            1098..2138
                     /gene="thiL"
                     /locus_tag="VHF08_02965"
     CDS             1098..2138
                     /gene="thiL"
                     /locus_tag="VHF08_02965"
                     /EC_number="2.7.4.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR01379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009030 - thiamine-phosphate kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEX2067639.1"
                     /translation="MTKLNEKEIIDLFISKLKPDNTITEFGKDDVAILSLKDAKTSKN
                     NIFCPICIILKCDMLVGNTDVPTGMKPWQIARKSIVSCVSDLSAKGIKPPYLSLISIG
                     IPRRYSKNEIKDLIIGFQTASKEFGIKIVGGDTNESNELIIDCNMLGFSDINAAARIP
                     RRSGAKPGDLVVVSGEFGYSSSGLKILIEDAKSHGIFKKNAILSVIKPKPQQKFGIAL
                     AKYFSSSIDSSDGLATSLYELARQSKVNILIENIPLAKGVVDFAQNNHLDAKELVFHG
                     GEEYEIIATIPKSKLNRIKTVARKSKLKLLVIGKVEKGDGKVFLTNGNETWKEVTLLD
                     DRGYVHLIGKSQ"
     gene            complement(2649..3422)
                     /locus_tag="VHF08_02970"
     CDS             complement(2649..3422)
                     /locus_tag="VHF08_02970"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HEX2067640.1"
                     /translation="MENKKKIIISVLLVISLSLLSPTTIMYIQTASAIFHENLFGGSN
                     TKPGDVTEDKPANTTTTGSSAQTSTPKDDNIKGSAEEDVLVGLAGNDVIDGQRGNDNI
                     DGSEGDDYLISGQGADTINGGVGNDVIEGNTGNDNINGSEGDDYLIGGLGRNTLNGGV
                     GNDTLVGGPNSDTLTGREGQDIFVCNQGNDKVLDFNATDGDIRLNGCEDDDMTGKQTS
                     NGNVTGTANMTARRSNNTITINETAEPGETGDILSDLLA"
     gene            3758..5233
                     /locus_tag="VHF08_02975"
     CDS             3758..5233
                     /locus_tag="VHF08_02975"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008452 - RNA ligase activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HEX2067641.1"
                     /translation="MSELVTKSGNHRVRKINDFEFMIEKDTSKGMNVPVTIYANDSLI
                     SKMVIDRTIDQAVNVSTLPGVRKHVVVLPDGHEGYGFPVGGVAATDLEHGIISPGGVG
                     YDINCGVRLIRTGLFERDLRPKLKDLVNGLFSSIPSGVGSEGSVKLTKSELDELLVEG
                     VHWAIDRGYGWKEDAEVCEENGKIIGADSAKISETARKRGTSQLGSLGSGNHFLEVQK
                     VDKIFDERAAESMGINKEGQLTVLIHCGSRGFGHQVCSDYLRISEIAVRKYGMKLADR
                     ELACVPNSSSEGEDYRKAMFSALNFAWCNRQMITHWTRKLFEKVFNMTEGQLDMKLVY
                     DVSHNIAKLERHKVEGEGMQDLVVHRKGATRAFPAGMDQIPNKYRNIGQPVIIPGSMG
                     TASWILLGNRNSLDLSFGSTAHGAGRTMSRSAAKRSYTAEGVRGGLQSKGIYVKALTK
                     EGMVEETPDAYKDVDAVVEVSHSLGIATKVVRLIPIGVIKG"
     gene            5233..5652
                     /locus_tag="VHF08_02980"
     CDS             5233..5652
                     /locus_tag="VHF08_02980"
                     /inference="COORDINATES: protein motif:HMM:NF014086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEX2067642.1"
                     /translation="MSQEDPDIAIIKARKMKELRDKAAAFEKAKKREQQPTPQKDNDR
                     EIISTYLYDRGEEVLKLAESQYPYQTKAILARIIELIKAGEISQRISGGELLALFRSI
                     GLKIRINTSIKIEDHGKLVSLSDKLKQQNEDMTDDNS"
     gene            complement(6368..6799)
                     /locus_tag="VHF08_02985"
     CDS             complement(6368..6799)
                     /locus_tag="VHF08_02985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEX2067643.1"
                     /translation="MINIQLLMSSETEDITQYKWGVAHIFSSYNNTLVHITDTSGAET
                     ISFSSGGRHVTADRYESSPYAAMKSAVASSDAAKAKGINALHIRVRAVGGVGPRIPGP
                     GAQAAIRALARAGFRIGRIDDVTPVPHDTTRKPGGRRGRRV"
BASE COUNT         2485 a         1124 c         1368 g         2264 t
ORIGIN      
        1 cagagaggca agaaaatatg gttcgggttt tgttgttact gcgtcacata acccttttga
       61 atggaatgga ttaaaattca taataaaagg tagaggaatt tttgaagatg aactgcatac
      121 aatgctaaag aaaactgcat tctcatcaga atcagcagca acaacaacaa caacatcttc
      181 tactgccaaa cttggcagat cttttgattg cgtttcagga tatgtaaatg agattgttaa
      241 cttcgtaggg aaatcaacgt ataatagaac attaaagctc ggacttgatc tcggtggtgg
      301 agccacatgt ggctatgcta atcacttgtt caaaaaactt ggtagcaaat tttatagtat
      361 aaatgatgtt catggcgtaa cttcaagagg acctgatcct actgcagatt atcttaatga
      421 attgtgcatg ttggtcatag caaatgagct tgactttgga tttgcatttg atttagacgg
      481 ggatagactt gtcgtagtta atagaatggg tgaaaaatta agctctgatg ccacactttt
      541 gatttgtatt gccagtgcaa ttaatttagg aatgaaaaaa tttgttatga gtatagattc
      601 tagtatagcc atagagaaat ttataaagga tcatggcgga agatttgatt tttccaaggt
      661 tggtgaagca aatgttgtta gcaaaatgtt agaagttgat gctgaggcag ggggagaagg
      721 aagtagcgcc ggctttatta tgccaaaatt caacatgtgt agagatggat tcttggcaag
      781 tgccatcatt tcatccttag ataagaaaga aatagatgaa tatcttgact tctcttctca
      841 gtatgttcaa attagatcaa aaatatctgt agattcatct ttccacagaa aagttattga
      901 gaaattaact gattcattta cggctgaatc atccgcagtt ttgacgatcg atggtattaa
      961 ggctatagta gatgatgata cgtggatact tgtaagacca tcaaatacag aacatgctat
     1021 cagaatatca atagaatcca aaaaggcaaa tatacaatct ttgtacaaga agacaagaga
     1081 aaaagttcaa tttacatatg accaaattaa atgaaaaaga gattatagat ctttttatat
     1141 ctaaacttaa accagataat acaataactg aatttgggaa agacgatgtt gcaatacttt
     1201 ctctaaaaga tgcaaagact agtaagaaca atattttttg tcctatatgt atcatattga
     1261 aatgtgatat gcttgttggg aatactgatg tcccaacagg aatgaagcct tggcaaattg
     1321 ctagaaaaag catcgtctct tgtgttagtg acttatcagc aaagggcatt aaaccgccat
     1381 atctatcctt aatttccatc ggaattccaa gaagatactc taaaaatgaa attaaagatc
     1441 tcataattgg ctttcaaaca gcatctaaag aatttggaat caaaattgta ggcggggata
     1501 ctaatgaatc taatgaatta ataatagatt gtaatatgct tggattttca gatattaatg
     1561 ctgcagccag aattccaaga agaagtggtg caaaacctgg agacttggtc gttgtttctg
     1621 gagaatttgg ctattcatca tccggattga aaatccttat agaggatgca aaatctcatg
     1681 gcatatttaa aaaaaatgct atcctatcag taattaaacc aaaacctcaa caaaaatttg
     1741 gcattgctct tgcaaaatac ttttcttctt ctatagattc aagtgatggt cttgctacgt
     1801 ctctttatga attagcacgt cagagtaaag ttaacattct aatagagaac ataccattgg
     1861 ctaaaggagt tgtcgatttt gcccaaaata atcatttaga tgcgaaagaa cttgtatttc
     1921 atggaggaga agaatatgaa ataattgcaa ccataccaaa atccaaattg aataggatta
     1981 aaactgtcgc tagaaaatca aaattgaaat tgcttgtgat aggtaaagta gaaaaaggag
     2041 atggcaaggt atttctgaca aatggtaatg agacttggaa agaagtgacg cttcttgatg
     2101 accgtggtta tgttcattta attggaaaaa gtcaataggg cttcaacgcc tttgaaaatt
     2161 ctctacttta cagtcgatgc attagaggcc aagaatgtta attatctatc tatccataga
     2221 tattatacta ttatttcttc actattgtca tttctgtgaa caagagaaaa tttagtatta
     2281 ttatcttgct aattaaatgc taaataaaaa acttgaataa atattataaa tcctcagata
     2341 gcaagacaag gatatattta aaatatgtca ttctgagatg aaacttcgaa aaccaaaata
     2401 agaactgaat actatttttt tattataatg ttaatagagt tatgtcaatt cggaactaat
     2461 actaacaata tcaaaaatta catagacata agatagagag aagaatattc taatgattta
     2521 gaaactcctt gtttagtatt gacattattt ccattttctt taattgtctc gtatatgtac
     2581 catagtttcc gactttactg aaatatacct ctgattcaat aatccatata ccttcttttt
     2641 ctaaggtgtc aagctaagag gtctgacagt atatccccgg tttctccggg ctctgctgtc
     2701 tcatttatag tgatcgtgtt attgctgcgc ctagccgtca tatttgcggt acctgtaaca
     2761 ttaccattac tggtttgttt gcctgtcata tcatcatctt cacagccgtt taatctaata
     2821 tctccgtcag tagcattaaa atctaagact ttatcatttc cttggttaca gacaaagata
     2881 tcctggcctt ctctaccagt aagagtatca gagtttgggc caccaacaag agtatcgttt
     2941 ccaactccac cattaagagt attgcggcct agaccgccaa ttagataatc atctccttca
     3001 gaaccattaa tattgtcatt tcctgtatta ccttcaatta catcgtttcc aactccacca
     3061 ttaatagtat cggcgccttg gccgctgatt agataatcat ctccttcaga accatcaata
     3121 ttgtcatttc ctctttgtcc gtcaattaca tcgtttccgg ctagacctac taaaacatct
     3181 tcttcagctg aaccttttat attatcatcc tttggagttg aagtctgtgc ggaactacca
     3241 gtcgtcgttg tatttgcagg tttgtcctca gttacatctc ctggtttagt gttgcttcct
     3301 ccaaatagat tttcgtgaaa aatggctgat gccgtttgta tatacataat ggtagtaggt
     3361 gataacaatg aaagtgaaat taccagtaat actgatataa ttatcttctt cttattctcc
     3421 attgcgatac tttaatcatg aaaagataaa ggctttttaa atcttcttgc tttacatcta
     3481 ttgcatatac aaaactaaaa gaaaaataat aaatagagag aggataactt aattttcttt
     3541 catatgctct aataataagt atcatgtcga actaaataat actatataat gtaattctta
     3601 atactcattt tcataatgta gttactcaga tttagatgcg attattgaaa tcaaaagata
     3661 agaaaaaata atcgattttt tgtgattggg tattttgaca gattgatatc tcgaaggtaa
     3721 ggcttataat aactacggct caaattcaaa tcgtataatg agtgaattag taacaaaaag
     3781 tggtaaccat cgagttagaa aaataaatga ctttgaattc atgattgaaa aagacacatc
     3841 taaaggaatg aatgttccgg ttacgattta tgctaatgat agtcttattt cgaaaatggt
     3901 tattgatcga actattgatc aggcagtaaa cgtctctaca ttgcctggcg tgagaaaaca
     3961 cgttgtggtt cttccagatg gacatgaagg ttatggattc ccagtaggag gagtcgctgc
     4021 aactgaccta gaacacggca taataagtcc agggggggtt ggatatgata ttaattgcgg
     4081 cgtaagactg attagaacgg gcttattcga aagagatcta agaccaaaat taaaagatct
     4141 tgtaaacggt ctctttagct cgatcccgtc aggtgttgga agtgaaggat ctgttaagtt
     4201 gacaaaatct gaactagatg aattgcttgt agaaggtgtg cattgggcta ttgatcgtgg
     4261 atacggttgg aaagaagatg cagaagtctg tgaagaaaat gggaaaataa ttggggctga
     4321 ctctgcaaag atttcagaga cagcaagaaa gcgtggcacg tctcaattag gtagcttagg
     4381 ttcaggcaat cattttcttg aagtacagaa ggtagacaaa atcttcgatg aaagagctgc
     4441 agaaagtatg ggtattaata aagaaggaca gctaacagtt ctaattcact gcggatcgag
     4501 gggatttgga catcaggtat gcagcgatta tttacgtata tctgaaatcg ctgtgcgaaa
     4561 gtatggaatg aaattagcgg atagagaact tgcatgtgtt ccgaatagtt cgtcagaagg
     4621 tgaagattat cgtaaggcaa tgttttcggc attaaatttt gcatggtgta accggcagat
     4681 gataacacac tggacaagaa aactttttga aaaagtattt aatatgaccg agggacagct
     4741 tgacatgaaa ctagtttacg atgtatctca caatattgcc aagctggagc gccataaggt
     4801 agaaggcgaa ggtatgcaag atttagttgt tcatagaaaa ggagctacaa gagcatttcc
     4861 tgcaggaatg gatcagattc ccaataaata tcgcaatatt ggtcagccgg taattatacc
     4921 gggctctatg ggaactgcaa gctggattct tctaggaaat agaaattctc ttgatttaag
     4981 ttttggatca acagcacatg gtgctggtag gacaatgtca aggtctgcgg caaagagaag
     5041 ttataccgca gaaggtgtaa gaggcgggct gcaatcaaaa ggtatctatg taaaggcact
     5101 tacaaaggaa ggaatggtgg aagagacacc tgatgcatat aaggatgtag atgcagttgt
     5161 agaagtttca cattcgcttg gaatagcaac taaagtagta agattaatcc caattggagt
     5221 gataaaaggg tagtgtcaca agaagatcca gatatagcta ttatcaaggc cagaaagatg
     5281 aaagaactac gagacaaggc tgctgcattt gaaaaggcaa aaaaaaggga acaacaacca
     5341 acacctcaaa aagataatga tagagaaata atatctacct atctatatga cagaggagaa
     5401 gaggtcttaa aacttgcaga atcccaatat ccctatcaga caaaagcaat acttgcaaga
     5461 attatagaat tgattaaagc aggtgagata agtcaaagaa tctcaggtgg agaattactt
     5521 gctttattcc gatctattgg attaaaaatt agaattaata ctagtatcaa aattgaagat
     5581 catggaaagt tagtttcatt atcagataaa ctgaaacagc aaaatgaaga tatgactgac
     5641 gataatagct aataatacca attattagta cggttatcct tgattctcaa ctactaattt
     5701 tgaagctgat tcaagatgac aatatatttt tgaatgcata gtttgttgaa aaaaatttta
     5761 tataatctcg attagtcgat agtgacaagt caagagacga gaagtgtgaa aataatttta
     5821 atttttctgt tttataaaaa aagcatgtgt aaagcataga taaaatcttt cagaaataag
     5881 aaaaaagaat atactactgt gattgctgtt ccctcttaag actcgcattc tacaattgaa
     5941 tattgaatat tatatttctc ctattatgaa tagatgcgaa atatttctat gtattcttaa
     6001 aattttcagt ttttgattac tctattcaaa tagatactta tcaaagtatt gctgggaact
     6061 tgctgtttat tgtgattgag cctttaagcg ttcatatgct atacaaacaa taagtttctt
     6121 ttaatgaaag tgtaattttt tagttttaat cagaaaaaga acaatttaat aagattgtag
     6181 agttctgggt tctgtaaaaa gcaactaata taaaattaag gaatcccaag aattttatta
     6241 ctataaagta gtggatgaaa aaaggacgcc ataacaccta gagtaatatt ttgctgtaat
     6301 ctttaccaag ataatgtttc ttgaaatgtg taaagaccaa atttaattta tgcagtaagg
     6361 gaggatatta tactcttctt cctctccttc caccaggctt tctcgtagta tcatgaggaa
     6421 ctggagtaac atcgtcaatt ctgccaattc taaaaccggc tcttgccaag gctctaattg
     6481 ctgcttgagc tcctggacct ggaattctag gacctactcc accaacagct cttactcgta
     6541 tatgcaaagc attgattccc ttagccttgg cagcatcaga ggatgctacc gcagatttca
     6601 ttgcggcata cggagatgat tcatatctat ccgctgttac atgccttcca cctgagctga
     6661 atgaaatcgt ttctgctcca ctagtgtctg taatatggac aagagtatta ttataactac
     6721 tgaagatgtg agctactccc catttgtact gagtaatatc ttctgtttct gaggacatta
     6781 agagctgtat atttatcatt ggagttatat gaatgttaga ctatattgat gaaaaattaa
     6841 gatttcgtat atccgtttca tgcatcctat tcagatatac tatcgtaggt attctaaata
     6901 aataaataaa tagatacttt gcatacatta cataaatata atttacatct atgaagatca
     6961 ttgcccacag cataaactaa aatgttatct tgaaaacaga agattatggt tgggtattat
     7021 agacatgtac tgtaagaagc ataatttttc attaattatg gcatataaaa ctaaattcgt
     7081 ttagaattgc cgataatatc aataaaattt aagtgaatta gtattctgac attcatacct
     7141 cttttttatt ctattgcaat atgttatgtt tttagcgtgg atgaacgaag tatatgtaag
     7201 aaaatatgtt tacaggcatc atcgaagatg ttgtcgaggt a
//
LOCUS       DATAAS010000186         3837 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_184642, whole genome shotgun sequence.
ACCESSION   DATAAS010000186 DATAAS010000000
VERSION     DATAAS010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3837
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184642"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(580..972)
                     /locus_tag="VHF08_02990"
     CDS             complement(580..972)
                     /locus_tag="VHF08_02990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067644.1"
                     /translation="MDDFERDFPNLDWKNIPAYKHPGGKNCPCPKHEYIREQINIAKA
                     VSNNNREIVPEQRQKAQVILKFCPDHYSVYFGEVIPSMPFKYRLMTKIALKIGAVVVQ
                     RIPYMQSDQCFYCKFGSGGFDKKTLIVP"
     gene            1123..2139
                     /locus_tag="VHF08_02995"
     CDS             1123..2139
                     /locus_tag="VHF08_02995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067645.1"
                     /translation="MARDNYSAGTSSAATATTTAARNNTIKSTQNDSDSNLNTLLGFK
                     KSLVEQQRTGEMKIQELNNKIEDTKKQIDEERIELENLRVKLKQINDQKDAEYSKFTE
                     LKSNLIEAKNQMRSLDEKAGPAGLSKSRRERFDLANLTKAFEQIERDIQTKKLSKDEE
                     RKLVAKSKEIATRLYALKIIHKKEDRYRNISSQYDTIKAKMNGIFDLKSELGNKIGEL
                     KKSLDILLNLRESLYEERRKIIREVREAAAKLEMVETQLNAIEFRRSRIQASEYRQRK
                     QKESGERRESRYEVAQERAKRSKENQERWNTLKEAALKKMSSGEKLTFEEMKLIFGDS
                     NNPD"
     gene            2232..2693
                     /gene="pyrI"
                     /locus_tag="VHF08_03000"
     CDS             2232..2693
                     /gene="pyrI"
                     /locus_tag="VHF08_03000"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR00240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HEX2067646.1"
                     /translation="MSDTRQLLVRRIKDGTVIDHIESGKALLVLRTLDITGKEGNVIT
                     VALNVPSSKHDKKDIIKVENKFLEKNETNKLALIAPHATINIIKEYRLVEKRKIQLPD
                     SIIGVFKCPNLKCVTNSDEYIKPVINIIDKEKIVLRCRYCFRTLTINELVS"
     gene            complement(2885..3208)
                     /locus_tag="VHF08_03005"
     CDS             complement(2885..3208)
                     /locus_tag="VHF08_03005"
                     /inference="COORDINATES: protein motif:HMM:NF012365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit C"
                     /protein_id="HEX2067647.1"
                     /translation="MKLQSFSTIAMITGLTLIAAGYLINNAYAQEEATAAAGGSMKFI
                     GAGVAFGLAALGAGIAIGGVGAAGLAAITERPELRSQALVFTALGEAIAIYGIVVAII
                     ILGQS"
BASE COUNT         1416 a          603 c          661 g         1157 t
ORIGIN      
        1 gaaaagatag gtcatgttat caatgtaaaa tttcatcgtt ctttttatct gcattcacca
       61 aatagcaaca ttaaaagctg ttttacacta ttgccaattg tataaaaaat agaagaaaac
      121 ttactttaga ctaatgaaga accatagatc tagtttatag tatgtctttt ttaaaaattg
      181 cagttattag aggattgtct aatagataga gacaagatag tagtaaaggt gattaaagta
      241 taactcattt gcttgttcat ttttattaat tataatgata tctcataact aaggaataga
      301 tagagtaatt ttactggatt ttcatcttcc ctttcaatca aggaagaact ttcaattgtt
      361 ttattgtttc acacctacgt tttgagttgc agtaataaca aagttttcta gataacaaaa
      421 atatctatag ataattctta ttgttagccc gctttaataa ccggtagtta aattatggaa
      481 aagttattcg tcagtttttg ttattgtatc ttaataaggt tttaacaacg tctttaagta
      541 gctattttta tatcctgagt atttctagaa tccacagacc tacggaacta tcaatgtctt
      601 tttatcaaaa cctccagaac caaatttgca atagaagcat tgatcagatt gcatgtaagg
      661 tattctttgg accactactg cacctatttt gagtgcgatt tttgtcatga gtctatactt
      721 aaaaggcatt gatggaatta cttcgccaaa gtatacactg taatgatcag gacagaattt
      781 aagtattacc tgagcttttt gtctctgttc agggacaatt tctctattat tattgcttac
      841 tgctttggct atattgatct gttcacgtat atactcatgc ttcgggcatg ggcaattctt
      901 acctcctggg tgcttatagg ctggaatgtt cttccaatct aaatttggga agtctctctc
      961 aaaatcgtcc ataaacgatc actagtctct tataacgtca tgtcatataa aggtgtggga
     1021 tttaatgtta taagaaaccc atcatccttc cgtccacaat aaaattattg ttcaaaaatg
     1081 agaaaaaata tattcttgaa gttataagaa acgacaagca tcgtggcaag agataattac
     1141 agtgctggaa ctagcagtgc agctactgct actacaactg cggctagaaa taataccata
     1201 aagagcactc agaatgattc agattctaac ctcaatacct tactaggatt caaaaaatct
     1261 ctagtagaac aacagagaac aggtgagatg aaaatacagg aacttaacaa taagattgaa
     1321 gatacaaaga agcagattga cgaggaaagg atagaattag agaatttacg tgtcaaatta
     1381 aaacaaatca acgatcagaa agatgcagaa tactcaaaat ttactgaact gaagagtaat
     1441 cttattgaag caaaaaatca aatgagatct ctggatgaaa aggcaggtcc agcaggatta
     1501 tctaaatcgc gtagagaacg ttttgatctg gcgaatttga ccaaagcttt tgaacaaatt
     1561 gaacgcgata ttcaaacaaa gaaattgtca aaagacgaag agcgaaaatt agtcgcaaaa
     1621 tcaaaagaga ttgctacgag attgtatgca ttaaagatca tacacaagaa agaagatcgt
     1681 tatagaaata tttcgtctca atatgacact ataaaagcaa aaatgaatgg tatctttgat
     1741 ctaaaatcag aacttggtaa caagataggt gaattgaaga aaagcttaga tattctttta
     1801 aatttacgtg aaagtttata cgaagaaaga agaaaaataa tacgtgaagt aagggaagcg
     1861 gcagcaaaat tagaaatggt tgaaacgcaa ctcaatgcaa tcgaatttag aaggtcacgt
     1921 attcaagctt ctgaatatag gcaaagaaaa cagaaggaaa gtggagaaag acgagaatcg
     1981 agatacgaag ttgctcaaga gagagccaaa cgtagtaaag agaatcaaga aagatggaat
     2041 acactaaagg aagctgcatt gaaaaaaatg tccagtggcg aaaaactcac gtttgaagag
     2101 atgaaactaa tctttggtga cagtaataat ccagattaat atctgatttc agatgacaaa
     2161 gttataatgt gagtggaatt attgctatgt atagcaaatt ataattgggc ggctttatca
     2221 tcttatctta aatgtctgac acaaggcagc tgctagttcg tagaatcaag gatggaacag
     2281 taatagatca tattgaatct ggcaaagcat tgctagtatt acgtacacta gatattacag
     2341 gcaaagaggg aaatgtcata accgttgctt taaacgttcc aagtagcaaa cacgataaga
     2401 aagacattat caaagtagaa aacaaatttt tagaaaaaaa tgaaactaac aaacttgcct
     2461 taattgctcc tcacgcaact atcaatatta tcaaagagta cagattagtt gaaaaacgta
     2521 agattcaact tcctgactca ataatcggag ttttcaaatg ccctaatctt aaatgtgtta
     2581 ctaatagtga tgagtatatt aaacctgtta taaatatcat agataaggag aaaatagtat
     2641 taagatgcag atattgtttc agaactctta caataaatga attagtatct tgataaccat
     2701 cgattataca tcgtggccgg cgccattcct tcgctcatgg cgatatctat tgataaagga
     2761 aaagtataat taatccagtt aaaatataga aatatattta acatacatca tttttagatg
     2821 gcacatatat aaagaaatat agatgattgg aggaaatcat ctataaagag gagtattaga
     2881 attcttatga ttgtcctagg attatgattg ctaccacgat accataaatt gcgattgctt
     2941 ctccaagagc tgtaaacact agagcctgtg atctaagttc aggtctttcg gtaatagcag
     3001 caagacctgc tgcgcccaca ccaccaatgg caatacctgc gccaagcgcg gctagcccaa
     3061 aggcaactcc tgcaccgata aatttcatag acccacctgc agctgctgtt gcttcttctt
     3121 gagcataagc attatttatc aaataccctg cagcaattag ggttaggccg gtaatcattg
     3181 ctattgttga aaatgactgt agtttcatat ataaggtaag caagataaaa tgccatattt
     3241 aactataact aaaaggacca aaaaggtaaa tttaatggag aacgaagccg ctaagtatat
     3301 aaaaacttga gcgtgttatg ttatttttta gtatttaatg ctaaccgcta ttatttctta
     3361 atcttcagat gtccgacaaa tcctaacctc acaacattca tcttatttct cattgtcgcc
     3421 gctcctggtc gtcaaaatat aagctttttt cctataatag atggctatta aaactatttt
     3481 taatgtcgtt taattcttat gttataagcc agaaatcacc cttaaatata atgtagtgag
     3541 agagatccta aagaaaatga cctaaccatg ttattattac aaaaattaaa attctatcat
     3601 ttcatgaata taaacatcct ttcttattgt aactatcatt tattatatgg taaagggata
     3661 agaagaaaaa aagaagaata atgaccaata ctaaaagaat tttatcgctt actcatgaac
     3721 aggatgtaga tggattattt tctagtgcaa ttttaaagaa tgcttttcct gatactttag
     3781 tttatcttac aaactatgga cacaaaaata tgcaaagagc tgctaccata atcaaat
//
LOCUS       DATAAS010000187         2057 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1336434, whole genome shotgun sequence.
ACCESSION   DATAAS010000187 DATAAS010000000
VERSION     DATAAS010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2057
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1336434"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1100..1792
                     /locus_tag="VHF08_03010"
     CDS             1100..1792
                     /locus_tag="VHF08_03010"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067648.1"
                     /translation="MHYWVGSFCRVLDKHKPVFPRSVIAVSDIITLIADNGNQIPDKS
                     WMLYLLEIFNTQNIAVELNLICQFDNQDYFEAIFQGVNQYRFKHILPMVGHSYLRQIV
                     MDSQTRLIKYILSDQNTRQSETFGLPLPNMNFGFIAANHFTGIEWWNKISNNPYPVRY
                     IVEISQQMFGLNDPMDSESITYLPHNALIPNSDGSGTKYPISFQNIRIKDDCICYTVQ
                     PGNCYTGIRYKC"
BASE COUNT          731 a          308 c          327 g          691 t
ORIGIN      
        1 cttctctttt tgtatcataa taatgttggt ctatctatct tgacattgtt tgttacaaag
       61 ataatctatg cccattattt cttcttatca cctaacttat ataggtaaat actttttcct
      121 tgcaaataaa tagaaaaagg atacttcatt gccgcggtag agaaaaggag gggagataat
      181 aatatcttat ctaataggaa aataatgatg tcagcaaaat atacgcacaa agttgcacat
      241 agttaaggac aacagttact atcaatataa taacacaatg gcaactacat cagcaaagta
      301 ttactattct cggaagcata tataatgaaa tgataatagt aagaaacacc aaatcaaccc
      361 tagatatgca tttgattctt aatagaaaaa gacaggaaaa agggaagaag catcattatc
      421 aacagaagaa atggccagcc acttggaaga taaaacatta tttaaaagta aatgatgcta
      481 tctttaaact catattcttt ggataggaag ctatcttgat tgctgttttc tgaggcttct
      541 cctttttcaa tattgtttga atcgatagat tttgatagtg agcatttgtg atatgcataa
      601 gaaatttaat aactggcata gtagacgagt attggatcca caattagtta taagatttat
      661 tctctacttg caagtgtgta catttaaagc actagaatta taaaatattg ttgtatatga
      721 catgtctact gaaattaaag aatatgcttg aagattacgg tactcgttta cgacactaac
      781 taaactacat tagagggtat gaagtatgtt cataatgtta cgttagatta aaaggcaaag
      841 gatattgatt cctggagcga ttaacttgca agggtataaa gatacctata ctcaattata
      901 taatagaaat atatgctgat agatcgcata tactttcata gcatccataa ggaatgccaa
      961 attatgataa tagtttttct taatagttaa tctgcttaaa aacattctag acgatataac
     1021 ctatgttaaa taataataag aataaaaaat caatacagat tactttatac atctatacaa
     1081 ttcaaattat ttgatcttat tgcattattg ggtaggttcg ttttgccgag ttcttgataa
     1141 gcataaacct gtatttccta gaagtgttat cgctgtatct gatattataa cactaattgc
     1201 agataatgga aaccaaatac cagataaatc ctggatgctc tatctacttg agatttttaa
     1261 tacacagaac atagcagtcg aattaaatct tatatgtcag ttcgataatc aagattactt
     1321 tgaggctata tttcaaggag ttaaccaata caggtttaaa cacatattgc caatggtagg
     1381 tcattcgtat ctacgtcaaa ttgttatgga tagtcagacc agacttatca aatatattct
     1441 aagtgatcaa aacacaagac aatcagaaac atttggttta ccattaccaa atatgaactt
     1501 tggttttata gccgcaaatc actttactgg aatagaatgg tggaataaga ttagtaacaa
     1561 tccatatcct gtgagatata tagttgaaat ctcacaacaa atgtttggtt taaatgatcc
     1621 aatggattct gagtcgataa cttatctgcc acataatgct ttgataccca atagcgatgg
     1681 atctggcact aaatacccta tttcatttca gaatatcaga atcaaggacg attgtatttg
     1741 ttatacagtt caaccaggca attgttatac tggaatacgc tataaatgtt aatgaaatat
     1801 acaaaggtgt tattctattt acaataatgt gtataaagta gccatataca ttattggcta
     1861 ttgctgccga tcacattgca ttggaaatgt accccaggac agaatagtta agatgatatt
     1921 tgcaatttaa ttttgtagat tagtatatga ctgtaatgct actgctgcag cttattccta
     1981 cttttgtctt tcttcctttt cttgaaaata tactaatcat agcctgtctt tgattctcat
     2041 tagatttatt tgtgatg
//
LOCUS       DATAAS010000188         6340 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_195540, whole genome shotgun sequence.
ACCESSION   DATAAS010000188 DATAAS010000000
VERSION     DATAAS010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6340
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_195540"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..847
                     /locus_tag="VHF08_03015"
     CDS             <1..847
                     /locus_tag="VHF08_03015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067649.1"
                     /translation="PTAENTKEELTSVIKPETTGINGEIMVITPPLIKSSKIVVVRPS
                     SQEKKEGEYDSISDKAKETSKSLKQTVSAVSEKAKLSNNNVEKDRKKNKIEQTYNQLD
                     REDIGEQNTAAIPVNEERFSISKNTVSEDVKIEKRWISATRKVEIPVPYEEVYVNDKV
                     VKLFDEKDDDNILSKLKDKILDSIDRDKNKQQTTTTTISQQQNEPRGELIPLFDDNDN
                     NQVTEKVIPILGEEIVVSRRTVKIGEIVIKKRRVTDNKKIQIDIKKEKVMLEYPDGTT
                     EQITA"
     gene            1078..1851
                     /locus_tag="VHF08_03020"
     CDS             1078..1851
                     /locus_tag="VHF08_03020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047294 - phosphoglycerol
                     geranylgeranyltransferase activity [Evidence IEA];
                     GO_process: GO:0006650 - glycerophospholipid metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="geranylgeranylglyceryl/heptaprenylglyceryl
                     phosphate synthase"
                     /protein_id="HEX2067650.1"
                     /translation="MIYNYKQSRNNLRQTVEDYIVNELGKHGTLCFPLIDSENFLNAS
                     SIAKKAELMGASGILVGGSSAVDQLELAEMVSSIKSGIQIPVILFPGNVTGISPKADA
                     ILFSSLLNSENPYFITEAQALGALAVKKYGIEPLPTGYLIIGEGTTAWFVGRARAIPF
                     NKSGIAIMYSLAAQYLGMRFLYLEAGSGAVQNVSPQMVSAVRKHYEGILIVGGGIRTP
                     ETAKEIADAGADAIVIGTMIEKEGNWEDRFSSIINAIRR"
     gene            1865..5443
                     /locus_tag="VHF08_03025"
     CDS             1865..5443
                     /locus_tag="VHF08_03025"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II large subunit"
                     /protein_id="HEX2067651.1"
                     /translation="MTIISDAEILLKEVNMPEYYLNYQHEILNNVQRNFELATKARRM
                     GLDVSDRVEPKIAYDLADRVAKMHNIDIADRLRALLSHTTKEKATLKIAEEIALGEYG
                     IGDLRTRLDNAVRVSLAVMTEGVTVAPLQGIADVQLKNNANGSQYLSVSFAGPIRSAG
                     GTEAALTMLIADHIRKVAGVDKYIANSYDDETGRFVEELRIYEREVGNFQFKILDEDV
                     VKCITNLPVELDGVDTDPVEVVGHRGMNRISTDRVRGGALRVMNDGLIGRSRKLLKLV
                     EILKLDGWNWLNDLKGAIQTGDDDAAHHRMSEVITGRPVLSMTKKIGGFRLRYGRCCN
                     TGFATIGIHPVVPILLNYAIVVGTQIKMDVPGKASTIALVDTIEPPLVRLDDGSVVQV
                     SSVDQAMKIRSRVDKILYLGDILISYGDFLENNAQLLSASYVEEIWALQLHSRLLTLS
                     SSSDFPMGEIKNERLIQLTKDPFTIFPTVEEAFEISKKFDIPLHPKYSFYWDSLNIDE
                     VLLLKEKFCIQKQQNTSIRNNNNSSNSNNNISSDTYLLSFDNDPKIKDILERLGVIHS
                     VKSGDNTIEINSQDQSYSLTRLLLSSQSAAVENMDITKGMSSSSSSYAANSIEKKDAS
                     EYISITSGVEVRPKFASSVAVRVGRPEKAAERKMKPPVHVLFPIGSKGGATRDILKAA
                     NNESFYTEISNRFCNSCRLPSLGIHCRNCSAPTPLRNLCILCKEQILDDADNSLCHRC
                     GKEGKTYSPVKYPLKTTVEAAEQKLGIKATEPFKGVKALMSRDKATEPLEKGILRQKY
                     SLYTFKDGTIRFDATNEPLTHFKPNWIQTSIEKLRELGYTRDYSGKDLTSSDQLIELL
                     MQDVIIPLDSAKHLLNVAKFVDEELVKLYGLEPFYNASSVEDLVGHLTVGLAPHTSVG
                     IMGRIIGFTNSQVCLASPVWHSAKRRDCDGDADSLMLLMDSFLNFSYNFLPDKIGGLM
                     DAPLLIQPIVLPYEVQRQAHNIDITSVYPLEFYEATWKQAKAGDLSDKIELVKNRIGN
                     ESQFFDYAFTHFTGLLTTNIQRSAYSRLNTMNEKLEMQIATAKLINAVDPDEVVSMVL
                     TTHILPDIMGNMRSYSSQGFRCSNCGEKYRRMPLIGRCIGCGNELLQTVTRGSVEKYV
                     GIATNMCDQFKISDYLRSRIETLTMELKLIFKEQKKEQSTLTEFMG"
     gene            complement(5472..6134)
                     /locus_tag="VHF08_03030"
     CDS             complement(5472..6134)
                     /locus_tag="VHF08_03030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067652.1"
                     /translation="MINNKLMVSILLLLALVIITFDPVSLIIDAESQTPPNTTSVTIE
                     DRIGMIMGNRITKMMDDTINMIKNVNTTVIVNQSENGITPVTNLTDVNKTEIRSTNEL
                     EKLAGNNIALTLDDISTDISNASMLEESEKSRTENATMNKQDTAVFEGQNISSAVNTT
                     ENTSHIDQKIINDNTGTNTTLYADNKTLATTTTDKPTSSNNIGNFFTQIGESVKKFFG
                     GN"
BASE COUNT         2179 a         1011 c         1238 g         1912 t
ORIGIN      
        1 acctacagct gagaatacaa aagaagaact aacatcagta atcaagccag aaaccacagg
       61 tatcaatggg gagattatgg taattactcc gccactgatc aaatcttcta agattgtggt
      121 agtgcgacca tcttctcaag aaaaaaagga aggagaatat gactcaatct cagataaggc
      181 caaagagact agtaaatcac taaaacagac agtttctgca gtaagtgaaa aagcaaaact
      241 tagcaataat aatgtagaaa aagacaggaa gaaaaataaa attgagcaaa cttataatca
      301 gctagatagg gaagatatcg gtgaacaaaa caccgctgct attcctgtta atgaagagcg
      361 gttttcaata tcaaagaata ccgttagtga agatgtaaaa atagaaaaaa gatggatcag
      421 cgctactaga aaagttgaga tacctgtacc atatgaagaa gtatatgtca atgataaagt
      481 ggtaaaatta tttgatgaga aagatgatga caatatacta tcaaaactaa aagataaaat
      541 cctagacagt attgataggg ataagaataa gcagcagacg acgacgacga caatatcaca
      601 acaacaaaat gaaccaagag gagaattgat tccattgttt gatgataacg acaataatca
      661 agtaactgaa aaggtaattc ctatcttggg ggaggagata gtggttagca gaaggacagt
      721 aaaaatagga gaaatagtaa ttaaaaagag aagagttact gacaataaga aaatccagat
      781 agacattaaa aaggaaaagg taatgttaga atatcctgat ggaactacag agcaaataac
      841 agcataaata gctgatcaag atagaaatag aagaagatca ccaattaaaa cacaattcat
      901 agataatatt cctaaaaatc aattaacttg cttatattca ttcaatcaag tactatattt
      961 tcattgacta acttttgttg tatgtgttct ttaatatttc tataaatatt cattatgtct
     1021 gaattattcg tcagtaattt ataggaccat attgtgatgt aacgtaaatc gatagcgatg
     1081 atatataact ataaacaatc cagaaataat ttgagacaaa ctgttgaaga ttatattgta
     1141 aacgaacttg gaaagcacgg cacattatgc tttcctctta tagactcaga aaacttttta
     1201 aatgcatctt ctatcgccaa aaaggctgaa ttaatgggcg cctctggcat cttggttggt
     1261 ggatcctcag cagtcgatca acttgaattg gcagagatgg tttcaagtat taaatcagga
     1321 atccaaattc cagtaatatt gtttcctggg aatgtcactg gaatatcgcc aaaagctgat
     1381 gctattctct tcagttccct acttaattcg gagaatcctt actttattac ggaagcacag
     1441 gcattgggag cccttgctgt aaaaaaatat ggaattgaac cattgccaac cggttacttg
     1501 attatcggtg agggtactac tgcatggttt gtcggacggg ctcgtgccat tccttttaat
     1561 aaatcaggaa tagctattat gtattcccta gctgctcaat atttgggcat gaggttttta
     1621 tatctcgagg ccggttctgg tgccgtacag aatgtctcac cccagatggt atcagcagta
     1681 agaaaacact atgaaggcat acttattgta ggtggtggaa tccgtacccc agaaacggca
     1741 aaggaaatag ctgatgccgg ggctgatgct attgtaattg ggacaatgat tgaaaaagag
     1801 ggaaattggg aagataggtt ctcctcaatt ataaacgcaa taaggagatg ataataacta
     1861 tatcatgaca attataagcg atgcagaaat ccttctaaag gaggttaata tgcctgagta
     1921 ttacctcaat tatcaacacg aaattttaaa caatgtacaa agaaactttg aattagctac
     1981 aaaagcacga aggatgggac tagatgtttc tgacagagtt gagccaaaga ttgcttatga
     2041 tctagcagac agagttgcaa aaatgcataa tatagatatt gccgacagat tacgtgcttt
     2101 actctcacat accactaaag agaaggcaac acttaaaatt gctgaggaga ttgctctagg
     2161 agaatatggt ataggtgacc tcagaactag actggataat gctgttcgtg ttagtctagc
     2221 tgtaatgaca gaaggtgtga cagttgcccc attgcaagga attgctgatg tgcagttaaa
     2281 aaataatgca aacggtagtc agtatctctc agtatctttt gccggtccta taagatctgc
     2341 gggagggact gaggctgctc ttactatgtt aatagcagat catataagaa aagttgctgg
     2401 tgtagataaa tacattgcaa attcatatga tgatgaaaca ggaagatttg tcgaagaatt
     2461 gagaatttat gaacgcgaag ttggcaattt tcagtttaaa atattggatg aagatgtagt
     2521 taaatgtata accaatttac cagtagagct tgatggtgtc gatactgatc cagtagaagt
     2581 agtaggacac agggggatga atagaatttc tactgatagg gtacgtggtg gtgctcttag
     2641 agtaatgaat gacggtctaa taggtcgaag cagaaaatta cttaaacttg ttgaaatact
     2701 taaactagat ggatggaatt ggctcaatga tcttaaagga gcaattcaga caggagatga
     2761 cgatgcagct catcatagaa tgtctgaagt gattactggt agacccgtac tttcgatgac
     2821 taagaaaatt ggtggcttta gattaagata cggtcgatgt tgcaatactg gttttgcaac
     2881 tattggaatt caccctgtcg tgcctatttt gttaaactac gctattgttg taggaacaca
     2941 aataaaaatg gatgtaccag gaaaggcatc aactatagca cttgtagata caattgagcc
     3001 tccactagtt agacttgatg atggcagtgt agtgcaagta tcaagtgtag atcaggctat
     3061 gaaaattcga tcaagagttg ataaaatact ttatcttggt gatattctaa taagttatgg
     3121 cgatttcctt gaaaataatg ctcaactgct ttctgccagt tatgttgaag aaatttgggc
     3181 tttacaattg cattcaagat tgctgacatt atcctcttct tctgacttcc caatgggaga
     3241 aataaaaaac gagaggctga ttcaactaac aaaggatcca tttacaatct ttccaacagt
     3301 tgaagaggca tttgaaatca gtaaaaaatt tgatattcct cttcatccaa aatattcatt
     3361 ttattgggat tctctcaata tagatgaggt tttattgtta aaggaaaaat tttgtataca
     3421 aaaacagcaa aatactagca taagaaataa taataatagt agtaatagta ataataatat
     3481 ctcttctgat acttatttac tttcattcga taacgatcca aagataaaag atatcctgga
     3541 acgactaggc gtaattcatt cagtcaaaag tggagataat actatcgaga ttaatagcca
     3601 agatcagtct tattctttga ctagattatt attatcttct caatcggcgg ctgtagagaa
     3661 tatggacatt accaaaggaa tgtcctcctc ctcatcatca tatgctgcta atagtattga
     3721 aaaaaaagat gcaagtgaat atatatccat aacatcagga gtagaagtta ggccaaaatt
     3781 tgcttcatca gtagcagtaa gggtaggacg tcctgaaaaa gctgcggagc gtaaaatgaa
     3841 acctccagtt catgtactat ttcctatagg gtccaaaggt ggtgcaacac gtgatatttt
     3901 gaaagcagca aataatgaat ctttttatac tgaaatttca aatagatttt gtaatagttg
     3961 cagacttcct tcacttggaa tacactgccg taattgtagt gcacctactc ctcttcgcaa
     4021 tctgtgtatt ctttgcaaag agcagatttt agatgatgct gacaacagct tgtgtcatcg
     4081 ctgtggtaaa gagggcaaaa cttactctcc agttaaatat ccgttgaaaa caacagttga
     4141 agcagcggag caaaaacttg gcatcaaagc aactgagcca tttaagggtg tcaaggctct
     4201 tatgagcaga gacaaagcaa ctgagccatt agagaaaggg atattacgac aaaagtacag
     4261 cctctatact tttaaagatg ggactattag gtttgacgct actaatgagc ctttgaccca
     4321 cttcaaacca aactggatac agactagtat agaaaaatta agggaattag gttatactag
     4381 agattatagt ggcaaggatc ttacgtcctc tgatcagtta atcgaactat taatgcaaga
     4441 cgtaataata cctttggatt ctgctaaaca tttgctcaat gtagcaaaat ttgttgatga
     4501 agaacttgta aaattatacg gacttgaacc tttttacaat gcttcctctg tagaagatct
     4561 tgtaggacat ttgacagtag gactagcacc acatacttct gtaggcatta tgggaaggat
     4621 aatcggcttt acaaattccc aagtctgttt ggcgtctcct gtttggcatt ctgcaaaacg
     4681 cagagattgc gatggtgatg cagattcatt aatgttacta atggattctt tccttaactt
     4741 ttcgtacaat tttttaccag ataaaattgg tggacttatg gatgcaccat tactgattca
     4801 accaatagta ttgccatatg aagttcaaag acaggctcat aatatcgaca tcacttcggt
     4861 ttatccactc gagttttatg aagcgacatg gaaacaggcc aaagcaggag acttgtctga
     4921 caagatagaa ttagtcaaaa ataggattgg aaatgaaagc caatttttcg actatgcctt
     4981 tacacatttt acaggtttgt taacaaccaa tattcaacgc agtgcatact ctagactcaa
     5041 tactatgaat gaaaaattag agatgcagat cgctactgca aagttaatca atgctgtcga
     5101 tcctgacgaa gttgtatcaa tggtccttac aacacatatt ttacccgata ttatgggtaa
     5161 tatgcggtca tattcttccc agggttttag atgtagcaac tgtggagaaa agtatcgcag
     5221 aatgccttta ataggaagat gtattggatg tggaaacgaa ttgttacaaa cagtcacacg
     5281 aggatcggtt gaaaaatatg ttggcattgc aaccaatatg tgcgaccaat ttaaaatcag
     5341 tgattactta cgtagcagaa tcgaaacttt aacgatggaa ttgaaattaa tctttaagga
     5401 acaaaagaag gaacagtcta ctttgactga attcatgggt taatatttga aattctttcc
     5461 aatgaaattt atcaattacc accaaagaat ttcttgactg attcgcctat ttgagtaaag
     5521 aaatttccta tattgttgct acttgttggt ttatcggttg ttgttgtagc caaggtttta
     5581 ttgtctgcat ataatgttgt atttgttcct gtattatcat taataatctt ttgatcaata
     5641 tgtgatgtgt tttcagttgt attaactgca gaagaaatgt tctgcccctc aaagaccgct
     5701 gtatcttgtt tattcatggt ggcattttct gtccgagatt tttccgattc ttctaacatg
     5761 gaagcattgg aaatatctgt actaatatcg tctagagtta aagcaatatt gtttcctgct
     5821 aatttttcta attcgtttgt acttcttatt tcagttttat taacatctgt aaggtttgtt
     5881 actggagtga taccattttc agattgatta acgataaccg tggtattgac attctttatc
     5941 atatttattg tgtcatccat catcttagta attctgttac ccattatcat tccaattcta
     6001 tcttcaatag ttacactggt agtattagga ggagtttgac tttctgcatc tattattaaa
     6061 gagacagggt caaaagttat tatgaccaaa gctaataata ataatataga aaccatcagt
     6121 ttattattta tcatgttgtg gtgtttttct ttcatatttt attaagcaat gttgttcatt
     6181 tgttcatcct aaggtgttaa cgactgcaaa ctatacagtt gggaagaata taatcgcttt
     6241 tagaatgctg ttatttaaaa aaataacttt gataaatctt tctaaccact atcaataaga
     6301 tgaagaaaaa aaataatata gtcacagtcg ccataactgc
//
LOCUS       DATAAS010000189         6127 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3435861, whole genome shotgun sequence.
ACCESSION   DATAAS010000189 DATAAS010000000
VERSION     DATAAS010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6127)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6127)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6127
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3435861"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1129
                     /locus_tag="VHF08_03035"
     CDS             <1..1129
                     /locus_tag="VHF08_03035"
                     /inference="COORDINATES: protein motif:HMM:NF015882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HEX2067653.1"
                     /translation="ITLDNTDEEKSNLGLIYTPGVAYIATEISKNKELVYDYTSRWNN
                     VAIICDGTRVLGLGNIGPESALPVMEGKSVLFKVLGGINAFPLCISTRDKEEIISFVK
                     AIQPVFGAVNIEDIESPKVLEIIERLRNEVSIPVFHDDQHGTAVITFSALINALRLLD
                     KKLMEIKIVISGAGSAGYGIYRILYEAGCRDIIVTDSKGAIYEGRSESLDNSYKQEIA
                     KKTNSKKLRGTLTDVIREADVFIGVSGKADLLNDEMVKSMNSNAVVFALSNPDPEMLP
                     PNALNAGAKIVATGRSDFPNQVNNALVFPSILRALLDLRVKAIQEDMLVAVAKAIAAL
                     VTDAHLKEDYIIPKINDPRILPIVNQTLKEALQRQACVSRH"
     gene            complement(1578..1979)
                     /locus_tag="VHF08_03040"
     CDS             complement(1578..1979)
                     /locus_tag="VHF08_03040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067654.1"
                     /translation="MQNSNDEPNVKSLKLRGRRALDIEHRNKVKEDEVRINVKISNIY
                     NVDLEEAKDIHINYHSDRILFFLLGRAKKSGMTDSMFVDRVKNLDIYEHASMVAQGEL
                     IEMAAVDVLYKELCDAERRGSREDRYINFYG"
     gene            complement(2693..4144)
                     /locus_tag="VHF08_03045"
     CDS             complement(2693..4144)
                     /locus_tag="VHF08_03045"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2067655.1"
                     /translation="MTLQQHKTKVRELDKKRWMVRFFILIAVAVVLVVKIFLLLTVMD
                     RLLGIYSFLTTFILFNILTLAWLRYRDPYHKAKDADLSNVKPPLISIVVPVKNEEDNI
                     RNCVMSCVNQSYKNKEIIIVDDASTDNTPKILDQIRAEVGPENIRILHLSKSVGKKRA
                     IETASEIAKGEIYAFMDSDCDMASDAVEKAAKIFMSDKLIGALTAQGKVRGAHTGNIL
                     LKMQQVYIDGSYRVIKGAESSFNSLTCCSGSLSFYKRAAVQDFMHEWAHDRFLGVDFK
                     FCTDRRMTARVLGSKVVLNENDLAKKEESHQIIPILQTGNDDLEMMKSSSDADMDEKD
                     TSKPYWKVLFSSSIRVNIGVPDTVSALVKQQIRWKKSFIRSLSSTGRIYWKRPFYAAM
                     MYYVQTGMKFIRPFILLHAVVMLPLAGDILSPLLWLSGIMFTGMIYGVDFRLRNPGDK
                     LWLYRPLFTFLTTFVYTWLLIWAGITIRKQSWR"
     gene            5367..5651
                     /locus_tag="VHF08_03050"
     CDS             5367..5651
                     /locus_tag="VHF08_03050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SemiSWEET family transporter"
                     /protein_id="HEX2067656.1"
                     /translation="MLENYVALADTIGIVAGVLVLSSFIPQLLKAYKTKRMIDVSIYL
                     MGLIATGMFLWIIYGIIRGDLVIIGTNVSGFILNIILIGLKIRYDKKHKH"
     gene            complement(5936..>6127)
                     /locus_tag="VHF08_03055"
     CDS             complement(5936..>6127)
                     /locus_tag="VHF08_03055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067657.1"
                     /translation="PNLPNNIRIYFKFNELTNTGATGAPMKATIQKGQSALNALEDIL
                     LSFIDKMEKYEWKYGLSLQ"
BASE COUNT         1975 a         1039 c          954 g         2159 t
ORIGIN      
        1 aattactttg gataatacgg atgaagaaaa aagtaacctt ggtttaattt acactccagg
       61 agttgcttac atagctacag aaataagtaa aaataaagag cttgtttatg attatacttc
      121 aagatggaac aatgtggcca ttatatgcga tggaactaga gtacttggcc tgggtaacat
      181 tggaccagaa agtgcattac cagttatgga aggaaaatct gttttattca aggtattagg
      241 cggcattaac gcctttcctc tttgtatatc aactagagac aaagaagaaa taatcagttt
      301 tgttaaagct attcaaccag ttttcggagc cgtaaatata gaagacatcg aatcgccaaa
      361 ggtattggag atcatagagc gacttagaaa tgaagtttca atacctgttt ttcacgatga
      421 tcaacacgga acagcagtaa tcactttttc agcgttgata aatgccttga gattattaga
      481 caaaaagtta atggaaataa agatagtaat ttctggagca ggttcagctg gttatgggat
      541 atataggatt ctatatgagg caggctgtag agatataatt gtgacggata gcaaaggagc
      601 tatttacgag ggaagaagtg aaagtttgga taattcatac aaacaagaaa ttgcaaaaaa
      661 aactaattcc aaaaaattgc gtgggacact taccgatgta attagagaag ctgacgtatt
      721 cataggcgta tctggaaagg cagatttatt aaatgatgaa atggtgaaat caatgaattc
      781 taatgctgta gtatttgcat taagtaaccc cgatcccgaa atgcttccac ctaatgcact
      841 gaacgccgga gccaagattg tcgctacagg cagatcagat tttcctaatc aggttaacaa
      901 tgctttagta ttcccttcta ttcttagagc tttgttggat ctaagagtca aagctataca
      961 ggaagatatg ctcgtagcag ttgcaaaagc aattgcagca ctagtcacgg atgctcatct
     1021 aaaagaagat tacataatac ctaaaataaa tgatccacga atacttccca tagttaatca
     1081 aacattgaag gaagcacttc aaagacaggc atgtgttagt agacattaac ggcctcgtaa
     1141 atctttaatc aaagataaat taggatatga cgataatttt gttacttctg tctatttcaa
     1201 tataaactag aggtatgtca tgttcaaaca aaaaagagaa tagcatagga aagaaattga
     1261 aattggtatg tgtatcaaat aaatattaaa ctgatattaa actgagtgac cattcacact
     1321 ctcattatca taccgtagac agatgctgtt aatgtatctg ccatatttgg agacttcatc
     1381 agttacttat tgatgattaa agataattat gtttttctaa tacatagaac cagcgcctgt
     1441 gcctccgtaa gtttgtgtat atgacctttg cacatcttac tacattatac aatctgaaga
     1501 cactcttttc ttatggtgac aagtcagaag tatatttaat cgctatgcac gttttgcacc
     1561 gagtggataa aaaggggtca gccgtagaag ttaatatatc tgtcttctct acttcctctc
     1621 ctttctgcat cacataattc tttgtacagt acatctactg cagccatttc tattaattct
     1681 ccctgtgcaa ccatggaggc atgttcatag atatccaaat ttttcaccct atcaacaaac
     1741 atagaatctg tcataccact cttttttgct cttcccagga ggaagaatag tattctatct
     1801 gaatggtaat ttatatgaat atcctttgct tcttccaagt ctacgttata tatatttgat
     1861 attttaacat ttattcttac ttcgtcttct ttaaccttgt tgcggtgctc gatatctaga
     1921 gctcttctgc ctctcagttt taaagattta acattaggtt catcatttga attttgcatt
     1981 tatttctaaa atcaaaacaa tttattcatt ttgtccttat taagttatct ttttataatt
     2041 attggttaat tattactaat gctacaacct ttatgcttgc cctttattga agatagtttt
     2101 aatatagtaa ttataatagc aaatatagcg gagatagata aagagatatt ctttaatacg
     2161 gacataatac cgcttactga atatgcgtat ttgcatataa tatcaggtat gactcccgtt
     2221 gtaatcaggt aatattatca attcatttcc aattgaaaga aacgaatgat caggatcgtt
     2281 gatctcctta tcagaacctc aaactgtgca tatcatcatc cctagttgtt tttgttttat
     2341 ctccttgtga taagacaact attacagaga aaaatcctat ccaaagcttt ccatttacaa
     2401 tatttaatca cggttatcga gattggtact taatcaacaa tagtacttag agcaaaatat
     2461 atgaaggata gaatcacata tttctttaaa caggtgtttt gtttgtattg gagcgtttta
     2521 ttgactacat agaaatcaat ctattctcaa gcatacttct atgctcctgt gtgttattta
     2581 tttttctttt atgagtttgg tttgtttttc ataaatattt gctatgacgc tcttgatata
     2641 cactttctat tatgttgtat gctcagacaa gctgtattaa cataatgcgc gtttatctcc
     2701 atgattgttt tctaattgta attccagccc aaataagcaa ccaagtatat acaaatgttg
     2761 taaggaatgt aaatagtgga cgatataacc acaatttatc accaggatta cgtaatctaa
     2821 agtctactcc ataaatcatt cctgtaaaca ttattcctga caaccaaagt agaggtgata
     2881 aaatatcacc tgcaagtggc agcatgacca ctgcgtgcag cagaataaat ggacggataa
     2941 atttcatacc agtttgtaca taatacatca tagccgcata aaatggacgt ttccaatata
     3001 ttctgcctgt tgaagatagg cttctgatga aacttttttt ccatcttatc tgttgtttta
     3061 caagtgctga aacggtatca ggtactccta tgtttactct aatacttgaa ctaaacaaca
     3121 ctttccaata tggtttggaa gtatcctttt catccatatc tgcatctgaa gatgatttca
     3181 tcatctctag gtcatcattt ccggtttgta gtattggaat aatttgatga gactcctctt
     3241 tcttagctaa atcattttca tttaaaacaa ccttcgatcc aagcacacgt gcagtcatac
     3301 gtctgtcagt acagaattta aagtctacac ctaaaaagcg gtcgtgagcc cactcatgca
     3361 taaaatcctg tacagctgct cttttataga aactcagaga tcctgaacag caagtaagtg
     3421 aattaaatga gctttcggct ccctttatta ctctatacga tccatcaatg tatacttgtt
     3481 gcatttttag taatatatta cctgtatgcg cacctcggac ctttccctgc gccgtcaagg
     3541 ctccaattag cttatctgac ataaagatct ttgctgcttt ttcaacggca tcacttgcca
     3601 tatcacagtc gctatccata aaagcgtaaa tttctccttt agctatttca cttgctgttt
     3661 caattgccct ttttttaccg acacttttag ataagtgaag gatacgaatg ttctccggtc
     3721 ccacttctgc tcggatttga tctagaattt taggtgtatt gtcggtacta gcatcgtcta
     3781 ctattatgat ttccttattt ttgtatgatt gattaacgca agacataacg cagtttctga
     3841 tgttatcttc ttcatttttt acaggtacta caattgaaat aaggggcggt ttaacatttg
     3901 aaaggtcagc atcttttgct ttatgataag gatctctgta tcttagccaa gctaatgtta
     3961 atatattaaa caagataaaa gttgtgagaa agctgtagat ccccaataat ctatccatta
     4021 cggttaacaa taagaaaatt ttaacaacca aaacaacagc aacggcaatg agtataaaga
     4081 accttaccat ccatcgcttc ttgtctaatt ctctaacctt tgtcttatgc tgttggagag
     4141 tcaagtccta aacctcggaa tatattgctt tatagctaaa taactaccta actgaacaat
     4201 taaattaaaa tgtttgatat ggctaggatt tacaacatat cttaaacctg agtacaacaa
     4261 ttctatagtc atggatattc acagttatga tatatagtca atattcaaat ataactctaa
     4321 tttattactg tagacatctt attataaaag aaagtattta tgtttattat atatcaatat
     4381 actatatcaa tagattttat tattcttcta taatgcacta ctatttcctc atgtcatatg
     4441 cttaaaattc aaatattatt tgagtttccg tttctgttat tgataacact ctggctggct
     4501 atactcgttg gtaaatatat ccatagtacc ctattttata actctcaaaa aagagtgagt
     4561 gaaaatgtcc atgaaaattt gatgaaaatt tgataaaaaa gttgtattat gagcaacact
     4621 aaatactact agaatttata attttgtttt tttatgatct ttttctcttt tgggtatgct
     4681 aactatgaac cttgttatat atatttgtca ttcaattatg ttctactcgt ttgctatata
     4741 tcttttctct ctgctagagt tctctttctt ctaaatgagg aacgtaaata atggcgtata
     4801 catttagtat tacaatatag ggatagtata taccgtcaca catctagtta ggtgctctat
     4861 gtccgcaaac atactcttct aaacaaagtt taaacaaact tctctatgca taatatgttt
     4921 ttgattctaa ttactgcata ggttaattac tgcatatgtg aatatagaaa tattaattat
     4981 tactattgta gtcttttctt gaaggtattc acaacttcaa gattcataat tgtatattat
     5041 attattattt catatttttg ttagcatatt tcattctcat caatgacaat atcgataaca
     5101 aaatctaaca aactcttctt cttgtctttg aaataagaac ttcttatagt tatttggctt
     5161 tatattgttg aataattcca tgctgaaaaa cattattcta ttttcttgat atccattgaa
     5221 ccgagagaaa ggtatctttt tttagaggat atttttccaa tatcaatgat ttaaaaaagt
     5281 caaaataatt atgatgtagc cgtttcgcga gcaataacag acagagtcta attgctttat
     5341 atcaaagaaa attgggcttt taatttatgt tagaaaatta tgttgcctta gctgacacca
     5401 taggtattgt tgcaggagta ttggtattat catcattcat tccacaactg ctcaaggcat
     5461 ataagacaaa gaggatgatc gatgtctcaa tttatcttat gggattgata gcaactggaa
     5521 tgtttttgtg gataatatat ggtattataa gaggcgacct cgtaattatc ggtacaaacg
     5581 taagtggatt cattctgaac attattctaa taggactaaa aataagatat gataaaaaac
     5641 acaagcattg aatcaacatc atattgatct cgaacatata tggttgctag tacagatttt
     5701 cgttagcaat tatatttatt tttaaaattt atttatttta tacttgtatt tattatacta
     5761 tcatatctgt cagtcgttta tgatcctcta tataagcgca tagaaaagtc tttttcatca
     5821 tatgcataac tcaattccca ttaccactca ttgtttagat taaaaggatt gtgttattat
     5881 cacctattat ctcatacact tctaacagtc tttttcactt tagagatcgt ttatttcact
     5941 gtaaagataa tccgtatttc cattcatact tttccatttt atctataaat gaaagcaaaa
     6001 tatcttcaag agcatttaaa gcactctgtc ctttctgaat agttgccttc atgggagcac
     6061 cagttgctcc cgtatttgtt agctcattaa atttaaagta aattcttata ttgttgggca
     6121 aatttgg
//
LOCUS       DATAAS010000190         1953 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1827717, whole genome shotgun sequence.
ACCESSION   DATAAS010000190 DATAAS010000000
VERSION     DATAAS010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1953)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1953)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1953
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1827717"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            18..323
                     /locus_tag="VHF08_03060"
     CDS             18..323
                     /locus_tag="VHF08_03060"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX2067658.1"
                     /translation="MPLNTTGWSNRGWLEIIEFILSMCENGARKTHVMYRCNLNSKQI
                     NEYLNFLLECGMLEKIQERLDSKRSIYRTSDLGRDFIIKYKQLAELFSKTPPPSLKQ"
     gene            complement(488..889)
                     /locus_tag="VHF08_03065"
     CDS             complement(488..889)
                     /locus_tag="VHF08_03065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067659.1"
                     /translation="MQKDYLESFCREILANNQSIRFVGIANHLGSLIATVYRRGLVPL
                     MTKEETSQYSIQAVLRAATREDFESKIGRLEYSIGKYEKLIRATVPIIFGNSETKRYY
                     LLLSFDSDSDATSIINKNVLLHIAKNKDHFI"
     gene            complement(1083..>1953)
                     /locus_tag="VHF08_03070"
     CDS             complement(1083..>1953)
                     /locus_tag="VHF08_03070"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEX2067660.1"
                     /translation="RELLTDDGSLWIIIGDTRRKYGKLMIPHRLALKLVEKGYTFRED
                     IVWYKKNNISTSSKENLSQAYEIILFLSKKDKCFTNMDGIRVGGNEVREGRNKTPPSY
                     LLQYTPLRQDKEKISKIIEVIHNAKPTTPFEELPTTSEISWAFGYDAEKYCPTCFRKF
                     KRHATRKRIGDHKHYPIFAVCNSNGKNPGNVWEVSTKAHYGNEHFAIFPEDLVAKIIK
                     FTTIKGDWVLDPFAGRGTTGIACVSLGRNFTGIDLYNENTVRIEKNITDLIKGNFTVS
                     INDLTKDNIYAKV"
BASE COUNT          611 a          323 c          302 g          717 t
ORIGIN      
        1 gatactttcg gttataattg ccacttaata caactggttg gagtaataga ggatggttag
       61 agataatcga atttattctt tcgatgtgtg agaatggtgc aaggaagacc cacgttatgt
      121 accgatgcaa tttgaattct aaacaaataa atgaatatct gaactttctt cttgaatgcg
      181 gaatgctaga aaagattcag gaacgactag attcaaaacg ttctatttat aggacaagcg
      241 atctaggaag agattttata attaaatata aacaacttgc agaattgttt agtaagactc
      301 caccgccatc cctaaagcaa taatttatta taaattatgt tatttgatta tagagacact
      361 atactcattg attgtaatta tttattcaaa tgcgatattt tagtgtattt ttggaattaa
      421 acaaaatcca tttatcagat gatagatata tacgatactt attagaatgt gaattataga
      481 agaagaatta tataaaatgg tctttatttt ttgcaatgtg caatagcaca ttcttattaa
      541 taattgatgt ggcatctgaa tccgaatcga atgataaaag taaatagtat cttttagttt
      601 cactattacc aaatattata ggaacagttg cacgaattaa tttttcatat ttgcctatag
      661 aatattcaag cctccctatc tttgattcaa aatcttcgcg tgtagcagca cgaagcacag
      721 cttgtattga atattgcgaa gtttcttctt ttgtcattaa aggaactaaa cctctcctat
      781 acactgttgc gataagacta ccaagatgat ttgctatacc tacaaatctg attgattgat
      841 tatttgctag tatttctcta cagaagcttt ccaaataatc cttttgcatt gtttagatct
      901 tcatcataaa tatttataga ttagcatatg atagaagtaa aattagatat taatccagag
      961 atattataat tatattattc tctattaaaa gatattttat tctttaaact ataacatgtt
     1021 aatatcttca attttttgcc tcatacatta ttgccatttc ttgggcatat aatctaataa
     1081 agttatactt ttgcatatat gttatcttta gttaaatcgt ttatactaac tgtaaagttg
     1141 ccctttatca gatcagtaat atttttttct attctaacag tattttcatt gtataaatcg
     1201 attcctgtga agttccttcc aagggatacg caagctatac ctgtcgtccc tcttcctgca
     1261 aaaggatcta gaacccagtc tcctttaata gtagtaaatt taatgatctt ggcgactaaa
     1321 tcttcaggaa atattgcaaa atgctcattt ccataatgtg ctttagtgga aacttcccaa
     1381 acatttccag ggtttttacc atttgaatta caaactgcaa atattggata atgtttgtga
     1441 tctcctattc tttttcgcgt ggcatgacgt ttgaattttc taaaacatgt aggacaatac
     1501 ttttctgcgt catagccaaa ggcccaagat atttcgcttg ttgtagggag ttcctcaaaa
     1561 ggagtagtag gctttgcatt atgaataacc tctatgatct tggatatctt ttctttgtct
     1621 tgccttaaag gtgtatattg taataggtag gagggcggag ttttgtttcg cccttctctt
     1681 acctcgttcc ctcctaccct aataccatcc atattcgtaa aacatttgtc cttctttgac
     1741 agaaagagga taatttcata tgcctgcgaa aggttttctt ttgaactagt agaaatatta
     1801 tttttcttat accagacgat atcctctcta aaagtataac ctttttcaac caactttaag
     1861 gcaagtctat ggggtatcat gagttttcca tactttcgcc ttgtatcgcc tattatgatc
     1921 caaaggctgc catcgtcggt taatagttct cta
//
LOCUS       DATAAS010000191         2919 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4524800, whole genome shotgun sequence.
ACCESSION   DATAAS010000191 DATAAS010000000
VERSION     DATAAS010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2919)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2919)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2919
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4524800"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(280..942)
                     /gene="bcp"
                     /locus_tag="VHF08_03075"
     CDS             complement(280..942)
                     /gene="bcp"
                     /locus_tag="VHF08_03075"
                     /EC_number="1.11.1.24"
                     /inference="COORDINATES: protein motif:HMM:NF006960.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016209 - antioxidant activity [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-dependent thiol peroxidase"
                     /protein_id="HEX2067661.1"
                     /translation="MDIINEEVFVESIILIIENKSFTAFLSSWTTSHLISKFFYQYRY
                     VLSMNKKDIEQQQQQLLAEGDIAPDFISSDSNGHSFKLSDFRGKKKVVIYFYPKDFTP
                     GCTTEAIEFTKDYNKIRDSNIEIIGVSPDSEESHEKFRQKLKIPYLLSADPQNEISKK
                     YGVYGPKSFMGKEYIGVNRSTFLVDINGKIIRIFPKVKPAGHSQEVIDSFMRGENTNP
                     KK"
     gene            complement(942..1943)
                     /locus_tag="VHF08_03080"
     CDS             complement(942..1943)
                     /locus_tag="VHF08_03080"
                     /inference="COORDINATES: protein motif:HMM:NF037020.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="redoxin family protein"
                     /protein_id="HEX2067662.1"
                     /translation="MDIIPAVPAPEFRDISIWANSESLSIKSLKGKVILLDCWTYTCI
                     FCLRTIPIMKRLQQKYANNGFQVIQAHSSEYNFAKDTRNIQRALMRYNINNIPVAFDI
                     NNRIWEAYGNMYWPKHILIDHNGFVRYEHAGYGGIQDFESAIIELLEEAGQKLPEDRD
                     SENPTDEIFNTYGMHYYGIAPEICVGYSRLRRFGNNQTMKRDEQNYVVDSGAHDYNLV
                     YLRGKWIWEREGVRFSSNGKEKDPAIIIKYDSAKRVHGIIGSSDSKVGRIEVKLDGNY
                     LTEKHAGKDMTIKNGVSFVEVEWPFMHNLVTTEKPEIHEIEIIPRSNNFIFYTFVFG"
     gene            2250..>2919
                     /locus_tag="VHF08_03085"
     CDS             2250..>2919
                     /locus_tag="VHF08_03085"
                     /inference="COORDINATES: protein motif:HMM:NF040244.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase modulator"
                     /protein_id="HEX2067663.1"
                     /translation="MTSLLVIDDLLSLISKAKDTKYVEVRYQSRTTNEVNFSNGELER
                     IRSIENSGCGIRVLVDGCWGFSSTHLLSKNALKDSLDEAISVAKLLAGTKKNRVEGLA
                     TSKLAKGLYKTKIKGDLSSIDIENKVRITKEAEEQARKYSPVIKFASCVYREMLDHKL
                     IVNSDGAEVEIFDSKPEFNVTTVARKGNESVTTSEGIGITGGWQDLFSEKDHLYYANL
                     ASEKA"
BASE COUNT          947 a          523 c          479 g          970 t
ORIGIN      
        1 accacaatat tgcagaccta aattctccaa agattttgtt aacaaaattc tcaaacttta
       61 gtcattcttc aaattatttt ataaatatta gaaaatacag tgagttctct ccagtatttt
      121 tggacaagaa attgatcaca tatttagcaa gatgcatcgc aataatatag aacaacgaat
      181 gaagctctgt atatatttat tattaagata tttcaccaaa caatagatat ccattagcat
      241 aacaattatt ttatataatt attagaatag caaataagat cacttctttg gatttgtatt
      301 ttctcctctc atgaaggaat caattacttc ctgactatga cctgctggct ttactttagg
      361 aaaaattcta ataattttgc catttatgtc gactagaaaa gtagatctgt taacaccaat
      421 atactcctta cccatgaaac ttttaggccc ataaacaccg tatttcttgg aaatttcatt
      481 ttgagggtcc gcagaaagaa gatagggaat tttcagcttt tgtctaaact tttcatgtga
      541 ttcctcgctg tccgggctaa cacctataat ctctatatta gagtctctta tcttgttata
      601 atcttttgtg aattctattg cctcagtcgt gcagcctggt gtgaaatctt ttggataaaa
      661 gtaaattacg accttttttt tcccacggaa gtcagacaac ttgaaactat gaccattgga
      721 atctgacgaa ataaaatctg gagctatgtc cccctctgcg agcagctgct gctgctgctg
      781 ctcaatatct tttttattca tacttaacac atatctgtat tgatagaaaa actttgagat
      841 gagatgagat gttgtccacg atgatagaaa tgcagtaaaa gatttatttt caattattag
      901 tattattgat tctacaaaaa cctcttcatt aataatatcc attatccaaa tacaaatgtg
      961 taaaatataa aattgttgga gcgaggaatt atctctattt catgtatttc aggtttttct
     1021 gtggtaacta aattatgcat gaatggccat tccacctcta caaaactgac gccatttttt
     1081 attgtcatgt cttttcctgc atgtttctct gtcaaatagt taccgtctag tttaacttca
     1141 atccttccaa ccttgctgtc tgaggatccg ataataccat gtacgcgttt tgcactgtca
     1201 tattttatta ttattgctgg atctttctct ttgccattag aagaaaaccg tacaccttca
     1261 cgttcccata tccacttacc gcgcagataa actaaattat agtcatgagc tccgctatct
     1321 actacataat tttgttcatc acgcttcatg gtttggttgt taccaaatct tctaagcctc
     1381 gaataaccaa cgcagatctc cggagcgatc ccataataat gcatgccata agtattaaaa
     1441 atctcatcag tcggattttc actgtctctg tcttcaggta gtttctgacc agcctcttct
     1501 aacaattcta ttatcgcact ttcgaaatcc tgtatcccac catatcctgc atgctcataa
     1561 cgtacaaagc cattatgatc aattaaaatg tgttttggcc aatacatatt accatatgct
     1621 tcccatattc tgttattgat atcgaatgca actggaatat tgtttatgtt atagcgcatt
     1681 agtgctcttt gtatgttcct tgtatcttta gcaaaattat attctgagga atgagcttgg
     1741 attacttgaa acccattatt ggcgtatttt tgctgtaaac gcttcattat aggaatggta
     1801 cgtaaacaaa agatgcatgt ataggtccaa cagtctagga gaatgacctt tcccttcaga
     1861 ctcttgattg aaagcgactc cgaatttgcc caaatggaaa tatctctaaa ttcaggcgct
     1921 ggtacggcag ggataatatc cattttataa cgacctccta tgaagagcag tatttaaaga
     1981 caaataatag aagcaaagaa tgaagataat ctgagaatat ctttctccga atggaactat
     2041 aagagtaatt gcttcaaata tcatttctca ctatttgtct tatatgcaaa gataatcctt
     2101 atttattgat tcttaataat cgaatagact atgagagtat agtttctctc aacaacataa
     2161 cgatgtatgt aaggcaatag agtatactct aattgttgtc gtatagataa acataattga
     2221 gagtagttaa tcatttgata ttattcatta tgacaagttt gctggtaata gacgacttgc
     2281 tttctctcat ttcaaaagct aaggatacaa aatatgttga ggttcgttat caatctagaa
     2341 ctacaaatga agtaaatttc agcaatggtg aacttgaaag aattcgtagc attgaaaatt
     2401 ctggctgtgg tatccgagtc cttgtagatg gttgctgggg ttttagcagt acacatcttc
     2461 tttcaaagaa tgcattgaaa gactcacttg atgaagcaat atcagtagca aagctactag
     2521 ccggaacaaa aaagaataga gttgaaggac ttgcaacatc aaagctcgct aaaggtcttt
     2581 ataaaacaaa gattaaaggc gatctttcca gtattgatat tgaaaataaa gtaagaatta
     2641 caaaggaggc tgaagaacag gctcgaaagt attctccagt aataaaattt gcttcttgtg
     2701 tttatcgtga aatgttagac cataaattaa tagttaatag tgatggggct gaagtagaaa
     2761 tatttgactc taagccagaa tttaacgtaa caacagtcgc acgcaaagga aatgaaagcg
     2821 taactacctc agaaggaatt ggaataacag gtggctggca agatttgttt tctgaaaaag
     2881 atcatcttta ctatgctaat ctagcatcag aaaaggcaa
//
LOCUS       DATAAS010000192         2310 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1831433, whole genome shotgun sequence.
ACCESSION   DATAAS010000192 DATAAS010000000
VERSION     DATAAS010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2310)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2310)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2310
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1831433"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            139..435
                     /locus_tag="VHF08_03090"
     CDS             139..435
                     /locus_tag="VHF08_03090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="V-type ATP synthase subunit F"
                     /protein_id="HEX2067664.1"
                     /translation="MRIVAIGSRVFVTSFQLAGVQGIKADSSSDALALINKIGANNDI
                     GLILLSDDLGREIRSQLTDIRAKKPIPLIFELPSSGSTKQKVDYRALLKQILGV"
     gene            complement(721..1149)
                     /locus_tag="VHF08_03095"
     CDS             complement(721..1149)
                     /locus_tag="VHF08_03095"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HEX2067665.1"
                     /translation="MSTYYDILGIKKTATQAEIKRSFRKLALRYHPDKNKNSEESEKK
                     FMQIVEAYEVLSDEMSRKTYDNSSYYISYGSTHRREWVPSADFEHIYSYEQIKQKYGR
                     HNSSGGMWDISENASVGMWKATIILFGSLGIIAIFILLLG"
     gene            1289..2230
                     /locus_tag="VHF08_03100"
     CDS             1289..2230
                     /locus_tag="VHF08_03100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067666.1"
                     /translation="MNSIAAMELEIRYQVQDLPKLIRPNNINPDCCLFIGSGDSFVAG
                     LIAHYASRRRAITCNPVEFLLNPSIADKRQIYIISISGRTNANILSAKMARKHKIRTT
                     AITRKPESILAKYCDDIIKLSYKSTDVLTSGTIGFTSCMLTCLSLISDVKEINYIDKV
                     YFQAKIEADDLLEKHSMDTSSFIFLGDGLLFPVGIYGALKMNEIFGSRSYAYMIDEFC
                     HSPIFSIRRQDNIIIFDKGDYDKKKARVLCKRLDKISYSSLYIDLKKLTGIEAVLKSI
                     FLIQFLMLKIAKRNGLKECFFICNKELLKLSSDLIYK"
BASE COUNT          776 a          382 c          383 g          769 t
ORIGIN      
        1 tagactttta tagactgtaa ttccattgtc aataatcagt gaagcaacac ttttcagatt
       61 tatcttctat atgacaagca ttttgtgagg atcctcaaaa agattaaaag gatggcaaaa
      121 caaatcagct agagaacgat gcgcatagtt gcaataggaa gtcgagtatt tgttactagt
      181 tttcagcttg caggtgtaca aggaattaaa gccgattcct catcagatgc gctcgcttta
      241 attaataaaa ttggtgcgaa caacgatatt ggtctaatat tattaagtga tgatctagga
      301 agagaaataa gaagtcagct tacagacata cgagcaaaaa aacccattcc attgattttt
      361 gaactccctt catctggtag cacgaaacaa aaggtagact atagagcttt attaaaacag
      421 attctaggtg tttaaatttt ctttctttga tcacaattct ataaatactc tgaatctttt
      481 catactttga ctattcgaaa atagaaatga cgacttatca gaaacgtctc ataattttgc
      541 ttattatttc tttattggct ggatttattg ccactatact ttccgtcatt ttagattcat
      601 atttcttttt gctgatttct cttcccaact acagcttggc agcttttttt ggctataggt
      661 attatagata tgatcataat gctagattac atagaaaata gaacaaagat agaaagggca
      721 ctaaccaagc agcagtataa atattgcaat tattcccaac gaaccaaata gaatgattgt
      781 agctttccac attcctacac tcgcattttc actgatatcc cacattccgc cgctggagtt
      841 atgtcgaccg tatttttgct taatttgctc ataactatag atgtgctcaa aatcggcaga
      901 ggggacccat tctcttctgt gtgtacttcc atatgatatg tagtatgacg aattatcata
      961 agtttttctt gacatctcat cagagaggac ttcatatgcc tcaacaattt gcatgaattt
     1021 tttttctgat tcttcggaat ttttattttt atcaggatga taccttagcg ctaattttcg
     1081 gaaggatcgt tttatttctg cctgagtggc agtttttttt attcccaata tgtcatagta
     1141 tgttgacact tcttgtatta acataatatg atgtaaataa taatttttat atctatctta
     1201 aaaggcgaat atactctcat acgtattgta aaggagaaat caaattttat taaaatttta
     1261 ataaacacag aggcagaatt agaagcgaat gaattctatt gctgcaatgg aattagaaat
     1321 caggtatcaa gtacaagatc taccaaaatt gattcgacca aataatatta acccggattg
     1381 ttgtttattt attggctcag gagattcttt tgttgctggc ttgattgctc attatgcttc
     1441 tagaagaaga gcaataactt gtaacccggt agaatttctc ctaaatccga gcatcgccga
     1501 taaacgtcaa atctatatca tatccatttc cggaagaaca aatgcaaaca tattatctgc
     1561 aaaaatggct agaaagcaca aaataagaac aactgcaata acgagaaaac ctgaaagcat
     1621 ccttgcgaaa tattgcgatg atataatcaa gttaagctac aaatcgaccg acgtattgac
     1681 atcaggaact ataggtttta cttcttgcat gttgacctgt ctctctctaa tatcagatgt
     1741 aaaggaaatt aattatatag ataaagttta ttttcaagca aaaattgaag cggatgactt
     1801 gctagagaag cattccatgg atacctcatc ttttatattt cttggtgatg gcctgttatt
     1861 tcctgttgga atttatggtg cattaaagat gaatgaaatt tttggttcca gatcatatgc
     1921 atacatgatt gatgaattct gtcattcacc tatattcagt attagacggc aagacaatat
     1981 tataatattt gataaagggg actatgacaa aaagaaagcg cgagttttat gtaaaagact
     2041 tgataaaatc agttattcgt cactgtatat agatcttaaa aagcttactg ggatagaagc
     2101 agtattaaaa tctatcttct taatacaatt tcttatgctg aagatagcca aaagaaatgg
     2161 attaaaagaa tgctttttca tatgcaataa agaactcctc aagcttagct cagatttaat
     2221 ttacaagtag tcaacggaat gtctttgact aaattctgac tatgaaagcc tatacagaag
     2281 accttctact atatcataag caaaatggat
//
LOCUS       DATAAS010000193         3366 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_752543, whole genome shotgun sequence.
ACCESSION   DATAAS010000193 DATAAS010000000
VERSION     DATAAS010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3366)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3366)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3366
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_752543"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            443..925
                     /locus_tag="VHF08_03105"
     CDS             443..925
                     /locus_tag="VHF08_03105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEX2067667.1"
                     /translation="MGDKKSVSALVSGGEASAGPPLGPALGPMGVNVLQVVNMINDKT
                     KDFPGMKVPVKVEVDSESKKFTVEVGIPPTAALVSKEAGITKGSGAAGTNFAGNITMA
                     SAVKIAKMKIDSSYAKDLKSAVKEVIGSCVSSGVKVEEKPAKEVFSDISAGKYDELFK
                     "
     gene            1123..2784
                     /gene="thsB"
                     /locus_tag="VHF08_03110"
     CDS             1123..2784
                     /gene="thsB"
                     /locus_tag="VHF08_03110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0140662 - ATP-dependent protein folding
                     chaperone [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thermosome subunit beta"
                     /protein_id="HEX2067668.1"
                     /translation="MSIQQGSAGGMPILILKEGATQTKGRDAQKNNITAAKLISEIVR
                     SSLGPRGMDKMLVDSLGDVTITNDGATILKEIDVQHPAGKMMVEISKATDNEVGDGTT
                     SVVILAGALIEKAEELIGKDVHPTIIVDGYRKSAVRAIEILNTLAQKIDGGDKDQLTR
                     IAKTSMQTKLVSKDADELAQIVVNASMQICEQFDSGYKVDIDDIKVDKKAGGSLRDTK
                     LIKGIVLDKEVVHGGMPKRIEKAKIVLINSALEIEKTEFDAKININSPDQMNMFLEEE
                     NRMLKGMVDKITASGANVVICQKGIDDIAQHYLAKANVLTVRRVKESDMTKLARATGA
                     RVINNLEDLTPKDLGSADLVEERKIETDKWVFIEGAKHPKAVTILIRGGSQRVVDEAE
                     RSLHDAIMVTKDVLEKPAIVAGGGSPESYTAGKLREWTSTLSGREQLAAEKFAEALEV
                     IPLTLAENAGMDPIDTMTDLRAKQSKGSKSAGIDARNARITDMSKLDIVEPLSVKEQV
                     IKSATEVASMILRIDDVIASSKSAGGPPGGGMPPGGMPPGGMGEM"
     gene            complement(2792..3028)
                     /locus_tag="VHF08_03115"
     CDS             complement(2792..3028)
                     /locus_tag="VHF08_03115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067669.1"
                     /translation="MNRKCSACSRKASTDKYCDYHAQSFESLKEHYNQWVKAYGTISW
                     SDYLTKLVKMNETGIWVKEVISAELKNCDKRKRN"
BASE COUNT         1156 a          531 c          679 g         1000 t
ORIGIN      
        1 aaaaatactc tctcatccaa tgttagaaag aagtttattt ctctttgtag ttttcttaga
       61 aagcccaatt tctttacatt attgatttag tatttaattt tacaacctaa aaaaaattaa
      121 tttgtagatg aaggacttgt cactgaaagt aatagatttc acattttgca tctctaaacc
      181 ttatgaagct aaaaatatat tatctattac cattaaatgc agtcttatta tcttcaaaca
      241 gtatgtatta ttggcttaaa tttcttttaa taaatgactt gctgcctatt gaagttggtg
      301 tcgtcaagta aaaggacaat aagatcgttt ttttaataat cttgctattt tattattatt
      361 ataataataa tattatgctt cagtttttta tttaattttt aatgacggag tttatatgct
      421 ggattaagga ctagtcttat acatgggtga taaaaagtcc gtttcagctc tagttagtgg
      481 tggcgaagcc agtgcgggtc cacctcttgg tcccgcatta ggtccaatgg gcgtaaatgt
      541 attgcaagtg gtaaatatga tcaacgacaa aactaaggat tttccaggaa tgaaggttcc
      601 tgtcaaagta gaagttgatt ctgaatccaa gaagtttaca gttgaagtag gaattccccc
      661 tactgcagct ctggtttcca aggaggcagg tatcacaaaa ggttcaggtg ctgctggtac
      721 aaactttgct ggaaatataa ccatggccag tgctgttaaa attgccaaga tgaaaatcga
      781 tagctcttat gctaaggatc tgaagagtgc tgtaaaagaa gtgatcggtt cctgcgtaag
      841 tagtggagta aaagttgaag aaaagccggc aaaggaagtt ttctctgaca tttctgcagg
      901 taagtatgat gaattattca aatagtcctt tctatttttt aattgtaaag tataataatt
      961 taatagtcgt ccgtagctcc atgacacacg atgtcttaaa tacttttata ataataatcg
     1021 cttaaaaagg tgttatttaa gatccgtagg gatatctcat agtaaattta aaatatcccc
     1081 aaccatgtca gttatttcat aattttaagg tgaatgaaaa aaatgtcaat tcaacaagga
     1141 tcagctggcg gaatgccaat attaatattg aaagaaggtg cgacccagac aaaaggtcga
     1201 gacgctcaga aaaataacat aactgctgcg aaattgatct cagaaatagt aagaagctcg
     1261 cttggccccc gaggcatgga caagatgttg gtagattctc ttggcgatgt cactattaca
     1321 aatgacggtg cgaccatttt gaaggaaatt gatgttcagc acccagcagg gaagatgatg
     1381 gttgaaatca gcaaggcaac agataacgaa gtaggcgacg gcactacatc tgtagtaata
     1441 cttgcaggag cgctgattga aaaggcagaa gaattaattg gaaaagatgt tcatccaaca
     1501 attattgttg atggctatag aaagagcgct gttagggcta tcgagattct taacactcta
     1561 gcccagaaga ttgatggagg tgataaagat caattgacca gaattgcaaa gacttccatg
     1621 caaacaaaac tagtatcaaa ggacgcagat gagcttgcac aaattgttgt taatgcatca
     1681 atgcaaattt gcgaacaatt cgattccggg tataaagtag atattgacga tatcaaagta
     1741 gacaagaagg caggtggatc actacgggat actaaattaa tcaagggtat tgttcttgat
     1801 aaagaagttg ttcatggagg aatgccaaaa agaatagaaa aagcaaaaat cgttcttatc
     1861 aattctgctc ttgaaattga aaaaactgaa tttgacgcta aaataaatat caattctcca
     1921 gatcagatga acatgttctt agaagaagag aataggatgt tgaagggtat ggttgacaag
     1981 attaccgcta gtggcgctaa tgtagtaata tgccagaaag gtattgacga tattgcacaa
     2041 cattatttag caaaggcgaa tgttttgaca gtacgtagag tcaaagaaag tgacatgacc
     2101 aaactagcaa gagctacagg cgcacgagta ataaataact tggaggatct tacacctaaa
     2161 gatttaggtt ctgctgatct agtcgaagaa cgcaagattg agacagataa atgggtattc
     2221 atagaaggtg ctaaacatcc aaaagcagtg actatactta tcagaggtgg ctctcaaaga
     2281 gtggttgatg aggctgaacg gtcacttcat gacgctatca tggttacaaa agatgtactt
     2341 gaaaagcctg caatagttgc aggtggaggt tctcctgaat cctatacagc aggtaaatta
     2401 agagaatgga caagtactct ctccggtaga gaacaactag ctgcagaaaa gtttgccgaa
     2461 gcactagaag taattccact cacattagca gaaaacgcag gaatggatcc catcgatact
     2521 atgacagatt tacgtgcaaa gcagagcaaa ggctcaaaat cagctggaat tgatgcacga
     2581 aatgccagaa ttactgatat gtcaaaatta gatattgtag aaccactctc agtaaaagag
     2641 caggttatta aatcggcaac agaagtcgcc tcgatgattc taagaataga tgatgtaatt
     2701 gcctccagta aatcagccgg agggccacca ggaggtggaa tgccaccagg tggaatgcca
     2761 ccaggtggaa tgggagaaat gtaacgtaga tctaatttct ctttctttta tcacaattct
     2821 ttaattctgc agagattact tcttttaccc atattcctgt ttcattcatc tttaccaatt
     2881 tagttagata atcactccat gatattgttc catatgcttt aacccattgg ttataatgtt
     2941 ctttgaggct ttcgaaggat tgggcgtgat agtcacagta tttgtctgtt gatgcttttc
     3001 gtgagcaagc agaacatttc ctattcatga taaatgtagc tcttaatata actaaatatt
     3061 atattgttat ccttttaaat tgtgatatca tttttttgca cagaatggaa gacaggaaag
     3121 cttaaattat atatcaatta atcccaaaaa tgatttccgt catttaaata caaataacta
     3181 acagaaatga tagaaagata tgttaagtat cacaggctat ttcttctcga acttctcatc
     3241 ctcgcttatt tgtaagatag ttatggaagt agcggcgagt gcaaaaaatt aatagataat
     3301 atatatatat agatagatag atatattgtt aggaatatat ataaaaagat aattcatttt
     3361 attact
//
LOCUS       DATAAS010000194         2398 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2904465, whole genome shotgun sequence.
ACCESSION   DATAAS010000194 DATAAS010000000
VERSION     DATAAS010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2398)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2398)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2398
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2904465"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            216..1553
                     /locus_tag="VHF08_03120"
     CDS             216..1553
                     /locus_tag="VHF08_03120"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012744.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016757 - glycosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2067670.1"
                     /translation="MLAKVIHDDLNAGGGSERLAITTIELLNEMGFEVDIQTCKLPDI
                     KKLENNFGQLNIKIRRTKVLDLLSLLQPKEKAVYGSDDYKYDLIINTHGDLLPYISGD
                     SSQIPYSNDGGSSMIPQIRKKTKIITYCHYPLVPYYVKNGVYRRFLNKFIGAKSFGSS
                     NPSIEELLSNARALYDLTLNSTVILTNSEYSKCSIKQLYNKTEPIVLNPPVDINRFRK
                     LLVSSKSGREDIILVVSRFSPDKQIENAIEVAKVLHDGKVEFRMIIVGNVSRNDMDYL
                     QFLRSTINDNDLSAYVKLEVGASFKRLLYLMGKSKVYLHPLAGEPFGISVAEAMAAGL
                     IPVVPHVGGNSEFVPERYHYSKLEQASEIIRNALSSCFSDTYNNNNKNKMTTTTSYIA
                     NISEEELRLKISNLVLKFSTDNFKFNLKKIIDALTMVSDTTHIPLVNQQRIKI"
     gene            complement(1670..1912)
                     /locus_tag="VHF08_03125"
     CDS             complement(1670..1912)
                     /locus_tag="VHF08_03125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067671.1"
                     /translation="MPDIYEIHRYQNDSFQYIVATTNKHSEEHVKQDVDQFNAILSNE
                     MKSQGIKYVFAIGSTQKGTTKKNNKNKEERNTEHSI"
     gene            2216..>2398
                     /locus_tag="VHF08_03130"
     CDS             2216..>2398
                     /locus_tag="VHF08_03130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067672.1"
                     /translation="MVFGDSKKWNNNAQSESIRDKLREITQSQTPLKPRIEEAQRKLQ
                     IQVSKLDSISNKLQEKD"
BASE COUNT          848 a          414 c          417 g          719 t
ORIGIN      
        1 agcaaaacat aaaaagatac tttagactat catcaattgt aataatcact tatttttcta
       61 catcttctta ccgttgcact aaactgataa gtatatacta aatgtcatgg ccataagcaa
      121 gcatttgtat acgcatataa atagtataat gtttatacat atgtaccaaa agatctcgct
      181 ctaaaagagc tagaaacgga gggtatcatc caaaagtgtt agcaaaagtt atccacgacg
      241 atttgaatgc aggaggagga agcgaacggc tagctataac cacaatagag ctgctaaatg
      301 aaatgggctt tgaagttgat atccagactt gtaaattgcc agatattaaa aagttagaga
      361 ataattttgg acagttgaat atcaaaataa gaagaacaaa ggtactggat ttgctatccc
      421 ttcttcagcc aaaagaaaaa gcggtttatg gctcagacga ttacaagtat gatttaatta
      481 ttaatactca tggagactta ttgccttaca tatctggaga tagtagtcag attccctact
      541 ctaacgacgg tggcagcagt atgattccac agatcagaaa aaaaacaaag ataattacat
      601 actgtcatta tcctttagtt ccctattatg ttaagaacgg ggtatacaga aggttcctaa
      661 acaagttcat aggggcaaag agttttggta gcagtaatcc gtcgatagaa gagttgcttt
      721 cgaacgccag ggcactgtat gatttgacac ttaatagtac ggtgattctt accaattctg
      781 aatatagcaa atgttcaata aaacagttgt ataataaaac ggaacctata gttctgaacc
      841 ctcctgtcga tataaacaga tttagaaaat tattagtctc ttcaaaatca ggacgtgaag
      901 atataatact cgtagtttca agattcagcc cggataaaca aatcgaaaat gcaattgaag
      961 tcgccaaggt cctgcatgac ggaaaagtag aattcagaat gataatagtt ggaaatgtct
     1021 ccagaaatga tatggattat ctccaatttt tacgcagtac gataaatgat aatgatctaa
     1081 gcgcatatgt aaagttagaa gtcggagcta gttttaaacg attactctat ctcatgggaa
     1141 aatcaaaagt atatcttcac cctctggcgg gtgaaccatt tggaatatct gtagcagaag
     1201 ctatggcagc gggtttgatc ccagtcgtgc cacatgttgg tggaaattcc gaatttgttc
     1261 ctgagagata ccattatagc aaacttgaac aagcttcgga gataattaga aatgcgttat
     1321 cgtcatgttt tagtgatacc tacaataaca ataacaagaa caaaatgact actacgacct
     1381 cttatattgc caacatatcg gaagaggaat taagactcaa aattagtaat ttggtattaa
     1441 agttttccac tgataatttc aagtttaatc tgaagaaaat aattgatgca ttgacaatgg
     1501 taagtgacac aacacatatt cctctcgtaa accaacagag aataaaaata taaaatataa
     1561 gtacgataat actataatga gcggaggcag ttagtaagat cccagcccaa aaattgccaa
     1621 ttcacaatta cagcatcttt tcacaatcac aacaagacac ctactcatat caaatactgt
     1681 gttctgtatt cctttcttct ttatttttat tatttttctt agtcgttccc ttttgtgttg
     1741 agcctatagc aaaaacatac tttatgcctt gagacttcat ttcattgcta aggatggcat
     1801 tgaattgatc cacatcttgc tttacatgct cttcactatg tttattagtt gtggctacaa
     1861 tatactgaaa actgtcgttc tgataccgat ggatctcata aatgtctggc ataattgagt
     1921 ttctccttcc atccatattt tgtactacat attaagacat attgttagaa ccttttgagt
     1981 ttggctgcaa ttcgcgttat attgagtatt cgtatgagtg tcgactaaag cagtaggatg
     2041 acaacaacta cctgaatcct gaattcttct gtttggctaa aatagatagg tagctaagat
     2101 agacaggcaa atcatttagc atttcataaa atacacaata atatattaag ctcttacata
     2161 acttttttta atacacattc aaaataaccc tcttcggatc ataacaaatt atcaaatggt
     2221 atttggagat agcaaaaagt ggaataataa tgctcaaagc gaaagtattc gcgataagtt
     2281 gcgtgagatt acacaatctc aaacgcctct caaacctcgt atagaggaag cacaaagaaa
     2341 gttgcaaata caagtttcca aattagattc tatttctaac aagctacagg aaaaagat
//
LOCUS       DATAAS010000195         3120 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_754272, whole genome shotgun sequence.
ACCESSION   DATAAS010000195 DATAAS010000000
VERSION     DATAAS010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3120)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3120)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3120
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_754272"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..180)
                     /locus_tag="VHF08_03135"
     CDS             complement(<1..180)
                     /locus_tag="VHF08_03135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067673.1"
                     /translation="MSGQKKVKENIDNGIKSAKVLITAAGSIVAHGIIKSLKLVNQMS
                     NPVKYRIIATDMSVQA"
     gene            complement(205..1863)
                     /locus_tag="VHF08_03140"
     CDS             complement(205..1863)
                     /locus_tag="VHF08_03140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067674.1"
                     /translation="MTEQIGRSIKVRSLFSKYDKVQNPIISDLISSLPESFSSAVKMF
                     HSSSSSDMIKNGCVLDNRLKLRKYIEEFHFEANTDTAKVSDRCDMLCDPATEIITSIH
                     QPNLFPYSGVFKKIVLSQNIKRAVEEQNSKKKIIDLFLIVDHDFMDDEWIRVAQLPSI
                     HHSDGILELRLPITNSNRWRIVSQMPLPNHTLLHYWRRQINSWIRSSISGSKNIDKQR
                     LTNNLKNFWQQVESAHAKAKTYSDFNSFLMSQIVNNVWKYDTLFVRLSKLSSVFKEGF
                     KYLISNFKTYSNCLRKAEIAFLHHGIQTGVSSTSYLYAPLWLHCKCGSKASVKIKRGG
                     EQLELYGMCISCKRDLHLNIGNQTRLDLSEEIISNLSPRAIPILLLLCRDLGVTNFVS
                     GTGGSMGYTIVASMVFNELGIDMPHVVLWPSNDVYAGIGQSEAMSILKLTDQSQISRY
                     LEELKIQNTKYENKIKPFIIERTQKIKEHQPIQMLLSNLFDLKEKQRKVRQDIKIAEK
                     VSNALALKPCFIDYAVNFGMKRTEELWRQNLLNNKSLDSPVVMT"
     gene            2458..2682
                     /locus_tag="VHF08_03145"
     CDS             2458..2682
                     /locus_tag="VHF08_03145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histone"
                     /protein_id="HEX2067675.1"
                     /translation="MSTSPEFGLATMYRLIKKSGAERVSDEAADELRKILEDIADRIA
                     RQAVDLSVHAGRKTIKSEDVRLAAKNVLKV"
     gene            2838..2929
                     /locus_tag="VHF08_03150"
     tRNA            join(2838..2873,2894..2929)
                     /locus_tag="VHF08_03150"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2870..2872,aa:Cys,seq:gca)
BASE COUNT          978 a          545 c          518 g         1079 t
ORIGIN      
        1 agcctgaaca ctcatatcgg ttgcaataat tctatatttt acaggattgc tcatttgatt
       61 tactagtttc aatgatttaa taatcccgtg cgctactatg cttcctgctg cagtgattaa
      121 caccttggca cttttgatcc cattatcaat attttctttc acctttttct gtcctgacat
      181 gagacacaaa tcctttcatt cagactacgt cataacaaca ggcgagtcca agcttttgtt
      241 gtttaaaagg ttctgacgcc aaagctcttc tgttctcttc attccaaagt tcacggcata
      301 gtctataaaa catggtttta aagctaaagc attacttacc ttttctgcga tcttaatatc
      361 ctgacgaact tttcgttgtt tctctttaag atcaaataaa ttcgaaagta gcatctgtat
      421 aggttgatgc tctttaattt tttgtgttct ctcgatgata aaaggtttta ttttattctc
      481 gtatttggta ttttggattt taagttcctc tagatatctc gatatttggg actggtctgt
      541 taattttaaa atactcatcg cttcagattg accgatgcca gcgtaaacat cattagaagg
      601 ccaaagtaca acatgtggca tgtctatacc tagttcatta aacaccatgc tggctactat
      661 tgtataaccc atactgcctc cagtaccaga aacaaagttg gtcactccga gatctctaca
      721 aagaagtaat agtattggaa ttgctctagg agaaagatta ctgataattt cctctgatag
      781 atcaagtcgg gtctgattgc caatgtttag gtgaagatcc cttttacatg atatacacat
      841 accataaagt tctagttgct ctccacctct tttgattttt acagaagcct tactgccaca
      901 cttgcaatgt aaccataagg gagcataaag atatgacgta gaactgacac ctgtttgtat
      961 gccatgatgc aaaaaagcaa tctcggcttt tctaaggcaa tttgaatagg tcttaaaatt
     1021 agaaattaag tatttgaaac cttctttaaa aaccgaagat aatttagaga gcctaacaaa
     1081 cagggtatca tatttccata cattgtttac tatttgagac atcaagaacg aattaaaatc
     1141 tgaatatgtt ttagctttag catgtgcact ttccacctgc tgccagaaat tcttaaggtt
     1201 attggtcaat ctttgtttat ctatattctt cgatccggat atggaacttc ttatccatga
     1261 atttatctgt cttcgccagt agtgaagcag tgtatggtta ggtaaaggca tttgagatac
     1321 gattcgccat ctatttgagt tagtaatagg caaacggagt tctagtattc cgtcagaatg
     1381 atgtatacta gggagttgag caacacggat ccattcatcg tccataaaat catgatcgac
     1441 aattaaaaat aaatcaatga tttttttttt gctattttgt tcttctactg ccctcttaat
     1501 attctgagat aaaactatct ttttgaatac accactatat ggaaagagat taggctgatg
     1561 gattgaagta ataatttcag tagcaggatc acatagcata tcacatctat cgcttacttt
     1621 ggcagtatca gtgttagctt caaaatgaaa ttcttctatg tatttcctta atttcagcct
     1681 gttatctaag acgcaaccat tcttaatcat atcgctagaa gacgacgaat gaaacatttt
     1741 cacagcagaa gagaaactct caggtagtga ggatatcaag tcagaaatga tgggattctg
     1801 aaccttatcg tatttggaga aaagagatct caccttaatc gatcgtccta tctgttcggt
     1861 caaaatagcc tacccaacat gattcaatta tttttgacat ctattaaggc cttccttgta
     1921 ttgtgccata attatatatt attacaaaat tatgtaaata tagtattaat tcgttaatgg
     1981 tcattcctta cagttggtca atctattata aatatcttga aaacatttat caagtcagtt
     2041 gatgacttga taccttgttg catctccaaa ctctaatatg aagtaagttt tatgtaattg
     2101 attttattca aggaactgtc gaccattcta gttgaaagag ttttctgcga atctaaatct
     2161 ctatcagata tacatattag ggatgtgtag taaaatgttt cagaacttat taattttatt
     2221 ttcccctaat ttctttagtt ttccttttat tattttataa ctcatgatat aaaataactc
     2281 taggaagaaa ggaattaacc aaacaagatt gattcttgta atttttagcc atatcatcaa
     2341 ttcgatatta ccacagcggt taagacatct attatttagt tcttctattt gaatatactt
     2401 atcctgtaat aagaggaagg attatttatt gacaattgtc tttcactata atattatatg
     2461 tcaacaagtc ctgaattcgg tctagccact atgtatcgtt tgataaaaaa atcaggagca
     2521 gagagagtaa gcgatgaagc agcagatgag cttcgaaaga ttctagaaga cattgcagac
     2581 agaatagcgc gacaggctgt agatttgtct gttcatgcgg gtagaaagac cataaaatct
     2641 gaagatgttc gtctagcagc taagaacgtt ctaaaagtat aaagtatgat tagtccgaat
     2701 ttcaatcatt cttagtcgct ataagacggc tataatagga taatgttgca attgactggt
     2761 cactatttga aactcatagt gtattcattt tgatatatct taaagaataa tattgggaca
     2821 atttctattt aaaacatggt ggggtggcag agcggccatg cgttcgcctg cagataagac
     2881 gatttatgca gttagcgaat ttataagggt tcgaatccct tccccaccta atcactcaat
     2941 tttttaataa gaacaagtaa atcgaagtac tgcatcaata tttaattgta tttcgaccta
     3001 gcaagctagg agttcttttt aagatactga acaatatagt tattagttaa tgacttaata
     3061 tttattttaa cagcatcgac ttatcgttag attaatctct atgactctac aatacttaca
//
LOCUS       DATAAS010000196         2937 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2378148, whole genome shotgun sequence.
ACCESSION   DATAAS010000196 DATAAS010000000
VERSION     DATAAS010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2937)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2937)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2937
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2378148"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..616)
                     /locus_tag="VHF08_03155"
     CDS             complement(<1..616)
                     /locus_tag="VHF08_03155"
                     /inference="COORDINATES: protein motif:HMM:TIGR02271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YsnF/AvaK domain-containing protein"
                     /protein_id="HEX2067676.1"
                     /translation="METKTDSSTINWDDVIKKEVRGINDADLGEIQQVDENFILSQKG
                     TIGKEKFYIPKSLAAYYDDNILHVSITEEEAKNMYLQGSSPIVEEEERIKIMEERIVV
                     SRRETTGEEIIVIKEPASETKTVQVQLTHEEPIIERNPVGEATSSLHPVQSIKEIKVP
                     LMKEEIEISKQPYVKEEVVIKKKPVVETRTVTEEVKSEKVKVRRG"
     gene            976..1770
                     /locus_tag="VHF08_03160"
     CDS             976..1770
                     /locus_tag="VHF08_03160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067677.1"
                     /translation="MSEVSAYERIELDDAERSFLFKIINGQDSAYKILSYYKLRRQTM
                     SYKDIQHILRRLQDLYLIEEIRRKYLRGTMYYRLTTIGLFHIFFRMASYPPELLIKYK
                     DNIVLETLLYPYFEEETIKRSTARFYSTITQYLRKCCETTLYALDTIRSTSNVGDTGM
                     QAKQLEFDLRWHTKALGFRLAVMYNESNLLITNANVPNDNARIALYEVENDMKTLLSK
                     DDRFMCLILTIKKEFEDGYRELIDLKGVNDAQYSNVCNKILVISLS"
     gene            2063..>2937
                     /locus_tag="VHF08_03165"
     CDS             2063..>2937
                     /locus_tag="VHF08_03165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067678.1"
                     /translation="MKVRIYFFVILIIIVLGITLPALDNHLSYAQQQMTEELNNEIVV
                     VMVNLERIRTQLLLTEKSLNDGDKDMAFAHAFIPHSTTFPSIKNQLININKQFASDLE
                     AMLIDLPINIKTANDSIHNSKLEISRINNLLNGLSSQVHGSDTQADKSLIAQIIVFLL
                     RDAAKSYQISNAISAGPVLDRVEKQPQPSTKQFSKVDYENALGLVNVSKSNYNKISDS
                     LDERRKNEINSFFRQIENSISQKTDQESVLRLIAAIERDLSEELSLSEGSERAGEHTE
                     YFSTIRTLLSNVITEV"
BASE COUNT          995 a          476 c          461 g         1005 t
ORIGIN      
        1 tgcctcttct aaccttaact ttttcgctct ttacttcttc agttaccgta cgagtttcta
       61 caactggttt ctttttaata acaacttctt ccttgacata tggctgcttt gaaatttcta
      121 tttcttcttt cattaacgga actttgattt cttttatgga ttgaactggg tgtaatgacg
      181 aggttgcctc cccaacagga tttctctcga taattggttc ttcatgtgtt agctgcactt
      241 gaactgtctt ggtctcactt gctggttctt ttattactat tatttcctcg cctgtagttt
      301 ctctcctaga tacaactatt ctttcttcca taatcttgat gcgttcttct tcttcgacta
      361 ttggtgatga accctgcagg tacatattct tcgcttcttc ttcggttata cttacatgca
      421 atatattatc atcataatat gctgcaagag actttggaat atagaacttt tctttaccta
      481 tggttccttt ctgggagagg ataaaattct catctacttg ttgtatttct ccaagatctg
      541 catcatttat acctcttacc tccttcttta ttacatcgtc ccagtttata gtactactat
      601 ctgttttagt ttccatggta gaattactat acaatacata aaatttaata cttgataaat
      661 ttttttaatt ttgatgaatt ttattaatat caagtgaagc gttcatctca ttttggaaga
      721 agttcctaga gaatttaaga tcctatagta ggcaaataaa tacccaacct accactcatt
      781 ttatctgttt gctaatctga tttctaatat gacacaaagt gtgcttttta gaaaaaacac
      841 tcataagtat tatgagttat ttataaaact ataataataa aagccaattc ttattcttaa
      901 tgattaagga aaatcagata agaaatgctt attgagcctt ttttagcatt tgcttatatg
      961 aactattcga aatatatgtc agaagtatcg gcatatgaaa gaatagaact agatgatgca
     1021 gaaaggtcct ttcttttcaa aattattaac ggtcaagatt cagcatacaa aatactttct
     1081 tattataagt taaggcgtca aacaatgtct tacaaggata ttcaacatat tctcagaaga
     1141 cttcaagacc tatatttaat tgaagagata cgaagaaaat atttacgtgg aacaatgtat
     1201 tacaggttaa ctacgattgg gttatttcat atctttttta ggatggcaag ttatccgcca
     1261 gaattattaa taaaatataa agacaatata gtgttagaaa ctctgcttta tccatacttc
     1321 gaggaagaaa ccataaaacg ttctactgct cgtttttatt ctacaataac tcaatatttg
     1381 cgtaaatgtt gtgaaacaac tctctatgct ctggatacca tcagatctac atcaaatgta
     1441 ggggacactg gaatgcaagc aaaacagtta gaatttgatt taagatggca tactaaagct
     1501 ttgggcttta gactagcggt tatgtataat gagtcaaatt tgctaattac taatgcgaat
     1561 gttccgaacg ataatgctag aattgcatta tatgaggttg aaaatgatat gaaaacactt
     1621 ctctcaaaag atgatagatt catgtgcctg attctgacca ttaaaaaaga atttgaagac
     1681 ggatatagag aactgattga cctaaaaggg gtaaatgatg cacaatattc aaatgtatgc
     1741 aacaagatac tagtaatatc cttgtcatag tatatttttt tcttggcttt gatgatatga
     1801 tgatgccaaa atagagctgt ctttctttca tcgatctaaa attattgttg tctgaaaaaa
     1861 gtctctgcta tcgctaattc agatagtata tatttgagtg ataaatactt ttgaatacag
     1921 actgtttata taggttaaaa tactaattag gtaagcctaa tgattgctgt cagacaggca
     1981 gagaactatc gaaatgatag cacaatatgg taattgaaaa atgacaataa taaaactaaa
     2041 agagttaaaa aatttacaag gtatgaaagt gcgaatatat ttttttgtta ttcttataat
     2101 catagttcta ggcatcactt tgcctgcttt ggacaatcat ctatcttatg ctcaacaaca
     2161 aatgacagaa gaattgaata atgagatagt cgttgttatg gttaaccttg aaagaataag
     2221 aacacaactt ttactaactg agaaaagtct taatgatgga gataaagaca tggcttttgc
     2281 tcatgcattt attcctcatt ccactacttt tccatcaatt aaaaatcaac taataaacat
     2341 taacaagcaa ttcgcctcag accttgaggc aatgctaatt gatttgccga ttaatataaa
     2401 gactgcaaac gattcaatac ataattcaaa actggagatt tctagaatta ataatctatt
     2461 gaatggtctt tctagtcaag ttcatgggtc agatactcaa gcagataaga gcttaatagc
     2521 ccaaatcata gtatttttgt taagagatgc tgctaaatca tatcaaattt ctaatgcaat
     2581 atcagcaggt cccgtattag acagggtaga aaaacaacca caaccatcaa caaaacaatt
     2641 cagtaaggta gattatgaga atgcactagg tttggttaat gtatccaaat caaattataa
     2701 taaaatatca gattctctag atgaaagaag gaaaaatgag attaattctt tcttcagaca
     2761 aatagagaat tctattagcc aaaaaactga tcaggaatca gttttacgtt taattgctgc
     2821 aatagaaaga gacttatcag aagagctttc attgagtgaa ggcagcgaac gtgcagggga
     2881 acatacagaa tatttctcta caatacgaac tctactatct aatgtaatta ctgaagt
//
LOCUS       DATAAS010000197         2299 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2378192, whole genome shotgun sequence.
ACCESSION   DATAAS010000197 DATAAS010000000
VERSION     DATAAS010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2299)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2299)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2299
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2378192"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(144..440)
                     /locus_tag="VHF08_03170"
     CDS             complement(144..440)
                     /locus_tag="VHF08_03170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067679.1"
                     /translation="MVIQRGLMNSTMKSTNNNDHIDHNNRENINKCPKCLSGDMMEHP
                     SFLSVPYTSRSKVAEKTKTAIEDQDADFIFKFFSCKRCGYSEFYVVNDTVRKRI"
     gene            complement(441..578)
                     /locus_tag="VHF08_03175"
     CDS             complement(441..578)
                     /locus_tag="VHF08_03175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067680.1"
                     /translation="MNDNIEKTNESRKNLIQRHNGEKKERATVGRDIKTAWIFLLHNP
                     I"
     gene            1258..1422
                     /locus_tag="VHF08_03180"
     CDS             1258..1422
                     /locus_tag="VHF08_03180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067681.1"
                     /translation="MHPEDLNNIWICSNCGSASAFHSDIMDHMTTTSHKRIKKFDLNT
                     GRLIEVRAMV"
     gene            complement(2111..>2299)
                     /locus_tag="VHF08_03185"
     CDS             complement(2111..>2299)
                     /locus_tag="VHF08_03185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067682.1"
                     /translation="TADELRYVAFAIPTTHASLILQYGMGAPQILEGWSLEIGFVVIF
                     AYMVGFALLAKTKAVWRE"
BASE COUNT          759 a          413 c          417 g          710 t
ORIGIN      
        1 ctcattaatg ctgcgtgatg acatgttgct atatcttttt accgtagagg attaactttt
       61 aaagggaatg aggaaatata atctaaaagt atagattaac aggagtggat aatggcagtg
      121 ctttcgctgg atctaattgc ggatcatatc cgctttctaa cagtgtcatt gaccacataa
      181 aattctgaat atccacatct tttacatgaa aagaacttaa agataaaatc tgcatcttgg
      241 tcttcaatgg ctgtctttgt tttttcagcg acctttgagc gtgatgtgta aggcacagat
      301 aagaatgaag gatgctccat catatcccca gataagcact ttggacactt attgatgttc
      361 tctctattat tatgatcaat gtgatcatta ttgttagtag atttcattgt gctattcatc
      421 agacctcgtt ggatcaccat ctatattgga ttatgtaaca gaaatatcca ggctgttttt
      481 atatctctac ctacagttgc tcgctctttc ttttcaccat tgtgtctttg aattaaattc
      541 tttctactct cattcgtttt ttcaatattg tcgttcattc ttgtctaatc atagatcata
      601 tcctataaga cgaatatgtt ttatcgtatg ataagtatat atcataaatt gtaaactcat
      661 tcattgtttt cgtttctcta ttggatctgc gagaagtatt ctacgttaaa tgcttgcatg
      721 ccacaaacaa attctacaaa ttgcaagagc gactagcaca taaaaaatga tgagaagatt
      781 acaatacttc tgccaagtct taatatcgga tatcaggatg ccagcattga tgagctttta
      841 gattgccaga atgctaaagg atgtgcgact ggaaatgaat gtcatattga tcacaacaaa
      901 gtttgaagta aacaaaggag aatcgagcta tttttccatc aacgcctatt gatgatgtaa
      961 taagaaaacc atctacgccc tagcagctag tataaaaata agagaatctt tgagcgctat
     1021 ggctcaaggg actacaagac gagtaaatga gcacaagagc tcataagtat caagtctgaa
     1081 aaggatatca catattaaag agagagatat actagaatag cctaatctcg taggttctgg
     1141 acaaagatta taataactac gatagagaag ggtgtcactt atagtcatta cctacataag
     1201 aagaactccc aatgcttaaa ttgaatttgt tgctgtagta cagcgggtaa tacaaatatg
     1261 catccagaag atttgaacaa tatttggata tgttctaatt gcggaagtgc ctccgcattt
     1321 cacagcgata ttatggatca tatgactaca actagtcata aacgcataaa gaaatttgat
     1381 ttgaatacag gtaggctcat tgaagttagg gcaatggtct aactacagac cacctctttg
     1441 ctataatgct atgatcttat taaagacacc acatattctc taatatgtta ttcagtccat
     1501 aagtcatagc gtgggcctca gtcagcacga gaaattaatt ggagattatt attctcagca
     1561 gataaaagcg taacatacca taggtatcga caaataactt tcaccgtgaa aataataagg
     1621 taattcctct agttctatcc gtcatatttg ctgaagatgc gggattttca tcgaagcatg
     1681 accattttga taaaaacata gagttggaga gctattggaa tgacactcat ttggagtggt
     1741 taaaagcaaa ttaaatatct cggcaatatg tgcacaccct gtcagcattt tggaacaagg
     1801 acccaatcta tctgcaaaaa aaccaaatcg gttaagttca cagctgaact cgagagttac
     1861 aaaaaagcag tataagagat agcaatgctt taggtatctt aattttagaa cccgaaaagg
     1921 atataatcaa aacatatatc tgcatatttg gcttcagaag gaattgaggt ggtaattgta
     1981 ggttacataa agaaatgctc agaacaagtc ttctcacctt ccgatgacgg ctttaatgtg
     2041 gttatgatga tacacatcta caaaatagta gtaacagtaa taaatgtcag ccaatatttc
     2101 ttgtgtttta ttattctcgc cataccgcct ttgtctttgc tagtagtgca aaccctacca
     2161 tatatgcaaa aataactaca aatccgatct ccagtgacca cccttctaga atttgcggag
     2221 cgcccatgcc atactgcaat attagcgacg catgggtagt tggaattgca aaagccacat
     2281 accgtaattc gtctgcagt
//
LOCUS       DATAAS010000198         3609 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1362270, whole genome shotgun sequence.
ACCESSION   DATAAS010000198 DATAAS010000000
VERSION     DATAAS010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3609)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3609)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3609
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1362270"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(191..586)
                     /locus_tag="VHF08_03190"
     CDS             complement(191..586)
                     /locus_tag="VHF08_03190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067683.1"
                     /translation="MSEVSQPRQEVVYNRNRPLESIFKNSPARVLDFLILNQNFDYSA
                     AEISTITGIPLRTVQRVMPHLVQKELVKETGKIGNTRMYIINSKSELSELLRQYVLTR
                     INIDIDKTRKQQDISKNNNNSLIVEQSEI"
     gene            709..1482
                     /locus_tag="VHF08_03195"
     CDS             709..1482
                     /locus_tag="VHF08_03195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067684.1"
                     /translation="MASVSQWRKWLLQQLIGEGVHNALLDESIRKEVGRHYDANLDIA
                     LRLLMDDGIIMSLESNRQKKYVVNYDKLDDAQEIINSRLRDNGNDENVLIQEYMPEPE
                     GYVYWFNNTGNRQFRKQNIYNIYLKKTDNMDFAAQLITKSMGGHKTIYMGSLNESDSY
                     ISKLWRAATIIAKESKDDTFILQDLQDKERMACGNNRQRGKIALAIFRKLGYIKPVGT
                     KGNSTRFKLTGKKPVDITLDEIFDNNMTQNKASINMYYS"
     gene            1729..2049
                     /locus_tag="VHF08_03200"
     CDS             1729..2049
                     /locus_tag="VHF08_03200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067685.1"
                     /translation="MHNKLSLEKIKPLTLNDISPKWAERLHQLPFPLSFQWLRWYLEI
                     KCASKCVVGEAYGFSSSYIHNCEECDSFGWKFMFSFMLHSYSRLEENKQLFVNHWNEK
                     HRHR"
     gene            2582..2965
                     /locus_tag="VHF08_03205"
     CDS             2582..2965
                     /locus_tag="VHF08_03205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067686.1"
                     /translation="MTTTAAVEDTKENVKGDKRKTARRKGKHAYSTENRRMVWENVVW
                     PLILKVNRSYFTLKEYHAKRDEFCKLNNIKPPKVAGGFVSLLVKGILAREKNIYSIHY
                     RLIPYMRKKTNLEYGLVIREINTKR"
BASE COUNT         1289 a          519 c          632 g         1169 t
ORIGIN      
        1 acccaataag atgtatgtat gtagcttgac ctttattacc aattctattg ttatttagat
       61 aatatcagta gatgatgagt atgatgaaat aacaaggaaa aagaaatcta aaagtaataa
      121 tttcttctaa aatatgaact ctgctagttt gctagcaaag atacagaaac aatataaaat
      181 tattagagac ttaaatctcg ctttgttcta caattaaaga attattatta ttttttgata
      241 tatcttgttg ttttcgtgtc ttatctatgt ctatattgat cctagtcagt acgtattgtc
      301 ttagtaattc agataattct gattttgaat taataatata catcctagta ttgcctattt
      361 tacctgtttc cttaaccaat tccttctgaa ctaaatgggg cataactctc tgtacagttc
      421 taaggggaat tccagttatg gtacttattt cagctgcaga ataatcaaaa ttctggttca
      481 gaataagaaa atctaaaacc ctagcgggac tatttttgaa tatactttct aatggtctgt
      541 ttctattata tactacctct tgcctaggct gtgacacttc agacacatag gcttgtacgg
      601 cttggcaata tttaaaccta cgccaaattt ggcgttagaa aattctaaca aattatgaca
      661 cttatggcgt aagtttaaat acttttattt tagcttttac acataataat ggcttctgtt
      721 tcacagtggc gtaagtggtt attacagcaa cttatcggcg aaggtgttca taatgcatta
      781 ttggatgaaa gtatacgtaa ggaagttgga agacattatg atgcaaatct agacattgcc
      841 ttaaggcttc ttatggatga tggcataatt atgtcattag agtcaaatcg tcaaaaaaaa
      901 tacgttgtta attatgacaa gttagacgat gcgcaagaga ttataaattc aagactaagg
      961 gataatggca atgatgaaaa tgtcctaata caagagtata tgccagaacc cgagggttat
     1021 gtgtattggt ttaacaatac tggaaataga caattcagaa agcaaaatat ctacaatatt
     1081 tacttgaaaa agacagacaa catggatttt gcagcgcaat taataaccaa atctatgggc
     1141 ggtcataaga ctatctacat gggctcatta aatgagtctg attcatacat ctctaaactt
     1201 tggcgtgctg ctactataat agcaaaggaa agtaaggatg acactttcat attacaagat
     1261 cttcaagata aagaaaggat ggcatgtgga aataatagac agcgtggcaa aatagctcta
     1321 gccatatttc gtaagttagg ctatattaaa cctgttggga ctaaaggaaa ttcaacaaga
     1381 ttcaaactga cgggcaaaaa acctgttgat attacattag atgaaatttt tgataataat
     1441 atgactcaaa ataaggcgag cattaatatg tattatagct aatttactat tagtatacgt
     1501 gtctataata aattagattt tactttaaac gcaataaaca ctggagtttt cttcattcac
     1561 aattgcaaaa tcagtcgaaa tttacaaata tgattaaaca gtcattctaa tatcacaata
     1621 taatatttga aatatgaata cttattttac tatttatcag gcaaaataga aaattaacca
     1681 atcagataaa ctataatcct ctaatattat gtaaagtatc taatattaat gcataataaa
     1741 ttatctctag agaagataaa accgttaacc ctaaacgata tctcgcctaa gtgggctgaa
     1801 cgcctacacc aactaccatt tccattgtcc tttcaatggc taaggtggta tcttgagata
     1861 aaatgtgctt caaaatgtgt agtgggagaa gcatacggtt tttcatcatc ctatattcat
     1921 aattgcgaag aatgtgatag ctttggctgg aaatttatgt tttcttttat gctccattca
     1981 tattcaagac tagaagaaaa taagcagttg tttgttaatc attggaatga aaaacataga
     2041 cataggtaga gttagctaat tctagaccaa ttgcaaggaa tattttaatt ctaattacta
     2101 atataaagga atagaatgaa ttatgactgt aagttatagt atagaaatga tttatgatct
     2161 aactgaatat ctatatctag atatctctgc tcacaatcct tctagtgcaa gtagaaaaac
     2221 aatatccatc ttatgtatct cctgagtagt caaggactaa tggaaatatg actcgttctt
     2281 ctgagcgtag aagagacagc gagccgctgt ctgccgacgg ctgttataag gatagtaata
     2341 atagtaagtg agaattgata cttccattct tcatgaagcg tgatttttgt cttttaaggg
     2401 tcaagtatag tgtcttagat tgatcccata ctttgagatc aaatcttcat tttttaggat
     2461 agcagataat tcgaaagact tatgtgctgt attgatcatg atgtgctata gatttatcaa
     2521 acgtggtgtt taaatgtgcc tccccacaag cagtaatgaa ggatttccat aacgagaaaa
     2581 aatgacgaca acagcagcag tcgaagatac aaaagaaaat gtgaagggag acaaaagaaa
     2641 gacagccaga agaaagggca agcatgcata ttcaactgaa aatcgtagaa tggtgtggga
     2701 aaatgttgtt tggcctttaa tattgaaggt taacagatca tatttcacat tgaaagaata
     2761 tcatgctaaa agagatgaat tttgtaaact taacaatata aagccaccaa aggttgcagg
     2821 tggttttgtg tctctattgg ttaaagggat ccttgctaga gaaaagaaca tctattcaat
     2881 tcattatagg cttattccat atatgagaaa gaaaacaaat ttggaatacg gtcttgtgat
     2941 tagagaaatt aatacaaaac gataaacaga taaattaact tgaactataa cagtttagag
     3001 attaatattt actacagttt tattcgccat tggaaagtat gctaaatcgc tttttgaaat
     3061 aaaaaattat ttaaatgtgg ctcttaataa caacttggtt ttagaatata gttctcgtct
     3121 ctatttgtat tttaaatgat gatatctaaa tattggcact caaagacatt tcggttctaa
     3181 aggaattaag acttgaaaga taatatatat tgaaaagtag taatatgact cagtcggtat
     3241 atatcatatt agataaatat ccaaattaag tatctgcaat gatgcttttc tgtaggaatt
     3301 attaatttta tgctttgata gaatataagg ttgtagtaat catatgtgtt gtttagtcct
     3361 taagatgttt ggctagaatt tagaatgata ctaatactaa ctaaaataac gataaaatca
     3421 aatatcggtc tagaatagat tattacagta gcctgtgtat atgaagcccg gtcgaacctg
     3481 aattatttaa ttaaatcagg tgccgaatct agtggccaat ctacttctcc aaggtagggc
     3541 tatggatttc aggctctgga tctataaaga gaaaagaaac ctggagacag cagttcgaat
     3601 ctgctccgg
//
LOCUS       DATAAS010000199         8726 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_767288, whole genome shotgun sequence.
ACCESSION   DATAAS010000199 DATAAS010000000
VERSION     DATAAS010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8726)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8726)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8726
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_767288"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            187..1101
                     /locus_tag="VHF08_03210"
     CDS             187..1101
                     /locus_tag="VHF08_03210"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HEX2067687.1"
                     /translation="MGGLNSWLLKETNGVRTLDKGILYFLKIAYLSLRILLRLALGRR
                     RRDRIFIERGFDFNTFLYKVFKVLGIGNSMLLRINVPKYDYKFYCRINNREDLVFMTN
                     HEEDIIEHFTPKEGDIVVDIGAHMGRYTIIGSKRVGAQGKVVAIEAHPENFEMLNSNI
                     KLNQLTNVIPLNYAVYSKETKIKLYLPEVESGYTIYNTIMSNRARTEDKFVEVNANTL
                     DYILQSKEITDVNWIKIDVEGAEFEVLKGASNVLSKSKDIALLIEVHGLDNYRPILEF
                     VSSYNFKIEFEKSNKTGDWRHIVLRKHD"
     gene            complement(2321..2506)
                     /locus_tag="VHF08_03215"
     CDS             complement(2321..2506)
                     /locus_tag="VHF08_03215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067688.1"
                     /translation="MVNGHCDCANCKDPIAGWIPLSDENNTIAGRFDLCATHKEQFIQ
                     EEISKNNMKDDRIIQNN"
     gene            2774..3370
                     /locus_tag="VHF08_03220"
     CDS             2774..3370
                     /locus_tag="VHF08_03220"
                     /inference="COORDINATES: protein motif:HMM:NF017758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HEX2067689.1"
                     /translation="MTQQENNVANKVQQYLNEILSIENAALDRLQLRTEETTISDVKQ
                     QLKQHLEETKAQQDRLKQLVTNWGGSPTTSKAQLPILKFPSELSTTLDRTSIEDGKVR
                     DIIKDTENRMTPEKELMRAKEDMIIENTEIISYKMLIQLAEKLNVQDAIPILKQNLQE
                     EEVMATWLMANVPTMLNRLWPYIESSSGNRTTSTTTSV"
     gene            3763..4599
                     /locus_tag="VHF08_03225"
     CDS             3763..4599
                     /locus_tag="VHF08_03225"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2067690.1"
                     /translation="MPFKTADLRKAMISLEQFKTYTLSPHHERYSFPFIRGTYFAYRK
                     IDVLRLISISKIVAKNGKSRYLDVGCGNGDFLTKIREFIPNAVGIDNDPKVFYYYNMV
                     KPDYIKIADARWGIDGQFDIIFVGWMDPGMDFRDAVASKTDVIVTTLDQGISLEAEFE
                     GNGFERIAKWRTPSWEDVNIEIMNRYYTKMSKKTYLSLSKLRGAHNLWYIYSRKPSKS
                     EAIKSILIERLDDEKKDMCERFDFEDVLDECGFRYLEELQNLSSNVERKERLWDIQFN
                     DI"
     gene            4696..5958
                     /locus_tag="VHF08_03230"
     CDS             4696..5958
                     /locus_tag="VHF08_03230"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX2067691.1"
                     /translation="MKVSVLGAAKEVGRSAFLVNSNSTNILMDYGVLLKREPIFPMHV
                     KPKDIDAVVITHAHLDHSGFVPSLFLSESSNLQALATLPTFDLSQLLIEDMIKISGFY
                     LPFEYIDLMTMINYSKNLEYKEPYMVKDVKITLHESGHILGGSTVVVEHDRKRIFYTG
                     DINTRGSKILRPADLNLDEIDLMIIESTYSQTDQVSREQSERDLLEYAHDVVERGGTL
                     FIPAFSVERSQEIACVLKEYNFPYKVVMDGMALKANQIMMKYPSFLRNAEVFKQAIGE
                     AEWISGWNRRKKVVKEPCVIISPAGMLVGGSAVFYMQEIAKNDKNGIALVSYQGEGTP
                     GRTLLEKRIMTFDGKVRKCLADVKRFEFSGHNSRNELFEILDRIKGNPKVLTVHGDGP
                     SCTKFAEEIADKYGYDAKAPNIGEVVEV"
     gene            complement(6240..7208)
                     /locus_tag="VHF08_03235"
     CDS             complement(6240..7208)
                     /locus_tag="VHF08_03235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2067692.1"
                     /translation="MINIRNLVKRYQNIIAVNNLSLDIHENEVFGLLGPNGAGKTTTI
                     HMLATLLKPTFGTASVNGYDIVNEPAKVRASIGIVFQAPSSDDILTGYENLKLHSLLY
                     SVPRHIREKRISEVLELVGLTERKDDRVKQYSGGMRRRLEIARGLIHKPKVIFLDEPT
                     LGLDPTSRELMWKYIKLLVREENVTIILTTHYMEEADILCDRIGIIDKGKIIALDTPS
                     KLKEMIGNDIIKLKSKKNNIQDIEKLKSFTFIHKIENQNINGEEILILSVDNASRNLP
                     IILKHINVESVEFTSTTLNDVFLEFTSRDVKEQPEGGFMERYAQYD"
     gene            complement(7398..7535)
                     /locus_tag="VHF08_03240"
     CDS             complement(7398..7535)
                     /locus_tag="VHF08_03240"
                     /inference="COORDINATES: protein motif:HMM:NF039193.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5679 domain-containing protein"
                     /protein_id="HEX2067693.1"
                     /translation="MEAYCVKCKSKRSMKDEKKVTMKNGRPATTGICSICGTKMFKIG
                     Q"
     gene            complement(7994..8233)
                     /locus_tag="VHF08_03245"
     CDS             complement(7994..8233)
                     /locus_tag="VHF08_03245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067694.1"
                     /translation="MKHHKKQQHSQQKKNNTNEQNNITSSGKVTSMIGKSVFTLTFNI
                     DVARTLNFKHNESLSFNIIGNQLIIKKDDSNRIDW"
BASE COUNT         3070 a         1257 c         1455 g         2944 t
ORIGIN      
        1 tttgcttgat atatatatat atcaagcaaa aacagtgttt gtgttatttg ctacctgtag
       61 atttaattta taaaccattt atattttgaa aaaagtacaa gacaaatgat gatatgttta
      121 gatcggtata tgaatgattc aaaaagagtt taaaggctat tttgtagtaa ttgacaatgg
      181 tatgatatgg gaggattaaa ttcttggtta ctaaaagaaa caaatggagt aagaacctta
      241 gataaaggca tattatattt tttaaaaatt gcttatttga gtttaagaat tttgcttaga
      301 ttagctttag gaagaagaag aagagacaga atattcattg agcgaggatt tgattttaat
      361 actttcttgt ataaagtatt caaggtttta gggataggta actccatgct attaagaatc
      421 aatgtaccaa aatatgatta caaattctat tgtagaatta ataatagaga ggatttagta
      481 tttatgacaa atcacgaaga agatataata gaacacttta ctcccaaaga aggagatata
      541 gttgtagata ttggtgcaca catgggtcgc tatacaatta taggctcaaa gcgagttggt
      601 gcacaaggaa aggtggttgc tattgaggcg catcctgaga attttgaaat gctaaatagt
      661 aatattaaac taaatcaatt aaccaatgtt atacctttga attatgcagt atattctaaa
      721 gagacaaaaa taaaattata tttgccagaa gtagaatcag gttataccat atataatact
      781 attatgtcca atagggcaag aactgaagat aaatttgtag aagtaaatgc caatacatta
      841 gattacatat tgcagtcaaa agaaataaca gatgtgaact ggattaaaat tgatgttgaa
      901 ggagcggaat ttgaagtatt aaaaggagct agtaatgtgc tatctaaaag taaagatatt
      961 gcacttttaa ttgaggttca tggattagat aattatagac caatactaga attcgttagt
     1021 tcatataatt tcaaaataga atttgaaaag agcaataaga ctggagactg gaggcatata
     1081 gtcttgcgga aacatgattg aacacaatct aactataaat ttatgaaatt taacgagcaa
     1141 acttaaattt taggatgtaa tggttttcct gcaattaagt ttcaccaatt aatggtatgg
     1201 ttttttatgt ggctgtttct gaattttgat ctggaagtat tatccaaaga acaaagataa
     1261 gaagatgaaa ttatctagtt gttagaattt cataggaggt gcaaatttct gtgtcatttt
     1321 ggatctttta tatatatcgt aagtctcagt taaagatcat tcatttaata agagataaga
     1381 tgttagatat cacatattaa gactggtctt attcgcatat acgatgtatg ttgctttgtg
     1441 cgacccctta tctggactcc taacgtcaaa gtgatcatag catgcactcc ctctccctac
     1501 ccagattcct attttaaaag taagaaagta tctataaatt tttagtatta ttatgactaa
     1561 cacagaattg gagaaaagta ctgagatcaa aaattctcag atcgaacata cacgagaaat
     1621 acctgttgaa ataaatcatg aaattgaatg cccaagatgt tatgcgatga tgtctttatg
     1681 ctctgatttt gacagtttat tttattcctg tgaagaatgt agttttatcc tttatacaat
     1741 aaagaaaaac tatttacctt aattgaagtc ctaatatact gtaaataact ataccaaaat
     1801 ggtatttgct tatgatagac ataagagata gaattcaaag tattccagcc aaatcactat
     1861 ctatctactt gattgttgca ttgatgcttt catttcagtt gtagaacagc tttcgatcgt
     1921 ttatagcaat taccaactat aattgtttgg taaagatgca tataaagatc tatttcaaat
     1981 atttttttct tcttataaag atctccacct gtgttacacg tctatctaga aaaaattgaa
     2041 ttcaaaacac aatttgctct agtcgcattc gtatatatta ttattaagga tgatacaaca
     2101 tataactaaa agagaagtta aagattctat gtctttagaa atgaatatta tatatcgaca
     2161 agtaatctac cgtaacaaat caaattgtta atgtagcact aaatcttttt catatataaa
     2221 caatcttttt acatttagag gtgacaatca acaatacctt cgataatgta attatgaagt
     2281 tcattatgag ataatagaag aatactcatt tcaataataa tcaattattc tgaattattc
     2341 tgtcatcttt catattgttc ttgcttatct cttcctgtat gaactgttct ttatgcgtag
     2401 cacaaaggtc aaacctaccc gctatcgtgt tattctcgtc acttaaagga atccaacctg
     2461 caataggatc tttgcaattt gcacagtcac aatgaccatt gaccattttt gaagattatt
     2521 attgtcaaga catataatta aatcggtttt ttctatagtc ttttgatgat tttgagttct
     2581 actactactt gacataattt aacttcaata tgtgattgta attgtgtaat agtttcctga
     2641 attgtatctt ctttagcaat ttctcggaaa gtaacttagt atgaacattt aatattaagg
     2701 ttataaagtg aatagattgt tagtcaagtg ttaaatggta tttttgccta agacataagg
     2761 agaacgaaga taattgactc aacaagaaaa taatgtggct aataaagtcc aacaatattt
     2821 gaacgagata ttatcaatag aaaatgccgc acttgatcgc ctacaattaa gaacagaaga
     2881 gacaactatt tcagatgtta aacaacaact caagcaacat ctagaagaga caaaagctca
     2941 acaagataga ttaaagcaac tcgttactaa ttggggaggt agtcctacta cttcaaaggc
     3001 tcaattacca attttaaagt ttccatcaga attatctaca actttggatc gtacgagtat
     3061 agaagatggg aaggtaaggg atattataaa ggatacagag aataggatga cgccagaaaa
     3121 agaattaatg agagctaaag aagatatgat aatagaaaat acagagatta tatcttacaa
     3181 aatgcttata caattagcag aaaaactaaa cgtacaagat gcaattccaa tcttgaagca
     3241 aaatcttcag gaggaagaag ttatggcaac ctggcttatg gctaacgtac ctacaatgct
     3301 taatcgtcta tggccttaca tagagtcttc atctggcaat agaacaacat cgacaacaac
     3361 gagtgtttaa ttcagtcatt tcttaaatat attaatttaa aattctatta acagatcacc
     3421 tatatctaat atatataata aatactgata ttatttaaat aataattata acatgtacat
     3481 acctgttaga atagattacg tttcattctg aaaaatatag agaatatcgt gaatacaatg
     3541 actggaatga tttgtaaaca caataactag attttagtct ttgttgtaag cgcttcaatg
     3601 ttctggaagg gcgaaatttt tctctaccaa atttttctct aatacttgac gactgcattg
     3661 tatattatta tgttatttat ttagcccaat agatcttctt taccgtcgat gtaatcgtta
     3721 aataggccaa gttatgagat tacttcgaat aataaaaata atatgccctt caaaacagct
     3781 gatctacgaa aagcgatgat atccttagaa caatttaaaa catatactct atcgcctcat
     3841 cacgaacgtt atagttttcc ttttattcgt ggcacgtatt ttgcatatag aaaaattgat
     3901 gtactccgtc ttatttctat atcaaaaata gttgcaaaga atggcaaatc gagatacttg
     3961 gatgtaggtt gcggcaacgg tgattttctt acaaaaatac gagagtttat tcccaatgct
     4021 gtgggtattg ataatgaccc aaaagtcttt tattattaca acatggttaa acctgattat
     4081 atcaagatcg ctgatgcgcg gtggggaatt gatggtcagt tcgatattat cttcgttggt
     4141 tggatggatc ctggcatgga tttccgagat gcagtcgctt caaaaacgga tgtgatagta
     4201 acaacattag atcagggaat aagtttagaa gctgaatttg aaggcaatgg ttttgaaagg
     4261 attgctaaat ggaggacgcc atcatgggaa gatgtcaata ttgaaattat gaatcgttat
     4321 tatacaaaaa tgtctaaaaa gacttaccta tcgttatcaa aattaagggg tgcgcacaat
     4381 ctatggtaca tttatagcag aaaacctagc aaatcagagg ccataaaatc aattcttata
     4441 gagagattag acgatgagaa aaaagatatg tgtgaacgtt tcgattttga agatgtatta
     4501 gatgagtgcg gatttaggta tcttgaagaa ttacagaatc tttcttcaaa tgtagaaaga
     4561 aaggaacgtt tatgggatat tcaatttaat gacatatagg aatacgataa tgattgtgtc
     4621 actccgctaa aaataattat ttaattatgg tgaaagactt aaagcatgta tatataatac
     4681 tctagaagat aaaacttgaa agtatctgtt ttaggtgctg caaaggaagt tggacgttcc
     4741 gcattccttg taaatagcaa tagtactaat attttgatgg attatggtgt gcttttaaaa
     4801 agagaaccta tctttcccat gcatgttaaa ccgaaagaca ttgatgcagt agtaattact
     4861 catgctcacc tagaccattc aggatttgtt ccatctttat tcctatcaga atcaagcaat
     4921 ctgcaggccc ttgctactct gccaacattc gatctatcac aactgctaat tgaagatatg
     4981 atcaaaatat caggcttcta tctgccgttt gaatatattg atcttatgac aatgataaat
     5041 tactcaaaga acttggagta caaagaaccg tatatggtaa aagacgtcaa gataactcta
     5101 catgaatcgg gacatattct aggaggctct acagttgtag tagaacatga cagaaaacgt
     5161 atattctata ctggagatat aaatacaaga ggttcaaaaa tactgcggcc tgctgatttg
     5221 aatttagacg agattgattt aatgattata gaaagtacct attctcaaac tgaccaagtg
     5281 tctagagaac agtctgaaag ggatctgctc gaatatgccc atgatgtagt tgaaagaggt
     5341 ggcacattat ttattcctgc attctctgtt gagagatcgc aggaaatagc ttgtgttcta
     5401 aaagaataca attttccata caaagtagta atggatggaa tggcgcttaa ggctaaccaa
     5461 attatgatga aatatccttc ttttctgaga aatgctgaag tatttaagca ggcaatagga
     5521 gaagcagaat ggattagtgg atggaacaga aggaagaaag ttgtaaaaga accatgtgta
     5581 ataatctctc cagcaggtat gctagttgga ggttctgcag tattctatat gcaagaaatt
     5641 gcaaaaaatg ataagaatgg tatagctttg gtatcatatc aaggggaagg tactccgggt
     5701 aggacattac tagaaaaaag aattatgaca tttgacggaa aagtgagaaa atgcttagct
     5761 gatgtaaaac gtttcgaatt ttcaggacat aatagcagaa acgaattatt tgaaattctt
     5821 gaccgaatca agggtaatcc caaagtgctc acagttcatg gtgatggacc ttcgtgtaca
     5881 aaatttgcag aagagattgc agataaatat ggttatgatg caaaagctcc aaatatagga
     5941 gaagttgttg aagtttaata acatatatac catataaaga tggaggtttc atactgtagc
     6001 aaaaatatta gccagagaaa atatcagagt atttattgta ataattttac taattagttt
     6061 ttcttagcat caaggataat ttatccaaca taacaaaata gagcagaagt tgatttagaa
     6121 tagccctata tgcctatgca tgccgcaata aactggcatg gatgcattga agatattaag
     6181 tttaaacaaa gattgataga tagttaataa ttgcgcttat tgatatttgt cttctaatgc
     6241 taatcatatt gagcgtatct ttccataaaa cctccttctg gctgttcttt aacatcacga
     6301 ctagtaaatt caagaaatac gtcgtttaat gtagtacttg taaactctac tgattcaaca
     6361 ttgatatgtt ttaaaattat agggagatta cgactagcgt tatccactga taaaataaga
     6421 atttcctccc cattaatatt ttgattttca attttatgaa taaaagtaaa actctttaat
     6481 ttttcgatat cctggatatt gttcttcttt gacttcagtt ttataatatc attaccaatc
     6541 atctctttta gttttgatgg tgtgtccaat gcaattattt tgcccttgtc tataatacca
     6601 attctatcac agagaatatc tgcctcttcc atataatgag ttgtcaatat gatagtgaca
     6661 ttttcttctc ttaccaataa ttttatatat ttccacatta attctctgct cgttgggtca
     6721 agaccaagtg ttggctcgtc aaggaaaatc accttcggtt tgtgaataag acctcttgca
     6781 atctctagtc gtcttctcat tccaccagaa tattgcttga ctctgtcatc ctttctttcg
     6841 gttagaccta ctaattctag tacctcagaa attctttttt ccctgatatg acgtggcacg
     6901 ctataaagca aagaatgaag ttttagattt tcataacctg ttaatatgtc atcgctactc
     6961 ggtgcctgaa atacaatacc aatactggcc cttactttgg caggttcatt tacaatgtca
     7021 tagccattta cactagcagt gccaaaggtg ggtttaagaa gagttgcaag catatgtatt
     7081 gtagttgttt tacctgcacc atttggtcct aaaagaccaa aaacctcatt ttcatgaata
     7141 tctagactta aattattaac tgcaattata ttctgatatc ttttaacaag attccgtata
     7201 tttatcaaat gatcttatta catattttat actatatatt ttaagtttag aaagaacaat
     7261 aatatcataa cattttgtta actatcttta gatctaatgt tttaattaaa aatacagttt
     7321 atacttccgt aaatgataac agagacgcag tataaaaatt gtatgtagtc ttatgggaac
     7381 aaaaagtaag ggaaagatca ttggcctatc ttgaacattt ttgtcccaca gatggaacaa
     7441 atccctgtgg ttgcaggcct accatttttc attgtgacct ttttctcatc tttcattgac
     7501 ctttttgact tacatttaac gcaatatgct tccatagtag ttcaagcagt tggggcaaaa
     7561 taaaagaagc ggtgtataaa atgattgtca gaaagcctag agtggcttac ctaacacttg
     7621 atactcggtg aaagtaataa ttcatgctag aagattaaag aaattgaatg atgctactca
     7681 ctataaatag gattaaagac aaataaaaga taacattttg caatcactat agactagtga
     7741 gagatattta atatcggctt tactattact tctgaataat gtattattgt ccatatgctt
     7801 cagcaattag tattttagga tcaagcccaa ttattaaatt atcagacgag tttggtttta
     7861 tgtacgtcta aaagtaataa ccaagataga acaagcagaa aaatgttgtc ctaaaactaa
     7921 atatttactt aactgatatc tgctgacata gtacaataaa aaatgaggct ttgccaattg
     7981 ttaattgtta tatctaccag tctattctgt tagaatcatc ttttttaata attaattggt
     8041 tgccaattat attaaaacta agtgattcat tatgtttaaa attcagagtg cgtgctacat
     8101 ctatattaaa agttaaagta aaaacactct tacctatcat cgaagttact tttccactac
     8161 tagtaatgtt attttgctca ttagtattgt ttttcttctg ttgtgaatgc tgctgttttt
     8221 tatgatgttt catactctta acaatatctt tttttattac ttatttatct attctacttt
     8281 ttaatgtaaa taagaaaaat agttttttat taatttttga attatgctaa tgattagcag
     8341 gttattttga gtaatttaac aaacgatctt tgctttttag cagaggctga tgttataagc
     8401 tataacttaa tatttgattt tagaacattt tcagataagt tattctaaat tgttacttca
     8461 taatcattca ttaatgagat attctttctt atattatatt tataaaatta gacattattc
     8521 atatactaaa tgatttttta gtatatagta caaatatttt ttaacaaaaa actttaatat
     8581 gatatcgtca aaaacaagct gtactttatt gattgatacg tcggcaattg atcgattgct
     8641 taaagagttg catggatctt atttaaaaag taacaaatat gatgaaggag atctgctctt
     8701 ttacagaata acttataaac ttatcg
//
LOCUS       DATAAS010000200         3830 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1373309, whole genome shotgun sequence.
ACCESSION   DATAAS010000200 DATAAS010000000
VERSION     DATAAS010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3830)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3830)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3830
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1373309"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            41..853
                     /locus_tag="VHF08_03250"
     CDS             41..853
                     /locus_tag="VHF08_03250"
                     /inference="COORDINATES: protein motif:HMM:NF022932.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2067695.1"
                     /translation="MIISDKSRKAMESLGLTSYETKVYLCLLEIGSMRASDISKKSGV
                     PYSKIYEVLNSLEDKGWLETDSSRPQKFFPKSPLTALEAMRMRIENGIRDSESLIISE
                     LMPIYEKSGIREKPEIWVVRGIYNIAAKVSEIIQTCQHELLIALPQVAENIAKPVQPM
                     LRMLHEKGVRITVLASEETNTDTVRAISRIADVRLKNNMFGGGVIGDSKQVMILLGEG
                     RSDNTNVEPIAIWAEHTGLARFAKDYFHYLWADASNKEEQTSDHPRNLKRQM"
     gene            1740..2219
                     /locus_tag="VHF08_03255"
     CDS             1740..2219
                     /locus_tag="VHF08_03255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067696.1"
                     /translation="MVHIETTSSLESFRKFIIVSTCRSFIPESYLRDFEVFPEREEGP
                     GAIYIEAADKVTLKKVREMTFVNAKEILGIIYSSKSGNTQLKWRQTRKKSGRVQGDAS
                     ANALVNLVESGVLTQEWVTNYLKSAQPKEGNNTSSTTSSTSTSTSSSSSSVTNEKTV"
     gene            2251..3339
                     /locus_tag="VHF08_03260"
     CDS             2251..3339
                     /locus_tag="VHF08_03260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006402 - mRNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mRNA surveillance protein pelota"
                     /protein_id="HEX2067697.1"
                     /translation="MIIKEAKESSGKAYFVIPEDADDLLTLRRIIENGDYVFADTTRV
                     IKKVKEFARPDKGERIKVRVSVRVESISLDDMVDRLRITGIITNTDNELVPRGIHHSL
                     TVQVGDTITIDKNRKWNDVETNILKRSGNSTNFILVAIDAQEAAVAKISGTHLKIIPN
                     IYSGQSGKRYQHAAKNNPNIEIFFDDIAKTIQSIFSATEEGNNSTIIIFGPGETKRRF
                     YNLLVEKHKLEKGKVSLIDGVDVAGEDGIFVFLRSPAIKEAMSSSKLATVSSILDEIM
                     RLVHKGDAKFAMGMQEVSNAASIKAIEYLVFSDSIFKTIDENDVVKLLNLVESQGAKS
                     FAVDSSTDIGWRVSSLGGIVALLRYSIR"
     gene            complement(3391..>3830)
                     /gene="cutA"
                     /locus_tag="VHF08_03265"
     CDS             complement(3391..>3830)
                     /gene="cutA"
                     /locus_tag="VHF08_03265"
                     /inference="COORDINATES: protein motif:HMM:NF015077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0010038 - response to metal ion [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="divalent-cation tolerance protein CutA"
                     /protein_id="HEX2067698.1"
                     /translation="AILLPLSNSLVYIYYHIKLTFQTMIKQKKRQYGVLIISTYPDEE
                     SVVKVAKMLIANKKLCACVNFAKVRSLYSWKNKLEDQEEFIALFKTTNLTANKLKIEI
                     NNTHPYEVPEIVELKMSYVSKAYLSWMIGSTIIKTTTKSKIKN"
BASE COUNT         1345 a          592 c          686 g         1207 t
ORIGIN      
        1 atacttatat aacagttttt tttcattttc tatgtattaa atgatcataa gtgacaagtc
       61 aaggaaagca atggagagcc ttggcttgac aagctatgag acgaaggtat atctctgcct
      121 tctagagata ggttctatga gagcttctga tattagtaag aaatcaggtg ttccatattc
      181 taagatttat gaagttctaa acagtttaga ggataaaggt tggcttgaaa ctgatagctc
      241 aagacctcaa aaattctttc ccaaatcccc tctgactgca ctagaagcta tgcggatgcg
      301 cattgaaaac ggtatcaggg acagtgaaag tttgatcatt agcgaattaa tgccaattta
      361 cgaaaagagt ggcattagag aaaaaccaga aatttgggtt gtaagaggaa tttataatat
      421 tgctgcaaaa gtaagcgaga tcattcagac ctgtcaacac gagttgctta tagcactgcc
      481 ccaggttgcc gaaaatatag caaagccagt tcaaccaatg ctaaggatgt tgcatgaaaa
      541 aggagtaagg ataactgttc ttgcttcaga agaaaccaat acagatacag tacgtgccat
      601 atctagaatt gcagatgtca gattgaaaaa taacatgttt ggtggaggag taattggcga
      661 cagcaagcaa gtaatgatct tgttaggtga aggaagaagc gacaacacga atgtggagcc
      721 aattgccatc tgggcagagc acacagggct tgcccgcttt gcaaaagatt atttccatta
      781 tctatgggca gacgccagta ataaagaaga acaaactagc gatcatccaa ggaatttaaa
      841 gaggcaaatg taatgatgat gataagaaaa gtaataattc cttttgttta ctaattaaga
      901 taatattatt atcattatca tattcatttc aatgataaag caacataaat tcaccatata
      961 tatttgacaa ctcaaagtac tagatcttca tttttatgtt acatattcct aattaaattg
     1021 gacgaacaat gacgaaacta gccctactga gaatcgatga agtagatctt gagttaggag
     1081 tttgtccacc atttcaaggc tgataacgtt acttgttatt cttattctta ttttattagg
     1141 agattctgtc tctcttttat ttggcttata tctggactat gacatgacac tatcttcttg
     1201 agacgtttct catatatcct atatatccat ccctatccct ctataatgca cttgcaaata
     1261 tgatacaaaa tggcattatc atataattag aatgaagcat aaaattagtc tgtaaaaaat
     1321 gtattaaaag tgtaaacatc tgaataagca cttatttcaa aaataatatg gattttatat
     1381 ataatagtgg cggcacatca atatatcgct caaattaata tgatagaaaa cgggcgagcc
     1441 acgtttctct attagtgcgt aattaacaat caccattgtc gaaattatct aaacaataag
     1501 tagtttctcc ttgtatatag tataaggatt taatttaatc taattaatac agaaatcaac
     1561 tattataatt aaggaatata aataaaactt ttttaccttg aaatcatagt attaaaaatg
     1621 atactcattt tctacttaga tatacgttat agaaaaataa catacgtaca cctttattca
     1681 aattcatatc tatacaagtc ataaacttga taagtggcta aatagttttc atagtcacat
     1741 tggttcacat agaaactacc tcatcgcttg agagttttag aaagtttatc attgttagta
     1801 catgcagatc atttattcct gaaagttatc ttcgagattt cgaagtattt ccagagcgag
     1861 aagaaggtcc tggagcaatc tatattgaag cagccgataa agtgacattg aaaaaggtac
     1921 gtgaaatgac ctttgtaaat gctaaagaaa ttcttggaat aatatattca tcgaaaagtg
     1981 gcaatactca acttaaatgg agacagacca gaaaaaaatc aggtagagta caaggtgacg
     2041 cttcagccaa tgcactagta aatctagtag aatcaggagt attaacacag gaatgggtca
     2101 ctaattatct aaaatcggct caacctaaag aaggaaataa tacatcatct acaacttctt
     2161 caacatcaac ttcaacttct tcttcttctt cttctgtaac caatgaaaaa acagtgtaaa
     2221 ctatgatgag aaagagcaaa gtatgatcta atgattatta aagaagcaaa agaatcttct
     2281 ggcaaggctt attttgttat tccagaagat gcagatgacc ttcttacttt aagaaggata
     2341 atagaaaatg gagattacgt ctttgccgac actacaagag tcatcaaaaa agtgaaagaa
     2401 tttgctagac ctgataaagg agagagaatt aaagtgcgag tttcggttag agttgagagc
     2461 attagccttg atgacatggt agatagactg agaataactg gcataataac taacactgat
     2521 aatgagcttg tacctagagg aatacaccat tctctgacag tacaagtagg tgacacaatt
     2581 acaattgaca agaatagaaa atggaatgat gttgagacaa acattttgaa gagatcaggc
     2641 aatagcacaa atttcattct agttgcaatt gatgcacagg aagcggctgt agcgaagatc
     2701 tccggtaccc atttaaagat aattccaaat atctattcag gacagagcgg taagcgttat
     2761 cagcatgctg caaaaaacaa tcctaacata gaaattttct ttgatgatat tgccaaaaca
     2821 attcaaagta tattttcagc aacagaagaa gggaataata gtacaataat aatatttggt
     2881 cctggcgaaa ccaaacgtag gttttacaat ttacttgtcg agaagcacaa attagagaaa
     2941 ggtaaagtgt cattaataga tggtgtagac gtagctggag aagatgggat ttttgttttt
     3001 ctacgttctc ctgccatcaa ggaggcaatg agctcaagca aattagcaac tgtctcatct
     3061 atattagatg agataatgcg tcttgtacat aagggtgatg caaagtttgc tatgggaatg
     3121 caagaagtat ccaatgctgc atcaattaaa gctatagaat atcttgtatt ctctgattct
     3181 atttttaaaa ctatagatga aaatgatgta gtaaaacttt taaatttagt tgaaagtcaa
     3241 ggagcaaaaa gttttgcagt ggattcatct acggatatag gatggcgagt ttcatcgctg
     3301 ggtggcatag tagctttact tcgctattca attagatgag acgaacacac cattgttttc
     3361 caattataca ttctaacaat tctattatat ttaattttta attttgcttt ttgttgttgt
     3421 ttttattatt gttgatccta tcatccatga tagatatgcc tttgacacat agctcatttt
     3481 taattctact atttctggta cttcatacgg atgggtatta ttaatttcga tctttagttt
     3541 atttgcagtt aaatttgttg ttttgaatag tgcaataaat tcctcttgat cttcaagttt
     3601 atttttccac gagtacaaag atcttacctt tgcaaaattt acgcatgcac aaagtttttt
     3661 gttagcaatc agcattttag ccactttgac aacagattct tcatctggat aagttgatat
     3721 aattaataca ccatattgtc tctttttttg tttaatcatt gtttgaaaag ttaatttgat
     3781 gtgataatat atatagacta gactatttga taacggtagt agtattgcta
//
LOCUS       DATAAS010000201         2814 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2918540, whole genome shotgun sequence.
ACCESSION   DATAAS010000201 DATAAS010000000
VERSION     DATAAS010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2814)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2814)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2814
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2918540"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..897)
                     /locus_tag="VHF08_03270"
     CDS             complement(<1..897)
                     /locus_tag="VHF08_03270"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HEX2067699.1"
                     /translation="MERLTSWLLKEPVGVMPILDKWILFFLKIIYLGIRFSIKIALGK
                     KRRDRLFVKRGIHFNDSFGPSFYFMSFLYKFIKFSRLGNPVSLKISVRKYNYKVLCPI
                     KKEEVINMTIREDDIIEHFTPKQGDIVVDIGANIGRYTIIGSKRVGTQGKVVAIEAHP
                     GNFEMLNRNIKLNQLTNVIPLNYAAYSKETKIRLYVPGEESGYTVYNTIMSNRAGTEE
                     NFVEVNANTLDYLLQLNQIRQEQVKWIKIDVEGAELDVLKGSTNVLSKSKDIALLIEV
                     HGPANYRPVVEFLSLYDFKIEFE"
     gene            1751..2566
                     /locus_tag="VHF08_03275"
     CDS             1751..2566
                     /locus_tag="VHF08_03275"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEX2067700.1"
                     /translation="MNKLNAQGLRVDVIVTSPPYNINKEYGLYKDDKKRNEYLDWLAD
                     IAKSSQSILKEDGSFFLNLGRTPSDPILPFEVVNRFLNSNYKLQNTIHWIKSVSFEKE
                     DMGKNNGFHNDCVSIGHFKPIVSERFITDLHEYIFHFTKKGNVKLDKLAIGVPYQDKT
                     NIGRWKSATQDKRDRGNVWFIPYPTIQHERPHPAVFPEKLPYLCIKVHGIKSNILVYD
                     PFMGIGTTALACLRLGVSYIGTEIDDEYIKVARENITVETKRVIIRKMKDKRG"
BASE COUNT          983 a          452 c          418 g          961 t
ORIGIN      
        1 ttcaaattct attttgaaat catataagct aagaaattca actactggtc tataattagc
       61 tggtccatgc acctcaatta aaagcgctat atccttgctt ttagataata cattagtaga
      121 tccttttaac acatcaagct cagcaccttc tacatcaatt ttgatccact ttacttgttc
      181 ttgtcttatt tgatttaatt gtaataaata atccaaagtg ttagcattta cttctacaaa
      241 attttcttca gttcctgccc tattggacat gatggtgtta tatacagtat aacctgattc
      301 ttcacctggt acatagagcc ttatttttgt ctctttagaa tatgctgcat aattcaaagg
      361 tataacatta gttagttgat ttagtttgat attgcgattt aacatttcaa aattgccagg
      421 atgagcctca atagcaacta cttttccttg tgtaccaact cgctttgaac ctataattgt
      481 atacctgcct atatttgcac caatatctac aactatatct ccttgcttag gagtaaaatg
      541 ttctattata tcatcttcac gaatcgtcat gtttatgact tcttcttttt taattggaca
      601 aagaactttg taattgtatt ttcgaacact gatttttaat gatacaggat ttcctagtct
      661 cgagaacttg ataaatttat acaagaaact catgaagtaa aatgatggac caaaagaatc
      721 attaaaatga attcctcgtt taacaaatag tctatctctt cttttcttgc ctaaagctat
      781 tttgattgaa aatcttatac ccaaataaat aatctttaaa aaaaataata tccatttatc
      841 taatatgggc attactccta ctggttcttt tagtaaccaa gaagtaagtc tttccatatt
      901 gtgtcatgtt caattgcata caaacttaaa cctttttaat tcattatcga ctttttgaat
      961 gatttgcagg ccacttctag ataaccctca atcatgttct tattataaca taaactgatt
     1021 gattaattgg taaagaacaa atttcagaat atggataatt agaaatagta gcgagccaac
     1081 ttgctgccgc caagttttta ttaataatat aataccccat ttttttgctt aactgccgta
     1141 aggaatagga actcaaatat aatctccaat ttctctaaat tctggagaca tagggtctgc
     1201 ttttatatat atatatgctc tttcatcgcc tgctctgtag cgtttcccta atttcatctt
     1261 ctatctcttc gtacataacg tagtgaagtt aatcctgcgt catgacatga taattcttcc
     1321 tagttattac ataaagtata tttcatgtaa ataatacaat tcaacatcac tgaaagttct
     1381 attgagacac ctttgcctaa agaaattatt gctaatagct ttggtattaa ggttacaaat
     1441 tcattctaat aattctatca ataactgatg cttcatttat tttcactttg tttctgccta
     1501 aaacacagaa aatgctatta taacaatcct cagtagtaac aaaagaaaga ggaatataaa
     1561 aaattaataa tagtttcaaa cagaaaactt aattaaacaa atgaggtaag ggaatgatgt
     1621 tcttttggta aatttagtga atataataat atacttaaag ttttagaaga acatcttaat
     1681 aattggtttc attggaggta ttagggtgat agagctcaat aacatctacc aagaagattg
     1741 tctaaccttc atgaacaaac taaatgctca aggattaaga gtagatgtta ttgtaacctc
     1801 gccaccatat aatataaaca aggaatatgg attatacaag gatgataaaa aaagaaatga
     1861 atatttggat tggcttgctg atattgccaa aagttcccaa tctatcttaa aggaagatgg
     1921 ttcatttttt cttaacctag gcagaacacc atccgatccc atactacctt ttgaagtagt
     1981 taatagattc ttgaattcaa attacaaatt acaaaataca attcattgga ttaagtcagt
     2041 ctctttcgaa aaggaagata tgggtaaaaa taatggattt cataatgatt gtgtatctat
     2101 aggtcacttt aaacccatag taagcgaacg ctttataact gatcttcatg agtatatatt
     2161 tcattttaca aaaaaaggta atgtaaaatt ggacaaacta gcaatcggtg taccttatca
     2221 agataaaact aatattggaa gatggaaatc tgcaacacaa gataaacgag atagaggtaa
     2281 cgtttggttc attccttatc ctactatcca acatgagcgt cctcatccag ctgtgttccc
     2341 tgaaaagcta ccatatcttt gtataaaggt acatggaata aaatcgaata tacttgttta
     2401 tgacccattc atgggaatag gtaccactgc cttggcatgt cttcgtcttg gtgtaagcta
     2461 cataggaaca gagatagatg atgaatatat caaagtggca agagaaaata taactgtgga
     2521 aactaaaaga gtaatcataa gaaagatgaa agacaagaga ggttagtgat agaactgcag
     2581 gaagatgaag atatattgct tggagacaag agacctgaaa ttacctaaaa gcataagcgg
     2641 tttatcgttt ttataacata ctttacaata ttgatagaag aaaaggttgc ctgcacattt
     2701 tatgttatta taattaccat ctgtttaaat gcatataaag atgcattaaa ttttcagtga
     2761 attagtgtcc ttttaagcga tatagtatgt ataacaaagt tttcaaagga atat
//
LOCUS       DATAAS010000202         1669 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_222322, whole genome shotgun sequence.
ACCESSION   DATAAS010000202 DATAAS010000000
VERSION     DATAAS010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1669)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1669)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1669
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_222322"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(322..1272)
                     /locus_tag="VHF08_03280"
     CDS             complement(322..1272)
                     /locus_tag="VHF08_03280"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX2067701.1"
                     /translation="MDLWYSKKSPEFEIKKSKSILHPFIVKEYEGLTVNPYQGCHHRC
                     GYCYATYEWSPEFYDKIYAKSNASEILENQLKSWKSQSIDPIMISSATDPYQPAELKY
                     GITRKCIQILQKYNAPYYVFTKSSIIKRDLELHKGYKSNCFIVWSITTCDEKVRRVIE
                     PGTPPASSMFGVIKEFTDSGICCGVNIDPIIPLITDSQDQIEKILDCCYKSGIQYVFG
                     AILRLRFDIWQRMKTILKLLDIANGINEFKRIFRFEEPINQGHNITAEKFYSKVILND
                     LEREVVKRNMIFDFPDLIGRRYLKRNIVDSTNQLTLMNYI"
BASE COUNT          506 a          278 c          236 g          649 t
ORIGIN      
        1 gtttcttatt ggcgttccag agaagtataa gatattttat gttcataaat taggatctaa
       61 atatatattt attattttct attcatctgt ttttttgtaa cgcagtataa aatagcccct
      121 atcttgaaaa gaacttattg tcattatcga ttattttatc tcttgcttct tttctaatac
      181 cggcgctata ttgcgatctt agtcatattt atagaaatgt ttaatgattc aatgcttcaa
      241 tcagatttta tgtctcactc aagtgtcatt actcgcatat tctttttctg ttagaaataa
      301 aagtattatt gaaaagaggt tttatatata attcattagt gtaagttggt ttgtgctatc
      361 aactatattt cttttaagat atctccttcc aatcagatct ggaaagtcaa atatcatatt
      421 tctcttcact acttcacgtt ctaaatcatt cagaattacc tttgaataga atttctcggc
      481 tgtaatattg tggccttgat tgattggttc ttcaaatcta aatattcgtt tgaattcatt
      541 gattccattt gcaatatcaa gtaattttag aatggttttc attctttgcc aaatatcgaa
      601 tctcaatctc aatattgcac caaatacata ttgtatccct gacttgtagc aacaatcgag
      661 tattttttcg atttgatctt gtgaatctgt gatgagaggt ataataggat caatattcac
      721 accacagcag ataccagaat ctgtaaactc ttttattact ccaaacatgg aagacgctgg
      781 cggcgtccca ggttcaatta ctcgtctgac tttttcgtcg catgttgtta tggaccaaac
      841 aataaaacaa ttactcttat atcctttatg aagctctaaa tctcttttta ttatactgga
      901 tttcgtaaat acatagtatg gagcattata cttctgtaat atctgtatac atttccttgt
      961 aatgccatat tttagctctg ctggttggta tgggtctgta gcagaagata tcattatagg
     1021 atcgatactt tgcgatttcc acgattttaa ttggttctca agtatttcag atgcattact
     1081 tttggcatat attttatcat aaaattctgg tgaccattca taagtcgcat agcaataccc
     1141 gcatctgtga tggcatcctt ggtatggatt aacagtaaga ccttcatatt cttttacaat
     1201 gaaggggtga agtatcgact tgctcttctt tatctcaaat tctggtgatt ttttgctata
     1261 ccataaatcc attgtataag ttcattataa atcttgatct cattctaata agatccgtaa
     1321 taccataaga agagggagtc tatattatgt acactgctta ggaataccca caagtccaaa
     1381 ctcatgtttt tagatcatcg tatatattgt aagttatttt ttattatctt atgctatttc
     1441 ctaagatcat tgcataacat atagattatt tctcgtgtcg caattaacac agcaaatatt
     1501 caattaacaa tagttagtaa tataaaaaaa taactagatt ttggactatg aatcattagt
     1561 tctaattaat attggttatc tcatcttgat actatcgagc gcaaaacact tcttgtcata
     1621 atatgtaatt tctatctttt ccaccaaata aatccagata attttgata
//
LOCUS       DATAAS010000203         3902 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_770067, whole genome shotgun sequence.
ACCESSION   DATAAS010000203 DATAAS010000000
VERSION     DATAAS010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3902)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3902)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3902
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_770067"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..756)
                     /locus_tag="VHF08_03285"
     CDS             complement(<1..756)
                     /locus_tag="VHF08_03285"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEX2067702.1"
                     /translation="MVEKARINNAKPINIQVLRLSLITIVSVVIFEFFAGVIANSLSL
                     ITDSAHALLDAGVTGILLIAARLALKPRDIEHTYGHGKIETIGGFIGGVALFVLAIFF
                     IYEALVRITITSAGSLLVKPGFLGFAAVLYTLSIDSFRLGLLQRATKQTESITLKADY
                     YHAFTDLLSTGIVFLGLWLVTIGFNHGDSIAAIVLGGFLAYLSFTFSYRSAMDLTDAI
                     SPKLVLKVKEAVYNTNGVLECKDIKMRRVGRETF"
     gene            complement(855..1637)
                     /locus_tag="VHF08_03290"
     CDS             complement(855..1637)
                     /locus_tag="VHF08_03290"
                     /inference="COORDINATES: protein motif:HMM:NF013341.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIO1 family regulatory kinase/ATPase"
                     /protein_id="HEX2067703.1"
                     /translation="MQSTSLSPQIPVFSDRISINSSKLSTIISYPHFSEIEYSNRLKE
                     MYSLGINSIFSVGRTKIGSMSIAGKGCVSLVVKAEIKNTICALKIRRTDANRKTMDRE
                     VTLHRIANSVGVGPGIIDYSENFVIMQFIDGLSIINWIYHQNINQEKVRNVIISTMEQ
                     CYKLDRAHLDHGELSCLDHHIIVSQGCAANIIDFESSSTKRKTCNVTAAAQSLFLSGP
                     VSKKVNELLHLPEREKIIKALRSYKQDQSRYNFDNIISISVG"
     gene            complement(1591..2988)
                     /gene="cca"
                     /locus_tag="VHF08_03295"
     CDS             complement(1591..2988)
                     /gene="cca"
                     /locus_tag="VHF08_03295"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: protein motif:HMM:TIGR03671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEX2067704.1"
                     /translation="MSDINSVISKALERCQPSPKEVQYLTEIADEAMSLLRQYNSPMI
                     TDVVLGGSFAKGTWLKRENIRDNSVKSDECTDIDIFVKIDVSLQDEELDELAKKIGKQ
                     SLSKYNPRLRYSSHPYVEAYVKGIRVNVVPCYNVEKGKWKSAADRSPFHTEYIRNNLD
                     DEKKNQVRLLKKFLKSIGVYGAEIATGGFSGYVTEILILKYGSFVSVLTAISNIKEDK
                     NVISIDKFDEDVLKIFQSPLIIIDPIDSRRNLGTAISAESVGKAVLAARAFLEKPSLN
                     FFREKKERYNETFKEIYSNLLIVEFTYGQRSPDIIWGQIKRTLNAISKQLCIANFTVI
                     RSIGDTDENGHATFVFLLEAITLPPYMTRTGPHIFRTRDTASFISENIKKSLLMWIDN
                     EMKVKSLVERKTINAKEYVKLILANKKNVGVTKGLIKDIQETLQIYTGDEREINGLVK
                     NAIYKLVTTDSRIFR"
     gene            complement(2981..3547)
                     /gene="thpR"
                     /locus_tag="VHF08_03300"
     CDS             complement(2981..3547)
                     /gene="thpR"
                     /locus_tag="VHF08_03300"
                     /inference="COORDINATES: protein motif:HMM:TIGR02258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008664 - 2'-5'-RNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0008033 - tRNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 2',3'-cyclic phosphodiesterase"
                     /protein_id="HEX2067705.1"
                     /translation="MNTNRMFIAVDVSNKENIEKLQHRLQISAGWNTLMLKPVSKESF
                     HFTLIFLGEVAINTVEKIKTNLSEIQFEPIKITYTGIGGFPNSNSARVIWMGVDAEGG
                     QKLVGLAEKVRSKMEDMNFRPDKPFTPHMTLFRVKTGRLKITTKLLSEYNGMTFGSEV
                     INKVHLKRSDLTSTGPIYTDIFTVNACE"
BASE COUNT         1178 a          751 c          585 g         1388 t
ORIGIN      
        1 gaaagtttct cttccaactc gacgcatttt aatatcttta cattctaaaa caccattggt
       61 gttatagaca gcttccttta ctttcaatac tagctttggt gatattgcgt ctgtcagatc
      121 cattgcggat cgataggaaa atgtaaaact taggtaagca aggaatcccc caagaactat
      181 ggctgcaata gaatcaccat gattaaatcc aattgtaaca agccacaggc ctaagaatac
      241 aatccctgta gataaaaggt ctgtaaatgc atgataatag tcagccttca aagttatgct
      301 ctcggtctgt tttgtcgcac gttgtaggag tcctaatcta aaactatcaa ttgacaaggt
      361 atacaagaca gcggcgaatc ctaaaaagcc tggtttaaca agtaaactac cagctgaagt
      421 gattgttatt cttactagtg cctcatagat aaaaaatatt gctaatacga ataatgccac
      481 acctccaata aaaccgccga tagtttctat ttttccatga ccgtacgtat gttcaatatc
      541 tctcggtttt agtgctaacc tggctgcaat aagtaaaatt ccagtaactc cagcatcaag
      601 tagtgcatga gcactgtcgg taattaacga taggctattt gcaataactc ctgcaaaaaa
      661 ttcaaaaata acgactgaaa ctatagtaat aagcgatagt ctcaggactt gaatattgat
      721 aggtttagca ttgtttatcc ttgccttctc taccactgct agcaatgaga catgtgaaat
      781 tgatatttag aattatcttt tttcatactt tattacgatg actatgttaa aacccaaact
      841 atattatacg atagctatcc aactgagata ctgatgatat tatcaaaatt atatctagat
      901 tgatcctgtt tgtaactcct taatgctttg attatttttt ccctttctgg cagatgtaat
      961 agttcattca ctttttttga aactggtcca cttagaaata gtgactgagc agccgctgtt
     1021 acattgcatg tcttcctttt tgtacttgag ctttcaaagt ctataatgtt ggcagcacac
     1081 ccttgtgata ctattatatg atgatctagg cagcttaatt caccgtgatc gagatgtgct
     1141 ctatctaatt tatagcattg ttccattgta ctgataatga cattgcgaac cttttcttgg
     1201 ttgatattct gatgatatat ccagttaatt atgctcaaac catcaatgaa ttgcattatc
     1261 acaaagtttt ctgaatagtc tattatacca ggaccaacac caactgaatt tgctattcga
     1321 tgtaaagtca cttctctgtc catcgttttc ctgtttgcat cagttcttct tatcttaaga
     1381 gcacaaattg tatttttgat ctcagctttt acaactaggc ttacacaacc ttttcctgca
     1441 atagacatac ttccaatttt tgttcgacca acagagaata tggaattgat tccaagtgaa
     1501 tacatttcct tcaaacgatt agaatattct atttcactaa aatgtggata tgaaataata
     1561 gtggaaagtt ttgaggaatt tatactaatt ctatctgaaa atacgggaat ctgtggtgac
     1621 aagcttgtag attgcattct ttactaatcc gtttatttct ctctcatctc ctgtataaat
     1681 ttgaagtgtc tcttgtatgt cttttatcaa tcccttagta acccctacat tttttttgtt
     1741 agccaaaatt aattttacat actctttcgc atttattgtt tttctctcga ccaaactttt
     1801 aaccttcatt tcattatcta tccacatcag cagagatttt ttgatattct ctgagatgaa
     1861 actggcagta tcccttgtcc ggaaaatatg agggccagtt cttgtcatat atgggggcag
     1921 tgttattgct tctaatagaa atacaaatgt ggcatgtcca ttttcatctg tatcaccaat
     1981 gctccgaatt acggtaaaat tagcaataca tagttgtttt gaaattgcat taagagttct
     2041 ctttatctgt ccccaaataa tgtctgggct gcgctggcca taagtgaatt cgactataag
     2101 taaatttgaa tatatctcct taaaagtctc gttgtatctt tctttctttt ctctgaaaaa
     2161 gttcaatgat ggcttttcta aaaatgccct agctgcaagt actgccttgc caacactctc
     2221 tgcagaaatt gccgtcccta aatttcttct agagtcaatt ggatcgatta taataagtgg
     2281 gctttggaaa atctttaaga catcttcatc aaatttatca atagagatca cgtttttgtc
     2341 ttctttaata tttgaaattg cagttaatac ggatacaaat gaaccatatt ttaaaatcaa
     2401 aatctccgta acataaccac taaaacctcc agtagcgatt tcagctccat agactccaat
     2461 tgattttaga aacttcttca acagtcttac ttgatttttc ttttcatcat ctaagttatt
     2521 cctgatatat tctgtatgaa acggtgatct atcggcagca cttttccatt tacctttctc
     2581 tacattatag cagggtacaa cattaactct aattcctttg acatatgctt caacatatgg
     2641 atgactagaa taacgtagac gaggattata cttactcaga gactgtttcc ctatcttctt
     2701 agccagctca tctaattctt catcttgaag tgaaacatca attttcacga agatatctat
     2761 atcagtacat tcatcagatt ttacactatt atcgcgaata ttttctcttt ttaaccatgt
     2821 gcccttagca aaagaccccc ccaaaactac atctgttatc ataggagagt tgtactgtct
     2881 taaaaggctc atcgcctcat ctgcaatttc tgttaaatat tgtacttcct tgggtgatgg
     2941 ttggcagcgc tctaatgctt tagaaataac actgtttata tcactcacaa gcattcaccg
     3001 taaatatatc tgtgtaaatt ggacctgtag aagtcagatc acttcgcttc agatgaactt
     3061 tattaataac ctcagaaccg aaggtcatac cattatactc tgacaacaat ttagttgtta
     3121 tctttaatct tcctgtcttt acacgaaaaa gagtcatatg cggtgtgaat ggtttgtcag
     3181 gcctgaaatt catatcttcc atttttgatc ttactttttc agcaagacca acaagttttt
     3241 gacctccttc tgcatccacc cccatccaga tcactctagc agaatttgaa tttggaaaac
     3301 cgccaatacc ggtataagta attttaattg gttcaaactg tatttctgat aagttagtct
     3361 tgatcttctc aacagtattg atagcaactt caccaagaaa aattaatgtg aaatgaaaac
     3421 tctcttttga tactggcttt aacattagtg tattccatcc tgcagagatt tgtaatctgt
     3481 gttgtaattt ttcgatattt tctttgtttg atacatctac cgcaatgaac attcgattag
     3541 tattcaatat cctacctatc ctataatcat ggatttgaat ttatttaaat gcgaattaat
     3601 acttttaata caacaaaata attttatgca ttggtcgtat catgattcag tttcacaaaa
     3661 gatttctaac gctatattag attctacatt tcgaataaat ttagcatgaa tgttcttcgt
     3721 cttaatataa ttcaatcggt atatctataa tgacttgact ttgattttgg gacataactt
     3781 cgaaagattt tttcttgtag ccattacggc atctaacgcg tattatcaac ctttgagatt
     3841 ttactatatc tagatatcta tatgttaaat gatttgttca tattgtatga ggattaagca
     3901 aa
//
LOCUS       DATAAS010000204         1511 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_223305, whole genome shotgun sequence.
ACCESSION   DATAAS010000204 DATAAS010000000
VERSION     DATAAS010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1511
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_223305"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(111..1016)
                     /locus_tag="VHF08_03305"
     CDS             complement(111..1016)
                     /locus_tag="VHF08_03305"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEX2067706.1"
                     /translation="MKKIGIIGSGVVGSATGKGFHRLGHDVIFYDIAKQRLLTLKEEG
                     YQIASSVKDIIDKTDISFVCVNTPNNSSGEQDLSQLMSVLYDITNSLRRIDRIHEQQQ
                     QHPHLIVFRSTMLPETMRKVVINYLQTNCPSSRIGRDYDVCYNPEFLRQNTAFDDFFR
                     PDRVVIGEDRKGASQPLKEIYQQLTENIIVTSFEAAEMIKYTSNCFLSLKISFFNEIG
                     LVCKQMGIDDKAVSLGVSMDKRIGNYGTQFGKPFEGACLPKDTEALAGFIRDLKLNPD
                     LLQVALDINRKMEELTSSKPPVQRK"
     gene            1247..>1511
                     /locus_tag="VHF08_03310"
     CDS             1247..>1511
                     /locus_tag="VHF08_03310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067707.1"
                     /translation="MSLGISFSSLILLPTIALALIMISVISLSLFLPYWFDSYSLGND
                     IFSLATSFTDEVGSIILRGVQTFSLYIPLGIIGIWRWGVWIFKK"
BASE COUNT          453 a          268 c          255 g          535 t
ORIGIN      
        1 ctagggatct tatttgttat ttttagaaaa cgcaagagca taaatcacac ctcaaaacat
       61 aacataggtt agcaaagtaa aaaaattgag cagctaaatg atagcagctc ttattttcgt
      121 tggacaggcg gttttgagga cgttagttcc tccatctttc ggttaatgtc aagggctacc
      181 tgaagcaaat ctggatttaa tttcaaatct ctaataaaac cggctagtgc ctcagtatct
      241 tttggtaaac atgctccttc aaatggtttg ccgaattgtg ttccatagtt tcctatcctc
      301 ttatccatgg aaacacccaa gctgacagct ttatcatcaa ttcccatttg cttacataca
      361 agtccgattt cgttaaagaa cgatattttg agtgaaagga agcaattaga agtatacttt
      421 atcatttcag cagcttcaaa actagttacg atgatattct cagttaattg ctggtagatc
      481 tccttgagag gttgagacgc ccctttacgg tcttcgccta tgactactct gtctggtcta
      541 aagaaatcgt caaaagcggt attctgcctc aagaattctg gattataaca tacatcataa
      601 tctcttccaa tccttgatga tggacaattt gtttgtaaat aattaatgac cacctttctc
      661 atggtttcag gaagcattgt acttctaaaa acaataagat gaggatgttg ctgctgctgc
      721 tcatgtattc tatctatcct cctaagagaa tttgttatgt catagagaac agacatgagt
      781 tgtgataaat cctgctcgcc actactatta ttaggagtat taacacaaac aaatgaaatg
      841 tctgttttat caataatgtc tttaacgctt gatgcaattt gatagccttc ttcctttaga
      901 gtaagtagtc tttgtttagc gatatcataa aatattacat catgaccaag tctatgaaag
      961 cccttacctg ttgcacttcc aacaacaccg gatccgatga ttccaatttt tttcataatc
     1021 atatttttta gtcattggcc atctcaggcc ttcttatcga aggcaaaaat gatatatata
     1081 ttatccgata tctttttatt ttataaggtt cctatttatc tcagcagaat atcttttaga
     1141 tgtatgataa agaagtattt agggctgaat ttttccatta gataaatact aggttaactc
     1201 ttcataggca atggatatat aaagaagaaa tgaagaaatt tggttaatga gtcttggaat
     1261 aagtttctct tctctaatac ttcttccaac gattgcattg gcacttatca tgatatctgt
     1321 tatttcctta tccttatttc ttccctattg gtttgattct tattcacttg gaaatgatat
     1381 ttttagtttg gctacatcat ttacggatga agtaggtagt ataattctta gaggtgttca
     1441 aacattttca ctctatatac ctttaggaat aattggcatt tggcgatggg gggtatggat
     1501 ttttaagaaa t
//
LOCUS       DATAAS010000205         1938 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2921695, whole genome shotgun sequence.
ACCESSION   DATAAS010000205 DATAAS010000000
VERSION     DATAAS010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1938)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1938)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1938
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2921695"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(658..1530)
                     /locus_tag="VHF08_03315"
     CDS             complement(658..1530)
                     /locus_tag="VHF08_03315"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HEX2067708.1"
                     /translation="MVSFSHSNTDKISEADIVIIGVPDESKSHAKRKGTSKGPDILRL
                     ASNESDFFERNGKIIPILPMHGRLDNKHILDYGNVMREDLYQLIFDLVSNKKIPIVIG
                     GDHSITTITLQAIGDLYGKIELLYFDAHPDFVSSARNYYGSVLTDSLGSIDFEKSMLI
                     GTRAAEAEELENAYKVGLEVITPLDIQELGILKISDKIRSKNYNGKKFISIDLDCLDP
                     AFAPGVSLPSPCGLSSIDLIYLVKLAVSTGIIGIDIVELSPDFDINNITAYLAARILL
                     ESIASVKINHSNKT"
BASE COUNT          697 a          322 c          250 g          669 t
ORIGIN      
        1 gaggataaaa attaatagat aaagaattat tcataatttc tatacctaca ctaagaaatt
       61 acagttttcc atctataaaa taccttatta ctatttagta aaaaagcaaa tgatagcgat
      121 acatgattac tactacaaaa tcccatggtt gccattaaat cacgcaacaa taaacataat
      181 aagatagtaa cataaaagca gaagacataa ctaatggctc tattaatcta acaaatcgct
      241 tttttattgt actagtcaat taacagattc aaccagctcc taacatgctt attttgcatt
      301 tattatagta atggaaataa ttctcatcta aatattcaga tttatctttg tgaattattc
      361 attctactat gatttctctt ataataaaat gaatgatatt taatctcaaa atcttggaga
      421 cttgcgaatg acaaatagcg tgatatctat tcatgaattc taagaattat cttttatctg
      481 caggtattcc gctaatgctt gctaactact ataaaaattc aaaagcaatc ttttacctat
      541 ctgcgtttag ttattttaaa ttcgatattt tcatctttta tctgctgaca cattagcttt
      601 atacaagttt gaataattgt aataacaaca ttgctcatta ttgatcctta gtatggatca
      661 agtcttgttg ctatgattta tctttacaga tgcaatagac tctaatagaa ttcttgctgc
      721 caaatatgct gtaatattat ttatgtcaaa atctggagaa agctctacaa tatcaattcc
      781 aatgatgcct gtgcttacag ctaatttaac aagatagata agatctatgc tggataaacc
      841 acaaggagat ggcaaagaaa ctccaggagc aaaagcagga tcaagacagt caagatcaat
      901 agaaataaat tttttaccat tataattttt agatctgatt ttatcagaaa tctttaaaat
      961 acctaattct tgtatatcta aaggggtaat tacttctaat ccaaccttat atgcattttc
     1021 caattcttca gcctctgcag cccttgttcc tattaacata ctcttttcaa aatctataga
     1081 tcctaaagaa tcagttaata cagatccata gtaatttctg gctgaagaaa caaagtctgg
     1141 atgcgcatca aaataaagca actcaatttt gccatataaa tctccaattg cttgtaaagt
     1201 tatggttgta atagaatggt caccacctat aacaataggt atttttttat ttgaaactaa
     1261 atcaaagatt aactgataaa gatcctctct cataacattt ccgtaatcta atatatgctt
     1321 gttatcaagc ctgccatgca ttggaaggat aggaataatt ttaccatttc tttcaaaaaa
     1381 atctgactca tttgaggcaa gacggagaat atcaggtcct ttacttgtgc cttttcgttt
     1441 tgcatgagat tttgattcat ctggtacgcc tattataact atgtcagctt cagagatttt
     1501 atctgtattt gagtgagaaa aagaaaccat attactatgc aagtcaatca acgattccaa
     1561 cttataaaat tgcttcacca actttgtgat gcaaacaaaa tcatagatgg caactattat
     1621 aatgtagtat gaatcaatat ctgaaataat aataaatcta aagaatatca aaatcctaaa
     1681 ttcaattatc aactattaaa tacaagaata taataaagcg agcatagtta atgtaaatca
     1741 tgatatctat tctaggtata ggtatattct acatcttttt ctaaatacct tatctggagg
     1801 tatttttata ggcatgtcca aagttcatat gattgacaat ctcttcccaa gtgctctact
     1861 aggcactaaa aggcatcgca tccatgccta tttattatat attttttata actgattata
     1921 cgtagtaatc aacaatct
//
LOCUS       DATAAS010000206         1985 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1379009, whole genome shotgun sequence.
ACCESSION   DATAAS010000206 DATAAS010000000
VERSION     DATAAS010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1985
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1379009"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..427)
                     /locus_tag="VHF08_03320"
     CDS             complement(<1..427)
                     /locus_tag="VHF08_03320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEX2067709.1"
                     /translation="MSASKKPHMNLVVVGHVDNGKSTTVGHLMVDLGVIDQRTIDAFA
                     KESEATGKGDTFKYAWVLDSIKDERDRGITIDLAFQKFETSKFFYTLIDAPGHRDFIK
                     NMITGASEADAAILVVSVKPGETEAAVEPGGQAREHAFLA"
     gene            complement(640..1107)
                     /locus_tag="VHF08_03325"
     CDS             complement(640..1107)
                     /locus_tag="VHF08_03325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067710.1"
                     /translation="MKKNDQKSKQRKIKSACGAFALSSFVLLLLSSIDPVRVFSQVEG
                     QDTEEIQREPVKIIEDIQVMLNKILEEYKAQNYMGAEELATVAYLENYEYVEAPLAEK
                     NEELMEETEIMLREDLSTAIEEKAPVEQVQQLMNNINGNLDQAKRLLLETSAG"
     gene            complement(1800..>1985)
                     /locus_tag="VHF08_03330"
     CDS             complement(1800..>1985)
                     /locus_tag="VHF08_03330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067711.1"
                     /translation="FPTSNILSADNQVSTLSSPSLHRSKKRTDPLDSYMDECYRELAR
                     RTVDQKFSTRYYEQNHL"
BASE COUNT          607 a          374 c          318 g          686 t
ORIGIN      
        1 tagcaaggaa tgcatgttct cttgcctgac caccaggttc aactgcagct tctgtttcac
       61 ctggcttaac tgaaacaaca agaatggcgg catctgcttc agatgcgcca gtaatcatat
      121 ttttgatgaa gtctctatga ccaggggcgt cgattaaagt ataaaagaac tttgaagttt
      181 cgaacttttg aaaagctaga tcgatagtaa ttcctctatc ccgttcgtcc ttaatactgt
      241 ccaacaccca tgcgtactta aaagtgtctc cctttcctgt tgcttctgat tccttagcaa
      301 acgcatcaat agttctttgg tcaataacac ccaaatccac cattaaatga cctaccgtag
      361 ttgatttacc attatcgaca tgaccgacaa ccaccaagtt catgtgtggt tttttacttg
      421 cactcataac gggtaaaaca ctcacagggc tttatttgta tttcgataag aattatgtta
      481 ttgcaagaat tttgatgaga agacattaca caaaagtgat cctctcaatc ataacaactt
      541 caaacaaagc cagaaatata ttctggaacg actcgattac atattaaaat gtgccatagt
      601 cataagaaca tatgtgtatg ggaacctctt actactgttt tatccagctg atgtttcaag
      661 taatagccgc tttgcttgat ctaaattacc gtttatatta ttcataagct gttgaacttg
      721 ttctactggt gctttctctt caatagcagt gctgaggtct tctctaagca taatttcggt
      781 ttcttccatt agttcttcgt ttttctctgc tagaggcgcc tctacatatt cataattctc
      841 taggtatgcc acagttgcaa gctcttctgc tcccatgtaa ttttgtgctt tgtattcttc
      901 taagatttta tttaacatta cttgaatatc ttcaattatc ttgacaggtt ctctttgaat
      961 ttcttcggta tcttgccctt ctacttggga gaaaactctg acagggtcaa ttgatgacag
     1021 tagcaataga acaaacgacg aaagtgcaaa tgctccacag gctgacttta tctttctttg
     1081 ttttgatttt tggtcgttct ttttcatact tgggtatacc taacttagat gtatttattc
     1141 tacttggcac ttctcattat tgagaattca tgagcaagtt tttcaacagc taaaagatgg
     1201 atttgtttaa ctcctagtgt atatataaga agaattccaa tttatcaaag gaaatcttta
     1261 acatatttct aaaagaatga cattgcaata acattattta taatcatagt ctaataggtt
     1321 gctcttcaaa atagataatt tagattctct attaacagag ttagtgtaaa acgaaccgta
     1381 taacattctt tcagataatt tactaagtgc tggtccaagc tattggaaga taaataattg
     1441 gggttggagt aacctttaca accaagtatt ctcaaaaaga gtttaacgct actaaataag
     1501 atttaatagg tatagggtct acaatgacaa tatcctgtga taaagaaaat aaatgacttt
     1561 gcgatatcaa tagatctaag aaattattta taataatttg acaataatct gggtattaat
     1621 cactccttgg ctcaagtcat tcttatttta tttttatttc tattttaaaa agataaccct
     1681 aactcgaact aaggttcaaa ttacgcttca agaccaggca aattacacta gcaaaccgtt
     1741 tattgtgatg actatacaca tgttttaatt tatatcgcga atgttcaatg aacttctttt
     1801 tacaaatgat tttgctcata atatctagta gaaaacttct gatcaactgt tcttctggcc
     1861 agctctcgat aacactcgtc catatagcta tccaatggat cagtcctttt cttagatcta
     1921 tgtagcgatg gagaacttag cgtagaaacc tgattgtctg ccgacaaaat attcgaggta
     1981 gggaa
//
LOCUS       DATAAS010000207         2959 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1854019, whole genome shotgun sequence.
ACCESSION   DATAAS010000207 DATAAS010000000
VERSION     DATAAS010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2959)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2959)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2959
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1854019"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(320..550)
                     /locus_tag="VHF08_03335"
     CDS             complement(320..550)
                     /locus_tag="VHF08_03335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067712.1"
                     /translation="MFSQNQLVRIPKRLVRYNLKSEYHIITNQYASLENKSVLAAKSV
                     YNKKRQYACEKCGKVFNAWKNLHVHKVENHSY"
     gene            complement(662..1363)
                     /locus_tag="VHF08_03340"
     CDS             complement(662..1363)
                     /locus_tag="VHF08_03340"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2067713.1"
                     /translation="MSGLGRVYWKEVIEVLRVIIPQYDKVNRAISFGRDNDFRLKAIR
                     DRIFPGETILDAGSGFGNMTNLVLSEVRDSTKVIMYDPILDMLTNAKKFFSHDMLQYV
                     ACGVFEYLPFQNDVFDVVMYGYSLRDSIELKQAIAEAYRVLKIGGRIIIVDIGKPDNL
                     IIRAGVTFYLKYILKVLAFAAAGKSGLKFKTLYGTYIRWPRNSELNALLCEKFSSVKF
                     DKAMMGGAIIVSAYK"
     gene            1734..2207
                     /locus_tag="VHF08_03345"
     CDS             1734..2207
                     /locus_tag="VHF08_03345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067714.1"
                     /translation="MVNYRSKDNDSEEITENIYDTIQENFIRTVDEWAKIQPQYSQSI
                     SNLQLDFIQTIKNTIQNAISSHKQITGVWNYTASAPYLDHFTKQSNDITNNIIRTALI
                     NNQLTITAFDAARENLKIYNRTIETVTDYNNDIAKAWNSFFYMQQDYFNNMFRFL"
     gene            2411..>2959
                     /locus_tag="VHF08_03350"
     CDS             2411..>2959
                     /locus_tag="VHF08_03350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HEX2067715.1"
                     /translation="MVHSNSLTLDSMKDVHKQLCVIKRKKAIAAESAKAVAPPPKPAS
                     ATAKPSVSPSSLPSPASASISPPPAPVSPTAGGAGGSSANTTISLTGNGTNYSKVDGP
                     IDPGFKSKRQQAGTFQGIKVWGPLDAPGQLGIWGTEVCVDFDICVADGACIEACPVNV
                     YEWLDTPGHPASEKKPFMIREKD"
BASE COUNT         1020 a          539 c          471 g          929 t
ORIGIN      
        1 aaagctatat ctaattgctc ttctatactt acaccacagt cgaagggaac tcgtgcagat
       61 ccattacgat agttggaaaa agtattatga caatgtagct cgagttttag gaaatcagtc
      121 gtggctttgt accctatcag gtttatagag taaccaaata tatactatat taaggcgaca
      181 aacggatata cctcatactt tcaaaactat gctataaagc gactctgttt ataactaata
      241 atgatatctt aagaaaatat attgattatc tcttataaag aattattaaa tattaattga
      301 taatatagat gagaggttgt cagtaagaat ggttttcaac tttatgtacg tgtagatttt
      361 tccatgcatt aaatactttg ccgcactttt cacaagcgta ttgtcgtttc ttattataga
      421 cagattttgc tgccagcaca gatttatttt ccagacttgc atattggttt gtaattatat
      481 ggtattcgct ctttaagttg tatcgtacta gtcgctttgg aattctaacc aattgattct
      541 ggctaaacat gtatctacta taaggacgtt tggtataaaa taatttaaat aaaatttctt
      601 tcataagtac aatttcaaaa tatttattag atcttgtaac agcattttag aatgcccaat
      661 attatttata ggcagaaaca ataatggcgc cgcccatcat tgctttgtca aatttaacgc
      721 ttgaaaactt ttcgcatagc aacgcattta actcagagtt tctcggccat cggatataag
      781 taccataaag tgtcttaaac tttaatcctg actttccggc agcagcaaaa gcgagtacct
      841 taagaatata ctttagatag aaggtaaccc ctgctcttat tattagatta tcaggtttgc
      901 ctatatcaac tatgattatg cggcctccta tctttaaaac cctatatgct tctgcaattg
      961 cttgttttaa ttcaattgaa tcacgtagtg aatagccata cattacaacg tcgaaaacgt
     1021 cattttggaa aggcagatat tcgaaaacgc cacaggcaac atattgcagc atgtcatgac
     1081 taaaaaattt ttttgcattt gtcaacatat caagaatggg atcatacatg ataactttcg
     1141 tactgtctct tacttcgctt aatacaagat tagtcatatt tccaaaacca gaacctgcat
     1201 ctaatatagt ctctcccggg aaaatacgat cccgtattgc ttttagacgg aaatcattat
     1261 ctctgccaaa cgatatcgct ctgttaactt tgtcatactg cggaattatc acacgtaata
     1321 cttcaatgac ctctttccaa tatacacgac ctagacctga caactttgaa tatcataagg
     1381 gttaacttta ttatcactta tagttctaga tattgaatga ttagctgccc attcaatctg
     1441 ttctacgact ttgtgtaatt aaaaatcaat gtcggcatat atcagtttaa tatcgttcca
     1501 attaagaatt atgatatata taaatacata tatatatata ttttaatcaa attctaatta
     1561 gaataaagac atataatagc aatatattct acttaactaa aattacccat ctcgtgtatt
     1621 agtaaataac ttgtaacaca gacatatgat gggcatatag acatttaatg gtaaacaatg
     1681 ccatatataa ccaaagttta tatcaaggtg catgcttcat agatatgttt aagatggtaa
     1741 attacaggtc aaaagataat gatagcgaag aaatcacaga aaatatttat gatactatac
     1801 aagaaaactt tatcagaact gtagatgaat gggcaaaaat tcaaccgcaa tattcacaat
     1861 ccatttcaaa tttgcaatta gattttattc aaacgataaa gaacacaata cagaatgcta
     1921 tttcttcgca taaacagata acaggagtct ggaattatac cgcgtccgcg ccatatctag
     1981 accacttcac aaaacaatca aatgatatca ccaacaatat tataagaaca gctctcatca
     2041 acaaccagct aacaattact gcttttgacg cagcaagaga aaatctgaaa atatacaaca
     2101 gaacaattga aacagttacg gattacaata atgacatagc aaaagcatgg aattcgtttt
     2161 tctatatgca acaggattat tttaataata tgtttagatt tctctgactt ttaagtgact
     2221 attaatgtat cactcctatg atctcttata ataagaaatt gcaaataata acattgaata
     2281 agaattgcat tgttattgag tcaagaatgt caccttgtta ggattattcc aaaaattgat
     2341 aaataactaa ttgtaagact acatagtgtc aaacttaaac gaatatgtct gtgaagactg
     2401 tggctctctc ttggtacata gcaactcact aactcttgac agtatgaaag atgtacataa
     2461 acaattatgt gttatcaaaa ggaaaaaagc tatagctgca gaatctgcta aagctgttgc
     2521 accaccacct aaaccagctt cagcaactgc aaagccctct gtgtctccaa gctctctgcc
     2581 ttcacccgca tccgcttcga tctctcctcc tcctgcgcct gtatctccta cagcaggagg
     2641 agcaggaggt agtagtgcta acacaactat ttctctcaca ggcaatggaa ccaactattc
     2701 taaggtagat ggacctatag atcctggctt taaatcaaag agacaacagg caggtacatt
     2761 tcagggtatt aaggtatggg gtcctttaga tgcaccagga cagcttggaa tatgggggac
     2821 tgaagtatgc gttgactttg atatatgcgt agcagatgga gcatgtattg aggcttgtcc
     2881 agtcaatgta tatgaatggc tagatactcc aggacatcca gcatcggaaa agaaaccttt
     2941 catgattaga gaaaaggat
//
LOCUS       DATAAS010000208         2351 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2926183, whole genome shotgun sequence.
ACCESSION   DATAAS010000208 DATAAS010000000
VERSION     DATAAS010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2351)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2351)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2351
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2926183"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..457
                     /locus_tag="VHF08_03355"
     CDS             <1..457
                     /locus_tag="VHF08_03355"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX2067716.1"
                     /translation="TDTPVGSEETIDLLQHNQKANISFTPNSVVKMINGNSKVESLTI
                     YNSKTKSESKIDVDGVFVEMGYIAKTDIVKDLVQLNGNKEIIVDKYCATSNEGIFAAG
                     DVTDVPYKQAIVSAGQGAVAALSAYNYIQKLKGKPTVKTDWKSIARRKT"
     gene            972..>2351
                     /locus_tag="VHF08_03360"
     CDS             972..>2351
                     /locus_tag="VHF08_03360"
                     /EC_number="3.4.11.-"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004177 - aminopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008237 - metallopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HEX2067717.1"
                     /translation="MQNDNASSPKAKKFQFPGSTPHYPPLFPFSVDYMMLKIKPDFDS
                     NTLKDCTQKLKITACEDISEIKLDIAEIDVHQVISSSYNTSVMSFDVLKDDDKLIITF
                     GQTLKKGSTTDLTIRYSAGYYRQKDGIVGIYKPRSGFYFVSSSEHSQNKQAWTQGQAS
                     ESKYWFPCIDDPQVKFAREIQVTVPQNDFIVISNGELIHKEGNVWTWIELNPTPAYLT
                     SVVIGKFDQEQQEYSYCHVDNNKSTSNSIPLIYYWPKEIPKKDAMLTFANTPNMMRFF
                     EEYFDMKYPYKKYSQVAVEEFEFGGMENTSCTTLTKYLLHDEIAAIDYTRDIDVISHE
                     LAHQWFGDLVTCRDWSNIWLNEGFATYCEALYWESIKGFDEFCYKVMKVADQYLEESR
                     HLYKRPLVTTVYKHPDDLFDSHSYEKGGCILHMLRNDIGNNNFRRCINNYLDTYKNKT
                     SETDDLRKIV"
BASE COUNT          898 a          363 c          416 g          674 t
ORIGIN      
        1 aacagataca ccagtaggtt cagaagaaac tattgatttg ttacaacaca atcaaaaggc
       61 taacatatct tttactccaa attctgtagt gaaaatgatt aatggtaatt ctaaagttga
      121 gtctctaact atctacaatt ccaaaactaa atcagaatcc aagattgatg tcgatggggt
      181 atttgtagaa atgggatata ttgcaaaaac agatattgtt aaggatttag ttcaattaaa
      241 tggcaacaaa gagataattg tagataagta ttgcgcaact tcgaatgaag gaatatttgc
      301 ggcaggggat gttacagacg taccatacaa acaagcgatt gtctctgctg gtcaaggagc
      361 tgttgcagca ttgtctgcat ataactacat tcagaaatta aaaggaaaac caacggttaa
      421 aactgattgg aaatctattg caagaagaaa aacgtaaacc attaaattaa tatcgcgaaa
      481 tagaaaaaag taaagataga tcagtgatac ggaataacta ctataaaatc agtcatggga
      541 gatccggata acctatctta ggatattcaa ataacatgac aaaaaactta acaaaaaaag
      601 catgcccttc catctgtata caagagccaa ctccaactag actatgattt aaagatacag
      661 cagacctgca taataatatc atagaggagt caaattttct attgataata cagtagaaga
      721 tgtatagatt ggatgacaaa aatcaaatga tctcatatac ttatcaaaac ccaaagtaaa
      781 cctgttgcaa tagtggaaag gttaaacaag ataaaagttt tgcaaactcg agcaattatt
      841 ggtaagggaa gtgaaaaatg tggcaacaat tagtttattt ggaagaggca tgatggtaaa
      901 aatggtaaaa acatttgatg tgctcaatcc tttaatagca actatgtaag tagaatagtg
      961 attatatcga tatgcaaaat gataacgctt cttctcctaa agccaaaaaa tttcaatttc
     1021 caggaagtac gcctcattat cctccactat tcccttttag tgttgattac atgatgctta
     1081 aaataaagcc cgattttgat tctaatactc tcaaggactg tacgcagaaa ctaaaaatta
     1141 ccgcatgcga agacataagt gaaattaaac tcgatattgc agaaatagat gtacatcaag
     1201 taatatcttc ttcttataat acttctgtga tgtcttttga tgttttaaaa gacgatgata
     1261 agctgattat cacatttggg caaacattga aaaaaggtag cacaactgat cttactatca
     1321 gatattctgc tggctattac cgccagaagg atggtatcgt tggtatttat aaaccaagga
     1381 gtggatttta ttttgtatca tccagtgaac attctcaaaa taaacaagca tggacacaag
     1441 gacaagcatc agaatcaaaa tattggtttc catgtattga tgatcctcaa gtcaagtttg
     1501 cacgagaaat tcaagttaca gttccacaaa atgattttat cgttatatct aatggtgaat
     1561 taatacacaa ggaaggaaat gtatggacat ggatagagct aaatccaact cctgcatatc
     1621 ttacatcagt tgtgataggt aagtttgatc aagaacagca agaatattct tattgtcatg
     1681 ttgataacaa caagagtacc agtaacagta ttccgttaat atactattgg ccaaaagaaa
     1741 taccaaaaaa agatgcgatg ttaacatttg caaatactcc aaatatgatg agattctttg
     1801 aagaatattt tgatatgaag tatccataca aaaagtattc acaagttgca gtagaagaat
     1861 ttgaatttgg aggtatggaa aatacaagtt gcactacctt aacaaaatat ctcctacatg
     1921 atgaaatagc agcaattgac tacacaagag acattgatgt tatttcccat gaacttgctc
     1981 accaatggtt tggtgatttg gtaacatgta gagattggtc aaacatatgg ctaaacgaag
     2041 gttttgccac atattgtgaa gcattgtatt gggaaagtat caaaggattt gatgagttct
     2101 gctacaaggt aatgaaagta gcagaccaat atcttgaaga atcaagacac ctatacaaac
     2161 gaccacttgt aacaacagtc tacaagcatc ctgatgatct atttgactca cattcttatg
     2221 aaaaaggagg ttgcatttta catatgttac gtaatgatat aggtaacaac aactttagaa
     2281 gatgtataaa taattatctt gatacatata aaaataagac tagcgaaact gacgacctgc
     2341 gtaaaattgt t
//
LOCUS       DATAAS010000209         1742 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2398190, whole genome shotgun sequence.
ACCESSION   DATAAS010000209 DATAAS010000000
VERSION     DATAAS010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1742)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1742)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1742
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2398190"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(362..1273)
                     /locus_tag="VHF08_03365"
     CDS             complement(362..1273)
                     /locus_tag="VHF08_03365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-CoA hydratase-related protein"
                     /protein_id="HEX2067718.1"
                     /translation="MKHIVLDLQTNIDIAIIKINRPEVLNALNKEIMTELSQAIDIVS
                     TDDGIKVIVITGTGERSFCAGADIRYVVNVDPIEAERYATFIHTLLNKIENLQKPVIA
                     AINGYALGGGCELALACDIRIASSNAKIGQTEVTIGIPPGWGGTQRLLRIVGPAKTKE
                     LIYTGKMITAEEAARIGLVNKVVSLTAEEEGRVPSSAASTTESGTSTTVSNNPSKERQ
                     QEKQRSNELAKILNKKLLDECLSFAKEITKNSFIAVKTSKMLINKAMDVDIDTGLRLE
                     IYGWALCFAHEDRQKMMSSFLNKGKQQ"
BASE COUNT          538 a          334 c          248 g          622 t
ORIGIN      
        1 gtgttactgt attttccttt ttcttcaaaa tcaactaaat cattaaaatt aaaattatct
       61 ccaatcaaag cctagtaata gtctctgttg ttttttactg tctccgtaaa ctattggagg
      121 tacaggagaa gcaatataat tttctttatt gccattatgt tattatcatc actatggctg
      181 tcatcattaa ggcataatac ctcaatacta atcccagctc ttttcatgat acacacaaca
      241 agatacgcat attcgtcaag tccttgtttt tttcagatac actagtaggt tgtttgattg
      301 gtgtttgaag gtctaagata agaccatcca tttcagagtc tcatagaaaa ttcagctcct
      361 tttactgttg ctttccttta ttcaaaaaag aagacatcat tttttgtcta tcttcatgtg
      421 caaaacataa tgcccaacca taaatttcta aacgtaatcc tgtatcaata tcaacatcca
      481 ttgctttgtt gattagcatt ttgctagttt taacagcaat aaaactattc tttgtaatct
      541 cttttgcaaa ggagagacat tcatccagta actttttgtt tagaatttta gctagttcat
      601 tggatctttg tttttcctgt tgtcgttctt tagaaggatt attagatact gtggtactag
      661 ttccactttc tgttgttgaa gctgcagatg atggtactct tccttcttct tcagcagtca
      721 aactaactac tttgttaaca agtccaattc gtgctgcttc ttctgctgtt atcattttac
      781 cagtatagat aagttctttt gttttcgcag gaccaacaat tcttaatagt ctctgagtac
      841 ctccccatcc cggaggaata ccaattgtaa cttccgtctg gcctatcttt gcattactag
      901 atgctattct gatatcacat gccaatgcaa gttcacatcc tccacctaaa gcataaccat
      961 ttattgcagc aataacaggc ttctgtagat tctctatttt attaagtaaa gtatgaataa
     1021 aggttgcata tctttctgct tcgataggat caacatttac tacatatctt atatctgcgc
     1081 ctgcacaaaa tgatctttcc cctgttcctg taattacgat aacctttatg ccatcatcgg
     1141 tactaacaat atctattgct tgagataatt ctgtcataat ctccttgttc agagcattaa
     1201 gtacttcagg tctattgatt tttataatag caatatctat gttggtttgc aaatcaagta
     1261 ctatatgttt cattacaaca gacatgcaaa aagatatagc agacttaatt taagtatcta
     1321 tcagaaagga tatacaaaga caatagtgtt agccaaacat tcaggactag ttagtgaaat
     1381 tactgacaca acagcagaca cagtttctta gataacgagc aaaactacat cgcggtggga
     1441 atgaaaatac ttctaatgtc tgactgtgca atagcgtcac acgttgtaaa caatttccac
     1501 ctagaaagac acatcaaata acttaaaaaa atatatcttc attcctagtt agttattaaa
     1561 tctactacaa ataactttat tcagtgtaaa aacgcttcca taatattcta tactatcaac
     1621 ttatgactaa tcctgtgaag acttggagca agtttatacc ttaaatgtca gagcattaga
     1681 gagatgaaca agtcagattg ttttttctta aatttcttgt aatcgttaac atctttccag
     1741 ta
//
LOCUS       DATAAS010000210         3494 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1386504, whole genome shotgun sequence.
ACCESSION   DATAAS010000210 DATAAS010000000
VERSION     DATAAS010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3494)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3494)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3494
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1386504"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            426..1646
                     /locus_tag="VHF08_03370"
     CDS             426..1646
                     /locus_tag="VHF08_03370"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX2067719.1"
                     /translation="MKNIVILGGGYAGIFAAANLINKRRNIKITIIDKNPYHQLLQQI
                     HLIPANIKIPEYLTLKINDLLKNDADFFEDNLESINLEKRKVITKTSIEYSYDYIIIA
                     LGAINAYYSVKGAQQYSHSFRSVGDALKLREAITKLPSDSVIVICGGGATGISLAGAL
                     SETFGEKIKIKVVEAQDNILAEWDPRLVKTAKKILRERNVEILTGQPVKEIRNSSMII
                     GSDIRVNCDLTVWTAGIKGFDIKTTPHVKKTKSGRIIVNKYSQIEGFDNAFAVGDISA
                     FTLKNGVLSPQLAQFAVRQARNVAKNILRKEGGEPMIELDYSQKGQILSLGRRCIGLI
                     NGILVTGALCEYAEDFVIDNYIAAIENRGKGIPALAYESDLVSQISTSLNFMTYAASR
                     VLSNRSNATRGDLV"
     gene            complement(1836..2729)
                     /locus_tag="VHF08_03375"
     CDS             complement(1836..2729)
                     /locus_tag="VHF08_03375"
                     /inference="COORDINATES: protein motif:HMM:NF014375.4"
                     /note="Presence of a B(12) (cobalamin)-binding domain
                     implies dependence on cobalamin itself, in one of its
                     several forms, or in some unusual lineages, dependence on
                     a cobalamin-like analog; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-dependent protein"
                     /protein_id="HEX2067720.1"
                     /translation="MVYIRSKKVKGIDYAYLVQSVWDHKNNTSKQQIIKYLGKTSNVT
                     IEDIPKEYRHDPKIITFISIHSSSPADKEKLVAKIQEEIFALLTECNLGDLIKVYDKY
                     SSLFGLANFYDKLLKPVMYKIGELWEQEKLDVATEHACTNTANSLVKVINERISHSKA
                     TRSQYKILICTPEGELHSLACNIIESLLLSKGFKVYNISPSVPSESIIDYLKDIEPDI
                     MLISITITDNIKPAERLIKEIRLKYHKVPIIIGGSGLNKVDDYVTNDDIVFMPNISFG
                     EIIKLIYNISVEKQIGNNQPT"
     gene            complement(2825..3385)
                     /locus_tag="VHF08_03380"
     CDS             complement(2825..3385)
                     /locus_tag="VHF08_03380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067721.1"
                     /translation="MESQKISKLFILYCSLAGFISAWAISGLLVIVDLISGTPPGTFF
                     AVIGISIGFTDTTTAQYIGFALHVLTGITAGNIFGQLAIFWRKIAPYNARYGVPRGMI
                     VGIALWLVLFIPLATFGIQPRLDSFAFSAPNQYIYSIALHFQGLYPIIIGGSFFFHLI
                     YGAMTGFISGRMAGLGMFARIKATAQ"
BASE COUNT         1251 a          551 c          584 g         1108 t
ORIGIN      
        1 cagcaacttg caactactat aagagaaaat acgatacaaa atataacagc agttacaaca
       61 attacaaatg cagcaaagct aatacctctt tcaaactctt taacaacaaa actcaacttg
      121 ggacagatta tacaatgata gtatatagaa gatgtgaatt tattattatt aatttcctaa
      181 acccactatt atgccaataa ttttgcaatc aaaaaaacaa attattaaaa atactagtac
      241 agatgttact aatatgatca gtagataacg aggaaagtat ggataaagaa ttcaattcca
      301 tatgagtaaa tgaactattt agacgattat ctataaaatt tgagctttgc ttttagttag
      361 ttagttggca ctattattat aattaccact atgcttataa tctataatat agaatttact
      421 attctatgaa gaatattgtt atacttggag ggggttatgc agggatcttt gcagcagcca
      481 atctcataaa caaacgtaga aatataaaaa tcactattat tgataaaaat ccatatcacc
      541 aactcttaca gcagattcat cttataccag caaatatcaa aattccagaa tatcttactt
      601 taaagattaa tgacctatta aaaaatgacg cagatttttt cgaagataac ttggaaagta
      661 ttaatttaga gaaaagaaaa gttataacca aaactagcat agagtattca tatgattata
      721 taataatagc tttaggagcc ataaatgcat attatagtgt aaaaggagca caacaatact
      781 cgcactcttt tagatcggta ggtgatgctc taaaacttag agaagcaatc acaaaactac
      841 catcagattc tgtgattgtt atatgcggcg ggggagctac tggtattagt ttggcaggag
      901 cgttatcaga aacttttgga gaaaaaatca aaataaaggt tgtagaggca caagataata
      961 tacttgctga atgggatcct cgtttagtca agactgccaa gaagattttg agagaaagaa
     1021 atgtagaaat actgacagga cagccagtaa aagagatccg taactcttct atgataatag
     1081 gttctgatat aagagtcaac tgtgatctaa ctgtctggac cgcaggtatc aaaggatttg
     1141 acattaaaac tacaccacat gttaaaaaaa ccaagtctgg aagaataatc gtaaataagt
     1201 attcgcagat agaaggcttt gataatgcat ttgctgttgg tgatatctcc gctttcactc
     1261 ttaaaaatgg agtgctttct ccacagcttg cacagtttgc ggtcagacag gcgcgtaatg
     1321 ttgccaaaaa tatcctgcgt aaagaaggag gagaaccaat gatagaactt gattattcac
     1381 aaaaaggtca aatattgtca ttaggtagaa gatgtatagg gctgataaat ggtattctag
     1441 ttacaggagc tttgtgcgag tatgcagaag attttgtaat tgataactat atagcggcaa
     1501 tagaaaatag aggaaaagga atacctgctc tagcttatga aagcgatcta gtatcgcaaa
     1561 tttcaacatc gttgaatttt atgacttatg ctgcatcaag agtattatca aacaggtcaa
     1621 atgcgacgag aggagatcta gtataaggaa attaagagaa caaattaata gtgaatataa
     1681 aacataatct gaactactat attaattgaa ataacagaag taacagtaca aaaaagtaca
     1741 gtataaaaac acctcgatct atctaaattg caatcaacaa acaaaaatga aacattttaa
     1801 tgttattaca agtttttttc taatatattg gaaaattagg taggttgatt gttgccaatt
     1861 tgtttttcaa cagatatatt gtatattaat tttattatct caccaaatga tatattaggc
     1921 atgaagacga tatcatcatt agtaacgtaa tcatcaacct tatttaaacc agaaccgcct
     1981 attattattg gtactttatg atactttaaa cgaatttcct tgatcagtct ttcagctggc
     2041 tttatattgt ctgtaatagt tattgaaata agcataatat ctggctctat atcctttaaa
     2101 tagtcaataa tcgactctga aggaactgaa ggtgagatat tatatacttt aaatcctttg
     2161 ctaagaagaa gagattctat tatattacag gctaaactat gtagttctcc ctctggagta
     2221 catatcagaa ttttatattg tgaccttgtt gcttttgaat gagaaattcg ttcatttatt
     2281 acctttacta agctgttagc agtattagta catgcatgtt cagttgcaac atcaagtttt
     2341 tcttgctccc atagttcccc aattttatac atgacaggtt ttaatagctt gtcataaaaa
     2401 tttgcgagtc caaataacga tgaatactta tcgtatactt tgataagatc acccaggttg
     2461 cactctgtta acaacgcaaa tatttcttct tgtatttttg ctaccagttt ttctttatcg
     2521 gcaggagaag agctgtgaat tgagataaat gtaataatct taggatcatg acgatattct
     2581 ttaggaatat cttcgattgt tacattagat gtttttccaa gatactttat tatctgttgc
     2641 tttgaggtat tgtttttatg atcccacacg ctctgaacaa gataagcata atcaatgccc
     2701 tttactttct tacttctaat atataccatt tcagaacaaa attattcctt tatttactat
     2761 tctcaattat attgaattag tggtaaataa caattctggt actaaaagag aactattagg
     2821 aggattattg tgcagtggct ttaatccttg caaacattcc tagtcctgcc attcttccag
     2881 atataaatcc agtcattgca ccatatataa gatggaaaaa aaatgatcct cctataataa
     2941 taggatataa tccctgaaag tgtaaagcaa tgctatagat atactgattt ggtgccgaga
     3001 atgcaaacga atcaagcctt ggctgtatcc caaaggttgc gagtgggata aataacacaa
     3061 gccataaagc tataccaaca atcattcccc ttggtactcc gtatcgtgcg ttatatggtg
     3121 caattttccg ccaaaatatt gcaagttgtc caaatatgtt tcctgcagtg attcctgtca
     3181 agacatgtag ggcaaaccct atgtattgag cagttgttgt atcagtaaat cctatcgaga
     3241 tgccaattac tgcaaagaaa gtacctggtg gagttcctga tatgagatca actattacaa
     3301 gtagacccga aattgcccaa gctgaaataa atcctgctaa tgagcaatac aatataaata
     3361 atttagagat tttttgcgat tccataaatt gcattgatag tagtactata aaaacaagtg
     3421 actaagattt ttaatagtgc ctaactatag gccatgaact cttattttat gaaatacgtt
     3481 atgggatgct acta
//
LOCUS       DATAAS010000211         2414 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3469218, whole genome shotgun sequence.
ACCESSION   DATAAS010000211 DATAAS010000000
VERSION     DATAAS010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2414)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2414)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2414
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3469218"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            170..1213
                     /locus_tag="VHF08_03385"
     CDS             170..1213
                     /locus_tag="VHF08_03385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX2067722.1"
                     /translation="MKIAVVGIGVAGAYLMNRLSDDPDNHVVGFERMPKAHHDAVCAW
                     ATCQNVMSGLAKNCGLNFDQYILHDGKYMKVDLKETNGTRDNSIDIRLKGMVSYDKLK
                     LIQDMIRGTKVEFGRAPKKENLESDFDIIIDSTGFHRNYLPKPKKEMWIPCVQYKVKY
                     DNNNMPYDDFYLQTFPSMTGYFWYFPLENGYAHIGAGDFQRRQNNKFVDQFLKKYKCE
                     VIKKVGRPIRISPPINCEPFTDGRKTVGVGESIGTVYPLLGEGIIPSTWCAELFIQQL
                     HNNIKAYRDVVLKRFRIYTIVFNFIQMKISGKFNMIKHSFDLLKIYNHMKREENRYGM
                     EIKIEDMIKISKI"
     gene            complement(1373..1897)
                     /locus_tag="VHF08_03390"
     CDS             complement(1373..1897)
                     /locus_tag="VHF08_03390"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000309 - nicotinamide-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide adenylyltransferase"
                     /protein_id="HEX2067723.1"
                     /translation="MSRGLFVGRFQPFHLGHLATVKFALNRVEELVIVIGSAQTSHEM
                     RNPFTAGERIQMIRNSLVADSEVDIRRILLIPVSDIYIHSLWTYQVDILVPKYDVVFT
                     NDLLTALLFKEREIKVVEPSLYRRKELSATEVRLKMAKDEDWKKLVPFQTAKVVEDIQ
                     GIERIKAIFAKHEI"
BASE COUNT          784 a          376 c          436 g          818 t
ORIGIN      
        1 ctactaatat tgctcccata aataataatc ctagccctgc ccctgcagaa ggaggcattc
       61 taattttgtt tgctgatgac aaggtcctgt ttatataaca acaatattag gcaataatat
      121 tttttgtgaa tgtttttatt aaacattatt ttctctagtc aatatcttta tgaaaattgc
      181 agttgttggg ataggagttg ctggagcata tcttatgaat agattaagtg atgatcctga
      241 taatcacgta gtaggttttg agagaatgcc gaaagcccac catgatgctg tctgtgcatg
      301 ggcaacttgt caaaatgtaa tgtcaggttt agcaaaaaat tgcggcctga attttgatca
      361 atatatccta catgatggaa aatatatgaa agttgacctt aaagaaacaa atggcactag
      421 agataacagc atagatattc ggttgaaagg aatggtcagt tatgataagt taaaattaat
      481 tcaagacatg ataaggggta caaaagtaga atttggcaga gcgccaaaaa aggagaatct
      541 tgagtcagat tttgatatca ttattgattc aactggattt catcgaaact atcttccaaa
      601 accaaaaaaa gaaatgtgga tcccatgcgt ccaatataag gtaaaatatg ataataataa
      661 catgccgtat gacgacttct acttgcagac atttccctca atgactggct atttctggta
      721 ttttcctctc gaaaatggct acgcacatat aggagctggg gattttcaaa gaagacagaa
      781 taataaattt gtcgatcaat ttttgaagaa atataaatgt gaggttataa aaaaggttgg
      841 aagacctatt cgaattagtc caccaataaa ttgcgaacca tttacagatg gtagaaaaac
      901 agttggtgta ggcgagtcaa taggtactgt ttacccctta cttggcgagg gaattattcc
      961 ttctacatgg tgtgcagaat tgttcattca acaattgcat aacaatataa aagcctatag
     1021 ggatgttgtg ttgaaaagat ttagaattta cacaatagta ttcaatttta tccaaatgaa
     1081 aatatcagga aagttcaata tgataaagca ttcatttgat ttgctaaaaa tatataatca
     1141 tatgaaaagg gaggaaaatc gatatgggat ggaaatcaaa attgaagaca tgataaaaat
     1201 ttcaaagatt tgaaggaatt gcaatataaa tgggagtatc gaaaccattc caaggacaag
     1261 tactattcac aataaaagca agatctattt tgtataaata agtttcaaag tatgtaattt
     1321 gctattgctt acagtatagt cgatggagga aattaaaatc attaatctta actcatattt
     1381 catgctttgc aaaaattgct ttgattcttt cgataccctg tatatcttcc acaacttttg
     1441 cagtctgaaa gggaacaagc tttttccagt cttcatcttt tgccattttt aatctaactt
     1501 ctgttgcaga caattctttt ctccgatata aagacggttc aactactttt atctctcttt
     1561 ctttaaataa aagagctgta agaagatcgt ttgtaaaaac tacatcgtat tttggaacta
     1621 aaatgtccac ctgatatgtc cacagagaat gtatgtatat atcagagaca ggaatcaaga
     1681 gtattcttct tatatcaact tcactatctg ccactagcga atttctaatc atttgaatac
     1741 gttcccctgc agtaaatgga ttcctcattt catggctagt ctgtgcactt ccaattacta
     1801 ttacgagctc ttctactcta tttaatgcaa acttgacagt agcaagatgt cctaagtgga
     1861 agggctgaaa tctgcctaca aataagcctc tagacatcac tgttgtaaac caaactatga
     1921 gataatttaa agtaatttta agaaatcaaa tatcttgagc acctagagcg attaaagttt
     1981 ctaaagtctg tttaacaatt attattaagt attatgagtt gtgatcatgc ggcgttctgc
     2041 tgctatgcca ttggattgtt ctatctctgc cataggctgt ctgtataatc tctattttgt
     2101 gttctgcata tttctccttt cttctatatg attctattgt gtagtatttc tcatagtgat
     2161 cttaataata atagtgttga tggcgatgtt gctagtgttg ctgtacctga ggcatattcc
     2221 tctggtaatt atgataatga tttttgccag aatacttgat taaagaaatg agagatatga
     2281 aaaaaggatt taagaaatct ctcttttact cttggtttgt cggttgttcg ttttcttgtt
     2341 gttgttgttg ctgctgtttt ctgggtttgg cttttgaatt aactgtatat ccttgtcctg
     2401 ctgctgtagt ttgc
//
LOCUS       DATAAS010000212         2171 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2399564, whole genome shotgun sequence.
ACCESSION   DATAAS010000212 DATAAS010000000
VERSION     DATAAS010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2171)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2171)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2171
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2399564"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..719)
                     /locus_tag="VHF08_03395"
     CDS             complement(<1..719)
                     /locus_tag="VHF08_03395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase II"
                     /protein_id="HEX2067724.1"
                     /translation="MQNTKSREIIINPTVPPSNLDDFLSRLNNITIIKADPKHVQAKN
                     FKIIFESSDADLVICKTIPEIQEFKSIGKAAGFLKRVSNNDDIDEIGRASQAGADFVI
                     VEAEDWKIIPLENVIAQLHKSNTKVYTTAKNADEIRTMFSVLELGVDGVIFSTDNEKA
                     VDELRDYLDAFVFPIKSAKILDVRDVGTGERVCVDTTSMLQLGEGMLIGSKSNFLFLV
                     HNESVGSSFTSPRPFRVNAGAV"
     gene            complement(700..1494)
                     /locus_tag="VHF08_03400"
     CDS             complement(700..1494)
                     /locus_tag="VHF08_03400"
                     /EC_number="2.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate
                     synthase"
                     /protein_id="HEX2067725.1"
                     /translation="MVFGRDIRLTRILKEGKMLCIPMDHGISNGPIQGLENIHDMIYQ
                     CENAGLTCVLVNKGVIKTMPRPPKIGLIVHFSGSTSIGPAPNRKILMGSLEEALRLGA
                     DAVSIHINIGSKEEPEMLHKLGTISDKCDEWSVPLVAMMYPRGENVKNPYDPDIVAHV
                     ARIGAEAGADIVKTVYTGDSDSFRRVIKSCPVPVVIAGGPKANSDEEIIEMCAGAMKA
                     GAKGVTFGRNIFQYQNPPAIVNALHKVIVQGINTKEVLRDLAKYKE"
BASE COUNT          674 a          418 c          345 g          734 t
ORIGIN      
        1 actgcacctg catttactcg aaagggtctt ggtgatgtaa atgaggatcc gaccgattca
       61 ttatgaacaa ggaataaaaa attagattta cttccaataa gcataccttc ccccaattga
      121 agcattgacg tagtatctac acagactcgt tcgcctgtcc ctacgtctct tacatctaaa
      181 atctttgctg atttaattgg gaaaacaaaa gcgtctagat aatcccttaa ttcatctact
      241 gccttttcat tatcagttga gaatataaca ccatctacac ccaattctaa aactgaaaac
      301 attgttctga tctcgtctgc atttttggca gtagtataga ctttagtatt tgatttatgg
      361 agttgagcaa tcacattttc taaaggtatt attttccagt cctctgcttc gacaatcaca
      421 aagtctgcac cagcttgaga agccctgcca atttcatcaa tgtcatcatt atttgaaact
      481 cttttgagaa atcctgcagc tttcccaata gacttaaatt cttgtatttc cggaattgtt
      541 ttgcatataa ctaaatctgc atcagatgac tcgaaaatta ttttgaaatt ttttgcttgt
      601 acatgttttg gatctgcttt tataattgta atattattta gtctagataa gaaatcatct
      661 agatttgatg gtggaaccgt tggatttatt ataatctctc tactctttgt attttgcaag
      721 atctcttaac acctcttttg tattgattcc ttgtacgatc actttatgta gtgcatttac
      781 aattgctggt gggttttgat attgaaatat attacgacca aatgtaacac ctttcgcacc
      841 tgctttcatt gctcctgcgc acatctcgat tatttcttca tcactattcg ccttgggtcc
      901 tcctgctatc acaacaggca cagggcagct ttttattact cttctaaaag aatcactatc
      961 accagtataa actgtcttga cgatatcagc tcctgcctct gcacctattc tcgctacatg
     1021 ggctacaata tctggatcat aaggattctt gacattctca ccgcgcggat acatcattgc
     1081 tacgagcggt acgctccact catcacattt atcagaaatc gtccctaact tgtggagcat
     1141 ctctggttct tccttggatc caatattaat atgaattgat acagcatcag cccccaatct
     1201 caatgcttct tctaagcttc ccattaaaat cttcctgttt ggggcaggcc cgatagacgt
     1261 acttccagag aaatgcacga tcaaacctat tttcggaggt cttggcatag tctttataac
     1321 tcctttgtta acaagaacac aggttaaacc tgcattttca cattggtata tcatatcgtg
     1381 aatattttct aacccttgga taggaccatt gctaatacca tgatccatag gaatgcagag
     1441 catcttgccc tcctttaata ttctagtcag tcttatgtct ctgccaaaaa ccatatttaa
     1501 gaagagcatc ttgcaaactc acttaaaaag tgatatgttt ttctatagat aagaatagta
     1561 tgaaatcata tcacaatcat ataacaacta gccactccga atacatgctt aaccttaccc
     1621 gttttaggta agcaaatatt atatatagaa tgcgtatatg ggatgcatga ttctataaga
     1681 ggctataagt caatttagca tttaatcttc ctattagttg tgcataggtg atataacgta
     1741 agtagtgacg ttcatatctc cggatttaaa tatttagaaa agattcgcac ggagccaaat
     1801 attttattga aaactataat atatcaatat ataaatatgt aaagatttat tttttgttca
     1861 gttaccttct attctaagaa gaagtacatt tgttgaattt ttttgataga ataaccagaa
     1921 aacgatcgat tagaatagaa caagaaggaa cctgatcaaa taagaaaata aaaataactg
     1981 cattttgtaa tggcgtggat cataaagatc agtgagaatt tgaaacatgt caagattgga
     2041 tgtgtttata gatgaacata atattttgta acgatgcata gattcaacgc tgtataatag
     2101 acctgccgct gtagagaaat agtggacaat tttgaaaagt atactaatga atagtaataa
     2161 catattattg t
//
LOCUS       DATAAS010000213         4262 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5090167, whole genome shotgun sequence.
ACCESSION   DATAAS010000213 DATAAS010000000
VERSION     DATAAS010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4262
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5090167"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(521..1885)
                     /locus_tag="VHF08_03405"
     CDS             complement(521..1885)
                     /locus_tag="VHF08_03405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HEX2067726.1"
                     /translation="MVITKEMAKVEFVIPSVLNKGSGEKKIALESSNLQDAFNKVSDQ
                     MGEDFKLKVFDLNGKPRALINIYINGKNMRFNTDGMAMSLNDGDSIYILPAVAGGAEL
                     TSNDMQRYSRQIMLEEIGFIGMEKLRNAKVCVVGVGGIGNPVVTQLTAMGISKLRIVD
                     RDVIEISNLHRQHLYAEDDIGKVKVEAAAQRLRKMNTAVEIEAVPISITKYTAEGIVE
                     GFDVVIDALDSIDARYALNDACIKHNIPFIYAGALGMLGSVCTILPNKSACLRCMFPA
                     LVEDDMPTCSTEGVHPSILYLVGGIQVSEAVKIITGQKPALVNKLLYIDLNELSFDKV
                     QMFRHEECHSCGSKKKVDTVKVVQQQLLIEELCGRDMGKRTYTVTPSELSSPIDLMKI
                     IENAELLGYQVKTRGSLGVTVENNSSSKLSVSFLTSGAATIVGAKDEEDALYIYRNFI
                     KDIS"
     gene            complement(1898..3121)
                     /gene="thrC"
                     /locus_tag="VHF08_03410"
     CDS             complement(1898..3121)
                     /gene="thrC"
                     /locus_tag="VHF08_03410"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEX2067727.1"
                     /translation="MGSIRSLKCRECSKEYAPQFKYICEECFGPLDVVYNFSLNINKN
                     TFSSRDVKTYWRYFELLPIADKSNIVDLSAGFTPLQKAGGLAEQIGELKNLFIKNDSV
                     NPTFSFKDRPAGVAVSRAKETKLKAVGCASTGNLASATAAHAAKAELPCYIFCPSDIE
                     KVKIAQALSYGAEFVAVDGTYDDANRVASVIGDSKGIGVVNINMRPYYVEGSKTLAYE
                     VAEQLNWEVPDNLIIPVGSGAMLNAICKGFEELHELGLVDSLENLKITAAQPHGCAPV
                     VDAFKKKIEVVPVERPKTIAKSLAIGDPGDGRYVLKRLSQYNGFAEEATDEEIVDGIL
                     MLAKTEGIFTEPAGGVSVAVLRKLVEEDKIDKDEKVVCYVTGNGLKATESIVDVLPKF
                     RTVKPDVQIVSAMIR"
     gene            complement(3305..3637)
                     /gene="hisI"
                     /locus_tag="VHF08_03415"
     CDS             complement(3305..3637)
                     /gene="hisI"
                     /locus_tag="VHF08_03415"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HEX2067728.1"
                     /translation="MNIKSVSDIDFPKRNGLLPVVVQDQKTKDILMLAYANEEALNNT
                     IKTGNAWFWSTSHNKLWMKGEESGHIQPVKEILVDCDSDALLYLVESQNPACHTGNRT
                     CFHNILEK"
BASE COUNT         1280 a          849 c          663 g         1470 t
ORIGIN      
        1 gaattcgact agacgccagc tcctgaagat ggatttaacc ttatactgta tatgtatctg
       61 cgggaggaac agattcttaa tgaacatggc ctaatcctac agtacagcgt acaggagaat
      121 aagtacttca tgatgatgat aggtagttca tgtaggtaat agtagaacaa aaacgacgtc
      181 ttctcaattt ctttcctttt acctagtcca gctgtttctt gattttagtc caaaatttat
      241 aactcatttt tgtctgcaat ttgcattctt ctatgaatag atgatatcag tacagtagat
      301 atcttgtcca atctttacag ttcactaggt cttcaaatcc gatgatgtac aattgtgtga
      361 ttgtaaatga gagtaatcta acataatatt ctgctcaata tcatcagtat taacttagtg
      421 ttgctctcaa tatacaaaaa ccaatctaaa gccaatactt ttctaacgag aggtaacgct
      481 attgattaat atatagtaat cagaaatctc gtaagaattg ttaagatata tcctttatga
      541 agtttctata tatatatagt gcatcttctt cgtcttttgc acccactatt gttgctgcac
      601 cacttgtcag aaaacttaca gacaatttac tagaactgtt attttccaca gtcactccta
      661 ggctacctct agttttaact tggtatccta acaattctgc attttctatt attttcatca
      721 aatcaattgg tgaagatagc tctgatggag tcaccgtgta tgttctcttg cccatatctc
      781 ttccgcatag ttcttctatt aacagttgct gttgtacaac ttttactgta tctacctttt
      841 ttttcgatcc acaggaatga cactcttcat gcctaaacat ttgaaccttg tcaaatgaaa
      901 gttcattcaa gtctatatag agaagcttat ttacaagcgc aggcttttgg cctgtaatta
      961 tcttgactgc ctctgagact tgaataccac ctaccaaata tagtatagac ggatgtacac
     1021 cctccgtgct acaagtaggc atatcatcct ccactaatgc aggaaacata caccgtaggc
     1081 atgcagattt atttggcaat atagtacata cggaacctaa catcccgagg gcgcctgcat
     1141 aaataaaagg gatattatgt tttatacatg catcatttag ggcatatcta gcatcaatgc
     1201 tgtcaagcgc atctataaca acatcaaatc cttctacaat accctctgct gtatatttag
     1261 taatagagat cggaactgct tcaatttcaa cagcagtatt catttttctc aatcgttgcg
     1321 ctgccgcttc aaccttgact ttgccaatat catcttctgc ataaaggtgt tgcctgtgca
     1381 agtttgaaat ttcaataaca tccctatcca ctattcttag tttactaatt cccatggcag
     1441 ttaattgagt aacaacagga tttccaatcc caccaacacc aacaacgcag acttttgcat
     1501 tgcgtagttt ttccattcca ataaacccaa tttcttcaag cattatctgt cttgaatatc
     1561 gttgcatatc attgcttgtc agctctgctc caccagcaac tgcgggtagt atgtatatag
     1621 aatcaccatc gttaagggac atcgccatac catcggtatt gaagcgcata tttttgccat
     1681 taatgtaaat gttgatcaga gcacggggtt tgccattaag atcaaacacc ttaagtttaa
     1741 aatcctctcc catctgatcg gaaactttgt taaatgcatc ttgtaaattg cttgattcta
     1801 acgcaatttt tttctctccc gagcctttat ttaataccga tggaatcacg aattcaactt
     1861 tggccatttc ttttgttatc accattttta cacatgatca tctaatcatt gctgaaacta
     1921 tttgtacatc tggttttaca gtacggaatt tcggaagtac atctacaatt gactctgtag
     1981 ccttaagtcc gttacccgtg acatagcaaa ctactttttc atctttgtct attttatctt
     2041 cttcaactag ctttcgaagt actgctacag atacgccacc tgcaggctca gtaaatatgc
     2101 cttctgtttt agccagcatt aatattccat cgacaatttc ttcgtctgta gcttcttctg
     2161 caaatccatt atattggctc aatcttttta gtacatatcg tccatcacca gggtcaccta
     2221 ttgcaagact ttttgcaatt gttttaggtc tttctacagg aacaacttca attttcttct
     2281 taaatgcatc gaccactgga gcacatccat gaggttgtgc agctgttatc tttaggtttt
     2341 ctagactatc aactagacca agctcatgca gctcttcaaa tcctttgcaa attgcattta
     2401 acattgctcc gcttccaacc gggattatta gattgtcagg aacctcccaa tttagctgct
     2461 cggctacctc gtaggcaagt gtctttgaac cttcaacata atatggtcgc atattgatat
     2521 tgactacacc aatgccttta gagtcgccta ttacagatgc gactctgttt gcatcatcat
     2581 acgttccatc tactgctaca aattcagcgc cgtatgatag cgcttgggct atctttacct
     2641 tttcaatgtc tgaagggcag aaaatataac agggcagttc tgcttttgca gcatgtgctg
     2701 cagttgcaga agctagattt cctgtagacg cacatcctac ggcttttaat ttggtctctt
     2761 tggctctcga gacagctacg ccagccggcc tatccttaaa tgaaaatgtc ggatttacag
     2821 aatcattttt gataaataag ttttttagtt ctcctatttg ttcagcaagc ccgcctgctt
     2881 tttgtaaagg agtgaaacca gcactcaagt ccacaatatt gcttttatca gcaataggta
     2941 agagttcaaa atatcgccaa tatgttttca catcccttga cgaaaaagtg ttcttattta
     3001 tatttaaaga aaaattgtaa acaacatcaa gtggaccaaa acattcttca catatatact
     3061 taaattgcgg agcatattct ttactacact ctctgcattt tagtgatcgt atactaccca
     3121 tacttttact ctcctctctc tcttgaattg taatagataa gcttctctaa gtgcaatttt
     3181 agtattacta tattttttca ataagaaaaa tttataatta ttaaattaaa ttttttgtga
     3241 tagttattat taacgtattt ttatattaaa aaatataaaa aaatcataaa tatcattaaa
     3301 ttttttattt ttctagaata ttatgaaaac aggttcgatt gcccgtatgg catgcaggat
     3361 tttgggattc tactaggtaa agcaaagcat cagagtcgca atctaccaat atttctttaa
     3421 caggttgaat gtgcccagac tcttcacctt tcatccatag cttgttatgc gatgtactcc
     3481 agaaccatgc atttcctgtt ttaatagtat tattaagcgc ttcttcgtta gcataagcaa
     3541 gcatgagtat atcttttgtc ttttgatctt gaactactac aggaagcaat ccatttcttt
     3601 ttgggaaatc gatgtctgat actgatttga tattcatatt gctatctctg catctccgtt
     3661 ataattaagt aaggttagaa taaatcagtt cttcatacaa aggcaatatt tggccatacg
     3721 tttcacgcaa aaatgataga attgtactac atattttctc tgtaaataac tataaaatat
     3781 tgtatttggg agagggagat tacgctcgtc ctaattaatc cagataattt ttatatcttt
     3841 agagattttg ctggctaaag aatttgggaa aaataagaaa agcaagagtc agtcctaact
     3901 atcaaaccca taaaaaaaca tatcatagaa cataatcata gtagataata aataaagtag
     3961 taaggataga tatgttggct ttaaatccaa agtatcgggt aaagattgga attcaggtaa
     4021 caaaagttat tgcatgatat atactttcaa tttttgaagt taaaaatata aatttacatt
     4081 aatagccaaa catttgtatg attagaaggt gcttattcca aattagcttc ttgtatgata
     4141 ttcaggataa atccactgca aaacttaatg atcgatagcg tttatagtcg tcaagcaaga
     4201 tctttgccaa attccttgta atatcggtta cacttagtaa tgctgtaatt ctattatctt
     4261 ct
//
LOCUS       DATAAS010000214         1716 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_231585, whole genome shotgun sequence.
ACCESSION   DATAAS010000214 DATAAS010000000
VERSION     DATAAS010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1716)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1716)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1716
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_231585"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1716)
                     /locus_tag="VHF08_03420"
     CDS             complement(<1..>1716)
                     /locus_tag="VHF08_03420"
                     /inference="COORDINATES: protein motif:HMM:NF025017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX2067729.1"
                     /translation="KGEFIAIFDADFIPPNWFLKKSIGHFSDPKVGLVQCRWGHVNEN
                     YSFLTEAQAISLDLHFLIEQKAKSLTHLFMNFNGTAGIWRTSCINDAGGWHTSTIVED
                     LDLSYRAQLKGWKCLLLEDVIVDAELPVQINAAKRQQFRWAKGSIQVAMKLLIDLTSD
                     KKIPIDTKIQAFIQLTRHIVHPLFLTQFIIFPMLLALDYKLYAISWFPITGILIYILM
                     GPATYLYIIRKIWGDKWKVKARQYFYLIFFATGISVNNTVAIFEALLIGKNEFLRTPK
                     FGVIKKGDNWKNKSYVLPFTKTTLLEIFFGLYGALAIFISIFSGNPIFVPILLIQTIG
                     FIYIAYLSIAHSSFNYNESNKRLKNVSQQDLFLPKQSSGIVEKTGVELAEKLNTKVYI
                     KTIKTTTNVKLIVEKSMKRGYYKLMLFGFLSILAFGAAVAYYGYESTIYPLDKAVGYL
                     SRAESAQSPEAVADYIKPVKNLLPNDGNPVWVFPNPRTDFGLIQKELDEMLLRAKSIS
                     SLELHSAAYNTGLADLRNSIKIIESNLIEATPYLYVSFTNIVLSAIWIAIILFIFALM
                     KRGRE"
BASE COUNT          562 a          306 c          277 g          571 t
ORIGIN      
        1 ttttctcttc ctcgcttcat cagagcaaaa ataaaaagaa taattgcaat ccagattgca
       61 cttagaacta tattagtgaa actaacgtaa agataaggag tcgcttcaat caagttagat
      121 tctattattt taatagaatt acgtagatct gccaatccag tattataagc agcgctatgt
      181 aactccaatg atgaaatgga tttggcacgt aaaagcattt catcaagctc cttttgaatc
      241 aagccaaaat ctgttcgtgg atttggaaat acccatactg gatttccatc attgggaagc
      301 aaatttttta ctggcttgat gtaatctgcc accgcttccg gtgattgggc agattctgct
      361 cttgataaat aacctactgc tttgtccaag ggataaattg tgctctcata tccataatag
      421 gctactgctg cgccaaaagc taaaatactc aaaaaaccaa acaacatgag tttataatat
      481 ccacgtttca tacttttttc aacaattagc ttaacgtttg tcgttgtttt tattgttttt
      541 atatatacct tggtatttaa tttttcagct agttctacac ctgtcttttc aacaattcct
      601 gacgactgtt ttggtagaaa tagatcttgc tgcgagacat tttttaatct tttatttgat
      661 tcattataat taaatgaaga atgagcgatg ctcagataag caatataaat gaaaccaatt
      721 gtttgaatta ataaaatagg tacaaatatc ggatttcctg agaatatgga aataaagatt
      781 gcaagagcac cgtatagccc aaaaaatatc tctagtaaag tagttttggt aaaaggtaga
      841 acatatgatt tatttttcca gttgtcgcct tttttgataa caccaaattt aggagtacgt
      901 aagaattcat tctttcctat caacaatgct tcaaatattg ctactgtatt gttaacagat
      961 attcctgtgg caaaaaaaat taaataaaaa tattgtctag cttttacttt ccatttatct
     1021 ccccagattt tccttattat atatagatat gtcgcagggc ccatcaagat atagattaga
     1081 ataccagtaa tcggaaacca acttatagca tataacttat aatctagtgc aagcagcatc
     1141 ggaaaaataa taaattgagt tagaaataat ggatgaacaa tgtgtctagt gagttgaatg
     1201 aatgcctgaa ttttggtatc tataggtatc tttttgtctg atgtaagatc tattagtaat
     1261 ttcatagcaa cctgtataga accttttgcc cacctaaact gctgtcgctt agctgcattg
     1321 atctgcactg gaagctctgc atcgacaatg acatcctcaa gtaaaagaca tttccaacct
     1381 ttaagctggg ctctataact aaggtcaaga tcttctacaa tagtacttgt atgccaacct
     1441 ccagcatcat taatacaaga agtcctccat attcctgcag ttccattaaa gttcatgaat
     1501 aaatgagtca aactttttgc tttttgttca atcaagaagt gtaagtcaag tgaaattgct
     1561 tgtgcttcag taaggaaaga ataattttcg ttaacgtgtc cccatctgca ttggactagc
     1621 cctactttag gatctgaaaa gtgacctatt gactttttca gaaaccagtt aggaggaatg
     1681 aaatctgcat cgaaaatagc tataaattct cccttc
//
LOCUS       DATAAS010000215         1924 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_780169, whole genome shotgun sequence.
ACCESSION   DATAAS010000215 DATAAS010000000
VERSION     DATAAS010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1924)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1924)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1924
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_780169"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            550..1215
                     /locus_tag="VHF08_03425"
     CDS             550..1215
                     /locus_tag="VHF08_03425"
                     /inference="COORDINATES: protein motif:HMM:NF015438.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0043546 - molybdopterin cofactor binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEX2067730.1"
                     /translation="MRVLSVNIGLPRQVVFNGQIVTTSIFKDPVKGPIMLRKLNLDGD
                     RQADLTVHGGLDKAAYSYPAEHYEYYWRKQFPNMYLTWGMFGENFNTEGLMEDDVNVG
                     DQFQIGSATKIIATQPRMPCYKLGVRFGRMDVIRRFMASGRPGIYFKVLQEGQVKAGD
                     KIKIIRKNENNVTVKDIVRLYIREGYNDEDIETMRRATKIEALPARWRYEFEQKIEQL
                     ERK"
     gene            1499..1690
                     /locus_tag="VHF08_03430"
     CDS             1499..1690
                     /locus_tag="VHF08_03430"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HEX2067731.1"
                     /translation="MFVLVCRETGLDCDYIIKGETKEEFLENGAEHAIYQHGMNADDI
                     YCDKIPVNFLCHSFSKINR"
BASE COUNT          743 a          297 c          346 g          538 t
ORIGIN      
        1 taatcaaaaa cacgaacaat accaactctt gaattctctt cgtatgtgtt tgggtagaga
       61 aagaagatag aaaatatctg caatgaaacg aaagactcga gtctattgta acaggaatta
      121 agagcagcaa taaggatata acaaaataaa agagaaagct aaacaaaata tgaaaagtgt
      181 ttgactaatg gtaaattact cttgaaattc gttactctcc agtaattgaa tcagtaagaa
      241 tgaacgctaa actatatatt ttcataaaat gtgatatttc aactactaat aatactagta
      301 ccacgtctca cgaatcaaac tctctttcgt taatgttgtc atgacgacag caacatcaac
      361 aatcatttaa taatagccat actgcattga tacttgaaga gcctgaaaag ctttacaatg
      421 acttaacaac aaaattgaca gataggctca tagcagcaac agctgcatct attaaggcat
      481 catcgttatc attaccatcg gctaatagtt acaatctttt ataaacaatg cattgaatct
      541 tgtataacaa tgagagtgct ttcagtcaat attgggcttc caagacaagt agtgtttaat
      601 gggcaaattg taactacttc tatattcaag gatccagtaa aaggcccaat tatgctacga
      661 aagcttaacc tggatggtga cagacaagca gatttaactg tccatggagg gttagacaag
      721 gcagcatatt cctatccagc agaacactat gaatactact ggcgtaaaca atttcctaat
      781 atgtatctta catggggaat gtttggggag aacttcaata ctgaaggatt aatggaagat
      841 gatgttaatg ttggtgatca gtttcaaatt ggatcagcta ctaagattat tgcaacacaa
      901 cctcgaatgc catgttataa acttggtgtc aggtttggac gtatggatgt aattagaaga
      961 ttcatggcaa gtggtcgccc aggtatttat tttaaggtat tgcaagaggg tcaagtcaaa
     1021 gcaggtgata agataaagat tataagaaaa aatgaaaata atgtcacagt aaaagacatt
     1081 gtacgtcttt atattagaga aggctacaac gacgaagaca ttgaaactat gagacgcgca
     1141 acaaaaatag aagctttacc agcaagatgg agatatgaat tcgagcaaaa gattgagcaa
     1201 ttagaaagaa aataaaatca tacatataac aatagtaatg aaatcattat tattactata
     1261 tgaaaaggat cttcattaat caatagcagc atatatactg tatcatagac ggtgcagcaa
     1321 aggcttgaca tatgcagctg tagattagga agaaagaata atcctcaaat agacaagtat
     1381 atcttcctaa aactaattta attctatctc ttaaatatat atgtcacatg tagaatctca
     1441 gttaaagagg aagaaagaga tttaagaatc atatatcatg aagtaagatt gcattcaaat
     1501 gtttgtttta gtatgccgcg aaacaggctt ggactgtgat tatatcataa aaggtgagac
     1561 aaaagaagaa ttcttagaaa atggagcaga gcatgctata tatcaacatg gaatgaatgc
     1621 tgatgacata tactgtgaca aaattcctgt taatttctta tgtcattctt ttagcaagat
     1681 aaacagatag atttttcgat attaacgaat ttagaataat ctggtagctc aagaagaagg
     1741 tacgtcagaa ttactgagat ttacaataag acatagacta aatcaggttt ataatcagcc
     1801 tgaatatcat ctactcgtaa agaacaaaaa caaccgtagc aacaacttat taatgaagct
     1861 gctctacggc ccgatgctgc aaatcatcat aggaaccaaa gttatatcaa acatcaaatt
     1921 tacg
//
LOCUS       DATAAS010000216         2368 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_781835, whole genome shotgun sequence.
ACCESSION   DATAAS010000216 DATAAS010000000
VERSION     DATAAS010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2368)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2368)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2368
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_781835"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            252..440
                     /locus_tag="VHF08_03435"
     CDS             252..440
                     /locus_tag="VHF08_03435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067732.1"
                     /translation="MEEVLEEEGVDNSEDEQTEPQTEEEEDDVSEIIQKLTPILGSAK
                     ERGFTVNELEIEREKEEE"
     gene            complement(2132..2314)
                     /locus_tag="VHF08_03440"
     CDS             complement(2132..2314)
                     /locus_tag="VHF08_03440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067733.1"
                     /translation="MADDDDNATTTFICKICERIFQDEFSILKITTFKKNGYWKHIVN
                     SVFEAGRMKLSRQKPK"
BASE COUNT          782 a          391 c          350 g          845 t
ORIGIN      
        1 agtaaatcct tgttcttttg cagaacctaa tattggagtg agcttttgta ttttctcaga
       61 tacatcatct tcttcttctg ttggtggttc tgtctgttct tcctctgcgt tatccactgc
      121 ctcctctaat acttcttctt acacttcctc attatgttgt cttcatcaac tgtttctgct
      181 gatacttcaa cataacgagt tattttacca acagagtcag ctgaaatagt taatgaagac
      241 aacataatga agtggaagaa gtattagagg aggaaggagt agataactca gaggatgaac
      301 agacagaacc acaaacagaa gaagaagaag atgatgtatc tgagattata caaaagctca
      361 ctccaatatt aggttctgca aaagaacgag ggtttactgt caatgaatta gaaatcgaaa
      421 gagaaaagga agaggaataa atattttagt atgaaataaa agatctgact tttgatggga
      481 ataacaatca gaattatttt tctttcgttc ttgttactct atctctacta catactacct
      541 tgttgtttaa tattaactac ataatttgct accaagttcg gttctgttca ttctaatgtt
      601 attctaaatt gttatttaaa ttcgttgata agaaagtaaa attatgaata aactagattc
      661 tgatattgaa gatgatattc aaagtaaaag gtaaaagaaa aacatcataa tttgctaaag
      721 gaaaaaattt tcagatttta tggatattcc ataaatagtt gataaatgtg atgatgttga
      781 agtgacatta attttagacc cattccttac cttagtatat agctgattgg aggacgataa
      841 tcatcttagc agaagagcag tagcaagagg aatcaactga agagaaaaag attcaactat
      901 ctattggcat atatggactc atattataaa ttatattaca cttccagtaa gaggtatcta
      961 tgcataatca ggcgcaggag ctgcacctca aatcaaataa taatattata tcaaattagc
     1021 agttattgta ttatctattg tatttttaac tggaatgtct cttgtacttg taaaacaaat
     1081 tagatgatga aatatcttca ctaagagatg gtaacgatac gatagtctac aacttaccac
     1141 caatagaaga agataaagaa agagaggtgc gttttccata ttacctttcc aacaccatca
     1201 gcaccagatg gaacactact tggtttggct acacatttat tgagattaat ttttgaccag
     1261 gaaaaattat tggattagct gctttggtcg tattaacatg ccatttatcc atcacttatc
     1321 atggcagtaa tttcactact ttaacatcct atatattctc gaatctcaat attcttttgc
     1381 tcttctctgt aaagtatttt ctctttccag tttaaatttc gttaattaat ctagtattca
     1441 taaatactta ataatactga tatgttttta ttttgtagta gaggattaca gatacggcgt
     1501 tctttcgatg aaagtgacgc aaaacgggtt tatcaatcac cccaatcttg ataaactctt
     1561 ctgctgatcc tctactacac ttaagattgc tattagtaga gatgaattat aagagttatc
     1621 atcatacctt atttttcttc tctaaatcaa tttgttagta tcctaaaagc agaatatata
     1681 ttattttata actaaaacag gagcaaaaag aagctagtag gcataaatga gactacgagc
     1741 tagcttaata ttactattgt tatgttaatt ggtatttcga catactatag tcaatgtaga
     1801 ccatactatt agagatatat attataaaac atatatcatc agaatttaca tcctttgtct
     1861 atcattgatg atcattaata gacaacagta acttcattca tggaaactaa tttcttaggt
     1921 tagcgaaacc aatacgccaa tcaacttaaa atatcagaga tgttcttcta acgtaaattt
     1981 atattattgt tattatatgc tgcgcctttt tgttattctg ttctctgcca aatcagcttt
     2041 atcattctat cttatcttta aacggtttct tgtcatatct atacttcagg catacttcta
     2101 gcttgtcctt attactctcc tatctctttt actatttcgg cttttgcctt gatagtttca
     2161 ttctcccggc ttcaaataca ctattgacaa tatgtttcca gtaaccgttc tttttgaatg
     2221 ttgtaatctt caatatgcta aattcatctt gaaatatcct ttcacagatt ttgcagataa
     2281 atgttgtagt agcattatca tcatcatcag ccatttgata atgcgtaacc cactctctgt
     2341 tgttaattat ttaacaactt catcatta
//
LOCUS       DATAAS010000217         5136 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1391343, whole genome shotgun sequence.
ACCESSION   DATAAS010000217 DATAAS010000000
VERSION     DATAAS010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5136)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5136)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5136
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1391343"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..213
                     /locus_tag="VHF08_03445"
     CDS             <1..213
                     /locus_tag="VHF08_03445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067734.1"
                     /translation="AGASLHSLNGNKAPYLITTEDNVYGFLNIEITANDAETTMLVGT
                     FYSNNGDGGGEAIDQFTITKSLAEDS"
     gene            complement(699..1085)
                     /locus_tag="VHF08_03450"
     CDS             complement(699..1085)
                     /locus_tag="VHF08_03450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067735.1"
                     /translation="MTSSSSSKIPSSSSPSPTKKADISTKKGTSGKVAAAFLAVCISV
                     IILGILSYFRTQLPWLEIYKPIAVYGGILVYSYVICGVLWAGLYLVLRQKENIGNLKV
                     WITIFIISIIASTILIEASLKWTRLW"
     gene            complement(1100..1699)
                     /locus_tag="VHF08_03455"
     CDS             complement(1100..1699)
                     /locus_tag="VHF08_03455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067736.1"
                     /translation="MLPTTKTILDTKSLLISTTTGLVIVSIAVLILGLLVDKKIESIM
                     ILHDFYIVLAIMIGAGFIGVLLFGNNNDVNQRDSAVNILKYISIIATISVFAIVITGT
                     IGYIEYRITEIHSAKSIIIRTFPFAHNVMFETMEYAGLIGPLWSTLITYITFHYREQI
                     FTNIAARNSLVIMISLAIIYSLIISLTGIVPTKIASVQG"
     gene            2189..2353
                     /locus_tag="VHF08_03460"
     CDS             2189..2353
                     /locus_tag="VHF08_03460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067737.1"
                     /translation="MITQRGSEGQAKGLFSELEGIDIDSVCNVYVADIVIFVLSIQTI
                     IAITQMPSNE"
     gene            complement(2506..2997)
                     /locus_tag="VHF08_03465"
     CDS             complement(2506..2997)
                     /locus_tag="VHF08_03465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent transcriptional regulator"
                     /protein_id="HEX2067738.1"
                     /translation="MSEVTTINNRRKSSNRKEEEQEELYIDTAEAEHIEMYLKAIWSI
                     SERKQEVKVSSIAKLLNVKQPSVVQMLHKLNDANLVEYKKGNIVELTTEGDRIGKQMI
                     RNTRLLEVMMKDALRIEIDEEMVCGIEHHMKKKFSDALCTLLKHPRKCPHGHNIPYGQ
                     CCR"
     gene            complement(3180..3548)
                     /locus_tag="VHF08_03470"
     CDS             complement(3180..3548)
                     /locus_tag="VHF08_03470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067739.1"
                     /translation="MRNDTIVFNESQVAIPLLQDIVDETTFKIILSTIDVAKTVFQIC
                     DENKTPISSTYRKIRKLQYAGLVFIEKILIDDRGKKTIFYKSKIKTLEFSLKKDGILL
                     QLHKNDDNNKHLINSLGCKM"
     gene            complement(3651..>5136)
                     /locus_tag="VHF08_03475"
     CDS             complement(3651..>5136)
                     /locus_tag="VHF08_03475"
                     /inference="COORDINATES: protein motif:HMM:NF015213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0033573 - high-affinity iron permease
                     complex [Evidence IEA];
                     GO_function: GO:0005381 - iron ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034755 - iron ion transmembrane transport
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FTR1 family protein"
                     /protein_id="HEX2067740.1"
                     /translation="DIEIDMREELRQMLRERESPENLESFINGILEKIDIAEDLLKND
                     PSFNQLQESSNTSANSGVTAITDIQDLSKGFGVYTGERKEMGEAQDSAKEAVRNNIDQ
                     IRKKLDEMLLQYKSEKYNEALLTSRSAYLDSYENIEIPLRPIDPDFTLEMEIKFAELR
                     NLIQSQSPYEEILKKTAEIKNGLDESERLVSGTGIIAPTIAFSTSFSIIFREGLESAL
                     IIGAILTYLEASRNQRFKKHIYYGIIIAIGATAVTWFVAQFIIEISGASRELIEAIAG
                     ISAVAVLFWVSFWVLNKIETKKWIEFVKAKVWKATMTGSIMVFVMLSFFTVYREGFET
                     VLFYQAMLSFAKYMEWYVLAGMVLGLTIIVGIVFLIRKLGKKLPLRVLFGLTMGVGAY
                     MSIAFMGNAIREFQEVGYISTTHLIGVIPRLDINLATMTGIHPTLETIFAQIILLSVY
                     LVGSLYILIIQPRMKKVIEASRKSMADLEERRRSSSSSSPDSYE"
BASE COUNT         1608 a          892 c          774 g         1862 t
ORIGIN      
        1 gctggggcaa gcctccacag tctcaacgga aataaagctc cttatctgat aactaccgaa
       61 gacaatgtat atggctttct aaatatagag attacagcaa atgatgccga aacaacaatg
      121 cttgttggta cattctatag caataacggt gatggcggtg gagaagctat agaccaattc
      181 acaattacaa aatcattagc agaggactcc tagttcttat cattaccacc accagaagta
      241 cggtacaaga aactgagaac tttctagagt agtataataa actatagatg agatatggtc
      301 atgtatcagg tttttctaga aaaaacgtgt taagggtaag ttcaatgtat gctaacatta
      361 taatttagat taattaactt tcccaatcaa agaagaagaa ttgcagaagt aaccaaaatt
      421 tcctacctta tcaaatatat gacaaaattt ttgacctttt tcaaataacc agaatcaaat
      481 tctttgccta tttgtacatc atcattattt tctttagctg tttcagaggt aactgtgtga
      541 atattactat gttcatttat ccttgttatt gtatctccaa ctttaatctc aacaggattt
      601 tgtctaaatg aattaccacc tctttcttct attattatta ggactttgtt ctgtttgtat
      661 ttgtgctatt gcagcagcag tagctggtgc tctttttctt accaaagtct agtccacttt
      721 aagcttgctt caatgagaat agtagaagct atgattgata ttatgaatat ggttatccaa
      781 accttgagat ttccgatgtt ctccttctgt ctcaatacta aataaagtcc cgcccatagt
      841 actccacaaa taacataact ataaacaagt atccctccgt atactgcaat tggtttgtaa
      901 atctcaagcc aaggtaattg tgttctgaaa tatgataaga ttccaagtat tattacagat
      961 atacaaacag ctagaaatgc agcagcaacc ttccctgatg tacctttttt ggtgctaatg
     1021 tctgcttttt ttgttggaga tggtgatgat gacgagggta tttttgatga tgatgatgat
     1081 gtcatacctt tttatcactt tacccttgaa cagatgctat ctttgttgga acaattcctg
     1141 ttagcgatat aataagtgaa tatattattg ccagggatat cattattact aatgaatttc
     1201 ttgcagcaat gtttgtgaat atttgttctc tgtaatgaaa agttatgtaa gtaataagag
     1261 tactccataa tggtccaatt aatccagcat attccattgt ttcaaacata acattatgag
     1321 caaatggaaa tgttcttatt attattgatt tggcgctgtg tatctctgtt attctatatt
     1381 caatgtatcc aattgtacca gtaattacaa ttgcaaagac agaaatggta gctattattg
     1441 agatgtattt taaaatattt actgctgaat ctctttgatt tacatcatta ttatttccaa
     1501 ataatagtac tccaataaag ccagctccta tcattattgc taatactata taaaagtcat
     1561 gtaaaatcat tatgctttca atttttttat ctactagcag tccaagaatt aaaactgcaa
     1621 tagaaactat aactaatcca gtagtagttg agattaacaa tgactttgta tctaatattg
     1681 tttttgtagt tggtaacatt taataaagaa acaatttttt ttattaaata taaagtgaat
     1741 tacgattctc ggttttgatt ctataaaatg ggaataatac aaatactttg gtagcatatg
     1801 gtttcttgct aatcactttc tttttcttta tattttatag gcatactata ctatttagaa
     1861 aatattgcat gagaaggaca gaaaatgaca taagaagaat gtcacttttg ccatatccag
     1921 gaggcttcaa aacaaataga agaggaaata tcttcaaaag tattctatat ccaagaaatg
     1981 gaagactgtc ctctttaatg agttaataat aattttcttg tatcaattaa ttataaaact
     2041 attaagattg acagcccaaa atgcatacac gatccctttt tttctgcagt atctgcatcg
     2101 gtaaagtatt ttcattaact ttggtatttt taccgggtca ttactgctgt tagaactaca
     2161 aatctgtggg cataacagga acataatatt gattacacag cggggctcag aaggtcaagc
     2221 taagggcctg ttttcagaac tagaaggcat agatatagat tctgtatgta atgtatacgt
     2281 agccgatata gtaattttcg tattaagtat tcagaccatc atagctataa ctcaaatgcc
     2341 ttctaacgag taacaatatt ttattgctca aatataaggc aacagaaata tagtaatcca
     2401 caatgcattt caataaacta acgctagagc cttgataata tatgaagtat tctgatattg
     2461 tttatctata cttcttatag ttagagttta gagttggtgg tatcattatc tacaacactg
     2521 tccataagga atattatgtc catggggaca tttccttgga tgctttaata gagtacataa
     2581 tgcatcacta aatttctttt tcatatgatg ttcaatacca cagaccattt cttcatcaat
     2641 ttctatcctt aaggcatcct tcatcattac ttcaagcaac ctagtatttc gaatcatctg
     2701 ttttcctatt ctatcgcctt cggtggtcag ttctactata ttgccctttt tatattcaac
     2761 taaattagca tcatttaact tatggagcat ctggactact gatggctgct tcacatttag
     2821 tagtttagca atagagctaa ctttgacttc ttgttttctt tcgctaattg accatattgc
     2881 ctttaggtac atttctatat gttcagcttc ggctgtgtca atgtaaagtt cttcttgttc
     2941 ttcttctttt ctgttactag atttccttct attatttatg gtcgtgactt cagacattat
     3001 ttgtattaat attaactgta attatctatt aatcttatta tccgtcttct atgatagatt
     3061 tgaaaactga gtcaatatta aagttgacta atgatatatt ttatacctat ttgttgatag
     3121 ctgcatataa agttgatcat tatggttggg aagtattgaa agattttatt attcattatt
     3181 tacattttac aacctaatga attaatcaag tgcttattat tatcatcatt tttgtgaagc
     3241 tgcaacagta tgccatcttt tttcaaacta aactctaaag tttttatctt actcttatag
     3301 aaaatagtct ttttacccct atcgtcaatc aggatttttt cgataaatac tagaccagca
     3361 tactgtagtt ttctaatctt cctgtaagta gagcttatgg gtgtcttatt ctcgtcacat
     3421 atttgaaata ctgtttttgc tacgtcaata gtggataaaa ttatcttaaa tgtagtttca
     3481 tctacaatgt cttgtagtag aggtattgct acttggctct cattgaagac aatagtatca
     3541 tttctcattg tcatattgat taggtatgcc taattaggtt tgcctaatat ttaaacaatc
     3601 ttaattatat aataatctct ctttatctct aaaatatgat catatcttgt ttattcatag
     3661 gaatcaggag aagagctgct gctgcttctt cttctctcct ctaaatctgc catagatttt
     3721 cttgaagctt ctataacttt cttcattcgt ggttgtatta tcaatatgta aagcgatcct
     3781 actaaatata cagacaataa gataatctga gcaaatattg tttcaagtgt tggatgaata
     3841 ccagtcattg ttgcaagatt aatatcaaga cgaggtatta cacctattaa atgggttgta
     3901 gaaatgtacc ctacttcttg gaattcccgt attgcgttac ccataaatgc tattgacata
     3961 taagctccaa ctcccatagt taatccaaac agaacacgca gaggcaattt tttacctaac
     4021 tttcttataa gaaatactat tcccactatt attgtaaggc ccaataccat tcctgctaaa
     4081 acataccatt ccatgtattt agcaaaagat aacattgcct gataaaaaag aacagtttca
     4141 aatccttctc tataaacggt aaagaatgag agcattacaa ataccattat actaccagtc
     4201 attgttgctt tccagacctt tgctttgaca aattcaatcc atttctttgt ctcaatttta
     4261 ttcagaaccc agaagctaac ccaaaataat actgctactg cagatattcc tgcaatagct
     4321 tcaatcaatt ctctactagc accagatatc tcgataataa attgagcaac aaaccatgta
     4381 acagcagtag caccaatagc aattattatt ccataataga tatgcttctt gaaacgttga
     4441 tttctagaag cttcaagata tgtaagtatt gcgccgatga tcaatgcgga ttccaaacct
     4501 tctctaaaga ttatggaaaa tgatgtcgag aatgctattg ttggagcgat tataccagta
     4561 ccagagacaa gccgttcaga ttcatctaga ccatttttaa tttctgctgt cttctttaga
     4621 atttcttcat atggtgactg tgattgaata aggtttcgta attctgcaaa ctttatttcc
     4681 atttcaagtg taaaatctgg gtctatcggt cgtaaaggaa tctcgatatt ttcatagcta
     4741 tctaagtatg cagagcgaga ggttaataga gcttcattat atttttctga tttgtattga
     4801 agaagcattt cgtcaagctt ctttcttatc tgatcgatgt tgtttcggac agcctccttt
     4861 gcagaatcct gtgcttcgcc catttctttt ctttcacctg tatacactcc aaaacccttg
     4921 ctcagatctt gaatatcagt aatagctgtt acccctgaat tagcactagt gttactgctt
     4981 tcttgtaact gattaaaaga aggatcgttt ttcaaaagat cttctgcaat atcaattttt
     5041 tcaagaattc cattgataaa agactctaaa ttttcaggag attctctttc tctgagcatt
     5101 tgtcttagct cctctctcat gtctatttcg atgtca
//
LOCUS       DATAAS010000218         2971 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_782230, whole genome shotgun sequence.
ACCESSION   DATAAS010000218 DATAAS010000000
VERSION     DATAAS010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2971)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2971)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2971
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_782230"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1139)
                     /locus_tag="VHF08_03480"
     CDS             complement(<1..1139)
                     /locus_tag="VHF08_03480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HEX2067741.1"
                     /translation="MDTVDEKKISPTNGYSNLEQNFPPGFKIEREQDLDKYITLSIGP
                     QHPGSGHMRIVVVVDGDIIVHADPDIGYVHRGEEKMSESRTFVQNVPHIERPVIHDSS
                     GILYSYCLAVEELLGIQVPERGQYLRVIMAEIDRIHYTLYWLAILGIFLGHSTMFMWP
                     TADRELFVDLGDMASGQRITHAYLVPGGVRSDIPSEFKTKAFEFMDYFEKRLNEYDKI
                     FYNNPLFRERSEGIGILRRQDAIDFGTTGSVTRASGINYDVRKKEPYEIYDKMDFEVP
                     TMNSGDSFARSILPIYDLRQSIQIIRQCLKDIPEGSFRSKLPPTPKGPAGESYRRVES
                     GRGALGHYIVSDGSPKAYRHKISAPSFRNLLVLPYLLKGARLADLP"
     gene            1629..2816
                     /locus_tag="VHF08_03485"
     CDS             1629..2816
                     /locus_tag="VHF08_03485"
                     /inference="COORDINATES: protein motif:HMM:NF040322.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067742.1"
                     /translation="MDSNIKVAFWNLGNLFDTSSSSVIGSDLEFTPERGWNDAAKDKK
                     IENLANVINSLHNNQGPDLLGLCEIENEELAKKLIEKMGKQDIYEVAQYTDSPDIRGI
                     DTCLIYSKKVFKFIDAKSHNIYFRYPTRDIFQVNLSVINNNNSELNVLVNHWPSRTGG
                     RFETEPLRIAVAENCARAVESILKVSLDYLKEMPDNLKEDEESLAKLNQKWNKNVLVM
                     GDLNDNPFDRSILNYLRATPDKNRLIQWKEIFEHPNLKKWPTNKQTDKHNYLYQPSFL
                     YNCMWNLIPDGTIFFDGGLDLFDQFIISRGLLNGEQGLKMDLNEIKIDKSTKMSNHIL
                     AGNFEPIGQENKIHPIFKESPMSFEYIKKKANGEPEKVQVGRDPLTGFSDHFPIQSVI
                     NIL"
BASE COUNT         1033 a          509 c          494 g          935 t
ORIGIN      
        1 ggtaaatcag ctaatcttgc tccttttaat aaatacggca gcacaagcaa atttctaaat
       61 gatggggcac ttatcttgtg tctgtatgct ttaggactac catcgctcac aatatagtgc
      121 cctaatgctc ctcttccgga ttcaactctt ctataagatt caccagcagg accttttggc
      181 gtaggaggaa gtttagacct gaatgagcct tctgggatat cttttaaaca ttgacgtata
      241 atctggatac tttgacgcaa atcatagatt ggaagaatac ttcttgcaaa agaatcgcct
      301 gaattcattg tagggacttc aaaatccatc ttgtcataga tttcataagg ctcttttttt
      361 cttacatcat aatttatccc agaagccctt gtcacagaac cagtagtacc aaaatctatg
      421 gcatcttgtc ttctcaaaat tcctatccct tcacttcgtt ccctaaacaa tggattattg
      481 taaaatatct tatcatattc atttaatctc ttctcaaaat agtccataaa ctcaaatgcc
      541 ttagttttga attcggatgg aatatcgctg cggacgcctc caggtacaag atatgcatgt
      601 gtgattcttt gtccagaagc catatctccg aggtctacaa acaactctct atcagctgta
      661 ggccacataa acattgtaga atgacctaag aaaattccaa gtattgctaa ccaatacaat
      721 gtataatgta tcctgtctat ctcagccatt attacacgaa gatactgtcc tctttcaggt
      781 acttgtatac caagaagttc ttcaacagct agacaataag aatagagaat gccacttgag
      841 tcatgaataa caggtctttc aatatgtggt acattttgca caaaggttct ggattctgac
      901 attttctctt cacctcgatg gacataacct atatcgggat cagcatgtac tattatatct
      961 ccatctacta caacaactat tcgcatatgt ccagaaccag gatgttgtgg gcctatgctc
     1021 aaagtgatat atttatccaa atcttgttct ctctcaattt taaatcctgg cgggaagttc
     1081 tgttctagat ttgaatagcc attagtggga gatatttttt tttcatctac agtatccatt
     1141 gatatatcta attgcagtta gccattataa gataaatgaa ttgtaactat aatatctagc
     1201 ctgtcgcata acttacatga aatgggactt gtttatcatt tgcattaact ttgcatattt
     1261 actaaagcaa taacaaaaaa taatgactga actaccagaa tgagattctt acatatacga
     1321 tcccaattga gaagggatct atttatttct gggacaaacc agatcataga aatgaatgct
     1381 ccttggtatg tagaggatat attcacgtaa catcatataa tttataatat tgtctagagc
     1441 attggacaca tttagaaagc tgcaactgca tatcctaaca aatattgaaa taacacaaga
     1501 ctatgagaga ctttttaact ctaatttatg taaagttttc agttagttta tgaaaagaaa
     1561 aaaattgcac cttatagtaa acttccactt taacaataca ttatattaca taaattagca
     1621 aacgcaatat ggatagtaat attaaagttg cattctggaa tttgggtaat ctatttgata
     1681 cttcatcttc gtcagtgatt ggctcagacc ttgaatttac tccagaaaga ggttggaatg
     1741 atgcagctaa ggataaaaaa attgagaatt tagctaatgt cattaattca ttacataaca
     1801 atcaaggtcc tgatttgtta ggattgtgtg aaattgaaaa tgaagagtta gccaaaaaac
     1861 tcatagaaaa aatgggtaaa caggatattt atgaggttgc tcaatataca gatagtccgg
     1921 acattagagg aatagatacc tgccttattt attccaaaaa ggttttcaaa tttattgatg
     1981 caaaaagtca caacatctat tttagatatc caacgcgtga tatctttcaa gtaaatctat
     2041 cagtgataaa taataacaat tctgaattaa atgtgctagt aaatcattgg ccctcaagga
     2101 ctggaggtcg ctttgaaaca gaacctctca gaatagcagt tgctgaaaat tgtgcaagag
     2161 cagtggagag catattaaaa gtttccttag actacctgaa agaaatgccg gataatctta
     2221 aagaagacga agagtcatta gctaaactaa atcaaaaatg gaataagaat gttctagtta
     2281 tgggggattt gaatgataat ccttttgata gaagtatctt aaattattta cgggctactc
     2341 cggataaaaa tcgattgatt caatggaaag aaatatttga acatcctaat ttgaaaaaat
     2401 ggccgactaa taagcagact gataagcata actatcttta tcaaccttca tttttgtata
     2461 attgtatgtg gaaccttatt ccagatggta ctatattctt tgacggaggc ttagatctat
     2521 ttgaccaatt tataatatca agaggattac tcaatggaga acaaggatta aaaatggatt
     2581 tgaatgagat aaaaatcgac aagtcaacta aaatgtccaa ccacattctt gcaggaaatt
     2641 ttgaacctat tggccaagaa aataaaattc atccaatatt caaagaaagc ccaatgtcat
     2701 ttgaatatat caagaagaag gctaacggag agccagaaaa ggttcaagtt ggtagagatc
     2761 cattgactgg ctttagtgat catttcccta ttcaatcagt aataaatata ctataatgat
     2821 aacttttgaa atcatactgc taagaattga ttatatgagg agtctcagca attactcact
     2881 gtcttttcta tgtatcttag tgtaacaaaa taaaataaaa gacttttcta gagagaaagc
     2941 aaaagagctt agaatgtcgc caataatata a
//
LOCUS       DATAAS010000219         1565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_783866, whole genome shotgun sequence.
ACCESSION   DATAAS010000219 DATAAS010000000
VERSION     DATAAS010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1565
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_783866"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            799..>1565
                     /locus_tag="VHF08_03490"
     CDS             799..>1565
                     /locus_tag="VHF08_03490"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEX2067743.1"
                     /translation="MLTFGNGPKSQYTEAKPILDKYGFKASFFVVCNWISNSDEDNSH
                     MTWQEIETLHNEGHDIGAKSLNHKDLTTLSASELDFEVAQSKKCLADHNIDARVFGTP
                     YGKGWDNPTVIDTIAKYYDFAITGFSKLMYLNCDGWNGQQEEVDNYYISNVQTDCRTY
                     SDDGTLTYANRYSIKEWSHSNADKEYFGNDQIIFEEFVKAVNSQDEFNKDGTIRAIPI
                     IAYHDLDHNITPDSTSVNLFDAEMKYLYDNGFTVLTMA"
BASE COUNT          553 a          238 c          256 g          518 t
ORIGIN      
        1 tgtaaaggta taagatcttt ttatttgtca tctcctcttc ctctatcttc atcttctcta
       61 tttctctctg atggtaacaa tgatctatct aatgctttat agttattaac agacagatag
      121 acagacagac cttcaatgat ggggtgtggt agaagagccg tcgattcctc ttttctgata
      181 atttaactat taaatgacta tttattatca ttccactgaa caaacaactc ttatcataag
      241 attaagattc tctaaattga gaatcgatta cttatttaaa tgaaataaac aaatcattct
      301 tttaaaccac ttgattttat cagactctac atcgtactac tacataagat tgtgcagatt
      361 aaaaatgaga ttatagtcat gaagctccac tttagatatc atcatattat cttgtgtaat
      421 aaaaaagaaa aaataagaaa tgcaaatatg tcgagattgg ttactactca aaggaatgtc
      481 taaaagaata catgttctac tgtctttctt cagttttctt cctaataata gtagctgtga
      541 taattttatt atcaagtaaa gaagtactat tgtaagatca ttctgtatat gcttaaatct
      601 ttctctcaaa tagtataaat atcccttctt taatgtaaag catttggtgt tataaaaata
      661 cagaattatg cacatttagt ttcgactatt attgttattg catttctaac tattacaatc
      721 agattttctt taccaattac gacctatagt cagctagaga ttcaacaaag agagagtagt
      781 agtattaaca aagtagttat tctaactttt ggcaatggac caaagagcca atatactgaa
      841 gccaagccaa ttttagacaa atatggattt aaggccagtt tctttgtggt atgcaactgg
      901 atttcaaatt cagatgaaga taactcacat atgacatggc aagaaataga gacattacat
      961 aatgaaggac atgatatagg agcaaagtct ttgaaccata aagaccttac tacactatct
     1021 gctagtgaat tggactttga agtagcacaa tcaaaaaaat gcttagctga tcacaatatc
     1081 gatgccagag tttttggtac accttacggc aaaggatggg ataacccaac tgtgattgat
     1141 actattgcaa aatattatga ttttgctatt actggttttt ctaaactgat gtacttgaat
     1201 tgcgatggat ggaatgggca gcaggaggaa gtagacaact actacatatc aaatgtacag
     1261 actgattgta gaacatattc tgatgatggt acgttgacct atgcaaatag atactccatc
     1321 aaagaatgga gtcatagtaa tgcagataaa gaatactttg gtaatgatca gataatattt
     1381 gaagagtttg tgaaagctgt caatagccaa gacgaattca ataaagatgg aactataagg
     1441 gccattccta taatagcata tcatgatcta gatcataata taacacctga tagtactagt
     1501 gtgaatttat ttgatgcaga aatgaaatat ttgtatgata atggttttac agtacttact
     1561 atggc
//
LOCUS       DATAAS010000220         3489 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3475624, whole genome shotgun sequence.
ACCESSION   DATAAS010000220 DATAAS010000000
VERSION     DATAAS010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3489)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3489)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3489
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3475624"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            238..1305
                     /locus_tag="VHF08_03495"
     CDS             238..1305
                     /locus_tag="VHF08_03495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067744.1"
                     /translation="MYCYNIHDIVKVKSEVSLYELEYFTSDEFADADLVINVKNTIPS
                     GLHFKRTLIPDPNPEYHKVKYSEHFGRFGAQFSIEFTDKVSIAVNKLITSSRHVIYVN
                     LVEPILRFLLISKGFVLLHSACIDIKGHGLLFSAPPDTGKTTTVLKCIKNGFSFLSDD
                     MTIVRLPNEAMCFPKAMTISAHTYKTATTVSDNDHDKIQYKLRSLVHSKKGRQFMHKL
                     ANYNVPIFTLNTVGQAIIKPPKFKIENLLQSVTIQEKTRVKSLFFLERGGDEQIEEVP
                     TKVALKKAIENSDDAFLFPPYADLIHHINIGGKTAKELLEQEKNMLEKFLAEVKCLII
                     KSNKRAWYQMVVETAQPKVNK"
     gene            1380..2534
                     /locus_tag="VHF08_03500"
     CDS             1380..2534
                     /locus_tag="VHF08_03500"
                     /inference="COORDINATES: protein motif:HMM:NF024832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligosaccharide flippase family protein"
                     /protein_id="HEX2067745.1"
                     /translation="MRLRFLSSHKGLIYITLGNLVGAAATGAFWLLLALIQNADEYGK
                     TNYEISIASLAASAALLGLNTTVTTYVAKGSSKINVQANQLILISSGIAAIIVAFFNW
                     ILGFFVIGMAFWMMSTYELLGRKMYKQYAFVNIGARASQLFVSILLYYFLGITGIAIG
                     FIISFLIFSQRYFISTKEFSRDFSEVKNKIKFSLNIYSFNMSNAFLLYFDKLIIAPLF
                     GYAVLGYYQLGFQFLLFLGMIPISFYQYLIPEESSGLKKTRVRFLGLLVSVGLTAILF
                     LSSPWILQYLFPRYMASLDSMRIMSIGIIPMMIVWTLNSKFLNIGDTKYVLFGSAIYL
                     TIQIGLIFYLGSTMNVIGLALAVVLALIAQASFLFISDKHLQQKNNKHTQ"
     gene            complement(3057..>3489)
                     /locus_tag="VHF08_03505"
     CDS             complement(3057..>3489)
                     /locus_tag="VHF08_03505"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067746.1"
                     /translation="KTNVVFKVSLYGLPSPDTYQGDRLNTFIQAAQLAEVPLYFGEWN
                     NVVRERSINEEGEVVTQISPELSNINQTEANLIVKTFKDTNAWGMAYWQWNIDVHPIA
                     TYNLIRGADATGVPQTTNYFDILKNAYSSVYPEITSRNATS"
BASE COUNT         1172 a          576 c          591 g         1150 t
ORIGIN      
        1 acaaaccgtt ctaattaggc ctaataaacc agtggagtaa ataagaaatg ctaggcgttt
       61 tcacataatt gaatcccttg catatttcac aatatttaga tagtatggtg tacggaaaaa
      121 tgtcaagtag aaaatatggg aagagaatgc agtgtatatc tatattagat gtatatctga
      181 tataaaatat cagctaagag tttatatgtt atccaaaaca ataggatgtg aaattgtttg
      241 tattgttata atattcatga tatagttaaa gttaaatcag aagtatcgtt atatgagctt
      301 gaatatttta catcagatga gttcgctgat gctgatcttg tcatcaatgt aaaaaacact
      361 ataccttctg gattacattt taaaagaaca ctaattccag atcccaatcc agagtatcac
      421 aaagtaaagt attctgagca ctttggacgt tttggtgcac agttttcaat tgaattcaca
      481 gataaagtta gtattgctgt aaataaactg ataacctcat ctaggcatgt catatacgta
      541 aacttagtag agcctatctt gcgtttttta ctgatatcaa agggttttgt tcttcttcac
      601 tctgcctgta ttgacattaa gggacatggt cttctttttt ctgcacctcc agatacgggg
      661 aagactacaa ccgtattaaa gtgcatcaaa aatggctttt cttttttatc tgacgatatg
      721 acaatagtgc gtttgccaaa tgaagccatg tgttttccaa aggccatgac tattagtgct
      781 catacataca aaacagctac gacagtctca gataatgatc atgataaaat acagtataaa
      841 ttacgtagtt tagtccattc aaaaaagggc agacaattta tgcataaact tgccaactat
      901 aatgtaccaa tatttacact aaatactgta ggacaggcaa taattaaacc tcccaaattt
      961 aagatagaaa acctattaca gtcagtcacc attcaggaga agactagagt taaaagtttg
     1021 tttttcctgg aaagaggtgg tgatgagcaa atagaagagg ttccaacaaa ggttgcatta
     1081 aagaaagcaa tagagaatag tgatgacgca tttctcttcc ctccctatgc tgatttgatc
     1141 caccatatca atattggagg aaagacggca aaggaattac tagaacaaga gaaaaacatg
     1201 ttggaaaagt ttttggcaga agtaaaatgt ttgataataa aaagtaataa gagagcatgg
     1261 tatcaaatgg tagtcgaaac tgctcagcca aaagtcaaca agtaattatg agtatctata
     1321 tgtgtcaaaa aaagaacaaa aaaagaacaa ataaaatctg aaacaatagg tatgaataaa
     1381 tgagattgcg atttttaagt tcccataaag gcttaattta cataacttta ggtaatctag
     1441 taggtgctgc agccactggc gcattttggt tactccttgc cttaattcaa aacgcagatg
     1501 aatatggaaa aactaactat gaaatatcta tagcttcgtt ggcagcaagt gctgctcttc
     1561 ttggccttaa taccacagtt accacttatg ttgcaaaggg ttcaagcaaa ataaacgtac
     1621 aagcaaacca gctaattcta atttctagcg gaattgctgc cataatagtt gctttcttca
     1681 actggattct cggcttcttt gtcataggta tggcattctg gatgatgagc acttatgaac
     1741 ttcttggaag aaaaatgtac aaacaatatg cgtttgtcaa tattggagca agagcatcgc
     1801 aactttttgt atctattttg ctgtattact tcctaggaat aacgggaata gcaattggtt
     1861 ttattatttc ttttctgata tttagccaaa gatatttcat ttctacgaaa gagttcagta
     1921 gagattttag tgaagtcaaa aataaaatca agttttcatt aaatatatat tctttcaata
     1981 tgtcaaatgc attcttgttg tattttgata aacttattat tgcgccttta tttggttacg
     2041 ctgtactagg ctattaccag cttggttttc aattcctatt atttttagga atgataccca
     2101 ttagctttta tcaatatctt attcctgaag aatcaagcgg tctaaaaaag acaagagtac
     2161 gatttctcgg tttattggtt tcagtaggcc ttactgctat actatttttg tctagtccat
     2221 ggatattgca gtatttattt cctcgttata tggcttctct cgattccatg agaattatga
     2281 gcataggaat cattcctatg atgatagttt ggactcttaa ttcaaaattt cttaacatag
     2341 gagacaccaa atacgttcta tttggatctg caatttattt gacaatccag atcggcttaa
     2401 ttttttattt aggcagcaca atgaatgtaa tcggtcttgc attggcagtc gtgctcgcac
     2461 ttatcgcaca ggcatcattt ctctttatat cagacaaaca tctacagcag aaaaataata
     2521 agcatactca atagtagatc catattgtat gcagacagga agaaaataaa aatttgtctt
     2581 ctgcaagaat ttcgtatgca gtaaaattct tcaaagtaaa ggtgaaagct aagaacaggg
     2641 gtttttacag tagtggaatt ttattaataa taatgggctt aatactactt caattataaa
     2701 ttccctctat tgattggcaa ttctgtaatt tatctaacag cacatgttta tttccattat
     2761 acgaccaata ataaacgaat atacattatt atagataaaa tttaaaataa aaatttattt
     2821 tatgatttca tttccctcaa tcttgtagat gttatctgtg atatacatta atgtgtgtat
     2881 gtatgtgtgc atgtatgcat atccaaaggt ttacttttga aacctaatac gaatatttta
     2941 tcctgattca atgatcaagt aatgcaaact tcaaaatagg tacattgcac cactagccaa
     3001 acatacataa aaaatatata tataaaaaat gttaaggctc tagcaaacgc cttaagctaa
     3061 cttgtagcat ttctcgatgt aatttcagga taaacacttg aatatgcatt tttgagaata
     3121 tcaaagtaat ttgttgtttg tggaactcct gtcgcatcag cacccctaat aaggttgtaa
     3181 gttgctatcg ggtgaacatc aatattccat tgccagtatg ccattcccca tgcattggtg
     3241 tccttgaatg tcttaacaat aaggttagcc tcagtctgat ttatattact tagctcaggg
     3301 cttatctgag ttacaacttc gccctcttca ttaatgcttc tctcacgcac cacgttattc
     3361 cattcaccaa aatacaaggg aacttcggca agttgtgctg cttgaatgaa agtattaagt
     3421 ctatctccct gataagtgtc tggagaaggt aatccataca agctaacttt gaataccaca
     3481 tttgtttta
//
LOCUS       DATAAS010000221         1616 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_786333, whole genome shotgun sequence.
ACCESSION   DATAAS010000221 DATAAS010000000
VERSION     DATAAS010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1616)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1616)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1616
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_786333"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            409..567
                     /locus_tag="VHF08_03510"
     CDS             409..567
                     /locus_tag="VHF08_03510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067747.1"
                     /translation="MENQGFSDHCKNGNHIECEECICNCHIPGTMDNLAKNIARLERQ
                     SPGLGESL"
     gene            complement(581..>1616)
                     /locus_tag="VHF08_03515"
     CDS             complement(581..>1616)
                     /locus_tag="VHF08_03515"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RNA-guided pseudouridylation complex
                     pseudouridine synthase subunit Cbf5"
                     /protein_id="HEX2067748.1"
                     /translation="VKIDEDITDEKYGHFPDKRPIESLLNYGLILIDKPAGPTSHEVV
                     AWIKRILDIEKTGHSGTLDPGATGLLPIGLGEGTKALSVLLLGPKEYYALARMHAHIS
                     EQRINSLITEFIGDIYQRPPQRSAVKRATRVRTIFEFDKIEQNDRLVLMRILCQAGTY
                     IRKIIYDIGEVLGPGATMVELRRTQVSNFSEKEGSFTKLHDLADAYQLYNEKKEDTKI
                     RKLIKPIEHCLEGIRAVTIRDTAVDALCHGAQLAVPGVLAVPSGLKPDELVGVYTLKG
                     EIVGLAQAALTTETIENSTTGIAFIMKRIIMKPGTYPRVWHKSSQNFLKIKTANKRSA
                     LDQLEEEDVQ"
BASE COUNT          459 a          331 c          255 g          571 t
ORIGIN      
        1 tcatgccgca cacgttacat atccataccg tcttcaaatc atcttgatgc atatcaatga
       61 tacagtcaaa ttcatgcaat ttaagtgata ggtaaggaag tcatactagt tttgtttaca
      121 attttattag gaaattatat gcaaggtatt gctaaagtag aatcttagag agcaaactta
      181 cttttttatt ttagcgatat tattttttgc taagaaatat atataactta aatctatgca
      241 ttaacacttt attccaaccc taaaccgaaa ttttacattt atttatatga atatagatta
      301 gtaaaatccc ttcttgatat caaaccacaa cattctgttt acttatgtca ctcaagacat
      361 atagacaaac gtaaaaataa ggtttaaaac ataaagttct catcttcaat ggaaaatcaa
      421 ggattctccg accattgtaa aaatggaaat catatagaat gtgaagaatg tatatgcaac
      481 tgtcatattc caggtacaat ggataacctc gcaaagaata tcgccagatt agaaaggcaa
      541 tccccgggtc ttggcgaatc tctttaattt tcttttagtc ttactgtaca tcttcttctt
      601 ctaattgatc tagagcactt ctcttatttg cagtctttat ctttaggaaa ttttggctac
      661 ttttgtgcca tactcttgga tacgtaccag gtttcataat tattctcttc attataaaag
      721 caatacccgt ggtactgttc tcgatcgtct ctgtcgttaa tgctgcttgc gcgagcccaa
      781 ctatttctcc ttttagcgtg tatactccga caagttcatc tggtttcagc cctgaaggta
      841 ctgccaatac tccaggaaca gcgagttgtg cgccgtggca aagtgcatca acagctgtat
      901 cccttattgt aacggcgcgt attccctcca aacagtgttc gataggcttt atcaatttac
      961 gtatctttgt atcttccttc ttctcgttat atagctgata tgcatcagcg aggtcatgta
     1021 gttttgtgaa acttccttcc ttttctgaaa agttacttac ttgggtccgt cgaagctcta
     1081 ccattgtcgc cccgggaccc aatacctcac ctatatcata aattattttt ctaatatatg
     1141 tgcctgcttg acacaatatt cgcatcaaga caagacgatc attttgttct attttatcaa
     1201 attcaaatat tgttcgtact cgagttgccc tttttactgc tgagcgctgc ggtggccttt
     1261 gataaatatc tcctatgaat tctgtaatca atgaatttat tctttgttcg gatatatgag
     1321 catgcatacg tgctaatgca taatattcct ttggtcctag aagtaagaca gaaagagctt
     1381 tagttccttc tccaagacct attggcaaaa gccctgtggc gcccggatct agcgttccac
     1441 tgtgtcctgt cttttcaata tctaatattc tttttatcca tgctactact tcatgacttg
     1501 taggaccggc aggtttatca attaaaatta atccataatt aagtaatgat tctatcggtc
     1561 ttttgtctgg aaaatggcca tatttctcat cagtaatatc ctcatctatc tttact
//
LOCUS       DATAAS010000222        12114 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4021311, whole genome shotgun sequence.
ACCESSION   DATAAS010000222 DATAAS010000000
VERSION     DATAAS010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 12114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12114
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4021311"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            506..1129
                     /locus_tag="VHF08_03520"
     CDS             506..1129
                     /locus_tag="VHF08_03520"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004844 - uracil DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEX2067749.1"
                     /translation="MPMNKVSNDSLEKIASEVIGCPLCKLSRSRRNAVPGDGQLSSKI
                     LFIGEAPGKNEDEQGKPFVGAAGMILNQALEKAGIKRAEVFITNVVKCRPPNNRLPEN
                     DERSICRQYLDRQISLIAPKIICILGSTAYSSILGGKSIIKNRGKIIEKNGQKYFLTI
                     HPAAAIYNKNLRSVLNNDLFLLSKEIKKMEYDKRTSLLDYIADETKL"
     gene            1540..1929
                     /locus_tag="VHF08_03525"
     CDS             1540..1929
                     /locus_tag="VHF08_03525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067750.1"
                     /translation="MSYEEQQQNIERMASAIEDLLYMGAIKFGDADQESEKAILSNQF
                     SIIVSNVMSNMNLKEDDDNDVMKLMYYSLLIYFNEHLKLPKSLTMAFGNDLEKRQEEM
                     QSGELISNYITVLHSIFSKQRKDLKKM"
     gene            complement(2614..4740)
                     /gene="nrdD"
                     /locus_tag="VHF08_03530"
     CDS             complement(2614..4740)
                     /gene="nrdD"
                     /locus_tag="VHF08_03530"
                     /EC_number="1.1.98.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008998 - ribonucleoside-triphosphate
                     reductase activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HEX2067751.1"
                     /translation="MSHDYSYQTETRRDGVLESASKRVGMIFSVMASPNRIDILRILN
                     SKGPLTYSELKSLAGFKSKKESGKFAYHLRKLLRQLLVALNKAERRYTITNLGKLVLS
                     LARQIEERSIIESGKMYVRTTRHSIEEFNSHKIIQSLVREANMPLEQANKITEEVENK
                     IYKFQTSYLTSSLIRETVNSVLIEHGHEEYRNKLARLGLPASDIVEILNNIDTVKNGA
                     DSIMSKASQSVFSEHLMLNILPKDIADMHLNGEISISNSGIWSLLPDTVFLNITDFAE
                     VGLDLKGKFLNVSRIPAIKNSDDLGIALPILISLLSREVSTEIVLDGIIPLLLEDQIR
                     EPNEIASRFENILMASSVAPSYSPAGLPITTITVQLDKFDKKSIDAVLSGYRSYIAST
                     PVPRIGISLINNDKLRDYSDIIASIVRAGGIVSILQNGSRSNNGVRKNIGDKGSGTVM
                     TLQSLSINLPRLAYQSNKDETYFRARLALIIKPALSAMSMRKKIIADLIRKQMIPVIA
                     NSAQFIQLGTTNVIINLTGIEESVYKILGHDASNDGAEILQKVLKTAVDVATEHGKQL
                     GEDSIGIAMIHDDSATRFATLDSDKYGRISLLTSNQQKTVTYSQGLTLNARELLSSDN
                     NKHNSVIKECISIDNILNGGLSLTLDVSELYSDEEVKNAIESAADLPFFRLMSKTLVC
                     NTCGKRSSTQSSERCEYCKSPYLLMV"
     gene            complement(4853..5446)
                     /locus_tag="VHF08_03535"
     CDS             complement(4853..5446)
                     /locus_tag="VHF08_03535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067752.1"
                     /translation="MSDILTASKVVHNQLTRLNMLDKKFTLMDKDLRYKIAANIKAGN
                     NARARALAMELSNIHRIQQTTQNMSLALEVIVIRFSTINEFAMVLDTINPTIEMIKDI
                     QNDISRTVPTTSHLLTEMTSMTSDILLNTNIKSEVGKISTSMDSDALSILNEVEGILE
                     DEAKSRLPEVPTTIQGVRISRDVEEVTVKDNRMMIES"
     gene            complement(5826..6194)
                     /locus_tag="VHF08_03540"
     CDS             complement(5826..6194)
                     /locus_tag="VHF08_03540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide-binding protein"
                     /protein_id="HEX2067753.1"
                     /translation="MSAREKFIASAKKNKILANKCSYCGHTMLETVNYCEKCFGSKFE
                     SIEVEGIGKVVTYTIQAVAPEGFEDVDSYAWVVFKVNNAPFRASGFLPRVATPKDLPI
                     GTTVKVTGFDPKHGLLLEKL"
     gene            complement(6238..7419)
                     /locus_tag="VHF08_03545"
     CDS             complement(6238..7419)
                     /locus_tag="VHF08_03545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase domain-containing protein"
                     /protein_id="HEX2067754.1"
                     /translation="MQKSISKQMTNKVCVLGAGSTKYGKLNESIIEIALNASKDAIES
                     AGITPKDIQAGYISNVFGVADKQVHMAPVIMSNLGIPHVPGLTIESACGSGSVMLREA
                     YANIAAGFYDCVLALGVEKITHTGTTQSTTLFSYCSDFFYEGGNGATFPGLFASIARA
                     YMTTHKANEEDLAYVAVKNHENGILNPKAHVRKKITVDDVMKSPVVASPLKLYDCCPF
                     SDGASAVILCNEEFAKKSRKPYVEVIGSGRGASPAAVQAREDITTIPSTISAAKQAYK
                     MAGITPKDIDFAEVHDCFTIAEIIDIEDLGFFPKGTAAHAVTEGATKINGEIPINPSG
                     GLKSKGHPIGATGVGQVVEVFEQFTGKAGERTVKNAETALTHNFGATGASAAVHIFRK
                     V"
     gene            7490..9607
                     /gene="topA"
                     /locus_tag="VHF08_03550"
     CDS             7490..9607
                     /gene="topA"
                     /locus_tag="VHF08_03550"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase I"
                     /protein_id="HEX2067755.1"
                     /translation="MPDKKDEPFVLVICEKPNAARRIAQALGTNSFKRSISSEGIPFF
                     YAISNNNSHYMIFPSIGHLYGLVDVTKNREIYPVFDLEWMPFLSNSHRLNRVEQIIKS
                     ISELSKRATRFIHACDYDQEGEVIGYNILQYACKFKYDKSLRAKFSTLTDQEIRESFD
                     NLLKPNRGLAEAGRSRHILDFIYGVNLSRALSQSFKIGNNGKQYHNLSIGRVQGPTLA
                     FAVDKEVDIRKHIPDPYWGIIADFEKNGHIIQAFYEKDKVHTLLEANSIINACNGKDG
                     LVSQVKVQKILLHPPTPFNLGDLQKEAYRLFKFSPTYTLSIAERLYLDAMISYPRTSS
                     QKLPLSTDYKKIIAHLSKVNSNYGSLTAALLSKDRLLPNEGNKTDPAHPAIYPTGEKP
                     KRQLDQMHCKIYDLIVRRFLATFGDPAINQHTTASIDIDGRYVFKSEGKSNIHEGWIH
                     FYKPYFIFHEVELPKLNQGDILRNVVVISKEKFTQPPFRFNQASLLEKMEKEQIGTKA
                     TRAQIISTLFSRNYIVTSQKLFGIEVTDLGFAVIETMKKYVPNIVSTDFTRAMEKNLE
                     NIEICKSKSFLVIESAVDNLIEWLTRFKEKEVDRGDKITDAADINLTKEITAGTCPLC
                     QKGELRIIISRTSKKRFVGCSNYYAGCKATAPLPQKGTIKTTTKRCNFCNWPIINIVF
                     SRRARYPWKICINMLCPSKNIRS"
     gene            complement(9604..10440)
                     /locus_tag="VHF08_03555"
     CDS             complement(9604..10440)
                     /locus_tag="VHF08_03555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEX2067756.1"
                     /translation="MPKFPLVAIVQMRSSEDKMENLQLSVDFIREAAKKKSNLICFPE
                     FQMAYSPVSQSANQLSEIAESVNDGNFITTLRKAAKVNKISIISTIYEKSNSGFNNRV
                     YDTVVLIDSKGEISSVYRKLHLYDALGFKESDKMMAGNMIEKPAKTSVGNIGLMICYD
                     IRFPEMSRILTVKGANVLVSPSAWVHGVMKEEHWQTLLKARAIENGLYIIAPDQVGNI
                     FSGRSMAVDPFGVVLLDMGNREGMEVVEIDKSRVQKVRELLPLLKNRRTDVYGNNMSV
                     FS"
     gene            complement(10493..10669)
                     /locus_tag="VHF08_03560"
     CDS             complement(10493..10669)
                     /locus_tag="VHF08_03560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase family protein"
                     /protein_id="HEX2067757.1"
                     /translation="MPLISVSLYPGRTKEQKEEFAKAITEASVEILKAKAEHIIVVYD
                     EKPKENWYISGKRL"
     gene            complement(10805..11623)
                     /locus_tag="VHF08_03565"
     CDS             complement(10805..11623)
                     /locus_tag="VHF08_03565"
                     /inference="COORDINATES: protein motif:HMM:NF014049.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF92 domain-containing protein"
                     /protein_id="HEX2067758.1"
                     /translation="MFFIDEVIVWLTGIIAMTIFAYKINVIDKYGALAAVPIGFIILY
                     FGATSWFIVLLLFFLISSFFTKYKYKQKQMLGVAEENNGARGWRNVLANGGPLAAIAI
                     LYYISDNNPIFMLCFVGSISFALSDTVATEIGLLSKVKPRSLLTGKQIDKGQSGGVTI
                     QGEIAALIGSLLIGTVCGLLISENISLRILIILSAAIVGGMIATNADSIFGATIQAKY
                     RCINCRKYLEKKSIHCSFPTIHEKGISIINNNTVNFISAIIGAVISANFIVVYE"
BASE COUNT         4034 a         2121 c         1946 g         4013 t
ORIGIN      
        1 atggaatagc gatattgcaa tatcagaaac tcgtgaaagc atacagagaa tatattgatt
       61 cattagaaag gaatatgtag ttgctgatat tgtagactag ttaaggatgt aataacgaac
      121 aatacatata tcgtactata gtatatctct aataaggatg gttatctaaa caattatcgc
      181 ttcaaacaat atacatattc ttaactatat tacaaatagg cgagtgtact cctgcagtca
      241 atatgattaa ataatacata tatctcatta ttattttaca aatcgagact tgagaatatt
      301 tattaagtat ttttaaaatt attctgttca atggatatac aactgcaaat atttgaaggc
      361 tcatttaagc ataattcaaa aatgtggata gataattatt agtctaatta atatgtttga
      421 attttataag gtagacttta tttggccata ttattattct taaacagaaa ctttacacct
      481 taagaatcac attatacata tatagatgcc tatgaataag gtttcaaacg attcattaga
      541 gaaaattgct tcagaagtga ttggatgccc gctatgcaaa ctttctagga gcagaagaaa
      601 tgctgttcca ggtgatggtc aactttcatc aaaaatactg tttattggtg aagcacctgg
      661 caaaaatgaa gatgaacaag ggaaaccctt tgtcggtgct gcaggaatga ttttgaatca
      721 agcgttggaa aaagcaggga taaaaagagc tgaagtcttc attacaaatg tagtaaaatg
      781 ccgaccacca aacaatagat tgcctgaaaa tgacgaacgt tctatctgca ggcaatatct
      841 tgatagacaa atttccctta ttgccccgaa aattatttgt attttaggaa gtactgcata
      901 ttcatcaatt cttggtggaa aatcaattat taaaaacaga ggtaaaataa tagagaaaaa
      961 tggacaaaag tactttctaa ctatccatcc tgcagctgca atttataaca aaaatttaag
     1021 atcagtatta aacaacgatc tttttttact atcaaaggaa attaaaaaaa tggaatatga
     1081 taaaagaact tcattgctag attatatagc agacgaaaca aaattataat tactaattag
     1141 tcacttgttg aataaataat atacagttat atatatttca gccattatcg ataattattg
     1201 attactatta atattgaaga taccatctaa ctaatgattc attgtagtta cgctaattga
     1261 gcacaagaca atagatatat acttcatcta ttctaagtga atatagatca aactctattt
     1321 taacagaagg gtaagttatg caacaaagta gttgttatta tattttgaca gaaagataga
     1381 aaccataaca acaggctaac tcttgaatat tctaattgct taacaagata ttaaatgata
     1441 acactctgaa atagcaatta gatacaatca ataaaaatag agatcaaccc ttagataatt
     1501 acagataacc taaaataatc ttgaagtctg attttgaata tgtcctatga ggaacaacaa
     1561 caaaacatcg aaaggatggc atcagctatt gaagatctcc tttatatggg agctataaaa
     1621 tttggcgatg cagatcaaga aagtgaaaag gcaatcctat caaatcaatt ctctattatc
     1681 gtatcaaatg taatgagcaa tatgaatttg aaagaagatg acgataatga tgtcatgaag
     1741 ttgatgtatt attctctttt aatatacttt aatgaacatt tgaaattgcc aaaatcattg
     1801 acaatggctt ttggtaatga tcttgaaaag cggcaagaag agatgcagtc tggagaattg
     1861 atctcaaact acataactgt attacacagt atattttcaa aacaaagaaa agatttgaaa
     1921 aagatgtaac aatcacttat cataaaatga taaattattt agaatatata atttaagttt
     1981 tattccccag ttaattctaa atgatatagc aagaaatgta aaatagaatg aaaatagaat
     2041 tgaatttatt atagaacaaa ttcatacatc aggcttgata aaaaaactta agtctgaaaa
     2101 gaacaactgt tcatgtaaga ctttgaaata gaagaagtag tagtagaaga agattatgat
     2161 aagacaagaa caaagatgaa gataatcatt agcagagcct aagcctaaat tggtgctaaa
     2221 ttttaagaga attaatctga ttattgagag aatcctcaat atttttattt tactttctat
     2281 caacaagtat attccttatt taattcaata tttattcaat acatattacc atatatacca
     2341 ttatataaca tactaatttt catagtgata ctctagctat ttctttaatg ttttgtgcta
     2401 atcaacagat tatctatgat gatgttctaa ttagttatat gcaaatacaa taattagcaa
     2461 gagatcgatt tttatcttta gattaaatct tagaaataat actctgaatg catttagaat
     2521 atgataaatt gcgattgcta tatctatacg aaaagtatac tatcaaataa atattaatag
     2581 atcctatccc aagacttttt ttcatccttt tttctaaacc atcagcagat aaggagattt
     2641 gcaatattcg cacctttcac tagactgtgt gcttgatctt ttaccacaag tgttgcacac
     2701 caatgtttta gacatgagac gaaagaatgg taggtctgct gcagattcta ttgcattctt
     2761 tacctcttca tcagagtaaa gctcgcttac atccaaagtt aacgaaagcc caccattgag
     2821 tatattatct attgagatac attccttaat tacagaatta tgtttattat tgtcagacga
     2881 taacaattcc ctagcattta atgttaaccc ttgagaataa gtaactgttt tttgttgatt
     2941 tgatgttaga agagagatcc taccatattt atcagagtct agagttgcaa atcttgtagc
     3001 actatcatca tgtatcatag cgattcctat agagtcttct ccaagctgtt taccatgttc
     3061 tgtagccaca tcaacagcag tcttcaaaac tttttgcaaa atctctgctc catcattaga
     3121 agcatcatga cctaaaattt tatatactga ttcttctatg cccgtaagat taattataac
     3181 attagtagtt ccaagctgta tgaattgtgc gctgttagca atcacaggaa tcatttgttt
     3241 ccttataaga tcagcaataa tcttcttcct catcgacatc gcagataatg caggctttat
     3301 gatgagagca agccttgctc tgaaataagt ttcatcctta tttgattgat atgccagtct
     3361 tggaagatta atagaaagtg attgtaaagt cataaccgta ccagaaccct tgtctccgat
     3421 atttttacga acaccattat tgcttctaga tccattttgt aaaatggaaa cgatgccacc
     3481 agcgcgtact attgacgcaa taatgtcaga ataatccctt agtttgtcat tattgattag
     3541 ggatattcct attctaggaa caggagtaga agcaatgtaa cttctataac cagacaatac
     3601 tgcgtcaatt gattttttat caaatttatc taattgaacg gttattgtag taataggaag
     3661 tccagctgga gaataagatg gggctacaga tgatgccatc aaaatattct caaatcgtga
     3721 tgcaatctca tttggttctc ttatctgatc ttctaataat aagggaataa ttccatcaag
     3781 tacaatttct gttgaaacct ctcgacttag aagcgaaatc aatataggca gagcaattcc
     3841 aaggtcatct gaattcttta ttgcaggtat tctagagaca tttaagaatt ttccttttaa
     3901 gtctagaccg acttcggcaa aatcagtaat atttagaaat acagtatcag ggagcaaact
     3961 ccaaattcca ctattagaga tacttatttc accattcaag tgcatatctg ctatatcttt
     4021 tggaagtata ttgagcatga gatgttctga gaatacagac tgagaagcct ttgacattat
     4081 actatcagct ccgttcttca ctgtgtctat attatttaat atttctacaa tatcagaagc
     4141 aggtaatcct aatctggcca acttgtttct atattcttca tgtccatgct caatcaacac
     4201 tgaattcaca gtttctctaa ttaatgatga agtaagatac gaagtctgga atttgtatat
     4261 cttgttttca acttcttctg taattttgtt tgcctgctca aggggcatat tagcctctct
     4321 tactaatgac tggattatct tatgggaatt aaactcttca attgaatgtc tggtggttct
     4381 aacgtacatt ttaccacttt caattattga tctttcctct atctgcctgg caaggctcaa
     4441 taccaattta cccaagttag taatagtgta acgtcgttct gccttgttaa gagcaacaag
     4501 taattgtctt agcagttttc gtaaatgata tgcaaatttt ccagactcct ttttagattt
     4561 gaatccagca agagacttta attccgagta agtcagaggt cccttagaat ttaaaatacg
     4621 cagaatatcg attctattag ggctagccat aacagaaaaa atcattccaa ctcgttttga
     4681 agcggattct aaaactccat cccgcctagt ttctgtttga tatgaatagt cgtgactcaa
     4741 ctgttccatt gcacccgtta ttcgataaat gattaaaact actttgtaaa tttttattaa
     4801 ctaattatat aataggccct actcctatca attgattagc aggtcaacag atttaacttt
     4861 caatcatcat acgattatct tttactgtga cttcctcaac atctctactt atcctaaccc
     4921 cctgaatagt agttggaact tcaggtaatc gcgactttgc ttcatcttca agtattcctt
     4981 cgacttcgtt caatattgaa agcgcgtcag aatccataga agttgaaatc ttgcctacct
     5041 ctgactttat attggtgttt agcagaatgt ctgatgtcat tgacgtcatc tctgttaaca
     5101 agtggcttgt tgttggaacc gtcctcgaaa tatcattttg aatatccttt atcatttcaa
     5161 tagttggatt aatggtatca agcaccatgg caaattcatt gatagtacta aagcgtatta
     5221 ctattacttc tagtgcaagg ctcatgtttt gtgtggtctg ctgaattcta tgtatatttg
     5281 atagctccat tgcaagagct cttgccctag cattgttacc agcctttatg ttagcagcta
     5341 ttttataacg caagtcttta tccattagag tgaacttttt atcaagcata ttcaatcgag
     5401 tgagttggtt atgaactact ttgctagcgg ttaaaatatc actcatgaat tgttgatgct
     5461 tgtccatcta ctttttctat caaaaggtga ttatttaaaa tgttaagact aaatgttaat
     5521 gtatgtatac aaatagctgt ataatgctaa gctacaaatt caaatttgac atgagctgtg
     5581 ggtgaacgaa ctaaacgtaa tttcatctat agatcattaa tagttttagg ctattgcaat
     5641 ttttgaaggt gcatttgatt acatttggaa aagtaatggg acgattctca gcatgtacaa
     5701 agtcaataag atataacagc ttgatctact cagcttttcg tatatattgt ctaatcaccc
     5761 atatgcctgg ttgtatgatg tgatgtttgt attgttctct tatctccaca ccaaagtaac
     5821 tacatctaaa gcttttctaa caaaagacca tgttttggat caaagccggt tactttgact
     5881 gttgttccta taggtagatc tttaggggtt gcaaccctag gaagaaatcc tgatgctcta
     5941 aatggcgcat tatttacctt gaaaacgacc cacgcatatg agtcgacatc ttcaaatcct
     6001 tctggcgcta cagcttggat cgtataagtg actaccttac caattccttc cacttcgata
     6061 gattcaaatt tgctaccaaa gcatttttca caatagttta ctgtttctag cattgtatgt
     6121 ccgcaatagg aacatttgtt ggcaagaatt ttattttttt tcgccgatgc gataaacttc
     6181 tctcgtgcac tcatagcatg ctgttacctg ttagcaccag acattattat tattttacta
     6241 tacctttcta aatatatgaa cagcagcact tgcaccagta gccccaaaat tatgtgtaag
     6301 agcggtttct gcattcttaa cagttctttc tcctgcttta ccagtgaact gctcaaaaac
     6361 ttctacgact tgacctacgc ctgttgcacc gattggatgt ccctttgatt tcaaaccacc
     6421 agatggattg atcggaattt cgccgtttat tttagttgct ccttctgtta cagcatgagc
     6481 agcagttcct tttggaaaga aaccaagatc ttcaatatca atgatttctg ctattgtaaa
     6541 gcagtcatgc acttctgcaa aatcaatatc ttttggagta ataccagcca ttttgtatgc
     6601 ttgctttgca gcggatattg tgcttggaat agtagtaata tcttcacgag cttgaactgc
     6661 cgcaggtgat gcccctctgc ctgaacctat aacttcaaca tatggttttc ggcttttctt
     6721 ggcaaactct tcattacaaa gtataacagc tgatgcccca tcagaaaatg ggcagcagtc
     6781 ataaagtttc aaaggtgaag ccacgacagg agatttcatt acatcatcaa ctgtgatttt
     6841 ttttcgaaca tgagcctttg gattgaggat tccattttca tggttcttta cagctacgta
     6901 agcaaggtct tcttcattgg ctttgtgtgt agtcatatat gcccttgcta ttgatgcaaa
     6961 taatccagga aatgttgccc catttcctcc ctcataaaag aaatcagaac agtaagaaaa
     7021 taaagtagta ctctgagttg ttcctgtatg tgttattttc tcgacaccta atgccaaaac
     7081 acaatcataa aatcctgcag ctatgttagc atatgcctcc cttaacatga cagaacctga
     7141 accacatgca gactcgatgg tgagtcctgg aacgtgtgga attcctaagt tactcataat
     7201 aacgggtgcc atatgtacct gcttgtcagc cactccaaaa acgtttgaga tatagcctgc
     7261 ctgaatgtcc tttggtgtaa tacctgcaga ctctatagca tcttttgatg catttaatgc
     7321 tatttcaata atactttcgt ttaatttacc atatttggta ctgcctgcac caagaacgca
     7381 gaccttattt gtcatctgtt tagaaatact tttttgcata tatataaatt gttaaacatc
     7441 aatctataca ataataacgt ccatatttat tctctattta atgtaattca tgcctgataa
     7501 aaaggatgag ccatttgtac ttgttatctg tgaaaaacct aatgccgccc gaaggatagc
     7561 acaggcactt gggaccaata gtttcaaaag atctatctca tcagagggca ttccattttt
     7621 ttatgctatt tcaaataata atagtcatta tatgatattc ccttctatag gtcatctata
     7681 tggcttggtt gatgttacaa aaaatcgaga gatatatcct gtattcgatt tagaatggat
     7741 gccatttctc tcaaactcac acagactaaa tagagtcgag caaattataa aatcaatatc
     7801 agagctctca aaaagagcta ctcgatttat ccatgcctgt gattatgatc aagaaggtga
     7861 ggttattggt tacaatatcc ttcaatatgc ttgtaaattt aagtatgaca aatctttacg
     7921 tgctaaattc tcaacactta cggatcaaga aataagagaa tcattcgata atttgctaaa
     7981 acctaacaga ggcttggctg aagctggtag atctagacat atacttgact tcatatatgg
     8041 agtgaatctt tcaagggctc tttcacaatc ttttaaaata ggcaataatg gtaagcaata
     8101 ccataacttg tccattggca gagtacaggg acctactcta gcttttgcag tagacaaaga
     8161 ggttgatatt agaaaacata ttccagatcc ttattggggc ataatagcag attttgaaaa
     8221 aaatggtcac ataattcaag cattttacga aaaagacaag gtacatacat tattagaagc
     8281 taattcaata attaatgctt gtaatggcaa agatggatta gttagtcaag ttaaagttca
     8341 aaaaatttta ctccatcctc ctactccgtt caatctaggc gacttacaaa aggaagcata
     8401 tagactattc aaattttctc ctacttacac gctttcaatt gctgaaaggc tttatcttga
     8461 tgcaatgatt tcttatccaa gaacatcaag tcaaaagttg ccgttatcta cagactataa
     8521 gaaaattatt gcgcatctat ctaaagttaa tagcaattac ggaagcttaa ccgcagcatt
     8581 actttccaag gatcgtcttt tacctaatga aggaaataaa acagatccgg cacatccagc
     8641 catttatcca actggagaaa aaccgaagcg acaactagat caaatgcatt gtaaaatcta
     8701 tgatcttatt gtcaggaggt tcttggcgac ttttggtgat ccagcgataa atcagcatac
     8761 aacagcatca attgatatcg atggccgtta tgttttcaaa tctgaaggaa aatcaaatat
     8821 acatgaagga tggatacatt tttacaaacc atattttata tttcacgaag tagaactccc
     8881 aaaattgaat caaggcgata ttttgagaaa tgtcgtagtt atttctaaag agaaattcac
     8941 gcaaccgcca tttcgattta accaggctag tttattggaa aagatggaaa aagaacagat
     9001 tggaacaaag gctacaagag cacaaatcat aagtactttg ttcagccgaa attatattgt
     9061 cacaagtcaa aaattatttg gaattgaagt cacagacctc ggatttgctg taatagaaac
     9121 aatgaaaaaa tatgtaccaa atattgtttc tacagatttt accagagcta tggaaaaaaa
     9181 tttagaaaat attgaaatat gtaagagcaa gagttttttg gttatagaat ctgccgttga
     9241 taacttaatc gagtggctca ctagatttaa agaaaaagag gttgatcgag gagataagat
     9301 aacagatgca gcagatatta atttgaccaa agagataact gctggaactt gtcctttgtg
     9361 tcaaaaagga gaattaagaa tcataatatc tcgtacatca aagaagagat tcgttgggtg
     9421 ttctaattac tatgctggat gtaaagcaac tgctccgctc ccccagaaag gtacaataaa
     9481 aactacaacc aaaagatgta acttttgtaa ctggccaatc atcaatattg tattttcgcg
     9541 tcgagcaaga tatccgtgga aaatatgtat aaatatgctc tgtccgtcaa aaaatatacg
     9601 tagctaacta aatacgctca tattattgcc gtagacatca gttcggcgat ttttcaaaag
     9661 tggaagcagt tctcttacct tctggactct ggatttatca atctcaacta cttccattcc
     9721 ttctctattt cccatatcta acagtacgac accaaacgga tctacagcca tgcttctgcc
     9781 agagaaaatg ttgccaactt gatctggcgc aattatatat aaaccatttt caattgctct
     9841 agctttaagt aatgtctgcc agtgttcttc tttcatgacg ccatgaaccc atgcggaagg
     9901 cgagaccaga acattggcac cctttaccgt caaaattcta gacatttcag gaaaacgaat
     9961 atcataacaa atcatcagtc ctatgtttcc taccgatgtc ttggcaggct tttctatcat
    10021 attgccagcc atcatcttat ctgattcttt aaaacctagc gcatcataaa gatgtaattt
    10081 gcggtaaact gaagatattt cacccttgct gtctataaga acaactgtat cgtagacacg
    10141 attgttaaac ccactattac tcttttcata aattgttgat atgatactaa tcttgtttac
    10201 tttcgcagct ttacgcagtg tagtaatgaa attgccatca ttcacagatt cagctatttc
    10261 tgataattga tttgctgact ggctcactgg tgaataagcc atctggaatt ctggaaagca
    10321 tatcagattt gatttcttct ttgcagcttc tctgataaag tcgactgata attgcagatt
    10381 ttccatcttg tcttctgatg atctcatttg tactatggcg acgagaggaa actttggcat
    10441 ttttcagtat aataatggtc atctaagcat aaaataaaat agtttgctac tattaaaggc
    10501 gttttcctga aatataccaa ttctccttag gtttttcatc atatacaaca attatatgtt
    10561 cagctttcgc ctttaaaatt tctacagatg cttcagttat tgcctttgca aattcttctt
    10621 tctgttcttt agttctccca ggatacagtg agacggaaat tagaggcata tatatagaaa
    10681 ataaatatcc atgggacaat taaatcctct gcaatgatgg agtcaaaaga aaatatcata
    10741 tatcagcagt caaattatac atttcttcat agagaatcta attattatcc caatcaacgc
    10801 aaatttattc atatacaact atgaagttgg ctgatataac agctcctatt atagcgctaa
    10861 taaaattaac cgtattattg ttaattattg atatcccctt ttcatggatt gtaggaaaac
    10921 tacaatgtat agattttttt tctagatatt ttctacaatt tatgcatcta tatttagctt
    10981 gaatggtcgc tccaaaaata ctgtcagcat ttgttgctat cattccaccg acaatggctg
    11041 ctgaaagtat aataagtata cgcaatgata tattttctga tattaataat ccacatactg
    11101 ttcctattaa aagtgaacct ataagtgcgg cgatctctcc ttgaatagtg actcctcctg
    11161 attgaccttt gtcaatttgc ttgcctgtta atagcgaacg tggttttact ttacttagta
    11221 agcctatttc agttgcaacg gtatcagaaa gtgcaaaact gattgaacca acaaaacata
    11281 acataaaaat gggattatta tctgatatgt aataaaggat agctatagct gctaatggtc
    11341 ctccatttgc taatacattt ctccatcctc gtgcaccgtt attttcctca gctacaccta
    11401 acatctgttt ctgtttgtat ttatacttgg taaagaatga tgaaattaga aaaaataaca
    11461 gcaagacaat aaaccatgaa gtagcaccaa agtataatat aataaaacct attggaacag
    11521 cagctaatgc accatattta tcgattacat ttatcttgta agcaaaaata gtcatggcaa
    11581 taataccagt tagccacaca ataacttcat ctataaaaaa cacatctttt ataactcaaa
    11641 ttttgttatt aatatctatt gttcaataag ttcaataaaa aattacagct tgtgaggatg
    11701 attgtacccc gtcgatgctt tattatattc ttgtgccaat ttgtagaaca aagattagat
    11761 atctttggtg aaatgcaaat agtaaaggat atttctaaac tttcccataa ccactcagaa
    11821 tgaacagaat catgttatgt ttatttacta tggacaaggt gctctattcc aatttatttc
    11881 ttgatctctt tatttctgtg tacaattacc atttaacaga cttagaaagt cgtcaaagta
    11941 attgttggta ataattgaag atattttgta attatgcaat agagttgttt gtgctagtca
    12001 atatgtatta aaagcgcata tttcgaatag atgaatgcaa ggttgctatt ttgcattaat
    12061 tagagtaata tagtacttga ccgagtatga tattagagca ttttaaaatt tgtt
//
LOCUS       DATAAS010000223         1743 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_241767, whole genome shotgun sequence.
ACCESSION   DATAAS010000223 DATAAS010000000
VERSION     DATAAS010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1743)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1743)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1743
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_241767"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..549
                     /locus_tag="VHF08_03570"
     CDS             <1..549
                     /locus_tag="VHF08_03570"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX2067759.1"
                     /translation="FSILLAMLFFKERLRLIGYLAVTMVLVGIVIVTTDVPFSSSIPV
                     INLGNFLVILATVFWAIDNNLSKNIAHKVDIARLAQLKSLIGGSILLLIVFLMGISIN
                     IDATQLLHISVLGSVGFAASLYFFLQSLKRIGTVRTILMFSMSSVFGLIFAILFLKED
                     IRIYQMGAIALMISGIYLMTRE"
     gene            complement(948..1556)
                     /locus_tag="VHF08_03575"
     CDS             complement(948..1556)
                     /locus_tag="VHF08_03575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067760.1"
                     /translation="MSHIANSHYGVTFLTTLTNEEILKVLALIDNANNIIDNFFGVRT
                     SFDIVICRSGWEMEIQFISRRHKSPLQLYYDTKSVSITDYHLREIIIRFDIAKFGHYL
                     HELLHGIINTDYTHQLREGLAWYFTMKLTESYRYVRPSYPSWVDNLYLYPVNKLARIV
                     GDNFLKDFAIGKASIQEDALPSDIQDLFQTEEVFYAKKRYYH"
BASE COUNT          580 a          268 c          272 g          623 t
ORIGIN      
        1 ttttctatcc tattagctat gttattcttc aaagaaagat taagacttat tggttatctt
       61 gcagtcacaa tggttctagt cggaattgtt atagttacaa ctgatgttcc attttcttca
      121 tctattccag taataaatct aggaaatttt cttgtaattt tggcaacagt attctgggcg
      181 atagacaaca acctgagcaa gaatattgct cacaaagtag atatagcaag gcttgcacag
      241 ttaaaatctc tcattggggg ttccatatta cttcttatag tattcctaat gggaatttca
      301 ataaacatag atgcaacgca gctattacac atctctgtac ttggttctgt tggttttgca
      361 gcttcacttt atttttttct acaaagccta aaaagaatag gaactgttag aacaatcctg
      421 atgttttcta tgtcatcggt atttggacta atattcgcaa tattatttct caaagaagat
      481 ataagaatat atcagatggg agccattgca ctcatgatat ctggcattta tttaatgaca
      541 agagaatagc aacagagggt attagtgatt aacctcttaa aagagaccct ttatgaaaga
      601 gattattatt agttatctat tactaagtct gaattttaaa aagatgacat tactgcttag
      661 cctaggtatg aagaaatttg actatagtat atctggcttt ttatgactag ttttctaata
      721 tgtccgtatt tcagcataat tttaatctct actctatatt caatcaattg aaaattaaaa
      781 cgtgtcaagt atcttatctt gcagcattat ttgaaaatag tgtatagata gcatattatc
      841 ttgtcggtct tatcagtatc taacagtaaa atacaaaatg gtagagttgg catatgatca
      901 tcgctctgat aatactaaga gaattaataa taagtcttaa cactagacta gtgataatat
      961 cttttttttg cgtaaaatac ttcctctgtc tgaaataaat cttgtatatc gctagggaga
     1021 gcatcttctt gaatagatgc ttttccaata gcaaaatctt ttaagaagtt atctcctact
     1081 attcgtgcta acttatttac tggatataaa taaagattat caacccatga agggtaggac
     1141 ggtcgtacat atctatatga ttctgtaagt ttcatggtaa aataccatgc caagccctct
     1201 ctaagctgat gggtgtaatc tgtgtttatt attccatgca atagctcatg taaataatga
     1261 ccgaattttg ctatatcaaa tcttatgatg atctctcgta aatgataatc agttattgaa
     1321 acagattttg tatcataata tagttgtaaa ggggacttat gtcttctgga tataaactga
     1381 atttccattt cccaaccact acggcatatt acaatatcaa aagatgttct aacaccaaaa
     1441 aaattatcaa taatattatt tgcattatca atcagtgcca atacctttag gatttcttcg
     1501 ttagtgagtg tcgtaagaaa tgttacacca tagtgtgagt ttgctatatg tgacatatct
     1561 gtggtgctac atctaagaca ttataattga taaacgaaac cataaatatt attattcttt
     1621 tttttgtata aatacctata tggctatcat aacaatcggt tatttaaagt tccagtatca
     1681 ttagtatcat acgaataaat gtaatataga atataagaca atgtggaatc aatcaatttg
     1741 cag
//
LOCUS       DATAAS010000224         2737 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1869276, whole genome shotgun sequence.
ACCESSION   DATAAS010000224 DATAAS010000000
VERSION     DATAAS010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2737)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2737)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2737
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1869276"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(133..1107)
                     /locus_tag="VHF08_03580"
     CDS             complement(133..1107)
                     /locus_tag="VHF08_03580"
                     /inference="COORDINATES: protein motif:HMM:NF021370.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2070 family protein"
                     /protein_id="HEX2067761.1"
                     /translation="MDPHSDSVSNIHRRWSLTRLNPSSYKFSFLISILSSTIIILTCH
                     FYLLKTDWFIFVFHLLLGLMTTTGAAFLDFFLLQRTPNNKITKIYHVSAFANLLWALT
                     ILLGIASDILLSKNEITTNYIVEGMFLAIGLRTGIFTSVFGATLSNAIPVSFISPLLF
                     LFAFLPFTFYFEAITTPIALGFGSSLLLLGIIWTIFADRAGRPRIESTFRVLQAFLAA
                     WTENKAENMEKITESRAHIETVLTYILKLKTMNSNEIFMILPDIHPGPFHPIGGSNLP
                     YLLYMLFSKNAMVMHSVSDHGIFRKKHIQKVREVTSSYRMKWSWVYVR"
     gene            complement(1123..1287)
                     /locus_tag="VHF08_03585"
     CDS             complement(1123..1287)
                     /locus_tag="VHF08_03585"
                     /inference="COORDINATES: protein motif:HMM:NF002318.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit Sec61beta"
                     /protein_id="HEX2067762.1"
                     /translation="MTKKKNAPLPASSAGLLRFFEDETKGIKIKPEIVLGITGAIIGI
                     SILIRIIFPI"
     gene            complement(1641..2084)
                     /locus_tag="VHF08_03590"
     CDS             complement(1641..2084)
                     /locus_tag="VHF08_03590"
                     /inference="COORDINATES: protein motif:HMM:NF018392.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Sjogren's syndrome/scleroderma autoantigen 1
                     family protein"
                     /protein_id="HEX2067763.1"
                     /translation="MSTDDMRSYETSAIKNAAELLTRGASLINEACPKCRGVQVKFKE
                     VITCINCGYEQKRSKDVSSIHSKQRSIFESKGDSKSNPLEFIEDKVIDKIVNLINKLD
                     DEDLGEEKKKADLLELYIRIIEKTRQLKNKFDVKTSDAIDNRKLR"
     gene            2177..2485
                     /locus_tag="VHF08_03595"
     CDS             2177..2485
                     /locus_tag="VHF08_03595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor"
                     /protein_id="HEX2067764.1"
                     /translation="MAVICKKCGLPDDLCACGELEKEDTRVVVRLETRRFSKTTTMIE
                     GIDPKLSDMQRIVKELKSRFACGGTAKDGFIMLQGDHRDDVKGYLVKMGFNESAIEVQ
                     "
BASE COUNT          916 a          435 c          465 g          921 t
ORIGIN      
        1 ttccttgctg catggactga aaacaaagca gaaaatatgg agaagatcac cgagtctaga
       61 gctcacattg aaactgtact aacgtatatt ctaaaattaa aaactatgaa ttccaatgaa
      121 atatttatga ttctacctga catacaccca ggaccatttc atcctatagg aggaagtaac
      181 ctcccttacc ttctgtatat gtttttttct aaaaatgcca tggtccgata cactgtgcat
      241 aaccatggca tttttagaaa ataacatata cagaaggtaa gggaggttac ttccacctat
      301 aggatgaaat ggtcctgggt gtatatcagg tagaatcata aatatttcat tggaattcat
      361 agtttttaat tttagaatat atgttagcac agtttcaatg tgagctctag actcggtgat
      421 cttctccata ttttctgctt tgttttcagt ccatgcagca aggaatgctt gcaaaaccct
      481 gaacgtgctc tcaattctag gtctgccagc tctatcagca aatatagtcc atataattcc
      541 aagtaataag agagaagaac cgaaaccaag agcgattggg gttgttatag cctcaaaata
      601 aaaagtaaaa ggcaaaaaag caaataagaa aagcagcggt gaaataaagg aaaccggtat
      661 tgcattactg agagttgcac caaaaacaga agtaaaaatt cctgtacgta acccaattgc
      721 taagaacatc ccttcaacaa tatagtttgt ggtaatctca ttctttgata acaatatatc
      781 tgaagcaatt ccaagcagta ttgttaaagc ccacagaaga tttgcaaacg cagagacatg
      841 atatatcttt gtaatcttgt tgttcggagt tctctgtaat aaaaaaaaat caagaaaagc
      901 tgctcctgta gttgtcatca atcctaacag caaatgaaaa acaaaaatga accaatccgt
      961 tttaagaaga tagaaatggc atgtgaggat aataatggta gaacttagaa tagatatcag
     1021 aaaagagaat ttatatgatg atgggtttaa ccttgtaaga gaccatcttc gatgaatatt
     1081 tgatacacta tcagaatgag gatccaatat taatagtcat tattagattg gaaagataat
     1141 cctaattaaa atagatattc ctattatggc tccagtgata cctaatacga tttcaggctt
     1201 tatttttatt cctttggttt cgtcttcaaa gaacctcaat aatcctgcac tagaagcagg
     1261 caaaggggcg ttcttcttct tagtcataac agatcaaaag gttgtaatca ggctttaaat
     1321 agattacgtt ttaggtttgc tctaatcatc tttttcattt gctattgaaa gatctactat
     1381 atactttctg ttcaggttat tggataaaga attaaagtaa aaggatagaa gtattcatag
     1441 tagatgaaat ctaagatgac atatttagat ttctaataat agaaattttt atatctgtta
     1501 gttgtttgtt tcgcaaactt aaacatatat ttatttagca ttcttgcggt attttatgaa
     1561 atttgatctc tgtgtaaagg gtataaaaat aaggtaaatt gatattatct tgtacaaccc
     1621 tcatgctatt tattcgattc ctatcttagt tttctgttat ctatcgcatc tgacgtttta
     1681 acatcgaact tgttttttaa ttgcctagtt ttttcaataa ttctaatata taattcaaga
     1741 agatcagcct tttttttctc ttcgccaaga tcttcgtcat caagcttatt tatcagattt
     1801 acaatcttat cgataacttt atcttctata aattctagtg ggttactctt agaatctcct
     1861 ttactttcaa atatagatcg ctgttttgaa tgtattgatg atacatcttt agaccttttc
     1921 tgttcatagc cgcagttaat acacgtaatt acctccttga atttgacttg aacacctcga
     1981 cattttgggc aagcttcatt tattagcgat gcgcctcttg taagtaattc tgctgcattc
     2041 tttattgctg atgtttcata tgatctcata tcatctgtgg acatttagta tatttagaac
     2101 cctaattcta taattctttt tgtcttaatc gggaaggctt aataatagga tctgacaaat
     2161 agcattatac tataagatgg cggttatatg caaaaaatgt ggtctcccag acgatctttg
     2221 tgcatgtggg gaactcgaga aggaagatac tagagttgtc gtccgccttg aaacaagacg
     2281 tttttcaaag acaactacta tgatagaggg catcgaccca aaattaagcg atatgcaacg
     2341 tattgttaaa gaattaaaga gtcgatttgc atgtggagga actgcaaagg atggtttcat
     2401 tatgttgcag ggagatcata gagacgatgt taaaggatat ttggttaaaa tgggattcaa
     2461 tgaatcagct atagaagtac aataagcaat tgtgaactat aaaggactag ttttaacaat
     2521 agagtattac aatcgtttta attcgttttt cttctattaa cagaataagt tgatattttg
     2581 aattatgttg ataatactac gtctttaaga tattgactca ttctattgtc cgtgtccacg
     2641 tcaatacaaa tttgatgctt ataaaagaaa ggcaattgat acacatatta ttttataata
     2701 acgaacagga tattcttagg ctcaaatcat tttttaa
//
LOCUS       DATAAS010000225         3520 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5102138, whole genome shotgun sequence.
ACCESSION   DATAAS010000225 DATAAS010000000
VERSION     DATAAS010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3520)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3520)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3520
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5102138"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..421)
                     /locus_tag="VHF08_03600"
     CDS             complement(<1..421)
                     /locus_tag="VHF08_03600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEX2067765.1"
                     /translation="MFIYPRNNKHILMSHPGFLQELSVSRIHHPINQLRMDLDNLQDL
                     AMSIKQHGLLQPIVVRPKQHEYEVVAGNRRLAAIRLLKARRISCHIVELSDKEAYEVA
                     LVENVQHKTMNSIEEAMAFNHYVESFGWGGISELARRI"
     gene            1364..2290
                     /locus_tag="VHF08_03605"
     CDS             1364..2290
                     /locus_tag="VHF08_03605"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: protein motif:HMM:NF012298.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004674 - protein serine/threonine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006468 - protein phosphorylation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine-protein kinase"
                     /protein_id="HEX2067766.1"
                     /translation="MKYIIKRQISTGSFGTIYEVLSEDDNKVYALKELTNIDTVTKQR
                     FEREIKALSQLDHPNIVKIIQWNIGGDPPNFNPYYVMEYLSGGSLRQHMDEKFDSDEK
                     YYFDVKWTINSIILPVCNALAQAHSSNIYHRDLKPSNIMFTDATKSTIKITDWGLVKV
                     EDLSSTVNDDNNSSSSSSSSSSAVNIDRKSELTAIVSEGNIGGTPDYCSPEQWFASVN
                     DNYRLIDGRTDIFSLGIIFYEMLTRRRPPPYDLNNPIMSRPAVDPPSKDNLLISPQLD
                     QCILKMVNLNPENRQQSIWDLISEIETLPDNY"
     gene            complement(2429..>3520)
                     /locus_tag="VHF08_03610"
     CDS             complement(2429..>3520)
                     /locus_tag="VHF08_03610"
                     /inference="COORDINATES: protein motif:HMM:NF018234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX2067767.1"
                     /translation="GDTESWYNEWLKTADRVYKYAEYCNSVGHKKSAREGYLRASTYY
                     QNGAAFYLDINPSDSRIVPTWQKGVESFSKAAKLFSPPIETIEISYEGITIPGYFYKV
                     DNDDNARRPTVILSTGLDGSQEELYFLGAAAALQRGYNCITYEGPGQGSVIRNQKLPF
                     RPDWEKVVTPVVDFALNRNQVDPKRIALIGYSMGGYLAPRAAAFDDRIMACIADDGVF
                     SIYEAYMRHLQMIHNEIKNGHDHIVNKVIETIMHFDIGTRWKITHSMWVFGAKSPLEL
                     IQKISEYTMEGIEHKIKCPTLLLAGEKDASFPGQAQMLYDLLKCPKKYILFTTEEGAE
                     DHCHPVALSLANQRIFDWLDETFGIRTRS"
BASE COUNT         1149 a          613 c          577 g         1181 t
ORIGIN      
        1 caatgcgtct ggctagctca gaaattccac cccatccaaa actttcaaca tagtggttga
       61 atgccatagc ttcttctatg gaattcattg ttttgtgttg tacattttcg actaatgcta
      121 cctcatacgc ttctttatca gatagttcta ctatatgaca actaatcctt cttgctttaa
      181 gaagccttat tgcagcaagt ctacggtttc ctgcaacaac ttcatattcg tgttgttttg
      241 gtctgactac aatgggctga agcaatccat gttgtttgat agacatggcc agatcttgta
      301 gattgtccaa gtccattcga agctgattaa taggatgatg gatcctagat acgctaagtt
      361 cttgtaggaa gccaggatgg ctcatcagaa tatgtttatt atttcgagga taaataaaca
      421 taatagcaca aagacaaata gaattgaatt tgtatgatgt tctgataaat aataaatatc
      481 atttatttag ctcaacgttc ctgcttgaat tattttatat tcagcaattg tacttggtag
      541 tgagccacaa tcgattgtat tagctggctt gcttgtttac gcatttattt tggcattaag
      601 aatgagcaat acatctgaat caaaaaagca agaaataaca agatggtagg gagagtcaaa
      661 aatgactatg tctgatatag aatgtcataa tatgatgaag aggcagttgc ctcgtagtaa
      721 tagtatgtga tagtcagagg attaaaggcc atatcttaat tgattcattt ttctgccacc
      781 ttcaattagt aatattagat tttaatgaaa taatattcaa tataataatc agccaaattt
      841 ggttcataag ccttgggcct agttttagcg tcaaatgtgt tccgaatctg accaggctca
      901 ttgaactatc tttacatata accaaataga atgatcccct ctaccagcaa agctcaaatc
      961 cctccgaacc agcttcatta gtctatcatt ttatagaact acaccatgat gatatcataa
     1021 taaatgtcta ttgaggttgc tatcgattcc ctactagttc gatcaaggtt atctccttat
     1081 gcaaaattca aaatggaatt aaatcaaaag aagtataaag acaatatctc aatttattag
     1141 aaagattctt agatttctgt aagtttaaag gccttgatat agaacaaaaa gctatcaaat
     1201 tatgtgattt tgtcagacac ttaattattt gaatgacttt tcagtatgac acagtcttaa
     1261 gagtttagta aagcaaattt cacaataaat atttctaagt gtccttctca aaattttaaa
     1321 gtattatacg tctgtattct gtattatagc ttgtccaacc taattgaaat atattattaa
     1381 aagacagata agtactggtt catttggaac tatatatgag gtactaagtg aagatgataa
     1441 caaggtttat gcattaaaag aattaacaaa tatagataca gttactaaac agcgttttga
     1501 aagagaaatc aaagcactat cacaattgga tcatccaaat attgttaaaa taattcaatg
     1561 gaacatagga ggtgatcctc caaattttaa tccttattac gtaatggaat atcttagtgg
     1621 cggttccctt agacagcata tggatgaaaa atttgatagt gatgaaaaat attattttga
     1681 tgtaaaatgg actataaata gcataattct gcctgtttgt aatgctttag cacaagcaca
     1741 tagttccaat atttatcata gagacttaaa gccaagcaat atcatgttta cagatgctac
     1801 aaaatcaaca attaagatta cagactgggg acttgtcaag gtcgaagacc tctcttctac
     1861 tgttaatgat gacaataata gttcttcttc ttcttcttct tcttcttctg ctgtcaatat
     1921 tgatagaaaa tcagagttaa ctgctatagt gagtgaagga aatataggag gtactcctga
     1981 ttattgttct ccagaacaat ggtttgcatc agttaatgat aattacagat taattgatgg
     2041 acgtaccgat attttttctc ttggtatcat attctatgag atgctaacaa ggagacgtcc
     2101 accaccctat gatttaaaca accctattat gagtagacct gcagtggatc ctccttcaaa
     2161 agataattta ctgatatctc cacaacttga tcaatgtatt ctaaagatgg ttaatcttaa
     2221 tcctgagaac agacagcaat cgatatggga tttaatatcc gaaattgaaa ccttgcctga
     2281 taactattga aatagtttaa acagaaatat agacaatgct gattctaaat ctactaggtt
     2341 ccggaattgt tgcactgtaa gttagagata aggcaagttc ataaagctgc aacaacaaag
     2401 aatgtcaaat acgatcctga ggaaaaattt aagatcttgt tctaatccca aatgtttcat
     2461 ctagccaatc aaatatacgt tgattagcaa gtgataaggc tacaggatga caatgatctt
     2521 cagcaccttc ttctgttgta aatagtatgt attttttagg acatttcagc aaatcatata
     2581 acatttgtgc ttgtccagga aatgaagcat ctttttctcc agcaagaagt aatgtaggac
     2641 attttatttt atgttcaata ccttccatgg tatattctga tatcttttga ataagttcaa
     2701 gaggagactt ggcaccaaat acccacatac tatgagttat tttccatctt gttcctatat
     2761 caaaatgcat aattgtttca attaccttat ttacaatatg gtcatgtcca tttttaattt
     2821 cattatggat catttgaaga tgacgcatgt atgcttcata aatactaaat actccatcat
     2881 ctgctataca ggccataata cgatcatcaa aagcagcagc ccttggagcc aaatatcctc
     2941 ccatactata tccaattaat gctattcttt ttggatctac ttgatttctg ttcaatgcaa
     3001 agtctacaac aggtgttact actttttccc aatcaggtct aaaaggaagt ttttgattgc
     3061 gtattacgct accttgaccg gggccttcat atgttatgca attatatcct ctttgtaatg
     3121 ctgcagcagc acctagaaag tagagttctt cctgtgatcc gtctaagccg gtagaaagaa
     3181 taacagttgg tcttctggca ttgtcatcat tatctacttt ataaaaatat cctggaattg
     3241 ttatcccttc ataagatatc tcaattgtct caataggtgg cgaaaatagc ttggctgctt
     3301 tactgaatga ttcaacgcct ttttgccatg taggtacaat tctagaatca cttggattta
     3361 tatctaaata aaaggcagca ccattctgat agtaagttga agctctaaga tatccttcgc
     3421 gtgcactttt tttatgtcct acagaattac aatattctgc atatttgtat actctgtctg
     3481 cagtcttgag ccattcattg taccagctct cagtatcacc
//
LOCUS       DATAAS010000226         3473 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_792260, whole genome shotgun sequence.
ACCESSION   DATAAS010000226 DATAAS010000000
VERSION     DATAAS010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3473)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3473)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3473
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_792260"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..147)
                     /locus_tag="VHF08_03615"
     CDS             complement(1..147)
                     /locus_tag="VHF08_03615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067768.1"
                     /translation="MFGKAKCKLCGNNVRFVLKHLKEKHPETLNDKDVIQLKMSRIME
                     KYFV"
     gene            777..953
                     /locus_tag="VHF08_03620"
     CDS             777..953
                     /locus_tag="VHF08_03620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067769.1"
                     /translation="MFEEGGPSISLDMIIGMILGMACSPLMMKGIALFRRRRKLDKIL
                     HEIAEMREKNYQPI"
     gene            1604..2284
                     /locus_tag="VHF08_03625"
     CDS             1604..2284
                     /locus_tag="VHF08_03625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067770.1"
                     /translation="MAQQHQLTTLQIATFGSEGQDGIALGIRSFPVHKLVLICFSSDK
                     SKAEEFSRKIRTVLGLPVTITLVTKENVIRDTMERVNEILNLNGKEFQQVLMNISSGD
                     KLIGCAALSSAFINGIKAFGMDSTHTVPLLMPVLKLSYNEIISEAKIKILKAIDSAGG
                     VVDSLDQLEQASGYGKPLLSYHVQGSKDSKGLADLGLLEVEKGDRGKISAKLTTLGKL
                     LVTSNALS"
     gene            2421..2687
                     /locus_tag="VHF08_03630"
     CDS             2421..2687
                     /locus_tag="VHF08_03630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067771.1"
                     /translation="MKVCTTQILSYNAKKALVNGIIIGIVTTIVYLAVVVITTPNLPA
                     TAAINAVFKINSIVIFGLAIGIGTQVFISTYAKGLGCNLDKKKK"
     gene            2790..3020
                     /locus_tag="VHF08_03635"
     CDS             2790..3020
                     /locus_tag="VHF08_03635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067772.1"
                     /translation="MLPSIFGSTLSVILIEYSKVLSYIGLAIVFGFAGFSALTLKREL
                     DRRTDTKNNFNQLKNSHTVVKEYDNEKGGSRI"
     gene            3017..>3473
                     /locus_tag="VHF08_03640"
     CDS             3017..>3473
                     /locus_tag="VHF08_03640"
                     /inference="COORDINATES: protein motif:HMM:NF022818.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3179 domain-containing (seleno)protein"
                     /protein_id="HEX2067773.1"
                     /translation="MSHNNRLIKKNVDKKAIAVIAMLSIFGIILSVIIIVPIINSNPT
                     SVSITAVDNTNSAAVAVTAEEKEKSIVPLDQIVSGGPPPDGIPSIDNPKFISVQEASK
                     FLEDSELVLGLNINGDIRAYPLQILVWHEIVNDKVGGVPVCSDLLSIMFY"
BASE COUNT         1187 a          508 c          577 g         1201 t
ORIGIN      
        1 ttagacaaag tatttttcca ttattcttga catctttaac tggataacat ccttatcatt
       61 taatgtttca ggatgttttt cctttaggtg ttttaataca aatcttacat tattgccaca
      121 taatttacat tttgcttttc caaacatgat aatacattta gtattaatta tctctcttat
      181 tgtaaacttt tgtgttgtat gtcaatcaaa agagagttaa gaataaaaaa ataatatgat
      241 cgctttgaaa ttttgctatt taagtagagt ataaattata actgcttctt caataagtag
      301 aatagtaact aataatttct tgtccgtcta gtctcttctt ttttctattt tatctatgtt
      361 atatctaaat aagagaaaag attgaatgaa tatttattcc actccttctc acatacggct
      421 gcatagattc aatagaaata atcaaacggt taaaaattct attattattg gatgataatt
      481 tgcttcttac ttcctgctaa ggtaaaagtc ttcgttcttt ctcgaatgaa gccatttatt
      541 agttgcctgt aataatactt tttttcttga acacttagag gatatccaat tttgtaataa
      601 tgtgttctcc taatatgttg tggtatatca catcatatca ttcatagaat ctttgctatt
      661 tatcaattaa aaactgccag aatttggatt gaatttttct ctttcataac tgggaaagca
      721 ctctgagtca tctcttgatc atattataag atatatacca ccataatgaa taagtcatgt
      781 ttgaagaagg tgggcctagt atatcattag atatgataat tggaatgatt ttaggtatgg
      841 cctgtagtcc attaatgatg aaaggaatcg cgctatttag aaggagaaga aaacttgaca
      901 agatattgca tgaaatagct gaaatgagag aaaaaaatta tcagcccata taaaaattaa
      961 gttttatatt gaggacaaat ttttaacatc agatacttat gagtggctaa aaaattaaat
     1021 aaaatgatat tttcaactta aagtgcaatc attctagata gaagacaaat aataataatt
     1081 gtcaatgact aagacagaag gtataacgac gatttgtttg gcatgaactt tttatagctt
     1141 ttgatataga taatctaatc ttagacgaag taattgcatt atactctgat gtttaggaat
     1201 ttgggcaagc aattacgaat aagggaaaaa attcaattag ttatagtata gctattttat
     1261 gcgttttaga aagatatatg ttcaataatt taaactaaag cataatctat agtataatac
     1321 ttatttggaa aatcatatat cttataactc gtgaacaata ataagaaata agaacaagaa
     1381 ggttcacaat cgacaaattc tatctttcat cttctggtat tgattttgac gtaaaggctt
     1441 tgattaaggc tattaaaata tgaaaagaat ggcgatatta gttgatcaaa tcattgggag
     1501 gtggcagcaa tactcctttt tctttaaccg ttaaagtcag tttctaactg ttaaagatat
     1561 gtcttattag catcaatgcc ataacccatg acagaataat attatggcac agcagcatca
     1621 gttgacaaca cttcaaattg ccaccttcgg ttcagaaggt caagatggaa tagcattagg
     1681 cataagaagc tttcctgtcc ataaattagt tttaatttgt tttagctcag ataagagtaa
     1741 agctgaggaa ttctcaagaa aaattcgaac cgttctagga ttaccagtta caataactct
     1801 tgtaacaaaa gaaaatgtta tcagagatac tatggaaaga gtaaacgaaa tcttaaatct
     1861 caatggtaaa gaattccagc aggttctgat gaatataagc tcgggagaca aattaattgg
     1921 ttgcgctgct ttatcttctg catttataaa tggtattaaa gcatttggaa tggattcaac
     1981 acatactgta ccattactaa tgcctgttct caaattaagc tataacgaga taatatcaga
     2041 agcaaagata aaaattctaa aagctattga cagtgctgga ggagtggttg atagcttgga
     2101 tcaattggaa caagcatctg gatatggaaa accattatta agttaccatg tacaaggaag
     2161 taaagattct aaaggtctag ctgatttagg attactggaa gttgaaaaag gcgatagagg
     2221 taaaatctct gcaaagctta caaccctggg aaagcttttg gtaacaagta atgctctaag
     2281 ttaagttatc tcttggcata ttaactaatc aattttcttt tctaaagttg atagatattc
     2341 tctcctttct ttcaacgttc aagttatttt ttaacggtta gagcatcacc ataaatagca
     2401 gaattctgat tagttactat atgaaagttt gcactaccca aatactcagt tataatgcta
     2461 aaaaagcatt agtaaatggg ataattatag gtattgtcac tacaatagtt tatctagcag
     2521 tagttgttat tacaacacct aatcttcctg ctactgctgc tattaatgct gtttttaaaa
     2581 taaactctat tgtaattttt ggattagcaa ttggaatagg aacgcaggtt tttatctcta
     2641 cttacgctaa aggcttgggt tgcaatttag ataaaaagaa aaaatgattt cttggtacag
     2701 gttcaggaag tacttctctt agttccttct tttctttctt ctctctagta cctctaggat
     2761 gttgtggtag ttggctttta gtattatcga tgctgccttc aatttttggt agcactctat
     2821 ctgtgattct aatagaatac tctaaagtac tttcatatat aggtctggca atagtatttg
     2881 gctttgcagg cttttctgca ctaacgctta agagggaatt agatcgcaga actgatacaa
     2941 aaaataactt taatcaacta aagaatagcc ataccgttgt taaagaatat gacaatgaga
     3001 agggaggatc tagaatttga gtcataacaa ccgtctcatc aagaagaacg tcgataaaaa
     3061 agcaatagct gtaatagcca tgctatcaat atttggtatt atattatcgg taattattat
     3121 tgttcctata atcaatagta atcccacttc tgtttctatt actgctgttg ataatacaaa
     3181 ttcagcagca gtagccgtca ctgctgaaga aaaagaaaag agtattgttc ctctagatca
     3241 aattgttagt ggaggaccac cccctgatgg cattccatca attgataatc ctaaatttat
     3301 atcagtacaa gaagcttcta aatttttaga agactctgaa cttgtacttg gtttaaacat
     3361 taatggtgat attagagcat atcctcttca aatcttggta tggcatgaaa ttgtaaatga
     3421 taaggtgggt ggtgttcctg tttgcagtga cttactgtcc attatgtttt act
//
LOCUS       DATAAS010000227         3883 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4564743, whole genome shotgun sequence.
ACCESSION   DATAAS010000227 DATAAS010000000
VERSION     DATAAS010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3883
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4564743"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(663..2339)
                     /gene="ilvD"
                     /locus_tag="VHF08_03645"
     CDS             complement(663..2339)
                     /gene="ilvD"
                     /locus_tag="VHF08_03645"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004160 - dihydroxy-acid dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009097 - isoleucine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0009099 - valine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEX2067774.1"
                     /translation="MILPSRKSIEGPARAPHRAMYKAMGLTIEDLNRPLIGVSSTCNE
                     ATPCNIHLGRLAQNVKKGVKDSKCTPREFTTIAVSDGIAMGHEGMKASLVSREVIADS
                     IEIMMRAHQYDGIVGVSGCDKSLPGTLMGMARLNLPSIFVYGGTIMPGTWNDKQVTIQ
                     DVYEAVGRYDSGKITLEQLTSLENVACPASGSCAGMYTANTMACISEAIGMSLPGSAS
                     PPAESDRREAICYNTGKAIYNLIENNIRPKDIMSFEAFENAIAIANAIGGSTNIVLHL
                     LAIAKELGIKLKMNDFERIRKQTPHIAYMRPGGAYVMSDLDRAGGVPVILNYLLKRGL
                     IDGEVMTVTGNTLRDNIESKRFTDSVDTRIIKQMDNPIHKEGTLKILKGSLAPQGAVI
                     KIAGINTTKFIGSARVFEDEEHAFDAISKRKIKEDDVVVIRYEGPKGGPGMREMLAVT
                     AALVGQGLGDKVAMVTDGRFSGATRGFMVGHVAPEAMVGGPIAMVKNGDEIVIDINKG
                     KIEIMISKNEMIKRESEWRPLKPRYTYGALAKYASLVQSASEGAVTLPLR"
     gene            complement(2415..2603)
                     /locus_tag="VHF08_03650"
     CDS             complement(2415..2603)
                     /locus_tag="VHF08_03650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067775.1"
                     /translation="MGETIELENFDINFSFRCPKCDYLNDEISINELSSGNAECGMCE
                     TTFKVDGIDAIKITAILD"
     gene            2792..3247
                     /locus_tag="VHF08_03655"
     CDS             2792..3247
                     /locus_tag="VHF08_03655"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEX2067776.1"
                     /translation="MANSPCVFCSIIAGKLPKAILYEDANILALMDKYPINVGHTLVI
                     PKIHYDNLLLMPPHEVGKLYAIIPVIAKAVVCTVKADGFNVGQNNGRAANQIVPHVHV
                     HIIPRFSHDSPDGKWPVRRVAHYNELIGTADKIKLQLKLALKSDIISSI"
BASE COUNT         1202 a          727 c          622 g         1332 t
ORIGIN      
        1 ggaatctttt taacatgttt acgtctatat taattaatca ggaacataac aaaataatac
       61 atggagcagc cattaatgca cttgagtaga tttatagaaa gagggagaca aagaacgcaa
      121 aaatgcgtag cgatcatgct atttcttgtt tatttatgat ttaggaggct aaagagtttc
      181 tagtacgcct gtataaagca ataaactacg tattgtgctc aatagttcga caatctttag
      241 tagatcagat cattatcgat caatggcata ggcttaatat gttaatcata aaaataaaaa
      301 ctatattata atggaatatg atgcatcatt gggataaaag aaaaatgtag aggaatggtc
      361 aatgctttac ttgttttagt ctcgattatc atttaaaata tactaatcta tcagcagaca
      421 ttttatcttc agcatctcta taagacagtc gataaactat ccttaactga gattagaaac
      481 cagaatcctt tgagtatgtc tgacgatatc ctaataattc agagcactga ttaatctttt
      541 gatcatactt ttgatgattt tatgcgattt aaatggtgta gtaaatggtt agaaaaactg
      601 aacaaagtat gatgaatgat atgattggca ttttcttgat gaattgcaaa cagggattat
      661 tcctatcgta gaggaagagt aactgcaccc tcagatgctg attgtacgag agaagcatat
      721 ttagctagcg ctccgtatgt atagcgaggt tttaatggcc tccattcact ttcccgttta
      781 atcatttcat ttttggatat cattatttct atctttccct tattaatatc aataactatt
      841 tcatcaccat ttttaaccat tgcaattggc cctcctacca tggcttctgg tgcaacatga
      901 cctaccataa atccccgtgt cgcacccgaa aatcttccat ctgttaccat agcgactttg
      961 tctcctaaac cttgaccaac taatgcagct gtaactgcta acatttccct cataccaggg
     1021 ccgccctttg gcccttcata tctaatgaca acaacatcat cttcttttat ttttctcttt
     1081 gatattgcat caaatgcatg ctcctcatct tcaaatactc tggcacttcc aataaatttc
     1141 gtagtgttga tccccgcaat ttttataact gccccttgtg gggcaagtga accttttagg
     1201 attttcagtg taccttcttt atggataggg ttgtccattt gtttgatgat ccttgtgtca
     1261 acactatcag tgaatctttt tgattcaatg ttgtctctca atgtattacc tgtaacagtc
     1321 atcacttctc catcaatcaa tcctcttttt agtaaataat tcagtataac cggaacacct
     1381 cccgctctat cgagatctga cataacataa gctccgccgg gtctcatata ggctatatgt
     1441 ggagtttgct tacgtattct ctcaaaatca ttcattttta attttattcc taactcttta
     1501 gctatagcca agagatgtaa tactatgttt gttgaacccc ctattgcgtt tgcgattgct
     1561 attgcgttct caaatgcttc aaagctcatt atatcttttg gccttatatt attttcaatc
     1621 aaattgtaaa tggcttttcc ggtattatag caaattgctt ctcgtctatc actttcagca
     1681 gggggtgaag cgcttcctgg caaagacatt cctattgcct cacttataca tgccatagta
     1741 ttggcggtat acattcctgc acatgaacca gaagcaggac atgcaacatt ttctaaactg
     1801 gtaagctgtt ccaatgtgat tttaccagag tcatatctgc caacggcttc ataaacgtct
     1861 tgaattgtta cctgtttgtc attccaagtg ccaggcataa ttgtaccccc ataaacaaat
     1921 atcgacggta aattaagacg tgccatgccc attagagttc ctggaagact tttgtcacac
     1981 ccagaaactc ctacaatacc atcatattga tgagcacgca tcataatctc aatagaatct
     2041 gctatgactt ctctgctgac taatgaagct ttcattccct catgtcccat agctattccg
     2101 tcagaaacag ctattgtggt gaattccctt ggagtacatt tcgaatcttt tactcctttt
     2161 ttgacatttt gagcaagcct accaagatga atattgcagg gtgttgcttc attgcatgtt
     2221 gatgatacac ctattaatgg cctatttaaa tcctcaattg tgagacccat tgctttatac
     2281 attgctctat gaggtgctct agcgggacct tctatcgatt ttctgcttgg tagtatcatc
     2341 aatgtatagt tctttccaat tgtatatttt aagattcttt aatacttggg ttttgcatta
     2401 agtatatcaa taaattaatc aagtattgct gtaattttta tagcatctat tccatccacc
     2461 ttaaaagtag tttcgcacat gccacattca gcattaccac tagaaagttc gttgattgag
     2521 atttcgtcgt tgagataatc gcacttagga caacgaaatg agaaatttat atcaaagttc
     2581 tctaactcta ttgtttcgcc catagtctat caataaatgg atttactata tttaaaattc
     2641 gctactctga tgataaaaac agaggataat tgcaatgata aataacgaat atcaatatgt
     2701 tgtcatttga attactatta aattttatta aaaaataagc actactcata aataaatata
     2761 taatgcctta gaatggaaag taaattacat aatggctaac tctccttgtg ttttctgttc
     2821 gataatagca ggcaagctgc caaaagccat attatatgaa gatgcaaata ttcttgcatt
     2881 gatggataaa taccctataa atgtaggtca tacgcttgta attccaaaga tccattatga
     2941 taatttgtta ttgatgccgc cacatgaagt aggtaaacta tatgctataa ttcctgttat
     3001 agcaaaggcc gtagtatgta ctgttaaagc agacggcttt aatgttggac aaaataatgg
     3061 cagagccgcc aatcagatag ttcctcatgt tcatgttcat ataatcccta ggttcagtca
     3121 cgatagccca gatggaaaat ggccagttag gcgcgtcgcc cactataacg aacttatagg
     3181 aactgctgat aaaatcaaat tgcaacttaa gcttgcttta aaaagcgata ttataagtag
     3241 catttagact ataaattgaa ttagtatcaa agattctttt accatttatt atctatatca
     3301 ttttgatgtc ggttacaaaa ccagtgttaa taatcgataa tataaagaaa cgttcagcat
     3361 taattttagc ttcacatcat tgtaaattct tttaatgggg gacctataaa gcctactcga
     3421 cataggattg ttcttacatt tttgtttttt atcattaaag aattatcacg tttcaatatt
     3481 gtgtagtcct cttctacaga tatttgatgg tatttctttc aatagaatgt gaagaacttt
     3541 ttagctttca ttgtttttct ttaaatttga gcggcaatat tagattatat tcctttatta
     3601 ttatcaagaa tgagtatgtg aatatcgcta tacttaatat gtacggtatc ccatacacta
     3661 ttctactaaa ataggtcaca tctgaaaata gattcaaggt atcatctatg aaaaaccaaa
     3721 tatagaccag cataatcacg gtaatcaaaa aaaacaaaaa aggtattact agtacaaaga
     3781 aacgtgctat gtggttttgt gttggcttta aaggatcaat ccataaaggt gcattgacaa
     3841 ctatgtgctc attgactagc atatcgctct cggaatatct tta
//
LOCUS       DATAAS010000228         2484 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3484039, whole genome shotgun sequence.
ACCESSION   DATAAS010000228 DATAAS010000000
VERSION     DATAAS010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2484)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2484)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2484
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3484039"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..422
                     /locus_tag="VHF08_03660"
     CDS             <1..422
                     /locus_tag="VHF08_03660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067777.1"
                     /translation="KMTGLPKDYARRMAQREYGETIIKIEKYDLERFIKIANDMGLKL
                     IQGGRFFDITVGNDKGKAVEILMNLFRRKYHNDVKFFGVGDSENDVSMLNRMDLPMPV
                     QRPDSSWSNLEVKDIVKIQGIGTEGWKRAFNRIMELD"
     gene            complement(550..2454)
                     /locus_tag="VHF08_03665"
     CDS             complement(550..2454)
                     /locus_tag="VHF08_03665"
                     /inference="COORDINATES: protein motif:HMM:NF017442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF790 family protein"
                     /protein_id="HEX2067778.1"
                     /translation="MLPLQLLRTRITDKGTNIVPRFCTADDSVLHLAAKIIKEFEESW
                     KNKEKKSFLTERIALIESEYNDYKLARGFYTLPERRCIFTKIKEIKTESKDIASNVYV
                     NNDNLHDPVNIRKELFEESSKRGFALTEFGRREIIDTVASKINVPSNDIVDVMWSDLE
                     ENLVLEWFDAISPEQLLAWYNLSLMQTLLFNCTKLEFSVTGGSNWKYILRGIKRLGLM
                     YNLQYIALEDEKQSTHIDEIDYDNRDIKFINTNNTDAKNNPIIICSLDGPLSIFKLTD
                     RYGTSIAKILPSIISSDTWSLKAWIVRKTMSLGKKIYEFKISNIDAPPLSREPYYNKE
                     NDKEKKRTLYTAKESSQLIYFDSGVEEKFSTRFEQSATGWKLIREPDPLILSNGKALI
                     PDFAFEKYGTRIYLEIVGFWTKEYLEKKIQKIADLTKDTRTGNNAVDFFIAVNDAGYA
                     SSNSNIKEKLAWEKIISSISKERLIFYKNDKVPVKPFLDYLKSIDVKMIETLANNNSV
                     KLLTEIENYAFNNTAIISIDELADKYNLPIESALRIITTSHKNDKSSSISNPNDKYVV
                     AGTYLISKSKLSEFGSLFDGITKFTDACSILEQNNIPESCHMDIISKIGYDVLWQSMD
                     CSTAIIKRRI"
BASE COUNT          753 a          430 c          418 g          883 t
ORIGIN      
        1 ccaaaatgac aggtttgcca aaggattatg cacgaagaat ggctcagcga gaatatggcg
       61 aaactattat aaaaattgaa aaatatgatt tagagagatt tataaaaatt gccaacgaca
      121 tgggtctaaa gctaattcag ggtggacgat tttttgatat aacagtaggc aatgataaag
      181 gcaaagcagt agagatattg atgaacctct ttagaagaaa atatcacaat gacgtaaaat
      241 tttttggtgt gggtgacagt gaaaatgatg tttctatgct gaatcgtatg gatctcccaa
      301 tgccagttca aaggccagat agttcgtggt caaaccttga agttaaagac attgtaaaga
      361 ttcaaggtat aggtacagaa ggttggaaga gggcattcaa tagaattatg gagttagatt
      421 agatgctgag atatgctata tctataacca tacacatcat ctgtcagtaa ctctagcagc
      481 attgagttca tcttcgaatc cttcaatgta cacttaattt ttcatattgt aaaactagaa
      541 agtttcttat tatatgcgcc ttttgataat tgcagtgctg caatccatac tctgccatag
      601 aacatcatat ccaatcttgg aaataatatc catatgacaa gattctggta tattattctg
      661 ctcaaggatt gaacaagcat ctgtaaattt agttattcca tcaaatagag acccaaattc
      721 acttaattta gactttgata tcaaatatgt acctgctaca acatatttgt cgttaggatt
      781 actgatacta ctactcttat catttttatg tgatgtagta ataattctta aggcagattc
      841 aattggcaag ttgtatttat ctgctaattc gtcaatggag atgatagcag tattattgaa
      901 agcatagttt tcgatttcag tcaataactt tactgaattg ttgttagcaa gcgtttcaat
      961 catctttacg tcaatagact tcaagtagtc aagaaaaggc ttgactggaa ctttatcgtt
     1021 cttataaaag atcaatcgtt cctttgatat agaagaaatt atcttctccc acgcaagttt
     1081 ttccttaata ttagaattag aggatgcata acctgcatca tttacagcta taaagaagtc
     1141 tactgcatta ttaccagtcc gtgtatcttt tgtaagatcg gctatttttt gtattttttt
     1201 ctctagatat tctttggtcc agaatcctac gatctcaaga tatattctcg taccgtattt
     1261 ttcaaatgca aagtcaggaa taagtgcctt gccatttgat agaattaatg gatcaggctc
     1321 ccttattaac ttccaaccag tggcagattg ctcaaatctg gtcgagaact tttcctctac
     1381 tccgctgtca aagtaaataa gttgcgaaga ttctttagca gtatataagg ttctcttttt
     1441 ctctttatca ttttctttat tatagtatgg ttcacgtgat aaaggaggag catcgatatt
     1501 tgatatttta aattcatata ttttctttcc caacgacata gtcttcctca caatccaggc
     1561 ctttagggac catgtatcac tagaaataat cgatggaagt atttttgcga ttgatgttcc
     1621 gtatctgtca gttaatttga aaatactcaa aggaccatct agagagcaga taatgattgg
     1681 attgttcttt gcatctgtgt tatttgtatt tatgaacttg atgtctctat tatcataatc
     1741 tatctcatct atatgggttg attgtttttc atcctctaat gctatatatt gtaaattata
     1801 cattagcccg agtctcttaa taccacgtaa tatatacttc cagtttgaac ccccagtgac
     1861 agagaattct aattttgtac aattgaacag tagtgtctgc attaacgaca agttatacca
     1921 agccaatagt tgttctggac ttattgcatc gaaccattct aataccaagt tctcttctag
     1981 atcgctccac atgacatcta ctatatcgtt agaaggtacg tttattttag atgcaacggt
     2041 gtcaattatt tctcttcttc caaattctgt caatgcaaaa cctctctttg atgattcttc
     2101 aaataattcc ttcctgatgt tgactgggtc atgaagatta tcgttgttaa cgtaaacatt
     2161 actggcgatg tcttttgact ctgtttttat ttcctttatt ttggtaaaga tgcatcttct
     2221 ctcaggaaga gtataaaatc cccttgcgag cttatagtca ttatactcgg attcaataag
     2281 agcaattctt tcggtaagaa acgacttctt ctctttattt ttccatgatt cttcgaattc
     2341 tttaatgatc tttgcggcta aatgcaaaac gctatcgtca gctgtacaaa atcgtggaac
     2401 aatatttgtt cccttatctg ttattcttgt tctaagtaat tgaagtggca gcatattgta
     2461 tttagacttc actcattcct gttt
//
LOCUS       DATAAS010000229         1593 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1872898, whole genome shotgun sequence.
ACCESSION   DATAAS010000229 DATAAS010000000
VERSION     DATAAS010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1593)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1593)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1593
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1872898"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1201)
                     /locus_tag="VHF08_03670"
     CDS             complement(<1..1201)
                     /locus_tag="VHF08_03670"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEX2067779.1"
                     /translation="MLDNKSSNNNCALCGKILFSKKEEKSKAVEEEKEEIINGIHFRF
                     DTKDCAIMFKRFRSVYGDSKFKELLGQEQYISDPFWNKVIPTEQEIREIEKEESEKSE
                     NIILQIIRDPAEVQKLGFELIRSAKEEISIIFSTANAFYRLIRVGGGQLLREVTMAKR
                     GLNIRILTPPDERIKEVSSELKQQLKKIEVRHIEESLQTKVTVLIVDRKHSLSIELKD
                     DTNDSVYEAIGLATYSNSKSTVVSYISIFESLWKQVELIERVTKLSEDLKYQENVHRQ
                     FINVAAHELRSPIQPILGLAEILRSRKEKETEKQDELLAIIIRNAKRLKELTENLLDI
                     TRIENQSLNLHKEVVNVDDLIIKTLEDIKSQTNYKKSIRLIYDDSKKESSSPLLVEAD
                     RGRLIQVI"
BASE COUNT          454 a          283 c          209 g          647 t
ORIGIN      
        1 aaataacttg aattaatctt cctctatctg cttcaacaag aagaggagaa gaagactctt
       61 ttttagaatc atcatatatt aaccttatac tctttttgta atttgtttga cttttaatat
      121 cttctaatgt ttttattatc aaatcatcta cgttaactac ttccttgtga agatttagtg
      181 actgattttc aattctagta atatctaaaa gattctctgt tagttccttt agcctttttg
      241 catttctaat aataattgcg agtaattcgt cttgtttttc agtctctttc tcctttctag
      301 atctaaggat ttccgccaat ccaagtatag gttgaatagg tgatcttaat tcgtgagcag
      361 ctacattgat aaattgtcta tgcacatttt cttgatattt tagatcttcg ctaagtttag
      421 ttacgcgttc aattaattct acttgtttcc acagactttc aaatattgaa atatatgata
      481 ctacagttga tttactattg gaataggttg ctaatcctat agcctcatat acagaatcat
      541 ttgtatcatc tttgagttct atagacaatg aatgtttcct atccacaatc aaaactgtaa
      601 cctttgtttg tagggattct tcgatatgtc taacttcaat tttttttagc tgctgtttta
      661 attctgatga aacttctttt attctttcat ctggtggtgt gagaattcgg atattcaaac
      721 ctctttttgc catagtcact tcccttaaca actgaccgcc tccaacacgt attagtctat
      781 agaatgcatt agcagtcgaa aatattatcg atatctcttc tttagcagat ctgatgagtt
      841 caaagcctag tttctgtact tcagcaggat ccctgataat ctgcagtata atattttcag
      901 atttttcact ttcttctttt tcaatttctc taatctcctg ttcggtagga attactttat
      961 tccaaaaagg atcagaaata tactgttctt gaccgagaag ttccttgaat ttactatcac
     1021 catatacgct tctaaagcgt ttaaacataa tagcacaatc ttttgtgtca aaacgaaaat
     1081 gaattccatt aattatttct tccttctctt cctctactgc cttggatttt tcttcttttt
     1141 tactaaatag tatttttcca cataatgcgc aattattatt tgatgattta ttatccagca
     1201 aatcgatcta ctccaaagag atatgcatta tcatcccttg atatctctcc tttgctataa
     1261 tcttttttta cgatggagta atctatcatt atcttatcct attagcctag ttgatttact
     1321 aagccatatt attgtttatg tttgtcatat catttgagca gtagttaatt atttactatt
     1381 tcaaattctg aatatcctag ttctattggt gaaacacaat attgttcttg tgataacatc
     1441 aaagtttata aaaacatata tacttcattg gctcatcatt ttatatagta atccttagga
     1501 tatttgcacc atcttcttcc tttcttatta ttagaatgtg tgtagaggag gtaaaaaata
     1561 tatagacaag cgcattgggt catattctcg aat
//
LOCUS       DATAAS010000230         2202 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3485695, whole genome shotgun sequence.
ACCESSION   DATAAS010000230 DATAAS010000000
VERSION     DATAAS010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2202)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2202)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2202
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3485695"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(134..724)
                     /locus_tag="VHF08_03675"
     CDS             complement(134..724)
                     /locus_tag="VHF08_03675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067780.1"
                     /translation="MNQFEFEQFLKFAEEEALSTKLDSEKIQDFILWCKKNNFEEIIL
                     RLSSEEKGGWSKNFCLDFTTTRIIVSKKRFLKKFVDLGYVAGLAPIPYMILSKKIKRS
                     YVKKQYNDPPEDIIKKDRSNYYIPYSDIQQFIIRKGIETTVTNMVGTMIMKNFLTIKT
                     VNKTYDFTLPVNKNGKFEQIHFWLSVVLPLDVTKLE"
     gene            complement(825..1949)
                     /locus_tag="VHF08_03680"
     CDS             complement(825..1949)
                     /locus_tag="VHF08_03680"
                     /inference="COORDINATES: protein motif:HMM:NF015226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0015204 - urea transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0071918 - urea transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urea transporter"
                     /protein_id="HEX2067781.1"
                     /translation="MAIPTYATGDPLLDFFYTLFNGIAEVPLFSSPITGILILAGVFL
                     ASRKAGVMMVLSGLIGAGMAILFGAPYGLVAFGLFGYNSILTGMALWSGPFVKANKAT
                     FFLSVFGAAATAVTWMAMAHLMGDLFILDGITNSWAIPGFTSSFIFTTWALMYATKRF
                     GHDIWPAPPPPPPQEELIRGSSNPVQTQDKNFKWTAKEFMIATLKGVSQVTFVENWKT
                     GIFWVVGLTLAFELAPILTGQNRPWFTNAYTAQWNEFSPLYLAGLMALIGSGIGVALA
                     ILTKLPTEEIRLGLHGFNQVLVMIALTSFIPLTPQSFLIAVFATVACSVIVMPALQRF
                     FGIWGLPALTGPFVFTAWVFLLGISGFENIPAGIGWSRPP"
BASE COUNT          690 a          408 c          363 g          741 t
ORIGIN      
        1 tcaaaatata gtaaaacttg agttatttta aagttcaaaa atttaagtta tatataaaat
       61 aaattattct ctcagagttg tttgttaatg tgattcttct agatatgctt atttagtcga
      121 tgtcgactaa attttattct aactttgtca catcgagtgg aagcacaaca cttagccaaa
      181 aatgtatttg ttcaaatttt ccatttttat taacaggtaa tgtaaaatca tacgtcttat
      241 ttactgtctt gattgtaaga aagtttttca ttatcatagt gccgaccata ttagttaccg
      301 ttgtttctat tccctttcta ataataaatt gctgtatgtc tgagtaaggg atatagtaat
      361 tggatcgatc cttttttatt atatcttctg gcggatcatt atattgtttc ttcacatacg
      421 agcgctttat tttttttgat aatatcatat aaggaattgg tgctaatcct gcaacataac
      481 ccaagtccac aaacttcttg agaaatctct tcttgctaac tattattcta gtagttgtaa
      541 agtcaagaca aaaattcttg ctccatcctc ccttttcttc agagcttaat cttaaaataa
      601 tttcttcaaa attgttcttt ttacaccata aaataaagtc ttgaattttt tctgaatcta
      661 acttggtaga taatgcctct tcctctgcaa attttaaaaa ttgctcaaat tcaaattgat
      721 tcattaacta atgtaaacac tagtctgagt aaattgtatg taaaggtata ttctatcatc
      781 tatttaataa aaagagaaga gagaagtttt ctcctttatt ctatctaggg tggtcttgac
      841 catccaattc ctgccgggat attttcgaaa ccagatattc ctagcaagaa cacccatgcg
      901 gtaaatacaa aaggtcctgt cagagcaggt agaccccata taccaaaaaa tctttgtaga
      961 gctggcatta caattacgct acatgccact gtagcaaata cagctatcag aaatgattgg
     1021 ggggtaaggg gaataaaact ggtaagagct atcatgacaa gtacctgatt aaatccatgt
     1081 aatcccaatc ttatttcttc cgttggtagt tttgtaagaa ttgcaagggc tactcctata
     1141 cctgaaccta taagtgccat caggccagcc aaatacagcg gtgagaattc gttccattgc
     1201 gctgtgtaag cgtttgtaaa ccatggtcta ttttgtcctg taagaattgg tgcaagttca
     1261 aatgcaagtg ttagaccaac gacccagaag attcctgtct tccaattctc aacaaatgtg
     1321 acttgtgaca ctccctttaa tgtagctatc atgaattctt ttgcagtcca tttgaaattt
     1381 ttatcttgag tttgaactgg attgctgctt cccctaatca attcttcctg tggtggaggt
     1441 ggaggtggtg ctggccatat atcgtgtcca aatctcttag tagcatacat caatgcccac
     1501 gtagtgaaaa taaaggaaga tgtaaagcct ggaatcgccc aggaattagt aatcccgtct
     1561 aagataaaca aatcccccat aagatgcgcc attgccatcc atgtcactgc agttgctgcc
     1621 gccccgaaaa ctgataagaa gaatgtagct ttatttgctt ttacgaaagg accagaccac
     1681 aatgccatac cagtcaaaat ggagttgtag ccaaataatc caaaagctac aagtccgtat
     1741 ggcgcaccaa aaagaatagc cattccagcc cctattaatc ctgataagac catcattaca
     1801 cctgcctttc ttgatgccag aaatactcct gctagtatga gtattcctgt tattggagaa
     1861 ctaaataagg ggacctcagc tattccatta aagagagtat agaaaaagtc cagtaatgga
     1921 tctcctgtag cataagttgg gattgccatg aaattttgtt ctgaggaagt attctttaat
     1981 catttgtaaa atatatttat ttattaacag tttgtatgtc ttgtttgaac tgctcatcaa
     2041 attatcagac aaaaagaaga agacttgcta ataagttgac atatacttta ataccattct
     2101 tttcctttca cagcggaata atttttcatt gtattagatg attgtaagaa agttagtcta
     2161 ttgctatact attaattctt tctaagcatt tatcattact cc
//
LOCUS       DATAAS010000231         2841 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3485996, whole genome shotgun sequence.
ACCESSION   DATAAS010000231 DATAAS010000000
VERSION     DATAAS010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2841)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2841)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2841
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3485996"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            757..2352
                     /locus_tag="VHF08_03685"
     CDS             757..2352
                     /locus_tag="VHF08_03685"
                     /inference="COORDINATES: protein motif:HMM:NF028468.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2067782.1"
                     /translation="MLSVNPNTWRTSDVHHFYFEMFAVILAAVLAFYYILRAYTLNDK
                     FSLFVGIGFLTNALIDLMHALVSFSLVNEPLFLKYFIPQTWFAGRIFLSAMFVVAIVM
                     YSTLSKDSKSLASSSAASSITTSSRQKETSSLKEEIRYDKLRNRLILSLIMLAIMAAS
                     IAISSLFSVYPGIVIDDFPLHRPYEIPSLALFLVALFYFYKNQLYKINDVFYKGVLAS
                     LLIDSFAQIIMSYSATSFDTAHNVAHILKNAGYFVNIIALALSSIQYNTMLRQSITSL
                     KESNIRLKEREEVIRVQYEKLKETDKMKDEFINIAAHELRTPIQPILGLTQFLLSKTK
                     NIKDHELLVVVVRNAKRLLRLTDEILDVTKIESHSLKLSKEQFNLNDVIKNAINDIAT
                     NKEESNNLKLLFQSEEDIFIEADRSRLIQVISNLLSNALKFTKEEGGTIAITTEKKDT
                     QVIVKVKDTGTGIDPEILPRLFSKFTSKSFEGTGLGLFIARNIVEAHGGKIWAENNAD
                     GKGATFSFSLQLSKEQQQQLKNI"
BASE COUNT         1003 a          425 c          425 g          988 t
ORIGIN      
        1 ccaaaataca aattatttta aaataatttg tattttggca aatctgtatt tcataaccta
       61 ctgctatatg gtgttagtat attctctcaa tagtattttg aatgtacttc tctatatctt
      121 tttttacctt ttttgggaat ctcaatttta aaacgaatat cctactttct tagttgaatt
      181 cgtcttctca ttttgtcctc gatctatttg cctagatctc ttttactcaa tattctgatc
      241 taagctcaat atcactttat tctagcgata gtaacaaaat atatatgcaa tatctgatgc
      301 tcgagtcagc aatattccca tgtctcttta ttaatcgtca cttaagcaat cttaactcta
      361 cgtggtcttg tcccaatagg tctaacgcta tcttttcaat tcttcactac tgtatgtcga
      421 aggttgataa tcatcaatct tgacagcaag gctcagaaag aatctttatc ttgtttgaat
      481 tattagaata gtattagcaa caatatcttc taaaactaat gcagtttctt tatcgaggaa
      541 agaattagaa tgtatgatat atacctacgt tattacaatt agaaaagtct tttataatat
      601 atgtatagat atttttaaat gaatcattaa tgattaaact ttcagtgata gtagattaag
      661 gaaacaatcg tcctgacaat acgtcgattt gttatttcta accaagttct ggtaaggtat
      721 acgctaatac cattaattcc actattaatt atagcgattc tatcagtcaa tcctaacact
      781 tggagaacat ctgatgttca tcacttttac tttgagatgt ttgcagtaat acttgccgca
      841 gtattagctt tctattatat attgcgtgct tatacgttaa atgataaatt cagtctattt
      901 gttgggatag gatttcttac taatgcttta attgatttga tgcatgcctt agtctctttc
      961 agtttagtga atgaaccact atttttgaaa tactttatac cacagacatg gtttgctgga
     1021 agaatatttc ttagtgctat gtttgttgtc gcaattgtaa tgtactcaac attatcaaaa
     1081 gattcaaaat cgcttgctag tagtagtgct gcatcatcta taacaacatc atcaagacaa
     1141 aaagaaacat cttcactaaa agaagaaatc cgatatgaca aattaagaaa tagactcata
     1201 ctttctttaa taatgcttgc gattatggca gcaagcattg ccataagttc tctgttctca
     1261 gtctatcctg gtatagtaat tgatgatttt cctttacata gaccatacga aattccttca
     1321 cttgctttat ttttagtagc tttattttat ttttataaaa atcaacttta taaaataaat
     1381 gatgtattct ataaaggagt cttagcttcg ttactaatcg attcttttgc ccaaattata
     1441 atgtcttact ctgctacatc gtttgatact gcacataatg tagctcatat tcttaaaaat
     1501 gcaggttatt ttgttaatat tattgcactt gcattatcaa gtattcaata taatacaatg
     1561 ttgagacaaa gtattacgag cttgaaagaa agtaatatca ggttaaaaga acgagaggaa
     1621 gtaatacgtg ttcaatatga aaagctaaaa gaaacagata aaatgaaaga tgaattcatt
     1681 aacatagcag cgcatgagct gcgaactcca attcaaccta tacttggatt aactcaattt
     1741 cttctgtcta aaacaaaaaa tattaaagat catgaattac ttgttgttgt tgtcagaaat
     1801 gcaaaaagac tactgagact tacagatgag atcctagatg tcacaaaaat agagagccat
     1861 tcgttaaaac tgagcaaaga acagttcaat ttgaatgatg taataaaaaa tgctataaac
     1921 gatatagcta caaataaaga ggaaagtaat aatctaaagc tattattcca atctgaggaa
     1981 gatatattta tagaagcaga tagaagtagg ctaattcaag ttatatctaa tctattaagt
     2041 aatgctttaa aatttactaa agaagaagga ggtacaatag ccattaccac agaaaagaaa
     2101 gatacccaag ttattgttaa agtaaaggat acaggtactg gtatagatcc tgaaatattg
     2161 ccaagattat tttcaaagtt tacttcaaag tcttttgaag gtactggctt gggattgttt
     2221 attgctagaa atattgtaga agctcatgga ggtaagatat gggctgagaa taatgctgat
     2281 ggaaagggag ctacatttag ttttagtctt caattaagta aagaacaaca gcagcaactc
     2341 aagaacatat aacagatgaa tcactaatat tagtaaaata gagttatcaa agaaccattg
     2401 acttcaaatg atgatctaaa ggctctaata acttatttag aaattttaat tagttgcaat
     2461 aaattactac atcattgttt agtaagagta ataataattt atctgctata tcgacaataa
     2521 tagctgtttt aatgttatca gttgctctta ctattatcat tatacatcaa taacaagaag
     2581 cattagcgca aacagacagc aatatttcca agagatatga aagacctaat tatggaattc
     2641 agattccagt atatttctaa ttggagagta gattaaggtg atgtataagc tgatgatcat
     2701 atcactgata ttgtttcatt cttgcattag taagaaatga ttaagaatcc tatgaactat
     2761 ctctttcact atcaataaat attccatcac agatctaaat gaaaatctga atgattatct
     2821 tgatggaatt actaatgatt a
//
LOCUS       DATAAS010000232         1563 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5108059, whole genome shotgun sequence.
ACCESSION   DATAAS010000232 DATAAS010000000
VERSION     DATAAS010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1563
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5108059"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..596
                     /locus_tag="VHF08_03690"
     CDS             <1..596
                     /locus_tag="VHF08_03690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067783.1"
                     /translation="MTNILYHATENAAKRNTRIIDEKAIDDTIKSTHPGLRIRGSIMG
                     VPLSDFIKIRSSSNDIQMLESDVRDAVKNLLNYAHDMGSVAQFEATNGRASGIDVIYN
                     DTSGTKVAVAVVINKDHTKNFDQISNTVKSVGFADKLLILTNANTNSGTDRTTVVNID
                     RCKMTDLIYFSSKYKNNEILNDDLNRALMLAKSIKLC"
     gene            668..934
                     /locus_tag="VHF08_03695"
     CDS             668..934
                     /locus_tag="VHF08_03695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067784.1"
                     /translation="MDKKGTNDEGHENVENPYYDVFRCNICGEDADFVVQLELVKERS
                     NYNIIESVNQMPFYLCETHEYLYKKMQNNIDLKNYFLETLRENQ"
     gene            995..1465
                     /locus_tag="VHF08_03700"
     CDS             995..1465
                     /locus_tag="VHF08_03700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067785.1"
                     /translation="MEKKRRFETLDDFLKNLHREGVTLIDFNGQKTPCILINPNRFEE
                     LMRSIYGKKLAVDTLLNVFHDGQDVFVDVKLNFLNIGIEENYLLYANDMLEFFESLTR
                     TGMIGIASNASYSQHTSNIFMIQLPKKEAAENALRIIKANAKNTRRYTDQSRYI"
BASE COUNT          603 a          233 c          279 g          448 t
ORIGIN      
        1 caatgactaa tatattatat cacgcaacag aaaatgctgc aaaaagaaac acaagaatta
       61 ttgacgaaaa agccatagat gatacaatca aaagcactca ccccgggcta agaattagag
      121 gaagtataat gggtgttcca ctttcagatt ttataaaaat tagaagcagc tctaatgata
      181 ttcaaatgct ggaatcagat gttcgtgatg cagtaaaaaa cctcttaaac tatgcccacg
      241 acatgggaag cgtagctcaa tttgaagcta caaatggaag agcctctgga attgatgtta
      301 tttataatga cacatctgga actaaggtag ccgtcgcagt agtgataaac aaagatcata
      361 ccaagaattt tgatcagata tcaaatacag taaaatctgt tggtttcgca gataaattac
      421 tgatattaac taatgccaac actaatagcg gaactgatcg aacgacagtg gttaatattg
      481 accgatgcaa aatgactgat ttgatttact ttagcagtaa atacaaaaat aatgaaatac
      541 taaatgatga tttaaatcgt gctttaatgc tagcaaaatc cataaaactt tgttaataat
      601 ataattatag tatcgcatta attttagact ccaaacttat ttaagagaga attacgatcg
      661 ttgcgctgtg gacaagaaag gaacaaacga tgaaggtcac gaaaatgttg aaaatcccta
      721 ttatgatgta tttcgatgca acatatgtgg cgaagatgca gactttgtag tccagctaga
      781 acttgtaaaa gagaggagca actacaatat tatagaatca gtaaaccaaa tgccatttta
      841 cttgtgcgag actcatgaat atctttataa gaaaatgcag aataatatag atctaaaaaa
      901 ttactttctt gaaacactca gagagaatca ataataactc tgtgggatta ttgcaatatt
      961 gttttattat tcattagtta tttaattaat taatatggaa aaaaaaagaa gatttgagac
     1021 cctggatgat ttcttaaaga atttgcatag agaaggagtt actctaatag attttaacgg
     1081 ccagaagacc ccttgtatcc ttataaatcc aaataggttc gaagaactta tgcgctccat
     1141 ttatggaaaa aaattagcag tggatacatt actaaatgta ttccatgatg gtcaggacgt
     1201 ttttgtagat gttaaactga attttctcaa tataggtatt gaggagaatt atcttctata
     1261 tgcaaatgat atgttagaat tctttgaatc tctaacgaga acaggaatga ttggcatcgc
     1321 ttcaaacgct tcatattctc agcatacttc aaatatcttt atgattcagc ttcctaaaaa
     1381 ggaggcagca gaaaatgcac ttagaataat taaagctaat gcgaaaaaca caagaagata
     1441 tacagatcaa agccgctata tctaataaat aaagcggcgt aatctttatg ttatctatga
     1501 cggataatag aaatggcagc agaaagagca aaaataagaa ggtagagcat tgtagcatta
     1561 cga
//
LOCUS       DATAAS010000233         2229 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5109787, whole genome shotgun sequence.
ACCESSION   DATAAS010000233 DATAAS010000000
VERSION     DATAAS010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2229
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5109787"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            557..886
                     /locus_tag="VHF08_03705"
     CDS             557..886
                     /locus_tag="VHF08_03705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067786.1"
                     /translation="MSSRTNYESSNLNVKTLTRNNDITLSPIFILCETCHWCATYFDK
                     NKLLPEGDDSNNKCPECSNVGTLSNFPILSNESFTFNYTHNRGVELEFRIRKNIKKEI
                     RDKEQGS"
     gene            891..1028
                     /locus_tag="VHF08_03710"
     CDS             891..1028
                     /locus_tag="VHF08_03710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067787.1"
                     /translation="MSEENNKELPQPEEEEESKTNNGKSRKKLKELVLPNDSNVAKGN
                     V"
     gene            complement(1483..2031)
                     /locus_tag="VHF08_03715"
     CDS             complement(1483..2031)
                     /locus_tag="VHF08_03715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067788.1"
                     /translation="MSTHNREAIAEQIVLSEINTLRSDPSIVKENGCAACHILFTLAN
                     RMQISEQDASDLLSEVLFNNSEINELFIEIVENIHMKQRMMGVSFSIKRREAKDKYID
                     SNFKNTLAELSADIANYGADIVLRKLLMSSISLEIAKNIGIDHHAAIEELYYYMRKND
                     QQTHESILEFTNRFYEKIRRRK"
BASE COUNT          843 a          335 c          298 g          753 t
ORIGIN      
        1 taaagaaatt acaagtacag atagatgata tactaaaaaa atccggcagt tccaaaaaaa
       61 gaaaaacaag aaaagtaaaa agtaaaaagg catcatcatc tactgcgaaa aaaataggta
      121 aaagaaataa aaaacaaaga agataatcaa tatttataga tattataatt tttatcaaca
      181 actaaaaata caatctaaca ataccttttc tttatggggc ttttcttgtc agtatgagat
      241 aaattgatat tcttattatt attctcttct aacggttaat gtattttcag aataaataaa
      301 aataagatta taagcaaatc ttcaataaca aatgcatatt tctaacttat tctgctagct
      361 tgaaaacatt tctcatattt cgagtgcaaa attagattta tatttattta ttttatagtc
      421 ttaaactgtc ctcttacggc atactccgta gtaaatttca tcaataaatc cctgctagtt
      481 tactttagaa catgatgttt tgtatcctag tagaaaaaag atgatcttat atattgttaa
      541 atgccctttc tattaaatgt cttcgagaac caattacgaa tcctctaatt tgaacgtcaa
      601 aactttgaca agaaataatg atattacttt atctcctata ttcattctct gtgaaacatg
      661 tcactggtgt gctacatact ttgataaaaa taaactattg cctgaaggtg atgattctaa
      721 taacaaatgt ccggaatgtt ctaatgttgg tactttatca aatttcccta tattatcaaa
      781 tgaatcattt acctttaatt atacccataa cagaggagtt gaattagaat ttagaataag
      841 aaagaacata aaaaaagaaa taagagacaa agaacaagga tcctaaagca atgtcagaag
      901 aaaataacaa agaattacca caaccagaag aagaagaaga atcaaaaacc aataacggaa
      961 agagtagaaa aaaattaaag gaattggttc taccaaatga ttcaaatgta gccaagggaa
     1021 atgtatagca ggaaacgtat cccgaaagta ttgcagcttt tttaaaatag aataaataaa
     1081 gtttagtttt tttagtttat gttattgcag attttgatgc cagataaata aaatagtagc
     1141 aaagtataat acagcttttc catataataa tatttgtcta acagcattag ccagccataa
     1201 agttaaggca agtaaacttg acattgacga tatggttcct tcattttatt aaagaagtaa
     1261 tttctaacct gtcaatagat gatgggcaag gatgatgatg atgacgattt gactattata
     1321 tatcaaaagc tctccttatg ttaaatttta ctgaatgcaa taatgattat gataactatg
     1381 ggactataat tttagcaagt gctattactc tttgatgatg aacttcacaa atagaaaaag
     1441 aagatcataa gcaaaaataa tgaacttctg atctaaatct gactattttc tccttctaat
     1501 tttttcataa aatctattag taaattctag gatactttca tgcgtttgct gatcattttt
     1561 tctcatataa taataaagct cttctatggc agcatggtga tctataccaa tattttttgc
     1621 aatttctaat gaaatagacg acataagcaa tttacgaaga acaatatcag ctccataatt
     1681 tgcaatatca gcagataatt ctgctaatgt attcttgaaa tttgaatcaa tgtatttatc
     1741 tttagcttca cgtctcttaa ttgaaaatga tactcccatc atccgctgtt tcatatgaat
     1801 attttctact atttcgataa agagttcgtt tatctcagaa ttattaaata ggacttcaga
     1861 tagcaagtca gaagcatctt gttcacttat ctgcatcctg ttagctaatg tgaataatat
     1921 atgacatgca gcacatccat tttctttgac tatcgaagga tctgaacgca aagtgtttat
     1981 ctcacttaaa actatttgtt ctgcaatcgc ctctctatta tgcgtagaca tgtttgttat
     2041 ttaataaata tgccaagcaa tctaaaaatc aatccactgt cttttttata ataatttctc
     2101 atcaacaatt ctaatagcac cattactcct atctatggag aactatttgg tttgctttaa
     2161 aaaaattaac cataaaggca tacataaagg ctccaaatgt ttattaatta ttcgtacaat
     2221 ttttttcat
//
LOCUS       DATAAS010000234         2307 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4571033, whole genome shotgun sequence.
ACCESSION   DATAAS010000234 DATAAS010000000
VERSION     DATAAS010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2307)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2307)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2307
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4571033"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            614..1030
                     /locus_tag="VHF08_03720"
     CDS             614..1030
                     /locus_tag="VHF08_03720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067789.1"
                     /translation="MALGDLLFEEKGKQISSRTVDSIEPTAEISGIGNMKYKDENIST
                     HWTISVKLGQNGVSYAQGRGIMYAENNEVTTYSINGIGKLNSSGGGSSSRGVSIFRTN
                     ALSNGGKLSALNDIVTVYELEQDNDGNYTAKLWEWK"
     gene            1167..1355
                     /locus_tag="VHF08_03725"
     CDS             1167..1355
                     /locus_tag="VHF08_03725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067790.1"
                     /translation="MIDENILFTKRQLKIIGNMCETMKHWRRHDPAIKFPDTFYEELE
                     DIQDKCTKAILKNRNEQL"
BASE COUNT          904 a          328 c          380 g          695 t
ORIGIN      
        1 ggagaaaatc ttagagagag ggagaaggaa ttagcgcagc aactgaacca aaggaagaga
       61 gatagtttct gaaataagaa ctctaaacca aacaatccaa gcacacaaat aacaaaatta
      121 ttatgctgaa ggtgaggctc tcgtgtgaca agtgcctaca tgataacttt gaatttatag
      181 aagattcgtt ggcaggaaaa gataatgcat taatggaaag tacagaagtg atctaagaga
      241 acagtaatac agctaataca aactagagta tagatagaag agttacaaca gcatatagat
      301 aagataaata gcaatttaga taaagttgag gacaattggc aactagctga tctctgatct
      361 acaaacactt ttgctattaa attatttata ttttccaata tttttactcg tatacataag
      421 tctctaatgt caatctttaa ttttcaaagt ttccattaac aaaaaaattg aagcttaaac
      481 attattgtaa acacactgct ttataccatc gttattattg ttatctagtt agagaatcat
      541 aaaagagatt cagatttgag aatcaacctc caatttaaat ttcatcacta atgaaacgaa
      601 tgatagaata attatggctt tgggagatct gctctttgaa gaaaaaggta aacaaataag
      661 ctcacgaaca gtagattcga tagaaccaac tgcagaaata tcaggaatag gcaatatgaa
      721 gtataaagat gaaaatatca gtactcattg gacgatatcg gttaagcttg gtcaaaatgg
      781 agtaagctat gcacaaggta gaggaattat gtatgcagaa aacaatgaag taactactta
      841 ctctataaat ggaataggca agctaaacag ttcaggtggt ggttctagta gtcgtggagt
      901 atcaatattt cgtactaatg cattatctaa tggtggaaaa ctatctgcac tgaatgatat
      961 agttacagtt tatgaattag aacaagataa tgacggaaac tatactgcaa aactctggga
     1021 atggaaatag taataatatt tccatttata tgcaagacat aatttcagat acaagacaat
     1081 gaatcgtaga accgttggta atatatggaa aaatactata caaatatgtt caatgatcca
     1141 tcaataaaat caataacaat aaaccaatga ttgacgaaaa tatattattt acaaaaaggc
     1201 aattaaagat aataggcaat atgtgtgaaa caatgaagca ttggagaaga cacgatccag
     1261 ctataaaatt ccctgacacg ttttatgaag aactagaaga tattcaagat aaatgtacaa
     1321 aagcaatatt aaaaaatagg aatgaacaat tatagcattt attcaatatt tccaaggata
     1381 ggtctattct caaaattgcc aatcactaaa ataggttttc atagaaaata ttttaattaa
     1441 taataataga gaatttgatt aattaagtac aataaaaaga ctatacaata aggttaaaca
     1501 gcaggtattg ctcaaactat catacataag ataattatcg aaagcttgta ttcttgaaaa
     1561 aaggcttttc attttctaca gttatttcca aaaggtaaga aagtaaactg tgtttaaaac
     1621 gtcataacat aaaataaaat cagtttcttg tataaccacc atgcgggata ggacaatggt
     1681 aatgagaaag tggttcatat ggtgacttaa ggacgccgta cactgtaaag tcattgtact
     1741 tctttcttcc tgacctctga tgatgcatat tacataccat cttgtaaaaa ataggagaga
     1801 ttttaaattt catgctttag attagatttt aggatgagtt aagcgctgcc aacattctaa
     1861 gcaataatca ccattaactt gataaatctc tgctttatta ttattacagt tatgcaaata
     1921 tcgtcatatg ttttggtcaa tttcacgttg taaatactat aattacaatt ttctaattat
     1981 gtctttattt ctctaccttt agaatcattt ttgagaattg gcaatcagaa taattattag
     2041 actaacctag ttaatttttg tgtgactaag aatatcacct aaaaaactat ctatccttct
     2101 tcgacttaca atcattgtac ctggcaggat tcgtaaagcc gaataggatc tccagtgatt
     2161 aaatgtaata agactgttta aatattaggg attcctaatt aggcgcaact aatgactact
     2221 aaatatgatc tttctattat agaagaagaa ggcgaacctg aaatacccat atacatatgc
     2281 gaaaataccg atggagtatt agatcct
//
LOCUS       DATAAS010000235         4164 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1416657, whole genome shotgun sequence.
ACCESSION   DATAAS010000235 DATAAS010000000
VERSION     DATAAS010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4164
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1416657"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(310..636)
                     /locus_tag="VHF08_03730"
     CDS             complement(310..636)
                     /locus_tag="VHF08_03730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067791.1"
                     /translation="MTHNGIDIDQFILLTIYPCVVFFGLGFIAKRTSMNESLKYALQA
                     LTCIIFSIVYFIVIPNGGAQGLAIVLAMFGAILLIMARKHKIYPIEEKEEKGHEGQST
                     TSTSGT"
     gene            1055..1312
                     /locus_tag="VHF08_03735"
     CDS             1055..1312
                     /locus_tag="VHF08_03735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067792.1"
                     /translation="MKKVELLRILIKERALVRLLKKMGDKEYQTRELLQKVGSYGYGH
                     KLLLKAEKNKLVERKIVKNRMYNKLTKEGKQVVRLAKEIGV"
     gene            complement(1385..2752)
                     /locus_tag="VHF08_03740"
     CDS             complement(1385..2752)
                     /locus_tag="VHF08_03740"
                     /inference="COORDINATES: protein motif:HMM:TIGR00379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042242 - cobyrinic acid a,c-diamide
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobyrinate a,c-diamide synthase"
                     /protein_id="HEX2067793.1"
                     /translation="MNTPKIVVAGATSGVGKTAITTAIMYALTKNGFHVQPFKIGPDF
                     IDPSYHNLVTGRPSRNLDVWMMGKNGVLKCFNNSSQGADVAIIEGVMGLFDGLSGKDD
                     YASTAQIAKMLDAPVILVIDAGKAARSIAAIALGFLHFDKKLKIAGFILNNVAGDKHA
                     KFVQDAFACKVNVPIIGIVRRDKKITIEERHLGLIPALELEKKKKSIHQSAKYILEQI
                     DIDKIKSLCKPINRTKAIQKEFPDTHIRVAVALDESFNFYYADNFDALRKQQAELIFF
                     SPVNDVKLPENIQGIILGGGFPEILADKLEFNQAMIKSISKAASNGMPTYGECGGLMY
                     LTRSIRTNNEGKKKRQKMVGLIEADTFMSGKLTLNYTEADCTSSFFEDIYKIRGHEFH
                     YSNIENISTDSKFAYNMRRGNGVDNKRDGFVVYNCLASYMHLHFANNRLPERFIKSCL
                     EFSHK"
     gene            complement(2991..3146)
                     /locus_tag="VHF08_03745"
     CDS             complement(2991..3146)
                     /locus_tag="VHF08_03745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067794.1"
                     /translation="MTERFLNSLVKDYGKYSLSTDRGTWYIHTLVNSWEDRTSYIHLT
                     YKKKASL"
BASE COUNT         1329 a          725 c          613 g         1497 t
ORIGIN      
        1 tttacattca agggctatga tattttatga ctctacctat atgtttctta tccacttcaa
       61 attgacaata aagatgtaat gagataaaac ctcaataggt aattatctgt tctcttgtta
      121 agagtagcta cagatacata gattcactat ttgtagttcc aagcccttat aataattaag
      181 atagtcatgg gtttagattt acattggcat tatcctttac gtttttcctt tcttttacat
      241 tataatattc ataatcttta atgatagcag agaaagatgt ttttcaatac aaaaattctc
      301 ttctatatac taggttccac tagttgaagt tgtggattga ccttcatgtc ctttttcctc
      361 cttttcttct attggataga tcttgtgttt tctggccata attaatagaa ttgcgccaaa
      421 cattgctagt actattgcaa gtccctgagc tccaccattt ggtattacta taaaataaac
      481 tatcgaaaaa ataatacagg ttaatgcctg caaagcatac ttgagagatt cattcatgga
      541 agttcttttt gcaataaacc caagcccaaa gaatacaaca catggataga tagtgagcag
      601 aataaactga tcaatatcta ttccgttatg agtcatgatg atctagatga tttcatgaag
      661 gatatttatc tttctctaat gctattacaa aacctccgtc tgtttgagaa tattcattac
      721 aatgactcca atcgtaatta acaaaccagc aggagattga atggaattag aaaaatcaaa
      781 cttgtccaaa acactgtaat atcgtatcag taagagaagc tttgattaat ataagtgact
      841 ttttcctatt ttttcttctt tgaacatcgt aaaggaggag gtcaatccta tgcaaatacc
      901 tgtcatcgcg gtaccaaagg caaaccagta ttgccagaga tgaagtacaa gtccatcatc
      961 cgatgctaca ctctatcctt atgcataata atcaatattg ttactattaa aaattataat
     1021 atatttatat tttttactag ttatcagtaa cacagtgaaa aaagtcgaat tattaagaat
     1081 tttaattaaa gaaagggctt tggttaggtt gcttaagaag atgggagata aagaatatca
     1141 aactagagaa ttgttacaga aagtaggatc ttatggttat ggtcataaac ttttactcaa
     1201 agcagagaaa aacaagttag ttgaaagaaa gatcgtcaaa aataggatgt ataacaagct
     1261 tacaaaagaa ggaaagcagg tagtcagatt agcaaaggaa atcggagtat agatgccgcg
     1321 cgggatgggg agagtagaca acccattctt tcatctacaa tagagattgt atatataata
     1381 tattttattt atgagagaat tctaaacagc tcttgataaa tctttctggt aatcggttat
     1441 ttgcaaaatg aagatgcata taggatgcaa gacagttgta tactacaaaa ccatctcttt
     1501 tgttatctac tccattgccc cttctcatat tataagcaaa tttcgaatca gtagaaatat
     1561 tttcaatgtt agagtaatgg aactcatgac ctctgatttt atatatatct tcaaaaaatg
     1621 aggatgtaca gtcagcctcg gtataattta aggtcaattt accactcata aatgtgtccg
     1681 cctctatcaa tccaaccatc ttttgtcttt tcttttttcc ttcattgttt gttctaattg
     1741 atcgagtaag atacattaaa cctccacatt cgccataagt tggcattcca ttactagctg
     1801 cttttgatat tgattttatc attgcttgat taaattcaag tttatcagct aaaatttctg
     1861 gaaatccgcc gcctagaata attccttgaa tattctctgg cagttttaca tcatttactg
     1921 gactgaagaa tataagttct gcttgctgct ttctaagagc atcaaagtta tccgcatagt
     1981 aaaaattaaa tgattcgtcc aaggctactg cgactctaat atgggtatca ggaaattcct
     2041 tctgtattgc cttggttcta tttatgggtt tacatagtga ttttatctta tctatatcaa
     2101 tctgttctaa tatatatttt gcagattgat gaattgattt ttttttcttt tctagttcaa
     2161 gtgctggaat aagacctagg tgacgttctt ctatcgttat ttttttatct cgccttacta
     2221 ttcctattat tggaacattg actttacatg caaaggcgtc ttgaacaaat tttgcatgtt
     2281 tatcacctgc aacattattt agaataaatc ctgctatttt caatttttta tcaaaatgta
     2341 aaaagccaag tgcaatggct gctatagatc gtgctgcttt tcctgcatca attacaagaa
     2401 tcacaggtgc gtcaagcatt tttgctatct gtgctgtgct tgcataatcg tcttttcctg
     2461 aaagcccatc gaacaaaccc atgacaccct cgataattgc aacgtctgct ccttgggatg
     2521 aattattaaa acatttcaag actccgttct tgcccatcat ccatacatct agattgcgtg
     2581 aaggtcttcc agttacaaga ttatgataac taggatcaat aaaatctgga ccaattttaa
     2641 atggctgaac atgaaatcca tttttagtga gtgcatacat aatagctgtt gttatagcag
     2701 tcttacctac tccactagtt gcaccagcta caacaatttt tggagtattc aaatagatcg
     2761 atatttgctt tcttgctatt ttattttaac ttattgtaat ttatgttgac tctattcatg
     2821 taactcatgt agtctttatt actttcttat tgtgtgttta tttataaaca gttttaacca
     2881 attctttatg ggatttaatt gcaattatct tttctaaagg aaagtaataa taataatcat
     2941 catcaaaagc acctccgttc tatccttatg atgtattatg gattgttctt tcataatgat
     3001 gcttttttct tatatgttaa atgaatatat gatgttctat cttcccaaga gtttacaagc
     3061 gtatgaatat accatgttcc tctatctgtt gaaagtgaat actttccata atcttttacc
     3121 aatgaattca ggaatctttc tgtcacaaga attggtcttt taaaaggaaa aatgcgcgta
     3181 ttccaagaat cagtttaatg agtgaattga tagcaatccc aataaccaag caaattgatt
     3241 gccaacttta atcagagttt tattatttac tatattctta tattttcaac attatcaaga
     3301 tgtaataaaa ataatattaa tacactttca tctacctttt atttgaatct attaaaaaat
     3361 taaataacta atctatgcat ccagcttcac atagttcttt gacaaatatt attacgcata
     3421 ctaatgaaaa acatgaaagt aactaaaaaa gatcaagtat tataacagat ataaatcctt
     3481 caactttctt ggatggtgcc attcgggact gtgttgtaca tctttttatg caatcaatct
     3541 tatttgatct actgacggtg aaatatcttc agctaaatca caaaagaaca gaaaattaaa
     3601 aagaaaaatc ccaaccacca tcaatccctc gaaatttccc tccacattct cagatgaacc
     3661 attgtcgtcg gctagagatt gtgattcacc tgtttccgta ttatcagtct caccaattat
     3721 attagtttcc tgctggattt atcgtcattc ctagaaacga catcagtgat gttaagaaca
     3781 tcatattatg attccagaga atagcatcat tggaatccat gtacttgact actctttgtc
     3841 gctattgcta tacaaatgtt gtatttcttc tgccactacc actaccactt ttgttctatt
     3901 ctgtttcttt gcattaacaa tcttatctct gttttcacga tatgacttct actttctttt
     3961 tgtctaaaat tcctttcttt tcacttttga atatcaatgt tgaatagata aatcgtttac
     4021 aatagtcaac ttcctgcgca atttagtaat tctagaatat tgtcaatatt gtaacgcttc
     4081 ttgctattgt gtccaatatc atgagagatt ggcaatttca tcgctttgaa atctgtcgat
     4141 agttaatttg aacttacaaa ttac
//
LOCUS       DATAAS010000236         1711 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1418595, whole genome shotgun sequence.
ACCESSION   DATAAS010000236 DATAAS010000000
VERSION     DATAAS010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1711
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1418595"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(229..969)
                     /locus_tag="VHF08_03750"
     CDS             complement(229..969)
                     /locus_tag="VHF08_03750"
                     /inference="COORDINATES: protein motif:HMM:NF015084.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin/lipoate A/B protein ligase family
                     protein"
                     /protein_id="HEX2067795.1"
                     /translation="MSFKFSKIRTLETGYNSGPWNMALDEVLMNCINYHNMPILRIYG
                     WQPPTVSIGYFQSMDEEVDIKRCRQMGIDVVRRMTGGGAVLHESELTYSFITNVYPKN
                     IMESYNLICDAIVMCINKLGFNAKFAPLNDIIVNGKKVSGNAQTRKKDILLQHGTILL
                     NVNVEKMFSVLKVPSEKVKDKMIEDVKGRVMGLNKTFEQVAYNLKESFSEKFGAEIIV
                     DDLTINEEQSTKKLAKEKYTSDQWNLKK"
     gene            complement(1005..1292)
                     /locus_tag="VHF08_03755"
     CDS             complement(1005..1292)
                     /locus_tag="VHF08_03755"
                     /inference="COORDINATES: protein motif:HMM:NF021921.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate protein ligase C-terminal
                     domain-containing protein"
                     /protein_id="HEX2067796.1"
                     /translation="MKKEHNIHKSKKLIKVSLEYDEDSKIINSITITGDFFLYPEESL
                     DKLEASLIGTKLEKDVIKQKIEKCLNGSEAFGFDSESMTDAILGCFKEEQD"
     gene            complement(1312..>1711)
                     /locus_tag="VHF08_03760"
     CDS             complement(1312..>1711)
                     /locus_tag="VHF08_03760"
                     /inference="COORDINATES: protein motif:HMM:NF044806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067797.1"
                     /translation="YELPYNRRCAHEFVLSSRKFGEKSALNIAKRLLDYGFHPPTIYF
                     PLIVREALMIEPTETESKETLDRFAAALRSIANEIKENPDIVKGAPYTKLVGRLDEVA
                     AARKPNLRWTAPSQADEKKDSEKDCVLKNL"
BASE COUNT          483 a          368 c          215 g          645 t
ORIGIN      
        1 attatatctc ctaacgagtg aagatactta gtaggaatac atcctctttg agtacaagtt
       61 ccgcctagtc cattcttttc aattaggcag acattcccac caagttgtgc tgctctaatg
      121 gcacaagcgt aaccaccagg acctcctcct atgactacta tatcatacat atatatccat
      181 ctacgtaact tctaaatgct tgacaaataa gtcttttaat aagtcaattt actttttcag
      241 attccattga tctgaagtat atttctcctt agccaacttt ttagtacttt gttcttcatt
      301 aatagttaga tcgtcaacaa taatctcagc accaaatttt tcactaaatg attcttttag
      361 attgtacgct acctgttcga atgtcttatt caatcccatt actcttcctt taacatcttc
      421 gatcatctta tccttgactt tttctgatgg aacctttaac acagagaaca tcttctcaac
      481 attaacattt aataatattg ttccatgttg cagtagtatg tctttcttcc tagtctgagc
      541 attcccagat acttttttgc cattgacaat tatatcattt aatggagcaa attttgcatt
      601 aaaaccaagc ttatttatgc acatcactat tgcgtcacat atcaaattat aagattccat
      661 tatatttttt ggataaacat ttgtaatgaa tgaataagtc aattcagatt catgcaatac
      721 cgctccacct cctgtcattc ttctgactac atcgataccc atctgcctgc atctttttat
      781 atctacttct tcgtccatgc tctgaaagta tcctattgat acagttggtg gttgccagcc
      841 ataaattctt aaaattggca tattatgata atttatacaa ttcattaata cctcatcaag
      901 agccatattc catggtcctg aattatatcc tgtttctaaa gttctgattt tgctaaactt
      961 aaaactcata gtttccctgt ctcttttctc ccttcattct tttcctaatc ttgttcttcc
     1021 ttgaagcaac caagaattgc atctgtcata gattctgaat caaaaccaaa ggcttcagag
     1081 ccattcaaac atttctcgat cttttgctta ataacatctt tttctaattt tgtaccaatc
     1141 agactggcct caagtttgtc caaactttct tccgggtaaa gaaaaaaatc tccggttatt
     1201 gttattgagt taattatttt actatcttca tcatattcaa gcgaaacctt gatcaatttt
     1261 tttgatttgt gtatgttatg ttcctttttc attactcatt attactactc ctcacagatt
     1321 tttcaacaca caatctttct cactgtcttt tttttcatca gcttgtgaag gagcagtcca
     1381 tcttaaatta ggttttcgtg ctgctgcaac ttcgtctaat ctcccaacta attttgtata
     1441 tggagctcct ttgacaatat ctgggttttc ttttatctca tttgctatgc ttcttaatgc
     1501 tgctgcaaat ctatccaatg tttctttact ttctgtttcc gtaggctcaa tcattaatgc
     1561 ttcacgaaca attagaggaa agtaaatagt tggtggatga aaaccataat ccaaaagtct
     1621 cttcgcaata ttcaaagcgc tcttttcacc aaatttccta gaagataaga caaactcatg
     1681 ggcacatcta cgattgtatg gaagttcata a
//
LOCUS       DATAAS010000237         7456 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4037151, whole genome shotgun sequence.
ACCESSION   DATAAS010000237 DATAAS010000000
VERSION     DATAAS010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7456)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7456)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7456
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4037151"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(410..727)
                     /locus_tag="VHF08_03765"
     CDS             complement(410..727)
                     /locus_tag="VHF08_03765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067798.1"
                     /translation="MVSKIKSKKRKNGKQTKATKKSKANPKKKRNIKKTSPTTARQKK
                     VSRGTKTRTRTRTRPTTRPTTTTTTTAATNPNTEENDLLAIQNNSSLVEDTAKTHEAQ
                     EEL"
     gene            complement(993..1379)
                     /locus_tag="VHF08_03770"
     CDS             complement(993..1379)
                     /locus_tag="VHF08_03770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067799.1"
                     /translation="MEERDFLHEICLTVLCVSKDVKFAGVVDSNGKLLMGEYRKNIQG
                     PLVKSDSINTQKSNSFFLSYLAPAIKGRNFDLEQGKVHFKLTEFDNVKLATTSLTNRN
                     DRYLCVYLESLSTSYQEIISKVIESI"
     gene            3011..3358
                     /locus_tag="VHF08_03775"
     CDS             3011..3358
                     /locus_tag="VHF08_03775"
                     /inference="COORDINATES: protein motif:HMM:NF012753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEX2067800.1"
                     /translation="MKRVEAIIGSEKVLDVNEALKKVGVSGCTILDAKGRGKGEKPMI
                     ESGRGTGRFASEFSVRSNIVTIVDDSEVDKVINTILDTVSTGSAGDGKIFISPISEAI
                     DIGTKKRGEVAVL"
     gene            complement(3395..4867)
                     /locus_tag="VHF08_03780"
     CDS             complement(3395..4867)
                     /locus_tag="VHF08_03780"
                     /inference="COORDINATES: protein motif:HMM:NF014044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
                     /protein_id="HEX2067801.1"
                     /translation="MKILSKSGNELIMIAMQTDTANKGDYLLIEDENSKRKMIVQIYD
                     EEYLSSQSLIEDIVKDEVVTASSMENLHDPLNIGSLSKMIRDARLFHTKIRATIDSSN
                     KLSSDVTWLPSRVYSKIRRLKISELCSFLGRTGIFPISIGDAGTENEEFEIYAEDLDG
                     RLNIITGKKESGKSHLSKMLVKTLVQHGAFVIVFDLNNEYGGLAWNHDGTPSSIKDQI
                     MILEPGNGLKFSLDYCGKTAMSSMLRNALDTPAASLREFFRIWDSLENKQTTLRIEAL
                     GNAINTWNINELIRDALISRYHVIHGSRLFSNNSDGDDLRFESVIERNRKGVAMIVNM
                     GKAAPVVRRMIVELILTKLVELLEKIAIPPIFLFAEEAHLYVRDTYWEDIVTRMRHFG
                     IYTTFITNQPDAIGDGIYRQVDNIFLFNFTNDADLEKISKVSLADNDTVRSIVRTLPQ
                     RHCLSIGKVVCDLPIVVKIAAAQVLMLGETKKFFTNYDKR"
     gene            complement(4864..5895)
                     /locus_tag="VHF08_03785"
     CDS             complement(4864..5895)
                     /locus_tag="VHF08_03785"
                     /inference="COORDINATES: protein motif:HMM:NF020933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA double-strand break repair nuclease NurA"
                     /protein_id="HEX2067802.1"
                     /translation="MTTQLNIPTDINFTEFGYMFYPTLRHCLPSELHKALKGKKIIFS
                     VDEKNLVPIEGWGKRPNPYCAETITTIQPIKGNTIVAALDSSSIQIAETEDGILYAVK
                     SGIAISVSEHALMHFKIGPILFYLSEETIKQSELDHRLTKLVLFDSDSAKRLIRIRVE
                     RAIQMELSSHLTKSIILIDGSLKSSLFENKSQGITKVAENCLLNKNSIVGISKNTKIK
                     ILDSISSPLTKVRGPAYMDIEMIIKSLIRNTIGNNLLVKFGNNNSHVLRADVVTNNGN
                     IEETLGRLLGNDSIAGGYPETLRLAHHISTFTSTEISCLRSHVLNNYDVIELAAEDIR
                     RTLLGSIPI"
     gene            5897..6523
                     /locus_tag="VHF08_03790"
     CDS             5897..6523
                     /locus_tag="VHF08_03790"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067803.1"
                     /translation="MFNNKITSILINVAQHGQYEQQQVYVIKMSPIYDCMSKQPQSSS
                     EEVKIRLKHRDWEVEITCLENKVKQVVENVLSGIDNSYANIDPTLNNQLTEIRKEIDS
                     LKLQINSTSINQIQAINATELQRKAIPKGGTTCRGLLEILLYEGYFGTEKHLGEVHEE
                     LSRRGYNYDRTAVSHSLTDMVRESILTRLGTMRNYQYIQKRPPSEPPF"
     gene            complement(6524..7117)
                     /locus_tag="VHF08_03795"
     CDS             complement(6524..7117)
                     /locus_tag="VHF08_03795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067804.1"
                     /translation="MVKMAENNTNNNHDSHVNVTVNIGDIKVQFNGSAESVLNSVITF
                     LTKQVPAIDLAKKISLNYAVTDLIDTYSNLIKITPEGPRVIPDTVEYSMKKLSDKEMV
                     GLQLVASKIAKDLGKLSDDGMQISEIQSATSLNPKSVSSRLSELVKAGHVVRENTRDG
                     SESVIYRITTSGIHWLASTIARKTKSSLSSSSSSSSS"
BASE COUNT         2439 a         1283 c         1200 g         2534 t
ORIGIN      
        1 aaaaaagaga gcgtgtgctt atcgctatgt taacatcaat aataataata atgatcgaac
       61 aacaacttca acagccagca tttattttac tgaatcttag atgatggtaa atgaagaaag
      121 agtctgcagt tccaataagc agataaaccc ttgttgggtt ctaaattttg atcttcaata
      181 tctctaggaa gaaattatta ataagaaggt tatctattgg tttagagcaa tatcattatg
      241 cagtataagc gaactgttaa ggatatgcat aactacctat tttatagtta accaactcca
      301 tattttctgt ttaccaactt tgaactattg ttttcatatc tttattcatt caaaaaattt
      361 tattactctg ttccctcatc atgaattaat caataagaga aatctctggt tataattctt
      421 cttgagcttc atgggtcttt gcagtatcct ctactaatga tgaattgttc tggatagcca
      481 aaagatcatt ctcttctgta tttgggttag tggcggcggt ggtggtggtt gtggttgttg
      541 gtcttgttgt tggtcttgtt cttgttcttg ttcttgtctt tgttcccctg gaaactttct
      601 tttgacgtgc tgttgttggg cttgtcttct ttatatttct cttctttttt ggattagcct
      661 tagatttctt agtggcctta gtctgttttc cattttttct tttcttcgat ttgattttac
      721 ttaccatata tattagcaat agttaactac ttattcttat attaatcgga aaaatataga
      781 atatttattt aatcagtaaa tgttaatgtg aacacattaa ctaatttaca tgttactaaa
      841 gatacaaact gttaaaaata aaattatcag gaattaatgt taaagatgga agaaaactta
      901 atgtagaatt aggttctaat taaatatctg ttgtattgcc ataataacaa aacccaaaag
      961 gaagattctg aatctagttg ttatttatcc tatcaaatac tttctattac tttcgatatt
     1021 atttcctgat atgatgttga caatgattca agataaacac aaagatatct atcatttctg
     1081 tttgttaatg atgtagtagc tagctttaca ttatcaaact ctgttaattt aaaatgaacc
     1141 ttgccttgct ctaaatcaaa atttcttcct tttattgcag gagccaaata ggataaaaag
     1201 aaagaattac ttttttgtgt atttatagaa tctgacttaa ccaaaggacc ttgtatattt
     1261 tttctatatt ctcccataag taattttcca ttactatcta ctacgcctgc aaatttcaca
     1321 tctttactta cacataatac agtcaaacat atttcatgga ggaaatcgcg ttcttccatt
     1381 gattaagtca attttgattt aataatacca aataataact attcgatcta ataagattgt
     1441 aagcaataaa ttttaaaagg tgttatttaa aaaagacgat cgaaactaga aaagttacat
     1501 caatcatatc tagatagcag aagtagtgta atgagttata atgctagaaa gatgatggta
     1561 gtaataataa caatttctaa ctacttatct attatatatt tcctctgctt cactctgtct
     1621 aatgacgtaa tctaataaca taatattgca attttagtta ctatgagcga ctttgtttgt
     1681 tccatttgat atgctaatat tattaagagc aataaataaa actcctccta taacagtata
     1741 gatataggac ttatattaga aatttacaat aggttataat ctattattgc ttatttttgt
     1801 ctattctaag cctttcctta tcttttttat tagtaggtgt tgtcctcaat tgcattccac
     1861 agcatgggca aaatatacca ttatgatata ggtaaatctc gcatctccta caatattttt
     1921 tgcctataca ataattactt tcacctacat ggatttttga atagattctt tcacagatat
     1981 tacgacaaac cataatggga acagttacac atacaaaact ttgtttataa tagttagaac
     2041 actaatcaga gagggagcga cgtaagattt agacattaca gatttttagt atagatatca
     2101 ttactattaa atagtcatat taatagttga taatattttt aaactcgaag atctagaatt
     2161 ttttgagaat ggcagtagaa gcagtagata aaaagatgga gatccctaat actggttgcc
     2221 atacacatca gtgcaaagaa tgtggctgtc tttgtcaatg tgactgtatc ctcatgaggc
     2281 agatctttac tataagcaag tgccaatggt gtagaaagaa tggctacgta aaattgtata
     2341 taaatcctga atttcagagt atgagatact atcaaaaaat gtatcaatat tttgattgct
     2401 tgtagtaaaa tcagcagcag ccgctccaaa tatagattgg attgtaatag tcccacctta
     2461 ccaacaaatg attctatgca cataaaccat tatcaagagc aaataaatgg aaagagacac
     2521 cacatcaccc acttttagaa caatacaatg ttgcttaata ctcaaggaca tcagcacaac
     2581 tatcaacgca cttgccctat caaatataat agcggatcac tgattaatcc aataataata
     2641 gacaaaaaaa taagaattac taatccacaa gaatagatat tgttaaagta ggtgtttgag
     2701 gagctaaccc tatagtccaa cggaaataaa tcttctttat ctaacaacta ctcctaagat
     2761 gaagaatttg aacttctaaa cacagatatt acaataagca acaataattt ttgtaaatac
     2821 aataatattg tcttgcacaa tattacacac tagtattctt aaaattagac atagacaagt
     2881 ccaagctatt tgatacatgt aaaattactg catttatgct atttactata gagaatttct
     2941 tgtagttata tttatttata ttggtaattc tgtttgaaaa ccttatatta tgataacatt
     3001 atagcaaatc atgaaacgtg tggaagccat tatcggtagt gagaaggttt tggatgttaa
     3061 cgaggcactg aagaaagttg gagtgagtgg atgcactatt cttgatgcaa agggcagagg
     3121 taagggagaa aaaccaatga tagaaagtgg cagaggaacc ggaagatttg cctcagaatt
     3181 ttcagtcaga tctaatattg ttacaatagt tgatgactca gaagtagaca aagtcattaa
     3241 cacaatactt gataccgtaa gtactggttc agctggcgac ggcaagattt tcatttcacc
     3301 aatcagcgaa gcgattgata taggcactaa gaaacgtggt gaagttgctg tcctataaaa
     3361 tatagtaaaa taataataaa aacagatata cgatctatct tttatcatag tttgtaaaga
     3421 acttttttgt ctctcctagc atgagcacct gtgctgctgc aattttaacg actattggta
     3481 gatcacatac aacctttcca atagataagc aatgacgttg gggcaatgtt ctgactatcg
     3541 atctaacagt atcattatct gctaaagaca ctttagatat cttctccaag tctgcatcat
     3601 ttgtaaaatt gaacagaaat atgttatcta cttgtcgata aattccatcg ccaatagcgt
     3661 ctggctgatt tgtgataaac gttgtataga ttccaaagtg tctcatcctg gtgacaatat
     3721 cttcccagta cgtgtccctg acgtagagat gagcttcttc ggcaaataga aagataggag
     3781 gaattgctat cttctccaat aattcaacca gtttagtcaa tattagttct acaatcattc
     3841 ttcttacaac aggtgctgct tttcccatgt taactatcat tgctacaccc ttacggtttc
     3901 tttcaatcac actttcaaac ctcagatcat cgccatcgct attattagaa aataatcggg
     3961 agccatgaat tacatggtat cttgaaataa gtgcatctct tattagttca ttaatattcc
     4021 aagtatttat tgcattgccc aaagcttcaa ttcttaatgt cgtctgttta ttttcaagcg
     4081 aatcccatat tctaaaaaat tcacgtaagg atgcagctgg agtatcaagc gcatttctta
     4141 acatactaga catagccgtc ttgccacagt aatcaagcga gaatttgagc ccatttccag
     4201 gttccagtat cattatttga tccttaattg aggaaggagt tccatcatga ttccaggcca
     4261 gaccaccata ttcattgtta agatcaaata caattacaaa tgctccatgt tggactagcg
     4321 ttttaactag catcttggaa agatgtgatt tgcctgattc ttttttccca gtaataatat
     4381 ttaatctgcc atctagatcc tctgcataga tctcaaattc ttcattttct gtcccagcat
     4441 cgccaatcga aataggaaat attcctgtcc ttccaagaaa ggagcatagt tcagaaattt
     4501 ttaaccgtct tattttagaa tatactcttg agggaagcca tgtaacatca cttgataatt
     4561 tatttgatga atctatggta gctcttattt tagtgtgaaa cagtcttgca tctctgatca
     4621 tttttgatag acttccaata ttgagaggat cgtgcaaatt ttccatacta gaagcagtta
     4681 ctacctcatc cttaacaata tcttctatca gagattgtga ggaaagatat tcttcatcat
     4741 agatctggac aatcatcttt ctctttgagt tttcatcttc aatcaacaaa taatcaccct
     4801 tgttagctgt atctgtttgc atcgctatca taatcagttc gttaccactt tttgatagaa
     4861 ttttcatatt ggtattgatc caagcagagt cctacggata tcttctgctg caagctctat
     4921 cacatcatag ttattcaata catggcttct aagacatgat atctcggtgc tagtaaaggt
     4981 cgaaatgtga tgagctagtc tcaatgtttc agggtatcct cctgcgattg aatcatttcc
     5041 aagtaaccta ccaagggttt cttctatgtt accattattt gtaacaacat ccgcacgtag
     5101 tacatgacta ttgttatttc caaactttac aagaagattg ttacctatag tatttcgaat
     5161 taagcttttg ataatcatct ctatatccat ataggctgga ccacggacct ttgtgagagg
     5221 actagaaatg ctatccaaaa ttttaatttt agtattttta ctgattccca ctatcgaatt
     5281 cttattgagt aagcaattct ctgctacttt ggtaataccc tgactcttgt tctcaaacag
     5341 tgatgatttt aacgagccat ctataaggat aatagatttt gtaagatgac tcgaaagttc
     5401 catctggatt gctctctcga ctcgtattct aattaatcgt tttgcagaat cactgtcaaa
     5461 taagacaagc tttgttaatc tatgatcaag ctctgattgc ttaatagttt cctcactcaa
     5521 ataaaacaat ataggtccaa ttttaaaatg cattaacgca tgctcactga ctgatatcgc
     5581 tattccactt tttacagcat aaagaatacc atcttcagtt tctgcaattt ggatgctgct
     5641 agagtcaagt gcagcaacta ttgtattccc tttaattggt tgaatagttg ttattgtttc
     5701 tgcacaataa ggattaggtc ttttacccca gccttctatc ggaacaagat ttttctcatc
     5761 aacactgaaa ataatttttt ttcctttgag ggctttgtga agttcacttg gtagacaatg
     5821 tcttagagtt ggataaaaca tatatccgaa ctcagtaaaa tttatatctg ttggaatatt
     5881 cagttgcgtg gtcatgttgt tcaacaataa aataacctcg atccttatta atgttgcgca
     5941 acatggacaa tatgagcagc aacaagttta tgtgatcaaa atgtcaccga tatatgattg
     6001 catgagtaaa caacctcaat cttcctccga agaagtcaaa ataagattaa aacatcggga
     6061 ttgggaggtt gaaataactt gtcttgagaa taaagtcaaa caggtagtag agaatgttct
     6121 ttctggtatc gataattcat atgctaatat tgatcctact ttgaacaatc agcttacaga
     6181 aataagaaaa gagattgact ctctaaaatt gcaaatcaat tcaaccagta ttaatcaaat
     6241 acaggcaata aatgcgacag agttacaacg caaggctata ccaaagggag gaacaacatg
     6301 tagaggatta cttgaaatac tactgtatga aggatatttt ggaacagaaa aacatttagg
     6361 tgaagttcat gaagaactct ccagacgtgg atacaattat gacagaactg ccgtgtcaca
     6421 ttcacttaca gatatggtaa gagaaagtat tctaactaga cttggaacaa tgagaaatta
     6481 tcaatatatt cagaagagac caccttctga accaccattc tgattatgat gatgaggatg
     6541 aggatgatga ggatagagag gattttgtct ttctggcgat tgtagatgcc aaccagtgaa
     6601 taccagaggt agtaattcta taaatgacag attcgcttcc atcccttgtg ttctctctta
     6661 ctacgtgtcc tgcttttacc aattcagata gccgtgagct aacagatttt ggattgagtg
     6721 atgttgcaga ttgaatttca gatatctgca ttccgtcatc tgacaatttg cccagatcct
     6781 ttgcaatttt tgaggctacc aactgtaagc caaccatttc tttatcagat aactttttca
     6841 tactatattc tactgtatcc gggattactc tgggaccttc tggagtaatt ttgattaaat
     6901 tcgaatatgt atctatgaga tcagttactg cataatttaa tgaaattttc tttgccaaat
     6961 cgattgctgg aacttgtttt gttagaaagg taatgacaga attaagaact gattcagcag
     7021 agccattgaa ctgtaccttt atatcaccta tgtttaccgt gacgttaaca tgcgagtcat
     7081 gattgttgtt agtgttgttt tcagccatct ttaccacacc ccatcatgaa atcctttttc
     7141 atttgtcttt ccttgtccgt cacatacaaa tgcagcccta gaagtatata tacacattct
     7201 tattttgata aaaaatgtac atataactta ggagacaatt ctcttgttat taacttatca
     7261 taacatgcca tgattttaaa aattaagaaa tagtaaggat gttataatga caatacgcac
     7321 taataatgtt agctaaaatg aaggagtcat tccaatccat cctagacgac ggaaatacca
     7381 aatcatcgat aatgcagaga gtgtagagat tatcaataca acaatcaaag ttgtatatgg
     7441 accaaagaag ttccaa
//
LOCUS       DATAAS010000238         2551 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4576192, whole genome shotgun sequence.
ACCESSION   DATAAS010000238 DATAAS010000000
VERSION     DATAAS010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2551
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4576192"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..482
                     /locus_tag="VHF08_03800"
     CDS             <1..482
                     /locus_tag="VHF08_03800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067805.1"
                     /translation="NAKTIVKLQEPTPSDKFIEIAMFGDASKKFWVAVNTNESGYIRV
                     YEHDNDGWSTDQPVIVAHANNQGLTITNGQRIIIDKLSIEDFTIASIAVYGKDEPTSA
                     VNTYGGDISFNVIYGNPMNSPLYYFPLAMIVGIGGLVVGLLVVKKRKPSSEEQTQHQ"
     gene            complement(436..1137)
                     /gene="nth"
                     /locus_tag="VHF08_03805"
     CDS             complement(436..1137)
                     /gene="nth"
                     /locus_tag="VHF08_03805"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEX2067806.1"
                     /translation="MTAKSIGSIISKMEKVLYHRKLPRLTALTELQMEEECDAFKVLI
                     GTILSARSRDENTKKVLNNLFIRFKNAKELAEADIQEIKAIIHSSGFYNVKAKRIKEV
                     SQLIIERFNGKVPDDLERLLDLPGVGIKTANCVLVYAFNKPAIPVDIHVHRISNRLGL
                     VTTRTPENTEAELSRIIDKKYWLKVNSTFVMYGQNVCLPIKPNCKVCQLKNVCKFYRN
                     ITDAVSAPQKKASFS"
     gene            complement(1454..2185)
                     /locus_tag="VHF08_03810"
     CDS             complement(1454..2185)
                     /locus_tag="VHF08_03810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEX2067807.1"
                     /translation="MGKRTLVRRRGRGGKQFRAITVGKLAPAKYPNFKLDEHHSGTVV
                     DIVHERGRDAPLARIHYDDNTYSYVPAPDGTTVGSRIEIGVGATATARNILSLESIPD
                     GTLICNIEKNAGDGGKLIKSAGSSALVFAHGTEGVTLKFPSGKFLAVNPKCRAMIGII
                     AGAGRKEKPFLKAGNRAKYMQAHGRLYPTVRGIAQAAVYHPHGGGRHQHIGRQSSVGR
                     TTPPGRKVGIISPRKTGRGRIKERK"
     gene            2380..>2551
                     /locus_tag="VHF08_03815"
     CDS             2380..>2551
                     /locus_tag="VHF08_03815"
                     /inference="COORDINATES: protein motif:HMM:NF014419.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067808.1"
                     /translation="MSIVLGVIVSQNTLSLKVLEAYTRDVGRGVARIDYDSMDSLSAS
                     TGDVIEIRGKRRT"
BASE COUNT          804 a          457 c          445 g          845 t
ORIGIN      
        1 agaatgcgaa gactattgta aaattgcaag aacccacacc aagtgacaag ttcattgaaa
       61 ttgcaatgtt tggagatgct tctaagaaat tctgggttgc agtaaataca aacgagtctg
      121 gctacataag agtctatgaa cacgataatg atggatggtc tacagatcag ccagtaattg
      181 tagcacatgc aaacaatcag ggtctgacta ttaccaatgg tcaaaggatt attattgata
      241 aattatccat agaagatttt accattgctt cgatagcagt ttatgggaag gatgagccaa
      301 cttctgctgt taacacatat ggaggagata tctcgtttaa tgtgatttac ggaaatccta
      361 tgaattctcc gctttattat tttccacttg ctatgatagt tggtattggt gggcttgttg
      421 ttggactgct ggtagttaag aaaaggaagc cttcttctga ggagcagaca cagcatcagt
      481 aatattgcga tagaatttac aaacattctt taattgacac actttgcaat ttggttttat
      541 cggaagacag acattttgac catacattac gaaagttgag tttactttga gccaatattt
      601 tttatcaata atgcggctta gctcagcttc agtgttttct ggtgttcgag tagtaacaag
      661 acctaatctg tttgatattc tgtgaacgtg aatgtcaact ggaattgcag gtttattaaa
      721 agcatatact aaaacacaat ttgccgtctt tatgcctaca ccaggcagat ctagaagtct
      781 ttctaaatca tcaggaactt ttccgttaaa tctttcaatt attaattgtg aaacttcttt
      841 gatcctctta gctttgacat tataaaaacc actgctatgt attattgctt taatttcttg
      901 tatgtctgcc tctgccagtt ctttagcatt tttaaaccta ataaataagt tgttgagaac
      961 ttttttggta ttttcatctc tactacgtgc agatagaatt gtcccaataa gtactttaaa
     1021 tgcatcacat tcttcttcca tttgcaattc tgtgagcgca gtaagtcttg gtaattttct
     1081 atgataaagc actttttcca ttttactaat tatgctgcca atagattttg cagtcaatat
     1141 agaaacacct ctaagaatat aataattctt tattacaaaa ttctatatat ttgctgtcca
     1201 atagcagtcg cttgcttttt atgaatacaa aaaatattgt cgttaccatt ttcgctatgt
     1261 cgttcatcat aacaattcaa cctaacagat ctgattaaaa tgtgctatga tagaatagat
     1321 taaatattta atgtaattgt ataatataca caatgaaata atgttttcta tcaatatgaa
     1381 atagccaaaa aggaaattaa aataggtttg atcttaaaaa aagaaataaa aatctggcat
     1441 attattattt ttattatttt cgctctttta ttctaccacg gcctgtcttt ctaggtgata
     1501 taatcccaac tttgcgtcct ggtggagtag ttctgccaac tgacgattga cggccgatat
     1561 gctgatgtct tccaccacca tgtggatgat acactgcagc ttgtgcaata cctctaactg
     1621 taggatatag tcttccatga gcttgcatat actttgctct attaccagcc ttcagaaatg
     1681 gtttttcttt tctacctgca cctgcaatta ttccaatcat tgctcgacat tttggattaa
     1741 ctgcaagaaa cttaccagaa ggaaacttta atgttacacc ttcagtgcca tgagcaaaaa
     1801 caagagcaga agaacctgct gatttaatta acttaccacc gtcgccagcg ttcttttcaa
     1861 tgttgcaaat taaagtgcca tcaggtatcg attctaaaga caaaatattt cttgcagttg
     1921 cagttgctcc gacaccgatt tcaattctac ttccaacagt tgtaccgtca ggagctggaa
     1981 cataggaata agtgttatca tcatagtgaa tcctggccag aggagcatct cttccacgtt
     2041 catgtacaat atcaacaaca gtaccagaat gatgctcatc taatttaaaa ttaggatatt
     2101 tggcaggagc aagctttcca accgtaattg ctctaaattg cttgccccct cgaccccttc
     2161 tacgtactaa cgttcgctta cccaaactta ctcaaaagag agacgcgcaa ataggtgatt
     2221 ttaagtttgt gttaatttaa tgtcaattta agacagataa caaataataa agctgtattt
     2281 aacattttat tagttaaaca catcttcata agatacaaga atcaatagat taaagatatt
     2341 acaactaaga tttgacagaa aggtagtaaa ggtataaaga tgagtatagt actaggtgtt
     2401 atcgtgagcc agaatactct atctctaaag gtacttgaag cttacactag agatgtaggc
     2461 cgtggagttg ctcgaattga ctatgattct atggattctt tgagtgcgtc tacaggcgat
     2521 gttatcgaga ttagaggcaa acgtagaacg g
//
LOCUS       DATAAS010000239         1913 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5115673, whole genome shotgun sequence.
ACCESSION   DATAAS010000239 DATAAS010000000
VERSION     DATAAS010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1913
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5115673"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(215..670)
                     /locus_tag="VHF08_03820"
     CDS             complement(215..670)
                     /locus_tag="VHF08_03820"
                     /inference="COORDINATES: protein motif:HMM:NF015331.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2067809.1"
                     /translation="MRTLNHAFVVNSDIDRVWEFYTDIKHLEIITPKEMKLKIINATT
                     IGQKLTQGSEILIVGKILLRKSTWHSRVTSLKPYEYVDEMLMGPFKKWRHLHRFHPTN
                     QKQTQVIDIVDFELPYGMIGKLLEGYAYHRLEKIFAHRKITTIKVLENT"
     gene            1192..1500
                     /locus_tag="VHF08_03825"
     CDS             1192..1500
                     /locus_tag="VHF08_03825"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067810.1"
                     /translation="MLLLIGMRFFLYVQIPTEAGNSIVQDPNFLQKIEDYINNVKAEA
                     AYFGPSNGNRTMFFIVNMDTPDKIPIILEPLFQEFKAKVEVHPIMILDDLKKAFSKLR
                     "
BASE COUNT          589 a          290 c          312 g          722 t
ORIGIN      
        1 gccccatgag atgtgacgat aataattaaa gcagttttag aaagacatat gctaaaatat
       61 taataaataa tattagattc gcagatctgt tttatctgag cattctcttg caacttgaag
      121 ctttgacatc tattctttag gaagttgtca agccttggct tgccgcgtct ttgatgcgct
      181 aaaaatatgt aatctagtat gcgtataata tagtttaggt gttttctaaa acttttattg
      241 tagttatttt tctgtgagca aagattttct caagccgatg atatgcataa ccttcaagta
      301 attttcctat cataccatat ggtagttcaa aatcaactat atcaattact tgtgtttgct
      361 tttggttagt aggatggaac ctgtgtaaat gtctccattt tttgaatgga cccattagca
      421 tctcatccac atattcatat ggcttcagag aagtaaccct agaatgccat gtactttttc
      481 ttaataatat ttttccgaca atcaaaattt ctgatccttg agttaacttt tggcctatag
      541 tggtggcgtt gatgattttg agcttcattt cctttggagt tattatttca agatgtttaa
      601 tatctgtgta aaactcccat actctatcta tatcactatt tacaacaaaa gcgtgattta
      661 aagtccgcaa atattaagat gttatattat ttcttaatct atttattgta atctctactt
      721 gttaggtgaa agtgtagtat tagtgtgggt tgttattctc tttttcttat ctaagttaca
      781 aaatatatac agtgcattat atatataaaa aatagaacgg tttgcaataa tttcattgta
      841 ttcttttgaa gttataccac aaccaatagc aactgcaaaa agacctgcat agattgtgta
      901 atgatatgct gtgtttgatg acgtatagct attcttataa tccatctcaa ttcaagtaga
      961 ggctggaact tctttttttg tctaatctgt atgatccttt aatacaattt ggattattta
     1021 ctgtaattcc tacttttgaa ttcatacgct aagaatctac aatatgcaca gttaatttga
     1081 agggctttat aattatcata ctattctctg ggttcacggc tattgcaact tgtttttact
     1141 ctttctgcaa tatatgcaaa atacaggaag tcttttatag gttccaacta attgttatta
     1201 ttaattggca tgagattttt tctttacgtt caaattccta ctgaagctgg aaatagtata
     1261 gtccaagacc ctaatttttt gcagaaaatt gaagattata ttaataatgt gaaagccgaa
     1321 gctgcatatt ttggtccaag caatgggaac agaacgatgt tctttattgt aaatatggat
     1381 actccagaca agattcctat aatacttgaa ccactgttcc aagaattcaa agcaaaggta
     1441 gaagttcatc ctataatgat tcttgatgac cttaagaagg ccttttcaaa gttgagataa
     1501 gtaaaagtag aatatacttt atccattata cagcaacaat agatcgcaga attttgtttg
     1561 tttagcattt tccttgtttt tcaatgaatt tggtttattt tataataata ttggcgtggt
     1621 taagcctgcc tgatgctttt aaatcgcaag ttctagagta tcatttttag acgttctttg
     1681 aagatatagt tgtattacag cgtgtttcat ttcatgaaat ttttagagtc aatttttcag
     1741 actgtctaaa tactcatcat tttagaatgc ttcaaatttc taatcagtca gtgaacgtca
     1801 agttggtcat ttaggccgtc agatccgtcg tcaagttggt caaagaagag aatatatggt
     1861 aatgacacga atacagtaat actcagtttg attattaaat ttgggttaaa gat
//
LOCUS       DATAAS010000240         2482 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3496866, whole genome shotgun sequence.
ACCESSION   DATAAS010000240 DATAAS010000000
VERSION     DATAAS010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2482)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2482)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2482
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3496866"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(212..898)
                     /locus_tag="VHF08_03830"
     CDS             complement(212..898)
                     /locus_tag="VHF08_03830"
                     /inference="COORDINATES: protein motif:HMM:NF012241.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp20/alpha crystallin family protein"
                     /protein_id="HEX2067811.1"
                     /translation="MPSSDKANRRRKEGGGGEGKEEKSFRPKLSDFKRKKTGEGRDKG
                     SLPHSRSMDNMRRRERLEEKSLQARRMDDIFEDFRNNIESILNPWSSSYLWHSPYKLE
                     IGEAAEKKDEGIRRTPLYDMVDKGDRYELEVELPGIEKDKIHVKATDDSIEISAEQLE
                     EERVEERKKKYVYNERSYRSFYRTIPIPEQILSSEVTAKMNNGILRIDLPKKMPTKPK
                     GVKGRSIAVE"
     gene            complement(1527..1721)
                     /locus_tag="VHF08_03835"
     CDS             complement(1527..1721)
                     /locus_tag="VHF08_03835"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067812.1"
                     /translation="MISKNCEKADHSNCTAQFYDNENNNQYQCECSCHVQILSPEDLQ
                     AEKDKQGITKADELRAETMI"
     gene            complement(2189..>2482)
                     /locus_tag="VHF08_03840"
     CDS             complement(2189..>2482)
                     /locus_tag="VHF08_03840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HEX2067813.1"
                     /translation="VILPYKVTAGSGVMFDALSHGLPFVATDLRFFREFAALGLGITA
                     KRNPHEFSKGLESLTSNYVKYKEAVNMFKEKLKWDSVAKQHSRLYHHAAARTE"
BASE COUNT          754 a          428 c          358 g          942 t
ORIGIN      
        1 aaactaaaaa taatattatt aaatttcgtt aatttaccca taatctttcg aatatataca
       61 tttgtgcgct cttgtcagtt tattgttagg ttttacttag aatcaaaaag attaagataa
      121 ctcatcaaga atatcgtcgt cgatccgagt catcaaaaat aagaagagtt agtaatgtgt
      181 ctgccttttt gtatttcaaa ttgtcattct atcattctac tgctatagat ctacctttaa
      241 ctcctttagg tttagtaggc atcttctttg gaagatctat tcgtaatatt ccattattca
      301 ttttagcagt aacctcagat gacaatatct gttcaggaat tggaattgtg cgatagaaag
      361 acctgtatga ccgttcatta tatacatatt tcttttttct ttcctcgact ctttcttcct
      421 ctaattgttc agccgaaatt tcaatagaat catctgttgc tttaacatga atcttgtctt
      481 tttctattcc aggtaattcc acttctagct catatctgtc tcctttatca accatatcat
      541 atagaggtgt tcttcttatt ccttcatctt ttttttctgc tgcttctcct atctctaatt
      601 tataaggaga atgccacaga tatgatgatg accaaggatt caatatactt tcaatattgt
      661 ttctgaaatc ttcaaaaata tcatccatac gtctagcttg caaggatttt tcctctagtc
      721 tttctcttct tctcatatta tccatacttc ttgaatgtgg caatgagcct ttatctctac
      781 cttctcctgt tttttttctt ttaaaatcgc tgagcttagg tcggaaagat ttttcctctt
      841 taccttctcc tcctcctcct tcttttcgcc gtctattggc tttgtcagac gaaggcatat
      901 actataatag caataataat atttgacaat ttaatattat agcattttat ataaaatttc
      961 tatctttaga ttacatatgg cgtattaaat ttaacattat cctattcgtg aagtatagaa
     1021 ttctgacatg tgcattacgc cagaatgcat agctaaaatg tgttagatca gagaatttat
     1081 ttaaatagaa tcgcatatta tattatatga tatagtatca aaaatattta taataagtgt
     1141 gttattattg ttttttatag aagaaaaaca ttagtaagaa tagaaatcag ctaataatga
     1201 gtaattaacc aataaataac attgaatact tttattttac acggaagcaa aacatagtta
     1261 aactcagaaa tgatatactg atccgatctg atatattcat ttctgttctg ctaccacgat
     1321 gtattttaca aatcagatcg gaattatttc tattaatttt atgtctgaag ggttctattg
     1381 aagagaaatc taagaagata tatattataa attatctcta atatgtctca actgatgagt
     1441 tttattgggt gctttcttcc tataaacgtg cagtgaacag tggtttaaaa gtcgttttgg
     1501 caatggaact aactaataat tgattattat atcattgtct ctgcccttag ttcatccgct
     1561 tttgttattc cttgcttatc tttctctgcc tgtaaatctt caggtgacag gatttggaca
     1621 tgacaactgc actcacattg gtattgatta ttgttctcat tatcatagaa ttgagcagtg
     1681 cagttactat gatctgcttt ttcacaattc ttggaaatca tatagtgtat acttttaaca
     1741 aatttatttc atttgaatct atgcatggtt atacatattg aagaaggcat ttagagtctt
     1801 aatataaata atttgtaata gtgatattga acccgtgtca ttaatggggc cgcaggtgtt
     1861 tctctctact aacttcataa ggatccatta caagacatta gataaatatt ttgtattatt
     1921 attactgctg ctactactac tattatgctt ttttatagaa aataatattg aaatcatcat
     1981 ccactagaaa aagctttaca accttctact tttaaacagt ccttggaatt tgaaaacaaa
     2041 gaaaatcctt aacatcaagg atattgtctg tttatttctg gagcttttag cgcatataag
     2101 agcatgtcta agagtcttgc tcatcagttc ggccaattat atcataaaat attattatga
     2161 catgggtcgg cgtggacgcg cgacgctgct actctgtccg tgctgcagca tgatgatata
     2221 acctagaatg ctgtttagca acagaatccc attttagctt ttccttaaac atattaacag
     2281 cttctttgta tttgacataa ttactggtga gactctctaa tccttttgaa aactcatgag
     2341 gatttctttt ggcagttatt cccaagccta gggcggcaaa ttctctaaag aatcttaaat
     2401 ctgttgctac aaatggtaat ccatgtgata aagcatcaaa cattacacct gaaccagcag
     2461 ttactttata tggtaatatg ac
//
LOCUS       DATAAS010000241         1628 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1422305, whole genome shotgun sequence.
ACCESSION   DATAAS010000241 DATAAS010000000
VERSION     DATAAS010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1628)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1628)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1628
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1422305"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(297..800)
                     /locus_tag="VHF08_03845"
     CDS             complement(297..800)
                     /locus_tag="VHF08_03845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEX2067814.1"
                     /translation="MLSDWFSRVGSAIPRGFSRHYILGLLKEQPMTGKEIIDKAILQS
                     DGKWRPSPGLIYPLLGRLLEENLIAEIDNGKYKITGKGLDIAADIESVHNILQKQLDV
                     MLRVGNIGRFMAMDLIDRISTIGSTLSSNLDRMTEQERSKYRQFLMTELNKLDEQENN
                     KEVVRVE"
BASE COUNT          505 a          266 c          219 g          638 t
ORIGIN      
        1 cttctattcc tttacaagta aatacgagtt gacgggctgg tcagcatgaa ttacgtttaa
       61 aaagtaattt tatgtttcct taatagcgga gcttgcttta caataatgtt cttttattat
      121 ttttgtttca ttagtagtta cctattctaa taagctcata ctattgataa gctcattatt
      181 tgctgtacgc aatcataatc cactgaagac aaatggttac tttcctttaa tatttttaat
      241 tactgcttta ttacacacaa attagtctaa tgaactagga tgaattagtt taatctctat
      301 tcaaccctta ctacttcttt attattttcc tgttcatcta atttgtttag ttctgtcatc
      361 aagaactgtc tatacttgct tctctcttgt tctgtcattc tatcaagatt agagctcaaa
      421 gttgacccta tagtggatat tctatcaata agatccatcg ccatgaatct accaatgttg
      481 ccgactctca gcataacatc tagttgtttt tgtaaaatgt tatgaactga ttctatatca
      541 gcagcaatat caagaccctt tcctgttatt ttgtatttgc cattatcaat ttctgctatt
      601 aaattttctt caagcaatct accaagtagg ggatatataa gtccaggcga cggtctccat
      661 ttgccatcac tttgaagtat ggccttatca ataatttctt ttcctgtcat aggttgctct
      721 ttcaataatc cgaggatata atgtctagaa aatcctcttg gaatagcact tcctaccctt
      781 gagaaccagt ctgacaacat atcactagta atatcgctag cgatttatta acttttcggc
      841 ttcaaatact atcctaatat agctattatt atgtaacaat caataagatc taatttaatt
      901 atctgatata tagatttaaa gaagtttgaa atcttgtctt gaattatcaa ttttaaagga
      961 taattaacta atgatgtgat tttattctga ttgaatatgt gttttcatag tagtttcctt
     1021 agtaagataa ttcttaatgt cttacacaac tactttaatc tcaagataat tcttacctgg
     1081 ctgccagcat tagtttattg ctcttatcat tgttctgctg tcttcgttaa cttaactata
     1141 ttttattagg aattgtaaat ttgtttcttc tgtctgtttc catctcaggt tataaagaaa
     1201 atatctctaa ccagttcctc agatcagaat agataaagtt gttttctaga tatagaatgg
     1261 ttaaatgtag tttaatgttc ccttcttttt ttagaagtga agctttcagt agcttcattt
     1321 aattttattt tatggtatag tttgttcatt ccaataatct tttgacattt ttagatagtt
     1381 gactatttaa tgattatttc tatgtcaaat aacattttgg ctttttgatg ttcaaaaagt
     1441 ctacatttcc aatacgttaa ttatcatgga agagaatggc aagcgtagaa aaaggaatag
     1501 ttcaacatca tattattcca atataatcac aatgtaatta agagtataat tagaatagac
     1561 tacgatttaa taatatcaat aaacaaaatt atatgatgaa acacagcaat cacgattaca
     1621 taaaggct
//
LOCUS       DATAAS010000242         6755 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1422643, whole genome shotgun sequence.
ACCESSION   DATAAS010000242 DATAAS010000000
VERSION     DATAAS010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6755)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6755)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6755
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1422643"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(376..1083)
                     /locus_tag="VHF08_03850"
     CDS             complement(376..1083)
                     /locus_tag="VHF08_03850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067815.1"
                     /translation="MYFVNWQRNISIEYLGGRKVVVKRNKSTKVFHEYLLIFTYTLAS
                     ILLAHPSAPPLLGKVMIHNEGYDMRRNLQKLGIPTPELISISDSVIIEEYIQQGDLYR
                     AFSDGENSTLAFQAGVLTGKLHKANYVFTDNKSQNYLVASDNSLVRTDLGFIQKKGSI
                     FSRSIDIASFLASVIDFGNSQYQAIERGFFYGYKSETKNSFPYLSIILRNILSFGFAS
                     NHAAMFQNMVRDSLKWL"
     gene            1139..1843
                     /locus_tag="VHF08_03855"
     CDS             1139..1843
                     /locus_tag="VHF08_03855"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2067816.1"
                     /translation="MQYVIESRKLLIHEGHKNARKFFNSKTAPSYDFIVRITTFGQDY
                     VWKTHMSSIIDKRENILDLACGTGILSSILSKSDKKQVIGLDLAFDYLKIAKKKRRYD
                     FFINGNAETLPYKSDSFDTIISSYLAKYVDIRKLIEECWRVLKHNGIIVFHDFTYPQN
                     AIIRSLWDAYFVVLQIIGNFIGSWEIVFRDLNKVIRNTKWIEEMMYVIRQTGFTSISC
                     DFYTAGTAAIVSAKKP"
     gene            1840..2541
                     /locus_tag="VHF08_03860"
     CDS             1840..2541
                     /locus_tag="VHF08_03860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067817.1"
                     /translation="MNKDTRLDEWFVPKFGPIKFRVFIGLLFLPYTGMCISFTIIGSL
                     LSPIVLWERVIAISVIYFLALGLSAHAADVLGSKTKPWGNYLNKQQLWLLTISGLTVA
                     YAIGIYYIIFYVPLLCIVAILEGFFVFAYNLELFKGFFHNNFWFSLSWGVLPVLAGFI
                     MQTNSIGFLSIIVSLIAGLESYVEIRTSRPYKELKRTGHDKNRMKKLETRLKSVSLGT
                     IIFATILVVFRLVAR"
     gene            2615..3058
                     /locus_tag="VHF08_03865"
     CDS             2615..3058
                     /locus_tag="VHF08_03865"
                     /inference="COORDINATES: protein motif:HMM:NF014054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate pyruvate-lyase family protein"
                     /protein_id="HEX2067818.1"
                     /translation="MLEKIAELECKADIALPLYTKILISETGTIEQILSILSNSKTEV
                     KILKQKETPELIKRQICIINKNTGERLAYARSCIFPIYLPKKIMEKIKEKNEGIGNII
                     VNSKLETFRDILKIGYDSNTKSVFRIYRIIHKRQVVFKIKEIFSI"
     gene            complement(3087..3160)
                     /locus_tag="VHF08_03870"
     tRNA            complement(3087..3160)
                     /locus_tag="VHF08_03870"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3124..3126),aa:Ala,seq:ggc)
     gene            3252..3674
                     /locus_tag="VHF08_03875"
     CDS             3252..3674
                     /locus_tag="VHF08_03875"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEX2067819.1"
                     /translation="MALEQSIGAVIRYCTSVENAESEFLLLKNRRGFWGFPQGHKEKG
                     ETEIQTLIREVFEETGIAYLYIQSYIGRIHYSYFRADGMKSEKEVRFYFATTTTRNVI
                     ISKEHDDYKWVKFSDALCILDHRQLKSILVRGHRKGLY"
     gene            3772..5346
                     /locus_tag="VHF08_03880"
     CDS             3772..5346
                     /locus_tag="VHF08_03880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX2067820.1"
                     /translation="MAAGRRIVLTADRSLMTNYRGNFLYGFIACGPYELVPEFVFDKL
                     FCPSVETDKSTGEVKVAQCGLRRIEGALLKEYKREDIFLAHPEMLDKCIGSDTKVVGI
                     NVMDPLGMAPVTTTMSPEKLSYVAMKFKKMCASIIQLKKKYDFKVVVGGNGSWELAKP
                     DRMKIHGIDTVVIGEADELALDLFHDLEADDAPELLHTFVRNIDNIPLIRGPTINSLI
                     EAMRGCGRGCDFCDVNKRSKKDIPLDRLQTEAKINLKYGFDSIWLQSDEMLLYGCDNK
                     NFIPNSDAILDVWKGLKSVGANFVGTTHMTLSAVASSPDLIKNLSAVNNMDASGRWLA
                     TNLGVETVAPRMVKKHLGVKTKPYQPEEWGAVVREGCKILNQNHWFPALTLIIGWPDE
                     TPDETQYTIDLIQDFREINMRGLVAPLLYQDFSEKNSMHFGNLNEAQFTLFWKCWQHN
                     LWVINDIIPIIIRNKTYGPAMKVFMAGLIKAGTWAIMRYLRGLSKDLFDGQIPEDIVE
                     RYTRQRSVTAPVPPRL"
     gene            complement(5371..5706)
                     /locus_tag="VHF08_03885"
     CDS             complement(5371..5706)
                     /locus_tag="VHF08_03885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067821.1"
                     /translation="MKFEFEEFSTIEDVFLYLVSVAPYMKQVLPVSSYKGYVFSIVPL
                     TPLSGDVLMMIYTKGKIEPGMIEFDISTKKYKIVTAVERADKNYFIILTPRNATIADS
                     AIQYLESKE"
     gene            complement(5766..6608)
                     /locus_tag="VHF08_03890"
     CDS             complement(5766..6608)
                     /locus_tag="VHF08_03890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX2067822.1"
                     /translation="MVVDNKGAITYVRVLKEDLAIIRVTPSDGPVPDFKAGQFVTLGT
                     YIPAEGKIIRRAYSIASPPEQKKHFELLIRWVRKPVPGRLTTDLFNKKEGDEIFWVKP
                     VGIFTINEKMHDGSPDNRRMVLIGGGTGLAPFIAYTLHLKSIGSKREIIVLHGASYVD
                     ELSYRELLTDLEEESLDKGKDKWNFRYRASISRPQEWFNRTWSGQKGRVESFLRPKAG
                     TDRSPLEELVGEKITPENTSFYVCGWQGTVDGALDYLVPKGFVTERNKRKDGSYDVKF
                     ESYG"
BASE COUNT         2243 a         1136 c         1238 g         2138 t
ORIGIN      
        1 cttctattaa aactagacag ggtttatcta cattactgga agtaaaggaa aggaagtaac
       61 gcaatcaaga tatttcatta tatatcaaga agaatctcga cgaatcttgt cccgtgtgac
      121 tcagtcttta tctgtgaact catgtccaaa agatgttgaa tttttttgat agagagaatt
      181 taaatattta aaggtataaa aaaataattt cttagttagt acgaaatatc aaagaaatca
      241 tctcgaagat acaatacaaa tcactaaacg aatcaataaa gaaaagtacg gaattaatat
      301 tttctattta cttaagtata ataatttctc ttataaaatt tctttcctaa acttttttct
      361 catatctatt tagattcata gccattttag agagtctcta accatgtttt gaaacatcgc
      421 agcgtgatta gaagcaaaac cgaacgaaag aatatttcgc aatatgatag aaagatatgg
      481 aaaactattc tttgtctctg atttgtatcc ataaaaaaaa cctctttcta ttgcctgata
      541 ttgagagttc ccaaaatcta ttacacttgc aagaaatgaa gcaatatcga tactccgtga
      601 aaatattgaa cctttttttt gtatgaaccc taaatctgtt cttacaagag aattgtctga
      661 tgccacgaga taattttgag acttattatc tgtaaaaacg taatttgcct tatgcaattt
      721 cccagttaaa actcctgctt ggaaggctaa tgttgaattc tcaccatctg aaaatgctct
      781 gtaaaggtct ccttgttgta tatattcttc aatgataacg gaatctgaaa ttgaaatcaa
      841 ctctggcgta ggaattccta acttttgtag gttccttctc atatcataac cctcgttatg
      901 tatcataact tttcctagaa gaggaggagc agagggatgc gccagtaaaa tggacgcaag
      961 agtataagtg aatattaaga gatattcatg aaaaactttt gtagacttat tccttttgac
     1021 gaccactttc cgtccaccaa gatattctat agatatattt ctttgccagt taacaaaata
     1081 caaattattc ctataatata ttgcgatctt cctgtataag ttttcaatat ataatagtgt
     1141 gcaatatgta atagaaagca gaaaattgtt aatacatgag ggacataaaa acgctagaaa
     1201 attctttaat tctaagactg cacctagcta tgacttcatt gttcgtatta ctacctttgg
     1261 acaggattat gtttggaaaa ctcatatgtc aagcatcatt gataaaagag aaaatattct
     1321 cgaccttgct tgtggaactg gaattctttc ttcgatacta tcaaaaagtg ataaaaaaca
     1381 agttataggt ttggatttag cctttgatta tttgaaaatt gcaaaaaaga aaagaagata
     1441 cgacttcttt attaacggta atgcagaaac actaccttat aaaagcgaca gttttgatac
     1501 tattatatcg tcatacctgg ccaaatatgt ggatataaga aaattaatag aagaatgttg
     1561 gcgtgtatta aagcataatg gcatcatagt ttttcacgac tttacttatc cacaaaatgc
     1621 tattatccga agcttatggg atgcatattt tgtagttctt caaataattg gtaactttat
     1681 aggttcttgg gaaattgtat ttagagatct gaataaagtt ataagaaata ctaaatggat
     1741 agaagaaatg atgtatgtta tacgacagac aggattcacg agtatttctt gcgattttta
     1801 tactgcggga accgctgcaa ttgtttcagc gaaaaaacct tgaacaaaga tacccgatta
     1861 gatgagtggt tcgtgcctaa attcgggcct ataaagtttc gtgtttttat aggattgcta
     1921 tttcttccat atacaggcat gtgcatttcc tttacaataa tcggttcgct gctctcacct
     1981 atcgtattgt gggaaagagt tattgctata tctgttattt attttctagc actaggactg
     2041 tcagcacatg cagccgacgt cttaggctct aaaactaagc catgggggaa ttacctcaac
     2101 aaacaacaat tatggctatt aacaatttca ggtctaactg ttgcatatgc cattggtatt
     2161 tattatataa ttttttacgt accactactt tgcatagttg ctatactaga gggatttttt
     2221 gtttttgcat ataatttgga actattcaaa ggattttttc ataataattt ctggttttca
     2281 ttgtcttggg gagtattacc agtactggct ggatttatta tgcaaactaa ctccatcgga
     2341 ttcttatcaa taattgtatc tttaatcgca ggtctcgaaa gttacgttga aattagaaca
     2401 tctagaccat ataaagaatt gaaaagaact ggacatgata aaaatagaat gaaaaaactc
     2461 gaaactagac ttaaatcagt tagtttagga acaataattt ttgctactat cttggttgtt
     2521 tttagattgg tcgccagata gtttttaata atgcatatta ttgtaaaaat aattgaccgt
     2581 tgtttcagta actataaaag attctgggtg gtgtatgtta gaaaagatag ccgagctgga
     2641 atgcaaagcc gatatcgcac ttcctctcta tacgaaaatc cttatctcgg aaactggaac
     2701 aatagagcaa atattgagta tattgtcgaa ctccaaaact gaagtaaaaa ttctaaaaca
     2761 aaaagaaact cctgaattga tcaaaagaca gatatgtatt attaataaaa atacagggga
     2821 aagattggca tatgcacgat catgtatttt tcctatatat cttcctaaaa agataatgga
     2881 gaaaattaag gagaaaaatg aaggtatagg aaatattatt gtaaattcaa aattagaaac
     2941 ctttagagat atattaaaaa taggttatga ttcaaacacc aagtctgtat ttagaattta
     3001 ccgaattata cataaaagac aagtagtctt caaaatcaag gagattttta gtatataatt
     3061 cgttataatt aaatatacaa aaggtttgga ccgggtggga ttcgaaccca cgacctcagc
     3121 aatgccaatg ccgtatccta ccagactaga cgaccggccc tgcattaatc aacagtttta
     3181 ttaggatatt aatacgttta agataaagta acaatattat aattatccta atttctcagt
     3241 attggtatag cgtggcactt gagcagtcta ttggggcagt tataagatat tgcacttccg
     3301 tggaaaatgc agaatctgaa tttcttctcc tgaaaaatag aagaggtttc tggggttttc
     3361 cacagggaca taaagaaaaa ggggagacag aaatacagac cctaataaga gaagtattcg
     3421 aagaaacagg aatagcatat ctgtatattc aatcatatat cggtagaatc cattattctt
     3481 atttcagagc tgatgggatg aaatcagaaa aggaggtcag attttatttt gcaaccacga
     3541 ctactaggaa tgtaatcatc tcaaaagaac acgatgacta taaatgggta aaattttcag
     3601 atgctctgtg cattcttgat caccgacagc tcaagtccat attggttaga ggtcacagaa
     3661 aaggtctcta ctgattaatt aaactgccta acctacagac cagagtagaa acgttatggt
     3721 aatagattta tatctaatcc gtagacgaaa tgcagaggat acagaataga aatggcggct
     3781 ggtagacgta tagttttaac agcggaccgc agtctgatga ccaattatag gggaaacttc
     3841 ctttatggtt tcattgcgtg cggaccttat gaactggtgc ctgaatttgt ctttgataaa
     3901 ttattttgtc caagcgtcga gacagacaaa agtaccggag aggtcaaggt tgcccaatgt
     3961 ggactaagaa gaattgaagg agcccttttg aaagaataca agcgtgaaga tattttcctt
     4021 gctcatccgg agatgcttga taaatgtata ggatcagata caaaagttgt tggtattaat
     4081 gtaatggatc cactaggtat ggcacccgtt actacgacaa tgtctccaga aaaactgtct
     4141 tatgttgcta tgaaatttaa gaagatgtgt gcttcgatta tacaattgaa aaagaagtat
     4201 gacttcaaag tagttgtcgg tggaaatggt tcatgggaat tggctaaacc tgacagaatg
     4261 aagatccatg gaattgatac agttgtgatt ggcgaggctg atgaacttgc actggacctt
     4321 tttcatgatc tagaggcaga tgatgcgcca gaattacttc acacattcgt tagaaatatt
     4381 gacaatattc ctctgataag agggccgact ataaattcat tgatagaagc aatgcgtgga
     4441 tgtggaaggg gttgtgactt ttgtgatgtc aacaaacgct caaagaaaga tataccattg
     4501 gataggctac agaccgaggc taagattaat ctgaaatatg gctttgattc tatttggctt
     4561 cagtcagatg agatgctcct ttatggatgt gacaacaaga atttcattcc aaattctgat
     4621 gcgatattgg atgtgtggaa aggattaaaa tctgtaggtg caaattttgt tggcacaact
     4681 catatgacat tatcggctgt ggcatcttct ccagatctta tcaagaatct ttccgcagtc
     4741 aacaatatgg atgcaagtgg aagatggctc gccacgaatt taggagtaga gacagtagca
     4801 ccgagaatgg tcaaaaaaca tctaggcgta aagacgaagc cttatcaacc agaagagtgg
     4861 ggtgcggtag taagagaggg ttgtaaaatt ctaaaccaaa atcattggtt tcccgcattg
     4921 actcttatta taggatggcc agatgaaacg cccgatgaga cacagtatac aatagatctg
     4981 attcaggatt tcagagaaat aaatatgaga ggtttagttg cgccactact ttatcaagac
     5041 ttttctgaaa agaattcaat gcactttgga aacttaaatg aagcacaatt cactttattc
     5101 tggaaatgtt ggcaacacaa cttatgggta atcaacgaca taattcctat aattatcaga
     5161 aataagacat atggtcctgc aatgaaagta ttcatggccg gcttaataaa ggctggaact
     5221 tgggccataa tgagatatct tcgaggatta tcaaaggatc tctttgatgg acagattcct
     5281 gaggatattg ttgaaagata caccagacag agatcagtga cagcgccagt accgccgcgt
     5341 ctctgaaata tatttttctc aattatatat ttattcttta gattccaaat actggattgc
     5401 actgtctgca atagtcgcat ttctaggtgt taaaatgata aagtaatttt tatctgctcg
     5461 ttcaactgct gtgactattt tatatttttt agtcgaaatg tcaaattcta tcattcctgg
     5521 ctctatctta ccttttgtat aaatcatcat gagtacgtct cctgaaagag gtgtcaaagg
     5581 gacaatggaa aacacatagc ccttatagga gcttacaggt agaacctgtt tcatatacgg
     5641 tgcaactgac actaggtaaa gaaaaacatc ttctattgtt gagaattctt caaattcaaa
     5701 tttcatacac tagttgtcga tgtttccatg atataaggct ttaaaaaata aaaaatgaac
     5761 gtaacttatc catatgattc gaactttacg tcatagcttc catcttttct cttatttcgt
     5821 tcagtaacaa aaccctttgg aaccaagtaa tcaagtgcgc catctacagt cccctgccat
     5881 ccgcatacat aaaatgaagt attttctggt gttatctttt caccgactag ttcttccaag
     5941 ggtgatcggt ctgtgccagc cttaggtctt aagaaggatt ctactcttcc tttctgacca
     6001 ctccatgttc tattgaacca ttcttggggt ctgcttatac ttgctctata ccggaagttc
     6061 catttatcct ttcctttatc taagctctcc tcttccaaat ctgttaataa ttcccgataa
     6121 ctcagctcat cgacgtaact agctccatgc aagacaatta tctcacgctt acttccaatt
     6181 gattttagat gtagtgtata tgctataaaa ggcgccaaac ctgtaccgcc tcctattaga
     6241 accattcttc tgttatcagg tgatccatcg tgcatttttt cgttaatagt aaatattcca
     6301 acaggtttga cccaaaagat ttcgtcacct tcttttttat tgaacaagtc agtggtgagt
     6361 cgacctggaa caggttttct tacccatcta ataagcaatt caaaatgttt cttttgttca
     6421 ggcggagaag caatagaata tgcccgccgt attatcttgc cttccgctgg tatataagtt
     6481 cctaaagtaa caaattggcc agctttgaaa tctggaacag gaccatcaga aggtgttaca
     6541 cggatgatag caaggtcttc cttgagtaca cggacataag ttatcgctcc tttattgtca
     6601 actaccatac actcctcaaa ttcaatttat gctaaataaa tatattgtta tcatgtcgat
     6661 aggtaattct tatttggaaa gtaaatgctt tatcaaataa tgacaagatg gttcgataca
     6721 aaagattttt ctcgtaattc taatgaaata gatca
//
LOCUS       DATAAS010000243         1585 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_260188, whole genome shotgun sequence.
ACCESSION   DATAAS010000243 DATAAS010000000
VERSION     DATAAS010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_260188"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..270
                     /locus_tag="VHF08_03895"
     CDS             <1..270
                     /locus_tag="VHF08_03895"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0016836 - hydro-lyase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEX2067823.1"
                     /translation="FSGATRGFMVGHVAPEAMVGGPIAMVKNGDEIVIDINKGKIEIM
                     ISKNEMTKRKSEWRPLKPRYTYGALAKYASLVQSSSEGAVTLPLR"
     gene            1271..>1585
                     /locus_tag="VHF08_03900"
     CDS             1271..>1585
                     /locus_tag="VHF08_03900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067824.1"
                     /translation="MLKRFQHFYLMKKKASIVIFIISILIIVGYISSSELLSTKNKNV
                     HSTIVPENKAISFIARGPIVSLLYNEGASTSTFDGNNYEGNKPSAKSPLASGGLFSTH
                     SDS"
BASE COUNT          543 a          262 c          266 g          514 t
ORIGIN      
        1 ttttcgggtg cgacacgggg atttatggta ggtcatgttg caccagaagc catggtagga
       61 gggccaattg caatggttaa aaatggtgat gaaatagtca ttgatattaa taagggaaag
      121 atagaaataa tgatatccaa aaacgaaatg actaaacgaa aaagtgaatg gaggccatta
      181 aagcctcgct atacttacgg agcgctagct aaatacgctt ctctcgtaca atcatcatct
      241 gagggcgcag ttactcttcc cctacgatag gaataatctc tgtttgcaat catcaagaaa
      301 atgccaatca catcattcac ctcactttct tcagtttttc taaccattta ctataaccat
      361 ttaagtcgca taaaatcatc acaagtatga tcaaaagatt gttctatgct ctgaattact
      421 aacctcggga tatcgtcttg gtttatttta aaaaaagatt atttataata attacgacca
      481 tacgacgcag cagatcaacc agagtcttaa tcaatatgat aatgcaaaac gaaaaggttc
      541 tctatctttt atactgtcaa tctaggtagt gaaaaaagaa ataagctctg gctgtttata
      601 tttctttgtt atatatagca tattatttgt agagagtatc aattacaata ggagaaacta
      661 gtcatagagt tcatgtgata gaaaaaagca cgatgttgca gtcatagtga agcgataaac
      721 aagttaagaa ggccataaca aagagaatat gtcaaccaaa ctgctagtta ttagagcata
      781 tcgtcagaca cactcaaagg attctggttt ctaatctcag ttaaggatag tttatcaact
      841 gtcttgtaga gatatttgaa gataaaatgt ctgctgatag gttagtatat ttctaaatga
      901 taatggagac taaaacattt aaagcattga ccattcctct acatttttct tttataccaa
      961 caatgcatca tattgcatta taatatagtt tttattttat gattaacata ttgaacctat
     1021 gccattgatc gataatgatc tgatctatta gagaatgtcg aactattgag cacaatacgt
     1081 actttattgc tttataatgg tgtattagaa actctctagc ctcctaaatc ataaataaat
     1141 aagaaatagc ttgatcgcta cgcattttta cgttctttgt ctctttctat aatctactga
     1201 attaagtgca ttaatggctg ctccatgtat tattttgtta tgtttctgat taattaatat
     1261 agacgtaaac atgttaaaaa gattccagca cttttatttg atgaaaaaga aagcttcaat
     1321 tgtgatattt ataataagta ttctgattat cgttggatac atatcttcgt ccgaattgct
     1381 ttcaacgaag aacaagaatg tacactctac cattgttcca gaaaataagg ctatttcttt
     1441 tattgccaga gggcctatag tatctctatt atataatgaa ggcgcatcaa catcgacctt
     1501 cgatggaaat aattatgaag gaaataaacc atcagctaaa agcccattag cgtctggcgg
     1561 attgttttct acacacagcg attct
//
LOCUS       DATAAS010000244         3113 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_809744, whole genome shotgun sequence.
ACCESSION   DATAAS010000244 DATAAS010000000
VERSION     DATAAS010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3113)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3113)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3113
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_809744"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1169)
                     /locus_tag="VHF08_03905"
     CDS             complement(<1..1169)
                     /locus_tag="VHF08_03905"
                     /inference="COORDINATES: protein motif:HMM:NF014425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0000030 - mannosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006493 - protein O-linked glycosylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phospholipid carrier-dependent
                     glycosyltransferase"
                     /protein_id="HEX2067825.1"
                     /translation="MSAYTHLLNPIGFPPGPSNDENIYIARGLRILNGLGLTEAYLFD
                     HPYFAQLLLAGIFFVIGYPSSLHPVVGDLHSIEMLYLVPRILIGVFAVIDTFLIYKIG
                     ERHYNRTAALIASIIFAVMPIIIWQTRWVLLESIQLPFLLASILFALYLQPFLKNSNV
                     YNKNKNMLLVLLSGYLIGLAIFTKLPVFTMIPLVAFLVYRNTNRNLKVLGLWFVPVIL
                     IPMIWPASAASIGEFNNWFHDVFIQTQRGVENSFFISLNYNFNIDPVFHILGAAGLVY
                     AIVKRDFVLLLWIAPFLIFIYLIGFVSVYHFVPVYPAFCIAIAKILVDISNIIKKQRI
                     ARMLPYIIIFAIGSFGLVASSMLIIKYDNLSYFETTAFLSRYLHDNKDSITVIGNP"
     gene            1886..2734
                     /locus_tag="VHF08_03910"
     CDS             1886..2734
                     /locus_tag="VHF08_03910"
                     /inference="COORDINATES: protein motif:HMM:TIGR00180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0000910 - cytokinesis [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEX2067826.1"
                     /translation="MSSAQGLFQELPIRQLRTSLNAIRENNPAALTELASSIKEKGLM
                     QPIVVRSKKSYYEIVAGHRRFYACKFLHWTRVMCHVVEVDDKEAYELSLIENLQQKSM
                     NPIEEGKAFRQYVKKFGWGGESDLARKIGKSQEYVSRRIRLLDLPEEMQQEIMRNRIS
                     VGLAQELLPLHKSESQEAIKFIEENQLNSKETRELVRVMRSKGSMRFSLPFGNSNSSA
                     SDNNEQCEELISSTNPYTGIYETVNKLNIKTNNTMSRNEKEELVRLANNIFKKSVLAL
                     RISLRI"
     gene            2782..2967
                     /locus_tag="VHF08_03915"
     CDS             2782..2967
                     /locus_tag="VHF08_03915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067827.1"
                     /translation="MRERGLLRDYDAVENDGIDSRNSKWLLREVIMQHRLQLHNQLDI
                     MMKEQQKITQVLQLDFC"
BASE COUNT         1116 a          516 c          602 g          879 t
ORIGIN      
        1 gggtttccga ttacagttat cgagtcttta ttatcatgca aatatcggct gagaaatgca
       61 gttgtttcaa agtaggataa attatcatat tttattatta acatactact ggctactaac
      121 ccgaaagacc ctattgcaaa aattataata tagggtaaca tgcgcgcgat tctctgtttt
      181 ttgataatat ttgagatatc cactaatatt ttggctattg caatgcaaaa tgcaggatac
      241 accggaacaa aatgataaac tgagacaaat cctatgagat agataaagat aagaaatgga
      301 gcaatccata ataaaagcac aaaatctctt tttacaattg catatactaa acctgctgca
      361 ccaagtatat gaaaaactgg atcaatatta aaattataat ttaaggaaat aaagaaacta
      421 ttctctaccc ctctttgtgt ttggataaac acatcatgga accaattatt aaattctcca
      481 atagacgcag cagaggcagg ccagatcata ggtatcaaga ttacaggaac aaaccataat
      541 ccgaggactt ttaaattcct gttggtgttc ctatatacaa ggaacgctac aagaggaatc
      601 atagtaaaaa cgggtaattt tgtaaaaata gctaatccaa taagataacc tgaaagcaaa
      661 accagcaaca tgtttttgtt cttgttgtat acattgctat tttttaaaaa aggctgtaga
      721 tataacgcaa acaatattga tgctaacaag aaaggtaact gaatagactc taataagacc
      781 catctagttt gccatattat tattggcatt accgcaaaaa taattgacgc aattagtgca
      841 gcggttctgt tgtaatgtcg ctcgcctatt ttgtatatga ggaaagtatc tatcacagca
      901 aatactccta ttaggattcg tggaactaga tagagcattt ctatggaatg taaatcccct
      961 acaacaggat gtaatgagct agggtagcca atcacaaaga atattccggc taacaaaagc
     1021 tgcgcaaagt aaggatgatc aaagagatac gcttccgtaa gacctagacc atttaaaatg
     1081 cgcaatcctc gggcgatgta gatattttca tcattggatg gcccgggtgg aaatccaata
     1141 ggatttaaaa gatgagtata tgcactcaat aaaaggggga tggctaggat tgcgaatgag
     1201 aatcttccga tacttagagc aaccattaac tgtctaaatg ctgccgcaat cttccataga
     1261 taaaaataat ttcgttatag ccaagaagaa ggttggttta caatattatc caaaatgcaa
     1321 tatcacaaag gtaacaaaag gaagaagaaa gtatgtgcca ttgcacattt tgttttagaa
     1381 tgaatttctg ttctgataga ttagctagta cctattacct caacattatg ccgtatagta
     1441 gtaatgcaaa tgaaaaacct ctagaagctg ctatctatct aaagcccagc atagttaatt
     1501 tgcgaaacgt cacatgcttt tctatggaac catcataagc gtctacaaat tcggtcttga
     1561 ctggttttgc taagaatata tatacagcgc aatttattgt aggatgttga aagttcataa
     1621 gggctatatt ttggtaaagc ggaaccaaaa ttatcgaggc ggactcgata ataacaacaa
     1681 caaccctcac tttcaatccg tctgatttcg agaatgttat tatggtatgg cgacaatatg
     1741 tacacggaca tagataacta atcatcgcct tttggagaaa aatgctgcaa aatatcttcc
     1801 tctgggttaa gagtgaaatt atttctcact atattcattc aaaatgacga aattctttaa
     1861 atttaatagc ttctcgcaat ttctgatgtc ttctgctcag gggttatttc aggagcttcc
     1921 tatcagacaa ttacgcacct ctctaaacgc tatacgcgag aataatcctg cagcgctgac
     1981 tgagctggca agttctatta aagaaaaagg tttgatgcag cctatagtgg tccgttcaaa
     2041 aaaaagctat tatgaaattg tcgcaggcca tagaagattt tatgcatgca aattcttgca
     2101 ctggacaaga gtaatgtgtc atgtagtcga agtagatgac aaagaagcat acgaattatc
     2161 gctaatagaa aacctacagc agaaatcaat gaatccaatt gaggaaggaa aagcattcag
     2221 acaatatgtg aagaaatttg gttggggagg cgagtcagat ctggcaagaa aaattggaaa
     2281 gagccaagag tatgtcagta gaagaataag gctccttgat ttgcctgaag agatgcaaca
     2341 ggaaattatg cggaaccgca taagtgtagg cttggcgcag gaattattgc ctctccataa
     2401 atcagaatca caagaagcca taaagtttat cgaagagaat cagctcaata gcaaagagac
     2461 acgagaacta gttagagtta tgagaagcaa aggcagtatg cgatttagtt taccttttgg
     2521 aaatagcaat agtagtgcaa gcgataacaa tgaacaatgt gaggaattga tctcttctac
     2581 caatccatac acgggaattt atgaaactgt gaacaagctg aatatcaaaa ctaacaatac
     2641 tatgagcaga aacgaaaaag aggaactagt gagacttgct aataatattt ttaagaaatc
     2701 agttctagcg ttacgtatct ctcttagaat atagacaatc agcttaacga ttttgaggat
     2761 attcttcaag aggaagagag tatgagagaa agggggttat taagagacta tgatgccgtt
     2821 gaaaatgatg gcatagacag tcgtaatagt aaatggcttc taagagaagt tattatgcaa
     2881 cacagactac aactgcataa ccaattagat attatgatga aggagcagca gaaaattact
     2941 caagttcttc agctagactt ttgttagaaa tatgaagaat tttattccat atgaaataca
     3001 accgtatgaa aagtttctgt cccgcttggc gtatatggca tattagaagt ttggctagat
     3061 aatgatagat ggctcatgtt aattttttca gaataattat gcctatcttc ttc
//
LOCUS       DATAAS010000245         3336 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3500704, whole genome shotgun sequence.
ACCESSION   DATAAS010000245 DATAAS010000000
VERSION     DATAAS010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3336
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3500704"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(436..927)
                     /locus_tag="VHF08_03920"
     CDS             complement(436..927)
                     /locus_tag="VHF08_03920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2067828.1"
                     /translation="MNESVKTIPEGYHSINPYLVVRDAARAIEFYKKAFGAEERFRMH
                     GPDGKNIMHADLKIGDSVFMLTEESKEMKALSPESVGGSSVCLYVYVKDVDSVFNQAV
                     SEGATVLDPVRDQFYGDRSGYLRDPFGHLWSLATHKKDLSPDELRKAGEAFFEEMSKT
                     KTS"
     gene            complement(1389..1781)
                     /locus_tag="VHF08_03925"
     CDS             complement(1389..1781)
                     /locus_tag="VHF08_03925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067829.1"
                     /translation="MARTFEKYLVTIMVFLICFVISVLNSEFTSIIYPATAQTTDTEN
                     MTAPMMESARFHLKAADELLMKGDTNAALDQINLAEIQLSLLNMGFQETSMNQTQAME
                     FIIGGSLSSTRMAANCIIDSQAMVRCMQ"
     gene            complement(2127..2909)
                     /locus_tag="VHF08_03930"
     CDS             complement(2127..2909)
                     /locus_tag="VHF08_03930"
                     /inference="COORDINATES: protein motif:HMM:NF018843.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1404 family protein"
                     /protein_id="HEX2067830.1"
                     /translation="MFTKKRHKSQTGHKTREFVFIAAFGILTVISLQGSLLEIFEQDL
                     ANHMVLEHTIFFIYGALSIIIAEIVLRFIISYEKTSRHLDHCKDNYIHKLKYSGVTTN
                     SRLIIGIDYWTRFLRMIFGLNNYGLVWVIIAGGLMIFWHIPSIFDFASLNESFHILQH
                     ISFIIVGAAGFLAIRSLGESFSIFLLFTITGTMGFAGLAFAILDNPIYSVYSVNSHHG
                     AGTYMLVSCMLIILIALPVYLIEKALFHIRIKAGKNTNDYRS"
BASE COUNT         1040 a          627 c          556 g         1113 t
ORIGIN      
        1 aattttgtta atgtaaaatt atacacatag catttaaaac atgaaggact acagtgaaaa
       61 ataaccaact agggcaaaca cctctgtgac agaacgaaag aaaaatttgt tttatctttt
      121 ttatttatac tcttgttgct aagccttgta tcttcttttg tagttcaacc acgtaacgta
      181 ttagattctt atctactgga gaatgtttat tcatgaaatg tttttcaaaa tcatcttcat
      241 cttctgatat atagggacat atagcacatt ctattctcat tcattctttc accccctgtg
      301 aaaataacac ttagattatt aaaccgagag gcctgaatca ttttcctctt atcctctgat
      361 tatctaatag tagatttcaa ccagtcaggc tagtctatta actatcatgt tttattccta
      421 aaaactactt ccccactacg atgtcttcgt tttcgacatt tcttcgaaaa atgcttctcc
      481 agccttcctg agttcgtctg gtgatagatc ctttttgtga gttgctagtg accacaaatg
      541 cccaaatgga tctcttaagt atccagaacg gtccccatag aattggtctc tgactggatc
      601 cagtactgta gcaccttcag aaacagcctg attaaatacg ctatctacat ctttaacgta
      661 aacatacaag caaactgaac ttccaccaac agattcagga gaaagagctt tcatctcttt
      721 agattcctct gttaacataa agacagaatc accaattttg agatccgcat gcattatatt
      781 cttaccatca ggaccgtgca tacgaaaacg ctcctcagca ccaaacgctt ttttataaaa
      841 ttctatcgcc ctcgctgcgt ctctcacgac tagataaggg ttgatcgaat ggtagccttc
      901 agggatcgtt tttacactct cgttcattat tatctaatta tctaattacc gtgataagtt
      961 ttataagtta cgataagact atgtcttctc ttcttacaag aaaggcatta acacaggtga
     1021 ggtggatgtt cttgaaatca atgtcatatt agggtaagta aatcttgatc atgtcggtat
     1081 ttttctctat tactacttta ttgaaaagaa atatttttta tcccagtata gcgggaatga
     1141 gtaagagaac tgaattatga gtcaggggct tgagggaaaa gttgcattgg tcgccggggc
     1201 aactcgagga gcgggacgag ggattgccgt gcaattaggt gccaaggtgc aattggatca
     1261 cgaggtacgg tccattgaat gaacatgacg gtaaatctca agcagggaat ctaagaacta
     1321 aatcataaaa tccgataaca ttattgtatt tgtggtagaa taaaataaaa tgggagattg
     1381 accgctcttt actgcataca acggaccatt gcctggctat caataataca gtttgccgcc
     1441 atcctcgtac ttgataagga acctcctatg ataaactcca tcgcttgggt ttgattcatt
     1501 gatgtttcct gaaagcccat gtttaataac gataactgta tctctgctag gtttatttga
     1561 tcaagcgctg catttgtatc tcctttcatt aataactcat cggcagcttt taaatgaaat
     1621 cttgctgatt ccatcatggg agctgtcata ttttccgtgt ctgtagtctg agccgtggct
     1681 ggataaatga tcgaagtaaa ctcactgttt aatactgata ttacaaagca aattaggaat
     1741 accataatag ttacaaggta tttttcgaaa gtcctagcca tatattatcc acataagata
     1801 gattgtggtt ataatatttt tctttgctat actattcaat cagcaactaa agattaattc
     1861 tacacaataa tagcagcggt cacggtctct tagggttaag gtaagtattt tatttattct
     1921 cggaatagaa agcaaattag atatcacatg gttggattat gacctcagcc atagaaccct
     1981 ggaactcatg tatattctat ctcttcctct tctttcactc catgctttct ttttagaaga
     2041 ttccgttatt gcattgatga attaattaac aattttttaa tttgtgtaaa aacttaaaat
     2101 cataatacta tagagttctc tatgatctat gatctataat cattagtatt ttttcccgct
     2161 ttaattctaa tatgaaacag tgctttttct attagatata ctggcagagc aattagaatt
     2221 atcagcatgc atgaaaccag catataagtt cctgcaccat gatgactatt aacagaatac
     2281 acgctataaa ttggattgtc taaaatggca aatgccagcc cagcaaagcc catcgttcct
     2341 gttatcgtga ataaaaggaa tatgctaaat gattccccaa gtgatcttat tgcaagaaag
     2401 ccagcagccc ccactattat aaatgaaata tgctgtaata tatgaaagga ttcatttaaa
     2461 gatgcaaaat caaatatgga aggaatatgc caaaagatca tgagaccacc agctattata
     2521 acccatacta gtccataatt atttaggcca aaaatcattc ttagaaacct ggtccaatag
     2581 tcgataccta ttattaatct cgaattggtg gttactccac tatatttcaa tttgtgaatg
     2641 taattatctt tgcaatggtc tagatgacgc gatgtctttt cataagatat gatgaacctc
     2701 agaacgattt ctgcaattat aatcgaaaga gcaccatata taaaaaatat agtatgttct
     2761 aaaaccatat ggttagccaa gtcttgttca aatatttcaa gtaaagatcc ttgaagagaa
     2821 attacagtaa gtattccaaa tgcggctatg aaaacaaatt ctctggtttt atggccagtt
     2881 tgagacttgt ggcgcttctt ggtgaacatt tatccctcct tttgttttcc tttctgtttt
     2941 tggttcttac tatgctcttt agtcatcttt gagtcaaatt acatacggga tacactagga
     3001 taactttttc acacatgata attctatata aaatatatgc aataacaatt cctattcgaa
     3061 ttgaataggc tatgcatgga tgacccaagg tttgaggatt ctgtcccccc tactatgctg
     3121 taggtgcgcc tttcctgtgg atgttcatgc accagcatag tgtaacattg tttattttta
     3181 tctaggatag tctctgttac ttattgtggt gcttgatatt atcctcttca cgtttctaca
     3241 gcttaaccct cttaatgata gcaaattacc gaccgaaaat gaaaaatata aggtaaaatc
     3301 taagttgcta ttataagata tcttagtaaa atatta
//
LOCUS       DATAAS010000246         2666 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3500886, whole genome shotgun sequence.
ACCESSION   DATAAS010000246 DATAAS010000000
VERSION     DATAAS010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2666)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2666)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2666
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3500886"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            87..1232
                     /locus_tag="VHF08_03935"
     CDS             87..1232
                     /locus_tag="VHF08_03935"
                     /inference="COORDINATES: protein motif:HMM:NF013565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEX2067831.1"
                     /translation="MKIFDSLSRKKSQFLFKDNIIKIFICGPTVYDYCHLGHARIFFF
                     YDLMTRYLLFKGLEPMVIVNLTDIDPKIATRANIQGLSPEALANKYIDELYTDLLSCG
                     ITTTFNFVRVSDYVKTAAKLVVSLLERKLAYSRNGNIYLDTTALRSYGKLSQLSVKDL
                     DNRRLDIGPGKLNPRDILIWNASDEFGQKYDDKILGSGIPWWHMQDTSVVMSNFNGIY
                     DIHGGAKDLIYPHHESHLAQLEVLTSAPSPIRYWTHVGLVNIKGNKMSNSEGNSIRIR
                     DVLKRYNSNTLRLYFFSQHYREPLTFSQSKLHKFENIDKTISNTMANVLSRRESNDGS
                     KLLSKFMKYIEDDFNTPAALQLLTDTARSHNAVNDLKNMVNIFGLRY"
     gene            1240..1974
                     /locus_tag="VHF08_03940"
     CDS             1240..1974
                     /locus_tag="VHF08_03940"
                     /inference="COORDINATES: protein motif:HMM:NF025054.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2067832.1"
                     /translation="MEFNEFYFCSLWTEHFRIRNCADILLNEKLTEDYFFNRLTNITC
                     SEIQTAIDEGVRISLKKGIDCYVYVPDDNRKLEDMLLGKGFTLLDSMSVLRCTTNSIE
                     YDNNTIDITKIDIDSIPIWVDVFCHAFDIQNWKNEVQRIIQSHFKELILLVSYLKNKS
                     NIPVGCTALFHRCSLIGLYCLGTVPGFRGQGIATKMVKVALEIVQQSGLDFIFLQAFA
                     NEGIIGFYNKLGFQTIYKKKVYAFHR"
BASE COUNT          929 a          422 c          458 g          857 t
ORIGIN      
        1 atcttattaa aggctacctt tatgtgatat ctcatagaga tagaatgtta tatatctaat
       61 atttgtctat ttaatgtatt tattaattga aaatctttga tagtctatcg agaaaaaaat
      121 cccaattcct gtttaaagac aatatcataa aaatctttat ttgtggaccc acagtttatg
      181 actattgtca tctcggacat gcacgtatat tctttttcta tgatctcatg actagatatc
      241 tgcttttcaa aggcttagag ccgatggtga ttgtcaacct gacagatatc gatccaaaga
      301 tagctacaag agcaaatatt caaggattgt caccagaagc tcttgcaaac aaatacattg
      361 atgaactata tacagattta ttatcctgcg gtatcacaac taccttcaat tttgttagag
      421 tttcagacta tgtaaagact gctgcaaaac tggttgtgag tttgcttgaa cgcaaattag
      481 cgtattctcg taatggaaac atctatcttg atacgactgc attaagatca tatggaaaat
      541 tatctcaatt gagtgtaaaa gacctagata acagaagact tgacattggg ccaggcaaac
      601 tcaatccgag ggacattcta atatggaatg caagcgacga atttggtcaa aagtatgacg
      661 ataagattct aggaagtgga attccttggt ggcatatgca agacacttcg gttgtgatgt
      721 caaatttcaa tggaatatat gatatacatg gtggtgcaaa ggatttaata tatccgcatc
      781 atgagtctca tcttgcacaa ctcgaagttc tgacgtccgc tccctctcct atacgatatt
      841 ggactcacgt aggattagtg aatataaagg gaaataagat gtcaaactca gaaggtaact
      901 caattaggat tcgagatgta ttgaaaagat ataattcaaa tacgttgaga ctttatttct
      961 tttcccaaca ttatagagaa cctttaacat tctcccaatc taaacttcat aaatttgaaa
     1021 atattgacaa gaccataagt aatacaatgg ctaatgtctt gtcccgcaga gaatcaaatg
     1081 atggttctaa actattgtct aagtttatga aatatatcga agatgatttc aatacaccag
     1141 cagccctaca gcttctgact gatacagcaa gatcacataa cgcagttaac gatctaaaaa
     1201 atatggtgaa tattttcgga ctccgatatt aaaagaagaa tggaatttaa cgaattttac
     1261 ttctgttctt tatggacaga gcacttcaga ataaggaatt gtgctgatat cttacttaac
     1321 gaaaaactta ctgaagacta ctttttcaat cgactaacca atataacttg cagcgagatc
     1381 caaactgcaa tagatgaagg tgttagaatc tctttaaaaa aaggaataga ttgttatgta
     1441 tatgtccctg acgacaatag aaaactggaa gatatgctat taggaaaagg attcacttta
     1501 ctagattcaa tgtcagtcct aagatgtaca acaaacagta ttgaatatga caataatact
     1561 attgacatta ccaaaattga tatagattca attccaattt gggtcgatgt attctgtcat
     1621 gcctttgata tacagaattg gaaaaatgaa gttcaaagaa taattcaatc acattttaaa
     1681 gaactcattt tgttggtatc atacctaaag aacaaaagca atattcctgt tggatgcaca
     1741 gcattattcc ataggtgcag tttaattggt ctgtattgtt taggaacagt acctggtttc
     1801 aggggtcaag ggatagcaac aaaaatggtt aaagtagctt tagaaatcgt gcaacaaagt
     1861 gggttagatt tcatttttct tcaggcattt gcgaatgaag gaataatagg tttttacaac
     1921 aaacttggtt ttcagacaat atataagaaa aaagtgtatg catttcatag ataaggatat
     1981 ataatgtcga tagaaaaaaa ttaagtgctc tcagcaggga tccaactcaa agttagatag
     2041 ataaactgct ttgacagagg ttagatctaa aaattacttt ctaattctgc aacatacaat
     2101 atgtttctct tatgttaatt tttacatcta ttaaagatga caagcaaata cgtattcatc
     2161 ttctcaagcc ttttgattat attaatgctt aaatctttta taaattaagt aggttattgc
     2221 catgcattcc atgcatccat gtatatcatc taaatgagag atagatagat agttcgagaa
     2281 tattccagta gaacttatct taaactacgt gtagtagatc tgcatataac agcacaggag
     2341 taagattgat gcaataagag gagtagattg gctcttgaca ggacacttct ggtctcttat
     2401 gagcatttct gcatattgct ttaagcatac tcttatacag atgccatttt caatctacag
     2461 caatttcata gagtgtgttg aagcaaaaat ggatagaaat tataattttt accgctcaaa
     2521 ccattggtga atagcatcac atgatttagc catatggatt catatcattt atggtaaatt
     2581 attgaattta aacatctaaa atttacttct ctggaaactt ccttagtgaa gattatcgat
     2641 aattttattg tagtctcgtc tatgat
//
LOCUS       DATAAS010000247        10503 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3501020, whole genome shotgun sequence.
ACCESSION   DATAAS010000247 DATAAS010000000
VERSION     DATAAS010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 10503)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10503)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10503
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3501020"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..504
                     /locus_tag="VHF08_03945"
     CDS             <1..504
                     /locus_tag="VHF08_03945"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013053.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismatase family cysteine hydrolase"
                     /protein_id="HEX2067833.1"
                     /translation="YFGIPISYTQAVRESSGIDLLTRSHKILPKSREERIKKKPICVR
                     ETWDAEIVDEIEPCEGDHVVIKRRDSAFYNTEIGVWLRSLNIDTLIFCGIDTSICVET
                     SLRDAFNIGYDVVLISDATASNNKKYYESTLENVKGYYGIVMDIKELSQSLPLSQLNS
                     LSNRNII"
     gene            complement(787..1893)
                     /locus_tag="VHF08_03950"
     CDS             complement(787..1893)
                     /locus_tag="VHF08_03950"
                     /inference="COORDINATES: protein motif:HMM:NF044723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067834.1"
                     /translation="MTAADKRHQEVIKKIKLIMRDVNDDLMVQKTMPVLDVPKVGYDN
                     TIWSDEKRMLTIGNKMIQVSPDSTKKIPTFAQYLVMANAIRRLLDEEMESTIRGMYYA
                     TLSTVGDEKNKQKFWNSQENSDDAIKALELLTGVPREEFSVTSKPKGMISGPITLRVG
                     GDIIDCNLGSRATSQLIPTNIRDVEIVNVKANFVMVVEKDTVLNNIRKSGFIQKYNAI
                     LMTGSGEPDRATRMMVRTLNEEWKKPVVIFADADPWGLGIALRYKIGSESLSYDSDRL
                     VTPNAKVLGMMFSDIYDYNIPEVARLTASDEDMNRANDMKKKPWLQDKQWQRELNLFL
                     KRKEKCELDAFFKHGFKYLAETYMPQKLREVGLI"
     gene            complement(1894..3879)
                     /locus_tag="VHF08_03955"
     CDS             complement(1894..3879)
                     /locus_tag="VHF08_03955"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF003218.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase VI subunit B"
                     /protein_id="HEX2067835.1"
                     /translation="MKKTSAELAQSQMKPEPTVIAIPNNGKGRVRYDKKAESEFFVDN
                     SALAGFTGERILYMAVRELIENSLDSCETNHILPNISLSLKLLDPENEMWLVSCQDNG
                     IGIPSDKVPVAVCSFLTSGKYVEKQQRGLFGVGLKMIAAFSTKDTDHPLKVWTKTQED
                     GSEYYFELRTDIGTNRPIVLLKRIIKTGESRIQDECGFRIEAVLRARLSPITKNKIYE
                     YISQTSIVNPYAILTFETDEGKVVFERRTEIMPHPAKEVLPHPGDMDLKTLKKAIIRF
                     MNQKTTLQGVLCNSFQKLSSEKAKEIITKANVDLKIADKYDEHELIKVVNICKQTKFQ
                     APNTEHLSPIGEEILIAGMTSEYTIVTNKENTNSGDQPQQQLSTKVLRPVLTGYSSRT
                     CVVNNRPTIVECGIAYGGDISSFKLHRFANKIPLLYDEGSDVAREVVSEVEINKMGIS
                     KKEVKEQFANPDSKSDRAVELLPIHIFFHICSTKIPYKTAGKESIASEGDLKRYMKAC
                     LADLYRKVSAQIRKELRIKEAESRLRLYKHYIPLIISAISESIKVDSEKLSEAFSQLA
                     EKHVRGESVDTPTDIKADKITGERIEEEADKTNENEILKQDSTKHVNYASREKKKKIK
                     NKTVSHKKKSKKYLKKNTGSKNRITLDTFNKPKARRI"
     gene            complement(3981..4139)
                     /locus_tag="VHF08_03960"
     CDS             complement(3981..4139)
                     /locus_tag="VHF08_03960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067836.1"
                     /translation="MVKLKDIVDGNIVGSGSDFIVIQKNKKRFLVEMKIIKIQELKNA
                     TTPYGSQF"
     gene            complement(4678..5364)
                     /locus_tag="VHF08_03965"
     CDS             complement(4678..5364)
                     /locus_tag="VHF08_03965"
                     /inference="COORDINATES: protein motif:HMM:NF018656.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--phosphoribosylaminoimidazolecarboxamide
                     ligase"
                     /protein_id="HEX2067837.1"
                     /translation="MNEALLTTPRYVESKDDIERLCIVKLHGAAGGRGYFLAWNRQSF
                     EEAAKKLIDQGVITNEDDLYIQEYVNGVPTYLQFFYSPVTKILEFMGVDRRYESDVDG
                     MGRIPAKQQLGIELQPSYNVIGNIPLVLRESLLEEVYAMGERFVKTARRLVPPGMTGP
                     FCIEGVYDREGKFTAFEFSARIVAGTNLYLDGSPYSGLIFDKPMSMGRRIAHEIKIAS
                     NLGKINDILT"
     gene            complement(5344..5739)
                     /locus_tag="VHF08_03970"
                     /pseudo
     CDS             complement(5344..5739)
                     /locus_tag="VHF08_03970"
                     /inference="COORDINATES: protein motif:HMM:NF018548.4"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016879 - ligase activity, forming
                     carbon-nitrogen bonds [Evidence IEA];
                     GO_process: GO:0006188 - IMP biosynthetic process
                     [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1246 domain-containing protein"
     gene            complement(6148..6324)
                     /locus_tag="VHF08_03975"
     CDS             complement(6148..6324)
                     /locus_tag="VHF08_03975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067838.1"
                     /translation="MQRKIIEIIQTLKLAKKTSKDDYFTHLRLVLLGMAVVGGIAFVI
                     KLIAEFITSTGGTT"
     gene            complement(6579..7049)
                     /locus_tag="VHF08_03980"
     CDS             complement(6579..7049)
                     /locus_tag="VHF08_03980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX2067839.1"
                     /translation="MQRFDELDMRILSELTKDASISVPQLSKKLNVNASVLYSRIKRL
                     GKRSLIKKFTVIINEGMLGINVKATVGINRDPKLKEPIHSELLRIPEVRLLSEVTGRF
                     DMIVNVNARTLEELHNIIIERIGKIEGIQNTETFVEMQRTEKEPVYAVQPTLSR"
     gene            7273..7776
                     /locus_tag="VHF08_03985"
     CDS             7273..7776
                     /locus_tag="VHF08_03985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067840.1"
                     /translation="MFGRGRIKPGEYVFVVQSDQNYNKLIIGMVQSANGNKIQVKGSY
                     IRPIGLIERVKRGHAGDRPREVLNNPDPNNCIFMLIDRVETGSFNQEIDQQTSKIIWI
                     NEKRFFVLDGWIRENLPDMFADVLRADTEQERLHARTMLLEKMNSLYEKDLKDHLYAV
                     ARSTKVL"
     gene            7825..8142
                     /gene="rpl12p"
                     /locus_tag="VHF08_03990"
     CDS             7825..8142
                     /gene="rpl12p"
                     /locus_tag="VHF08_03990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein P1"
                     /protein_id="HEX2067841.1"
                     /translation="MEYVYAALLLHKLKQNITEDNIANVIKATGVTPDDVRVKALVAA
                     LSEVNIEEALKAAPLASTAAVGTVPSSASAPSAAGTTTPEEEKKEEKKEEEALEGLSS
                     LFG"
     gene            complement(8293..9183)
                     /locus_tag="VHF08_03995"
     CDS             complement(8293..9183)
                     /locus_tag="VHF08_03995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEX2067842.1"
                     /translation="MVSDIKITERKSYPKKKRMMYHELQELPKNYDVIALSKMTKVRA
                     TQLMMIRKKLRNDLKILIIKNKVAQRAFEKVKNVPGLESLSKELEGQCALIFTQISPF
                     KLNLIFDQNKVFLPAKGGDIASKEISIPAGNTGITPGPVLSEFKEANVPTKIDQGSIW
                     VNRDTVIARKGEVISQKLASLMSKLDIKPIEAGIALNFAITAGLLLRESDLKINLEQY
                     RNEMSRSFQEALALATEAGYLTSETVIPLLLKTHQKAVALASESAYISQDTVALVLPR
                     ALSKAYAVANEAKKRGYEPH"
     gene            complement(9188..9868)
                     /locus_tag="VHF08_04000"
     CDS             complement(9188..9868)
                     /locus_tag="VHF08_04000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEX2067843.1"
                     /translation="MVRDSRLRDLIKLARDGAAKRNFNQSVELTLVLKDIDVKKGFNL
                     NEVVNLPNKPARKASICVIASGDMGTRARRTEIDRVIEPEELDRLGTNKREARKVVKA
                     HDFFVSDTAYMATVGRSLGQFLGPKGKMPTPLPYGAPIEAIATRFRGSVRVRAKNQLN
                     VSAKIGDEKMDDDQLATNASAVISAIEKKLPQGEKNIRNTLVKFTMGKPAKLTTLKEE
                     EDPRKKAE"
     gene            complement(9988..10078)
                     /locus_tag="VHF08_04005"
     tRNA            complement(join(9988..10026,10040..10078))
                     /locus_tag="VHF08_04005"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(10041..10043),aa:Arg,seq:tct)
BASE COUNT         3157 a         1952 c         1714 g         3680 t
ORIGIN      
        1 tattttggta ttccaatttc ctatactcaa gcagtcaggg aatcttctgg aattgatctt
       61 ttaactagga gtcataaaat tttgccaaaa tctagagaag agagaataaa gaagaagcct
      121 atctgtgtga gagaaacatg ggacgcagaa atagtagatg aaattgagcc ctgtgaaggt
      181 gatcatgtag tcatcaagag aagggattca gccttttaca acacagagat aggagtatgg
      241 ctcaggagtc ttaacataga tacgcttatc ttttgtggaa tagatacttc aatatgtgta
      301 gagacttctt taagagatgc ttttaatatt gggtatgatg tagtccttat ttcagacgca
      361 acagcatcta ataataagaa atattatgaa tcaacattgg agaatgtgaa aggttactat
      421 ggaatagtaa tggatataaa agagttaagc caatctctgc cactatccca acttaattca
      481 ctaagtaatc gaaacattat ttaatattgg ataaagagac aacataaaac aacaaatcat
      541 gcataaggaa ttaagggcag tctctttata tttacctcat aacttctctt gctgctgtct
      601 attataactg tcatctcaga ctatctacaa tcctatactc aatcaagaaa acttatctgt
      661 cataaattgt aagttggatg agtattacta ataaacatct atcattagaa ttagctaaat
      721 tgtttaactt ataaacacat aattaaacaa aatgtaaatt tgaattctaa atatgaagca
      781 ctgatattag atcaatccta cttctcttaa tttttgtggc atatatgttt ctgcaaggta
      841 tttgaatcca tgcttgaaaa atgcatccag ttcacatttt tctttacgtt tcaagaatag
      901 atttaattct ctctgccatt gtttgtcctg tagccatggc ttctttttca tatcgttagc
      961 tctattcata tcttcatcag aggctgtcaa ccttgccact tcaggaatat tgtagtcata
     1021 gatatcagaa aacatcatcc caagcacttt tgcgtttggg gtgactaatc tgtcactatc
     1081 ataactgagt gattcgctcc ctattttgta acgcaatgca ataccaaggc cccatgggtc
     1141 agcatcagca aaaattacaa caggtttttt ccattcttca ttgagtgtcc tgaccatcat
     1201 tctcgtggct ctatccggct ctccagaacc tgtcattaaa attgcattat acttttgtat
     1261 aaacccagat tttcggatat tattcagaac tgtatctttt tccacgacca ttacaaagtt
     1321 tgcctttaca ttaacgattt cgacgtcacg aatattagta ggaattaatt gtgatgttgc
     1381 tctgcttcca agattacaat cgataatatc gcctcctacg cgaagtgtaa taggtccaga
     1441 tatcatgcct ttaggtttag atgtaactga aaattcttcc cttggaactc ctgtcagtaa
     1501 ctctaatgct ttgatggcat catctgaatt ttcttgtgaa ttccaaaact tttgtttatt
     1561 cttctcgtct cctactgtgc tgagcgtagc ataatacata cccctgattg tactctccat
     1621 ctcctcatca agtagccttc tgatagcgtt cgccatgact agatactgtg caaaagtagg
     1681 aatttttttt gtactatctg ggctgacttg aatcatttta tttcctatag taagcattcg
     1741 cttctcgtcg gaccaaattg tattatcata accaaccttt ggaacatcta aaactggcat
     1801 tgttttttga accattagat cgtcattaac atctctcatg attaacttga ttttcttgat
     1861 tacctcttga tggcgtttgt ctgctgcagt caattatatt ctcctcgcct tgggtttatt
     1921 gaaagtatct aaagtgattc gattttttga tcctgtattc tttttaagat actttttaga
     1981 ctttttctta tgacttactg ttttgttttt tattttcttt ttcttttccc ttgaagcata
     2041 attcacatgt ttcgtcgagt cttgttttaa gatttcattt tcatttgtct tgtctgcctc
     2101 ttcctcaatc ctctctcccg ttattttatc tgcttttatg tctgttggag tatccacact
     2161 ctctcccctg acatgttttt ctgcaagctg ggaaaatgcc tctgaaagtt tctctgaatc
     2221 caccttaatt gattcggaga ttgcactaat gatcaaagga atataatgct tgtaaagtct
     2281 tagtcggctt tcagcctctt ttattcttaa ctctttgcgg atctgagcac tcacctttcg
     2341 atataaatca gctaaacatg ctttcatata tcgctttaaa tcaccttctg atgcaatact
     2401 ttctttgccc gctgttttgt atggaatttt agttgaacaa atatggaaaa aaatatgaat
     2461 tggaagtaat tctacggcgc ggtctgactt ggaatctgga tttgcaaatt gctcttttac
     2521 ttcctttttc gaaattccca ttttgttaat ttcaacctct gaaaccactt ctcttgcaac
     2581 atcagaacct tcatcatata acagaggaat tttatttgca aacctatgca atttaaatga
     2641 gcttatgtca cctccgtaag cgattccaca ttcaactatg gtcggtcgat tgttaactac
     2701 acacgttctt gatgaatatc ctgtaagaac aggtcttagt acctttgtcg ataactgctg
     2761 ctgaggctga tcacctgaat tagtgttttc tttgtttgta acgatggtat actctgaagt
     2821 cattccagca attagaattt cttcgcctat aggactaaga tgctcagtat taggcgcctg
     2881 aaacttagtc tgtttacata tattaactac tttaattaat tcatgctcat catatttatc
     2941 agcaatcttg agatccacat ttgctttggt tatgatctct ttagcttttt cactagaaag
     3001 cttttggaag gaattgcata atacaccttg caaagttgtc ttttgattca taaatctgat
     3061 gattgccttt ttcagagttt tcaaatccat atcgccagga tgaggcaaca cttcctttgc
     3121 tggatgtggc attatctctg ttcttctttc aaagacaact ttaccttcat cagtctcaaa
     3181 tgtcaaaata gcatatggat ttacaatact agtctgacta atgtactcat aaatcttatt
     3241 ctttgtaatg ggcgataatc gagcacgtaa tacagcttcg attctaaaac cacattcatc
     3301 ttgaatccga ctctcgcctg ttttaattat cctctttaaa agaacaattg gcctatttgt
     3361 tccaatatct gtcctaagtt caaagtaata ttctgatcca tcctcttgtg tttttgtcca
     3421 tacctttaga ggatgatctg tatccttagt agaaaaggca gcgatcattt ttagacccac
     3481 accaaacagg ccgcgctgct gcttttcgac atatttacca gatgtcaaaa aagaacagac
     3541 ggctaccggg actttatctg agggaattcc gataccatta tcctgacaac taacaagcca
     3601 catctcattt tccggatcta gtaactttaa tgataatgaa atatttggta aaatatgatt
     3661 ggtttcacaa gagtcaagag aattttcaat taactcgcgg acagccatat agagaatacg
     3721 ctctccagta aagccagcaa gtgcagaatt atcgacaaag aattctgatt cagctttttt
     3781 atcataacgg actcttcctt ttccgttatt tggaatagca attacggtgg gttctggctt
     3841 catttgtgat tgtgcaagtt cagcagaagt ctttttcaaa cgttgatgtt agtttgataa
     3901 ctcaatttaa ctttttacaa gattcaattt aactttttac gccagatttg ttgactagaa
     3961 agataataat taaattacta tcaaaactgt gagccatatg gggtagtagc attctttagc
     4021 tcttgtattt tgataatctt catctcgaca agaaatcttt tcttattttt ttgtattact
     4081 ataaagtcag atccggatcc gacaatattt ccgtcaacta tatctttaag cttaaccaca
     4141 tgtcaaatgt ataaagaatc cttaagagtt ttactgctct cagaagtatt gttatatgat
     4201 aaatggtggt ctagacggag ttttctcttc tcatgcatac tatgaaaaga tcagaaaaag
     4261 tctttgtgca acaataattc tgataagcac tttatttctt acttccacaa gaaagaaaaa
     4321 tagatgagaa aatgaatttg aaagatagta gcagtaaaat gcaagcccta tgggaaatag
     4381 tatgacaatt taacaagaga aaaatattta tccattgaga tgacgctcag acaaaatctt
     4441 atcttgacta tcatctttga atatggatag tttacttttc tattctaata gtacctagat
     4501 aaaatttata aagtaagtat ccttgtaact tatctgttaa aatcaataat gtaataaaat
     4561 agaaaattgg tgatatttga aaagtatctt ctaaatcgtc tgcatactta taatatatac
     4621 aatggttttc aatggcataa tcttattctg attctttttg ataataatta ggaagattta
     4681 tgttaaaata tcattgatct tccctagatt actggctatc ttgatctcgt gagctattct
     4741 cctgcccata ctcataggtt tatcaaatat tagtcctgaa tatggcgaac catcaagata
     4801 tagatttgtt cctgcgacga tccttgctga aaactcgaat gcagtgaatt ttccttctct
     4861 atcgtataca ccctcaatac aaaaagggcc tgtcattcct ggtggaacaa gacgtcttgc
     4921 tgttttgaca aatctttctc ccatagcata cacttcttct aacagcgatt ctcttagaac
     4981 aagaggaata tttcctatta cgttatacga tggttgcaat tcaatgccta gttgttgttt
     5041 agcaggtatt ctacccatac catcaacatc cgactcatat cttctgtcta cacccataaa
     5101 ttcaagtatt tttgtaactg gagaataaaa aaattgtagg taggttggaa cgccatttac
     5161 atattcttgt atatataaat cgtcttcatt agtaataact ccttgatcta ttaatttctt
     5221 tgcagcttct tcgaaacttt gtctattcca ggctaggaaa tatccccgac caccagccgc
     5281 tccgtgtagt ttgacaatac atagtctttc aatatcatcc tttgattcta catatcttgg
     5341 tgtagtcaat agtgcttcgt tcatcagttg ttgttttagg tttctatcgg cttcccattt
     5401 tatgatccat ttatttccaa aaaaaggaat agtgatcttt tcaatctctt ctctgctcat
     5461 ataagctatc attgttccat gcggaataat aatagaatta gtttttctga gatgttgttg
     5521 acatgattaa tctgagattt cattaaattt gtcaactaat atcatatcat ctatgaagtt
     5581 aaatctctta taaagtccaa gacgtctttt ttcacatatt agcaatgtat taaatccttc
     5641 atctttcgca ccttttaata cctggagcga acaatgtgac ccgagagtag ctatagaata
     5701 tctttttttt tcgacttttt taccactatg tacattcact atatgacgtg tgattaaaat
     5761 acttcggaat agtaccgttt tagataatgt cttttcgatt ggtatattct gtgaggataa
     5821 taataaaaaa acgtcattat tcttgttgtc gtgacctata aaaattgtat tgtgaaatca
     5881 attaatattg ctcttcaaac aagttagcta ctctatttac attgggatat gaatttacat
     5941 ggataaacaa aaaagtgtat atgttcatat ttttgctttt tataataaag gcttttgaat
     6001 tactatatta aattatataa atatcgagga gagcaaaaca gataaagtga tatatattaa
     6061 aactctatac aaatgagatc ttgtctttta tcagaggatt tgatgatcta gatgttgcca
     6121 ctaccttgta agaaatcgac taacagatta ggttgttcca ccagtggaag ttatgaattc
     6181 tgcaattaac ttgattacaa aagctattcc tcctacaaca gccataccta gaagtactag
     6241 acgaaggtgt gtgaaatagt catctttgct tgtcttctta gctaatttca atgtctgaat
     6301 gatttctata atttttcgct gcataaatgc caaaagactc gcttcaaatt gttgaatgca
     6361 ttatttgaac ctactgaatt aaagttatta tcagtttatg ctacaataat gttaatattg
     6421 cattgatgcg gttgcataat taaactttat atttagaaaa atgctaaaat atcatattta
     6481 aatcatgcgt gataatataa ctctagccgc ttgatttgtt cagcataaca gaataaaaat
     6541 attacatata ttctaaaaag actatggacc agttgttcct atctagataa tgttggctga
     6601 actgcataaa caggctcctt ctccgttctc tgcatttcaa caaaagtttc ggtattctga
     6661 attccttcga ttttaccgat cctctcaatt attatattgt gaagctcttc cagggttcgc
     6721 gcatttacat taacaatcat atcgaatctg cctgtgactt ctgacaataa cctaacttct
     6781 ggtatcctta ataattccga atggattggc tcttttagtt tgggatctct attaataccg
     6841 acagtcgcct ttacattaat tccgagcata ccttcattga tgataactgt aaatttcttt
     6901 ataagacttc gttttccaag acgctttatt ctgctataaa gaacagatgc atttacattc
     6961 aactttttac tcagttgcgg tactgaaata cttgcatctt tagttagttc agataatatc
     7021 ctcatatcta attcatcgaa tcgttgcaaa ttttatccta tttagagttc gtggcataga
     7081 ttaataaatg taattttaaa tctttcattg attagaagaa ataataataa tttctgaacc
     7141 ccctaagcca ttagcagcgt gtactctatt tcatcgatac tttaatttta tttcttcagc
     7201 agaggtgcta cacgctgata aatataatat aaatagcaaa tattatataa tttatgatag
     7261 gatcatgaac agatgtttgg cagaggtcga ataaagccag gtgagtatgt ttttgtggtc
     7321 caaagtgatc agaactataa taaacttatc attggtatgg ttcagtctgc taacggaaac
     7381 aaaattcaag taaagggctc atatattcgt cctataggcc taattgaacg tgtcaaaaga
     7441 ggtcacgcgg gagatagacc tagagaagtt ctcaataacc ctgatccgaa caattgcatc
     7501 tttatgctaa tagacagggt tgaaacaggt agcttcaatc aagaaattga ccaacagaca
     7561 agtaagataa tatggataaa cgaaaaacgt ttctttgttt tagatggttg gataagagaa
     7621 aatcttcccg acatgtttgc agatgtgcta agagcagata cagagcaaga gcgtttgcac
     7681 gcacgaacaa tgcttttgga aaaaatgaac tcactatacg aaaaagacct taaagatcat
     7741 ctttatgctg tagcaagaag tacaaaagta ctatagacgt ttgaaagttt tatattatgg
     7801 taaatattag acaatctttt gagtatggaa tacgtatatg ctgctttatt attgcataag
     7861 ttaaaacaaa atataacaga agataatatt gcgaatgtta taaaggccac tggagttact
     7921 ccggatgatg ttagggtaaa agctctagtt gcagctttaa gtgaagtaaa tatcgaagaa
     7981 gcccttaagg cagcaccact tgcatcaacc gctgctgtag gcacggtacc ctcttcagca
     8041 tcagcacctt cggctgccgg tacaacaacg cctgaggaag agaagaaaga agagaagaaa
     8101 gaagaagagg cattggaagg actctcatca ctctttggat aatctttcac tacttcattt
     8161 gttaaaactt gttgttatga attcttatgt atctgcaata aatttctcaa tcaaaaaatc
     8221 tgttaagaat ttatagcaac caatgtgtct caaaaatatg atgtacaact tctttttgtg
     8281 gatttgctaa attcagtggg gttcatatcc cctttttttt gcttcgtttg ccactgcgta
     8341 ggctttagaa agagccctag gaagaacaag tgctacagta tcctgtgaaa tatacgcaga
     8401 ttcagaagct agcgctacgg ccttctgatg agtttttagc agcaacggta tgaccgtttc
     8461 tgatgtaaga tatcccgctt ctgttgctaa tgcaagagct tcttgaaatg accttgacat
     8521 ttcattacga tattgctcca aatttatttt tagatcggat tcccttaata gcaaccctgc
     8581 agtaatagca aagttaagag caatacctgc ttcaatcggt ttaatatcaa gcttgctcat
     8641 taaggatgca agtttttgtg agataacctc acctttccta gcgattactg tgtctctgtt
     8701 tacccatata cttccctgat ctatctttgt tggaacattt gcctctttga actctgagag
     8761 aactgggcct ggagtaattc ccgtattgcc tgccggaatt gatatttcct tagaggcaat
     8821 gtctcctccc ttggctggta gaaatacttt attctggtca aatatcagat tcaatttgaa
     8881 cgggcttatt tgagtaaata tcaatgcaca ctgtccttct agttccttgc ttagactttc
     8941 taatccaggt acattcttta ctttttcgaa tgctctttgt gcaaccttat tcttaattat
     9001 cagaatcttt aggtcatttc ttaatttttt tcgaatcatc attaactggg tagcccgaac
     9061 tttggtcatc tttgaaagtg caattacatc gtagttctta ggaagttctt gaagttcatg
     9121 gtacatcata cgtttctttt tgggatagct ttttctctca gttattttaa tatcagatac
     9181 cattctatca ttcagccttc tttctcgggt cttcctcttc ttttaatgtt gtcagtttgg
     9241 ctggcttacc catagtaaac tttaccaatg tgttccgaat atttttttct ccttgtggta
     9301 gttttttctc gatggctgat attacagcac tagcatttgt tgctagttgg tcatcatcca
     9361 ttttttcgtc tccaattttg gcagatacat ttaactgatt ctttgctctt acacgaacgg
     9421 aacctctaaa acgagttgca atagcttcta tcggtgcacc atatggcagt ggtgttggca
     9481 tttttccttt aggacctaaa aattgtccca atgagcgacc aaccgttgcc atatatgcag
     9541 tgtcagagac aaaaaaatca tgtgctttta ccactttgcg cgcttctctc ttatttgtgc
     9601 ctaatctgtc tagttcttct ggttctatta ccctgtcaat ctcagttctt cgagcacgtg
     9661 tacccatgtc gccagaagca ataacgcaga tgcttgcttt acgagcaggc ttgtttggta
     9721 aatttactac ctcattgaga ttaaaacctt ttttcacatc tatatctttc agtacgagtg
     9781 ttaattcaac tgattgattg aagttgcgct tcgccgctcc gtctcgcgcc agctttatta
     9841 ggtctctaag tctactatca cgtaccatcc caatacaaac cgtcaatgca tagaaagcca
     9901 cttaaaatcg tttagaaaac gtacaagaaa aatctattta tctgaattgt atagcaaata
     9961 acacaatatt aaagacggtt ttaaaaatgg cgggcccggt gggcttcgat cccacgactt
    10021 ccggctctcc ccaggaattt agaaggcagg cgctctatcc atgctgagct acgagcccgc
    10081 ttcaagagac tcttccacta tgtggattat gagctaacag ctggcatggt taggagaatt
    10141 tgaattatcc tttataaaat gtttagtgtt ggaaaataat ttatatgaaa ttaagctgga
    10201 tgtctttaac atctatagta tattgtactt tgaatggcta ctagaactta tatttatttg
    10261 gatataatat gtataagata tattctctaa tcgaaatcta ataataagtt atgacaagca
    10321 catgataaga ccaaagccta tagaaacaac atatctcaat aaaatgttat taatcttatt
    10381 ctaagcatta ttcttatttt atcatagatg cgtagaatta aagacattta aggttagtat
    10441 cctttctaat aaagtataat aacatgaata aatatacaag taataaccta ctctctaaag
    10501 tca
//
LOCUS       DATAAS010000248         2572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1426944, whole genome shotgun sequence.
ACCESSION   DATAAS010000248 DATAAS010000000
VERSION     DATAAS010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2572
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1426944"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            373..1965
                     /gene="pckA"
                     /locus_tag="VHF08_04010"
     CDS             373..1965
                     /gene="pckA"
                     /locus_tag="VHF08_04010"
                     /EC_number="4.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004612 - phosphoenolpyruvate
                     carboxykinase (ATP) activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate carboxykinase (ATP)"
                     /protein_id="HEX2067844.1"
                     /translation="MSDKSRARYLMQLEKMDIRLGKLYRNLPVPLLIEIAILRREGNL
                     SSTGAFSVKTGKFTGRSPDDKYIVDDEYTHNSVHWGKVNHSISEENFEKIFTRMKKYV
                     EGKEFFIFDGFVGADNKTRLPIRVITDKAWHNLFATQIFIRPTSREIESHEPEFTLLS
                     VNDFKAIPELEGTRTETFIIINFKKKIVLIGSTSYAGEIKKAMFSVMNYILPTKGIFP
                     MHCSANVGKSGDSALFFGLSGTGKTTLSADHNRHLVGDDEHGWSDEGIFNFEGGCYAK
                     CINLKKENERQIWDAIRFGSVMENVILKNHIREPDFTDGSLTENTRVAYPLDFIPGAI
                     IPSIASHPTVIIFLTADAFGVMPPIAKLTKEGAMYHFMSGYTSKLAGTERGITEPKET
                     FSQCFGAPFMPLHAMEYAKMLGQKISQHNTRVYLINTGWSGGPYGVGKRMDLKYTRAM
                     VTAALNGELEKVRFKHDDIFNLDIPTSCPGVPSGILDPRNTWSDKNKYDLSANRLAEL
                     FVKNFQKFGVISKEIRNAGPKL"
     gene            complement(2002..2153)
                     /locus_tag="VHF08_04015"
     tRNA            complement(join(2002..2039,2059..2074,2099..2110,
                     2144..2153))
                     /locus_tag="VHF08_04015"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2060..2062),aa:Gln,seq:ctg)
BASE COUNT          893 a          431 c          454 g          794 t
ORIGIN      
        1 gttctagtaa taatatgtct ctattgttgt agtattggtc tctaacaata tagctaaaga
       61 tggcgttata tagactctaa ggtaaatatc ttctggtgag gatacttaat ctcaacagaa
      121 cataaaaaca atgttataga agatgatcaa tgctctgtta aaacaatgat agagaattat
      181 caaatctatt tcttttgtta tttttaaaaa tgtatagatc agtatagtta tggccccata
      241 gtaagcaata aaataattga atcccatcct attgcaagtg atgtactaaa atatatcgtg
      301 acataggaac aatctcttct aaaatctacg gcatatcaat taaatataca agtatattgt
      361 taaatcatgc taatgagtga caaatcaagg gcgagatatc taatgcaact tgaaaaaatg
      421 gatattagac tcggtaaact atatcgaaac ctaccagtcc ctttattaat agaaattgcg
      481 atcttgagaa gagaaggaaa tctttcttct actggtgcgt tttctgtaaa aaccggcaag
      541 tttactggca gatcaccaga tgataaatat attgttgacg atgagtatac tcataattct
      601 gtccactggg gcaaggtaaa ccattcaatc tcagaagaaa atttcgaaaa gattttcacc
      661 agaatgaaaa aatatgtcga aggcaaagag ttctttattt ttgatggttt tgttggagca
      721 gataataaaa cacgattacc cataagagta attaccgata aagcatggca taatcttttt
      781 gcaactcaaa tttttattcg tcctacttca agagaaatcg aaagtcatga acccgaattc
      841 actctcttat cggtaaatga ctttaaagca atacctgaac tagaaggaac aagaaccgag
      901 acattcatta ttataaactt caagaaaaag attgttctga taggatcaac atcgtatgct
      961 ggtgaaatta agaaagctat gttttctgta atgaactata ttttacctac taaaggcatt
     1021 tttcctatgc actgctcagc taatgtcggc aaaagtggtg acagtgcatt gttctttggg
     1081 ttatctggta ctggaaagac aaccctctca gctgatcata atagacatct tgttggcgat
     1141 gacgagcacg gctggtctga cgagggaatt tttaactttg aaggtggttg ttatgcaaaa
     1201 tgcataaatc tgaaaaaaga aaatgaacga caaatttggg atgccataag atttggttca
     1261 gtaatggaaa atgttattct taagaatcat atacgagagc ctgattttac tgatggaagc
     1321 cttacagaaa atactcgagt agcctatcct cttgacttta tacctggtgc aataatccca
     1381 agtattgcta gtcatccaac tgttatcatt tttctaactg cagacgcttt tggagtaatg
     1441 cccccaattg ccaaattgac aaaagaaggc gcaatgtatc actttatgtc aggctatact
     1501 agcaaattgg cgggaacaga aagaggaatc acggaaccga aagaaacatt ctcgcaatgt
     1561 ttcggtgctc catttatgcc attgcatgct atggaatatg caaagatgct tgggcaaaag
     1621 atctcccaac ataatactag agtatatcta atcaatacag gttggtctgg cgggccttat
     1681 ggggttggca agagaatgga tctcaaatat actagagcga tggtaacagc cgcattgaat
     1741 ggagaattag aaaaagtacg ctttaaacat gatgatattt ttaaccttga tattcctact
     1801 tcatgtccag gagtgccatc tggaattctt gacccacgca acacatggtc tgataaaaac
     1861 aaatatgact tgtctgccaa tagacttgca gaattgtttg tcaagaactt tcaaaagttc
     1921 ggagtgatat ctaaggaaat tcgaaatgca ggcccaaaat tatgagtttg caaaatggca
     1981 ttaaaataat aaacaagaaa atggtagccc ggagcagatt cgaactgctg tctccaggtt
     2041 tcttttctct ttatagatcc agagcctgaa atccatagcc ctaccttgga gaagtagatt
     2101 ggccactaga ttcggcacct gattaaatta aataattcag gttcgaccgg gcttcatata
     2161 cacaggctac tgtaataatc tattctagac tgatatttga ttttatcgtt attttagtta
     2221 gcattagtat tcattctatt ctagctaaac ttctcaagaa ctaaacaaca tatgtgatta
     2281 ctacaacttt atatttctat caaagaataa aagtaataat tcctacagaa aagcatcatt
     2341 tagatactta atttggatat ttatctaata taatatatac cagctgagtc atattactac
     2401 ttttcaatat atattatctt tcaaagtctt aatgccttta gaaccgaaat gtctttgagt
     2461 gccaatattt agatatcatc atttaaaata caaatagaga cgagaactat attctaaaac
     2521 caagttgtta ttaagagcca catttaaata attttttatt tcaaaaagcg at
//
LOCUS       DATAAS010000249         1544 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3501524, whole genome shotgun sequence.
ACCESSION   DATAAS010000249 DATAAS010000000
VERSION     DATAAS010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1544)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1544)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1544
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3501524"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..201)
                     /locus_tag="VHF08_04020"
     CDS             complement(<1..201)
                     /locus_tag="VHF08_04020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEX2067845.1"
                     /translation="MRMLRQGKVKDLYILDNGNILFHFTDRVSAFDIKMVNSIPRKGE
                     VLCRFAKFWFDSLDTKNHMVRIH"
     gene            399..1238
                     /gene="purC"
                     /locus_tag="VHF08_04025"
     CDS             399..1238
                     /gene="purC"
                     /locus_tag="VHF08_04025"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEX2067846.1"
                     /translation="MRMLRKGKVKDLYILDNGNILFHFTDRVSAFDIKMVNSIPRKGE
                     VLCRFAKFWFDSLDTKNHMVRIHNSDKMEVKRMKMIPLECIVRGYFYGSLEERYHKGI
                     AHDFFSTSFVPIKASKLPEPIFDPTTKSEEHDIPKTKEEIVSSGLLSKEDYEYVKETS
                     LMLYKKMSSIVEKSGFIIADVKFEFGRDLRTGEILLGDSLGPDEYRLWLRCHYMPGKS
                     QESYDKQLLRDWLVKIGFKETIMEYSKKGEKPPPPAIPKEIAIELSKRYIFAYEKISG
                     KKF"
     gene            complement(1419..>1544)
                     /locus_tag="VHF08_04030"
     CDS             complement(1419..>1544)
                     /locus_tag="VHF08_04030"
                     /inference="COORDINATES: protein motif:HMM:NF015960.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF371 domain-containing protein"
                     /protein_id="HEX2067847.1"
                     /translation="NFACSRTLCLNTDKASLDIPREIVRLLQNPKTRAILNINIE"
BASE COUNT          550 a          241 c          264 g          489 t
ORIGIN      
        1 gtgaatccta accatatgat tttttgtatc gagagagtcg aaccagaatt ttgcaaatct
       61 acaaagaact tcaccttttc tcggaataga attaaccatc tttatatcaa atgcagatac
      121 acgatcagtg aaatgaaata aaatattgcc attatctagt atgtacaaat cttttacttt
      181 gccttgacga agcatcctca tttaaatttc ttaattggct gttaaataaa aattcttttt
      241 cctatcgtca agatgatatc tgatattctt gaaatcctag attgaaggtc atggtgggat
      301 tcgaacccac gaccttcaat cgagatttcg aggatctcat atatcatttt gacaatagga
      361 aaaagaattt ttatttaaca gccaattaag gaatttaaat gaggatgctt cgtaagggca
      421 aagtaaaaga tttgtacata ttagataatg gcaatatttt atttcatttc actgatcgtg
      481 tatctgcgtt tgatataaag atggttaatt ctattccaag aaaaggcgaa gttctttgta
      541 gattcgcaaa attctggttc gactctctcg atacaaaaaa tcatatggtt aggattcaca
      601 atagtgacaa aatggaggtt aaaagaatga agatgatccc tttagagtgt attgtacgcg
      661 gttactttta tggatctctg gaagaacgat atcataaggg gattgcacat gatttttttt
      721 caacttcttt tgtgccaata aaggcttcaa aattacctga gcctatattt gatccgacaa
      781 caaaatctga agaacatgat atccctaaaa caaaagaaga aatagtatct tctggtctat
      841 tgtcaaaaga agattatgaa tatgtgaaag aaacctcact tatgttatat aaaaaaatga
      901 gctcaattgt tgaaaagtcc ggatttatta tcgcagatgt taaatttgaa ttcggtcgag
      961 atctaagaac tggagaaatc ttattaggtg attcccttgg cccagatgaa taccgacttt
     1021 ggctaagatg tcattatatg cctggaaaaa gccaggaaag ctatgataaa caattgttac
     1081 gggattggct tgtaaaaata ggttttaaag aaaccataat ggaatattca aaaaaaggag
     1141 aaaaaccccc tcctcctgca attccaaaag aaatcgcaat agagttaagc aaaagatata
     1201 tttttgctta tgaaaaaatt agcggaaaaa aattctaata tgtagcaaga acaatgtcaa
     1261 gaagtgcgac gtcttttaaa aggcagatgt atcgaaagac ccgatttaca ttaatctgtc
     1321 ataaccaaca atatcactaa ggttatttag actaaacgtc aaggactatt tgaattactt
     1381 tccatattgc ggacgtctta aatatacaat cgctgatatt attcaatatt tatatttaaa
     1441 atagcccttg tcttaggatt ctgtaacagt cgtactattt ctctaggtat atctaaagaa
     1501 gctttatccg tattcagaca tagcgttctt gaacaagcaa aatt
//
LOCUS       DATAAS010000250         3736 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4044322, whole genome shotgun sequence.
ACCESSION   DATAAS010000250 DATAAS010000000
VERSION     DATAAS010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3736)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3736)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3736
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4044322"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            371..1120
                     /locus_tag="VHF08_04035"
     CDS             371..1120
                     /locus_tag="VHF08_04035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chlorite dismutase family protein"
                     /protein_id="HEX2067848.1"
                     /translation="MASSAERSTAGKNSSDTAEKGEGQTAATSTYFLNFSFFKVDSKW
                     RWLNEIGKEEAAKEFASLIEVANTKMRVRTYTTLGIRADTDFMLWMISDSVEKMQILT
                     SKIYSTVLGKYVEPSQVYLSASRPSVYVNRVTQGFATGEEPLKYVIVYPFVKSREWYL
                     LPFEQRKKMMEEHIIIGRKFPEIRLNTSYSFGLHDQDFMLAFETNNLITFQDLIIQLR
                     ETQVSRYIVRDTPMIVCLYKDIIDIIRSLGG"
     gene            1129..1773
                     /locus_tag="VHF08_04040"
     CDS             1129..1773
                     /locus_tag="VHF08_04040"
                     /inference="COORDINATES: protein motif:HMM:NF020398.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1802 family protein"
                     /protein_id="HEX2067849.1"
                     /translation="MMAALKEWAIVCKALEEGRQVLLLRKGGIMEYRQGFEIKHNKFL
                     LFPTFEHQSKEYIQPDYINNLDIILQHQLTTPYHPTANSGRNKITSYAKVIDVKEVND
                     KSILRKLEKYHIWNDRYVNLRMDYNPKKPISVLLLRVYKMNNPLEVDIKREWAGCKSW
                     VSIEYEFPQLIDNSTNSRDNNDDPLYLPHVQQEQPVIDNLKFNQIASEIKEVLN"
     gene            1777..2808
                     /locus_tag="VHF08_04045"
     CDS             1777..2808
                     /locus_tag="VHF08_04045"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX2067850.1"
                     /translation="MKYRKLGRSRIKVSEIGFGAWTIGLDWWGKKIDDDEAIRMLKRA
                     YDLGINFYETADMYGNGKSEKIVSQAFKDMRDEVVYSTKWGYDMYDAIQIGHNELPQK
                     HNPEFLKYALQQSLNRLQTDYIDVYSLHNPKMDAIKNDNLFISLDKLVQSTKIKSHGV
                     ALGPAIGWKDEGLLAIEKRNITCLQTVYNVLEQDPGRAFLNAVRKNNNDVGIMVRVPD
                     ASGVLTGKVNEKTAFDKNDHRSNRKKEWILEAMQKVEKMKPIANARGWSISQLAIKFI
                     LSQKEISIVLPTVIDVGEIESFAEIADGNYLNENEMAEIANLYNNNFYIRQQSSYSSV
                     ATSSSPSKL"
     gene            2877..3275
                     /locus_tag="VHF08_04050"
     CDS             2877..3275
                     /locus_tag="VHF08_04050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2067851.1"
                     /translation="MINSEKRNSAPRIMVVDDETDITLQLSVVLEENGFTVDSFNEPL
                     LALENFKPDLYDLLILDIKMPKMNGFELYKQIKKIDAKVKTMFLTALTELQEYEVFRK
                     EVFPKLGERYFVPKPIENEDLIKRVNTILS"
BASE COUNT         1381 a          506 c          682 g         1167 t
ORIGIN      
        1 atgaatactt atcaaattct ttttttggaa attttacacc ttttaatata tacaattcaa
       61 ggcaaggata tggagagaag tgtatatgaa aaattatacc aatgaccggt tctttctgag
      121 agttatccta catgcttaca atgttgaacc tttttacagt ggttctaatt cttttatata
      181 atcacaaata actaagaaaa aaattgccca tatttttgat gatcatcttt aagagttaat
      241 agctaagtcg tctgacagca gtaaatactg gatgaggttg tcgtctttta catatatttg
      301 aaacaaaagc aaatatttta tctaatagag gtaaaataaa atatagtttt tattcatgat
      361 tgattcgtta atggcatcca gcgcagaaag gtctactgca ggaaaaaata gtagtgatac
      421 agcagaaaaa ggagaaggtc aaacagcggc aacatccaca tattttctga acttttcatt
      481 ctttaaagtt gattctaaat ggcgatggtt gaatgaaatt ggcaaagagg aggctgcaaa
      541 agaatttgcg agtttgatag aagttgcaaa tacaaagatg agagttcgaa cttatactac
      601 tttgggaatt cgtgcagata ctgattttat gttatggatg atttctgatt cagttgaaaa
      661 aatgcagata ctgacatcaa aaatatactc tactgtttta ggaaaatatg ttgaaccttc
      721 tcaagtatat ctctctgctt ctcgtccgtc tgtgtatgta aatagagtca ctcaaggatt
      781 tgcgactggc gaagaaccac ttaagtacgt cattgtatat ccttttgtaa aatcaaggga
      841 atggtattta cttccatttg aacaacgaaa gaaaatgatg gaagaacata taataattgg
      901 aagaaaattt ccagagatca gactcaatac atcatattct tttggccttc atgatcagga
      961 ttttatgctt gcatttgaga ccaataactt gatcactttc caagacttaa taattcagtt
     1021 gcgtgaaact caagttagca gatatatagt tagagatact cctatgatag tctgtcttta
     1081 taaagatatc atagatatta taaggagtct tggaggataa ggataattat gatggccgca
     1141 ctcaaagaat gggcaatagt ttgtaaagct ctggaagaag gcagacaagt attgcttcta
     1201 cggaaaggcg gtattatgga atacaggcaa ggttttgaaa taaagcacaa caagttttta
     1261 ttattcccaa cgtttgaaca tcagtcaaag gaatatattc aaccggatta tattaataat
     1321 ttagatatta tattacaaca tcaactgact actccttatc atcctactgc aaatagtggc
     1381 agaaataaaa taacttcata tgcaaaagtc atagatgtta aagaagttaa tgataagtca
     1441 attctgcgaa aattagaaaa atatcacata tggaatgatc gttatgtaaa tctacgaatg
     1501 gactataacc ctaaaaaacc tataagtgta ctattgttgc gagtttataa aatgaataac
     1561 ccgttagagg ttgatattaa acgtgaatgg gctggatgca agtcatgggt ttcgattgaa
     1621 tatgaatttc cacagttgat tgataacagt actaacagta gagacaataa tgacgaccca
     1681 ctgtatctac cacacgtgca acaagaacaa ccagttatag ataatttgaa attcaatcag
     1741 atcgcatccg agattaaaga ggttttaaat taagatatga aatatcgaaa attaggaaga
     1801 agtagaatta aggtaagtga aatagggttt ggagcctgga cgataggtct ggattggtgg
     1861 ggtaagaaga tagatgacga cgaagccatc aggatgttaa aacgtgctta tgatctaggt
     1921 atcaattttt acgaaacagc agatatgtat ggaaatggta aaagtgaaaa aatagtctca
     1981 caggcattca aagatatgcg tgatgaagta gtctattcta caaaatgggg ttatgatatg
     2041 tacgatgcta tacagattgg ccataatgag ctaccacaaa aacataatcc tgaattttta
     2101 aagtatgcat tgcagcagag cctcaatcgt ttgcaaactg attatattga tgtttatagc
     2161 cttcacaatc caaaaatgga tgctattaaa aatgataatt tgtttatctc actcgacaag
     2221 ttagtacaaa gtacaaaaat caaaagtcat ggggtagcat taggtcctgc tatcggttgg
     2281 aaggatgaag gacttttggc aatagagaaa cgaaacatta catgtcttca aacagtttac
     2341 aatgttttgg aacaggatcc cgggagggca tttctaaatg cagtaagaaa gaacaataat
     2401 gatgtaggaa ttatggttag agttcctgat gcttcaggag tattaactgg caaggttaat
     2461 gaaaaaactg catttgataa gaatgaccat agaagcaaca gaaagaaaga atggattcta
     2521 gaagctatgc aaaaagtaga aaaaatgaaa ccaattgcaa atgcaagagg atggagtata
     2581 tcccaactgg caatcaaatt catactatct caaaaagaaa tatcaatagt gttacctacc
     2641 gttattgatg ttggggagat tgaaagcttt gcggaaattg ccgatggcaa ttatctaaat
     2701 gaaaacgaaa tggcagagat agccaatctc tataataata acttttatat tcgccaacaa
     2761 tcttcttatt cttctgttgc aacttcgtcc tctccttcta aattatgaag gaatagaaga
     2821 atgctatact attgccttcg ttattaataa taataagctt acattctgta atttttatga
     2881 tcaatagcga aaaaagaaat tcggctccac gaattatggt tgtcgatgat gagacagata
     2941 ttaccctaca attgagcgtt gtgttagaag agaatggatt cacagttgat tcatttaatg
     3001 agcctctttt ggcattagaa aattttaaac ctgatttgta tgacttatta attctcgata
     3061 tcaaaatgcc aaaaatgaat ggatttgaat tatataagca aataaaaaaa atagatgcca
     3121 aggtcaagac aatgtttttg acagctttga ctgaattgca ggaatatgag gtatttagaa
     3181 aagaagtgtt tcctaaatta ggcgaaagat attttgttcc aaaaccgatt gagaatgaag
     3241 atcttataaa acgagtaaat acaatattga gctaaattaa aaacaattag catatctcag
     3301 aaaaaataga ttcaattttt tccgtgcctt atttttattt taaagtgtgt tagaagtgta
     3361 ttgtattgac gtcgccttga caatactaat attatttaac agatagttat tttaattata
     3421 taaacataga atttagataa taattatata tatatataat ttttaataaa gaactcataa
     3481 tatagtaaat ttttactaaa aatgacataa tttatttatt gctatttata attcattgct
     3541 tatcgtaata atgaatattt tatggatgta aatttgtgat agattactaa tctataatac
     3601 ttgacaatga gaaatgtgac acaacaaatg ttagttaaaa aataatttct gtcatagatg
     3661 atgaaggtaa tatttgatta tgacaggatt agaatatata aatttgaagt acatatactg
     3721 gctgtcaatt ggcatc
//
LOCUS       DATAAS010000251         4321 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_813281, whole genome shotgun sequence.
ACCESSION   DATAAS010000251 DATAAS010000000
VERSION     DATAAS010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4321)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4321)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4321
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_813281"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..279)
                     /locus_tag="VHF08_04055"
     CDS             complement(<1..279)
                     /locus_tag="VHF08_04055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067852.1"
                     /translation="MRPGRIEDADKVGKIIFEAFSAVADKHNFPPDFPSVDVARGLAS
                     SLLSNPRFYSIIAEDNSSNGGEDKDSIVGSNFLDERSNIVAGVGPLTID"
     gene            complement(371..1318)
                     /locus_tag="VHF08_04060"
     CDS             complement(371..1318)
                     /locus_tag="VHF08_04060"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03619 family F420-dependent LLM class
                     oxidoreductase"
                     /protein_id="HEX2067853.1"
                     /translation="MKIGLVLPQAGQQATRENVIQMAKNAESEGFDSLWVFERLLWPI
                     NPKTPYVATPDGSLPIEYQIMLDPLETLTYVAANTNKIALGTSVIDMLFHNPVILARR
                     LATLDILSEGRSIAGFGIGWSKDEYQASNIPFQNRGKRADEYVQVLKRIWTDDVVEFK
                     GKYYSVPASKIGPKPIQKPHPPVYLGGFSPNTFSRIVNYDTNGWLAVVGGPLEYLDNT
                     IKTIKDIANKANKDPNKFKVILLAHLNVALDQKSQSTTTNEDQRFPFTGTIDQIGNDI
                     KRIKQMDIDHIIFGYVFVPIGRDVNKILDLTKQLAKFAR"
     gene            complement(1521..2498)
                     /locus_tag="VHF08_04065"
     CDS             complement(1521..2498)
                     /locus_tag="VHF08_04065"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX2067854.1"
                     /translation="MGFDNSSTRNGGKEKSHSREQVLSYAIKAESLGYDSLSVNDHII
                     FRTSWLDSISVLAAVAAVTNRIKLGTSLLNIVVRNPIICVKSLSAIDILSSGRLFAAG
                     VGPGSHKGDYDVCGIPFEERWSRFNEALEILKMLWNNNYRVDISSNMKPPTSKPVDYN
                     GKYSQLKKISIEPKPFQKPHPPIFIGTWGSSEAGLKRAAKYGDGWMASAYNITPDKFK
                     EKWKVLLSYRKVLHKDTHSFENSVVSMFGYIDDDRNKVHRMVKDVLSPALGRPTEELK
                     NSLLFGSTDHCIEKIRAFYEAGAKRIHFWPVSDYLEQIETFRDKIVPCY"
     gene            3014..3454
                     /locus_tag="VHF08_04070"
     CDS             3014..3454
                     /locus_tag="VHF08_04070"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067855.1"
                     /translation="MKVKFVLTTVFILIMFLYLPIPLTFSQVPDISKYGVEVTYPTNG
                     EMVTVGELTIHGTASYNATFGDCTVYADWNDLEPMQKTTPAGMNYTEFGRTNDYSRWL
                     FTYTDKYHVISEGTNELTAKLSCDIGPFNSTKYDSVNVIGILGD"
     gene            complement(3672..4112)
                     /locus_tag="VHF08_04075"
     CDS             complement(3672..4112)
                     /locus_tag="VHF08_04075"
                     /inference="COORDINATES: protein motif:HMM:NF024637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ribbon domain-containing protein"
                     /protein_id="HEX2067856.1"
                     /translation="MSSTNRPNILEWFKQNYPKEYGLAIEVNQRMGKILSQTEMPNPD
                     FKNAPVKLEVTRNQQDSTKLQLVANDYGLIYIGTVVKAIIDLLSAQFGGLSASAIGNE
                     ILDRKIKEVISHYFATQTLKKCPNCQSENRDDAKYCDSCGHKFV"
BASE COUNT         1296 a          808 c          723 g         1494 t
ORIGIN      
        1 atcgattgtt agcggtccta ctcctgctac tatatttgag cgttcatcta aaaagttgct
       61 tccaacaata ctatctttat cctcaccgcc gttactagaa ttatcctcag caattataga
      121 gtaaaatcta ggattggata ataatgaaga cgctagacct ctagcaacat caacagatgg
      181 aaagtcaggc ggaaaattat gtttatccgc aaccgctgaa aaagcctcaa aaattatttt
      241 gcctacctta tctgcatcct ctatccttcc aggcctcaat ctaaaggtat ccttctggac
      301 caaatgaata tacaaaatct tatggagtag ccgttatatt cgtttagttc atctttttgt
      361 tttagaatta ctacctagca aatttggcaa gctgttttgt tagatctaat atcttgttaa
      421 catctctacc tattggaaca aagacgtatc caaatattat atgatctata tccatctgtt
      481 ttattctctt tatatcattg cctatctgat ctattgttcc agtgaatgga aatctttggt
      541 cttcatttgt tgttgttgac tgactttttt gatctaaagc tacgttgaga tgtgctaaaa
      601 gtattacctt aaacttgttt ggatccttat ttgctttatt tgctatatct tttatggtct
      661 ttatagtatt atcaagatat tcaagtggtc ctccaactac agctagccag ccatttgtgt
      721 cataatttac aattctagaa aatgtatttg ggctaaaccc ccctaggtaa actggagggt
      781 gtggtttttg gatgggctta ggacctattt ttgatgcagg tacactataa tacttacctt
      841 taaactcaac aacatcatct gtccatattc gttttaatac ttgaacatac tcatcagctc
      901 tcttacctct attttgaaat ggaatgttag atgcttggta ttcatccttg gaccatccta
      961 taccaaatcc tgctatactt cttccttctg ataaaatatc aagtgtagca agccttcttg
     1021 ccaatattac aggattatga aatagcatat ctataacgga tgttcctaat gcaattttgt
     1081 ttgtatttgc agccacatag gtgagcgtct ctaatgggtc tagcataatc tggtattcaa
     1141 tgggaagact tccatcaggg gttgcaacat aaggtgtttt tggatttata ggccaaagaa
     1201 gcctttcgaa gacccataaa gagtcaaagc cttcactttc agcattcttt gccatctgta
     1261 ttacattttc tcttgtagcc tgctgaccag cctgtggtaa aactagacct attttcaagg
     1321 tgatttcaaa ttatattgct tctattaaag tctatttaaa gtctaatatt gttctagagt
     1381 taatcgaaga gttatacact tcttcctcaa aattcccgat tacccttgaa tatctattaa
     1441 gagcaactat ttttttatca tgatagttcc tctcttttat gctcctatgc tcctagtttt
     1501 tgttaatctc taaatttggt ctaatagcag ggaactatct tatctctaaa agtctcaatt
     1561 tgttctagat aatcactaac cggccaaaaa tgaatacgct ttgcaccagc ctcataaaaa
     1621 gcccttattt tttcaataca atgatcggtg gaaccaaaga gaagcgaatt ctttaactct
     1681 tctgttggtc ttcctagagc aggggatagt acatctttga ccattctgtg gactttgttc
     1741 ctatcgtcgt caatgtatcc aaacattgac acaacagaat tttcaaatga atgggtgtcc
     1801 ttgtgcagta ctttcctata agataaaagt accttccatt tctctttgaa cttgtcaggc
     1861 gtaatgttgt aagcagaggc catccaaccg tcaccgtact ttgctgctct ttttagccca
     1921 gcttccgacg acccccaagt tccaatgaag atgggaggat gaggtttttg aaatggtttt
     1981 ggttcaatcg agatcttttt cagttgagaa tatttgccat tatagtctac gggttttgaa
     2041 gttggcggct tcatgttact gctaatatcc actctataat tgttattcca aagcatcttc
     2101 aaaatctcta atgcttcatt aaacctgctc catctctctt caaatggaat tccgcagaca
     2161 tcataatctc ctttatgtga gccaggccca actcctgctg caaatagcct tccagaggat
     2221 aaaatatcta tggctgataa agattttaca caaattatag gatttcttac gactatattc
     2281 aaaagagatg taccaagttt tattctatta gttacagcag caactgctgc taaaacgctt
     2341 attgaatcca accaactagt tctgaaaata atgtgatcat ttacactcag tgaatcatat
     2401 ccaagagatt ctgcctttat tgcgtatgaa agtacttgct ctcttgaatg agatttttcc
     2461 tttccaccat ttctagtact actgttatca aaccccataa caggtaaatg aactccaaac
     2521 gctagctgtt ctgttaatca gacaatttaa tcaatatatc ataaaaaaga gtttattaaa
     2581 tgcagtatga tattgcccgt gctccaataa aggttataag attatacttt tacttacttg
     2641 gcccagatgt gatgttggat tactccaatc tcttctttat gggaacttat tacccatcaa
     2701 aagttcaagg gttcaagatt agtttagaca atagtccgtt ggatataaac tgcaattacc
     2761 tttgttgaga aagcaaaaaa gctagttctt ggcaatagga aaggtaaaca aaaatgtggc
     2821 tccctttcca tctagattat tttcagtgcc catcacattt ttagtgggtg ggttatatta
     2881 tgataataat gtaaatgagt aaaactatac gaaatcattt cgtattatga tatatgaact
     2941 ctaaatagtt tgacaatgct cattaaatga tggatgccag tagttgaata gagtgaggta
     3001 cgacagcttt aacttgaagg ttaaattcgt gctgaccaca gtttttatcc ttatcatgtt
     3061 tttatatctt cctattcctc ttactttttc tcaagtccca gatatctcca agtatggagt
     3121 agaagtcaca tatcctacta atggtgaaat ggttactgtg ggtgaactta caatacatgg
     3181 tactgccagc tataatgcca cgtttggtga ttgtacagta tatgctgatt ggaatgactt
     3241 ggagccaatg caaaagacga ctcctgctgg gatgaattat acagagtttg ggagaacaaa
     3301 tgattattca agatggcttt ttacttatac agataaatac catgtaataa gtgaaggaac
     3361 aaatgaattg actgccaaac tatcttgtga tataggtcct tttaactcta caaaatacga
     3421 ttcagtaaat gttattggta ttcttggaga ctaaactagt atcagtatca tcttagtaca
     3481 aattcatcca atatcatctt tattcatact atttgtgatg acaagtctat gaatcagtta
     3541 ttaggtgact atctagttac ataggaaaat cttttgtaaa tgcttaatta tagttctgtc
     3601 ccttaaggat tgttttgtat gcgccaagtt ctatctgact attgacatag agcatcagta
     3661 gtttttacca gtcacacaaa cttgtggcca caactatcac aatatttagc atcatctcta
     3721 ttttcgcttt gacaatttgg gcatttcttc agtgtctgtg tagcaaagta atgagaaatg
     3781 acctctttta tcttcctatc taaaatctcg tttccaattg ctgatgctga aagtccccca
     3841 aattgtgcag acagcaaatc tattatcgcc ttaacaactg tacctatata tattaggccg
     3901 taatcgtttg ccactaattg taactttgta ctgtcctgct gattacgagt gacttctaat
     3961 ttaaccggtg catttttaaa atctggattg ggcatttcag tttgactaag aatcttgccc
     4021 atacgttggt taacttctat tgccaggcca tattctttgg gataattctg tttgaaccac
     4081 tctaatatat taggcctgtt tgtgctagac atctgtaact gtatttcaac agtaataatt
     4141 aaccatgttg gactgagggg ttgttatagg ttattcgaac tcagagtact cagaaggatt
     4201 taacgataaa acttgcagac aaggaatata atcaattaat atataaagaa agcaggtaaa
     4261 atagatagaa gacgaagaat tagaaaataa aagtaaaagg ataattgtaa gaatttagta
     4321 t
//
LOCUS       DATAAS010000252         2293 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1430492, whole genome shotgun sequence.
ACCESSION   DATAAS010000252 DATAAS010000000
VERSION     DATAAS010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2293
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1430492"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(305..1411)
                     /locus_tag="VHF08_04080"
     CDS             complement(305..1411)
                     /locus_tag="VHF08_04080"
                     /inference="COORDINATES: protein motif:HMM:NF008653.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2067857.1"
                     /translation="MTNVRIENLTKKYGNVKALDDFSLEIKSGEFMVLLGPSGCGKTT
                     AVRCIAGLISPSNGQIYIGDQLVNDLPPKDRDVAMVFQNYALYPHMSVYDNIAFPLKM
                     RKKSRRNIEEKISYVADLLGIKDLLNRKPKEISGGQMQRVALGRALVREPKVFLMDEP
                     LSNLDARLRMYMRTEIKKLQKKIGITTLYITHDQIEAMSMADKIAVMNRGLLQQVGTP
                     QQVYNQPANTFVAGFIGSPSMNFLECRLVGDSSTIRLESDNISFKLPYGTTRIPSKPL
                     PKNVTIGMRPKDVVLLENENPTDIKMKGQITFTEMLGDDSIVEAKIGSNLIKVANSNS
                     NFDLSVGQDVMFGIPYSKLHFFETETGNRLYYNT"
     gene            1856..>2293
                     /locus_tag="VHF08_04085"
     CDS             1856..>2293
                     /locus_tag="VHF08_04085"
                     /inference="COORDINATES: protein motif:HMM:NF013697.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEX2067858.1"
                     /translation="MKISKIICTSIVLTIVLLVSLAPSFSTTAVAQKQQVTLTAIVAE
                     PKERWDILFTDALQKLREKHPDMDIQVDYRVLPYDATRTQILTAMVGRTPIDLISVDQ
                     IWLGEFAEGEFLTDLTERANTWGKEKDWYKTNWDGGKYNNKVYG"
BASE COUNT          735 a          385 c          390 g          783 t
ORIGIN      
        1 aagatgtaat tttagcatat aaaatatgtg gtctcaggat atgtttactc ctgctggtac
       61 tattactact acttttgatg tgatacgtat gcatataata tattcacata aataaaaatc
      121 aagtattgta tccaatgagt aagaggctta tcatcattgc cgctgttgct agttctgcat
      181 ctattgctat gttattgctg agtgcataat aacaaaaaaa gagagagagt gtagtaataa
      241 ctttctatta acaacaatta tctgtaataa tctttatttt aatattcttc tttcaattaa
      301 tagcttatgt attgtagtat aatctatttc cagtttctgt ctcgaaaaaa tggagcttgc
      361 tataaggtat tccaaacatg acatcctgac caacactaag atcaaagttg gaatttgagt
      421 ttgcaacttt tattaaattt gatcctatct ttgcctctac tatcgaatca tcacctaaca
      481 tctctgtgaa agttatttgg cccttcattt tgatatctgt aggattttca ttctctaaaa
      541 gaacaacatc cttaggtctc attccaattg tcacattttt aggtaagggc ttcgacggta
      601 ttcttgttgt accatatgga agtttgaatg aaatattatc agattcgaga cgaattgtag
      661 aactgtctcc aacaagtctg cattccaaaa agttcattga tggacttcct ataaaacctg
      721 ctacgaatgt atttgcgggc tggttatata cttgctgtgg agtgccaact tgttgaagta
      781 aacctctatt cataactgca atcttatctg ccatactcat agcttctatc tgatcatgtg
      841 tgatatacag tgtagttatg cctattttct tctgcaactt cttgatttct gttctcatat
      901 acatacgcag tcttgcgtca aggttactta gtggttcatc catcagaaag acttttggtt
      961 cacgtactag tgctctacct aatgcaactc tttgcatctg tcctccgctt atttctttgg
     1021 gttttctgtt aagaagatct tttattccaa gtagatctgc tacatagctg attttttctt
     1081 ctatgttacg tcttgatttc tttctcattt ttaatggaaa tgcaatatta tcatacacac
     1141 tcatatgagg atagagagca taattttgga acaccattgc aacatctcga tcctttggag
     1201 ggaggtcatt gactaattga tcacctatat atatttgacc attgctgggg ctaatgaggc
     1261 ctgcaataca ccttacagct gtggtctttc cacaaccaga aggaccgagg agaaccataa
     1321 attcaccaga ttttatttct aaagagaaat catccagtgc ctttacattt ccatatttct
     1381 tggttaggtt ttcgatccgc acattggtca tataaaaaag ccctctatgg acaggtgtgt
     1441 ctggtaggag atattaattt tcttatatag tatgcattag ttatctttag cttcatcact
     1501 tgcttgaaaa aatactatga aaatttaatt acaagataac aaagttgaat aagacaaact
     1561 gtcctaacta acaagatgat ctgatgttga gtctatctag cattataata caagatgact
     1621 atcaaaatat aagaattaga tgagaatcct ctaccattaa atcatcttga gtactagaat
     1681 tgagaaaata aactacgaag aatatgtata tttaaaagga atttttttgt acaaaaaagt
     1741 ttggttgatc tctattctaa atatgacatt tatttatgat cttatctggt attaatatgc
     1801 aagaattcta aaaaagatag caactgttaa aaaatatgac ttcataagac tctggatgaa
     1861 gataagtaag attatttgta ctagtatcgt gctaaccata gtgctattag ttagtttagc
     1921 accaagtttt tcaaccacag ccgtagctca gaaacaacaa gtcaccctta ctgcgatagt
     1981 agcagagcca aaagaaagat gggatatttt gtttactgat gcattgcaaa agttaagaga
     2041 aaaacatcca gatatggata ttcaagtaga ctatagagtt ttaccatacg atgctaccag
     2101 gacgcaaatc ttaacagcaa tggttggccg aactcctatt gatctaatat ctgtagatca
     2161 aatctggctt ggagaatttg ctgagggaga atttctaaca gatcttacag aacgtgctaa
     2221 tacatgggga aaagagaagg attggtataa aactaattgg gatggaggta aatataacaa
     2281 taaagtatat ggt
//
LOCUS       DATAAS010000253         4284 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2962247, whole genome shotgun sequence.
ACCESSION   DATAAS010000253 DATAAS010000000
VERSION     DATAAS010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4284)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4284)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4284
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2962247"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1308
                     /gene="asnS"
                     /locus_tag="VHF08_04090"
     CDS             <1..1308
                     /gene="asnS"
                     /locus_tag="VHF08_04090"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004816 - asparagine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HEX2067859.1"
                     /translation="MYVRADDIKSIDYIGKEVTIRGWVYRLRKQKENTFVLIRDDRGG
                     IIQSIFPSEKVTNLTIESSIEINGVVRQDSRAPEGGFEIKGNKLEIFHIADPDYQIGE
                     YQSSELLLDYRHLSLRMRRMIAIAKIRVSILKYARQWFIENDWMEITPPIVVKGAVEG
                     GSTLFKIKYFDEEAYLSQSAQLYLEAMIFSLGRVWCLTPSFRAEKSRTIRHLAEFSHL
                     EAEAPWVNLEDILNIQEQLISYIVQKTVEERTKEFALLKRDVSQLKKVKVPFDRIQYE
                     EAIEILRSKGFSIEEKNGKKRNIRKGDDLNIESERELTRNTEKPIFIIGYPIQVKPFY
                     VKEDPKNEGIGLAADMLAPSGFGEIISGGLREEDITSITKRIEKEGLNPDAYKWYLEL
                     RKYGSVPHGGFGLGIERLMRWIINIEDIKDTSLFPRTMSRVTP"
     gene            1622..2431
                     /locus_tag="VHF08_04095"
     CDS             1622..2431
                     /locus_tag="VHF08_04095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEX2067860.1"
                     /translation="MSEQPEEGAGSLFFELAGDLRLSMLMKLTQKQYRLSQLATELDA
                     TMQEAHRNMTRLIDSGLVMKDSEGDLILTPYGITIVSLIPSYDFLFNQKEYFLEHSLG
                     ELPRKFIQRLGSLHNCEIVHGVMAILQRWKTLYAMSNEYIKEIMAQVPLDLIETISDR
                     VQMGVKFSYIFASNVVIPKGRSQILQKIGWRNLMAKGLVERRMLDEVKIMTIFNEKQS
                     CVLFPNLKGEPDLNIMFYSEDNEFHDWCEDFFLYQWEKASAFDEGKLNPEV"
     gene            2995..3204
                     /locus_tag="VHF08_04100"
     CDS             2995..3204
                     /locus_tag="VHF08_04100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HEX2067861.1"
                     /translation="MNAELGSEDSIVNELKKIEGVKEVYQVYGVYDIVAQVEADIMEK
                     VKETITWKLRKLNGVKSTLTMIVME"
     gene            3391..3555
                     /locus_tag="VHF08_04105"
     CDS             3391..3555
                     /locus_tag="VHF08_04105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C2H2-type zinc finger protein"
                     /protein_id="HEX2067862.1"
                     /translation="MDLFRRKNKEDQKGFKCEYCNLKFDDKDRMKRHVRKAHSEKGGD
                     MPSSNPFGGF"
     gene            3618..4079
                     /locus_tag="VHF08_04110"
     CDS             3618..4079
                     /locus_tag="VHF08_04110"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEX2067863.1"
                     /translation="MFPIHDDTERIHGRPYVNYSLIAINVIVFVWEIIVTGYFSDEQA
                     VAEIFSKYGAVPRSVLNGDLISILTSMFMHGGIAHIIGNMVFLFVFGDNIEDRFGHIK
                     YLLIYIAWGAVAAIIHSIFAVSTGGGMIPAVGGIWCYFGSYGCIPYHVSKS"
     gene            4063..>4284
                     /locus_tag="VHF08_04115"
     CDS             4063..>4284
                     /locus_tag="VHF08_04115"
                     /EC_number="3.4.21.105"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEX2067864.1"
                     /translation="MFPRAKIFTVIIAFFITTIRIPALAYIPFWFILQVIFGLIDPFG
                     GIAYLAHIGGFVAGLGTGYTWKLFLSGQNI"
BASE COUNT         1516 a          627 c          832 g         1309 t
ORIGIN      
        1 atgtatgtca gagcagatga tataaagtct attgattata ttggaaagga agttactata
       61 agaggatggg tatatcggct aagaaaacaa aaggaaaaca cttttgtctt gatcagggat
      121 gatcgtggcg ggataatcca gagtatattt ccaagcgaga aagttacaaa tctgactata
      181 gagtcctcta ttgaaatcaa cggtgtcgta aggcaagata gccgagctcc agaaggtgga
      241 tttgaaatca aaggcaacaa gttagaaatt ttccatatag cagaccccga ttaccaaata
      301 ggggaatacc aaagctcaga actactatta gattatagac atctctccct gcgaatgaga
      361 agaatgatag caatagcaaa gattcgtgtt tcaattttga aatatgcacg tcaatggttt
      421 attgaaaatg attggatgga aataactcct ccaattgttg ttaaaggtgc agtcgagggt
      481 ggctccactc tgttcaaaat aaagtatttt gatgaagagg catatctctc acaaagtgca
      541 caattatacc ttgaagctat gatattcagt ctgggtcgtg tctggtgtct tactccttca
      601 tttagagcag aaaaatcaag aaccattagg catctggcag aattttcaca ccttgaagct
      661 gaagctccat gggttaacct ggaagatata ttgaatatac aagaacaatt gatctcatat
      721 atagtccaaa agacagtaga agaaagaaca aaagaatttg ctctgctgaa aagagatgtt
      781 agtcaactaa aaaaagtcaa agtaccattt gatagaatac aatatgaaga agcaattgaa
      841 attttacgat ccaaaggatt cagtatagaa gaaaaaaatg gaaagaagcg taatataaga
      901 aagggagatg atcttaatat cgaatcagaa cgtgaattaa caagaaatac tgaaaaacct
      961 atttttataa taggttatcc aattcaagtc aagccatttt atgtcaagga agaccccaag
     1021 aatgaaggga taggacttgc tgcagatatg cttgcgccta gcggttttgg agaaattatt
     1081 agcggtggtt taagagaaga agatatcact tccattacaa agagaataga aaaagaaggg
     1141 ttgaatccag atgcctataa atggtatcta gagctgagaa agtatggatc cgttccacat
     1201 ggaggatttg gactcggtat tgaacgcttg atgagatgga ttataaatat agaagatatt
     1261 aaggatacat ctctttttcc caggacaatg tcaagggtta cgccatgagc tttgacgata
     1321 acataataat aataataata attaggaagc tttttaacaa atatttattg gtacactcat
     1381 aattcagata ctttaaactt atttattaga attattatat gtaagaagtt atatccttat
     1441 gattgataat gaagtgagtc taataaaaga ctggaatatt aattcctgct atgcttatat
     1501 aaatattgta tcacgataga taattattat atacttcaaa ttgaagtttc cagaagttat
     1561 ggataacgct ctacaattcc tttaacaagt ttaaatttga gatatgcgga atgtcagtta
     1621 aatgtccgaa cagccggaag aaggagctgg ctctcttttc tttgaactcg caggtgacct
     1681 aagactatct atgttaatga aactgacgca gaaacagtat cgactgtccc aacttgccac
     1741 ggaactcgat gctacgatgc aggaggcaca tagaaatatg acacgcttaa tagactcagg
     1801 tctagtgatg aaagatagtg aaggagattt aatcttgaca ccatatggca ttacgattgt
     1861 ctcgcttatt cccagttatg actttttatt caaccaaaag gaatattttc ttgaacatag
     1921 cctgggagaa ctccctcgaa agttcataca aagattaggt tcacttcata attgtgaaat
     1981 agtacatgga gtcatggcaa ttctacaacg ttggaaaaca ctttatgcaa tgtccaatga
     2041 atatataaag gaaattatgg ctcaggtgcc tcttgatttg atagaaacaa taagcgacag
     2101 agtacagatg ggagttaaat tttcatatat atttgccagc aatgtggtaa taccgaaagg
     2161 aagaagtcaa atactccaaa aaatcggatg gcgcaatcta atggctaaag gtttagtgga
     2221 gagacgaatg cttgatgaag ttaagataat gacaattttc aacgaaaagc aatcatgtgt
     2281 tctatttcct aatcttaaag gagagccaga tttaaatata atgttttaca gcgaagataa
     2341 tgaattccat gattggtgcg aagatttttt tttatatcag tgggaaaaag cgagcgcatt
     2401 tgatgaaggc aaattaaacc cagaagtcta gactactttt aaattgtcaa tactaatttg
     2461 gtttttttag atattttcta tgaacattgc gataatcaac aacactgtga aaactgtaat
     2521 ataattgaag attctcgaac aagaatgaca atagggtgaa gttaaaaatt tctgacatag
     2581 tgtttaatag ccaagacgct aaactaatat gccgaatggc tctaaaggat aaaacatgaa
     2641 ctcaacaata ttaatctaat ccataataaa atatcttttc atcgtaatcc taaacttctc
     2701 tcatttaata cttcaatctt cccaggacca atatgcagtt ttttatatag tgataccata
     2761 caaaattgca ataggatcta ctatttggga gtcacattta tcactaatat tatgcatttg
     2821 aaagcgcctt aacacagaat aagctttctt tgatattgat ggtaaaataa tctatggtgc
     2881 ttagtttgct atatttattc tagtattgaa ctagaaaata aaaatttcat aatttttcat
     2941 tatgttttta tattcaactt ggaataagct atcatgccaa aagcctttgt attaatgaat
     3001 gctgagctgg ggagtgaaga ttctattgtt aatgaactaa aaaaaattga aggtgtaaaa
     3061 gaggtctatc aggtctatgg agtatatgat atagtagctc aagttgaagc agatattatg
     3121 gaaaaggtca aggaaacgat tacgtggaag ctaagaaagc tcaatggtgt caagtcaact
     3181 ctcacaatga tagttatgga ataataagtg ttgatgaaat ctctgtcttc ttcttcttta
     3241 gccatatgtc atcaaatcca aacaatgaat cattaaactt ttagtaaaaa aacattctag
     3301 cagattttct aatatcctaa atgagaagtt tctttatata atcaacaata tattaataga
     3361 tattaattcc ttaatgcatt atgctttaat atggacttgt ttagaagaaa aaataaggaa
     3421 gatcaaaaag gcttcaaatg tgaatattgt aatttgaaat ttgatgacaa agatagaatg
     3481 aaaagacatg taagaaaagc acatagtgaa aaaggtggag atatgccatc ttcaaatcca
     3541 ttcggtgggt tttagaagag ataaacgcaa acgcttattt ccttatagat ctgtctaaca
     3601 aattagaaat aaataatatg tttcccattc acgatgacac tgaaagaatt catggaaggc
     3661 catatgtaaa ttatagtctg atcgcaatta atgtcatagt gtttgtatgg gagataatag
     3721 taacagggta tttctcagat gagcaagcag ttgcagagat atttagtaaa tatggtgctg
     3781 taccaagatc tgttctcaac ggcgatctaa tatcaatttt aacatcaatg tttatgcatg
     3841 gtggaatagc tcatataata ggtaacatgg tgtttttgtt tgtctttggg gataatattg
     3901 aagatagatt tggtcatata aaatatctac taatctatat tgcgtgggga gcggttgctg
     3961 caattattca cagcatcttt gcagttagca caggaggagg gatgatacct gctgtagggg
     4021 gcatctggtg ctatttcggg agttatgggt gcatacctta tcatgtttcc aagagctaaa
     4081 atttttacgg ttataatcgc cttctttata actactatcc ggatacctgc actagcctat
     4141 attccatttt ggttcatttt acaagtgatc ttcggtctga tagatccttt tggtgggatt
     4201 gcttatcttg ctcacatagg tggattcgtt gcaggtctag gaacgggata tacatggaaa
     4261 ctatttttgt caggacagaa tata
//
LOCUS       DATAAS010000254         7306 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3506272, whole genome shotgun sequence.
ACCESSION   DATAAS010000254 DATAAS010000000
VERSION     DATAAS010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7306)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7306)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7306
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3506272"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(100..258)
                     /locus_tag="VHF08_04120"
     CDS             complement(100..258)
                     /locus_tag="VHF08_04120"
                     /inference="COORDINATES: protein motif:HMM:NF025873.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEX2067865.1"
                     /translation="MQEDDHQTDSFDLDSIDEIGPATKGRLEESGFRSLKDLIVRGPA
                     DISEATGM"
     gene            686..832
                     /locus_tag="VHF08_04125"
     CDS             686..832
                     /locus_tag="VHF08_04125"
                     /inference="COORDINATES: protein motif:HMM:NF024638.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2067866.1"
                     /translation="MIVDLNLDNKYVIVIGGGTEGVRKVRGLLGQNCKIMVIVTVLID
                     ICSI"
     gene            820..1353
                     /locus_tag="VHF08_04130"
     CDS             820..1353
                     /locus_tag="VHF08_04130"
                     /inference="COORDINATES: protein motif:HMM:TIGR01470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2067867.1"
                     /translation="MLNLDKDGKIQVVKAKLKDANILDDYKNPFLILAATNDKSLNRK
                     LVDKGRQMGSFVYAADDPLYSDFSYASIINIEGIMQVAISTSGKSPIMARKVRIKAER
                     ILRRVIKRSDIENTKLQEFARIAAKPKIKTVDKRKEFLYSIIHDQQIQKLIKEDRFED
                     AKSTTLKLLEKWENKNK"
     gene            1353..2642
                     /gene="hemA"
                     /locus_tag="VHF08_04135"
     CDS             1353..2642
                     /gene="hemA"
                     /locus_tag="VHF08_04135"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEX2067868.1"
                     /translation="MTLSSSMIQSLQVINARVTFRNAPIHLLEKFAFIDIDYAYKKII
                     ENCNIRECVIIQTCNRVEVFAAGTGPYEKKLLEVWSSIIGLPVGEIENTAEISKDRDV
                     VLHLLKLASGLDSLVIGEDQILGQIKRAFDFANKNRYVGSTLLVMFDRAVKVGSKVRT
                     ITSLNKGSVSIGSIAVNLAEEYIENLKSKGILLIGTGEGASLVAKSLKQRDINFLVTS
                     RTFQRAKSFADTVGGEPIPFEKALEILHEIDLIFVSTTAPYYLVTYDRIEKAMSKREN
                     GMMILDLSNPRTVEERVASVSKVKLINMDQIAEIVEKNRRSRKNEIGSAQRLIDIEMN
                     SMYTIYKRKKADPIVDSVFKNVDTIRDRELKKAFSILGKKIGPEEYKIIEKLSYAIVE
                     GILSSPMNNLRKELEKCNEKDDDFMKFIIKMFSYENK"
     gene            2629..3633
                     /gene="hemB"
                     /locus_tag="VHF08_04140"
     CDS             2629..3633
                     /gene="hemB"
                     /locus_tag="VHF08_04140"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEX2067869.1"
                     /translation="MKTNNSNGNIGFPTVRLRRLRRSPAIRDILQETRLSVKDLICPV
                     FIKEGIEKTQVIESMPDIRRIPISEVIKNIESITDLGIRAILLFGIPSYKDDNATSAF
                     DDKGIVQQSTDIIHKHFGDSIAIITDVCLCQYTSHGHCGIIKNQKVDNDNSIATLGKV
                     AVSHAGAGADFVAPSAMMDGQVKAIREGLDDAGFSDTGIIGYSAKQASPLYAPFRDVA
                     HSTPEFGDRRSYQMPTSNAREALREIEFDINEGVDIIMIKPAIPYLDLIYQAKTTTTL
                     PVCAYSVSGEYALIKAAADEGWIDEDAVMTEFLTSIKRAGANMIITYYAKQMAKLLNG
                     "
     gene            3689..4969
                     /gene="hemL"
                     /locus_tag="VHF08_04145"
     CDS             3689..4969
                     /gene="hemL"
                     /locus_tag="VHF08_04145"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0042286 - glutamate-1-semialdehyde
                     2,1-aminomutase activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEX2067870.1"
                     /translation="MFSRSESLFNRAMNVMPSGVNSPIRFYEPYPFFAVSAKGSKIVT
                     ADHDIFIDYCMGYGALLLGHAHPTVTETVKNQLDIGNLYGVPTEKEVKLAELIEEVVP
                     CAEMTRIVNTGAEATMNAIRLARAFTKKKKILKFDGCYHGSYDYVLVNAGSGAGGFSQ
                     SKGSLEETTSQTLVIPYNDSEELDRVITKNDDIACVIIEPVLANMGLVLPEKQYLNDV
                     RKITHENDIILIFDEVITGFRLALGGASEFFGIKPDLATFAKAMGNGFPIAAIAGKKE
                     IMQQLAPLGKVYQASTYAGNPVSVSASISTIESLIMAKNEIYPSIAKTCDSLVNGIKD
                     ELEDAKLNFTLNTIGSMFQLFFSGEKVNDSKSAKKSNITNFRLLFDELLKKGIFIPPS
                     QFETCFVSHSHNEDDVYKTIEFYGDALRRIKDSS"
     gene            4966..5916
                     /gene="hemC"
                     /locus_tag="VHF08_04150"
     CDS             4966..5916
                     /gene="hemC"
                     /locus_tag="VHF08_04150"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEX2067871.1"
                     /translation="MTISLKVGTRGSKLAIVQTQIALAALRKSNPSIECEIVTIATRG
                     DVDKRPIFTIDQKGIFEKELNDAVMKGSIDFAVHSLKDLPSDLNDELILASIPKRARP
                     NDVLVNKKKLKLSDLPKGSIVGTSSLRRAIQIIRRRPDLNVKPIRGNVETRIKKSING
                     EYDAVVVAEAGLIRLGMKDVIVERFNIRDFMPSPGQGAIAIVCRKNNHRLIRLLKSIE
                     DKQSRAEVDAEREMSSKIEGGCRFPVGAIAVTSSDRRQMTLYASVFSADGIRSINLQK
                     SGSIKNPRKLGTMVAEMLIKEDVLKLSEDWHDAMERWNKK"
     gene            5913..6665
                     /gene="cobA"
                     /locus_tag="VHF08_04155"
     CDS             5913..6665
                     /gene="cobA"
                     /locus_tag="VHF08_04155"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004851 - uroporphyrin-III
                     C-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0019354 - siroheme biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HEX2067872.1"
                     /translation="MKNIGKVFLCGAGPGDPKLITVKAMELLKHCDVVLYDRLVSKDI
                     INQIPAESEKIYVGRAVGDSTAHQDNTNIQMVKFAKQGKKVLRLKGGDPFIFGRGGEE
                     AEFLFDNGIEFEIIPGISSAIGAAAYAGIPLTHRQYASSLAIVTGHEDENKVEPIVKW
                     DRLADAVDTIVILMGIEKLEQICCNLIAAGMSENTEIAIIENGTLKTQRVISGTLIDI
                     LHKVEYSRVKPPAIIVIGKVVTLCKKIAWFGK"
     gene            6662..>7306
                     /locus_tag="VHF08_04160"
     CDS             6662..>7306
                     /locus_tag="VHF08_04160"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: protein motif:HMM:NF014641.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004852 - uroporphyrinogen-III synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006780 - uroporphyrinogen III biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0006782 - protoporphyrinogen IX
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEX2067873.1"
                     /translation="MTYLSRSLFNKILAITRNDAAAEEFSQLVKMEGGKTIALPTIEI
                     VPRDPKVILEFINEINQEEHDYCAFMSQWAVNILFEHASIMKKTDQIISLLNNRTIIA
                     VGPKTREHLVNRGINVHLVPEKYSAKGIVELFSKMNLTSSKRIIIPRSSASNDFIARD
                     LGKIGIKVDELFLYDVQTANINVIWKDFISLLEKKRVDAIIFTSSSTALSFFEIM"
BASE COUNT         2523 a         1147 c         1478 g         2158 t
ORIGIN      
        1 ctcataaagt ttggtagctg taataaagct cttgtcaatt atgcccattt cctctaatct
       61 cattctcgcc ttgttgcaaa gataaatcga cttttctatc tacattccag tagcctcaga
      121 aatatcagct ggccctcgta caattaggtc tttgagagat ctaaatccag actcttctaa
      181 acgaccttta gtagctggtc ctatttcatc aatactatca agatcaaaag agtctgtctg
      241 gtggtcatct tcttgcaagg ctataattca aactattatg gtcattaatt agttttgagt
      301 tgaatttcgg cttcagttaa atgattagaa tagaacaatc aacatagttt tcttccattc
      361 ttacttgaaa gattcatata taagtattaa ctataaaaat cataagatat ttttttaatg
      421 ttaatttcat ttcattaaga attaagatta tatcaggatt aaattgtaat accataactt
      481 tgacacttta tacctgttaa gagtcttaag tacataaagt aatattgaat ttgatatact
      541 cataataaca atattctaag acatttgttt gaatatcaat agaaggttaa cggtacaagg
      601 tagttaaatg ggctttaatt gttaatgtaa cgattaaata aagaattcac ctcagtttct
      661 ctgttaatag ctattggtgt attaattgat tgttgacctg aatcttgata ataaatatgt
      721 catagtgata ggtggtggca cagaaggtgt aagaaaggta cgtggacttt taggccaaaa
      781 ctgtaaaatt atggttatag taaccgtttt aatcgatatt tgctcaatct agataaagat
      841 ggcaagatac aagttgttaa ggcaaaattg aaagatgcca acatacttga tgattacaag
      901 aatccatttc tgattttagc tgctactaat gataaatcgc tgaatcgcaa acttgttgac
      961 aaaggacgtc aaatgggttc atttgtatat gctgccgatg atcctctcta tagtgacttt
     1021 tcctatgcct ccatcattaa tattgaggga ataatgcagg ttgctatatc aacctctggt
     1081 aagagcccta taatggcacg aaaagttaga ataaaagctg aacggatttt aagaagagta
     1141 atcaaaagat cagatatcga aaatacaaaa ttgcaggagt ttgcgcgtat tgctgcaaaa
     1201 ccaaagatta aaactgttga taagagaaag gaattcctat attctattat tcatgaccaa
     1261 caaattcaga agcttattaa ggaggacaga tttgaagatg ctaaaagcac aacgctgaag
     1321 ctattggaga aatgggagaa taagaataaa taatgacatt atcatctagc atgatacaat
     1381 cattacaagt aataaatgcc agggtaacct tcagaaatgc tcctattcat cttctcgaaa
     1441 aatttgcctt cattgatatc gattatgcat ataaaaagat tatagaaaat tgcaacatca
     1501 gagaatgtgt tatcattcag acatgtaaca gggttgaggt tttcgctgcc ggcacaggtc
     1561 cttatgaaaa aaaattgcta gaagtttgga gttcgataat tggcctacct gttggtgaaa
     1621 tagaaaacac tgccgaaatt agcaaagata gagatgttgt tcttcacttg ctgaaactgg
     1681 catcaggact ggattcatta gtgataggcg aagatcaaat actaggtcag ataaagcgag
     1741 catttgactt tgctaataaa aaccgttatg tcggctccac tcttttggtt atgtttgata
     1801 gggcagtaaa agtcggtagc aaagttagga ccatcacatc tctcaataaa ggaagcgttt
     1861 caattggatc aattgcagtt aatttagcag aagaatacat tgaaaatcta aaaagtaaag
     1921 gtattttact tataggaaca ggagaaggtg caagtctagt agccaagtca ttaaaacaac
     1981 gagatattaa ttttctagtt acaagcagga catttcaaag ggctaagtca tttgctgata
     2041 ctgtaggagg tgagcctatt ccatttgaga aagcacttga gatactacat gagattgatt
     2101 taatctttgt ttctactact gcaccatatt acttagttac atatgatagg attgaaaagg
     2161 ccatgagtaa acgggaaaat gggatgatga ttttagacct ttcaaatcca agaactgtag
     2221 aagaaagagt tgcatcagta agtaaagtca aattgataaa tatggatcaa atcgcagaga
     2281 tagtagaaaa gaatagacgt tctcgcaaaa atgaaattgg ttcagcccag agattaattg
     2341 atatcgaaat gaattccatg tatactattt ataaaagaaa aaaggccgac cccattgtgg
     2401 attctgtttt caagaacgta gatactataa gagatcgcga actcaaaaaa gcattttcta
     2461 ttttaggaaa aaaaatagga cccgaagaat acaagataat tgaaaagctt tcatatgcta
     2521 ttgttgaagg gattctttct tctccaatga acaaccttag aaaagagctg gaaaagtgta
     2581 acgaaaaaga cgatgatttt atgaagttca tcataaagat gttcagctat gaaaacaaat
     2641 aacagtaatg gaaatattgg atttccaact gttaggttgc gtcgtttaag acgaagtcct
     2701 gcaattcgcg atattctgca ggaaacccgc ctttcggtta aggatctaat ttgtccggta
     2761 tttattaaag aaggaattga aaaaactcaa gttattgaat cgatgcctga tatacgaaga
     2821 atacctattt ccgaggtaat caagaatata gagtcaatta ctgacctcgg aatcagagca
     2881 attcttcttt ttggcattcc atcttacaaa gatgacaatg caacttctgc ctttgatgat
     2941 aaaggaattg tacaacaatc tactgacatt attcacaaac actttggaga cagtattgcc
     3001 attattacag acgtatgttt atgtcagtat acctctcacg gtcactgtgg aataataaag
     3061 aatcaaaaag tagataatga taatagtata gctactttag gaaaagttgc cgttagtcat
     3121 gcaggtgcgg gagcagattt tgttgctccg tcggctatga tggatggcca agtgaaggct
     3181 attcgtgaag gtctggatga tgcaggtttt tctgatactg gaattattgg atattctgca
     3241 aaacaagcat cgccgcttta tgctcctttt agagatgtgg cccattcaac gccagaattt
     3301 ggcgacagaa gaagttatca aatgccaact agcaacgcta gggaagcact tcgagaaata
     3361 gaatttgaca ttaacgaagg cgtggacatt ataatgataa aacctgccat tccatatctg
     3421 gatcttattt atcaggctaa gactacgact actctgcctg tctgcgctta tagtgtctct
     3481 ggagaatatg ctttgatcaa agcagcagca gacgaaggat ggattgatga agacgccgta
     3541 atgactgagt ttttaacatc tataaagaga gcaggcgcta atatgataat tacttattac
     3601 gcaaagcaaa tggccaaatt actgaatggt tgatttgatg tcacacgata caattataat
     3661 gttttgtagg caagaactct actattagat gtttagcaga tcagaatctt tgttcaacag
     3721 agcaatgaat gtgatgccat ctggagttaa tagccctata cgtttttatg aaccatatcc
     3781 attttttgca gtttctgcca agggtagcaa gattgttaca gctgatcatg atatatttat
     3841 tgattattgt atgggatatg gtgcactttt acttggtcat gctcatccta cagtaacgga
     3901 aacggtaaag aatcaacttg acattggaaa cctctacggt gtgccgactg aaaaagaagt
     3961 aaagctagcc gaactgatag aagaagttgt tccttgtgcc gagatgacaa ggattgtaaa
     4021 taccggcgca gaggcaacta tgaatgctat tagattagca cgcgcattta caaagaagaa
     4081 aaaaatttta aaatttgatg gttgctatca tggttcttat gattatgtct tggtaaatgc
     4141 tggctcgggt gctggcggtt tctcgcaatc taaagggagt ctagaagaga ccacatctca
     4201 gactctggta ataccttata atgattcaga agaattagat cgagtaataa cgaagaatga
     4261 tgatattgcc tgtgttataa tagaaccagt attagcaaat atgggtcttg tattaccaga
     4321 aaaacaatat ctcaatgacg tcagaaagat aacacacgaa aatgacatta ttctaatatt
     4381 tgacgaagtc ataactggat ttagacttgc tctaggcggc gctagcgaat tctttggaat
     4441 taaacctgat ttggcaacat tcgccaaggc aatgggaaat ggttttccta tagcagcaat
     4501 tgccggcaag aaagaaataa tgcagcaatt ggctcctcta ggtaaagtat atcaagcgag
     4561 tacatatgct ggcaatccgg tttccgtttc agctagtata tctaccatcg aaagtctgat
     4621 tatggcaaaa aatgaaatat atccaagtat cgccaaaact tgtgattctt tagttaatgg
     4681 aattaaagat gagttagaag atgccaaact gaactttaca ttaaatacaa ttggatcaat
     4741 gttccaattg ttctttagtg gtgaaaaagt aaatgattcc aaaagcgcga agaaatctaa
     4801 tattacaaac ttcaggcttc tatttgatga attgcttaag aaaggtattt tcattccccc
     4861 ttctcaattt gagacctgtt ttgtttccca ttcccataat gaagacgatg tatacaagac
     4921 tatagaattc tacggtgatg ctttacgcag aataaaagat agctcatgac tataagttta
     4981 aaggtaggta caagagggag caaacttgct attgttcaga cacaaatagc attagccgca
     5041 ttacgaaaat ctaatccctc tattgaatgt gaaattgtta ctattgctac cagaggtgat
     5101 gtggacaaga ggcccatatt tacaattgat caaaagggaa tttttgaaaa agagttaaat
     5161 gatgctgtaa tgaaagggag tattgatttt gctgttcata gtctgaaaga tcttccgtct
     5221 gatcttaacg atgagctaat tcttgcatca ataccgaaac gagcaagacc taatgatgta
     5281 ctagttaata aaaagaaact gaaattgagc gatcttccta aaggttcgat agtgggaact
     5341 agtagtttaa ggcgagccat tcagataatc agaaggcgtc cagacttaaa cgtcaagcca
     5401 attcgtggaa atgtcgagac gagaatcaag aaatcgatta atggagaata tgacgctgta
     5461 gttgtcgcag aagcaggttt aattagactt ggaatgaaag atgtcatcgt agaaaggttt
     5521 aatataagag attttatgcc atcacctggt caaggtgcaa tagcaattgt ttgtagaaag
     5581 aataatcatc gattaattag actgttgaag agtatcgagg ataaacaatc tagagctgaa
     5641 gttgatgctg aacgtgagat gtctagcaaa atagagggag gatgcagatt tcctgttggt
     5701 gccattgcag ttaccagctc tgatcgcagg caaatgactc tgtatgcatc tgtgttttca
     5761 gcagatggga ttagatctat caatctgcaa aagagcggaa gtataaaaaa tcctcgtaaa
     5821 cttggaacaa tggttgccga gatgcttata aaagaagatg ttctaaaact ttcagaagac
     5881 tggcacgatg caatggaaag gtggaataaa aaatgaaaaa tataggcaaa gtgttccttt
     5941 gcggtgcagg acccggtgat ccaaagctaa tcaccgtgaa agcgatggaa cttttgaaac
     6001 attgcgatgt tgtactttat gatagattag ttagtaaaga cattatcaat caaattcctg
     6061 ctgaatccga aaaaatctat gttggaagag cagtaggtga ttcgacagct catcaggaca
     6121 atacaaatat ccaaatggtg aaatttgcta aacaaggaaa gaaggttttg cgactgaagg
     6181 gcggagatcc attcatcttt ggaagaggag gagaagaagc agaatttctt tttgataatg
     6241 gtattgaatt tgaaataatt cctggaattt cttctgctat aggggctgct gcttatgctg
     6301 gaattccatt aacacataga caatatgcat catcccttgc aattgttact ggtcatgaag
     6361 atgaaaataa ggttgaacca attgttaaat gggatcgatt agcagatgct gtagacacca
     6421 ttgtaatact catgggaata gagaagttgg aacagatatg ctgcaatctg atagctgcag
     6481 gaatgagtga aaatacagag attgccataa ttgaaaatgg aacccttaaa acacaaagag
     6541 tgatcagcgg gactcttatc gacattctac ataaagttga atactctagg gtcaaaccac
     6601 ctgccattat tgtaattggt aaagttgtta cattgtgcaa aaagattgca tggtttggta
     6661 agtgacctat ctgtctagaa gtttgtttaa taaaatactt gcgataacaa gaaatgatgc
     6721 tgctgctgag gaattttcac aacttgttaa aatggaagga ggtaagacta tcgccttacc
     6781 aactatagaa atagtgccaa gagatccaaa agttatttta gaatttataa atgagataaa
     6841 ccaagaagaa catgattatt gtgcgtttat gagccagtgg gctgtgaata tattatttga
     6901 gcacgcaagt ataatgaaga aaactgatca gattatctct ctattaaata atagaactat
     6961 tatagcagta ggaccgaaaa ccagagaaca tcttgttaac cgtggaataa atgtccattt
     7021 ggttccagaa aaatattctg ccaagggaat agtggaatta ttctcaaaaa tgaatctcac
     7081 atcatcgaaa agaattatca ttccgcgaag tagcgcatca aatgacttca ttgccagaga
     7141 tctaggcaag atcggtataa aggtagatga gctattcttg tatgatgtgc aaactgccaa
     7201 tataaatgtc atttggaaag attttatttc gcttttagaa aaaaaaagag tagacgccat
     7261 tatctttaca agttcctcta cagctttgtc attttttgaa atcatg
//
LOCUS       DATAAS010000255         3517 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5128795, whole genome shotgun sequence.
ACCESSION   DATAAS010000255 DATAAS010000000
VERSION     DATAAS010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3517)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3517)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3517
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5128795"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(135..764)
                     /locus_tag="VHF08_04165"
     CDS             complement(135..764)
                     /locus_tag="VHF08_04165"
                     /inference="COORDINATES: protein motif:HMM:NF018446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022841 - potassium ion leak channel
                     activity [Evidence IEA];
                     GO_process: GO:0071805 - potassium ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HEX2067874.1"
                     /translation="MDDDKNIHGKIRLEHVISFADAIFAFSITFMAISIQIPDLPHND
                     NIIQTELIAKLLELRPQFETYVISFFIIGIYWISYHQVFNNITGSHTIMIWLNLLFLF
                     FITLISFATGLQINYGPYHIIFIIYALILTITGSLLASIWLHAKKNNLIDKRLSRIQT
                     RNIFLQSLLPPTVFVISILISFVNIQIAYYFWMVIIPGKIILRKISYPY"
     gene            complement(1172..1345)
                     /locus_tag="VHF08_04170"
     CDS             complement(1172..1345)
                     /locus_tag="VHF08_04170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067875.1"
                     /translation="MINYCVVCPVCESEFTSYEKYINHVVQKHENQPSLRMKAKIIKK
                     EEDNTDYLQTGET"
     gene            1776..2201
                     /locus_tag="VHF08_04175"
     CDS             1776..2201
                     /locus_tag="VHF08_04175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067876.1"
                     /translation="MSNNNTITSKEDSLSNTDFNFKYTESGGLTARYLLISYDSKTNV
                     LASSTDISGSNISQKPLSDADKADLKNTITESEFFKTKTDYPPEKEDDPSLVSFNLTA
                     TIEDKTHTTAWTNTSKEIPNGITKIVDEIKKVVAKEKAV"
     gene            complement(2405..2908)
                     /locus_tag="VHF08_04180"
     CDS             complement(2405..2908)
                     /locus_tag="VHF08_04180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067877.1"
                     /translation="MDMTSTCVMCGEKSQDYLIECYCCGNFYCSEKCKVQYHQKKLHH
                     KWREYKDIYEEIMKSDPQVRLVTICDNNGNIMYSDQREGITNLLTREESKKSLELAVN
                     AWKIRSKLAPKIGKGKYVLAEYEKMKRITMPLKDNHLLYVTTEPEADHTSIIRKIEEI
                     CKRKENY"
BASE COUNT         1206 a          541 c          514 g         1256 t
ORIGIN      
        1 gcattcagtt agcaagttat ttggttttat tatctttata atattataaa atttcaacca
       61 agggtcagat gatgattaac aagaacaaga acgagaacta atacaacaat actctattgc
      121 acaaaataca aatgttaata cgggtacgat atcttgcgta gaattatctt tccagggatt
      181 attaccatcc aaaagtagta agcaatttga atattaacaa aagaaataag aatcgaaatt
      241 acaaatacag ttggcggaag aagggactga agaaaaatat ttcttgtttg tatacgactt
      301 aatcttttat caattagatt attcttcttt gcgtgtaacc aaattgatgc tagcaatgat
      361 ccagttatag tcagaattaa tgcatatatt ataaatataa tatgatacgg tccataattt
      421 atctgcagac cagtggcaaa ggaaataagc gtaatgaaga acaagaataa aagatttagc
      481 catatcatta ttgtgtgaga acctgtaata ttattgaaaa cctgatgata tgaaatccag
      541 taaattccta taatgaaaaa gctaataaca taagtctcaa attgaggacg caactctaat
      601 aatttggcaa ttagctctgt ttgtatgata ttatcattat ggggtagatc aggtatttga
      661 attgaaatgg ccataaatgt tattgaaaat gcaaaaatag catcagcaaa tgagattaca
      721 tgttctaatc ttattttacc atgtatattt ttatcgtcat ccataacaag atagttttga
      781 atacaacaag aaacaaatac ttgtcgttat aaaattgtca tcgtcttctt tctctttctt
      841 tccaaataca tacaaataca tttgcaattt tttattatta ttataaataa gaatattatt
      901 gctattatta ttccctgaaa tactatgttt cttttcggga ctgtaaaaga aatgctctat
      961 tatcatagag attgatatat agtaaatatt cttcatgttg ttagatgcct tgttggcatt
     1021 gttcagttaa ttttcattac tgattttact aagagttata aaaatgaata tacatatgta
     1081 tatgtgtacg tatttagtct acggctgagc tttttgacaa tgaattcact tcaaagaaga
     1141 tttctaatac atgtaaaaca ttgaattaaa gttatgtttc tccagtttgc aaatagtcag
     1201 tattatcttc ttcttttttt atgatctttg ctttcattcg gagagaaggt tggttttcat
     1261 gtttttgaac aacatgatta atgtattttt catagctagt gaattctgat tcacatacag
     1321 gacatacaac acagtaattg atcaatatgt aattatattc gctcataatg gatatgtata
     1381 ttattatcat catcgtcgtc gacctttcta tattcttctc aagtctacct tagcaattag
     1441 gtgatgaaat tcatttagac ttctatctct tttcttaata atgatattaa taagaatatc
     1501 ctagtttgtt aatcaacatt tagcatgtaa attgagtata tattgtaccg tcctcagcag
     1561 cctatttcct gttttgactg acttgacgac ggatctgacc gcctagatga ccagattgat
     1621 atttactaaa tgacctgtag tggattggaa gtttttaaaa tgatgagaat tgatattaat
     1681 ctgcaagatt tgatatattt gtaaaataga ttttttggtt tgatgaatta ctataaagat
     1741 ataaaaacct ctatgacgtt ttctctagat agagtatgtc taataataat actattacta
     1801 gtaaggaaga ttcattatct aatacagatt ttaacttcaa atatacagaa tcaggcggct
     1861 taactgcacg ttatttgcta atatcctatg attcaaagac aaatgttctt gcttcctcta
     1921 cagatattag tggcagcaac atatctcaaa aacctctctc tgacgcagat aaagctgact
     1981 tgaaaaatac aataacagaa agtgaattct ttaaaactaa aactgactat cctccagaaa
     2041 aagaagatga tccaagtctt gtctcattta atctaactgc tacaatagag gataagacac
     2101 atacgacagc atggacaaat acatccaaag aaataccaaa tggtataaca aagatagttg
     2161 atgaaattaa aaaagtagtt gctaaagaga aagcagttta gtttaattat tagtattata
     2221 tattaaaata ggctttttta actttaaaaa gagaagccaa caaattctat ttttggcaaa
     2281 aagcaagata tagtttctct ggccttacat caatatcctt tcttaaactg tggcttcgag
     2341 atttcattct cgacatagat attgatattg tgctaaatac ttggtcaaat acataggcat
     2401 tatttcaata attttctttt cgtttgcaaa tctcctcaat cttacgaatt atactcgtat
     2461 gatcagcttc tggttctgtt gtaacataga gaagatggtt atcttttaac ggcatagtga
     2521 tacgtttcat cttttcatat tcagccaata cgtattttcc tttaccaatt tttggtgcaa
     2581 gcttgctgcg tattttccat gcatttaccg ccagttcaag tgattttttg ctttcttcac
     2641 gagttagcaa atttgttatt ccttcacgtt gatcagaata cattatatta ccattattat
     2701 cacatatagt aactagccta acctgaggat cgctcttcat aatttcttca taaatatctt
     2761 tatactccct ccatttatga tgaagctttt tttgatgata ttggactttg cacttttcag
     2821 aacaatagaa atttccacag caataacact ctatcagata atcttgagac ttctcgccgc
     2881 acattacaca agttgaagtc atgtccatgt agataatatc aaagaagtag aataaaagct
     2941 attttatttt tatctttttt cttttatata ataatattac aagaaaatat gtataatgat
     3001 ccaaatttgt ttggagagat atttacaata tacttacaaa aatcataaaa gaaatgcaac
     3061 atatctttct aggtcttact ccgatatcgt tgcgcagtgt aagtatagtc atcgaattta
     3121 attccgagct taattctttg atatgatcat taactgtgtt gagatggttc ttctcagtat
     3181 agaccttgat gtcttcagtt acttttcttg caatacagaa gtcatctcat aaggatatta
     3241 tgctttgtcc tagtttccga tatttaccat tgtgataaaa cagaggctgc ataatctcat
     3301 ctgctgatat ctaaacagct tccccaataa acataatatg atcttctaat tcatcatgct
     3361 ttactaactt acattcagca ttcatcgtcg cagctgatat gatttgacta ttaatggtgt
     3421 tgtactcact aatgctatcg aatttataga atggtcaaat aagaaattga actttttaca
     3481 aaagaaagaa gaagaagaca acgaagatta ctgatta
//
LOCUS       DATAAS010000256         1890 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4050882, whole genome shotgun sequence.
ACCESSION   DATAAS010000256 DATAAS010000000
VERSION     DATAAS010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1890)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1890)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1890
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4050882"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..184
                     /locus_tag="VHF08_04185"
     CDS             <1..184
                     /locus_tag="VHF08_04185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067878.1"
                     /translation="YLIYNYKLDSFYPFVPTNTTINQRRRNNQAEMKIMAAVTDDKLP
                     FEKDMTRWYPIWDLPL"
     gene            1022..1648
                     /locus_tag="VHF08_04190"
     CDS             1022..1648
                     /locus_tag="VHF08_04190"
                     /inference="COORDINATES: protein motif:HMM:NF013718.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEX2067879.1"
                     /translation="MISPKFNHTANSLLISKDTYAFLKINNSHHPAFNQFMILLTEYG
                     REVVWSIAIILLFIIGGWTGKKTALVMGLAMLVLIPVVNVAKEIVARPRPFIPPTDFL
                     IAADSKYAFPSGHATIVSAGAAVVLMLFRDSTRKLAISLSLSTEAALVCFSRVYVGGH
                     YPLDVFGGIFLGVGVALLFIAVTNYGEIVMLLLERISKKISKKILKKS"
BASE COUNT          639 a          290 c          293 g          668 t
ORIGIN      
        1 ttatttaatt tataactata aacttgatag tttttatcct tttgttccta ctaatactac
       61 tattaatcaa agaagaagaa ataatcaagc agagatgaaa attatggctg ctgttacaga
      121 tgacaagttg ccatttgaaa aagatatgac tcgttggtat cctatttggg acctacctct
      181 ttgaatattc tgggatcata tagaataata cttcattaaa aaatcgatat cctcagcaat
      241 ttgcaagaca atgattgtgt taaaaataat atatatttac taataggagt tatactacaa
      301 catgtttttt ctatagttat ctatgtctca ttcttttcct tcacacaagg aacatttacc
      361 atattgaaat cgcattctac agtttattct ctcattgcag tcatatagga ttccacattt
      421 tttacactga tgcaggcaga tctgtgttgt ctgtgtgatt aactccaata attaaagtat
      481 atttacatac attttaagac aaactatcaa tttttaaagt tgctaagctt atgacaatta
      541 aattgatatt ataaatagaa aattgtttgt atattattac aaagataaaa tgacactttt
      601 gaaaattctt atcaatagct tttttccctg agcctctatt gtgaatatgg ccagtcatta
      661 gataaataca caattagata aataatgcat ttagtgaatc aaatagtatc ttttaataat
      721 ttgaccttgg aattaatctc tagacaaaga tttgttcgat gaggtttgag agctttgggt
      781 atagcacgaa gggcccagca aatcaatctc atatcatgaa taacatcaaa ggttgtaacc
      841 aagtcagtct taaaaaattg ttttcacaat ttgctgtgtc aatagtgaga tactagataa
      901 taaaattata caacttttta aagagtctcc tctgctttat gttgaagaag aagcgatgaa
      961 caaatattac ctccttggat tttctattct tcttatattc ttcttcatta tattttctct
     1021 aatgatttca ccgaaattca atcatactgc aaactcttta ctcataagta aagatacata
     1081 tgcttttcta aagattaaca attcgcatca tcctgctttt aatcagttta tgatactatt
     1141 aactgagtat ggaagagaag tagtttggtc tattgcgata atactcttgt ttataattgg
     1201 aggttggaca gggaaaaaga cagctctagt aatgggatta gcaatgcttg ttcttatacc
     1261 agtagttaat gtagcaaaag aaattgtggc cagacctaga ccatttattc ccccgacaga
     1321 cttcttgatt gcagcagatt caaaatatgc ctttccatca ggccacgcta caatagtatc
     1381 tgctggtgca gcggtagtct taatgttatt tagggattcg acaaggaaac ttgcaatatc
     1441 tttatcattg tctacagaag cagctcttgt atgtttctcc agagtatatg ttggtggtca
     1501 ttatcctttg gatgtctttg gtggcatatt tctaggagtt ggagtagctc tgctattcat
     1561 agctgtcaca aactatggag aaatagtcat gctattatta gagaggatat caaagaaaat
     1621 atcaaagaaa atattaaaga aatcgtaaga taaatttata ataatagtag attaagaata
     1681 ataacatttt cttctaaata actagcacaa atagtcaatg gttacagtta tctttgaact
     1741 tcatatactc tattgaaaac ggttcttcta taatttcaat aagtggtgtg tcctttaaag
     1801 aatatacctg ctaacatcta acaacagcta ttacaagtgg tttaaatgcc tattgaaata
     1861 aaggaattct tcctaaaatc tgttgttgat
//
LOCUS       DATAAS010000257        11168 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2438789, whole genome shotgun sequence.
ACCESSION   DATAAS010000257 DATAAS010000000
VERSION     DATAAS010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 11168)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11168)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11168
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2438789"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(397..1059)
                     /locus_tag="VHF08_04195"
     CDS             complement(397..1059)
                     /locus_tag="VHF08_04195"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: protein motif:HMM:NF018242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HEX2067880.1"
                     /translation="MEKTTALVMLSGGLDSATCLYWAKKNFSEISAITFNYYNRIENE
                     KRAAAELARRANIVNFLEINIPFIKEFSDFNNNNHITPNYDRRWSSYIPARNLIFYSI
                     AAHYAEFLDIKWIIGGHNIHDGTFFIDATKDYIEKLNLLIKRGCLFRNDDPCVILIPL
                     AEMDRKTIINLAIELNVPIELTWSCHNKYKTHCGQCYACMQRIEAFSSLGIKDPVFFK
                     NT"
     gene            complement(1063..1878)
                     /locus_tag="VHF08_04200"
     CDS             complement(1063..1878)
                     /locus_tag="VHF08_04200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEX2067881.1"
                     /translation="MERVVLDNDIKYFDSTGNLFRTRAELSISKMLSFLGQNFEYDVI
                     LKFKNDDIVNVDFKIDDKYIEVIDCENDVNKFLRIRRELPEIKIIAVGHSKYAGKVNE
                     LDSLFFFNSDYHQTGSIFIEDPSLAFDYAHILPLVEKCSILHGHTSTVMVEIIGDMKN
                     NLIIDFGEAKRIIKETLSILDHKFFINTKYLKKEDDIYYHISFEGPRGFFSLQLPKMT
                     TFLLPGEATVENLSTEIIKLLAPKMPPTVEALGIYVYEGVNKGAHIIAEIKKG"
     gene            2122..2424
                     /locus_tag="VHF08_04205"
     CDS             2122..2424
                     /locus_tag="VHF08_04205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067882.1"
                     /translation="MSEGQEREFEEGAAGTKSDRKKDPLKDYDEKEAMSPAKIKEHEP
                     TAVKREMTEKITEPGQTGTSPEEATEKARRSGMTKGTAGATETGSEYEQGAAGSNK"
     gene            3093..3392
                     /locus_tag="VHF08_04210"
     CDS             3093..3392
                     /locus_tag="VHF08_04210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2795 domain-containing protein"
                     /protein_id="HEX2067883.1"
                     /translation="MSEDKNQETQKMVSEQGGVEGQRKEVNVEDYSKAGSIGQILKDM
                     EFPADKNKIVQYVQQRQSASADNHENKEILSKLQNMEDKQYQNVSEVTKAAGLVY"
     gene            3643..4410
                     /locus_tag="VHF08_04215"
     CDS             3643..4410
                     /locus_tag="VHF08_04215"
                     /inference="COORDINATES: protein motif:HMM:NF012936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase C-terminal domain-containing
                     protein"
                     /protein_id="HEX2067884.1"
                     /translation="MLNDLKKALFEAVLDTINKNSSSASSSLAVAFSGGIDSSLLAKV
                     CKDIGMKVTLLTIGFQISQDIEFSKQIALKLDLPHKISVIQPEQFQKDLLYIQQKIAC
                     RNISHIENCIAYFYIARMANQNNLRLILTANGCDELFCGYNKFRLIYDEGKTRIMDLM
                     NERIANEHVLIEEINKITTEFGVLTKQPFFSQKFIDFAKDIPIEQKITGSNDFIRKHI
                     LRKVALSIGVPRESAMKPKKALQYSSLIHRNFKRTNK"
     gene            complement(4508..5890)
                     /gene="purB"
                     /locus_tag="VHF08_04220"
     CDS             complement(4508..5890)
                     /gene="purB"
                     /locus_tag="VHF08_04220"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004018 - N6-(1,2-dicarboxyethyl)AMP
                     AMP-lyase (fumarate-forming) activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEX2067885.1"
                     /translation="MPILPIDSGRYGSKEIKKIFEEEQHLQYQLDFEAAVSAAQAHIK
                     MIPENASDDIIKKAKSGKITIEKVKELEAVTEHDTAAVVEALSEQCSEKSRPWIHYGL
                     TSNDILDTAISMQMRDAFSIIESKILDIATALTDKALEFRTLPAVGRTHGQHASIIAF
                     GLKFAVWAAEMAKHIERIEEGKKRFLLCKTLGVVGTGSLMGNRALDVQRRVAMDLGLY
                     AVEAATQVIPRERHAEMQFLITLVACTLDKIAIEIRNLQRTEIGEVAEPFRRGQIGSS
                     AVPVKRNPIKSERVSSLAKILRSLVNVAMENIGLWHERDLSNSANERFTLPMAVILLD
                     EMLNSMKSIIIGLNVNTKRITSNLDITKGQIYAEFVLEALIKKGVPRFEAYRNIQRVA
                     FAALEREEDFFDALRKDSNLSKSLTPIELKGIFNAKNHLSASSKIIESVVRKVKATNK
                     KYHNNNNQLS"
     gene            6320..6598
                     /locus_tag="VHF08_04225"
     CDS             6320..6598
                     /locus_tag="VHF08_04225"
                     /inference="COORDINATES: protein motif:HMM:NF023174.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3303 family protein"
                     /protein_id="HEX2067886.1"
                     /translation="MVAATFLVFYRFKAMSKDEAQKANNEWRELKNSLPSGIELVGEY
                     DHAWGTEYNGFLIFEADSSDSFLDWWSSFKDKVRWYVEQTHTIVARRR"
     gene            complement(7019..7213)
                     /locus_tag="VHF08_04230"
     CDS             complement(7019..7213)
                     /locus_tag="VHF08_04230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067887.1"
                     /translation="MSSSEELDETFQKRISEAEAELRDDTQSLNLLEFLSDRADMTNI
                     VLGRDFALQVLEGDADKLER"
     gene            complement(7630..7872)
                     /locus_tag="VHF08_04235"
     CDS             complement(7630..7872)
                     /locus_tag="VHF08_04235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system HicB family
                     antitoxin"
                     /protein_id="HEX2067888.1"
                     /translation="MTDNNNNGKTTIISIDVQQPNCHDCPPATYHVTTAKEDDGAYSG
                     KCIELPGAVSQGKSIEELQVNMRAAIQSIVKSYDHA"
     gene            complement(7869..8111)
                     /locus_tag="VHF08_04240"
     CDS             complement(7869..8111)
                     /locus_tag="VHF08_04240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067889.1"
                     /translation="MFASKSLEVITKRTYTTQIIWNMYAYGISGTKHSKLPDNKIDFT
                     TYLSPKEQIIYPSHMGVDAMSALAKKIDGMVKKNVR"
     gene            complement(9407..9835)
                     /locus_tag="VHF08_04245"
     CDS             complement(9407..9835)
                     /locus_tag="VHF08_04245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HIT domain-containing protein"
                     /protein_id="HEX2067890.1"
                     /translation="MFDPNCIFCNIADGKIKARIISQNNKAIAFLDAMPLSIGHTLVI
                     PKIHYKKVQQMSREDSSAVFDLLWHVSFAVEKAAEVNASTIAIHNGREAGQEVPHVHI
                     HIIPRKTGDGAGPVHSMFKKRPVSNPEEMDLILDKTKRML"
     gene            complement(9989..10405)
                     /locus_tag="VHF08_04250"
     CDS             complement(9989..10405)
                     /locus_tag="VHF08_04250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6766 family protein"
                     /protein_id="HEX2067891.1"
                     /translation="MVTSTNIPIGNKLKNSIMTKSKRGYLWVTLTLFVITVTAHWIFA
                     WFAYYQDQVEHNQSIDIGNYLNATLRDTMENWQSEFLQLIWQVAGLSFLWYVGSPQSK
                     EGNDRQEEKLDLIISKIDPSNAKKLLEDLEKKYPKK"
BASE COUNT         3767 a         1869 c         1782 g         3750 t
ORIGIN      
        1 attatgagga tttatttaat aaaagaagtt aagatttaat acgatattat gtagtatgtg
       61 gatatgttgt ctgtgacgga cacactatta gaaatcttct ctctctctct cattttccta
      121 tatcaattgt tagttctacg atgaccatgt ctataatatt ggatccaggt aaatgataag
      181 aaaagttgta tgttactcta taatgacaat ttcgaccttt gaatctctat aatatcaact
      241 gaggtataat tcttctttct aatatatttc atggctgatt ttaagataaa aaactataaa
      301 tttaaaaaag tgaatttaat cactagagaa tgcgataccg caatagatca gactttatgc
      361 aattatgtaa ttgctcctta ttctctatca taacaattat gtgtttttaa aaaagacggg
      421 atcctttatg cccaacgagc taaatgcttc tattctctgc atacatgcat agcactgtcc
      481 acaatgtgtt ttgtatttgt tatggcagct ccatgtcaat tcaataggta catttaattc
      541 aattgccaga ttgattatag tttttctatc catttcagct aaaggaatga gtatcacgca
      601 aggatcgtca ttgcggaaca aacatccacg cttaattaac aagtttagtt tttctatata
      661 atcttttgtt gcatcaataa aaaatgttcc atcatgaata ttatgtcccc ctataatcca
      721 ttttatatca agaaattcag catagtgtgc agctattgaa taaaatatta ggttccttgc
      781 aggaatatat gatgaccatc ttctatcata gttgggtgtg atatgattat tattattaaa
      841 atcagaaaat tctttaataa agggaatgtt gatctcaaga aaatttacaa tatttgctct
      901 tcttgctaat tccgctgcag cccttttttc gttttcaatc ctattgtaat aattaaatgt
      961 aattgcggaa atttctgaaa aatttttttt agcccagtaa agacaagtgg cagaatctaa
     1021 tccaccagag agcattacaa gggcagtggt tttctccatc ctttaccctt tttttatttc
     1081 agctattatg tgtgctccct tatttactcc ttcgtaaaca tatatgccca atgcttcgac
     1141 agttggtggc atctttggag caagcagttt aattatttct gttgaaaggt tttctacagt
     1201 agcttcacct gggagtaaga aagtagtcat cttcggcaat tgtagactga aaaagcctcg
     1261 tggtccttca aaagatatat gatagtaaat atcatcttct ttcttcagat attttgtgtt
     1321 aataaagaat ttatggtcaa ggatacttaa tgtctcttta attattctct tggcttcacc
     1381 aaaatcaata ataagattat ttttcatgtc gcctattatt tcgaccataa cagtggatgt
     1441 gtgcccatgc agaatagaac atttttcaac taatggtaaa atatgtgcat aatcaaaagc
     1501 aagagatgga tcttctatga atatagaacc tgtctgatga tagtcggaat taaagaagaa
     1561 caaggagtct agttcattga ctttaccagc atatttagag tgaccaactg caataatttt
     1621 aatttctggt agttctcttc gtatacgaag aaatttatta acatcatttt cacaatctat
     1681 gacttcgata tatttgtcat ctattttaaa atcgacgttg acaatatcgt catttttaaa
     1741 ttttaatatt acatcatact cgaaattttg tcctaaaaaa gatagcatct ttgagataga
     1801 taattctgct ctagttcgaa acagattacc cgtgctatca aagtatttaa tatcattatc
     1861 aaggactact ctttccatat gaatatctaa ttaaaaaagt actcattgcg acttataaac
     1921 tgtttattgt atattttgga aaaaactttt atcagataaa gcgtattttg actaaagtta
     1981 cattacatta atacttatct cataaaattt tattggaatg ttaatttcta tcaattatca
     2041 atatcttctc gttaatgaaa atacgtgact cataactata gccatataaa attaatatac
     2101 caggctagta ttgcaacaac tatgagcgaa ggacaggaaa gagaatttga agaaggtgcc
     2161 gcaggaacaa agagtgatag aaaaaaagat cctctcaaag actatgatga aaaagaagca
     2221 atgtcgcctg caaaaataaa agagcatgaa ccaactgctg taaaaagaga aatgacagaa
     2281 aagattacag agccaggaca gactggaaca agtcctgaag aagcaacaga aaaggcaaga
     2341 agaagtggca tgactaaagg tactgcaggt gcgactgaga ctggtagcga atatgaacaa
     2401 ggtgcagcag gatcaaacaa ataagtaaag aacatcagta tcttaatatt tactcttatc
     2461 attatttttc tttataacta tacgagtaac caatcatcac tagtctgcag cgtggatcct
     2521 tattttaatc tagttacact tgatgtttaa ccttttcata ttatttttat tattttcaat
     2581 tgactctatt cttggattct caagtaagga gaaaaagaga tcagtgccta tcatatacat
     2641 ttaatgcttt acactaattt atctactact gaggatctgc aagccatttg tatattatct
     2701 atattacata caaagaacac aagaaaactt cagaaattca agatatttta tattattcct
     2761 ttttattttc tctacaagca atatattttc cctctactac gaagaactat caccacctta
     2821 ataagaaaaa tagtttttct aggatactgt cctaaggatt cagttgtagt atttctattc
     2881 gcttgagtgt tttattctga ttatttatag caaaagaagt ttttgaacct acttactatt
     2941 tgccaccgtc gattcagtct ttgactgtta taatatatat atatatttta tcgctggctc
     3001 attcttttgc cttatttcaa ctaactgatt agagttaaat cataaaaaat tatttataac
     3061 attaaaaagg tatttggaga taatattatc taatgtcaga agataaaaat caagaaacac
     3121 agaaaatggt aagtgaacag ggaggagtag aaggtcagag aaaggaagta aatgtcgaag
     3181 attattcaaa agctggatct ataggtcaaa ttcttaaaga tatggaattt ccagcagaca
     3241 agaataagat agttcaatat gtacaacaac gacaatctgc ttctgcagat aatcatgaaa
     3301 ataaagaaat attgtcaaaa cttcagaata tggaagataa acaatatcag aatgtttctg
     3361 aggttaccaa agctgctggg ttggtttatt aatacaaaac taaattgcgg atgaaatgtc
     3421 ctcagtacgc acataaatga tacgatatat gtgtgtatat ttcttccaga agtaaaagaa
     3481 taatatgcat caataattgt ataatgaaga aaccaaccta acaatgaaaa aagttagcat
     3541 tagatactaa agatataatc tattatcttt tcctttacga ctaagctata gtatatgacc
     3601 aaattatttc actaaactaa cacattggag tgcaaattat aattgcttaa tgatctaaaa
     3661 aaagcacttt ttgaagcagt attagatacg ataaacaaaa actcatcttc agcttcttct
     3721 tctttagcag ttgctttttc cggaggaatt gatagttctt tacttgcaaa agtatgcaaa
     3781 gacattggaa tgaaggttac attactgact atagggtttc aaatctccca agatatagaa
     3841 ttttctaaac agattgctct aaaattagat ttgcctcata agatatcagt aatacagcca
     3901 gaacagttcc agaaagattt actatatatc caacaaaaga tagcgtgtag gaacatttcc
     3961 catattgaaa attgtatagc atatttctat attgcaagaa tggccaatca gaataatctt
     4021 agactaattt taactgcaaa tggttgcgat gaattattct gtggatacaa taaattcaga
     4081 ctaatctatg acgagggtaa aacgaggata atggacttga tgaatgaaag aatcgctaat
     4141 gaacatgtgc tcatagaaga gataaacaag ataacaacag aatttggggt gcttacaaaa
     4201 caaccatttt tctcacaaaa attcattgat tttgctaaag atatacccat tgaacagaag
     4261 atcaccggtt ctaatgattt catacgaaaa catattctga gaaaagtagc actttcaata
     4321 ggtgttccaa gagaatctgc aatgaaacca aaaaaggctc ttcaatatag ctcattgatt
     4381 cacagaaatt tcaaaaggac taataaataa tatcagaata gcaataaaat atatataaaa
     4441 aaagagagca agaatattag caaattatct aaccttaact gcagattaaa taaaacatca
     4501 aatttatcta gcttaattga ttattattat tatgatattt cttatttgtg gcctttacct
     4561 ttctcacaac actctctata atttttgatg atgctgacag atgatttttt gcattaaata
     4621 tgccttttaa ttctatagga gtaagactct ttgatagatt agaatctttt ctcagagcat
     4681 caaaaaaatc ttcctctctc tccagtgctg caaatgccac cctttggata ttacgatatg
     4741 cttcaaatct aggaactcct ttctttatta acgcctcaag aacaaattct gcataaattt
     4801 gaccctttgt aatatcgagg tttgaggtaa ttctctttgt atttacatta agacctatga
     4861 ttatactctt catggaattt aacatttcat ctaagagaat tacagccatt ggaagcgtaa
     4921 atcgttcatt tgctgaattt gacagatctc tttcatgcca taagccaatg ttctccattg
     4981 caacattaac taatgatcgt agaatctttg caagggaaga aactctttca ctcttaattg
     5041 gattacgttt gactggaact gcgctacttc caatctggcc tcttctgaaa ggttctgcaa
     5101 cttcacctat ctctgttcgc tgtaaatttc taatctcaat tgcaatcttg tcaagcgtgc
     5161 aagcaacaag agtaatcaaa aattgcatct ctgcatgtcg ttctcgagga ataacttgtg
     5221 tagcagcttc aacagcataa agtcccaaat ccatagctac tcttctctgt acatctaacg
     5281 ccctattccc cattaaagag cctgttccaa caacgccaag ggttttgcaa agtaggaacc
     5341 gttttttacc ttcttcaatt ctttctatgt gttttgccat ttcagcagcc catactgcaa
     5401 actttagacc aaatgcaatt atacttgcat gctgtccatg tgttctgcca actgcaggaa
     5461 gagtacggaa ttctaatgct ttgtcagtaa gagcagttgc tatgtctagt attttagatt
     5521 caataataga aaatgcgtcc ctcatttgca tagagatggc cgtatctaaa atatcgttac
     5581 ttgttaatcc ataatggatc caaggtcttg atttttctga acattgttca cttaaagcct
     5641 ctactactgc agcggtatcg tgttctgtaa ctgcttctaa ttccttaact ttctcaatag
     5701 taattttgcc agattttgcc ttttttatga tgtcatcaga agcattttct ggaatcattt
     5761 taatatgagc ctgggctgct gatactgcag cttcaaaatc tagttggtat tgtagatgtt
     5821 gttcttcttc aaatattttc ttgatttctt tacttccata acgtcctgaa tcaattggta
     5881 gaatgggcat tgttaattac acaactcatg gactaaaaat taaatcttat tagaaaaaaa
     5941 atttgttgaa tataaaaact gataaattgc aagaaattac acacatgccg gcaaataaat
     6001 tacaacaata gagtcttagg tgtgacaatt acagtgaata tactattgtt tgtatatggg
     6061 tgaatgaaaa taatatctct aaatattgct attattattg attgaattct gctgttatca
     6121 aagtaaataa tattattatg tacatatcat gatatgacaa agtatacaaa ttaatgtaaa
     6181 cggattatgc aagtcacatg gattaattcc aaaattgata tagtaattac attaaacaaa
     6241 aaataataga ataaaagatt ttgtaaaata ctaaaattgt atgagaactt attaatatta
     6301 taaattcaca cagactgtaa tggttgcagc tacattctta gtattttacc gattcaaagc
     6361 aatgagtaaa gatgaggcac agaaagctaa taacgaatgg cgagaactaa aaaatagttt
     6421 accttcaggt attgagcttg taggagaata cgatcatgct tgggggacag aatacaatgg
     6481 attcttgata tttgaagcag atagcagtga ttcatttttg gattggtggt cgagtttcaa
     6541 ggataaggtc agatggtatg tagagcagac ccacacaata gtcgcaagaa gacgataacc
     6601 ttcttttctt ttataatcat agccacccgt acaaatatat ctattttgcc atcttttaaa
     6661 atgctttagt agttctcatc caagtattaa cacaaacaat ctatggtagc gcacttttta
     6721 gatactattg tagtatatct ttgtatagtt atataatttc cactactgta ggtattatct
     6781 caagattact actgtcgatg gcgagactaa gttcagaata ttaacgagtt caacgacgaa
     6841 taatatgtaa tagggtgaaa tgagtatcat ttcaacaagc gtattattac tccatcaggc
     6901 tttctttagg agaagcagaa gacgaggatt tcttaagcct atttaatact gcatctccaa
     6961 ccttcgttaa agtaacttga tcagtagcat ttctggtaag acaaccaagt ctaataactt
     7021 atcgctccag cttatcggca tcgccttcaa gtacctgaag agcaaagtcc ctacctaaaa
     7081 ctatattggt catatcggct ctatcactaa gaaactctag caagtttaga gattgagtat
     7141 catctctgag ctctgcttct gcttctgata tacgcttctg aaatgtttca tctaattctt
     7201 ctgaactgga cattcaaaaa gaggtactgc gccgaggtct ttatagttat atcagaaccc
     7261 cattatggat ttaatgagac gacctattga taaggcatct gaatgttata cgctcaggtt
     7321 aggaccttgg gatataaaac atattgcaga caggttatga agattaggtc tgggactgtg
     7381 tgctgtatga ctacaacaca agcgggtgtg tatgtatgtg tactcgttcc taacatagac
     7441 gttgtatctc tgatgtcatt tcttgtatgt aggcttaggt aaagctgtat ataaccattg
     7501 gaatctgtag gtagtagctg aaatactcgg aatcagcata atacttatta tcttatcaag
     7561 cgtgtaaggt gaaagcatgc attacacatg aaataaaagt aaggtacgtc aaatgagaac
     7621 taatcatcat taagcatgat catatgattt aacaatcgat tgaatggccg ctcgcatgtt
     7681 aacttgtaat tcttcaatgc ttttaccttg actaactgcg ccgggtaatt ctatacactt
     7741 accactatat gctccgtcat cttcttttgc tgtcgtcaca tgatatgttg caggaggaca
     7801 gtcatgacaa ttaggctgtt gtacgtctat actgattatt gttgtcttcc cgttattgtt
     7861 attatccgtc atcgtacatt ctttttaacc atcccatcta tcttctttgc taatgcactc
     7921 atagcatcta ctcccatgtg cgatggataa attatctgtt ctttaggtga tagataggta
     7981 gtaaaatcta tcttattgtc tggcagcttt gaatgctttg taccactaat tccatatgca
     8041 tacatgttcc atatgatttg tgttgtgtat gtccttttag taattacttc aagtgacttg
     8101 gatgcaaaca tataacttgt agaactcaaa tataggtagt acaggccata agaaattatc
     8161 ttggatttgt tctcctccca ctaagataat ttttcactat atccataaaa ttattatgac
     8221 agacagaccg accgacccaa ctttagatta tactataaag cagttaattt aacctagcct
     8281 acggtaatga attttacagc tgaatacttg caagctaaag actttattgt tagtattcat
     8341 cacattcata gtgtttcatt agaaaggaaa gtatcttact aatagagaag tttctttaag
     8401 acatatctca aagacatggg aagtagcaca agatatctcc atatatacat cgatatacat
     8461 tcacgcagag aacacacaac acagcactca catacagatg gtatggtata tgatatccac
     8521 aatgttttaa cgcactgaac ataaagtata atttacgttc attacattga tcttatgaaa
     8581 gataagagat atggagatag atatggagag tgatagccaa ccaaatttac aacccaaata
     8641 gcaaaaaaag atcaaaaata agttaagttt tatattcaag cggtccttag taatgcacat
     8701 aataccatct ttttgaattt acagattttc gtaaactctt cagttaaacc cactcttttt
     8761 taagtgatca gcaatgttaa cttgaaatgc taacaattgt aaacatagac caatgggtat
     8821 atatctatca aatgtgttac caatctatag aaataatcac ttgaataata gctaaattta
     8881 aagctatata tcagcaatgt ataagaatgc ttagaataat aataactgaa tatatttagt
     8941 catggagttg tattcagata cgtttgatta cagaacaact agaacgatga tatgtgtatg
     9001 tatatgtatg ttagatattc cttaaatgaa ttgaatatcc atacccaatt cttattgtat
     9061 ttggaagcat tgtttttcaa taaaattgta tatgtataaa ataaaaaata aaaaataaaa
     9121 acaacgacga cgacaacaac agcagatgat tgtgatcaag gatgagatcc atccacatca
     9181 catgctggtc tattctcagc agcaacttat tcatcgtgtg gtggtcccca gtgaatgttt
     9241 taaagggcga taatacacag tacactacgt ttttaatctc tacttgtatt cttgttttat
     9301 taatgtatat agttgagttc tttgtattaa gtttggaata attttttagt aattaaataa
     9361 attacatttg aaatattgca gctacaactt cttattttga aaaaaactaa agcattcttt
     9421 ttgttttgtc aagtatcaaa tccatttctt ctggattaga aactggcctt ttcttaaaca
     9481 ttgaatgaac cggtcctgct ccatcgccgg tttttctagg aataatatga atatggacat
     9541 gaggcacttc ctgtcctgct tctctaccat tatgaattgc tatagttgaa gcattgactt
     9601 ctgctgcctt ttctactgcg aaagacacat gccaaagcag gtcaaaaact gcagacgagt
     9661 cttctctact catttgctga acttttttgt agtgtatttt tggaataact agagtatgac
     9721 ctatggataa tggcatagca tctagaaatg ctatggcctt attattttga ctaataattc
     9781 tcgccttaat tttgccatca gcaatattgc agaaaataca gtttggatca aacataagag
     9841 taatagaaga caaactcttt aataaaagaa aattgttgta gtttatacca tacagatagt
     9901 tagactatac taaaaaggta tgagcaacag tatatactat tattatcaca taagtgatat
     9961 aagaagcgta tatcatatct atgcaagtct atttcttcgg atactttttc tctagatctt
    10021 cgagtagttt ctttgcatta cttggatcga tcttgctaat tataagatca agcttctcct
    10081 cttgtctatc atttccctct ttagattgtg gtgagccaac ataccataga aaagatagac
    10141 ctgctacctg ccatattaac tgcaaaaact ctgactgcca gttttccatt gtgtctctaa
    10201 gcgtagcatt cagatagtta ccaatatcaa ttgactggtt gtgttctacc tgatcttggt
    10261 agtatgcaaa ccatgcgaat atccaatgcg cagttacggt gattacaaat agagtcaaag
    10321 tgacccatag atacccgcgt ttgctctttg tcattatgct attttttagt ttatttccta
    10381 ttggtatgtt tgtacttgtc accatggcca gattatcagc atcactattt tatagtgaat
    10441 aagatggctt gatgagatac tttgactttt agctaaacat tgattatcta gatataagat
    10501 atcttatttt atacaattat tatactagtt acacaatctc taattgaata ttataataaa
    10561 gcagtggact ggagaagagt aattcattta cccgctatag ttgctataga ttcttctgat
    10621 gatgtatgta gatgacagat taaaggatca tattcaagtg tttgcttcta gtatgtatct
    10681 tccaaaatac tctactactc actactgtta ttagtaagca ttatggtatt gctctaatta
    10741 caggtgaagc tatacataat acagccatga aggaatattg aaagctattg ctggaataat
    10801 atttatatta aataaaacga atcgtcgatg gagataaata ccatagaagt aaaagtagag
    10861 ggaattatca ctactaaaag ttaacacttt agttgctttg caagcaaatt tgtcaaagtt
    10921 ttgcaacctg ataatgcacc tcaggtttgg acacaaacat ctattacttt attcgcccaa
    10981 cgcaatttcc ttcacacact gtgcaacgtc taaatggttc tcctactcca ctgctgcgct
    11041 gatatcaccc attttgttat cgctaagagg aacactataa caagattggt cttcttctcc
    11101 gtacccataa aaagaataat gtaagacgac atttatatct aaagctaata gattaaagaa
    11161 gtcttttt
//
LOCUS       DATAAS010000258         3578 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_271602, whole genome shotgun sequence.
ACCESSION   DATAAS010000258 DATAAS010000000
VERSION     DATAAS010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3578
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271602"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1681
                     /locus_tag="VHF08_04255"
     CDS             <1..1681
                     /locus_tag="VHF08_04255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="beta-CASP ribonuclease aCPSF1"
                     /protein_id="HEX2067892.1"
                     /translation="VNKPEAIDGNMVIEIAQSTGWIAHTRRSPHIPSSSISTIHSILK
                     TSAKERITFLDELGSRIFRSPLIPANGSDNASFNRHSKNQQSVVTETYLKPQPWLINK
                     EEVILCCLGGVKQVGRSCFIVMTRESKIMLDCGINPGEALGLNAYPRLDWFNFDLDEL
                     DAVIISHAHIDHQGFLPTLFKFGYKGPIYCTEPTLPLMNLLQMDSVKISKSNGTYLPY
                     ELRDVNEVIKHCITLPYGKPTDISPDITISLNNAGHIMGSATVHLNISGVHNILYSGD
                     YKYARTQLLDSALSIYPRVETLITESTYGNTTDIMPDQTVVYRNFTDTINKTLIEGGK
                     VLIPVPAVGRAQEIMLVLDKEMREGRLIECPIYIEGMISEASAIHMSYAHYLGYDVRK
                     SVSQGINPFQSEYFTVINGHGKRDEVFSDENAAIIMATSGMLEGGPSVEYFKEIAPSP
                     NNKILFVSYQINGTLGRRVLDGAMNEVSMLEKNGKVKVVPVRCQTQKMDGFSGHSDFN
                     QIMSFVAKIRPKRVLVNHGERSKSDNVASAIYSRLKIRSGVPDNREMLRLR"
     gene            complement(1892..2182)
                     /locus_tag="VHF08_04260"
     CDS             complement(1892..2182)
                     /locus_tag="VHF08_04260"
                     /inference="COORDINATES: protein motif:HMM:NF015632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0147 family protein"
                     /protein_id="HEX2067893.1"
                     /translation="MTSAKKEIKQKENRERLISAISTLESITKNNNVQRNIRNMVREV
                     LVTLKDEKGGSISVRAANAISILDSVTQSPQMQSHIRTMLWQVVSTLESIRE"
     gene            complement(2622..3389)
                     /locus_tag="VHF08_04265"
     CDS             complement(2622..3389)
                     /locus_tag="VHF08_04265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEX2067894.1"
                     /translation="MLDVVIFLIIVGLGAGTLGSIIGIGGGIIITPILALMGFSPTHI
                     ASTSLMAVASSSTSSTIAYSRQARIEYGIGLKMAIFSIPGSIVGVFISNAISLEYFKI
                     SFAILLMLTGIYILFKNCILRKKSNNQLKSAFSLLLCYAGTFIAGIISSLFGVGGGII
                     FVPIMVLIFRMTMTKAAPTSQLILLITSLIGIITHILLAKPDLFNGLSLAAGAFIGGQ
                     IGAALSSHIGEKILQKLLSVFLIAVAIKLIFDSIFNL"
BASE COUNT         1220 a          609 c          631 g         1118 t
ORIGIN      
        1 ggtcaataaa cccgaagcta tagatggcaa tatggtaata gaaatagctc aatcaactgg
       61 ttggatcgca cacacacgtc gttctccaca cataccctct agtagcatca gtacaattca
      121 ttccatattg aaaacatccg ctaaagagag aatcacattt cttgatgaac ttggaagtcg
      181 aatctttcgt tctccgctta taccagcgaa tggctcagat aacgcatctt ttaatagaca
      241 tagcaaaaat caacaaagcg ttgttacaga gacttattta aaaccacaac cttggcttat
      301 aaataaggaa gaagtcattt tatgttgtct tggcggcgtt aaacaggtcg gaagatcttg
      361 tttcatcgtc atgacgcgtg aaagtaagat aatgttggac tgtggaatca atcctgggga
      421 ggcgttaggg ttaaatgcgt atcctaggct agattggttt aattttgatt tagatgagct
      481 tgatgctgtc attattagcc atgcacatat tgaccatcag ggtttcttgc ctacattatt
      541 taaatttgga tataagggac ctatttattg taccgaacca actttgcctt tgatgaattt
      601 gcttcaaatg gattctgtaa agatatctaa gagcaatgga acatacctac cttacgaatt
      661 aagagatgta aacgaagtta tcaagcattg tattacattg ccatatggta aacctactga
      721 catttctcca gatatcacaa tatcgttaaa caatgcaggc catattatgg gaagtgcaac
      781 cgttcatctt aacatatctg gtgtccacaa tattctgtac tctggtgatt ataaatatgc
      841 gagaacgcag cttctcgaca gtgcattatc gatatatccg cgagtcgaga cactcatcac
      901 cgagagtacg tatggtaata ctactgacat aatgccagat caaacagttg tttacagaaa
      961 ttttactgat actattaata aaacacttat agaaggagga aaagtattga ttcctgttcc
     1021 cgcagtcggc agagcacagg aaattatgct cgtcttagac aaagaaatgc gtgaaggacg
     1081 tcttatagaa tgcccaatat atattgaggg tatgatctcc gaagcaagcg ctatacatat
     1141 gtcttatgct cattatcttg gctatgatgt tcgtaaatca gtctctcagg gaatcaatcc
     1201 attccaatca gaatacttta ctgtcataaa tggtcatggt aagcgagatg aggtatttag
     1261 cgatgaaaac gcagcaataa taatggcaac atctggtatg ttagagggcg gtccttctgt
     1321 tgaatacttt aaggagattg cgccttctcc aaacaacaag atcctattcg tatcttatca
     1381 aattaatggt acgcttggcc gtcgagtact tgatggagcc atgaatgaag ttagtatgtt
     1441 ggagaaaaat gggaaagtaa aagttgtacc tgtccgatgt caaactcaaa aaatggatgg
     1501 ttttagcgga catagcgatt tcaatcagat aatgagcttt gttgctaaga taagaccaaa
     1561 acgagttctt gtaaatcatg gtgaaaggtc aaaatcagat aatgttgcaa gcgcaatcta
     1621 ttctagattg aaaataaggt caggagtccc agataatcga gaaatgctca gattacggta
     1681 atctttaaca attgtttcca tagacttttt agccatgtat aaacatatga ttagggacga
     1741 agaatttggc aataagatat agatgtatta attgcaatat agtactaagt ggagaaggcg
     1801 cgtcgagaca ttatctagct aatcctaatc ataaacttga aaaacttccg cctcccttaa
     1861 agccattgaa aaatacggat ataaggtaaa cttattctct tatactttca agagttgaga
     1921 ctacttgcca taacatagta cgtatatgcg attgcatttg aggactctga gttacgctgt
     1981 ctaaaatgct tatagcattt gcggcacgta ctgatatgct tccgcctttt tcatctttta
     2041 atgttactaa cacttctctc accatatttc taatgtttct ttgaacatta ttattcttag
     2101 taattgattc aagagttgat atcgcactaa taaggcgctc ccggttttcc ttttgcttta
     2161 tttccttctt tgctgaagtc ataactaaca cctatttaat taatgaatga gttagattaa
     2221 taaccagtga cttttgaatg tttttatctt aaagcttgta aatatattat agattaaaag
     2281 ttaaattact atcactctat atcacagctc tgattgcgtt ctgtctacta agcatccatt
     2341 cacatcttta aatgatctaa tgttatcata tcagtatttt cgattagcaa taagtaaata
     2401 gcaattctct attacttatt gaaaaattga gtcaaaaata ggtttacagt ttatttgttg
     2461 atgcacacaa aaaaatggat aggcattata tagatttcca tcaattagaa atatagtccg
     2521 actatacaga atttaagaga taggcccttt agaaaaacaa gatcaactgg agctaaatca
     2581 ttggactaga taaaatcaat tagagcattt aaatatgttt cttataaatt aaatattgag
     2641 tcaaatatca gtttaatggc cacagctatt aaaaatactg acagtaattt ctgcagtatt
     2701 ttttctccta tatggcttga aagagcagca ccgatctgac ctccaataaa tgcgcctgcg
     2761 gcaagagaaa gtccattgaa taaatcaggt tttgctaaaa gtatatgtgt aataatacct
     2821 ataagcgagg taataagcag gattaactga gaagtgggcg ctgcctttgt cattgtcatt
     2881 cgaaatatta agaccatgat aggaacaaaa attataccac ctccaactcc aaataagctg
     2941 gaaataatac cagcgataaa agttcctgca tagcacagca aaagcgaaaa ggcagatttt
     3001 aattgattat tagatttttt ccttaagata caatttttga ataagatata gattcctgta
     3061 agcatcaaaa gaatagcaaa ggatatttta aaatattcta aagatatagc attggaaatg
     3121 aatactccaa caatggagcc tggaatagaa aatattgcca tctttaatcc tatgccgtat
     3181 tcgattcttg cttgtctaga atatgcaata gtagatgatg tactgcttga cgctactgcc
     3241 attagacttg tactagcaat atgagttggt gaaaatccca ttaaagcaag aataggcgta
     3301 attattatac caccgccaat gccaataata gaaccgagtg tgcctgctcc tagtcctact
     3361 ataattaaga aaataacaac atcaagcaat tagcagccac gtatatacat taaagaacag
     3421 tttataaatt aataaataat ttgttgtcat acatatttct aaagattttt aaagagttat
     3481 tatacgtaat tctctgaatt ataacaattt tttattatat caatcttact agaaaagcat
     3541 taaattgttt ttaaattaga ataatgtgaa attacaac
//
LOCUS       DATAAS010000259         3416 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4051921, whole genome shotgun sequence.
ACCESSION   DATAAS010000259 DATAAS010000000
VERSION     DATAAS010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3416)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3416)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3416
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4051921"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1686
                     /locus_tag="VHF08_04270"
     CDS             <1..1686
                     /locus_tag="VHF08_04270"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEX2067895.1"
                     /translation="DIFSNANHRIDVCGNSNFPLKISSFESVRKVVIAAKNRGISLRF
                     IIEITKENLQYCKDLMRITDELRHMDEIEANFGLSETEYLGSITLQKEALQATYSNVK
                     EVVEQQQFIFDTLWRKATPAEQKIREIEEGIEPEVIETIRNPFEIQKIAFELVKSARD
                     EILLVFSTANAFHRQERTGMIKLLKEAAAERRVQIRILTPTDDLIKGTVQKLIREQQQ
                     QNQPRIDIRFIGRFSQTKIRILVVDKASSLVVELKDDTKESSYEAMGLATYSNSKSTV
                     LSYVSIFETLWMQTELYEQLVESNNGLAKAYEQLEAANEQLKVHEKMQKEFINVASHE
                     LRTPIQPILGLSEVLHAKIKDTEQRQLLDTITRNAKRLQRLTDDILDVTKIESQSLKL
                     NKERFNLNDVITNVIDEIITSREFKNEKNDDDDDNIKLEYSPKDIFVEADRVRVAQVI
                     SNLLNNAIKFTKEGKITIAIEKKDDEEIIVISIKDTGIGIDSEMFPKLFSKFASKSYQ
                     GTGLGLFICKSIVEAHGGKIWAENNTQEKKGATFYFTLPTINRRQQHVKVVDQ"
     gene            1704..2063
                     /locus_tag="VHF08_04275"
     CDS             1704..2063
                     /locus_tag="VHF08_04275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2067896.1"
                     /translation="MIVDDESDVNLLFKMVLEENGFKVDSFTDPLLALQNFKEQNGMY
                     DMIILDIKMPEMNGFELYRQIKKIDDKAKVCFLTAGEMYYGVYTDIFNSLDAKYFIRK
                     PIDNEELVEKVNNMISS"
BASE COUNT         1273 a          470 c          575 g         1098 t
ORIGIN      
        1 gatattttct ctaatgcaaa ccacagaata gacgtttgtg gtaattctaa ttttccgtta
       61 aaaatctcat cctttgaatc agtaagaaag gtggtaattg ctgccaaaaa tagaggtata
      121 agtctaagat tcattattga aattacaaag gaaaatctcc aatactgcaa agatctaatg
      181 agaataacag atgagcttcg tcacatggat gaaattgaag ctaactttgg actgagtgag
      241 acagaatatt taggttctat aactttgcaa aaagaagcat tacaagctac ttatagtaat
      301 gtgaaggaag ttgtagaaca gcaacagttt atctttgata ctctatggcg caaggcaaca
      361 ccggctgagc agaaaataag agagatcgaa gaaggcatag aaccagaggt tatagagact
      421 atccgaaatc cttttgaaat acaaaaaatt gcttttgaac ttgtaaaatc agctagagat
      481 gaaatactgc tcgtattctc tacggccaat gcatttcatc gccaagagcg tacaggtatg
      541 ataaaattgt taaaagaagc cgcagcagaa cgtcgtgttc aaattagaat cttgacacct
      601 acagatgatc taataaaagg aacagtacaa aagttgataa gagaacaaca acaacaaaat
      661 caaccacgaa ttgatattcg gttcattgga agattttcac aaactaaaat cagaatttta
      721 gtagtagata aagcatcctc cctagtagta gaattgaaag atgatacaaa agaaagctct
      781 tatgaagcaa tgggattggc aacttactct aatagcaaat caacagtatt atcttatgtg
      841 tcgatatttg aaactctttg gatgcaaact gaattatatg aacaattagt agaatctaac
      901 aatggacttg caaaagccta tgaacagctt gaagcagcta acgaacaatt aaaagtccat
      961 gagaagatgc aaaaggaatt tattaatgtt gcaagccatg agttacgaac tcctattcaa
     1021 ccaatacttg gtttgtctga agttcttcat gctaaaataa aagataccga acagcgtcaa
     1081 ttattagata ctatcacaag aaatgcaaaa agattacaac gacttacaga cgacatacta
     1141 gatgttacga aaatagaaag ccagtcctta aaactaaaca aagaaagatt caatctaaat
     1201 gacgtaataa caaacgttat agacgaaata ataacgagta gagaatttaa gaatgaaaag
     1261 aatgatgatg atgacgataa tataaaatta gagtatagtc ccaaagatat ttttgtagaa
     1321 gcagacagag tgagggtggc acaagttatt tccaatctac taaacaacgc tataaaattt
     1381 acaaaagaag gtaaaatcac cattgcaata gaaaagaagg atgatgaaga aattattgtt
     1441 attagtatta aggatactgg tattggtata gattctgaaa tgtttccaaa actattctca
     1501 aagtttgctt caaagtctta tcaaggcact ggattaggat tgtttatttg taaaagtatt
     1561 gtagaagctc atggaggtaa gatatgggct gagaataata ctcaggaaaa aaagggagct
     1621 actttttact ttactctgcc aaccatcaat agacgacaac aacatgtaaa ggtggtcgat
     1681 caataataat aaacaagaga atattgattg tagacgatga gtctgatgtg aatttactgt
     1741 tcaagatggt tttagaagaa aatggattca aagtcgattc attcactgat cctttattgg
     1801 cattgcagaa tttcaaagaa caaaatggca tgtatgacat gataattctt gatattaaaa
     1861 tgccagaaat gaatggcttt gagttatata gacaaataaa aaagatagat gataaagcca
     1921 aggtttgttt tctgacagca ggcgaaatgt attatggagt atatacagat atatttaact
     1981 cattagatgc aaaatacttt attcgaaagc caattgacaa tgaagaattg gtagaaaaag
     2041 taaacaatat gataagttcg taaataagaa aatagaataa aggagaggat gtatagttag
     2101 tttctgattg catgtgttat atacaataaa aagcagaatt atcattagtt gacgaaatac
     2161 tactaactat cacaggttta ttacttaaag gttcctcgtt gcacttttca aatacaatat
     2221 tatattcaaa ctttataatt caaatacatt ctctagattt gtatatttct gatgagttct
     2281 ttatactatc actatcagga aaggctattt attttactta gcaatagtgt tgctgaaact
     2341 ccaacatcgc gcgatattat tgtcatttct taatcttgtt gatagatttt gtaattcgta
     2401 gtttatttct ttgcgcaaca agcctttttt atttaggact ttattcgata tatcaggtat
     2461 ttctttcata ttcattcatt ctacaatcaa ttttgttttt ttacaataag gagtagaatt
     2521 aagtatcatg aaagcggttg tacatcacta caacagaata agatcattag cgttactgtg
     2581 aggtggacat tgcaaaagga ttcaagggat aaactgtata agaatgtaaa ctcgagagta
     2641 aaattccctg ccgttttatt atccataaaa atacacgcat taaagaagtt aaattataat
     2701 cttatattaa cgaaatatct aaattctatt ataataatat tgatgttatt aaaagaataa
     2761 aataatatta atatatattc tattaaagcg catccaataa atgactatta cagccaattg
     2821 taagttaata gtcttctatt attccgattt aaattaccta ctctcctaga tgtattagca
     2881 aagcctcctt tatgacttaa aattatagaa atgctataat aattacttat ggtctttagt
     2941 tgtcctgaat gtggtaatag gatggttaag aaaatagtag acacaacatt gggttataga
     3001 gaggcgtggt actgtaattt atgtgatgga ttctatagcg aaaagaggtt aaaagaaata
     3061 atttctaatg tttaacatga atatttagat gttcataaca atatggaaat cagaatttgc
     3121 cttcgatata tctgttgttt tttacattcc tctttatctt tatttatttt tcatatctct
     3181 taggtctgct gtttcttctc cattaggtgt gaaagaaatt gtatgtcaat aaattctgat
     3241 cttatgaaat atcaattttt acctttattg tagattacat catcttttag taatatgcat
     3301 aaatatttgg taaacgcata tttcctttac taatgtttta acaagtgtta aattctcttg
     3361 ctagaatatt ttttagtcac tttctgatat tttttattat ttcgtttgtc tttagt
//
LOCUS       DATAAS010000260         1617 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4053505, whole genome shotgun sequence.
ACCESSION   DATAAS010000260 DATAAS010000000
VERSION     DATAAS010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4053505"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            427..753
                     /locus_tag="VHF08_04280"
     CDS             427..753
                     /locus_tag="VHF08_04280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067897.1"
                     /translation="MSIKKKIMPSNDWLQNLHGSWRDVECPCGSNFHFDGKIDDLFSW
                     ERVHLRHMISDSENHDMLSFYPKDMVIFYHSKSGYVVERRKHRAEEISDLRHACIYGQ
                     TKLAGV"
BASE COUNT          542 a          236 c          253 g          586 t
ORIGIN      
        1 ttcaaatatt gaataagcca gtgtatagaa agcagtaggt agatttttgc caatcaacca
       61 taatgttcta tttattataa atatgtataa taactaaaag ctgttattaa ctacatctat
      121 ggtaatatga cccaagatca gaatcaagat attgaagaac aagcaacgtt tttctacatg
      181 catttgtaaa gtcagaacta cttgtcatgt tataagatag agtgactgta tggacataca
      241 ttcggttata gccttttggt gttattatag ttgctaagga ttctttattt ttagttaatg
      301 ttcatgctgt tgcaatcttg tgctactttt tacaatctac gatttatagc tttatatcat
      361 taagatgcac tagtcaataa aaaaacaata ataatatata aagaattgaa tcattgttgg
      421 taatttatgt ctataaaaaa gaaaataatg ccttctaatg attggctgca gaatttacat
      481 ggcagttgga gagatgttga atgtccttgt ggaagcaatt ttcattttga tggaaaaatt
      541 gatgatctct tttcatggga aagagttcac ctaagacaca tgatttcaga ttctgaaaat
      601 cacgatatgc tttcctttta tcccaaagat atggtaattt tttatcactc taaaagcgga
      661 tatgtagttg aaagaagaaa acatagagca gaggagatta gtgacttacg acatgcttgt
      721 atatatggtc aaacaaagtt agctggcgta tagtttaatt agaattgcga tttcttagag
      781 ttctactaca gacttcaatt attatttact tcagatatga cagtaactcg tgagtaatac
      841 tgtctttgtg atctaccaac ccagctagtg cgaatttcta tgttttatag atctgtatac
      901 atcttactat ctaagtgata tgcaaaataa tgaatactca accaatatgt tatatacact
      961 tttgagtttc catgacaata gtcagtgtta taagacacaa aatcatctcg aacttggctt
     1021 aaaatagcca tttagaatat actatgtatt gattaaatca ttacatcgtt aactcattgt
     1081 gcgctctctg tctgtctatg aaatattgtt tcttctgact agtatttgtt taaaaaattt
     1141 atcgactagt ttttgataat atccaatcta tttttgcttc tcttttatca acctcatgta
     1201 ttgaatattt cttgtcagat tttataaatt ctttatctct gatatattga acactcattt
     1261 atcattttgt aatcttcagt ttaagacaat atattaaatt aagatcaaat gtaataagct
     1321 cagaaacaca ttaacctcga aaaatacata ttagattctt ttaatcgatt gtttgggact
     1381 tttctgtcac ctgtaagtag gatatacaat aaaaatcctt cttgtcaaga tatttggatg
     1441 cttttgtatt gtcaacagtg gtaagcagaa ttcggccaaa gattatcaat aggattactg
     1501 aacttactgc ataacagtga tatcattatt ttatagcttc actgtgacat ctactgcaat
     1561 tcacagagga tgaacctaaa aacactagag tttggaagca tcgatttagc gtaggta
//
LOCUS       DATAAS010000261         3419 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5133874, whole genome shotgun sequence.
ACCESSION   DATAAS010000261 DATAAS010000000
VERSION     DATAAS010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3419)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3419)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3419
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5133874"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            464..721
                     /locus_tag="VHF08_04285"
     CDS             464..721
                     /locus_tag="VHF08_04285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067898.1"
                     /translation="MPIEYKGKVYLAPNTSDEEIVNKAKKKLVENGIKEEHIQINYNI
                     QDLEIGDIYVSYEPPDLVVRNVYDKKASGITKMKSSGMIQI"
     gene            complement(718..1998)
                     /gene="hisS"
                     /locus_tag="VHF08_04290"
     CDS             complement(718..1998)
                     /gene="hisS"
                     /locus_tag="VHF08_04290"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: protein motif:HMM:TIGR00442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEX2067899.1"
                     /translation="MKLEIPRGMRDIEPEELHNINYIKEKFMETTCLFNFKVMEPSPL
                     EMLTTLEAKAGESISNEIYSFTDKGHRNIALRFDLTIGLTRFVATRRDLKMPVKLASF
                     SDVWRYDEPQAGRYRYFHQWDIEIYGPFSKESDAEVIEFVSVFLKNIGLNVMVEVNDR
                     QLIEEYIKQKLGVAEEQIIPDILRAVDKVTKKSPSELYEEYKDKINFSTLQHLVDLSS
                     IKGSVDEVYSKADLKGLESWSNVVALMDSLKSRRVDNVRVNLGIVRGLDYYSGVVFEA
                     FDPFIELGALVGGGRYDRLTHAFGREDIGAIGAAGGVERIMMALKKNGILKYVPKQMV
                     YVAYTSSNIKTSALGIVSMLRSSGISTDYNLNNGRSLRKQLDDAASKGAVLTVIVGPE
                     EIQKGEVTVRSMDDGTESKQKVKELAKILDRMFH"
     gene            2080..2502
                     /locus_tag="VHF08_04295"
     CDS             2080..2502
                     /locus_tag="VHF08_04295"
                     /inference="COORDINATES: protein motif:HMM:NF001617.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="archease"
                     /protein_id="HEX2067900.1"
                     /translation="MEFRYLDHMTDVIIEAYGSSLEEAFENSAKGLVNTMFHIKEINP
                     DKEYEIIAKGYDIESLLYDWLEKVMLRILIDNIVLSDFKVKITESNGNYFLKGIGKGE
                     ALDLQKHHYKVEIKAVTYHEMEIKQKENIITTRFLLDL"
     gene            2682..3044
                     /gene="trxA"
                     /locus_tag="VHF08_04300"
     CDS             2682..3044
                     /gene="trxA"
                     /locus_tag="VHF08_04300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEX2067901.1"
                     /translation="MSVEKKASSAHASGNQALMELSEANFDEIVSGSKPVLVDFWATW
                     CGPCQFMLPIFDKLAKKYGDKVSFGRLNVDDNQGLAMRFDVYAIPTFIIFMNGKAIDR
                     AVGAVGEKGLEGLLQKYQ"
     gene            complement(3123..>3419)
                     /locus_tag="VHF08_04305"
     CDS             complement(3123..>3419)
                     /locus_tag="VHF08_04305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEX2067902.1"
                     /translation="KVLVINENGKKIGTIHQVQESGKAIEEATKGMQVAVSIKGPVIG
                     RQINEEDIFYTDLNSRQAKLLIERFNHRLNEEEKEVFETILKLKRKTDPAYGYI"
BASE COUNT         1093 a          618 c          548 g         1160 t
ORIGIN      
        1 aaatagtatc tgtcaattac caatatcggc ctcgggcata tcaattgtgt taatcgattc
       61 tcacgtatat cttttagcat atttaccatg actatagtaa taactaattg ttactctttt
      121 tatttattac gaactaggaa atgctgcgtc taatcaccaa gtaaatccag aaaacctaat
      181 attgtagagt tttgttatga gttgaaagtt tactacatct aattgacaaa atattattat
      241 tagaaatttt ttgaaattat ccgaaattat agtcatcgat ctgactctgc catttattct
      301 gcaatagcaa taatgagcca ttattgttta tcctgtctct actttttatg aaatacaatt
      361 atcataatga tctttgatag cggattgagg atctaaagat aattttctca actatataca
      421 aagttcttta acctatttta gtaatcaaca tcacataaga catatgccca tagaatacaa
      481 aggtaaggta tatctggctc ccaatacttc tgatgaagaa atagttaata aggctaagaa
      541 aaaattagta gaaaatggaa tcaaggagga acatattcaa atcaactaca atatacaaga
      601 tctagaaatt ggggatatat acgttagcta tgaaccgccg gatctagtag tcagaaatgt
      661 ttatgataaa aaggcatcgg gaattacaaa aatgaagagc agtggaatga tacaaatcta
      721 gtgaaacatt ctatccaaga tttttgccaa ttcctttact ttttgtttac tctcagtgcc
      781 atcatccatt gacctcactg ttacctctcc tttctgaatt tcttcaggtc ccactatcac
      841 agttagaacc gcaccttttg acgctgcatc atcaagttgc ttcctaagtg atcttccatt
      901 attaaggtta tagtcagtgc taattccgct gcttcgcaac attgaaacta tacctaacgc
      961 cgatgttttt atattactcg aagtatatgc aacataaacc atttgtttag gcacgtattt
     1021 tagaattcca ttttttttaa gagccatcat tatcctttct acccctcctg ctgcgccaat
     1081 tgcaccaata tcctctctgc cgaaagcatg agttaatcta tcatacctgc ctccgccaac
     1141 aagcgcaccc aattcaataa atggatcaaa tgcttcaaag actactcctg aataataatc
     1201 tagtcctctt acaattccta gattaaccct gacattatcg actcttctgg attttaatga
     1261 gtccatcagt gctacgacat tactccaact ttctaatcct tttagatctg cttttgaata
     1321 aacttcgtct acacttcctt ttatgcttga tagatcaact agatgctgaa gtgttgagaa
     1381 attaatttta tctttatatt cctcatatag ctcggagggg ctcttctttg taaccttgtc
     1441 aactgccctc aaaatatcag ggattatttg ttcttctgca acaccaagtt tctgtttaat
     1501 gtattcctca attaactgtc tatcattcac ttctaccata acatttagtc caatattttt
     1561 caaaaatact gaaacaaatt cgattacctc tgcatcagat tctttgctga atgggccgta
     1621 gatctctatg tcccattgat ggaaataccg atagcgtccc gcttgtggtt cgtcatatct
     1681 ccatacgtca gaaaaagatg ccagtttgac aggcatcttt aaatctctcc ttgttgctac
     1741 gaatctggta agaccgattg tgagatcaaa tcttaatgca atatttcgat gtcccttgtc
     1801 agtaaaacta tagatttcat ttgatatgga ttctccagcc tttgcttcaa gcgtggtaag
     1861 catctccaaa ggcgatggct ccataacctt gaagttaaag agacacgtgg tttccatgaa
     1921 tttctcttta atataattaa tattatgtag ttcctctggt tctatgtctc tcattccacg
     1981 gggaatttct aacttcataa tgaacgcagt aatttgttga catttagatt ttacgatcaa
     2041 ttataataac ataagttttg taccattaaa gtgacaacaa tggaatttcg atatcttgat
     2101 catatgacag atgttatcat tgaggcttac ggcagctcgt tagaagaggc atttgaaaat
     2161 tctgccaaag gacttgttaa tacaatgttt catatcaaag agatcaatcc tgacaaagaa
     2221 tatgaaatca ttgccaaagg atatgatatc gaaagtttac tctatgattg gttagagaaa
     2281 gttatgctaa gaatattaat tgataatatt gtattatcag atttcaaggt taaaatcact
     2341 gaaagtaatg gcaattattt tcttaaaggt attgggaagg gagaagcatt agacctacaa
     2401 aagcatcatt ataaggttga aatcaaggca gtaacctatc atgaaatgga aattaaacaa
     2461 aaagaaaaca taattacgac tagattcttg ttagatctat aatctatgtc tttattgtaa
     2521 tttttgacca tgcgttgtat cccaaaataa tattgaaatt ataaaaattg ttagtatgaa
     2581 aatatctaat aatataggaa agcagcattt tcagacaatg aaagttgctt aaagattaaa
     2641 aaatcttaaa tatcaaatac atcatctaat tcatagaaaa catgagtgtt gaaaaaaaag
     2701 cttctagtgc gcatgcaagt ggtaaccagg ctttgatgga gctttctgaa gcgaactttg
     2761 atgaaatagt aagtggaagc aagccagttt tagtagactt ttgggcgact tggtgtggac
     2821 catgccaatt tatgcttccc atatttgaca agttagcaaa aaaatatggc gataaggtat
     2881 catttggtag gttgaatgtt gacgataacc aaggattagc aatgagattt gatgtgtatg
     2941 ctattccgac atttataatc ttcatgaatg gcaaggccat tgacagagct gtaggagcag
     3001 tgggagaaaa gggtctcgaa ggattacttc aaaaatacca atagcatagc caattacatg
     3061 ttacttgatt ctatttctct gccatctgat gattattata tagcaaacta ctactgctat
     3121 tgctaaatat atccatatgc ggggtctgtt tttcttttga gtttcaaaat cgtctcgaaa
     3181 acttcttttt cctcttcgtt taagcggtgg ttaaatctct cgatcaatag ttttgcctgt
     3241 ctactattca gatctgtata gaaaatatct tcttcgttga tttgtcttcc aataacggga
     3301 ccttttatag aaacagcaac ttgcattccc ttagtagctt cttcaatcgc ttttccgctt
     3361 tcttgtactt gatgaatagt accaattttt tttccatttt catttataac aagaacttt
//
LOCUS       DATAAS010000262         2100 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5133925, whole genome shotgun sequence.
ACCESSION   DATAAS010000262 DATAAS010000000
VERSION     DATAAS010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2100)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2100)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2100
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5133925"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..133
                     /locus_tag="VHF08_04310"
     rRNA            <1..133
                     /locus_tag="VHF08_04310"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF02540"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02540"
     gene            complement(436..948)
                     /locus_tag="VHF08_04315"
     CDS             complement(436..948)
                     /locus_tag="VHF08_04315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067903.1"
                     /translation="MFLSRRRIILVGAIAAIAIAIILLPAILATVSAPDINSITIELS
                     KVEVGDIANDNTIPLNVFFNIHNPTDKAMTTSKIDYNLIADGESLGQGVLSYEDIPLN
                     GRPQLSPGLTTTLRSTFELSQSNVNSDIFRIINNAQATEQIKWKVEGVAQIESAFSFS
                     PKQFSDELNE"
     gene            1044..1550
                     /locus_tag="VHF08_04320"
     CDS             1044..1550
                     /locus_tag="VHF08_04320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HEX2067904.1"
                     /translation="MALTDSLLIWVHLVTASIWVGGSIFLGIVLAPMLKTITGSLGDR
                     IALMIKIGRRFNKIAMPSFIILIITGIYNSRAFLEEPHLLFETNYGIILVFKIILVIA
                     TLVTYIIHIRILNVETEKTLSAGNAESVYVQSIRSKIIHLGRITVILSVTILLLAALL
                     DGGGILVN"
BASE COUNT          668 a          339 c          359 g          734 t
ORIGIN      
        1 tcccgagaaa agacagcctt ccgtaaggag gagggcggct atagaagatg gcgttgatgg
       61 gatggaggtg taagcatcaa gctatggcga gatgttcagc ctgccatttc caatagccca
      121 aggcacctga cagttgtgga attgtggaat aatgataata tagtataggc tctaacatac
      181 gtaaagaaca agtaaagaaa aaaagttgta ttgttttgtt gatctacaca tgacgactga
      241 actttatttt tatttttatg tttatcttaa tcttatcttt gaaaatacta ccattgtaat
      301 taatgattaa aatatagaac aaaagattat caataattga ttctatcgta tctctatagt
      361 gggagagaat tgactttact ttaagtgcct aatgacaact gatctttagg gactatttat
      421 atattggaag ttaacctact cgtttaattc atcactaaat tgttttggag aaaagctaaa
      481 tgcggattcg atctgagcta ctccttcaac cttccatttt atctgttcag ttgcctgtgc
      541 attattaatt attctgaaaa tatcagaatt cacgttagat tgactcaatt caaatgttga
      601 ccttaatgtt gttgtaaggc caggtgagag ttgaggtctt ccattaagag gaatgtcttc
      661 ataggacaaa actccctgac ctagagactc accatccgca ataaggttat agtcaatttt
      721 tgacgttgtc attgccttat cggttggatt atgtatatta aaaaatacat ttagtgggat
      781 agtattatca tttgcaatat cccccacctc tacctttgaa agttctatgg tgatgctatt
      841 tatatcagga gcacttacgg tagcaagaat tgctggaagt aatattatgg caattgcaat
      901 tgctgcaatt gctccgacaa gaataattct acgtctactt agaaacatag tatttgttca
      961 atattagctg aatataaaat tgaattaaaa cctttcttat atcagcatga ataatatgtc
     1021 ctcgtagaag ctattattgc aagatggctc ttactgatag cttacttatc tgggtgcatt
     1081 tagttactgc ttcaatatgg gtaggtggct caattttcct tggcatagtt cttgcaccca
     1141 tgctcaaaac tattacagga tcattgggag atcgtattgc acttatgatc aaaattggaa
     1201 gacgattcaa caagattgca atgccatctt ttataatttt aataataaca ggcatttaca
     1261 attcacgtgc attcttagag gagccacatt tgttattcga aacaaattac ggcataattc
     1321 tcgtgttcaa aataatatta gtaattgcaa ctcttgtaac ttatataatt catatcagaa
     1381 ttcttaatgt agagacagaa aaaactcttt cggctggaaa tgctgaaagc gtttatgttc
     1441 aatctattcg gtcaaaaata attcatttag gaaggataac tgttattttg tcagtgacaa
     1501 tattgttgtt ggcagccctt cttgatggcg gaggaatatt ggttaactag aagaactttg
     1561 aatttgatat aaatatatac attgtaaaat ttttgcaatg attttccaat agcctattca
     1621 atacagacta ttcaataaaa tacatgatat tgattctatt tattggtaat gtaacatata
     1681 accttggttg taagtcttgt aatacgaact ctgtcgaatt ctataacttg ttactatcta
     1741 cttataattt taaagctgga tgcttttcta aatcacagac atagaaatgt ggaaatttca
     1801 tatattgctc ataaatagct ctacgacgac gacttgtgct tttctgttcg aaaatatcaa
     1861 taacatgtat tttaatatct atgcaactac aaccatctat tttagataca actaatgctc
     1921 cttactgctt cattaaagat actatggcac tagctatact ggaattacca aataatgttt
     1981 ctaccttgcc cttttttttg gatggatata gccttaatat attcatctga ccgtcaacta
     2041 aaaactctaa atgtgttgat tgtcttgtga tatggatgtt tttgataccg aatctctttc
//
LOCUS       DATAAS010000263         3197 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1900116, whole genome shotgun sequence.
ACCESSION   DATAAS010000263 DATAAS010000000
VERSION     DATAAS010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3197)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3197)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3197
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1900116"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..640
                     /locus_tag="VHF08_04325"
     CDS             <1..640
                     /locus_tag="VHF08_04325"
                     /inference="COORDINATES: protein motif:HMM:NF014670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HEX2067905.1"
                     /translation="PVGSLEQHGEHLPVSTDSLIAENISKLVAEQIPSFVLPPILFGV
                     SYEHRPMFNISVHNSTLSRIIADICCSLVENGMKNIVLINGHHGNSGALQYIAQNLYG
                     KIPNDIRIHSINYWQLMQSEFDHAGDVETSLVLAIAPELVRMDKANANYNKLSKSKVA
                     YSSMTNTPGSFPKITGNGVWGDPRGATADKGHKLLDEIVKNLVQTIHELETN"
     gene            1116..1346
                     /locus_tag="VHF08_04330"
     CDS             1116..1346
                     /locus_tag="VHF08_04330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LSm family protein"
                     /protein_id="HEX2067906.1"
                     /translation="MSVDMAVKVLDESLGKVVLIKLKGGKVIRGNLHGFDQHMNLLLD
                     DSVEFLDSGNSNDLGTIVVRGDNVVIISPPPM"
     gene            1376..1546
                     /locus_tag="VHF08_04335"
     CDS             1376..1546
                     /locus_tag="VHF08_04335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L37e"
                     /protein_id="HEX2067907.1"
                     /translation="MTKGTTSMGKFTRKKTHIRCRRCGHNAFHKRGRECAKCGFPDSR
                     MRKYNWIKRQVI"
     gene            1698..2507
                     /locus_tag="VHF08_04340"
     CDS             1698..2507
                     /locus_tag="VHF08_04340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067908.1"
                     /translation="MLEASFLIAASTLAGVISAAVILTRISRSKTSSSLNKKRDLLIK
                     PFSTTKAELQSLLFEKSLLSQSITRVYEASYEGKIDSVERDRLLLKYKQQLDSYDKKI
                     ADLQSVVDITELADMRNGLVSLLEERITAIDRRLAEISKKYGISTSDIIDSLPKSDRQ
                     AIVSKHREEENKESGRKNLKENEEDRYQSYVSNDELMTAAVREEDQKEQKKKHNDKEK
                     VKTEEKTIDELQKEIMHALSRLEQVDPDPDNRYEKNYEPVVDRKRDALSSF"
     gene            2665..>3197
                     /gene="rpiA"
                     /locus_tag="VHF08_04345"
     CDS             2665..>3197
                     /gene="rpiA"
                     /locus_tag="VHF08_04345"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004751 - ribose-5-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006098 - pentose-phosphate shunt [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase A"
                     /protein_id="HEX2067909.1"
                     /translation="MSQSSSSSSSYTAAPSPSHSHSSSSHYPSNSKSPLVTSQSIELL
                     AKDAVKRYVKDNQVIGLGSGSTIAFLVKEMARLENKNTLKFIVTSLQIKTEAENSGLE
                     IVDENQIPEIDIVFDGADQIDSQYNMIKGGGGALLKEKILISAARKVIIIADSTKFVE
                     TFDRPVPIEVHPFARSAV"
BASE COUNT         1119 a          511 c          616 g          951 t
ORIGIN      
        1 tcccgtagga tcactagaac aacatggaga gcatctacct gtttctacag attctttaat
       61 tgcagaaaat atctcaaaat tagttgcaga acagattcca tcttttgtcc taccgccaat
      121 tttatttgga gtatcttatg agcacagacc tatgtttaac atttcagtgc acaactccac
      181 tttatcgaga attatagctg atatttgttg ttcacttgtc gaaaatggta tgaaaaatat
      241 cgtgctaata aatggccacc acggaaattc aggagcgcta cagtatatcg ctcagaattt
      301 gtatggaaaa atacctaatg acattaggat acattcgatc aattattggc agttgatgca
      361 aagcgaattt gatcatgcag gcgatgttga aacatcactt gtacttgcca ttgctcccga
      421 attagtcaga atggacaagg caaacgctaa ttacaacaaa ctttcaaaat caaaagtagc
      481 atattcaagt atgacaaata ctccgggttc ttttccaaag ataactggaa atggagtttg
      541 gggagatcca agaggtgcca ctgcagataa aggacataaa ttgcttgatg aaatagttaa
      601 aaatcttgtt cagactatac atgaactaga aactaactaa gaactatata cgtgaccaat
      661 tattgctact taacagcagt ggtacaccag aatgttatgc aggcaacaaa attgatgtaa
      721 tatacatata tctatatata tagatagata gataaaaata atatatgatt ttgtagatgg
      781 ctaatgctca agcatatata tcatagatga tactgaatta aagaatatga tacaaaattc
      841 atatccaata aataaaagat aggacatagt atgttttgat gatgatgacg actactacta
      901 tttcccatca cattcagaaa aaaggaatgg agattaaaac aacacatcat caataactgg
      961 ttaaaattat ttgtactctt cttgcacatg tgagtgaaaa ggaatagttt catgattttt
     1021 ctgatatttt gatgagtgta agttaacaga gccattgcaa atagtgaaat tttaatatat
     1081 acctatatta tgccttacat gtaggtagat tagcgttgtc agtagacatg gcagtaaagg
     1141 ttcttgacga gagcctcggt aaggttgttc ttataaaatt gaagggagga aaggttatca
     1201 ggggtaatct tcatggtttt gatcagcaca tgaatttgtt attagatgat tctgtagaat
     1261 ttttagacag tggtaactcg aatgatctag gcacaattgt agtacgcggt gacaatgttg
     1321 ttattatatc tccaccacct atgtaaaaga gagtgaaaga gagggaggaa ttagcatgac
     1381 caaaggcact acttcaatgg gtaagttcac cagaaagaag acacatatta gatgtagaag
     1441 gtgcggccat aatgcatttc ataaacgggg gagagaatgt gctaaatgtg gctttccaga
     1501 ttctcgaatg aggaagtata actggatcaa acggcaagta atctaacttt ataagccagc
     1561 aaattcttaa tgttatatct tcttcttatt gcgtggcttg attttatatg tgtaacactt
     1621 ttcactatat cgtaaaaaga acactaaacg gaaaagctta actgtgtctg gcattaatat
     1681 aaaaaagaga tccgcctttg cttgaagcgt cgtttttaat tgcggcttct acattagcag
     1741 gagtaatatc agcagctgta atccttacta gaatctcaag aagcaagact tcttcttcat
     1801 taaacaaaaa acgtgatctt ctcataaagc cctttagtac tactaaagca gaacttcaat
     1861 ctttactatt tgaaaaaagc ttgttatcac agtccattac tagagtttac gaagcttcgt
     1921 atgaaggcaa aattgactct gtagaacgtg acagactttt actaaaatat aaacaacaac
     1981 ttgactcata cgacaaaaaa atcgcagatt tgcaatccgt agtagatatt acagaacttg
     2041 ctgacatgcg taatggactg gtttctctgc tggaagagag aataacagca atcgaccgca
     2101 ggttggcgga gatttctaaa aagtatggaa tatctacatc agatatcatc gattcattac
     2161 caaaaagtga tcgacaagca attgtcagca agcatcgtga agaagagaat aaagagtctg
     2221 gtaggaagaa tctaaaagaa aatgaggagg atcgatacca gtcgtatgta tcaaatgatg
     2281 aattgatgac agcagcggtt agagaagaag atcaaaaaga gcagaaaaag aagcataatg
     2341 ataaagaaaa ggtaaaaaca gaagaaaaga ctattgacga gcttcaaaaa gaaattatgc
     2401 atgcacttag tcggttggag caagtggatc cagatcctga taatagatat gagaagaatt
     2461 atgagccagt agttgacaga aaacgtgatg cactcagtag tttttaatgt tatgtgtggt
     2521 atgtgtgtgt ttttcttgat tttatgattt tatatattta acatatgtac tatgctaatt
     2581 tttaattggt tgttttccat aaatagataa taataataat cctccagata aagattaaag
     2641 tcccattgtt ttcttagtta ttagatgtca caatcgtcat cgtcatcatc ttcttatact
     2701 gctgcgcctt ctccttctca ttctcattct tcctcttctc attatccttc taattcgaaa
     2761 tccccattag tgacaagtca atctattgaa cttctcgcaa aggatgcagt aaaacgatat
     2821 gtaaaagata atcaggttat cggtttaggc agcggaagta ctatagcatt ccttgttaag
     2881 gaaatggcaa gactagagaa taagaataca ttaaagttta ttgttacatc tctccagata
     2941 aaaacagagg ccgaaaatag cggactggaa atagttgatg aaaatcaaat tccagaaatt
     3001 gatattgttt ttgatggtgc cgaccagatt gattcgcaat ataatatgat aaagggaggc
     3061 ggtggggcct tacttaaaga aaagattctg atctcggcag caaggaaagt aattattata
     3121 gctgattcaa ccaagtttgt agagacgttt gatcgacctg ttcctattga agtccatcct
     3181 ttcgctcgct cagcagt
//
LOCUS       DATAAS010000264         2824 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_280073, whole genome shotgun sequence.
ACCESSION   DATAAS010000264 DATAAS010000000
VERSION     DATAAS010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2824)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2824)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2824
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_280073"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            646..1308
                     /locus_tag="VHF08_04350"
     CDS             646..1308
                     /locus_tag="VHF08_04350"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2067910.1"
                     /translation="MADSLQPNHVGLIVRNTHPHDIEKIVDLQKESFPYLARYGNIWH
                     PEELESHLRIFPEGQFVAVEPDGTVVGSASTLIVSLNAEYTEHTWKEITANGMFTNHN
                     PHGDSLYGADISTHPKYRHEGIGSMLYDIRKELVIRLNLRRIIGGGRLFNYCEYADKM
                     SASEYAQKVIRGEFRDPVLSFELDNGFKFIKILPNYFDDVRSLNYASFIEWLNPEYNR
                     SQ"
     gene            complement(1390..1941)
                     /locus_tag="VHF08_04355"
     CDS             complement(1390..1941)
                     /locus_tag="VHF08_04355"
                     /inference="COORDINATES: protein motif:HMM:NF014564.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0008410 - CoA-transferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA transferase"
                     /protein_id="HEX2067911.1"
                     /translation="MCQVYPYDCQDLHDHLFIENYHRSGLSKHGLSSLELAKLRPGII
                     YVSESAYGEVGPWQYRRGAEQLAETVTGIAAELGAIDSPKLFPGYLNDYLTGYLAAFG
                     ACAALIRRAIEGGSYWVRVSLCRTAMWVQGLGRVTDVLLSNGMEKINPITSEERESFM
                     MESNSSFGIVKHVASVAKYSETS"
     gene            2050..>2824
                     /locus_tag="VHF08_04360"
     CDS             2050..>2824
                     /locus_tag="VHF08_04360"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2067912.1"
                     /translation="MASSSSSSPANHKVAVVTGSSTGIGYETSLILARNGFLTYATMR
                     NLNKSENIKLVATKENLPIQIKQLDVTDDVSVTNAIQAISSEAGRIDVLVNNAGYGLN
                     GAFEDLAMDEIKAQYETNVFGLIRTTQAVLPIMRRQKSGTIVNISSGAGRFGFPGGSA
                     YVSTKFAVEGLSESMSYELEPFGIKVVIVEPGVIRTNFFDGLVVAKKSQDPNSPYSQI
                     MQKTATGFEEMMKNASSPDLVAKVVVNAIRDEKPSLRYLA"
BASE COUNT          943 a          493 c          514 g          874 t
ORIGIN      
        1 aggacaaatc actcctgaag gtagagttgt attccacgga tcgatgtttt ttaagacatt
       61 gtctccaaca ggacaatttc catcacccct agcttttctt gacaatcgga tgggcatcta
      121 caattacgaa tcagatattg ctggaaatgc tataaaacaa gtatgggagt ggcaatagag
      181 aacaagtcat ctttgcattt actccttatt ttttagatca taatattgag tgttaaagtg
      241 attatttatt attatgatag gatttggaat tcttgttgat tttgtttttt ctactttgac
      301 tatatgaaat aagtaaaaaa ttgcgtctaa atggaggata aaaccagcaa atataagtca
      361 aaatatacta tagttacaag gtactgacac tagtaaaatg aattagctaa tagattaaat
      421 tatacattga ttctttgagt ataattatgc tacttctata ggcaaccctt tttattgtta
      481 tatgaatgtg acaatattat ttctcttgat acttctaaag ttgaattgta tatacaaccg
      541 ttgttgcatt agtgataaat tgctctgtta aataataata ttatttagat aataacaata
      601 caacctttta tttgagcatt ctttaaaaca tatcgcgtat acaatatggc agactcatta
      661 cagccaaatc atgttggatt gatagttaga aatactcatc cacatgacat tgaaaaaata
      721 gttgatttac aaaaagaatc atttccatat cttgcacgct atggaaatat atggcatcca
      781 gaagagctag aaagtcatct ccgtattttt ccagaaggac aattcgttgc tgtcgaacca
      841 gatggcacag ttgttggttc tgcaagcact cttatagttt cacttaatgc tgaatatact
      901 gaacatacat ggaaggagat tactgctaat ggtatgttta caaatcataa tcctcatggc
      961 gatagtcttt atggtgcaga tatctctaca cacccaaaat atagacatga gggcatagga
     1021 agtatgcttt atgatatacg caaggaatta gtcattagat tgaatttaag aaggataata
     1081 gggggaggaa ggttgttcaa ttattgtgaa tatgcagaca agatgtctgc atcagaatat
     1141 gctcagaaag tgattagagg agaattcaga gatcccgttc tctcttttga gttagataat
     1201 ggatttaaat ttataaagat acttcctaac tattttgatg atgtccgttc tctaaactat
     1261 gcgagtttta tagaatggtt aaatccagaa tataaccgaa gccaataatt agattataaa
     1321 atatcatttc ataatatttt accagactgg catctgtgcg ccaaggggaa ctactggaag
     1381 ctcataatat tatgaggtct cagaatactt tgctactgat gctacatgct ttacaattcc
     1441 aaatgaagaa tttgattcca tcataaatga ttctctctcc tctgaagtaa ttggatttat
     1501 tttttccatt ccattagata ataatacatc tgttactctt cctagacctt gtacccacat
     1561 agcagttctg caaagggata cacgtaccca ataactgcca ccctctatag ctctgcgaat
     1621 aagcgctgcg caagcaccaa atgcagccag atatccagtc agataatcgt tcaaatagcc
     1681 agggaatagt tttggagaat caatcgcccc aagttctgct gcaatacctg taactgtttc
     1741 agctaattgc tccgcgcctc ttctatactg ccacggccca acttctccat aagcactttc
     1801 tgaaacataa attataccag gtcgaagctt agccagctct aatgatgata atccatgctt
     1861 tgatagaccg cttctgtgat aattttcaat gaaaagatga tcatgaagat cctgacaatc
     1921 atagggataa acttgacaga tagtagatcg ctgtcataaa ctaaagtaag ttggatctca
     1981 catactaagt agccagagaa tcacttactg acttaagtag tatggtatat ctatatggat
     2041 agaatataga tggcttcttc ttcctcctcc tccccagcca accacaaggt tgccgttgtt
     2101 acaggtagct caactggaat aggatatgaa acttctctaa tcttggcaag gaatggtttt
     2161 cttacatatg ccacaatgag gaaccttaac aaaagtgaaa atataaaatt ggtcgcaact
     2221 aaagaaaact tgccaatcca aattaagcaa ctagatgtta ccgatgatgt atcagtcacg
     2281 aatgcgatac aagcaatatc atctgaagca gggcgaatag atgtccttgt aaataatgca
     2341 ggttatggac taaacggagc ctttgaggat cttgcaatgg acgaaataaa agcacaatat
     2401 gaaaccaatg tgtttggatt gataagaaca actcaagcag ttcttccgat tatgagaaga
     2461 caaaaatctg gaactatcgt aaatattagc tctggcgctg gaagatttgg ttttcctggc
     2521 ggatctgcct acgttagtac aaaatttgca gttgaaggac taagtgaatc aatgtcatat
     2581 gaattagagc catttggtat caaagtggtt atagtagaac caggagttat tagaacaaac
     2641 tttttcgatg gtttggttgt tgcgaaaaaa tctcaagatc caaattctcc atattcgcaa
     2701 ataatgcaaa aaacagctac tggctttgaa gaaatgatga aaaatgcttc ttctcctgac
     2761 cttgtagcaa aggtagttgt taacgccatc agagatgaaa agcctagtct taggtattta
     2821 gccg
//
LOCUS       DATAAS010000265         1749 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5141766, whole genome shotgun sequence.
ACCESSION   DATAAS010000265 DATAAS010000000
VERSION     DATAAS010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1749)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1749)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1749
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5141766"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..351
                     /locus_tag="VHF08_04365"
     CDS             <1..351
                     /locus_tag="VHF08_04365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067913.1"
                     /translation="EVLGIHLSLERNMIVAEQFLKHLVIKYGKHKVSSDGGTWYPQAC
                     KFLKLKHHIHSSFEKSVIERTVQYFKDRTESFDDYFPCTKKKRCKLYHVVNWLTMFAD
                     IHNKLIQNEMTFLS"
     gene            complement(1027..1530)
                     /locus_tag="VHF08_04370"
     CDS             complement(1027..1530)
                     /locus_tag="VHF08_04370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067914.1"
                     /translation="MFLHIFAIECEELRYNYDALIIAKLHRQYISYITRWSTCFIVAN
                     HFRVSINIIGNMSKTLLYNGKSEVEEEEQKSQVKIPNVFHEQHHQQEEEDKEFIILKI
                     YKSEIDKAIEDLKEHKKINQYYEPDYKLIVERYTDKILDVYGWYESLKQTIRTTDRTS
                     MLERDEL"
BASE COUNT          575 a          262 c          273 g          639 t
ORIGIN      
        1 gaagttttag gaattcacct ttcattggaa agaaatatga ttgtagccga acagtttctg
       61 aagcatttag taataaaata tggaaaacat aaagtgtcat cagatggcgg tacatggtat
      121 ccacaagcct gtaaatttct gaaactaaaa catcatatac attcttcatt tgaaaaaagt
      181 gtcatagaaa gaacggtaca atattttaag gataggactg aaagttttga tgattacttt
      241 ccttgtacta agaagaaaag gtgcaaatta tatcatgttg taaattggtt gaccatgttt
      301 gcggatattc ataataaact tattcaaaat gagatgacgt tcttaagtta acagagccaa
      361 ctattgatat tatatagtat atatacgcag aatttttata actgaacttc tttaatatat
      421 ttatgtagta tggctcatac tgctagagat tattacataa tctcgctttc cataggtagc
      481 gaaaatctct aggtttctag agtagcctat gcaaactatg gactgatgat cgataataag
      541 ttatatttta gccatgggct ctcttgttca tgaatctgtt taattcgact gaatgtgcaa
      601 tttatacata aataattttg tttagcaatg caatgggtat tttcgaaaga gcttggaaga
      661 aatattactg gttatcaact ccaacatgct ataatcaaaa aaagtgaagc cacttcatat
      721 actgaaatgt tcttgatggt ggtaaatttg taccagagtg ctctcataga ctaaccatat
      781 taaacataat ttagaatatg gatataagct gatagatatg atgtaactta acctgtagaa
      841 ggctgagaag gaagtaaata ataacttatg gcatcatcaa aaatgtcctg tggtcaagtt
      901 ctgctgccaa tatttcgcaa tcggtatttt ataatatata atattagttt gagcatctat
      961 taataaactc ccccttttta tattttgaaa cacttcatat tcttcttgct gctatataga
     1021 tagtctttat aactcatctc tttctaacat agaagttctg tcggtagttc ttattgtctg
     1081 cttaagactt tcataccatc cataaacatc caatatttta tctgtatagc gttctactat
     1141 taacttgtag tcaggttcgt aatattggtt tattttctta tgttctttta aatcctcaat
     1201 tgctttatct atctcagatt tatagatttt taatataatg aattccttgt cttcttcttc
     1261 ttgttgatga tgttgttcat gaaagacgtt aggaattttg acttgacttt tttgttcttc
     1321 ttcttctact tcacttttac cattatacaa caatgttttt gacatattac cgatgatatt
     1381 gattgatacc ctaaaatgat ttgccacaat aaaacatgta gaccatctag taatatacga
     1441 aatatattgt ctatgtagtt tagctattat aagcgcatca taattgtaac gtaactcttc
     1501 gcattcaata gcaaatatat gtaagaacaa gaagaggtgc tctgctacaa cacataatta
     1561 gatttattaa ctctaatgta ggcagacacg caataatgct ggagttttaa gttttgtctt
     1621 gataagatta tattgattca taaacagctt aaacgctgaa aaaagaaaaa aaggaaagat
     1681 tatctatttg ttaatctttt ttcttgcatt ttagcttcag gtattcatag tcgtcatcat
     1741 gctcgtcgt
//
LOCUS       DATAAS010000266         1680 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_286293, whole genome shotgun sequence.
ACCESSION   DATAAS010000266 DATAAS010000000
VERSION     DATAAS010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1680)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1680)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1680
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_286293"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(562..1257)
                     /locus_tag="VHF08_04375"
     CDS             complement(562..1257)
                     /locus_tag="VHF08_04375"
                     /inference="COORDINATES: protein motif:HMM:NF012630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M57 family metalloprotease"
                     /protein_id="HEX2067915.1"
                     /translation="MPDTNLLLYKKLLFALLVTLFLLIALESSRAFQIASAGDDKENE
                     EDVSGDDDFEEENSIQICCAWGEKLEDGSLTYKISGSDSDIQQAVRTAIEDWDYNIIG
                     LELEEINKKKKEADIEVTFEDDGEEIAGQTINNFNGFGFIDHVEMTISENAFGTDFDT
                     KTIEQIAKHEMGHALGLGHANFEGNLMTELVNDGTGTIDDCEIKSVNEANQWKLIDGS
                     DSAYAPSKYDVEC"
BASE COUNT          548 a          304 c          239 g          589 t
ORIGIN      
        1 ttttcgccat ttttttatat gattttagac accgaataaa tattataaag catatgagca
       61 gggcagagag acatagctaa ttttagaagc tgcaaacggt tgagcagtaa tattctcttc
      121 gatacgtgtg ggaatacgta cattggtggt ccctaatttt tgttcgtaag ataatagatt
      181 ctgctttaaa agttaaaata atgtgtctga aattgctaat aagtcatatg atttttattc
      241 tataacagtt ctctttgccg acagtagcta aatcatatat agttgttttc aaatccaata
      301 taggagagag attaatctcc cttctatttt atagagaata caacccataa aaatatggat
      361 tcgcaaaatt atttaattga acatactctg gcttctttaa attgttaagg ttcataatcc
      421 gtagattcaa taatactact ctagtggaga aataacataa ttggttatcg ttttatatat
      481 attatatgta tactgataaa tttttgtcta ttaggtctag tacagaaaga acatcatagt
      541 attgaagaaa ataatttaag ctcagcattc tacgtcatat ttactaggag catatgcgga
      601 atccgagcca tctataagct tccattggtt agcctcattg acagatttaa tctcacagtc
      661 atcaattgtt cctgtaccat cattaacgag ctctgtcata aggttaccct cgaagtttgc
      721 atgaccaaga cccaatgcat gccccatttc atgctttgct atttgttcaa ttgtttttgt
      781 atcaaaatct gttccaaagg cattctctga tatagtcatt tccacgtgat caataaaacc
      841 aaatccatta aaattattta ttgtctgccc agctatttcc tccccatcat cctcaaaagt
      901 cacttctata tcagcctcct tttttttctt atttatttct tcaagttcaa ggccaattat
      961 gttgtaatcc cagtcttcta tggcagtacg aactgcctgc tgtatatctg aatcacttcc
     1021 acttatcttg tatgttagcg aaccgtcttc aagtttttca ccccaagcac aacatatctg
     1081 tatcgagttc tcttcttcaa aatcatcgtc gccggataca tcctcctcat tctccttgtc
     1141 atcacctgca gatgctatct gaaatgctct tgatgattcc aaagcaataa gaagaaataa
     1201 cgtgaccaat aatgcaaata ataatttttt atacaatagc aaattagtgt ctggcaatag
     1261 ttaatacata ttctttatat aaacgtcatt tcttttttac tgaacaattc tgggaaattc
     1321 caataggcat atttatttga ggtaagattt gtcgaaatgt aattatgttc tagtattttg
     1381 aataagtgtt tgtattcttg ttatcaacct gacatactat tatattttca tatgatgaaa
     1441 aacaaaagaa aagagcaaaa cattgttaga gtacaagcat agatttaaag caacttttcc
     1501 tcagtatgag cctgaactgt tataatggtt atatcaagca ttaaatatag ttcctctgat
     1561 caaatccaat agctttttta tctgaatttt actcattata atgagtttac tatgtatacc
     1621 aacgaaccag ataaagatac taacaaaaca gcaatcaata gcaaaaacag aactatcaca
//
LOCUS       DATAAS010000267         1970 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4066170, whole genome shotgun sequence.
ACCESSION   DATAAS010000267 DATAAS010000000
VERSION     DATAAS010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1970)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1970)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1970
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4066170"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..138)
                     /locus_tag="VHF08_04380"
     CDS             complement(<1..138)
                     /locus_tag="VHF08_04380"
                     /inference="COORDINATES: protein motif:HMM:NF014880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle receptor subunit
                     alpha"
                     /protein_id="HEX2067916.1"
                     /translation="MLDNLRTGLRTALKKIVGASDVNEELIESLCKDVQRALLQSDVN
                     VR"
     gene            complement(145..831)
                     /locus_tag="VHF08_04385"
     CDS             complement(145..831)
                     /locus_tag="VHF08_04385"
                     /EC_number="6.3.1.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR00290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017178 - diphthine-ammonia ligase
                     activity [Evidence IEA];
                     GO_process: GO:0018193 - peptidyl-amino acid modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diphthine--ammonia ligase"
                     /protein_id="HEX2067917.1"
                     /translation="MRLVSLFSGGKDSTFSIFKMKEIGHEVVCLITMQPQTDDSLLFH
                     YPNSALTKQLGEAMGIPSFRFELNKSTKEEEVNSLEYAIKKIKSIHNIQGLVHGGISS
                     IFQKNNFQIACSKQGLEIFTPLWGVEPFRYMHDLIDQKFCIKIVGVSTMGLDESWLGM
                     TLDNDSLYRLKHLSKKYGFNITFEGGEAETLTLDCPLFKKRLKIKDARTHWDGQRGIF
                     EILEVALISK"
     gene            1192..1788
                     /locus_tag="VHF08_04390"
     CDS             1192..1788
                     /locus_tag="VHF08_04390"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX2067918.1"
                     /translation="MISTGDNNAKSFLSMPVSSILQRNVAILDRSQTAADAITAMRDL
                     SVRSVLVADTKKEIIGLVSKTDILYRLLSLHRLPARTRLEEIMSSPIISVPPEVTILD
                     ALAAMEKHNIRQLVVSSDSKVYGTISREDIIIKTEKAVVQTVNSFKLDSAVCIMSPFA
                     STSLMNKRDELTCPHCSNQYNNKELLSKHVKVIHSDNK"
BASE COUNT          641 a          357 c          305 g          667 t
ORIGIN      
        1 tctaacattg acgtcagatt gaagcaatgc cctttgtaca tctttacaca aagattcaat
       61 gagctcttca ttaacatcag atgctcctac tattttttta agagctgttc taagacctgt
      121 tcttaaattg tctaacacga cagattactt ggatattaat gcaacttcca atatttcaaa
      181 tattcccctt tgtccatccc aatgagttct ggcatccttt atctttaatc ttttcttaaa
      241 cagaggacag tctagagtta aagtctcggc ttccccaccc tcaaaagtta tgttaaatcc
      301 atattttttg cttaaatgtt ttaacctata taaagaatcg ttatccaatg tcattccaag
      361 ccaactctca tctaatccca tagtagaaac accaacgatt ttaatacaga atttctgatc
      421 aataagatca tgcatgtatc gaaaaggttc tactccccat agtggagtaa atatttcaag
      481 gccttgtttt gaacacgcta tctgaaaatt gtttttttga aagatactag atattccccc
      541 atgaactaat ccttgaatat tatggataga ttttatcttt ttaattgcat attcaagtga
      601 attgacttcc tcttcttttg ttgatttatt aagttcaaat ctaaaggatg ggatacccat
      661 ggcttctcca agttgcttag tcagcgcgct gtttgggtag tgaaataata ggctatcatc
      721 tgtctgaggt tgcatagtaa tcaaacatac tacttcatgt cctatctcct tcatcttaaa
      781 tattgaaaaa gtactgtcct ttcccccaga gaagagtgaa acaagcctca tgttaataat
      841 gaaaagatcg cctttattaa ctgcatgatg acataatgac gattctatct aaaataaata
      901 agctacatta tgataaatct acagcacatt tataccacta ctgagcagtt gatgagctat
      961 aaatatctga tgatttataa tgaaacattt gctcaaaaac tacctgttta agaaaatttc
     1021 tcaaccttat ctgataggcg ttgtcattta aatcgctcct atactacttt ctttcaaccg
     1081 cttttctggt taaatggaat atgtttaaga tattaccacg aagtttgtgt atgatgtcag
     1141 ctgcaattat tagaatacaa ctttaaataa tcctgagacc attgaatact attgatttct
     1201 acaggagata ataatgctaa atcattttta tctatgcctg tttcatcaat attgcagcga
     1261 aatgtggcaa ttttagatcg atctcagaca gcggcagatg ctataactgc tatgcgagat
     1321 ctctccgtcc gctctgtttt agtagcagat acaaagaagg aaataatagg cctagtatct
     1381 aaaactgata ttttatatcg attattatca ttgcatagat taccagcgcg tacacggctt
     1441 gaggaaataa tgtcatcacc aataatatca gtaccacctg aagtgaccat tttagatgca
     1501 ctcgctgcaa tggaaaaaca taatataaga caattagtgg taagttcaga ttctaaagtc
     1561 tatggtacta taagtagaga agatattatt ataaaaacag agaaagcggt ggtgcagacc
     1621 gtgaattcat tcaaattaga ttcggccgtc tgtataatga gtccatttgc ttccacatct
     1681 cttatgaata aaagagatga attgacttgc cctcattgca gtaatcaata taacaacaaa
     1741 gaattgttgt caaaacacgt aaaggtaatt cattctgaca ataagtagaa tttaatgatc
     1801 ttttctttca ttctctagta gttttactca ctattgaatt ctcttcagag tgatgaagaa
     1861 tcaaatcagg taaatctgta attgaaggta aaagacgtag aatctcttca tgtttgtcta
     1921 agaatattaa tcctgcttct gtagttttat agagacctgt tatttttgaa
//
LOCUS       DATAAS010000268         1626 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4066185, whole genome shotgun sequence.
ACCESSION   DATAAS010000268 DATAAS010000000
VERSION     DATAAS010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1626
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4066185"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(598..942)
                     /locus_tag="VHF08_04395"
     CDS             complement(598..942)
                     /locus_tag="VHF08_04395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030234 - enzyme regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEX2067919.1"
                     /translation="MKRLDIIIPHERLSEVNNILHKHKVGGITFYDIKGRGRAKQEPV
                     AVGRGVMRYVPEFGSRTKIEVLVTDSLSNQIIDDLLKEISTGSSSDGKIFVYDVAEAY
                     DIGSKESSDIAL"
BASE COUNT          535 a          262 c          251 g          578 t
ORIGIN      
        1 ggacttgagg tatcgtgata tattaagtga ttataagcaa taatgaaaga atttttcaat
       61 ttgttattct gagagttaaa atcctataaa tataaaaaaa gacaaatctg agaacaaata
      121 ttattaggat ttcggtcttt ggttaaggct taaaactgat aaatccaacc gatactaact
      181 atataatatc tcaacagcca cgcagattta tctcgggtta atcattagaa ttttttatat
      241 gttaactaaa ttttttaatc aataggtgtg tagttatccg tctcttggtg gtgaaaatta
      301 ttgtttgggt atatatatga gccgtctcta ttcacctact cttcatcgaa atcatcggat
      361 atatcttcgt ccaaatcttc ttcaaagtca tcttcaacta tttcatctat gtcactttct
      421 tcagacatat aaaaatattg gagtatttat ccgtaataaa cacttttgcc gagtacttcg
      481 aaccattttc aatcatgaca taatatcctt ttgaattttt gctgtgacaa tcgaatgagt
      541 gagaattgaa aaaacaacga tataagaaat gataagaact atatcttttc taataattta
      601 taaagcaata tcgctacttt ctttgcttcc aatatcataa gcttcagcaa catcatagac
      661 aaatattttg ccgtctgaag atgatcccgt gcttatctct ttgagaagat cgtcgataat
      721 ttgattagat aaagaatctg tcactaaaac ctctatcttt gtgcgagatc cgaattctgg
      781 cacatacctc attacacctc tacctactgc aactggctcc tgctttgctc tacctctacc
      841 cttgatatca taaaacgtga tgccacctac cttatgctta tggagaatat tatttacttc
      901 tgaaagtcgt tcgtggggaa taataatgtc taatcttttc attacaggac ttttccttaa
      961 agagaaagta ataagcttta ttattttagg atatcttaaa attaatgtat atacttagat
     1021 taagaagcta acaactattt tcaaattact tagcaaggtt gattgttatg cttgtaaatc
     1081 agacattgtc gggatatcag cttattagat agccttgatt tcaaggctca ataatgacac
     1141 taagaatgtt agtagaatag gaatggaata atttgaggat tattgtttgt cgtcaaaatt
     1201 ggaataaacg gcatgcagta gagatatatg cttgctgcta gaggacctag gtttattgct
     1261 tactgtaaat gttatctcca tctaattcca taaatcatct gtagcatgtc atatatctgt
     1321 ctgtttagaa tacctcttat gaataaaaga gatgaattga cttgccctca ttgcagtaat
     1381 caatataaca acaaagaatt gttgtcaaaa cacgtaaagg taattcattc tgacaataag
     1441 tagaattcta atgatctttt ctttcattct ctagtagttt tacttactat tgaattctct
     1501 tcagagtgat gaagaatcaa atcaggtaaa tctgtaattg aaggtaaaag acgtagaatc
     1561 tcttcatgtt tgtctaagaa tattaatcct gcttctgtag ttttatagag acctgttatt
     1621 tttgaa
//
LOCUS       DATAAS010000269         3873 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2981092, whole genome shotgun sequence.
ACCESSION   DATAAS010000269 DATAAS010000000
VERSION     DATAAS010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3873
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2981092"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            228..1202
                     /gene="trxB"
                     /locus_tag="VHF08_04400"
     CDS             228..1202
                     /gene="trxB"
                     /locus_tag="VHF08_04400"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004791 - thioredoxin-disulfide reductase
                     (NADP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEX2067920.1"
                     /translation="MSKIAAKEQDQYIEGNEAFEVIIIGSGPAGYTAGVYTSRAKLRT
                     LIISGTLPGGQLMTTSEVENYPGFPNGIFGPELMMNMREQAERFGTVIVDDEVIRVDF
                     SKRPFIITTHSKTYEAESVLICTGASPRKLGIEGEQQFAGRGVSYCATCDGPFFKGED
                     IVVVGGGDTALEEATFLTKFGKSVKIIHRRESLRGSKILQQKAFENPKIHFLWNSVVA
                     DIKGDKKIGTIVVKDINNGKQQIIQAGGLFVAIGHEPNTAIFKGQLEMDDKGYIILKS
                     QTKTSVEGVFAAGDVHDYRYRQAVTAAGFGCMAALDVEKWLTERRHGN"
     gene            complement(1221..2255)
                     /locus_tag="VHF08_04405"
     CDS             complement(1221..2255)
                     /locus_tag="VHF08_04405"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase family protein"
                     /protein_id="HEX2067921.1"
                     /translation="MNSQLRRQNRMTTVARPDIIDQVGHTPLIELTSFSTKRIKFYAK
                     LEWSNPFGSVKDRAAYWMIKDAEKKGVLKKDKSIIIEPTSGNTGIALTGIASSLGYKV
                     EIVIPEKVSEETKTILRQLGAILHETSDDLCPRVGAGTDQSIALAKAISKPRPDIYYM
                     PNQYENDANYLAHYESTGPEIWEQTNGNITHFFSGCGTGGTITGTATFLKEKNQNIKV
                     VAVQAQRNHLLQGLRNFEESSMPDLFRRREKVVDEWMTATNIDSFNMVKQLLTREGLL
                     VGPSSGSVLSSMLKAAEKLDNGHVVGIFADDGRKFRSLYLKENIFDKDEYDNALLSAK
                     NMSNIAYTHS"
     gene            complement(2227..2475)
                     /locus_tag="VHF08_04410"
     CDS             complement(2227..2475)
                     /locus_tag="VHF08_04410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HEX2067922.1"
                     /translation="MSTKSGESTTKTIDVRGLFCPEPVFRTKIEMEKLAIGDILKIVS
                     DDPESEEDVSRWVKRNGHEILSINKIKKDLEFTIKKAK"
     gene            complement(2908..3672)
                     /gene="cofE"
                     /locus_tag="VHF08_04415"
     CDS             complement(2908..3672)
                     /gene="cofE"
                     /locus_tag="VHF08_04415"
                     /EC_number="6.3.2.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043773 - coenzyme F420-0 gamma-glutamyl
                     ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="coenzyme F420-0:L-glutamate ligase"
                     /protein_id="HEX2067923.1"
                     /translation="MVHAKIEIIPIHIPTAIKPEDKLDLIILESICQAHENLYDRDII
                     VIAQKIISKSEGRIVNLNLINPSDKSIQLARKNCKDARIIEMILRESKEVIREDRGVI
                     IVETRQGFVCANAGIDQSNVEDSVNHVVLLPTDADESARKIRHSIKMQTTKNVAVVIT
                     DTFGRPFREGQTNVAIGIAGIKPIKSYVGTIDMYGKKLKVTEIATADEIASAAELVMG
                     KSDGIPVAIVRGCMYDTEDKPSISNLVRRKEKDLFR"
BASE COUNT         1205 a          703 c          642 g         1323 t
ORIGIN      
        1 ttgaaataat cctttatatt ttaatagcca tatgttagta aatgaagaat acaaaaaatt
       61 tcctaacaat taacttttga caattgtata tctaacagat ggtcttactt gtaatgagaa
      121 tcttattgaa aggtttctat agaaggaaat caatgttcgc catctatatc tgaatatgta
      181 tatcaacaaa ttattaaagg tgctatcctt tttatctctt aatattaatg tctaagattg
      241 ccgcaaaaga acaagatcaa tacatcgagg gaaatgaagc atttgaagta atcatcattg
      301 gttcaggacc tgcaggttat acagctggag tttatacatc acgtgcaaaa cttagaactc
      361 ttataatttc tggtaccctg cctggtggac agttaatgac gacaagtgag gtagaaaact
      421 atcctggttt tcccaatggt atatttggac ctgagctgat gatgaatatg agagaacagg
      481 cagaaagatt tggtacagtt attgtagacg atgaagtcat ccgagttgat tttagtaaac
      541 ggccctttat aataacaacg cactcgaaaa cttatgaagc agaatctgta ttaatttgca
      601 caggtgcctc tcctcgcaaa ttaggaattg aaggtgaaca acaatttgcc ggtcgaggag
      661 tatcatattg tgccacttgt gatggtccat tctttaaagg tgaagatata gtagttgttg
      721 gtggaggaga tactgcattg gaagaagcaa cgttcttgac caagtttggc aaatctgtaa
      781 agataattca taggcgagag tcattacgtg gaagtaagat tcttcaacag aaggcattcg
      841 agaatcccaa gatccatttt ttgtggaata gtgtggtggc tgatattaaa ggtgataaaa
      901 aaatcggaac cattgttgtt aaggatataa acaatgggaa gcaacagata attcaagcag
      961 gaggattatt tgttgcaatc ggtcatgaac ctaacactgc gatatttaaa ggccaactag
     1021 agatggatga taaaggttac attattttaa agagccagac aaagacaagt gtagagggag
     1081 tttttgcagc gggagatgta catgattata gataccgtca ggcagtaact gcagctggat
     1141 ttggatgtat ggctgcatta gatgtagaaa aatggttgac tgaaagaagg catgggaatt
     1201 aaaaattatt gttacaatac ttagctgtgt gtatatgcaa tatttgacat attctttgca
     1261 cttaggaggg cattatcata ttcatcttta tcaaagatat tttctttcaa ataaagactt
     1321 ctaaactttc ttccatcatc tgcaaatatt cctacaacat gaccattgtc tagtttttca
     1381 gcggctttta acatagatga caagacagac cctgaggaag ggcctactag taaaccctct
     1441 cttgttaata actgcttaac catattaaat gaatcaatat tagtggcagt catccattca
     1501 tcaacaactt tttcacgacg tctaaataaa tctggcattg aagactcttc aaaatttctc
     1561 agaccttgta agagatgatt cctctgagct tggactgcga caactttaat gttctgattc
     1621 ttttccttaa gaaaagttgc ggttccagta atagttccac ccgtaccaca gccactaaag
     1681 aaatgagtaa tattaccatt agtttgctcc caaatctcag gaccagtact ttcataatga
     1741 gccaaataat tcgcatcgtt ttcatactgg tttggcatat aatagatatc aggtctaggt
     1801 ttcgatattg ccttcgcaag tgctatactt tgatccgttc cagctcctac tctggggcac
     1861 agatcatcag atgtctcatg aagaattgct cctaattgtc ttaatattgt ttttgtttct
     1921 tcactgactt tctcaggaat aacaatttca accttatatc ctaatgacga cgcaatacca
     1981 gttaaagcaa taccagtatt tcctgaagta ggctctatga taatgctctt atctttcttt
     2041 aatacacctt tcttctctgc gtcctttatc atccaatatg cagctctatc tttcacagag
     2101 ccaaatggat tagaccattc caattttgca taaaatttaa tacgcttagt tgagaacgaa
     2161 gtaagttcta ttaagggagt atggccaact tggtcaatta tatcaggtcg agcgacagtt
     2221 gtcattctat tttgccttct taattgtgaa ttcaagatct tttttaattt tgtttattga
     2281 taaaatttcg tgaccgtttc tttttaccca tcttgagaca tcttcctcag attctggatc
     2341 atcagatact atttttagta tatcacctat tgccagtttt tccatctcta tcttagtacg
     2401 aaatactggt tcaggacaaa aaagccctct gacatcaata gttttagttg tggactcgcc
     2461 acttttagta ctcatactaa taaacacaat agataattgc atcattatat taaatgttta
     2521 tgaagatcat gaagaaaatt atgttataaa gactattact agataatctt aaatacgaat
     2581 tttttatctt tatccagtta tgaattcact aaatctatat cagtgacaaa ttatgacaag
     2641 gaaaatcaca atattttagg gaaaagtcca ccataaatgt attttataaa attatctttc
     2701 taaaaaacca actttagaag tcctatctgc tcgtatctat ttttgtaatg acatttcaac
     2761 atatctgcgt tttaaaccac tataacacta tgagatcgtt tacacttata atatctttga
     2821 aattacaata tggcgtttag agaacattgg cagattggaa agttacagct gccaaatttc
     2881 ttcttataat tgcattcatt catcttatta tcgaaataaa tccttttctt ttctccttac
     2941 caaattggaa atggagggct tgtcttctgt gtcatacata caacccctta ctatggcgac
     3001 tgggatgcca tctgatttac ccattacaag ctcggcagca gatgcgattt catccgctgt
     3061 cgcaatttct gttaccttca atttctttcc atacatatca atcgtgccta catagctctt
     3121 tattggcttt attcctgcta tacctattgc aacattggtt tgtccttctc taaatggcct
     3181 accaaaggta tctgttatta caactgctac gttttttgtt gtttgcattt taatggaatg
     3241 tctaattttc cttgcagatt catcagcatc agtcggtaat aaaaccacat gattgacact
     3301 gtcttcaaca ttgctctgat ctattcctgc atttgcacag acaaaaccct gtcttgtttc
     3361 tactattatt actcctctat cttctcttat tacctctttt gattctctta aaatcatttc
     3421 aataattctt gcatctttgc aattttttct tgctaactgg atagatttat cggagggatt
     3481 gatcaaattg aggttcacta ttcgaccctc agattttgaa ataatttttt gcgcaataac
     3541 tatgatgtct ctatcatata gattttcatg agcttgacat atggattcta aaattatcaa
     3601 atctaattta tcctctggtt ttatcgctgt aggaatatga attggaataa tttctatctt
     3661 agcatgaacc attaatgcaa gataaacgtt gacgatataa aaaactgatt acctattatt
     3721 gcgctgcgca acaactgcgt gtccaaattt cttttctaat aagttaagta ataacattag
     3781 atcacgaatc tctataactg catctgattt ttccttaacc ttatctacag gacagaatcc
     3841 tattgtgaat gccgccagtg aaaacaactt caa
//
LOCUS       DATAAS010000270         2014 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5148546, whole genome shotgun sequence.
ACCESSION   DATAAS010000270 DATAAS010000000
VERSION     DATAAS010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2014)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2014)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2014
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5148546"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(332..1678)
                     /locus_tag="VHF08_04420"
     CDS             complement(332..1678)
                     /locus_tag="VHF08_04420"
                     /inference="COORDINATES: protein motif:HMM:NF024808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEX2067924.1"
                     /translation="MNFDKFFTIRHNNRLPLVFIFVIIILINSILATTNFIIPSFAKK
                     EVTLTAQLVEPRERWDMLISMALQDLRAKHPDLDIQINYTTLEYNDARMYMLNTLANR
                     TSIDLISVDQIWLGEFADKGFITDLTNLTESWGRSYDWYETNWDGGVYNDKIYGIWAW
                     TDVRSIWYWKDLLNNSGVDPNSLKTWDGYIESAIKLNDALKGKGIQAVELVGGPGSPN
                     EWFPFLWMLGGDILEYRQGHPTKDRYWFPTYNSTEGVKALEFFKQLVDVGVKPITIDF
                     EEEFVDRKYAVMLGGSWLPGSFLPLTKTSIEAQVGMIPMLPVPYKNTSTATIMGGWLL
                     SIPNTSENKDLAWELIMIMLKPEILSPMLAKYGYLPTQIPIGQGPYSAELRKSIPYYN
                     ELISMIPFGHERPNIPEYPLIADHIREAIDAVYSGTKEPKQSLDYAAAKSAIALGW"
BASE COUNT          647 a          364 c          310 g          693 t
ORIGIN      
        1 aaaattttta atcattttct attaaatata aaagatgaca aaagaatatt ctactgttcg
       61 atggatattt tatatatgta tatcaattga agacgcatat ttcagttatc aaattgaaac
      121 tttttgattt tgtaaggctc atttatagat ataatggtaa taaatctcat gaccgagtta
      181 gagttattgt gaatatctag atattttaga tatctctgtc tcaagtatca aaattttctg
      241 tcgtatagac tacgctacca aattgttcaa aatagtctaa cttttaagga ttgaagaata
      301 atagcaaaca acctttgtag cgcctattaa tttaccaacc aagagctatt gcagattttg
      361 cagcagcata atctaatgat tgcttaggtt ccttagtacc agagtaaaca gcatcgattg
      421 cttcccttat gtgatcagct atcagcggat attccggtat attcggcctc tcgtgtccaa
      481 atggaatcat agagatcaat tcattataat atggaattga ttttcgcagt tctgctgaat
      541 aaggtccctg tcctataggt atttgtgttg gaaggtatcc atattttgct agcatagggg
      601 aaagtatttc aggttttaac attatcataa ttagttccca tgccaagtcc ttgttttctg
      661 aagtatttgg aatactcagt aaccatcctc ccataatagt tgcagtcgaa gtatttttat
      721 atggtactgg aagcattggt atcataccta cttgtgcttc gatactcgtc tttgtaagag
      781 gtaaaaaact tcctggtaac catgagccac caagcataac ggcatatttt ctatcaacaa
      841 attcttcttc aaaatcaatt gttattggtt taacacctac atcaactagc tgtttgaaaa
      901 attcaagtgc tttaactcct tctgtactat tatatgttgg aaaccaatac ctatcttttg
      961 ttggatggcc ttgcctatat tcaagtatgt ctcctccaag catccataga aatggaaacc
     1021 attcatttgg agaacctgga ccaccaacaa gctcgacggc ttgtattccc ttacctttca
     1081 atgcatcatt aagctttatt gcagattcaa tatatccatc ccaagtcttt aatgagttag
     1141 gatcaacacc tgaattattc aagagatcct tccaatacca tatactcctg acgtctgtcc
     1201 aggcccaaat accatatatc ttatcgttat aaacaccccc atcccaatta gtttcatacc
     1261 aatcataaga tctaccccaa ctttccgtaa gatttgtcag atctgttata aatcccttgt
     1321 cagcaaattc tccgagccag atttgatcta ctgatatcag atcaatggaa gttcggttag
     1381 ccagtgtatt taacatatac atccgagcat cattatattc taaagtggta taatttatct
     1441 gaatatcaag gtcaggatgt tttgctctca aatcctgtaa tgccattgaa ataagcatgt
     1501 cccatctctc tcttggttcg actaactgag ctgttaatgt aacctccttt ttagcaaaag
     1561 agggaataat aaaatttgtc gttgctaata tactatttat taatattatt ataacaaaaa
     1621 taaagacaag agggagtctg ttgttatgtc taatggtgaa gaacttatca aaattcattt
     1681 cataaatact actaatgacg tatattcaga ataacgaata ataaagtttg tattcaactt
     1741 ttgttttata gcaatatcta tattataaga atgtcctaca ttaggctatt ctattaattt
     1801 gattacaaag caataattgt tttcaaattc ccaacgaaac tatagtacac ttttcagaaa
     1861 tatcggatct tgatcttccg tgtatgataa tgagatccag tgtaaaatat gtttacatgt
     1921 tactggaaaa gcagagcccg taaattggat tttgaagtag cgcaatattg gaatctgcaa
     1981 cagtaaatga aaaggaatat tttcccttaa cttt
//
LOCUS       DATAAS010000271         1599 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2454300, whole genome shotgun sequence.
ACCESSION   DATAAS010000271 DATAAS010000000
VERSION     DATAAS010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1599)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1599)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1599
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2454300"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(25..1062)
                     /locus_tag="VHF08_04425"
     CDS             complement(25..1062)
                     /locus_tag="VHF08_04425"
                     /inference="COORDINATES: protein motif:HMM:NF013694.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEX2067925.1"
                     /translation="MQTTIAYNEQEIKEKGSIEDIKQGYSIWVDLVDPTRAEIGRMQE
                     LFSLDAKAVETTLNKSKKPQVRILEDHTYTIILGIKYKDLRTLITDGVYLFLGKGWLI
                     TIHSSDVDLMSNVYRLFEEKNKKVMGAPIDALYYSMISEIVDRYEQLLTAIELTITNF
                     EQRTLYRPTKKMLAYLDTLSRQIIVLRRHFWHIRDILNFLIHMEKEQSKKEVEVKYIE
                     MAYDNITQLIQLVESYRDTINSTRDLYMANISLQMNDTMRILAIFSAIVLPLTFISGV
                     YGMNGLDLNNINSLPLGFLIVVLSMIIVVAVLFIFFKKKQWILVKKDSDNDDELLINK
                     ELSKGKWSSNH"
BASE COUNT          485 a          272 c          253 g          589 t
ORIGIN      
        1 ttgagtttgt gtctattatg ttgtttaatg attagaactc cattttccct tactcaattc
       61 tttattaatt aaaagttcgt cgtcgttgtc actatccttt ttcacgagta tccattgttt
      121 tttcttaaag aaaataaaca gaactgcaac tactataatc atagaaagta cgactattag
      181 aaaacctaac ggcagactat taatattatt tagatctaaa ccattcattc cgtaaacacc
      241 agaaataaat gtcaatggca atactatagc tgagaaaatg gctagaattc tcattgtatc
      301 attcatttgt aatgatatat tggccatata gagatccctt gttgaattta ttgtatctcg
      361 atatgactct acaagttgta ttagttgggt gatgttatca taagccattt caatgtattt
      421 gacttcgact tctttttttg actgctcttt ttccatatgt atcaaaaaat tcaggatgtc
      481 tctaatatgc cagaaatgcc ttcttaaaac tattatttgt ctggatagtg tatcaagata
      541 cgcaagcatt ttttttgttg gcctgtataa agttctttgt tcaaagttag ttatggttaa
      601 ttctattgct gtcagaagct gttcatatct atctacaatc tcagatatca tactataata
      661 taatgcatcg attggagctc ccatgacttt cttatttttc tcttcaaaga gtctatacac
      721 attactcatt agatctacat ctgatgagtg tatggttatg agccagcctt tgccaagaaa
      781 tagataaaca ccgtcagtga taagagtgcg aagatccttg tattttatac cgaggattat
      841 ggtgtaggta tgatcctcta atatgcgaac ctgaggtttc ttggatttat tgagagttgt
      901 ttctactgct tttgcgtcca atgaaaataa ttcctgcatt cttccaattt cagctctggt
      961 aggatcgaca agatcgaccc atatgctata tccttgtttg atatcctcta tggagccctt
     1021 ttcttttatc tcttgttcgt tgtaggcaat agtcgtttgc attttattct tgtatgcaat
     1081 aacaagatac taattactta gaattataaa ggtggattct tttcatacaa ctaatcgtat
     1141 tcgctattta agaataagtt tcttctattc gtatgacact catcttggtt agttatacgt
     1201 tggttcatat cctaacaatt tccattgata ttattaatca ggacattgtg tggaatactt
     1261 ttttcactac tgatttacat tttcattcta attgaaatga actaactgaa acatgttgaa
     1321 aattcaatga atcgactaca gctgtaaaga gagccgcacg aagatcttag attaaaccct
     1381 ctttaatgtt tgtgtctaaa ctgcttgaga agttgactac ttgaaattcg gaaaggaatc
     1441 actaactgag tcctaacaat ctagccagac atttcttaca tattaacgag caataattta
     1501 ttaatatggc tattgtattg ccatagttta cttgcaacca tggccctatc gataaaatga
     1561 aaagggtaaa aagtaggaaa aattatcatc gtcatcaga
//
LOCUS       DATAAS010000272         6619 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_288279, whole genome shotgun sequence.
ACCESSION   DATAAS010000272 DATAAS010000000
VERSION     DATAAS010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6619
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_288279"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..270
                     /locus_tag="VHF08_04430"
     CDS             <1..270
                     /locus_tag="VHF08_04430"
                     /inference="COORDINATES: protein motif:HMM:NF016027.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016758 - hexosyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2067926.1"
                     /translation="ISQAIQFGKPLITIPIENHSEQLGNSNKIAKIGIGIRLEANKIK
                     ANQITCAIHQLLDDNRFQQKAEELMRLTERLDGINNIVKIIRSYF"
     gene            complement(223..1296)
                     /locus_tag="VHF08_04435"
     CDS             complement(223..1296)
                     /locus_tag="VHF08_04435"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067927.1"
                     /translation="MSNIIKKLELEHMTVTKTLCEESCFVFKVNDIVEAACSTKELFG
                     IDRVAIAKQVPNTFSQVVSAIIATGKQIILPNEKFFIKVQISSKAKVNYVGRDIAFVS
                     AGDLIEQLASTGARPAKNEHEADKIILSYIGKDYGYICIQIDKALGGMPFGYQNVRVL
                     CSIHNVLSAISSLIAIKSGFVPELLILYANSEELTQNVKLFGHIADRMGIKRHNLRIA
                     QIDLYDGLDQGLKVMLKESISAKILLQLPGKGVVLPLSATIYPAWFVEWTMKKIILAK
                     KTPWMPLMLLTDEIQQIAKVFDLEEKLLSIDNLSISTLFEKKEYRKQLRKVDILSKKA
                     MKNMKTISLKVGPNYLHDIIDAV"
     gene            complement(1465..2421)
                     /locus_tag="VHF08_04440"
     CDS             complement(1465..2421)
                     /locus_tag="VHF08_04440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067928.1"
                     /translation="MQSQPDNYIVLPLVREEQENICFPLVINVVSQYWGEEIPLTEAT
                     EMAKKYPRVRGSIMMEGIELAERHGFRTYIYKGSLKDIKKRISQGIPPIVILPGIRET
                     VQHATIVSGYNPEENRILTYVPEPDTIGAIPERKFEQDWDQEDMITLILIPKDMEDIF
                     KNENLKFKDSNRLCFEAEKLRIQDKTNLAIEKLLKSVKLDEDNPQTWCMLGGIYNELN
                     MDDALSCYQKTIKLNPRYYLAYRGLGNYYLKKKEYSLADSYYTKAIDINAYRFAPIYK
                     NRAIARLQLNNNSGAKEDLLKYIEQIPNAADKKNIEDTIRQI"
     gene            complement(2474..3034)
                     /locus_tag="VHF08_04445"
     CDS             complement(2474..3034)
                     /locus_tag="VHF08_04445"
                     /inference="COORDINATES: protein motif:HMM:NF012345.4"
                     /note="Members of this family of hydrolases with an active
                     site Cys residue belong to MEROPS family C26; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEX2067929.1"
                     /translation="MTTLVVDNLSPFTDDILDCMIELDEKYIYKKYSDVDNIYDSNTS
                     YDKVILSGRRKNSKEINMVNSKIIRYCFQTNKPLLGICYGAEIIALTLGGSIYRMNDH
                     VRGTITVNILRPNSLIPDRTSVNVYENHRYSVAKLPKDFVSLGSSSLCKYEIFSHIKK
                     RIFGTQFHPEKSERDGFALLSKFLQL"
     gene            complement(3031..3723)
                     /locus_tag="VHF08_04450"
     CDS             complement(3031..3723)
                     /locus_tag="VHF08_04450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067930.1"
                     /translation="MMELRDIDVSSPLSWIYETNFMLSYLGSSIHVMRYKDIHERMQL
                     IYLYLIYEFSFETSDNNFNIKKIAVISVSDGKNTYWLMPLIVLIDTAYVPWTSGDLLK
                     LVGYAVIYTYDDSGQLIVNGKDTFSQMFFEQYKDNNVVNSGLSLAKSALISDPLTFNE
                     AETHYLFDYSLADTKRIIPKFLKDFGSWSGECICIFEWERDDNKVNYGIMKEVNGIAE
                     KPYDSIEVDSNN"
     gene            complement(3997..5142)
                     /locus_tag="VHF08_04455"
     CDS             complement(3997..5142)
                     /locus_tag="VHF08_04455"
                     /inference="COORDINATES: protein motif:HMM:NF014011.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003896 - DNA primase activity [Evidence
                     IEA];
                     GO_process: GO:0006269 - DNA replication, synthesis of RNA
                     primer [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase small subunit domain-containing
                     protein"
                     /protein_id="HEX2067931.1"
                     /translation="MIASKDMDKSMALVKSAFREYYFKHSKNIGIPPRIGEREFGYKQ
                     FNSGIVRHLSFRTIGELLAILIREAPSDIYCSNAFYRFPTYPMQEKQWGGADLIFDID
                     AKDLHLPCEQTHSYFLCLNCGEVLERNTNSCSKCDFSKLDHISIPCNKCVLSLKKEVI
                     KLINILITDLGINKNCIEIYFSGNSGFHLHILDNGFNSLDSRSRADIVGYLMGVSMMP
                     ESIGVRKRPEGVLIKFPKSGLSYGWRKRIANKLGIDNLSTVKLNNIVQQKGGYEGFKV
                     ELSRLTREIGVRIDPHVTTDIHRVFRMPGTLNSKSGLAKMRCDNLEMFDPFIDACLLG
                     ENEVNVDAKAHVNLKLKGQSFKIKKQTERLPLYVAVYLICKGIAELG"
     gene            complement(5129..6163)
                     /locus_tag="VHF08_04460"
     CDS             complement(5129..6163)
                     /locus_tag="VHF08_04460"
                     /inference="COORDINATES: protein motif:HMM:NF016030.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067932.1"
                     /translation="MSIKLGTSDLAKYPFLNEASDYIRETHFDFEEFNRPEMSHIIDR
                     AVERIETEITKGSVYEKLDKYEIEILTFLVTLMIAKSIGTESILKKYSLFEAMRTEKY
                     LTEDLRKERNNERKRLLLFKIFEDLFKINVDLDSKDTNLFKVRVTDYLTRALNFHEEE
                     WKLINRLVHNGYVYLDADETVRLIRSELTSLIYSRIKSMTLSNLPDSIKAKVDYLRIK
                     LQPRYEYRRYQPTDYPPCIKNSLEVMNRGENLPHSARLMLATYMLAIGKSVDDIVILF
                     HNAPDYNENITKYQVEHLAGNRGSHTKYSVPSCEKLRNENLCFATEECSGITNPIQFR
                     SKLQKRHDCQ"
BASE COUNT         2056 a         1182 c          984 g         2397 t
ORIGIN      
        1 atttcgcagg ctatacaatt tggtaaaccc ttgataacaa tacctataga aaatcatagt
       61 gagcagttgg gtaattcaaa taaaattgcc aaaattggca taggtatcag gctagaagca
      121 aataagataa aagcaaacca gatcacatgt gcaattcatc aactgctgga tgataataga
      181 tttcaacaaa aggctgaaga attgatgaga ttaactgaga gactagacgg catcaataat
      241 atcgtgaaga taattaggtc ctacttttaa tgaaatagtt ttcatatttt tcatcgcctt
      301 tttagatagg atatctactt ttcttaattg ttttctatat tctttctttt caaataatgt
      361 acttatgctc aagttatcaa tagacagtaa tttttcttcc aagtcgaaga cttttgcaat
      421 ctgctgtatt tcatctgtca aaagcattaa tggcatccaa ggtgtctttt ttgcaagtat
      481 gatttttttc attgtccatt ctacaaacca tgcaggataa atcgttgcac ttaatggtaa
      541 cacaactcct tttccaggca actgaagtaa gattttagca gaaatacttt cttttaacat
      601 cacttttaga ccttgatcta atccatcata aagatcaatt tgtgctattc taagattatg
      661 tctcttgata cccattctat cagctatatg tccaaatagc ttcacattct gagtaagctc
      721 ctcagaattt gcatataata tcagaagctc gggcacaaaa ccggatttta tagctattaa
      781 agaagatatt gcagagagaa cattatgtat actgcataat actctaacat tttgatatcc
      841 aaatggcatg ccaccaagtg ccttatctat ttgaatgcag atgtatccat aatctttacc
      901 aatataagaa agtattattt tatcagcttc atgttcattt tttgcaggac gtgctcctgt
      961 agatgctaac tgttctataa gatcaccagc agaaacaaaa gctatgtctc ttcctacata
     1021 atttaccttc gccttactac ttatctgaac tttgataaaa aatttttcgt tcggcagtat
     1081 gatctgtttt cctgttgcta taatggctga aacaacttga gaaaaagtat ttgggacttg
     1141 tttagctata gcaactctat ctattccaaa taattctttt gtactacatg cagcctcaac
     1201 tatgtcatta accttaaaga caaagcatga ttcttcgcag agggtttttg taaccgtcat
     1261 atgttctaat tcaagctttt ttattatatt tgacattaac atatttttgc agttagctga
     1321 aaaagctgac gggaagacta gtagaacatc attcaaatga tttttattcc aatttcggat
     1381 aattatatct gatgttttta aaaaagaatt atggatcctc tctttcttta tctctgtttc
     1441 tatatgtatt attatttttt acttttaaat ctgtcttata gtatcttcaa tatttttctt
     1501 atctgctgca tttggaatct gttcaatata ctttaataga tcttctttag cgccagaatt
     1561 gttgttgagt tgtaatcttg ctattgcacg atttttgtat attggagcaa atctataagc
     1621 attgatatca attgcctttg tatagtaact gtctgcaaga gaatactctt tcttctttag
     1681 ataatagttg cccagacctc gatatgcaag ataatacctt gggttaagct taattgtttt
     1741 ttgatagcag ctaagggcgt catccatatt gagttcatta tagataccgc caagcatgca
     1801 ccaggtttgc gggttgtcct cgtctaattt aacagactta agtaattttt caatagcaag
     1861 atttgtttta tcttgaattc gtaatttttc tgcttcaaaa catagtctgt ttgaatcttt
     1921 aaatttgaga ttttcatttt tgaaaatatc ttccatatct ttaggtatga gtatcaacgt
     1981 aatcatatcc tcttgatccc aatcttgttc aaattttcgc tctggaatgg cgcctatagt
     2041 atcaggttct ggtacatagg ttagaatcct gttctcttca ggattatagc cagatactat
     2101 agttgcatgt tgcacagttt cacgaatacc tggtagaata actattggag gaattccttg
     2161 tgatattctc ttttttatat ccttcaatga gcctttataa atatatgtcc taaaaccgtg
     2221 tctttctgca agctctattc cttccatcat tatagatcct ctaactctag gatatttctt
     2281 tgccatctct gttgcttctg ttaatggtat ctcttcaccc cagtactgtg aaacaacatt
     2341 aattaccaaa ggaaaacaaa tattttcttg ctcttctctt accaaaggca agacaatgta
     2401 gttatctggc tgtgattgca cgatgattca tttatttaaa gtttcaagga aaataaaatc
     2461 cttcttgcta acctcatagt tgcaggaatt ttgacaataa tgcaaaacca tctctttcac
     2521 ttttttcagg gtgaaactgt gtaccaaaaa tcctcttttt tatatgggag aaaatttcgt
     2581 atttgcagag actagagctt ccaagtgaaa caaagtcttt gggtaatttt gctacgctat
     2641 atctatgatt ttcataaaca ttgactgaag tcctatcagg tatcaaagaa tttggtctca
     2701 aaatatttac tgtaattgtg ccccgaacat gatcattcat tctataaatt gaccctccaa
     2761 gtgttaatgc aattatttct gcaccataac aaattcccaa tagtggctta ttagtttgaa
     2821 aacaatatct tattattttt gaatttacca tgttgatctc cttactattc tttcgtcttc
     2881 cagataagat aactttatca tatgaagtat tactatcata aatattatct acgtcagaat
     2941 attttttgta gatatatttt tcatctaatt caatcataca atcaagtata tcatctgtaa
     3001 atggtgaaag attgtccacc acaagtgttg tcaattatta ctatctacct ctatagaatc
     3061 atatggtttt tctgctattc cattcacctc tttcattatg ccatagttta ctttgttgtc
     3121 atctctctcc cattcaaata tacatataca ctcaccactc catgaaccaa aatctttgag
     3181 aaactttggg attattctct tggtatcagc aagagaataa tcaaacaggt aatgtgtctc
     3241 tgcttcattg aatgttaatg gatctgaaat taatgcagat tttgccaacg acaagcctga
     3301 gtttactaca ttgttatctt tgtattgttc gaagaacatt tgtgaaaaag tgtccttgcc
     3361 gtttactatc agctgtccac tgtcatcgta agtataaatt acagcataac caactagctt
     3421 taacagatca cctgaagtcc agggaacata agcagtatct attaagacaa taagtggcat
     3481 cagccaataa gtatttttgc catcacttac agaaattacg gcaattttct ttatattaaa
     3541 attattatca gatgtttcaa aactaaattc ataaattaag tatagatata ttaattgcat
     3601 tctttcatgt atgtctttat atcgcataac gtgaatagaa cttccaagat atgataacat
     3661 aaagtttgtt tcatatatcc agcttaatgg agaagacaca tcaatatctc tcagttccat
     3721 cataaaagaa tttatttatt tatttattgc atcactatct attttactga gaggaaaagc
     3781 agaccaagtc tcatcgaaaa taccttttcc actacttttg ccatagtata taatttttat
     3841 ttgaaatcct tagcaggatc tataatattt tctgcggcgt ctctaacatt agcactcaat
     3901 tatataccta ttatataccc tatcattgaa ttattgagtt tccgtaaagg aaattaaatc
     3961 gtacaaatac aacagagagg ataacttaat atgggtttaa cccaactctg caattccttt
     4021 gcagattaaa taaactgcta catataatgg taatctttcg gtctgtttct ttattttaaa
     4081 tgactgacct tttagtttta aatttacatg tgctttagca tctacattaa cttcgttttc
     4141 tcctaaaaga catgcatcga taaatggatc aaacatttca aggttgtcac atctcatctt
     4201 agcaagtcca cttttactat tcaatgtacc tggcattcta aatactctat gaatatcagt
     4261 tgttacatga ggatcgatac gtacgccgat ctcgcgagtc aatctagata gttctacttt
     4321 aaacccctca taacctcctt tctgttgtac tatattattc aatttgacag ttgacagatt
     4381 atcaattcct agtttatttg ctattctttt acgccagcca taagaaaggc cgctctttgg
     4441 aaatttaatt agaacacctt ctggtctttt ccgtactcct atactttcag gcatcatact
     4501 aacacccatt agatagccta caatgtccgc tctagatcgc gaatcaagtg aattaaatcc
     4561 attgtctaag atatgaagat gaaagccgct attaccagaa aaatagattt cgatacaatt
     4621 tttgttgatc cctagatcag ttattaatat attaattaat tttattactt ctttttttag
     4681 ggacaacaca catttgttac aaggaattga tatgtgatct agcttggaga aatcacattt
     4741 agaacatgaa tttgtatttc tctctaatac ttctccacaa tttaaacaga gaaagtagga
     4801 gtgtgtctgc tcgcaaggta gatgcaaatc ttttgcatca atatcaaaaa ttaaatctgc
     4861 tccgccccac tgtttttcct gcatagggta ggttggaaat ctatagaatg catttgagca
     4921 gtagatatct gatggagcct ccctgatcaa aatggctaaa agttcgccaa tagttctaaa
     4981 tgaaagatgt cgcacgatcc ctgaattaaa ttgcttatat ccaaattcac gttcgcctat
     5041 acgtggcggg ataccaatat ttttactatg tttaaaataa tattctctaa atgcgctctt
     5101 tacaagggcc atactcttgt ccatatcttt actggcaatc atgtcttttt tgaagtttgg
     5161 acctaaattg aattggattc gttattccgc tacattcttc agttgcaaaa caaagatttt
     5221 catttcgaag tttttcgcaa gaaggaacag aatattttgt atgactacca cggttgccag
     5281 ccagatgttc tacttgatac tttgtaatat tctcattata atcaggtgca ttatgaaaaa
     5341 gtattacaat atcatctaca ctttttccaa ttgccagcat atatgtcgca agcatcagtc
     5401 gtgcagaatg tggaagattt tctcctctgt tcattacctc taatgagttt tttatgcatg
     5461 gtggataatc tgttggctga tatcttcgat actcataacg cggttgaagc tttattctca
     5521 aatagtctac ctttgccttg atagagtctg gtaagtttga taaagtcatt gacttgatcc
     5581 gagaataaat taatgaagtc agctcgcttc taatgagtct tacagtttca tcggcatcaa
     5641 gatagacgta tccgttatgg actaatctgt taatcaattt ccattcttct tcatgaaaat
     5701 ttaaggctcg tgtaagataa tcagttactc taactttgaa tagattagta tctttggaat
     5761 ctagatcaac attaatttta aataagtctt caaaaatttt gaataacaga aggcgttttc
     5821 tttcattgtt tctttctttc cttaaatcct cagtcaaata cttctcggtt ctcattgctt
     5881 caaacaatga atacttcttg agtatggatt cagtgcctat agattttgcg atcatgagtg
     5941 tgacaagaaa tgtaagtatt tctatctcat acttatctaa tttctcgtag actgagccct
     6001 tggttatttc tgtctctatt ctctctactg ctctgtcaat aatatgactc atttcaggcc
     6061 ggttaaattc ttcaaaatca aaatgcgttt ctcgaatgta atctgaagcc tcatttagaa
     6121 atggatattt tgctagatcg cttgttccaa gttttataga caatgtctat tgcaagtttc
     6181 tcttcatact agaataaaaa cgccacgtaa gattagagca gttaattgtt acattttagc
     6241 catatcattt atcttagaat aaattttcac gttgcagtca ttaccaacat acataaaatt
     6301 caattgataa aaaatgaaat tggctgcaat atcatttcaa atattgggta acaagtcaac
     6361 aggaatatgt agtaagttga ttattgtgca acatgtttta aagaccttca agaaaatgtg
     6421 aatcagcaaa atacgccatt atgagactcc aatgagctta acggcttggg aaacatcgag
     6481 tggcatttat gtgtaaataa aatggtaatc ataacaaatt ttggcataat tacaaaattt
     6541 tcatttatag taatagcatt ttcaatatat atggggaatt atttgattca aattaaatat
     6601 ctgaatagat gtatttaat
//
LOCUS       DATAAS010000273         3040 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2983759, whole genome shotgun sequence.
ACCESSION   DATAAS010000273 DATAAS010000000
VERSION     DATAAS010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3040)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3040)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3040
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2983759"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            188..481
                     /locus_tag="VHF08_04465"
     CDS             188..481
                     /locus_tag="VHF08_04465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEX2067933.1"
                     /translation="MPVAILPDISEQHCIGCALCVEICTALGPDVLRVKPVEGWKRGK
                     AFVFYPERCISDGACIGVCPTKAIFWMRPMDYTPGQPIPLKKNAVFVKGWEEG"
     gene            985..1467
                     /locus_tag="VHF08_04470"
     CDS             985..1467
                     /locus_tag="VHF08_04470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067934.1"
                     /translation="MVEWNEQIKAHLVWIWGEEEGFLKRGKEGMLVITDRRIAFISKT
                     NMTYRIHDVHAMRQLKRFKEGENVFRPLEGYKIKDLEDDLNKSSENLDIPFRQVLDIT
                     QHEKRWGTLLKINVNLIDKSKIYKFSIVRGWVKYPLKDPIEFQRMDWTDLINLFKTSS
                     "
     gene            1651..2139
                     /locus_tag="VHF08_04475"
     CDS             1651..2139
                     /locus_tag="VHF08_04475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067935.1"
                     /translation="MRVTFTLFIGDNVFTSNGKNIGKISKIDNEHFTVYNRGLIQDEE
                     FQIPISAISHFDIKTSGEDSSVILNVNEEQIKHGYEIVSKKPNSELVNGKYNSQYKIS
                     LEKEVIHYETIQHFEENVASPTDKLPSDEEYICDMCMEKFNNPDKLQQHRAEKHSAPT
                     GI"
     gene            complement(2760..>3040)
                     /locus_tag="VHF08_04480"
     CDS             complement(2760..>3040)
                     /locus_tag="VHF08_04480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067936.1"
                     /translation="IKEYTGFEMPGEYWMLHHILPDAIMYVPSYLLAAVRAKELDIYL
                     QNKFGEKWWMNENAGKHLREIMKSGAKIELERFSKLDSSLFIKEIISI"
BASE COUNT         1061 a          432 c          495 g         1052 t
ORIGIN      
        1 ttagttaagc aagttaataa tataatttgt aactgctatc atgacataag tttagtatat
       61 taaatttgaa aaggttaatg aaaatgaaca tggactacca cttaaggtct atactcatat
      121 tactgcgtta taaaaacggc atagggttta aatagtttca acatggatcg aaggttaagt
      181 gaattagatg ccagtagcaa tacttccgga tattagtgaa caacactgta ttggctgtgc
      241 tctctgtgta gagatttgca cggctcttgg tccagatgta ctgagagtaa agccagtaga
      301 agggtggaag agaggtaaag catttgtctt ttacccagag agatgcatct ccgatggagc
      361 atgcattggt gtttgcccaa caaaggcaat cttctggatg agaccaatgg actacacacc
      421 aggacaacca attccattaa agaagaatgc tgttttcgta aagggttggg aagaaggtta
      481 acctgtcctc aattgagtcc taaaaactct ttttttaaat ttttatcttg ctaaattctt
      541 tctttaatct ataaaattaa tttattaatc attaattaat tgttttaaac taaaaattca
      601 tagatctaat attattatta aggtttaata tataaatgaa aaataataat taattaattt
      661 ttattaaagc tcttttaata ataataactt tatatcatca tagcagtagt tctatatgta
      721 gttaatctaa gaaattattt gttcttcttt agactaccta ttgatcttgt atagatgagt
      781 gtatggaaat tttatttatt taaacaaagt ttgggtttgc aaatactgta tgtgtggaag
      841 tgtgcacaca ctattggtac tgtttaatag aaaatatggt tccagcagat aaaaagcaaa
      901 atatgttata cctcgttctt atccttttcc aattctttaa gagatacgaa gttttttaat
      961 tagcaaaata ttgtgtgagg catattggta gaatggaatg aacaaatcaa agctcatctg
     1021 gtttggatat ggggtgaaga agagggtttt ttgaaacgag gtaaagaagg catgcttgtt
     1081 atcactgata gacgcatagc ttttatttca aaaacaaata tgacttatcg aatacatgat
     1141 gtgcacgcta tgaggcaact taaacgattc aaagaaggtg aaaatgtatt ccgtccatta
     1201 gaaggataca aaataaaaga tttagaagat gatcttaata aaagtagtga aaatcttgat
     1261 atacctttta gacaggtctt agatatcact caacatgaga agcgatgggg aacgctatta
     1321 aaaattaatg ttaaccttat agacaaatca aaaatataca agttttcaat tgttagaggc
     1381 tgggtaaaat acccacttaa agatccgatc gagtttcagc gcatggattg gacagatctt
     1441 attaatcttt ttaaaacctc atcatagaga gatgtatagt gatatttttg ctttttctgt
     1501 attataatat tgcactatag atgaagaaaa ataattttta aacaatgaaa gagattatgg
     1561 gatataatat cttatgaaat taaaaacaaa tactaaaggt atcttttttg tattgtaatc
     1621 ccaatagatt gataaatacg atgccactct ttgagggtta catttacttt gtttattggt
     1681 gataatgttt tcacatcaaa tggaaagaat attggtaaga taagtaaaat agataatgag
     1741 catttcacag tatataaccg aggccttatc caagatgagg aatttcaaat tccaatttct
     1801 gctatttcac attttgacat aaagacaagt ggagaagatt catctgtcat actaaatgta
     1861 aatgaagagc agattaaaca cggatatgaa attgtaagta aaaagcctaa ttcagaactt
     1921 gtaaatggta aatacaattc tcaatataaa atatcactag aaaaggaagt gattcattat
     1981 gaaacaatac agcattttga ggaaaatgtt gcttctccta ctgataaact tccttcagat
     2041 gaagagtata tttgtgatat gtgtatggaa aagtttaaca atcctgacaa gttgcaacaa
     2101 caccgagcag agaagcattc tgctccaact ggaatttgag gaaaatctat gttattgagg
     2161 tcttcaatga tcgtagttaa attctttcat ttatattttg tttaaaagat attcctatct
     2221 gattcatgca tagtatttca ctatcttctc ccgtaagcat tttgtagcta gatgatcatt
     2281 gacttacttc ttctttttct actcctcctc ctccacccct ttctctaatc ttgctcttat
     2341 tgttgtacaa tagatgctat ctgagatcat tttaagccgg attagaggag aagacatatt
     2401 gtagtactga taatccagat gagaataata atatcttaat aaagacagct taaagttata
     2461 gttaataata aaacgcatta taatcttcta tcgatagttt gttgaaagta tattcggtaa
     2521 ctttaacgat gatgattatt attatttaac tagctgtata ttcattctta atgataaatt
     2581 atgctatgat ggatttaata attttaattt taattaattg acattttgta cgttaaagta
     2641 cgttagttta ttaaacctct atttttatct acggaaagtt gcgtttgcat catgaataac
     2701 aattttctac acattataat catgacaaac acaacgaaag attatcataa aaagttgtat
     2761 tatatgctga ttatttcttt aataaataag ctactatcca atttagaaaa tctttccagt
     2821 tctatttttg caccagattt cataatctcc cgcaaatgct ttcctgcgtt ctcattcatc
     2881 caccattttt caccaaattt attttgcaga taaatgtcta attctttagc acgtacggct
     2941 gcaagtaagt aactcggaac atacattatt gcatctggaa gaatgtgatg aagcatccaa
     3001 tattcacctg gcatttcaaa tcctgtatat tctttaatca
//
LOCUS       DATAAS010000274         1504 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2457961, whole genome shotgun sequence.
ACCESSION   DATAAS010000274 DATAAS010000000
VERSION     DATAAS010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2457961"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            102..857
                     /gene="tsaD"
                     /locus_tag="VHF08_04485"
                     /pseudo
     CDS             102..857
                     /gene="tsaD"
                     /locus_tag="VHF08_04485"
                     /inference="COORDINATES: protein motif:HMM:TIGR00329.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
     gene            complement(858..1187)
                     /locus_tag="VHF08_04490"
     CDS             complement(858..1187)
                     /locus_tag="VHF08_04490"
                     /inference="COORDINATES: protein motif:HMM:NF025825.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEX2067937.1"
                     /translation="MSPIEPRSGEKRILQEDCAEDKLKNGILTLTNQRLIFEKTEGRM
                     VVLSKKTGEVVLEVPLDKISSVKAEGLLLKKVTIVVDQKQYKFGVFNNSEWAKSILKQ
                     QYDNKIR"
     gene            1221..>1504
                     /locus_tag="VHF08_04495"
     CDS             1221..>1504
                     /locus_tag="VHF08_04495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067938.1"
                     /translation="MQQRKKLIKRGAEADIYLGCWYGKTTISKIRKAKSYRHRTLDDE
                     IRKSRTVNEANMISASKLTGVRSPFLYFVDPFYAEIIMEFVEGIVAMDVI"
BASE COUNT          488 a          258 c          281 g          477 t
ORIGIN      
        1 gacatcatac cgaaaaatct acagatattt tgatgcattc gttagacgaa gcaaaaatca
       61 gtataaagga tgttgatatt attgcctaat ctgcaggacc aggacttgga ccatgtctaa
      121 gagttggagc cgttgttgga agaactttat ctactttcta taaaaaacca cttattcctg
      181 ttaatcatgc cttagggcat atagaattag gagctatgct aacacaagct tcggatccgc
      241 tggtactatt agtgtctggt ggccatacaa tgatacttgc attctctaaa aataaatggc
      301 gagtttttgg ggaaacactt gatattacta taggacaact gctcgaccaa tttggacgat
      361 cactaggttt tgcctcccct tgtggcgaca aaatagaaca acttgcaatt ggatcatcag
      421 aaagatatct gcgtttacct tatattgtaa aaggaaatga tgtctcgttc tccggattgc
      481 ttacatatgc aaaaaaactt gcattggaca aaaagaatga atattcagat gtatgttatt
      541 ctctacaaga aacagcattt gctatgatca cagaaacgat agaacgtgct atgtcattta
      601 ctgataaaaa agaaatgatg atagtaggag gagttgcagc aaacaagaga cttacccaaa
      661 tgctagctat cgcatgtaaa agacaaaata gaaaatttca tatctgccct atccatttcg
      721 caggcgataa tggagctcaa attgcctgga cagggatact ctattataat aagagtaaga
      781 agggtgtaag cataaaagaa tcctttattc gacaatcctg gagaatagat agtgtggatg
      841 ttaattggcg ttattaatta tctaatttta ttgtcatatt gttgcttcag aattgacttt
      901 gcccactcgc tattattaaa aacgccaaat ttatattgct tttgatctac aacaattgta
      961 acttttttta acagtaaacc ttctgccttt acagatgata ttttatcaag aggaacttct
     1021 agcactacct ctccggtctt ttttgaaagt accaccattc ttccctcagt cttttcgaag
     1081 atgagacgtt ggttagttaa agtgagtata ccatttttta atttgtcctc tgcgcaatcc
     1141 tcttgtagga tccttttttc tccactcctt ggttctatag gactcatgtt tttatcttta
     1201 aattcgatga tatattacta ttgcaacaaa gaaagaaact gattaaaaga ggagctgagg
     1261 ctgacattta tcttggctgt tggtatggta aaacaacaat atcaaagatt agaaaggcaa
     1321 aatcatatcg tcatagaacc ttagatgacg aaattcgtaa gagtcgaaca gtcaatgaag
     1381 ccaatatgat ttctgcttca aaactaacag gagttagatc accattctta tatttcgttg
     1441 atccttttta tgcggagatc ataatggaat ttgtggaagg tatagttgca atggatgtga
     1501 taag
//
LOCUS       DATAAS010000275         1966 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3528299, whole genome shotgun sequence.
ACCESSION   DATAAS010000275 DATAAS010000000
VERSION     DATAAS010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1966)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1966)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1966
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3528299"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..224
                     /locus_tag="VHF08_04500"
     CDS             <1..224
                     /locus_tag="VHF08_04500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067939.1"
                     /translation="FTYYYFVIVIMQSVLFHLIQYHKLQKYPCGIKYFKNNGSFIKLK
                     EPLLLKYFISQDISKAYNIGSKEIGPIAL"
     gene            complement(438..1592)
                     /locus_tag="VHF08_04505"
     CDS             complement(438..1592)
                     /locus_tag="VHF08_04505"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2067940.1"
                     /translation="MASVSHSNIVIGEEVCFFRSQNCCVCFVDMVNSTEVTADINEPE
                     KIRNYYGIFLNTMAAIARNYRAKIIKNAGDCLIFYFPETIDSTNESAFRDVLECCITM
                     ISARCTINTKLYQEKLPSVSYRISANYGRVEVARSSTSQSDDLFGSTMNMCAKINSKA
                     LPNAIVIGGDLYQIVKSFSSSFDNNYYFEGVDEYLSTDFNKDNNHHHPYPVYSLSIKN
                     NSGSSNNYGKALNLLLKPTSKKTAGEEVSVKKQPQQQRKYSANIMLVDDEPDTLFTYK
                     EFLISEGYDVEAFTDSRKASEHFAEMNSSSYYNLVVMDMRMPGLNGLQLYYRLTAMNK
                     AIKVLFVSALDAIEELVSVLPSVNYNNIIRKPVEKEYFINKIRSVLLLPS"
BASE COUNT          678 a          306 c          312 g          670 t
ORIGIN      
        1 aatttactta ttattatttt gttatagtca taatgcaatc ggtcctattt catttgatcc
       61 aatatcacaa gcttcagaaa tatccttgtg gtataaagta ttttaaaaat aatggttcat
      121 tcattaaact gaaagaacca ttacttttaa aatactttat atcacaagat atttctaaag
      181 cttataatat tggatcaaaa gaaataggac cgattgcatt atgactataa caaaataata
      241 ataagtaaat taatttagaa tgaaattagc tagttattat aataattgac gctatatttg
      301 gagagaatat aattgagatg gcgaatataa aaccaacata tctattcatc cataatctta
      361 ccttgaatac tttgcttttc aaatatcatt gctggcacag tccctattaa caatatatat
      421 tttttacaag tataatatta ggaaggtagt agtaatactg atcttatctt attaataaaa
      481 tattcttttt ctactggttt tctaattata ttattataat ttacactagg caatacactt
      541 actagttctt ctattgcatc aagagcagag acaaatagaa ctttaatagc cttgttcatt
      601 gccgtcagtc tataatataa ttgaagccca ttaagaccag gcattctcat atccataact
      661 accaaattat agtaagagga ggaattcatt tcagcaaagt gttctgatgc tttccttgag
      721 tctgtaaatg cttctacatc atagccttca gagatcaaga actctttgta agtaaagagt
      781 gtatctggtt catcgtctac taacataata ttggcagaat attttcgttg ctgctgtggt
      841 tgttttttaa cacttacttc ttctcctgct gtttttttag aagtgggttt taataggagg
      901 tttaatgcct taccataatt attgctacta ccactattat tcttaattga tagggaatat
      961 acaggatatg gatgatgatg attattatct ttattaaagt cagtactcaa atattcatct
     1021 acaccttcaa aataataatt attatcaaag gaagaagaaa aagactttac aatttgatac
     1081 aaatcgccgc ctatcactat tgcatttggt agtgcctttg agtttatctt tgcacacatg
     1141 ttcatagttg aaccaaatag atcatcactt tgagaagtag atgacctagc aacctccact
     1201 ctaccataat tcgcactaat cctatagcta acagatggta gtttttcttg gtataacttt
     1261 gtatttatag tacagcgggc tgatatcatt gttatgcaac attcaaggac atctctgaaa
     1321 gctgattcgt tagtagaatc tatagtttca ggaaaataga atatcaaaca atcaccagca
     1381 ttttttatta ttttggctct atagtttctt gcaattgcag ccattgtgtt aagaaaaatt
     1441 ccataatagt ttctaatctt ttctggttca ttaatgtctg cggtaacctc agtagaattc
     1501 accatatcaa caaaacaaac acaacaattt tgtgagcgaa agaagcatac ttcttctcca
     1561 attacaatat tggaatgaga tacagatgcc atattgagta tacgcaatat gcctatataa
     1621 cgcgtggtga taaacggtat ttaatgccat aaaatatcca ttaatttact atataaacac
     1681 ctagaagata ggttctattc attactgaat ccacagtgat acatcataga tggtggtata
     1741 acactactac cgacggattt tgcagatagg aaatagagga tggtgctgct gaagaagaag
     1801 gaacgaagaa gaataggtag aagttagcga tgctgatggc gacggagatg ctggagattg
     1861 tgatgcaggt tagtaggacg ctaaatgata attttgagaa tactattaat agcattccag
     1921 atattctaat tgactaaaat aattaggaga ggaataagta acagac
//
LOCUS       DATAAS010000276         2204 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3528342, whole genome shotgun sequence.
ACCESSION   DATAAS010000276 DATAAS010000000
VERSION     DATAAS010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3528342"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(302..1129)
                     /locus_tag="VHF08_04510"
     CDS             complement(302..1129)
                     /locus_tag="VHF08_04510"
                     /inference="COORDINATES: protein motif:HMM:NF000796.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase electron transfer
                     subunit"
                     /protein_id="HEX2067941.1"
                     /translation="MRTDINKIRIVIIDQIVQESSTIRTLIFKDNLCSKSKPGQFVMV
                     WIPGAEELPMSLMWWDKKDYAAISIHKQGYGSTELHNKCKGDIIGIRGPYGNHFKIKK
                     DYRKVMLIGEGVGLIPLLKLARMLNECRVDTTLIIGARSKDEIVFEKQANEFLSETMH
                     RLVITTEDGSYGIHGHATDVMAQILENEKFDNIYTSGPELMMKKVFDLASSQSLPVQA
                     RLGRYMKCGIGICASCCIGEQLVCKDGTVFNEKKLRFMTEFGRINRDKSGRKAIIYY"
     gene            complement(1113..2057)
                     /locus_tag="VHF08_04515"
     CDS             complement(1113..2057)
                     /locus_tag="VHF08_04515"
                     /EC_number="1.3.1.14"
                     /inference="COORDINATES: protein motif:HMM:NF013355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HEX2067942.1"
                     /translation="MHRGLKKSQQHFNQSLAVDIANLRFRNPTMLASGFLGISQDVFN
                     RLYLSGAGAVVSKSISIMPIEGYRNPTVVSLENSSYINAVGLSNPGAEEFSNEIAHNK
                     KVPIIISLVGTSEKEFPLMLKMFNHLNIVGYEINLSCPHVAKMGMEVGDDPEMVGCIV
                     RTIKSNTSKPVIIKVGVGSTDILKIAKVAIDSGADAITAINTIRAMTINIETGMPVLS
                     NRIGGLSGKSLKHIAIRCVYEISKNLQIPVIGCGGIFTWQDAVEFMLAGASVVQLGSV
                     IGYQGITAFRNISCGIQKYLENKGFKKVTEIIGLAHRY"
BASE COUNT          678 a          436 c          317 g          773 t
ORIGIN      
        1 tctaaccgac gatacatttc tgaaccagat agaatatcaa taacgaattc gttatataaa
       61 tccaataatc tcaattaatt gtatatttag atatattcga tcaaaaacac atatgtggtc
      121 agcttttcta ttttttataa ctactaatac ctgtatgatc aatgaatcaa gatgccatct
      181 tctaagcaga tttggtgctt taattgtaat tctatgaaaa ttatatgtct tcacgattct
      241 tgccctgaac attgtgatct ttgcaatagg attagacgat taaggaagta atgaatcagg
      301 gttaataata tattatagcc ttgcgtccag atttatctct atttatccgt ccaaattctg
      361 tcataaatct gagttttttt tcattaaata cagtaccatc tttacataca agttgttctc
      421 caatacaaca acttgcacat ataccaattc cacatttcat atatcgtccg aggcgtgctt
      481 gtaccggcaa tgattgcgat gaagcaagat caaaaacctt tttcatcatt aattcaggtc
      541 cagatgtgta tatattatca aatttttcat tctctaaaat ctgagccatg acatctgtgg
      601 catgtccgtg aattccatag cttccatctt cagttgtgat aacaagtctg tgcatagttt
      661 ctgaaagaaa ctcatttgct tgtttttcga atactatctc gtctttggat ctagcaccaa
      721 taatcaaagt cgtatcaact ctgcattcat taagcattct tgccaatttt aatagtggaa
      781 taagtccgac tccctctcca attaacatta cttttctata gtccttttta attttgaaat
      841 gattaccata tggaccacga attccaatta tgtcgccttt acatttgtta tgaagctcgg
      901 tcgagccata tccttgttta tgtatgctga tagcggcata gtctttttta tcccaccaca
      961 taagactcat tggtaattct tctgctcctg gtatccagac cataacaaat tgtccaggtt
     1021 tagacttgga acaaagatta tctttgaaaa ttagagtcct aatagtagaa ctctcttgta
     1081 caatttgatc gataatgaca atccttattt tattaatatc tgtgcgcaag ccctataatc
     1141 tctgttactt tcttaaagcc cttattttct aaatatttct gtataccaca agaaatattt
     1201 ctaaatgctg ttatcccctg atatcctatc acactgccta attgtacgac tgatgctcct
     1261 gcaagcataa attcaactgc atcttgccaa gtaaatatgc ctccacatcc gataactggg
     1321 atttgaagat tttttgaaat ttcgtaaaca catcttatag cgatatgctt taatgattta
     1381 ccagataatc ctcctattct gttactaaga actggcattc cagtttctat attaattgtc
     1441 atagcacgaa tagtattaat tgcagtgatc gcatccgctc ctgaatctat ggcaactttt
     1501 gcgattttta gtatatccgt agatccaacg ccaaccttta ttattactgg ctttgaggta
     1561 tttgatttga tagttctaac aatacagcca accatctcgg gatcatcacc tacttccatt
     1621 cccatcttcg caacatgagg acaggataaa ttaatttcat atccaacgat attaagatga
     1681 ttaaacattt ttaacataag aggaaattct ttctcggatg ttcctacaag acttattatt
     1741 attggaacct ttttattatg agctatctca tttgaaaatt cctcagcgcc aggattcgag
     1801 agacctacgg catttatata actactattc tctaaagaga caacagtagg atttcgataa
     1861 ccctcaattg gcataatact tatggattta cttacaactg ctcccgcacc tgatagatag
     1921 agcctattaa aaacgtcctg agaaatccca agaaaacctg aagcaagcat cgtcggatta
     1981 cgaaatcgca aattcgctat atcaaccgct aaagactgat tgaaatgctg ttggctcttt
     2041 ttcagtcctc tgtgcattgt cttaattgct aaacctctta gttaatattt tattcctaac
     2101 tatgttaaac aagaatgttt tttcttgttc tacaaaaaaa tgtacggata atattaattg
     2161 ttaatggcgt agatgtataa cattgttgtt taatacagta aata
//
LOCUS       DATAAS010000277         4057 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4071733, whole genome shotgun sequence.
ACCESSION   DATAAS010000277 DATAAS010000000
VERSION     DATAAS010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4057)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4057)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4057
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4071733"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            130..501
                     /locus_tag="VHF08_04520"
     CDS             130..501
                     /locus_tag="VHF08_04520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase"
                     /protein_id="HEX2067943.1"
                     /translation="MMETRRIILRESQIMKIQYITGIAALLVVAVHILMRLIMPYNMS
                     LEYENVVVNYHNIPYALLLESILILIAIHGFNGLRVILLEFRQNKIWENGVTIFTIAA
                     MIAIIAYGTRTIVIANQLGLN"
     gene            504..1352
                     /locus_tag="VHF08_04525"
     CDS             504..1352
                     /locus_tag="VHF08_04525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase/fumarate reductase
                     iron-sulfur subunit"
                     /protein_id="HEX2067944.1"
                     /translation="MMEIIKKIGMIRNRNVKDDNDNNNRKSTPRDKVVIKVFRANRIK
                     GDPVRYDSFEVPVQRWTTVLDALIYAKSNRDSSIGIRYSCRMASCGSCGMKINGIPRL
                     ACYTKISELEGSTITCEPLANFPHIRDLVTDFSQFFNHHKEMKPYIHNENADIIDREK
                     LSEFKQSPEDVDKYLQFSYCIRCGLCYSACPTVATDTKFPGPQALSQAYRYYADTRDN
                     DNKERINIVDDRHGIWRCHFAGSCSVVCPKGVDPALGIQLLRGHLMGLSKNEKKIAKL
                     ENRTRN"
     gene            complement(1565..1885)
                     /locus_tag="VHF08_04530"
     CDS             complement(1565..1885)
                     /locus_tag="VHF08_04530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein"
                     /protein_id="HEX2067945.1"
                     /translation="MSQDIQQTRRLIFDELTKIVDPEIGVSIMELELVDKVDINAANV
                     NIDLHLTSPFCPAVFGFKIAQDVRDNVYKVQGIEGVKVNVSNHFMADAINKQVNESKL
                     PPKS"
     gene            2081..3559
                     /gene="argH"
                     /locus_tag="VHF08_04535"
     CDS             2081..3559
                     /gene="argH"
                     /locus_tag="VHF08_04535"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEX2067946.1"
                     /translation="MYRSRPRGTLDDDTLKFLSSIDIDQGILNYDIIGSEAHSMMLYD
                     IGILSMPELKKILRALEDIKKNPSQLKTDTFEDIHESLEAFVIKQAGIDAGGKMHTGR
                     SRNDQVILDIRMKVRDDINNICLAIIDLIDSLLEKATENKESVMPMYTHLQQAQIGTF
                     SHYLLSYSDALFRDMDRLYITYGRNNQSPLGACAIGGSTINIDRRTTAVFLGFDGLVR
                     NSVDATSSRDALIEYTSGISIFMTTLSRLAEDFILWSTAEFGYLEISDEYSSTSSAMP
                     QKKNPDPLELVRAKASSVLGNLVSILSIVKALPSGYSRDLQELKPHLWRASSTALEAV
                     KIVNRVVKSIDVHKGRMQESANNSYALSIDIAEQLVVKKGIPFRIAHKLVGSLVEKAI
                     RKNKTQVIMLEEEDIKEVLEKIKLNLQPNELMHFIQEVTPQRALELRISSGSPNPKEQ
                     VEMIILSRHRLAGYKEGVPKRKKYVDSAFENLTRTVENYLKD"
     gene            complement(3928..4022)
                     /locus_tag="VHF08_04540"
     tRNA            complement(join(3928..3990,4013..4022))
                     /locus_tag="VHF08_04540"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(3964..3966),aa:Gln,seq:ttg)
BASE COUNT         1401 a          657 c          755 g         1244 t
ORIGIN      
        1 tatgatgcga tatcacttaa ctatcggcag aagtctggaa tatgggttgc attaatatta
       61 tccgctctag caatgctgta cggatcaagt gtactttttg gcggagaata gaaaataaaa
      121 ggagaggtaa tgatggagac aagaaggata atcctgcgcg aaagtcaaat aatgaagata
      181 cagtacatta caggaatagc ggcacttctt gtagtggctg tgcatatctt gatgcgtctg
      241 ataatgccat ataatatgag cctggagtat gaaaatgtag tcgtaaacta ccataatatt
      301 ccctatgcac ttcttcttga gtcgatactt atactcattg cgatacatgg ctttaatggc
      361 ttaagagtca tattgcttga gttccgacag aataagatat gggagaacgg tgttacaata
      421 ttcactatag cggcgatgat agccataatt gcatatggta ctagaacaat agtaatagcg
      481 aatcagctag gattgaatta gaaatgatgg aaataatcaa aaaaatagga atgataagaa
      541 ataggaatgt aaaagacgat aatgataata ataatagaaa gagtacacct cgcgataagg
      601 ttgtcataaa agtattccgt gctaacagaa tcaagggaga tcctgtcaga tatgattcct
      661 ttgaggtgcc agtacagcgt tggacaactg tccttgatgc tcttatttat gcaaagagca
      721 atcgtgacag tagcattgga ataagatatt catgtcgaat ggcctcatgc ggctcttgtg
      781 gaatgaaaat taacggaatt cctagacttg cttgttacac aaagatttca gagttagagg
      841 gtagtacaat cacctgtgaa cctcttgcaa atttccctca tattcgtgac cttgtgacag
      901 atttttcaca attttttaat catcacaaag aaatgaagcc ttatatacat aatgagaacg
      961 cagatataat agatagggaa aaattatccg aattcaaaca aagtccagaa gatgttgaca
     1021 aatatttaca gttctcctat tgtatcagat gtgggttatg ttactctgca tgtcctactg
     1081 tagcaacaga tacaaaattc cctggtcctc aggctctatc acaagcttat agatactatg
     1141 cagatacacg ggacaatgat aacaaagagc gaattaatat tgtagatgat agacatggta
     1201 tttggagatg tcattttgct ggctcatgta gtgtagtttg tccaaaaggc gtagatccag
     1261 cattgggaat tcagttatta cgaggtcatc ttatgggact ttcaaaaaat gaaaaaaaaa
     1321 tagcaaaact ggaaaatcga actagaaatt gatacaaaaa ggaaggcgaa aataatttca
     1381 ttttttatct ctgctaattc gctatgtggg gagattaaaa cacatcttat cgtaggatca
     1441 attaatcaaa ttctgatatc gagtctatga tgaaacaaat taatatctag tttgaaaata
     1501 ctttttggaa atgataacgt taactttatg ctaattcaga ctaaattgga ctaatttaaa
     1561 aattttagga tttaggtgga agcttacttt catttacttg cttatttatc gcatcagcca
     1621 tgaaatggtt gctaacattg actttgacac cttcaatccc ttgaacttta tagacattgt
     1681 ctctgacgtc ttgagcaatc ttgaaaccaa atactgcggg acagaatggg cttgtcaagt
     1741 gtaaatcgat atttacgttc gctgcattaa tatctacttt gtcaactaat tctaattcca
     1801 ttatagagac accaatttct ggatccacaa tcttagttaa ttcatcaaat attaatctac
     1861 gagtctgctg aatatcctga ctcatgacaa cattaaattt gtacaaacca tatataacta
     1921 ttgcacagaa ttggaaaaga tgaaccgtcc gttgatccta aatatagaat caaaattata
     1981 gcattattaa cagattttga tttttttcaa caatggcatt ggctatatcg tcatatatat
     2041 atataatatc ttaaaataaa actattttat tagactattt atgtatcggt cacgaccgag
     2101 aggtacactc gatgatgaca ctttgaagtt tctctcctcc atagatattg atcaaggtat
     2161 attaaattat gacataatag gaagcgaagc acattctatg atgttgtatg atattggcat
     2221 tttgtctatg ccagaattaa agaaaatctt gcgagctctg gaggatatta aaaagaatcc
     2281 ttcacagcta aaaacagaca cttttgaaga tattcatgaa tcactagaag catttgtgat
     2341 aaaacaagct ggcatagatg ctggcggtaa aatgcatact ggaagatcga gaaatgatca
     2401 ggtaatactt gatattagaa tgaaagtgcg tgacgatatt aataacattt gtctagcaat
     2461 tattgatctg attgattctc tattggaaaa ggcaaccgag aataaagaaa gtgtaatgcc
     2521 catgtatact catcttcagc aagctcagat aggaactttt tctcattatc ttttgtccta
     2581 ttccgatgcg ctttttagag atatggatag actttatatt acatatggaa gaaacaacca
     2641 atcacccctg ggcgcatgtg caataggtgg atcaacaatt aacattgata gaagaacaac
     2701 tgctgttttc ttaggttttg atggattagt aagaaattct gttgacgcaa ctagttcacg
     2761 ggatgcgctt atagagtata cttcagggat ctcaatcttc atgactacgc taagtagatt
     2821 ggctgaagat tttatactct ggtcgactgc tgagtttgga tacttggaga tctctgatga
     2881 atatagctca acatctagtg caatgccgca gaaaaagaat ccagatcctt tagaacttgt
     2941 cagggcaaaa gcatcctctg ttcttggtaa tttggtatcg atcctctcaa ttgtaaaagc
     3001 tcttccatcg ggttacagca gagacctgca agagctaaaa cctcatctat ggagagcatc
     3061 aagtactgct cttgaagctg taaaaatagt aaacagagtt gtaaaatcaa ttgatgttca
     3121 caaagggaga atgcaagaat cagcaaataa tagctatgct ctatcaattg atattgcaga
     3181 acaattagtt gtgaagaagg gaataccatt tcgtattgct cataaactag tcggatctct
     3241 tgttgagaaa gcaattcgta aaaataaaac ccaggttata atgttagaag aagaagatat
     3301 taaagaggtg ttggaaaaaa ttaaattaaa tttgcaacca aacgaattaa tgcattttat
     3361 tcaagaagtt actcctcaaa gagctcttga gttacgaatc tcttccggtt ccccaaatcc
     3421 aaaagaacag gtagaaatga ttatcctttc taggcatagg ctcgctggtt ataaagaggg
     3481 agttccaaaa cgaaaaaagt acgtcgattc tgctttcgag aaccttacga gaactgttga
     3541 aaattactta aaagattaac aaaattctca atgataataa caaagacctt tatgatgata
     3601 actcttttgt agatagcttg gagataaaat tgcattgaat caaatctata taatattgat
     3661 tatcaaaaaa tactgagaac agacgataac atcaaaagcg tataatatag atttcgtttg
     3721 aataattttc gtttccggga ggaagtagat aattccactt cactttcata ttttgtattc
     3781 tttatttttt agaagtaatt ccaaacgatg acatttttat tgttcaaaga taacagtaaa
     3841 tagcagaaat tgatgtttat tgcctgaata tcaatataat attatttgaa aattattctt
     3901 ctactataat taaacaaaaa gaaaacttag cccggcccag attcgaactg gggtcaaagg
     3961 ctccaaaggc ctctatgctt ggccactaca ttcgacggaa tttcactttc ctctaccggg
     4021 cttccgggca tattttcgta tattttacta tctttag
//
LOCUS       DATAAS010000278         2338 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4071932, whole genome shotgun sequence.
ACCESSION   DATAAS010000278 DATAAS010000000
VERSION     DATAAS010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2338)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2338)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2338
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4071932"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            231..542
                     /locus_tag="VHF08_04545"
     CDS             231..542
                     /locus_tag="VHF08_04545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067947.1"
                     /translation="MGKRQFIIDTGNEQILVEGQVHRNVAIKYLMKRRRSLLMTKDPN
                     KIETLFSNLPKTIKIIGKQVTRSYTVKWQREGAEDFHGSRFVFVLNTEENEEKHTNPI
                     M"
     gene            661..1590
                     /locus_tag="VHF08_04550"
     CDS             661..1590
                     /locus_tag="VHF08_04550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EF-Tu/IF-2/RF-3 family GTPase"
                     /protein_id="HEX2067948.1"
                     /translation="MNSINFVLLGDSSIADELGKKGTTTDIAIYDKKTSDYIYTWTLP
                     VTYPDKIQSLLQAVNIAEYAILNVIKLDKYLGEEIIALDYVNFKDGFILHSYDVDENK
                     LKMLIKNTSVSEFKLLDNIEQLKQEMSQLRPKYIQGPVMIEIDHAFDVKGVGTVVLGV
                     IKQGTVKVHDQLKIMPIAKDILIKSIQMHDDPVLESKSPARVGLAIKGIYADNINRGD
                     IICPPNTMEASSEKVSVKFKKSAFFKGDISENQTYLISIGLQIKPAKVKPIGGDMLEI
                     ISEKPFVFFHRQTCVLLKPDSVGTRIIGKAIIQ"
     gene            1702..2334
                     /locus_tag="VHF08_04555"
     CDS             1702..2334
                     /locus_tag="VHF08_04555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF99 family protein"
                     /protein_id="HEX2067949.1"
                     /translation="MTSRILKMKIDSNKCYNFTRQFHPEKRGIRIFGIAESFKKSNST
                     STLGGVVMRRDLIIDGIVFGSATLKGDDSTKNIYSMLRSLRRNDINCIMLDGLIISLY
                     NIIDGEKLNNITGIPIIAITFEDSRGLEEHIRHHFLEKSEMKLEQYRKLGNREQVILR
                     TEKSLYIRYWGLSLKGALNTLNAFTLQGSIPEPIRVAKLLARAHRNSINS"
BASE COUNT          870 a          359 c          402 g          707 t
ORIGIN      
        1 ggtctttttc ccttatattc caataaaagt tcttgtgcta cctaacttaa agagattatt
       61 gttttattgt attgcagttg aaagataaag gaactcaaaa cactatttgt atcaaaatac
      121 aaacaaatat ttgcactcga tagagatgct agagaaacgt ctcaatattt tatccttctt
      181 gcgtttttac cataaagctt ttctagcaat ttctttaaca actttactac ttgggaaaga
      241 gacaatttat tatcgataca ggtaatgagc agattcttgt tgagggacaa gtgcatagaa
      301 atgtagcaat aaaatacttg atgaaaagac ggagatcttt gcttatgacc aaagacccaa
      361 ataagatcga aacattgttt tccaatctac ctaaaactat aaaaataatt ggtaaacaag
      421 tcactcgatc atatacagtg aaatggcaaa gagaaggtgc agaagacttt catggttcgc
      481 gttttgtatt tgtactcaat actgaagaaa atgaagaaaa acataccaat cccatcatgt
      541 gatattagat tctcctacaa tcaggtaact tacagtatgc tcgttcagaa tgtattatta
      601 tacgagatca agtaaaaaca gttttattta tttacttgct tacagttaat tacaaatatt
      661 ttgaatagta ttaatttcgt tcttcttgga gattccagca tcgcagacga attaggaaaa
      721 aaaggcacaa ccacagatat tgccatttac gacaaaaaaa catcggacta tatttatacg
      781 tggacattgc ctgtcacata tcctgacaaa attcagtcac tattgcaggc tgtaaatatt
      841 gcagaatatg ctatattaaa tgtcataaaa ttggataaat atctaggaga agaaattatt
      901 gctttagatt acgtcaattt caaagacgga tttatactcc actcgtatga cgtcgacgaa
      961 aataaactaa aaatgttaat caaaaatacc tcagtctctg aatttaagtt attagataac
     1021 atagaacaat taaaacaaga aatgagtcaa ttaagaccaa aatatattca aggacctgtt
     1081 atgattgaga tagatcacgc ttttgatgtt aaaggagttg gaacggtagt actaggtgta
     1141 ataaaacaag gaacagttaa agtacatgat cagttgaaaa ttatgcctat tgcaaaagat
     1201 attctaatta aatctattca aatgcatgat gatccagtat tggaatctaa gagtccagcc
     1261 agagttggac ttgcaattaa aggtatatat gctgataata tcaacagggg cgatataata
     1321 tgtcctccaa atacaatgga agcatcttca gaaaaagtct ccgtaaaatt taaaaagagt
     1381 gcctttttca aaggagatat ttccgaaaac caaacatatc tcatatctat tggattacaa
     1441 attaaacccg ccaaagtaaa accaatagga ggagacatgc ttgaaattat atctgaaaaa
     1501 ccttttgtgt ttttccatag acagacatgc gtgctattaa agccagatag tgttggaact
     1561 aggataatcg gtaaagcaat tatccaatga aaagccttat caaaaagatc tatccagatg
     1621 atatagtgct gcaattagat agctgctatc agagttgtgt accatatcgc aatatcattt
     1681 gctgttttca tagagtgttt attgacttca agaattctta aaatgaaaat agatagtaat
     1741 aaatgctata acttcactcg gcagtttcat ccagaaaaga gaggaattag aatttttggc
     1801 atagcagaga gtttcaagaa gtctaattca acgtcgactc ttggaggtgt tgtgatgcgg
     1861 cgtgatctca taatagatgg aatcgtcttt ggcagtgcta cattgaaagg tgatgattct
     1921 accaaaaata tttacagtat gttaaggtcc ctacgaagga atgatataaa ttgtataatg
     1981 ctagatggac tcattatcag cttgtataat atcattgatg gtgaaaaact caataatatt
     2041 acaggtattc caataattgc aattacattt gaagattcta gaggtctaga agaacacata
     2101 agacatcatt ttttagaaaa gtcggagatg aaacttgagc aatatcgcaa actgggtaac
     2161 agagaacaag tcatattaag aactgaaaaa tcactctata ttcgatattg gggtctgtca
     2221 ctaaaaggag cattgaatac acttaatgct tttactttac aaggatcaat accagaacct
     2281 attagagtag caaaactctt ggcaagagct catagaaata gtattaattc ttaaataa
//
LOCUS       DATAAS010000279         2869 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2459422, whole genome shotgun sequence.
ACCESSION   DATAAS010000279 DATAAS010000000
VERSION     DATAAS010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2869
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2459422"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(420..1232)
                     /locus_tag="VHF08_04560"
     CDS             complement(420..1232)
                     /locus_tag="VHF08_04560"
                     /inference="COORDINATES: protein motif:HMM:NF023568.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2067950.1"
                     /translation="MPLPDKKEVDTLYYEYGKDKNKHVLFIHGLGSSSIVWRDIPQAL
                     SEHFHTITVDLIGFGGSVKPNTADYTIKGFSKFIVDFLREKIGIKENEKISIVGHSLG
                     GYIAAEVSIENKNLIEKLVLIDSSGMLKEPTPLLKDYRVAAMQEDPVSRYEKVKRVFE
                     DLYARPSRLLPVLVDLFNYTIEKPGAKHAFQSAFDNSTTTQLGSERLKQIEDIPCLII
                     WGEKDKLIPIEYASMFTESLKRAKFEKIEDAGHSPFVEKTALVYEKLRTFLI"
     gene            complement(1549..2448)
                     /locus_tag="VHF08_04565"
     CDS             complement(1549..2448)
                     /locus_tag="VHF08_04565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067951.1"
                     /translation="MNKRHNPLFTIIIIIIITFAIIATVIIFIYYYYPQILLLPPHVP
                     STTTAIHNFKVREIYPTKQNGREWFINIDDPTEDRIFDPRSEITREPDGSWQIKGRGG
                     SGKYEDQVRMNVNTPKGQQQWKNVEITGYAKIISAESSKDRLSWYARGGRHSSSVPCE
                     GTSLKGDIRVNGEVFWQKEIWHTGGYTDERAKAKVTHSILGRWIGWKVVIYNINNDQA
                     VKMESYLDDKNNNNWKKVTELIDKGGWYADTSDKVFYSANCDRPKDYIITNSGPIVTF
                     RSDNMMWDFIDLSVREIQPPSLS"
     gene            complement(2631..>2869)
                     /locus_tag="VHF08_04570"
     CDS             complement(2631..>2869)
                     /locus_tag="VHF08_04570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067952.1"
                     /translation="LTYFNHSVGLTNDDLKALISSAATGDYYEGPGILIPTRNTQLFR
                     WCLDNGLRLVQQLTLMTIGLYNEPAGSYMPSILY"
BASE COUNT          921 a          529 c          417 g         1002 t
ORIGIN      
        1 tttatatgaa gtgtgaaaag atagaatacg aagaatacat atctctccat ttttgccaga
       61 atcaaagaca ataactctga gccttgagtt gaatagaatg aatatatatg tcaagggatt
      121 acgaatttaa ttcaaatttg cacgtagctc tcgtcctctg ccatattttt gttgacttta
      181 gagtaaaatt aagcatattc tccttctata tccatcaaaa aattgattat ttattgtaat
      241 ccatttaaac ttgtttgact cttccttaaa ttagataata aaatgagtag tcagccaaaa
      301 gaagaaggag aagcattaca agaatcggaa actgaagaag aattaataga agaagaagaa
      361 cctgtgaaat aataagcgta taacatatcg tataacatat cgtatcgtat agtatcgtct
      421 tagattaaga atgtacgtaa cttttcatat accaaggctg tcttctcaac aaatggtgaa
      481 tgacctgcat cttctatttt ttcaaattta gcccttttga gactctctgt gaacatacta
      541 gcatattcaa ttggtataag cttgtccttt tcaccccata tgatcaaaca agggatatct
      601 tcaatttgtt ttaatctttc tgatccaagc tgtgttgttg tactattatc gaaggctgat
      661 tgaaatgcat gctttgcgcc tggcttttca attgtgtaat taaacaaatc aaccaacacc
      721 ggaaggagcc ttgaaggacg cgcatacaga tcctcaaata cccttttgac cttttcatac
      781 cttgatactg gatcctcttg catggctgca acacgataat ctttcagcaa cggagttggc
      841 tccttaagca tacctgatga atctatcaac acaagttttt ctattagatt tttattctct
      901 attgaaactt ctgcagctat ataaccacct aatgagtgcc ccactatgct tatcttctca
      961 ttctctttta ttccaatttt ttctctgaga aaatcaacaa tgaatttgct aaatcctttg
     1021 attgtatagt ctgctgtatt tggtttaaca cttccaccaa aacctattaa atcgacagtt
     1081 attgtatgaa aatgttctga taaagcttgt ggaatatccc tccaaacaat cgatgaggaa
     1141 ccaagaccat gtataaataa aacatgctta tttttatcct ttccatattc gtaatataac
     1201 gtatcaactt ctttcttgtc tggaaggggc atttacaatg aacgttaaaa ttagcacact
     1261 atgctttatc taattatctg ttacacttgt tgctatgaaa aaccataaaa attaaaaaag
     1321 tcaaacctat aataaaacac agaatagaaa atttcgatgt ttactttcta tgtagaaaga
     1381 aaaggtttaa acaaatcaag ttacttgttg atccaacgtg tttgttaaat catataataa
     1441 atataataat agcatgactc tctaacttag ccctttgtat attagcaagc taattaataa
     1501 taaattaaat ttaatttact ttaagcagtt tataaaagaa tactattttt aagataatga
     1561 cggaggctgt atctctctta cacttaaatc tataaagtcc cacatcatat tgtctgatct
     1621 aaaagtaact attggaccag aatttgttat tatataatct ttgggtctat cacaattagc
     1681 actataaaac accttatctg aagtatcagc ataccaacca cctttatcaa ttaattctgt
     1741 tacttttttc caattattat tatttttgtc atctaaatat gattccatct tcacggcttg
     1801 gtcattgttt atattatata tcactacttt ccatccaatc catcttccta gaattgaatg
     1861 agtaacttta gctttagctc tctcatctgt ataaccacca gtatgccata tctccttttg
     1921 ccaaaagact tcgccattta cacgtatatc tcctttcaga gaagtacctt cgcacggaac
     1981 actgctgcta tgtctaccac ctcttgcata ccaacttaga cgatcttttg atgattctgc
     2041 tgaaattatt ttagcatatc ctgttatctc tacatttttc cattgctgtt gacctttagg
     2101 agtatttaca ttcattcgta cctgatcttc atatttccct gaaccacctc tcccttttat
     2161 ctgccatgat ccatcaggct ctcgtgttat ttcagatcga ggatcaaata ttctgtcttc
     2221 tgtaggatca tctatattga taaaccattc tcttccattc tgttttgtag gatagatctc
     2281 ccttactttg aagttatgta ttgcagtagt agtgctagga acatgtggtg gtagcaataa
     2341 aatttgagga taataatagt aaatgaatat aataactgta gcaatgatag caaaagtaat
     2401 aataatgatg atgatgattg taaataacgg attatgtctt ttattcaaaa atttaattcc
     2461 tcatttgtta taattttaat atgctatcta tgatagcatt tcattttaat ctatctagat
     2521 aaatactatg ttgtaaatga ttgacagcac attggaaagc attctcaaat caaacacatg
     2581 agtttctata tcttcctact atcttgctct ttagaattgc ttctatgttc tcaatataga
     2641 attgaaggca tataggaacc agcaggttca ttatacaatc caattgtcat aagggtgagc
     2701 tgctgaacta acctcagtcc attgtcaaga caccagcgaa atagctgggt gtttcgggta
     2761 ggaatcagaa tacctggccc ttcataataa tcaccagttg ctgctgagga aatcagagcc
     2821 ttgaggtcat cattggtcaa acctactgaa tggttaaagt atgttaatc
//
LOCUS       DATAAS010000280         5811 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3530402, whole genome shotgun sequence.
ACCESSION   DATAAS010000280 DATAAS010000000
VERSION     DATAAS010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5811)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5811)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5811
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3530402"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1028
                     /locus_tag="VHF08_04575"
     CDS             <1..1028
                     /locus_tag="VHF08_04575"
                     /inference="COORDINATES: protein motif:HMM:NF012493.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helicase-related protein"
                     /protein_id="HEX2067953.1"
                     /translation="ETDHRYNTIMTLLPPIKKYPIKDAVKDRRLARPIIIPLKVDLTD
                     EEQKIYDTCSAKIKNISNRFKKYDAKSMSLLLSKGGFVSGLAKAWFLNVRKRKLLLSC
                     AENKLSTSINTIIKKHPHERIMIFSESLDSINKLRDRLESEGIKAMAIDSKMNSTERQ
                     VILSKWGRDFYPLLSVHTLEIGYDVPQVRIEIILASTSNMNQVIQRIGRVIRKYEGKE
                     LALIYVVYVSDTKDDNILNVVNKAIDTKQEERGEGKNSMKKRLRGAYNLIESSLYEPV
                     IVEEIHNQKKLFRVRSSKEKSKFYDVDVENKTCSCPDFKFRLTKCKHILAIEFVSPSD
                     TSTTAAA"
     gene            2134..3009
                     /locus_tag="VHF08_04580"
     CDS             2134..3009
                     /locus_tag="VHF08_04580"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEX2067954.1"
                     /translation="MSSEGEFLLGCSGWSYADTPDKGGWTEVFYPDVNTKRLRYYSQF
                     FNTVEMDSTFYNKFYSNMTKGTFIGMVRATPENFQFSVKLPETITHEKRLDIRRGAMT
                     DFEEFLDKISPLKTSNKLGAILIQLPPSFTVNDFKNIEVFLSRLPNSGNYDYAIEFRH
                     PSWKTEGPWEMLKQYNIAAVITDSPPKENLHFLSDVVITADHSFVRFHGRNTKGHYWY
                     NYLYTKEELIPWVEKVSQIRKETKILRAYFNNHWGGKAVVNALQFKEMTSNAPLSENE
                     RNALEHAKTYLSASS"
     gene            complement(3050..3742)
                     /locus_tag="VHF08_04585"
     CDS             complement(3050..3742)
                     /locus_tag="VHF08_04585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018032531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEX2067955.1"
                     /translation="MPPLISIGTSGYTYSWNEAKPTPFKWYMTQGFNSVEINASFYRF
                     PTQSWVKTWLTAPEDFSFSIKVHRSITHYTKLKNRSLELWNRFRKTLESLEKKIDFWL
                     FQMPSNYKYKQENLEAIRAFFENTNLRNKAVIEFRDSSWWKAAKEIANIGIVFCSVNA
                     PCLPHSLMSTNGAVYLRLHGSKEWYNYIYSEKELDNILSSIKKLKADKKMIYLNNDHG
                     MLQNGLYLLKHV"
     gene            complement(3805..4695)
                     /locus_tag="VHF08_04590"
     CDS             complement(3805..4695)
                     /locus_tag="VHF08_04590"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX2067956.1"
                     /translation="MRLCLEVWGKDYNKIKETCLLAEKLGYYGFYYGESLTDIDLDCW
                     TALSSLSSITNRIKLGPVITYLFPQYRNIALLAKQALTFQEISDGRLEFRTGAGATLQ
                     YATQWWHPYGIEYPKEKDRVSILEEGLQVLQMLWHKSEVHFNGNFFRLNGAILQNTGK
                     YIPVTIAAKRKKMISIAARFADIWEASYLSPEQFHKLNSDFDNISKKFNRSVLKSIEL
                     DVIIAESPADLKYKEKLFAMERGPSVYNQIVRNGLVGIPEMIADRVKEYIDAGIGQFF
                     LAFQDPFDSKALELFMDAVK"
     gene            complement(4737..4997)
                     /locus_tag="VHF08_04595"
     CDS             complement(4737..4997)
                     /locus_tag="VHF08_04595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067957.1"
                     /translation="MPVDSEIRFKVTPRDYCFLEGLAKFYYDIGVIPKPSVHSLAKFA
                     IIKAANEWQIVQTTALQRGDRRRKVIRSITGDENNKLGSASP"
BASE COUNT         1978 a          975 c          926 g         1932 t
ORIGIN      
        1 atgaaactga ccatcggtat aatactatta tgacactatt gccaccaata aaaaaatatc
       61 caataaaaga tgcagtaaag gatcgtagac tcgctagacc aataattatt cctctgaagg
      121 tagatctgac tgatgaggaa caaaaaatat atgatacgtg ctctgccaaa atcaagaata
      181 tttctaatcg ctttaagaaa tatgatgcta aatcaatgtc tttactatta tctaaaggtg
      241 gcttcgtcag tggattggct aaggcatggt ttttaaacgt tagaaaaaga aaacttctgc
      301 tcagttgtgc agaaaataaa ctgtcaacat caataaatac aataataaaa aaacatccac
      361 atgaacggat tatgatattt agtgaatcac ttgattctat caataaactt agagatagat
      421 tagaatcaga aggaataaag gcaatggcaa tagatagcaa aatgaattct actgaaagac
      481 aagttatcct atctaaatgg ggtagagact tttatcctct gctctctgtt catactctag
      541 agataggata tgatgtacca caagttagaa tcgaaattat tttagcaagc acctctaata
      601 tgaatcaagt tatccaaaga ataggaagag taataagaaa atatgaaggt aaagaattag
      661 ctttaattta tgtagtatat gtttcagaca ctaaggatga taatatatta aatgtggtaa
      721 acaaagcaat agatacaaaa caagaagaaa gaggagaagg taagaatagt atgaaaaaac
      781 ggcttcgagg agcatataac ctaatagaat caagtttata tgaacctgta atagttgaag
      841 aaattcacaa ccaaaaaaaa ttgttcagag tcagaagcag caaagaaaaa agcaaattct
      901 atgatgtaga tgttgaaaac aaaacatgtt cttgtcctga cttcaaattt agattaacaa
      961 aatgcaaaca tattcttgct atagagtttg tatcaccctc agatacatct actacagccg
     1021 cagcttagaa ataccttaat tttaagataa tatgatagaa tttatcttca cacatccatc
     1081 gaagtattct tatatcattg gcaaattttt atgaaaccat ttcaaaagtc aacaactaga
     1141 ccaaagtacg agcctattcc tatctgatat cacaatgtaa ttcattgatc tgtcaaatta
     1201 tacggatcaa tattggaatt acaattgtat tgctttgatt gagaaatgat ttcattgaac
     1261 tctagcgaca cttattatat ttgtgaatac tcagatttgg tttaaactca ttaaaagtac
     1321 aatatcattt ctataaaact tgagtttcac tagaacatat tactagatag gtctttttta
     1381 ttggcttgtt aatattttaa gcatatatcc tttgcaaatt caaaaatgca tcagcttatt
     1441 atggtcacta aaaactctcg gttattgtat catgtctaaa tatattttga actattttaa
     1501 ctaattttat tttcttatct tctttgaacc atccttggat gctctgtgtg tttattatgt
     1561 ctttaaataa tattgttctg caattaatgc agagccagca tgaacaaatg tatcttcaca
     1621 atctttctgt aatattgctg cgtctcattt tacaaacctt ctgtgctgca taccatagcc
     1681 ttgtctaacc aagagtttgt gccatttagt attttcccaa tatctctttt gataatgtca
     1741 ttctgttaca agtttgattt gtttttgttg ttatttttaa catcaccaaa atatttttat
     1801 tggcatgatc attgaaaagc ttgaatttgt ttatctttac ttacgatatg ggaatgtgat
     1861 tatgtatttg atcgttattt gcaacaaaga taaagatatg accgggaaaa actaacgcat
     1921 atgtctgata tccatatcac aacaaactat agaataaaaa tttccttttt ttcgagtatg
     1981 tggtgtctct gctaattcat ttaaaattga gtccttttca gctggattat tgtttatgta
     2041 tttatttaat tttcaatcag tggagagact aatcaactat agtaatacaa tcatagtaat
     2101 atatgagaga ttaagaaaat attaaatatt aaaatgtcat cagagggaga attcctatta
     2161 ggctgttctg gatggagtta tgccgatact ccagacaaag gaggctggac agaagtattc
     2221 tatcctgatg tgaatactaa aagattacga tattactcac aattcttcaa tactgtagag
     2281 atggactcta ccttctacaa caaattctat tctaatatga caaaaggtac ctttatagga
     2341 atggtcagag cgactccaga aaattttcaa ttttcagtca aattaccaga aacgattaca
     2401 catgaaaaaa gattagatat cagaagaggc gctatgacag attttgaaga attccttgac
     2461 aaaatatcac cgttaaagac atcaaacaaa ttaggtgcta tattgatcca gcttcctcca
     2521 agttttacag ttaatgattt caaaaatata gaagtatttc tttcacgatt gccaaatagt
     2581 ggtaattatg actatgctat tgaattcagg catccatcat ggaaaactga aggaccttgg
     2641 gaaatgctaa agcaatacaa tattgcagca gtaattacag attcaccacc aaaagagaat
     2701 cttcattttc tgtctgatgt agttattaca gcagaccatt catttgtaag gttccatgga
     2761 agaaatacaa aaggtcatta ttggtataac tatttgtata caaaagaaga actaatacct
     2821 tgggtcgaaa aagtctcaca aataagaaag gaaactaaga ttctgcgtgc ctattttaat
     2881 aaccattggg ggggaaaggc tgttgttaat gcactgcaat ttaaagagat gacttctaat
     2941 gccccattat cagaaaatga aagaaacgca ctagaacacg ctaagacata tctgagcgct
     3001 agctcgtgac tatgagaaaa cacatatcat gctcaataaa ggtgaggctt tacacatgct
     3061 ttaataagta tagtccattc tgcagcatac catgatcatt attaagatat atcatcttct
     3121 tatctgcctt cagcttttta atacttgata ggatgttatc aagttctttt tctgagtata
     3181 tgtaattata ccattcttta gaaccatgaa gtctaagata cacggcgccg tttgtggaca
     3241 ttaagctatg gggaagacat ggcgcgttaa cggaacaaaa aactatgcct atatttgcaa
     3301 tttcctttgc agctttccac cacgatgagt ctctaaattc tataacagcc ttgtttcgta
     3361 agttagtatt ttcaaagaat gctcttattg cttctagatt ttcctgctta tatttatagt
     3421 tagatggcat ctgaaacagc cagaaatcta tcttcttttc aagagattca agagttttcc
     3481 taaatcgatt ccatagttct agtgatctat tctttagttt ggtataatgg gtaattgagc
     3541 gatgtacctt aatggaaaaa gagaagtctt caggggctgt tagccaagtc tttacccaac
     3601 tttgggtagg aaaacgatag aaactagcgt taatttcaac tgagttaaaa ccctgagtca
     3661 tgtaccattt aaatggggta ggtttagctt cattccaaga atatgtgtat cctgatgtcc
     3721 ctattgatat taacggtggc aagacctctc tactattgat gttgaactca ttaaatagga
     3781 ttaattagtt tgtttacgcg tcctttactt tacagcatcc atgaacaact ccaaagcttt
     3841 ggaatcaaaa ggatcctgaa aggcaaggaa aaactgtcct ataccagcat cgatatattc
     3901 cttaactctg tccgctatca tttctgggat ccccaccaat ccatttctta ctatctgatt
     3961 gtatacacta ggccctcttt ccatagcaaa tagtttttct ttatatttca aatcagccgg
     4021 agattctgca ataattacat ccagctcaat agactttaat acacttctat taaatttctt
     4081 agagatgtta tcaaaatctg agtttaattt gtggaattgt tctggcgaca gataagatgc
     4141 ttcccatata tctgcaaacc tggccgctat gcttatcatt ttctttcttt ttgctgcaat
     4201 ggttacaggg atatacttgc ctgtgttttg taatatggca ccatttaatc tgaaaaagtt
     4261 tccattaaaa tgaacttcag atttatgcca tagcatttga agaacctgca aaccttcttc
     4321 aaggattgaa actctatctt tctcttttgg atattctatg ccataaggat gccaccattg
     4381 agtagcatat tgaagtgttg ctccagcacc agttctaaat tccaatcttc catcagatat
     4441 ttcttgaaat gttaatgcct gtttggctag aagtgcaatg tttctatact gaggaaagag
     4501 atatgttata actggaccta attttattcg attggtgatg gaggataagc tagataatgc
     4561 ggtccagcaa tcaaggtcaa tatctgttaa tgattcacca taataaaatc cataataacc
     4621 cagcttttca gctaagagac aggtctcttt aattttgttg taatctttac cccatacctc
     4681 taaacataga cgcataatgt ccacatttat tttgaaaata cttaatgcta ctgtgattac
     4741 ggtgaagctg aacctaattt attattttca tcaccagtaa tagaccttat aaccttcctt
     4801 cttctatctc ctctttgtaa agctgtcgtt tgcacgattt gccactcatt ggctgctttt
     4861 attatagcaa attttgctag tgaatggaca ctaggctttg gaataactcc gatatcataa
     4921 taaaacttgg ctaatccctc caaaaagcaa taatcacgag gtgttacctt aaaacggatt
     4981 tctgagtcaa caggcatatt tgttattcat tattattcta gtatatttat atatataaat
     5041 ctttcattta actatacata actacttgcc tttccactag ggggagtaat tgagtggaaa
     5101 aacaagtgga aaatccgtta aacaagtgga aaaagtatgt ggaaaatgtt acgtgtaaca
     5161 actggtgaaa tagaagatct atactttcat atatagcagc ttttactcta ccaatgtcca
     5221 tccgatagtg gtaagaattt cgtaaaagaa tatcagttta tacccactgt ctctttattg
     5281 tcataattaa caaatatact aatgtgcccg tcaggtgcca aagaaagtat acccgtagaa
     5341 ttttaattcc atactggttt gagaagcttg acatcctatc ccatccaaaa taaatcagtg
     5401 gatgactctt aggggctacc aacatcggac catttgctag agttgaaatt aacatatcta
     5461 cgtgattatt aattagtgat atacaatcaa gaaaaactgg ctctcctata tctactgttc
     5521 aaagtcatat tccctttggt aagtgaatgg gaattgttaa gtactttaaa acttgtcctc
     5581 agaaagatgt tcagctactc ttattggata ctcaatatca atgtttattt gatatcaatt
     5641 ttatttaata aatacaattc attattcgat aagcgcatct ttgatttcaa gatatatact
     5701 ctattgggct tgtgaactta attcttccat aatatatata taaataaata tatacataaa
     5761 ttcttaattt gaattagaaa atacaaatct taattataac aactttaaat c
//
LOCUS       DATAAS010000281         3182 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_295942, whole genome shotgun sequence.
ACCESSION   DATAAS010000281 DATAAS010000000
VERSION     DATAAS010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3182)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3182)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3182
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_295942"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            165..767
                     /locus_tag="VHF08_04600"
     CDS             165..767
                     /locus_tag="VHF08_04600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067958.1"
                     /translation="MINYHKLAIPAIAIFAAGGIISFLLAYNFYPEKHVNVNIGGKCY
                     ELLDSAYTKYQDLAANNKIEILKLQLDAIETEQAILPVTFSGRQSDIMEFKNKYDINI
                     ISDKAISEDISVDKRIVRATITKDELKKVVNDLAVKDVNPLSRTVAGSIGLQPTSYIT
                     SEEGKKISLNSTQFLRKGIQEIINTQDGVKPAECRNSVRY"
     gene            complement(862..1047)
                     /locus_tag="VHF08_04605"
     CDS             complement(862..1047)
                     /locus_tag="VHF08_04605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067959.1"
                     /translation="MYHNVIEANTIAPTESTINEFMISQVKERVVEKKAFTKQKGIAT
                     VLYFIMWDMLDNKNIPI"
     gene            complement(1179..1568)
                     /locus_tag="VHF08_04610"
     CDS             complement(1179..1568)
                     /locus_tag="VHF08_04610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067960.1"
                     /translation="MQPKLFVIHLLLPLVGVLIVGLILFSEVLTLTIAAASTAAATEM
                     KDMESEDKVIKEELEPMETEEIEDEEEDNSAKQEEEGKEEEQESNDDTAGTGLEEEDN
                     IMIDNNYSSYVDNVPLELPFDNPMPFP"
     gene            complement(2439..2750)
                     /locus_tag="VHF08_04615"
     CDS             complement(2439..2750)
                     /locus_tag="VHF08_04615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067961.1"
                     /translation="MTKAFVYGASIIHMEKIPQQTIIVMTAAAIAIVMWISTVAMAMI
                     PQAAYAQQDERNPSSLSSSADGCASDQLPASINGRTQCIRQGECYSEQFEGKEVKHCN
                     Y"
BASE COUNT         1023 a          530 c          517 g         1112 t
ORIGIN      
        1 cttacctatt attcaagaac tgtgccttgg ctaattctac atatattatc tatgcaagta
       61 catactaagc taattgtgag aattacgaga ttgattatga attactttta tattgtatta
      121 gtcatttttc attataacag agaaggctta aggtttgaag agatatgata aactaccata
      181 agcttgcgat acctgctatt gctatatttg ctgctggtgg aataatcagt ttcttattag
      241 cgtacaactt ctatcctgaa aagcatgtca atgtcaatat aggtggtaag tgctatgagt
      301 tgcttgattc ggcatataca aaatatcaag accttgcagc taataataag atagagattt
      361 tgaaattaca gcttgatgct atagagacag aacaagcaat actacccgtt acattcagtg
      421 gacgtcaatc agatattatg gaatttaaaa ataaatatga tattaacata atatctgaca
      481 aagcaataag tgaggacatt agtgttgata aacgaatagt aagagctaca ataacaaaag
      541 atgaattgaa aaaagttgta aatgatttag cggtaaagga tgtcaatcct ttaagtagaa
      601 cggtagcagg tagtattgga ttgcagccta cctcatacat aacatctgag gaaggaaaaa
      661 agatttcatt aaattctacg cagtttttgc gaaaaggtat ccaggaaatt attaatacac
      721 aggatggagt aaagccagct gaatgtcgaa attcagtacg ctactaataa taatttcaat
      781 tgtaatggtt tttaactaat taaaagcatt aaccgattaa aaaataagct aatcctaaaa
      841 atttggatag ttttcctctt gttatatggg aatatttttg ttatctagca tatcccacat
      901 tataaagtat aataccgttg caatgccttt ttgttttgta aatgctttct tttctactac
      961 tctttccttc acctgtgata tcataaattc gttaattgta ctttctgttg gagcaattgt
     1021 atttgcttca attacattgt ggtacatgtt tggtgataaa tttcatagat aggaagagag
     1081 aagaagaaga acaaatgata aatattttct ttgattgtaa tctccacctt taatatgcca
     1141 caagatgtac acaacatata acaatactaa tgtagtgcct aaggaaatgg catgggatta
     1201 tcaaaaggta attctaaagg tacattatca acataggatg aataattatt gtctatcatg
     1261 atgttgtctt cttcttctaa tcctgttcct gcggtatcat cattgctttc ttgttcctct
     1321 tctttccctt cctcttcttg tttggctgaa ttatcctctt cctcatcctc aatttcttct
     1381 gtctccatcg gctctaattc ctccttgata actttatctt cagattccat atctttcatc
     1441 tccgtagcag cagcagtact tgctgcagca attgttaatg taagtacttc actgaagagt
     1501 attaaaccaa ctatcaatac tcctaccaga ggaagaagaa gatggataac aaacagtttt
     1561 ggctgcaata tggtgtattt ctttgtgttt gttactcgta tatttgaatt aaagattata
     1621 ataacttaca tttattccag gagatagtac aaaagagaga tatagggaaa tcgagagtag
     1681 aacaaaataa aagtttgggc atatccttga caaagaatgc tattccatga agttaaatta
     1741 cttacagata aaatcttatt cattctgtcg tatatatata aagttgtttt aaacatcagg
     1801 atatgttttc tcttgccaac aataaagaca gtagtcacca cttgtttgaa atatctctgc
     1861 tactctatgt ctacaatcat tgcatagtgg agctgtattt gaatcagcca tagtttatat
     1921 gaacacgaca acatctagag tttatcattt taagtttgac aagctatgct tatgataaat
     1981 cataactact actaataaag atattataat ctatattgta aatatttgat gaaatgaatc
     2041 agaaacaaca attaattact gatacgcctc ttgaatcaag actgaagatg agcgaatgtg
     2101 agtcatttgg tgatcaaaca tgtgattgtg gctattgctg tgttgatgga taattagtac
     2161 atatacacac acagacacag aaagcatgca attgtcagat ttgctttaga cggactttta
     2221 tctatcaagt actgaaggtt ttggtagtag ctttattctt gctctttgag tccaaggttg
     2281 attaattcag ccttgtttac aactgctact gtagatataa actgtcttac tctgtatcta
     2341 aatactctgt ataacagctc aacacagtat ttctacaatt actaatgtcc ttatgatata
     2401 atctatctca tttagatatc attagttgct attcctcatc aatagttaca atgttttact
     2461 tcctttccct caaactgttc tgaataacat tctccttgtc gtatacattg tgttcttccg
     2521 tttatacttg caggaagttg atcagatgca cagccatcag ctgatgatga taaagaagat
     2581 ggatttcttt cgtcctgctg tgcatatgct gcttgaggta tcatcgccat tgctactgtc
     2641 gatatccaca taacaatagc aatggctgct gccgtcatta ctattatagt ctgttgtggg
     2701 attttttcca tatgaataat tgatgcacca tatacgaaag cttttgtcaa ctatgttata
     2761 gcatattttc ctaagatata gtaacatgct gctttaaagg gcctgcgctg caaaacaatg
     2821 agcttacaaa tataatccca tgtctctgct tacaactcct acagaaagaa atgtcgatat
     2881 tctaactgat agaataatct tgtttacctc gcatactgac tatagtgaaa gcagtgaagg
     2941 ctgtgaaggc tttatagaag ataggaattg tatatcacta gattatttga aatattttcg
     3001 atattgaggt agaaactaat gtttttcctg ctataattag agaattattt tcattttcta
     3061 tgaggtactc ttattgagaa gtaaaagcgt tcttttcaaa accgtctcta ctttcactgc
     3121 cttcacttca atattataca tcctcgactc aattcttttc tcttcttttc tttctatact
     3181 ga
//
LOCUS       DATAAS010000282         2658 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1473581, whole genome shotgun sequence.
ACCESSION   DATAAS010000282 DATAAS010000000
VERSION     DATAAS010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2658
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1473581"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1238)
                     /locus_tag="VHF08_04620"
     CDS             complement(<1..1238)
                     /locus_tag="VHF08_04620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067962.1"
                     /translation="MYPYGLTQNPYPSSPTPTLIDAQVLGGRRHKEAKNAVVSCIDDL
                     YYKVSGIATNKDFRLITLIQDVGSGKTHLALHIRGLQKIYNNAVISYVDLSQVFPRDI
                     YSLYGAMLRGLDKEYIDSLRKAIVYYLKDKAEQNNRQAKKFFNYGLVDFIRRKSLSNK
                     AEEILDGTIVPDYSAMNQLLKGEFSAAEIYVMKLIIRGKFSDDAYNIKNMENIITNIS
                     AITNLNLKFLKKLTVLQIDEFDSDKKSLDFVKAVINAHLPSTVLMLILTPSSYEAIRK
                     EDSSIFDRLEKANYKIDLAGSNTLEEILDIILEYVRHYDVQRCFKVQDENELSAKIKV
                     IYDEFPDFRNVRSMTNILYHATENAAKRNAQIIDEKAIDDTIKSTHPGLRIRGSIMGV
                     PLSDFIKIRSSSNDIQMLES"
     gene            complement(1238..1879)
                     /locus_tag="VHF08_04625"
     CDS             complement(1238..1879)
                     /locus_tag="VHF08_04625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067963.1"
                     /translation="MSPEQIIAERISSMGTAGIKKIDLRKEFQDMEIDVLIERLVTSG
                     DISVDKKGTAYYCWHKDYYIQNLLNTDPKFRFMYEAIKHLELSVNRTSDGLAKTLETL
                     DNNFKNSDKLNTTKNLDNISRIRINNESTMQLDTFKNEFDLAIENHSSSIGWVELSKV
                     RNELCKKHNISNEVFYNFVEQLTNLYYDKYELSTGGYEGLTVRGLLHGFVRCI"
     gene            complement(2203..>2658)
                     /locus_tag="VHF08_04630"
     CDS             complement(2203..>2658)
                     /locus_tag="VHF08_04630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyl transferase"
                     /protein_id="HEX2067964.1"
                     /translation="AAVAYYGYESTIYPLDKAVGYLSRAESAQSPEAVADYINPVKNL
                     LPNDGNPVWAFPNPRTDFGLIQKELDAMLLRAKSISSLELHSAAYNTGLADLHNSIKV
                     IESNLIEATPYLYVSFTNIVLSAIWIAIILFIFALMKRGREKLKEYENT"
BASE COUNT          813 a          475 c          405 g          965 t
ORIGIN      
        1 tctgattcca gcatttgaat atcattagaa ctgcttctga tttttataaa atctgaaagt
       61 ggaacgccca ttatacttcc tctaattctt agccctgggt gagtgctttt gattgtatca
      121 tctatggctt tttcgtcaat aatttgtgca tttctttttg cagcattttc tgttgcgtga
      181 tataatatat tagtcattga tcttacgttt ctaaaatcgg ggaattcatc ataaattact
      241 tttatcttgg ctgacagttc attttcatct tgtactttaa aacatctttg aacatcgtaa
      301 tgtctcacat attcaagtat gatatcaagt atttcttcta atgtgtttga gcctgctaga
      361 tcgattttgt aatttgcttt ttctaaccta tcaaaaatag aactatcttc ttttcgtatc
      421 gcttcatatg atgaaggtgt cagaattaac attaatacag tcgaaggtaa gtgtgcatta
      481 atcactgcct tgacaaaatc taatgatttt ttatcagagt caaattcatc aatttgaaga
      541 acagtcaatt tctttaaaaa ttttagattt agattagtta ttgctgatat gttggtaata
      601 atattttcca tattcttaat attataagca tcatcactaa attttcctct gattattaac
      661 ttcatgacat atatctcagc tgccgagaat tctcctttta gcagctgatt cattgcagaa
      721 tagtctggaa ctattgtccc atccaaaatc tcttctgcct tattagagag actttttctt
      781 ctgataaaat ccacgagccc ataattgaaa aatttctttg cttgcctatt attctgttct
      841 gccttatctt taagataata aacaatcgct tttcttaggc tgtcgatata ttctttatca
      901 agacccctta gcattgctcc ataaagacta tagatgtccc gtggaaaaac ttgagataag
      961 tcaacatatg atatcacagc attattatat atcttttgca atcctctaat gtgcaaagcc
     1021 aagtgcgtct ttccggatcc aacatcttgg atgagagtaa ttaaacgaaa atccttgttg
     1081 gttgcaatgc cactaacttt ataatacaaa tcatcaatac atgatacaac agcattcttt
     1141 gcttccttat gtcttcttcc tcctaaaacc tgagcatcga ttagtgtagg tgtggggcta
     1201 ctaggatatg gattttgtgt taaaccataa ggatacacta tatacacctc acaaatccat
     1261 gaagcagacc tctaacagtc agtccctcat aaccacctgt agataattcg tatttatcat
     1321 agtacaaatt cgttaattgc tcaacaaaat tatagaaaac ttcatttgat atattatgtt
     1381 ttttacataa ctcatttctt acttttgata gttctaccca gccaattgaa ctagaatgat
     1441 tttcaatagc cagatcaaat tcgtttttaa atgtgtctaa ttgcattgtt gattcattat
     1501 taatacgtat tcgcgaaata ttgtcgagat tttttgtcgt attcaattta tcagaattct
     1561 taaaattatt atcaagtgtt tctaaggttt tcgctagacc gtcagacgtt ctattaacgg
     1621 acagctccag atgcttaatt gcctcataca taaatcggaa ttttggatct gtatttaata
     1681 gattctgaat ataataatct ttatgccaac agtaatatgc tgtacctttc ttatcgacag
     1741 agatatcacc agatgtcacg agacgttcta tcagaacatc aatttccata tcttggaatt
     1801 ctttgcgtag gtctattttt tttatccctg ctgtccccat agaagatata cgctcggcga
     1861 ttatttgctc aggtgacatg tgataaaaat ttgaaaatca ttatataagt ctaaacgtaa
     1921 tacctttcca catattttgt aaaagtagtt gaacctccga aagaatgatt aagtatctaa
     1981 tctacattga tatgggatga tgattactct ttctgaatca tgatgaaagt actagggtaa
     2041 ctgaccaaat cgtttctatg ccatatatat acatatggca ttcttagaaa tatagaaaag
     2101 aataacaaca atggtaatca tataattatt acatgcattc accaactatg gtccgtggtc
     2161 agagtgctat acggtctgaa tttttaaaag atatgtgatt gtttaagtgt tttcatattc
     2221 tttcaatttt tctcttcctc gcttcatcag agcaaaaata aaaagaataa ttgcaatcca
     2281 gattgcactt agaactatat tagtgaaact aacgtaaaga taaggagtcg cttctatcaa
     2341 gttagattct attactttaa tagaattatg tagatctgct aatccagtat tataagcagc
     2401 gctatgtaac tccaatgatg aaatggattt ggcacgtaaa agcattgcat caagctcctt
     2461 ttgaatcaag ccaaaatctg ttcgtggatt tggaaatgcc catactggat ttccgtcatt
     2521 gggaagcaaa ttttttactg ggttgatgta atctgctacc gcttctggtg attgagcaga
     2581 ttctgctctt gataaataac ctactgcttt gtccaaggga taaattgtgc tctcatatcc
     2641 ataataggct actgctgc
//
LOCUS       DATAAS010000283         2166 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2464368, whole genome shotgun sequence.
ACCESSION   DATAAS010000283 DATAAS010000000
VERSION     DATAAS010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2166
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2464368"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            333..1706
                     /locus_tag="VHF08_04635"
     CDS             333..1706
                     /locus_tag="VHF08_04635"
                     /inference="COORDINATES: protein motif:HMM:NF025017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX2067965.1"
                     /translation="MLLENVVMIILASFWFSTIPVAFLTLGRFLKNRNTFVEQDLRRI
                     YNDPTIIFQITTRSATMTPVVKRGIDSIIDSSLKINYRNYQISIITDDPKDKDTLNDI
                     NCEVIIVDKKFKSSAIKKGRALQYAVEHRRKTGKNISNYWIFHMDDESYVTSQTILSL
                     LKFIRKGNAIASEGPIFYPLKFESANRLTAIAESIRPFTCYDCVSQMTNPPPLHMHGS
                     NLLVRSDIEDSIGWNFGPTLAEDQIFGYKIYEKYGPKSMGWHGGMLLEQPPLNIKDHF
                     MQRRRWVLGSLQNMVRFPLIHKFKLMFKLVTYFMGFVSGVVSTILYLYAYIPKLLLVL
                     SISINEFNLDIISWFDIVMKTFSSEATINASINGSPLDPIIGLILLFPYIMWLFSYQL
                     GLFLNLRYSKISLIKRVALHLQTLLLSVVIGLLETFPAFYAMLEYYIRDRTNKMKKIY
                     DFYVIKK"
BASE COUNT          735 a          331 c          364 g          736 t
ORIGIN      
        1 cttataagaa aaaatagttt ctttcttttc ttcaacgaat aaataaaagg gatagcagac
       61 ctattgacgt gataaataat atttactcat gtccgatgtt aatcttatgg catcttggat
      121 tttattctgt ataaatgaag aattttgatc tttcgtctaa ttttagacca ttatttatag
      181 tatctttctg acaaggagtg caatcatata ttcatattcg gcactgtttg tttctgcgta
      241 atttgtttta tgactagtga attaatttgt tattgagttt aagctgagct ttaaaaagga
      301 atcttttata aaacaagaga ttcgccagta aggtgttgtt agagaatgtt gtgatgatca
      361 tattagcctc tttctggttc tccactatac ctgttgcctt tctgacgcta ggaagattcc
      421 taaagaatag aaatactttt gttgaacagg atcttcgacg gatttataat gatccaacga
      481 taatttttca gataaccact cgttctgcga caatgacacc agttgtaaaa aggggaattg
      541 attcaatcat agattcttct ttaaaaatta actataggaa ctatcaaatc tctatcatta
      601 cggatgatcc gaaggataaa gatacattaa atgatatcaa ttgtgaagtc attatagttg
      661 ataaaaaatt taaatcgtct gcaatcaaaa aaggacgtgc cctacaatat gctgtggaac
      721 atcgtcgcaa aactggtaaa aatatctcca attactggat attccatatg gatgatgaaa
      781 gctatgtaac aagtcaaaca attttgtctt tgctaaaatt cattaggaaa gggaatgcaa
      841 ttgcgtcaga gggtccaatt ttttatccat taaagtttga gtctgcaaat cgattaacag
      901 ctattgcaga atctataagg ccttttacat gctatgattg tgtttctcaa atgacaaatc
      961 ctcctccatt gcacatgcat ggtagcaatc tattagtcag atcagacatt gaagattcta
     1021 taggttggaa tttcggacca actcttgcag aggatcaaat ttttggctat aaaatttatg
     1081 agaagtatgg accaaagtct atgggctggc atgggggaat gttgcttgaa caacctcctc
     1141 tcaacatcaa agaccatttt atgcagcgtc gcagatgggt tcttggaagt ttgcaaaata
     1201 tggttagatt tccgctcata cataaattta aacttatgtt taaattagta acatatttta
     1261 tgggatttgt ttcaggcgtc gtttctacta ttctttatct ctatgcctat attccaaaac
     1321 tcttgttagt attatcgata tcaattaatg aatttaattt agatataata tcatggtttg
     1381 atatagtgat gaaaacattt tcttctgaag caacgattaa tgcatcgatc aacggtagtc
     1441 ctcttgatcc tatcattggc ttaatcttac tatttcccta cattatgtgg ctattttcat
     1501 accagttagg gttattcctt aatctaagat attcaaagat cagtttgatt aagagagttg
     1561 cattgcattt acaaacgcta ttgttgtctg ttgtcatcgg gctccttgaa acatttcctg
     1621 cattctatgc gatgcttgag tattatattc gggatagaac caataaaatg aaaaaaatct
     1681 atgacttcta tgttataaaa aaataatgtc atgaacacat tctgttataa aatatttttg
     1741 tgagcaaacg caactattta ggattgcact taaggtagag aaaagaagag agatagaaaa
     1801 tatctgcaat gaaacgacaa atgctcgagt ctattgtaac aggaattaag agcatcaata
     1861 aggaaataac aaaaagagaa agctaaagaa aatatgaaaa atgttttgac tactggtaaa
     1921 ttagttttga aatttgctac tttctcagta attgaatcag taagaaaaaa cgctaaataa
     1981 tataatttcg taatatgtga tatttcaact actaaaatac tattactata tcttacgaat
     2041 ctaactctct ttcgttaatg ccaggacgac agcaatatca acaatcattt aatgatagcc
     2101 atactgcttt gatacttgaa gaggctgaaa agctttacaa tgatttaaca acaaaattga
     2161 tagata
//
LOCUS       DATAAS010000284         1817 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1476151, whole genome shotgun sequence.
ACCESSION   DATAAS010000284 DATAAS010000000
VERSION     DATAAS010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1817)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1817)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1817
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1476151"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(292..663)
                     /locus_tag="VHF08_04640"
     CDS             complement(292..663)
                     /locus_tag="VHF08_04640"
                     /inference="COORDINATES: protein motif:HMM:NF042555.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6659 family protein"
                     /protein_id="HEX2067966.1"
                     /translation="MSMDFAKLCEEVFALHDDIRYAGIIDDTGTLIAGGLRKGLDSMT
                     EQDNDELYLAQTAIRKSMRQRFDNTMGKARFAYVEREKISMLTFYMDKNILVVSIEPN
                     VDPHTVMDIAIDTLELLNGRV"
     gene            complement(858..1166)
                     /locus_tag="VHF08_04645"
     CDS             complement(858..1166)
                     /locus_tag="VHF08_04645"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008124 -
                     4-alpha-hydroxytetrahydrobiopterin dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006729 - tetrahydrobiopterin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HEX2067967.1"
                     /translation="MSEDEYKKLSDEEIKRELNKNPDWIVENGKLNRTLEFDNFVQAF
                     GFMTEVAIEAEKINHHPEWFNVYNRIKIDLVTHDLKGISNYDFKLATIINTLYNRIRH
                     "
BASE COUNT          584 a          327 c          270 g          636 t
ORIGIN      
        1 ctcatatgga caataactat ctagcaatga tctaattcag tgtacatgac catctaattt
       61 caaggataag gtacaatctg gaaataatat gaatggcaag tccccacagt aatcaagaac
      121 ataaaagaga tcttgtttta tctgttataa tgactagtat agtccccaac tcctaagaag
      181 agcaatcgct atactgttat tgaaggatct taattgctgc aaacaagtac tttgaaattc
      241 atcaactctt tataagaaga ttgctcatac agttgttata attaaaagaa tttagactct
      301 tccattcaat agttcaagtg tatctattgc tatatccatg actgtatggg gatcaacgtt
      361 tggttctatc gatacaacta gtatattttt atccatatag aatgtcaaca tcgaaatctt
      421 ttcacgttct acatatgcaa atcgtgcttt tcccattgta ttatcaaatc tctgtctcat
      481 tgattttcga atagccgtct gtgccagata caattcatca ttatcctgtt ctgtcatgga
      541 atcaagacct ttacgcaagc ctccagcaat taacgtaccg gtgtcatcta tgataccagc
      601 ataacggata tcatcatgta atgcgaagac ctcttcgcat agctttgcaa aatccatact
      661 catgtaagaa aattttaaca tataaaggaa tagctttttt tgtcttattg catctgagca
      721 tatctttgag tcagcatcat agttcaagta tttgcaataa tatatctgca atccttataa
      781 catatttttg cgattgcttt agttaagaag tctaggagaa tagaagcttt tgttattcta
      841 tggaactatt tatagattta atgacgtatt ctattataga gtgtattgat tatggttgct
      901 aatttaaaat cataattact tattcccttc agatcgtgtg ttaccaagtc aatttttata
      961 cgattataaa cgttgaacca ttctggatga tgattaattt tttcagcctc aatagctact
     1021 tctgtcataa aaccaaatgc ctgaacaaag ttatcaaatt ctagtgtcct gttcaatttg
     1081 ccattttcga ctatccaatc aggattttta ttaagctccc ttttgatttc ctcgtcagat
     1141 aacttcttgt attcatcttc agacatgttc tattcatacg ctctctcata taaaaggcgg
     1201 atgattaatg tcccccacct ctctcttttg gtttacaata tatcaaatag aggaagtttc
     1261 tgatgacgat ctcctataag cattacttag ttgagagatt caaatttttt attaataaaa
     1321 taattcatag gtagaatttc tgattaatta ctaataatca atctactgtc ctcctctgaa
     1381 caaagtgcga gacattattc ttaaggcatc ttgtcggata tgacataatt atggatcaat
     1441 gggtcacgac taatagatga catccatctc atttacaaac aaaatgttgc gatggtgcat
     1501 agccctgtag taaagacgtg agtcatgacc ggatgccact atccatggtt tttgcaaatg
     1561 tcatacatat actagtatca atgtccatta gttatcttaa aatacctctg ctcttaactt
     1621 tgtgttttac tacactgcta ttaccattaa catacagata gaatccaatt tagaagaaac
     1681 aatacaacaa caataattat tacaacagat agttcgaatt ttaattttgc agcgtggatt
     1741 taagggtata ttctaacgaa tattaatcgc aagtggtata aataaaattg aatgatgggt
     1801 tcattcagtc tcatcta
//
LOCUS       DATAAS010000285         5460 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3537263, whole genome shotgun sequence.
ACCESSION   DATAAS010000285 DATAAS010000000
VERSION     DATAAS010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5460)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5460)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5460
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3537263"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(140..1540)
                     /locus_tag="VHF08_04650"
     CDS             complement(140..1540)
                     /locus_tag="VHF08_04650"
                     /inference="COORDINATES: protein motif:HMM:NF017206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEX2067968.1"
                     /translation="MQNQNISNQTVVRNSKGKTFKILVTGASGFIGSRLVYRLSLSSF
                     SKDNQEIICMTRNVESLERRFNRDVKIVNADVTNYQQVVRAMSEVDVAFYLIHSMEGS
                     SKEWKKFAERDRLAAENFATAATECGVKRIIYLGGLSHGKDNELSEHLRSRKQVGEIL
                     KTSDAKVTIFQAAVILGQGGGSFQMLQYLVERLPAMVCPKWVLTKSQPISVDDVVTYL
                     VKAIDVKETEGRTFEIGGPDVLTYVDMMRHYAKMLNKSIKIIIIPFLTPRLSSYWIDL
                     ITPVKASLARPLIDSLKHEATVKDDSIKKIIPIQLKNFEEAIKSAKEEQMERERIARR
                     EHTSHSFNNRILLISLFAMVAISSTYYILDARPEIFQANWLILSGFWYFGIAFSIYFV
                     IKGARLGAMVAGIIGWITLAFWLTDNIYTVLGNSLIASSPDIIMTIRNFIGAIIAAVV
                     VVASHNVFHKIRVHGL"
     gene            complement(1569..1895)
                     /locus_tag="VHF08_04655"
     CDS             complement(1569..1895)
                     /locus_tag="VHF08_04655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067969.1"
                     /translation="MTRSIIFNLHLDLGESYVYGQAVVGDKSYRINIQVGNQSIIFPS
                     DFEIDTDQALIYFDMGEKDKIVLNSNVTKGNRDMIELYVNDETMQNLANVLPVSMTMV
                     MDRTSN"
     gene            complement(2089..2280)
                     /locus_tag="VHF08_04660"
     CDS             complement(2089..2280)
                     /locus_tag="VHF08_04660"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067970.1"
                     /translation="MQKENPEQISTQFATIESIDDYIDKAQQLDAKVIKNKQEISKGY
                     YTVLGDPKIHLENGKINTE"
     gene            complement(2624..2755)
                     /locus_tag="VHF08_04665"
     CDS             complement(2624..2755)
                     /locus_tag="VHF08_04665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067971.1"
                     /translation="MAATFIVKGRKGGIDTSNDSYGTIQMPLVKRTSITLIVKHIDY"
     gene            complement(2941..3111)
                     /locus_tag="VHF08_04670"
     CDS             complement(2941..3111)
                     /locus_tag="VHF08_04670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067972.1"
                     /translation="MVIGTAGVTLAGALNGTAIMGIASVIMGGSAMMTALLVRQEIEK
                     KRLNPKLAVELR"
     gene            complement(4387..4773)
                     /locus_tag="VHF08_04675"
     CDS             complement(4387..4773)
                     /locus_tag="VHF08_04675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067973.1"
                     /translation="MFFDKLSEILYNEIPETTSAYSKVMINIDQFNIGQSYVTAKVQN
                     RYGNIININIEGGRNGIELQDELFNIKGKSLSVAYLITKIKDENNILVRKLPIIGQKD
                     WLLIYDDTFFLMAVKDAYDEIEILAI"
     gene            5097..>5460
                     /locus_tag="VHF08_04680"
     CDS             5097..>5460
                     /locus_tag="VHF08_04680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEX2067974.1"
                     /translation="MNHVTVAKFGGSALGIDGILIPKIIDRIKQMKEESKVVAVFSAP
                     LINYEEKVISMTDVAIKVGRNYASSNPIEIEVLREVYERIANEHVTKKFHNEFFQHLD
                     KFYHQVIVSLKQATENKRF"
BASE COUNT         1752 a          941 c          761 g         2006 t
ORIGIN      
        1 tattgtattg ctcattagca ggatttattt cagcttgggc aatacaatat aaataattta
       61 gagatttttt gcgattccat aaattgcatt gatggtagta ctataaaaac aagtgactaa
      121 gatttttaat agtgcctaac tataggccat gaactcttat tttatgaaat acgttatggg
      181 atgctactac aactactgcc gcaattatgg caccaataaa gtttcttata gtcataatta
      241 tgtcaggaga gctagcaatt aacgaattgc ctaaaacagt gtatatgttg tcagttaacc
      301 aaaaggcaag agtaatccaa ccaattatac ctgcaaccat agcaccaagc cttgctcctt
      361 taattacaaa atatattgag aaagctattc caaagtacca gaaaccactt agaatcaacc
      421 aattagcttg aaatatttcg ggcctggcgt cgagtatata gtaagtagaa cttatagcaa
      481 ccattgcaaa tagcgatatt aacagaattc tattattgaa agagtgagaa gtgtgctctc
      541 ttcttgcaat cctttctctt tccatttgtt cttcctttgc agattttatt gcttcttcaa
      601 aattttttag ctgaatagga ataatttttt ttattgaatc atcttttact gttgcctcat
      661 gtttgaggct atctatcaaa ggtcttgcca atgatgcctt aacaggagta ataagatcaa
      721 tccaatagga agaaagtcgt ggagtgagga aaggaattat gattattttt atcgacttgt
      781 ttagcatctt tgcataatgt ctcatcatat ctacatatgt aagcacgtct ggtcctccaa
      841 tctcaaatgt tcttccttct gtttctttca catcaatagc tttaactaaa taagtaacca
      901 catcgtctac ggatattggt tgtgatttag tcaggaccca ttttggacac accatcgcag
      961 gaagcctctc aacaaggtat tgtagcattt gaaatgaacc tcctccttgt cctaaaataa
     1021 cagcagcttg gaatatcgtc actttcgcat cggatgtttt taatatttca cctacttgtt
     1081 ttctgctcct taaatgttct gaaagttcat tgtctttccc atgactcagc ccgccaaggt
     1141 agatgattct cttaactcca cattctgtgg ctgctgttgc aaaattttct gcagcaagtc
     1201 tgtctctttc tgcaaatttc ttccattcct tagaagaacc ttccattgaa tgtattagat
     1261 aaaatgcaac gtctacttca gacattgctc ttacaacctg ttggtagtta gtgacatccg
     1321 catttactat tttaacatct cgattaaaac gacgctccaa tgactctaca tttcgtgtca
     1381 tgcatattat ctcctgattg tctttagaga aagacgataa agataatcta tataccaaac
     1441 ggcttccaat aaagccactg gcacctgtga ccaaaatttt gaaagtctta ccttttgaat
     1501 tacgaacaac cgtttggttt gagatatttt gattttgcat tattcaatca ctagtgaaat
     1561 tttttatttt agtttgatgt cctatccatt accattgtca tagatacagg aagaacattt
     1621 gctaaatttt gcatagtttc gtcattgacg tacaactcaa tcatatctct attccctttt
     1681 gtgacgttac tatttaatac aattttgtct ttttctccca tatcaaaata tatcaatgct
     1741 tgatctgtat ctatttcaaa atcgctagga aatattatag attgatttcc gacttgtata
     1801 tttattctat atgatttatc acctacaaca gcttgaccat agacatagct ttcccctaga
     1861 tctaggtgta aattaaatat aatcgatctt gtcaatttat tctgatgttg ctattattct
     1921 tcctatattt aagtaatgcc aacaaatcat tatagtgcca acacatttta cttactatat
     1981 gtttactggt actaaacgaa tataacataa atcaattggc aaaaaataat attaaaaaag
     2041 aaaaataata gaagataatt tattattcat attatttatt tgccattatt attcagtatt
     2101 tattttgcca ttctctaaat gtatttttgg gtctcctaat actgtataat atccttttga
     2161 tatttcttgt ttatttttta ttacttttgc atcgagttgc tgagccttgt ctatataatc
     2221 atcaattgat tctatagttg cgaattgcgt tgatatctgc tcaggatttt ctttttgcat
     2281 tgaagctata atgtatctct gcatttttca tcgccaatat ctatccattt cacctttttc
     2341 aaattaccat ccaaatagag aagaattctt attctctaaa ttatttacat atatctgttg
     2401 tatttgaaat gctatacgtt gttactattt gacattttct tttcagttcc aaaatttcca
     2461 atatataata atgtatacta acttatgtta cgcctattag acttaagtat aaactgccat
     2521 ttatttgacg cttctcttta tacattcaga agattcaaac aaatgattat cgctccatga
     2581 agaaaaaggt ccttagatgg aatatcatga aattgtttat cttctagtag tctatatgct
     2641 tcacaatcaa tgtaatactt gtacgtttaa ctaagggcat ttgaatagtg ccgtaactat
     2701 cattactagt atcaatgcct ccttttcttc ctttaacaat aaaagtcgcc gccatggcag
     2761 atcaagtctt tcaaaaccac cattcctaca ataccaagca aagacttcat tagatgagca
     2821 tcaatgcgat gctactacaa aagaaaatag ttccaatata ttgtcttact tataaaagat
     2881 attaaaatag taaagggttg gtcattgtat ggatgtatat atatgtatgt cttatctgtc
     2941 ttatcttagt tccacagcta atttcggatt taatctcttc ttctctatct cttgtcttac
     3001 taagagtgct gtcatcattg ccgatcctcc catgataaca cttgctattc ccattatggc
     3061 tgtcccgtta agagcacctg cgagagtaac gcctgctgtt cctattacca aagttcatgg
     3121 tattttatct tttatattca tagaacgatt tatacgccca taatatataa actagtggta
     3181 aagtatatga ctagtgctaa caaaaaaaga ataatgggat gctaagaaga atctaactac
     3241 aaacacaaag agcgttgata gagacatttg atcatatcta atagcaattt ggtttacaaa
     3301 attaatttac aagtagtata tgacatatat gacaaatatt atatcaatct tcatttactg
     3361 gattttattc tataatatgg acttcaacgt aaaattaatt aacaattttg atgctaatat
     3421 ttctcttttc atttatgact tctgaactgg cttcagtcta ttcccatttc atgttttttg
     3481 taccttcatt ggctgctata gtcaaccata agtaaccttc tttacttcca tgttaaattg
     3541 gatgtatttg ctttttttag taaactacat ttttataggt gtcaagtatt gtttttcttt
     3601 aacacagtat tactaagacc acattctctg catttgtaaa ttattgtctt ttctaattcg
     3661 ttatctacca acatgtcacc gccacaacaa gcacatttca tataaactat attttatatc
     3721 tagttattca aagcttttcc taatatgcta ttctaacagg ttacccatta agatgtaatt
     3781 agctaagaaa tttgtcttgc acaattatat ctactggcaa atttctatat tcaatacatt
     3841 tggctgcttt attcagagat ctatctttat aaactcattt agggaatggc catattgaac
     3901 ttatgatgtg attacacaat gctatattca tcatatatct tattgaaatt tacattggat
     3961 ttgtgttata aaggatacca ataatgtact accaaaacct tgcatattat tcagttaacc
     4021 tttataaaaa attgatagtg tttcaacagt tggttattta tcttcaagat tatttcaata
     4081 cttgtaaatc ctttctttta gataaccctt agaatattca atgatttcta aatttcacat
     4141 ttggccatat ttggaacaat tcgaaatcta ttttaatcaa tgtaaaggtc gagaatagtt
     4201 tttgcatcct tatcaacaaa tcctattcaa gatccaaaga atattgtatg ttggcatcca
     4261 ttacttattc atattattat tatcaaaaat ggagagtact aaaaatatat agaacttgat
     4321 gatttaatag aatagagtat tgttagttaa tatgttttta tttttaatat agacctttca
     4381 actttgtcat atagcaagaa tttcaatttc atcataagca tcttttactg ccataaggaa
     4441 aaaagtatca tcgtaaatta aaagccagtc tttctgtcct attataggta gttttctgac
     4501 caagatatta ttttcatctt taatctttgt tattagatat gcaacgctta ggcttttccc
     4561 ttttatattg aaaagctcat cttgtagttc aataccattc cgtcctcctt caatattgat
     4621 gttaattata ttcccatatc tattttgcac ctttgctgta acataactct ggccaatatt
     4681 aaattggtca atgtttatca taactttgga ataagcagat gttgtttcag gtatttcatt
     4741 atatagaatt tctgataatt tatcaaaaaa caacaaccag tatcaaacaa tattctaaaa
     4801 atcaaaatat aatattaact ccaacagttc ttcttagcgt gcatatttga catgtatgca
     4861 actcttgaca tgttaatatt tgacatgcat tttaataaag cctttaatat tagataagtt
     4921 gagatacaaa tatgaagaat tttaaaataa gatgttttta ctgacaagaa actttatgaa
     4981 tatgagtaat tatctatgtt atgtagtcgc acagaaaaag gccgccaagg caattcaaaa
     5041 tatttaatat ttaatatata ggtatagaga gtagcatcca aagcgagatt aatcaattga
     5101 atcatgttac agtagctaaa tttggcggta gtgccctcgg aatagatggt atcctaattc
     5161 cgaaaattat cgatcgaata aaacaaatga aagaggaatc taaggtcgtt gctgttttct
     5221 ctgcccctct tatcaattat gaagaaaaag tgatttccat gaccgatgtt gcaataaagg
     5281 tgggaaggaa ctatgcatca tccaatccaa tagagattga agttttacga gaagtttatg
     5341 aacgaattgc taacgagcat gttaccaaaa agtttcataa tgaattcttt cagcatcttg
     5401 ataaattcta ccatcaggta atagtttcat taaaacaggc aactgagaat aagcgttttg
//
LOCUS       DATAAS010000286         2233 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4080897, whole genome shotgun sequence.
ACCESSION   DATAAS010000286 DATAAS010000000
VERSION     DATAAS010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2233)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2233)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2233
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4080897"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(633..791)
                     /locus_tag="VHF08_04685"
     CDS             complement(633..791)
                     /locus_tag="VHF08_04685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067975.1"
                     /translation="MSTIIEVQHREDNIEEFARNDTHASYPLTDKAYYVEEIHYKFKD
                     SICINVED"
     gene            complement(949..1935)
                     /locus_tag="VHF08_04690"
     CDS             complement(949..1935)
                     /locus_tag="VHF08_04690"
                     /EC_number="4.4.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphosulfolactate synthase"
                     /protein_id="HEX2067976.1"
                     /translation="MLDDLAKNRIDKKKPRKEGLTFIVDKMQGLDRENLEILAPLIDM
                     VKIYGAYPLLMSESQLERKIKFYHDFNILVSTGSTITEYAIMESSFDKFVKESAKVGF
                     DIIEIGENNIDLKIEQKKKIVDTILSFNLDFHWKIGKKDPHHQIGIDKTLSKVEEALN
                     TGANKVILEANEGINVGIYDERGLIKWNFVAALTSKYPPNTFIFEAPLETQQSALIAE
                     FGPRVNLAEIHHDVVASVESQRRGFLSKASFGVSILHKEPEGGPASKFIYYIIKTKHP
                     IEQAELVRLSRLPRRTVQSAIDELKEQGLISEKNSLDDARRRIYYPIQSDWI"
BASE COUNT          702 a          370 c          340 g          821 t
ORIGIN      
        1 aaaagaaaat ttgaatgtaa atgaggtaaa cacaatgata ttagaatcac taaaaggaca
       61 agaagaagaa aatgcagtag aagaattaga acaagaaggt aaattaaaga agaattcaca
      121 aaaaggtgga caagaatacg aagatgagga acctagacag ggctaggaaa actaacaatt
      181 tctgaattaa atgaaataac ataagatgta tcttttctat tttattttga ttttattact
      241 ttctttattt atgttgttac taataattag taacaacatc gcacctactg acgcgtcttc
      301 taatactaag actctataat aatacccatt gcaacgattc aatccctgtc attgctctgt
      361 ctgttatatc tgccctgttc tgggtcttgt acatttcttg tttcttctgt atgttctatt
      421 atacagcatg tcttctagtg ttattaataa tggtatcggt agttgtaatg gaggtacaaa
      481 tttttctttt tgcatcccat acaaaacact aaacaaagat tatttgcttg tataaactgt
      541 aataccaata acgttccaaa ttggctgttg tttgttggaa tgcaaggtat tgcttgtgct
      601 aaaatgccat ttggattaag tgctatttgt ttttaatcct ctacgttaat acatatactg
      661 tctttaaatt tataatgaat ctcctctaca tagtatgctt tatctgtcaa tggatacgat
      721 gcatgtgtgt catttcttgc aaattcttct atattatctt ctctatgctg tacttctatt
      781 attgtactca ttaatcttat tataagaata tactatatgt atgttatgct attagataaa
      841 ctacaggact aggactttag aatataaata ttattgtatc tgttagagtt gttctaatat
      901 acctatcata cttcaaggca ttacgtgtgt gatggcttgt tatattaatt aaatccagtc
      961 tgattgaata ggataataaa ttcttctcct agcatcgtca aggctatttt tttctgatat
     1021 caatccttgt tctttaagtt catctatagc actttgaaca gttcgtctag gcagacgact
     1081 taatcgcacc aactctgctt gttctatagg atgctttgtc tttattatat aataaatgaa
     1141 ttttgaagca ggtcctcctt ctggttcctt atgaaggatc gatacgccaa aggaggcttt
     1201 ggataaaaat cctcttcgct gggattcaac agacgctaca acatcatgat gaatttcagc
     1261 taaattcacc cttggaccaa attctgctat taaagcagat tgttgagtct ccaaaggagc
     1321 ttcaaaaata aatgtatttg gtggatattt tgaagtaagt gccgctacaa aattccattt
     1381 tattaaccct ctttcatcgt aaataccgac attgatgcct tcattggctt caagtattac
     1441 cttgtttgca cctgtgttta gtgcttcttc aacctttgat agtgttttat ctattccaat
     1501 ctgatgatga ggatcttttt tgcctatctt ccaatgaaaa tcaagattaa aggataatat
     1561 agtatcaaca atctttttct tttgttctat cttcagatca atattatttt cgccaatttc
     1621 tattatgtca aacccaactt tagcagattc tttaacaaat ttgtcaaaag agctttccat
     1681 aatagcgtat tctgtaatgg tacttcctgt agatactaaa atattaaaat catggtaaaa
     1741 ttttattttt ctctctagct gggattcaga cattaataat ggatatgcac cataaatctt
     1801 taccatgtct attaggggcg ctaatatttc gagattttct ctgtctagcc cttgcatctt
     1861 atctactata aaggttaaac cttctttgcg aggtttcttt ttatctattc tatttttggc
     1921 taggtcatca agcaattgat atataatacg tgttaaaacg acatatattg aacttgcgtt
     1981 ataagcaaaa tatgctaaat ataaataatt catgttaggt tttgcacata ttgttctcag
     2041 tctgcgtatt tgaaagcagt aatatatact atttttaaat taaattgtcg tcatatgctt
     2101 agaaaaaaaa tatctgctac aactgctgcc acaattattc ttgttgcaac aattgttaat
     2161 gttatacata ctccttcagc attttcccaa actatagaca caggtaatag cgaaggagaa
     2221 ggcaatacag caa
//
LOCUS       DATAAS010000287         2644 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3537680, whole genome shotgun sequence.
ACCESSION   DATAAS010000287 DATAAS010000000
VERSION     DATAAS010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2644
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3537680"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(365..547)
                     /locus_tag="VHF08_04695"
     CDS             complement(365..547)
                     /locus_tag="VHF08_04695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067977.1"
                     /translation="MIHKQTQKQGNIKIIKKRVEKFQMKNRIDAISTNDFVQALTIAY
                     DKYLDWINEDNAILKR"
     gene            complement(1422..1673)
                     /locus_tag="VHF08_04700"
     CDS             complement(1422..1673)
                     /locus_tag="VHF08_04700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067978.1"
                     /translation="MAKSTTKDETTKLENSTYNILIALGKEAQFLYSTIDTYISDAQK
                     DNNSELVNTWNTIKEDRKRHMDMLRSALERAAKEQKLSH"
     gene            2224..2547
                     /locus_tag="VHF08_04705"
     CDS             2224..2547
                     /locus_tag="VHF08_04705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067979.1"
                     /translation="MAFSIMLIAVGPLGSASAQQSTPFDAVANTTGGAGGNATGGGAG
                     GNATGGANAAEPGIGTASELENLTQGGPEALTNNTEVTDPATGLADLQKEQTSTDPNM
                     TTPSG"
BASE COUNT          931 a          403 c          403 g          907 t
ORIGIN      
        1 cgatcgatgt ccaaggttta gttgaagaag aaatatttga gtgtttcatt catctgtgct
       61 ggttttaaag ataatctgat atttgttttg aggaagtgcc aattgcatta acaaatatac
      121 ttaccattta tagaagagat taaaaacgtt aacaaaataa tcaaagccct tttcctgctg
      181 aaagagtgta cagaaactct ataggtagag caactaaaca gcaataatga tgcaagaata
      241 actattacaa taatagttgt caaatcatca tataacatag tttatttgta aatgtgaatg
      301 gtaatttatc gtcaatgtct gctttggcat ttgaatatat tagtaaccaa atacatgacc
      361 tagattacct ttttaatatt gcattgtctt cattaatcca atcaaggtat ttatcataag
      421 caattgttag ggcttgaaca aaatcatttg ttgaaatcgc atcaattcga tttttcattt
      481 ggaatttttc aactcttttt tttattatct ttatgtttcc ttgcttttgt gtctgcttat
      541 gaatcatata tagaattaat gtaatcaatt aagtaaaagg accgatgttt agattagcta
      601 acctaagacc tagtccataa tcattaaaga tcaaatagaa aagtcggctg atgagttata
      661 ggataaaaat gatcacaata ttatcagaaa ggtatatttt tgatgattga aacgttaatt
      721 tcaatagagt ataaaagaat cgccagaatg aagaatttga agtacctatg aatacgtgta
      781 ttcattaacg gcgcttatga taataaattt ttattttaat ttttatcaat ttcacttctt
      841 atctataaga ttagtgagaa ttttgcataa cacactctgc tttatctaat gatagtaaaa
      901 atataataat atatgatctt cctaaataga gattcgatta ttataacatt gtaaaagcaa
      961 gaaaacatcg atgcttattg tatcagtcaa ataattagaa ttattaaatt agtaatacga
     1021 aattaaaaat attaatgtta ccagcaaata gtatcgagta tatcattaat tctatcttat
     1081 tttctccata tttttataat gagatcagaa gaatgtttta gattaaatca aaggcaaaca
     1141 cgatctttcc tttgcagttg attcatcaca tagatagaaa acatattatt aatgatagta
     1201 acaacaacaa atgcatcttg acatgttgtc ataaagtgaa ctatattttt agatcacttg
     1261 aatccttttt gtcttattta atgtttgtga tatctatcag caggatgata attaccaatc
     1321 acaaccatgt ccttcacaaa tgaatcaaaa caaaaagaat ggaatatgta gccgcattta
     1381 tgtatgcagc gcatgcgact aatctattat tatctaaatt actaatgact caacttttgt
     1441 tcttttgctg ctctttctag agcactcctt agcatatcca tatgtctttt tctatcttct
     1501 tttatagtat tccacgtatt taccaattca gaattgttgt ctttctgagc atcacttatg
     1561 taggtgtcaa tagttgaata cagaaattgg gcttccttcc caagggctat aaggatatta
     1621 taggtagagt tttctaactt agttgtttca tcctttgttg ttgattttgc catgtagttt
     1681 acagtacaca aagattaaaa agagttacat gcttgaccag tctataatag cttttagaaa
     1741 aataacaaat agcaataagg cctgaataaa ataaccacca tacaactaga caaaacgaca
     1801 gtctatcgat cttgaatttt aactattaaa attaagattc tcagatctag cctagcagca
     1861 ttgtctaata caacgattac tgatacataa ttagctgaca agtatcaaac aactgctata
     1921 atactaaaca agaattcttt aaatcaatgc tctaggagat cgtggcttat agataattta
     1981 tatataaacg acataaccaa ttgtttttag ttatatctaa tgttcttata tcagaatttc
     2041 attcgaagat catttgttat taataaatta taagttggat ttaaatttgg atatatcatc
     2101 gattttttct tctttatcaa gaatggatat tcaaacttca tattttaaaa tggaaagttt
     2161 taagttaatt gtagcacatc tgctttagtg atgaaacaat catgtatagt cattacttta
     2221 actatggctt tcagtatcat gttaatagcc gtaggaccgc ttggatccgc atcagcacaa
     2281 caaagtaccc cttttgatgc agttgccaat actacaggag gagctggtgg aaatgcaact
     2341 ggaggaggag ctggtggaaa tgcaactgga ggtgctaatg ctgctgaacc aggaattgga
     2401 actgccagcg aattagaaaa ccttactcaa ggcggccctg aagcactcac aaataatacc
     2461 gaagtgactg atccagctac tggattagcc gacttgcaaa aagaacaaac tagtactgac
     2521 ccaaatatga caacaccttc aggataactc tgatggtagc actactatcg taagagtctt
     2581 aaattttttt atatatgttc aataatgata atttgtcaaa aacagtgcag aacagacatt
     2641 aatt
//
LOCUS       DATAAS010000288         3671 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2468169, whole genome shotgun sequence.
ACCESSION   DATAAS010000288 DATAAS010000000
VERSION     DATAAS010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3671)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3671)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3671
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2468169"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..709
                     /locus_tag="VHF08_04710"
     CDS             <1..709
                     /locus_tag="VHF08_04710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067980.1"
                     /translation="LVTSGKFAYSRGEANSKNVDWLSLIIPQHAMAIKSELQKMNAEG
                     FVPAALNDIVSPADAKKRYDASIRWIDAHKHAIVSNGPFFLDNFNPSGRTITIKAYRD
                     NTYPFDQGHWSLFESPRLATIKKVVTPNFVTIGQSSKIVTYIDVDGQPSNNASINYFI
                     SDKDGKLIIKGKAEQNNNEDGNFQINLKSNETSKLSVGPNLLKIFANSNYAFRPDLST
                     RTILAIPGANSTLNTLT"
     gene            1450..2451
                     /locus_tag="VHF08_04715"
     CDS             1450..2451
                     /locus_tag="VHF08_04715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2067981.1"
                     /translation="MIVVFVVLVITIGLFGETMNKVLRDTVDVNIITQVNEGNIKFET
                     IQARQKYIDTQKDLQYKTLGLDEPWYSPTRFFNTFFKVMILDLGNSYFFTSESGSSSV
                     RDIIIERIPRTLLLFTTSTIVITIVGLFLGAFVANKAGSISDRMSSALAVFSTSFPTW
                     WIGMLMIFVFAFAYHIFPARSTPLTSPSDPSYILDLLYHMILPFITITLVGFGSWAYI
                     VKYFVRNILSEDYITSKRAMGISKRKILYSHALKNAAPPIITVILQSLAASFGGSIIV
                     EAVFDWPGIGKLYYDAIGLSDFPIIIGLTYISTLIFVVAVLIMDLFYVFFDPRIKTG"
     gene            2448..>3671
                     /locus_tag="VHF08_04720"
     CDS             2448..>3671
                     /locus_tag="VHF08_04720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2067982.1"
                     /translation="MTNQIVSRSVFMTEFLQYKSGIAGVIILVSLIIITLYAILAIPL
                     ESFRQWNNPNYWIDYPKAAAPQWTNIGIFGPKQFEHLIMTLDDASITTVPIADNIRTE
                     IHSYTLDFLYDSYPSDFMIPYSARYGQIPPLLQVDVTRPDGEEFRIYYSSLPSSLATN
                     NENQFSSRIFSTDPAMAEYLHEISYSFRYPQDASKPQVMIFSDIEEKKVLKGKYLIKE
                     TFYLFDNSDTVLESGLILGGRVYGLFGTDELRRDLAIGILWGTPIALFIGASVSIASV
                     IIGLLYGVIAGYKGNRTDEMLMRINDIFYTLPTLPLLIIMSITLGRSIFLITGFLVIF
                     GWVGIVRVTRSLAMQIRNLQYVEAAKLMGQSELKIIFKHVIPQLLPLTFASIAISVPA
                     AILGEAALSFLGLGDP"
BASE COUNT         1164 a          650 c          665 g         1192 t
ORIGIN      
        1 gttagtcact tctggaaaat tcgcatattc acgaggagaa gcaaattcga agaatgtcga
       61 ctggctatct ctaattattc ctcaacatgc gatggcgatt aaatcagaat tgcagaagat
      121 gaatgcagaa ggctttgtac ctgcagcttt aaatgacatt gttagccctg ctgatgcaaa
      181 gaaacgctac gatgccagca tcagatggat tgatgcacac aagcatgcaa tagtaagcaa
      241 tggtcctttc ttcttagata atttcaatcc atcaggaagg acaattacca ttaaggcata
      301 tagagataat acttatccat ttgatcaagg acattggtca ttgtttgaat ctcccagact
      361 tgctaccata aaaaaagtag tgacgccaaa ttttgtaaca ataggccaat cttcgaaaat
      421 agttacatat attgatgttg atggacagcc aagtaataat gcatctatca attactttat
      481 ttctgataaa gacggaaagc taatcattaa aggtaaggca gaacagaaca ataacgaaga
      541 tggtaatttt cagatcaatt taaaatctaa tgaaacatca aaactttctg taggtcctaa
      601 ccttttgaaa atatttgcta acagtaatta tgcttttcgt cctgatcttt caaccaggac
      661 aatcttagca attcctggtg ctaatagcac attgaataca ttgacttgag gaaaacagga
      721 agaacaaatt tcccaaaaca ttgcaaccaa atcaaaacaa gatgaaagaa aatgttcagg
      781 atatcttatt ggtggagcga cttatggatc gcatcttgcg caacaagtca tgtatttgtg
      841 aaatttagag ataattttat tctgtcaaca acaacaagct gcatgacatt catgaattct
      901 tttaacttaa tttattattc ctttagtcct aaagtagcag aatatataag agagaagtca
      961 tggttacaac agagacttag agttggatta taccaatgtt tgagatattg ttgttggcag
     1021 aaaggttact ctattattat caaccgtgga gtggagaaat agggactctt tttgcttaac
     1081 aatcgcaagc atattgatac gaacaacata tttatcacta ttatccattg ttgcatgaca
     1141 gtcaggctta agagttaact taaaaaattg aaaacttctc taactgtatt attttgtatc
     1201 ttcgtcactt gtgtaggtgt tggtttattg tttaatagtt cgtatatatc atatccataa
     1261 gcacggtact atttgtcata gcaattttcg ggaattttgt aatagtatgc tctaacttaa
     1321 taaatgcact tatccagaag ttgaaaatga ttatacattc cagagactat taatacaagt
     1381 tatctttatg atatcaaact aggcttgata ggctttcctc tttatctgct aaagagatta
     1441 atcaatataa tgatagttgt ttttgtggta ttagttatta cgataggtct gtttggcgag
     1501 actatgaaca aagttttgag agacacagtg gatgtcaaca ttattacgca agtaaacgag
     1561 ggcaatataa aatttgaaac catccaagcc cgccaaaaat atatcgatac acaaaaagat
     1621 cttcaataca aaacactagg gctagacgaa ccctggtatt cacctacacg gtttttcaat
     1681 actttcttta aggtaatgat actagatcta ggaaactctt atttttttac ttcagagtct
     1741 ggatcttcga gtgtacgcga tatcataata gaaagaatac ctaggacatt attattgttc
     1801 actacatcga caatagttat aacaattgtc ggactatttc ttggtgcttt tgtagcaaac
     1861 aaggctggat ccatttcaga tagaatgagt tctgcactcg cggtatttag cacgagcttc
     1921 cccacttggt ggataggtat gttaatgata tttgtatttg cgtttgcata tcacattttc
     1981 cctgctcggt ctactcctct tacttcaccc tctgacccct cttatatttt ggatttacta
     2041 taccacatga tattgccatt tataacaata actctagtag gttttggatc atgggcatat
     2101 atagtcaaat attttgtcag aaatatctta agcgaagact acataacatc caaaagagca
     2161 atgggaatat ccaagagaaa gattctttac tcacatgctt taaaaaacgc agccccaccc
     2221 attataactg tcatactcca aagtttggcg gcttcctttg gagggtcaat aatagtggag
     2281 gcggtttttg attggcctgg aattggtaag ttatattatg acgcgatagg actctcagat
     2341 ttccctatta ttataggtct tacctatatc agtactttaa tttttgttgt tgcagtattg
     2401 attatggatc tcttctatgt cttctttgat ccaaggataa aaacaggatg accaatcaaa
     2461 tagtttctcg ttctgttttt atgaccgagt tcttgcaata taagagtgga atagcaggtg
     2521 ttattatttt ggtatcgctg attataatta ctctgtatgc tattctagca atcccattag
     2581 agtcatttag acaatggaat aatccaaact attggattga ttatcctaaa gcagcagcac
     2641 cgcaatggac aaatatcgga atctttggtc ctaaacaatt cgaacatcta atcatgactt
     2701 tagatgatgc ttcaataacc actgtaccaa tcgctgataa tatacgaact gaaattcatt
     2761 cctataccct agatttctta tacgattctt atccaagtga ctttatgatt ccatactcag
     2821 cgcgatatgg tcagatacct ccattgttac aggtcgacgt gaccagacct gatggagagg
     2881 aatttaggat ttattattct tctttacctt catctctggc tacgaacaat gaaaaccaat
     2941 tctcttccag aatattttcc accgatccgg ctatggctga atatcttcat gaaataagtt
     3001 actcttttag atatccgcag gacgcatcaa aaccgcaggt aatgattttt tcagatattg
     3061 aagaaaaaaa agtcttgaag ggaaaatatt tgattaaaga aacattttat ctttttgaca
     3121 attctgatac tgtgctagag tctggattaa ttcttggggg aagagtgtat ggattatttg
     3181 gtaccgacga attacgtcga gatctggcaa taggcatcct gtggggaaca cccatagcat
     3241 tattcattgg ggcgagtgtg tcaatagcgt ctgtgattat aggattgctt tacggcgtca
     3301 tagctggata caaaggaaat cgaaccgatg aaatgctgat gcgaattaat gatatattct
     3361 ataccttacc tacccttcct cttcttatta tcatgtctat cactcttgga cgaagcatat
     3421 ttcttattac tggatttcta gtaatctttg gctgggttgg tatagtaaga gttaccagaa
     3481 gtcttgccat gcaaataaga aatttacagt atgttgaagc agcgaaatta atggggcagt
     3541 ctgaactaaa aataatattc aaacatgtaa tcccacaact tcttcctttg acgtttgcaa
     3601 gtattgctat ctcagttcct gcggccattc ttggagaagc agctctcagt ttcttgggat
     3661 taggagatcc t
//
LOCUS       DATAAS010000289         2028 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1480711, whole genome shotgun sequence.
ACCESSION   DATAAS010000289 DATAAS010000000
VERSION     DATAAS010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2028)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2028)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2028
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1480711"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1736
                     /locus_tag="VHF08_04725"
     CDS             <1..1736
                     /locus_tag="VHF08_04725"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEX2067983.1"
                     /translation="DDTNRFSTEILKNPHEISDDIIRLTQNSSNISLCFAVQGPQLTD
                     SKFFDLYSRALQKYEKKGNDDENSSGSKNAIRWITTIDKKEEIPLIRILLGLGMQIRH
                     SRFLTPMSFIIGDREIVASIEKMIFDKGINSALYSNEPPYIEHFKKVFEELWKNSVDA
                     VERIKDIEEAIDSGETEIIYRPLKTQELFINLIKSAKKEVLIIFPTVNAFYREVGIGI
                     IQLLRQAAEERDINVRIITPTTDIIERLISTMIQSEYKENFVIERTIPTASTNTVTTV
                     VVDRNESLVIEQKDDSKMNFADAIGLSTYSNSKPTVSSYIAIFENFWNQIKQYDELKL
                     RDDMQNEFINIASHEMKTPTQAILGYTELLQNHPEMREEMIQAIQRNVNRLQKLTSDI
                     LDVARIENRTLKLNKEKFDINKKIANVIKDVEKQISDSNKLKILFTEPSEAIFVEADK
                     VRIYQVIANLLNNAIKFTKEGDIVVSAKVTQKKAMNREEGDRDYGSNSSSSRQVIVSV
                     KDSGAGIDPEILPRLFTKFATKSDKGTGLGLFISKSIIEAHSGKIWAENNPDGKGAMF
                     AFSLPLSTNQP"
BASE COUNT          813 a          293 c          361 g          561 t
ORIGIN      
        1 aagatgacac caaccgtttt tcaactgaaa ttctgaaaaa ccctcatgaa atttcagatg
       61 atataatacg attaactcaa aattcttcta atatttcatt gtgctttgca gtacaagggc
      121 cccagttaac tgatagtaaa ttctttgatt tatattcaag agctcttcag aagtacgaaa
      181 aaaaagggaa tgacgatgaa aatagcagtg gtagtaagaa tgcaataaga tggatcacaa
      241 ctatagacaa gaaggaagag atcccattaa ttaggatact tctaggttta ggtatgcaaa
      301 taagacattc aagattttta acaccaatga gttttataat tggagataga gaaattgttg
      361 cttcaataga aaaaatgata tttgataaag ggatcaatag tgcactatat agcaatgagc
      421 ctccatatat tgaacatttc aaaaaagtat ttgaagaatt atggaagaat tctgttgatg
      481 ctgtagagag gataaaagat atagaagaag caatagactc cggggaaact gagatcattt
      541 atagaccatt aaagacacaa gagttattca tcaacttaat caaatctgca aagaaagagg
      601 tcctaataat atttcctact gttaatgctt tttatcgaga agttggcata ggtataatac
      661 agttactaag acaagcagca gaagaacgcg atataaatgt tagaatcatt acacccacaa
      721 ctgacattat tgaaagactg atatcaacta tgattcaatc tgaatataaa gagaattttg
      781 ttatagaacg aactatacca acagcatcaa ctaatactgt aactactgtg gtagttgata
      841 ggaatgaatc tttagtaata gagcaaaagg atgactctaa gatgaatttt gcagatgcga
      901 tagggttatc tacatactca aatagcaaac caactgtttc ttcttatatt gcaatatttg
      961 agaacttctg gaaccagata aagcaatacg atgaattaaa attgcgtgat gatatgcaga
     1021 atgagtttat caatatagca agtcatgaaa tgaaaacacc tacacaagct attctaggat
     1081 atacagagct attgcaaaac catccagaaa tgagagaaga gatgatacag gcaatacaga
     1141 gaaatgtgaa tagacttcag aaacttacta gcgatatatt agatgttgcg agaatagaaa
     1201 accggacatt gaagttaaac aaagaaaaat tcgatataaa caaaaaaata gcaaatgtta
     1261 taaaagatgt agaaaagcaa atctctgatt ctaataaatt aaaaatatta tttacagaac
     1321 caagtgaggc tatattcgta gaggcagata aagtaagaat ataccaagtt attgcaaatc
     1381 tactaaataa tgctataaaa ttcactaaag aaggagatat agtggtatct gcaaaagtaa
     1441 cacaaaaaaa ggcaatgaat agagaagaag gagatagaga ttatggtagc aatagcagta
     1501 gctcgagaca agtaatagtg agtgtaaaag atagcggagc agggatagat cctgagattt
     1561 tgccaaggct atttacaaag tttgctacaa aatctgacaa aggtactgga ttagggttgt
     1621 ttatttcgaa aagtattatt gaagcccata gtggaaagat atgggcagaa aataatcctg
     1681 atggaaaggg agctatgttt gcatttagcc tcccattatc aacaaatcaa ccataaccat
     1741 aacaatgaca gtattataat tgaggtacag ttagaaaaga aaaaaatatt aaaaattatc
     1801 atccatataa acctaataag aaaaaccttt aaacctcaga ttatttcttc tattgtaggc
     1861 aggaacatac tttagcacga tatcatcaat gattacgtcg agcctactaa taacgcattg
     1921 ctagatctaa tctttctttt tatcctaaaa gtttgagtga caaatatgag tcaatcctgt
     1981 cttactttca ccgaacctgc taactatatt gttcttctac aactatcg
//
LOCUS       DATAAS010000290         2832 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_304496, whole genome shotgun sequence.
ACCESSION   DATAAS010000290 DATAAS010000000
VERSION     DATAAS010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2832)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2832)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2832
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_304496"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(506..643)
                     /locus_tag="VHF08_04730"
     CDS             complement(506..643)
                     /locus_tag="VHF08_04730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067984.1"
                     /translation="MCDVYFVLNRCRVTRVTEKVTPRIVVHPPDIAESMLLGCMRTTC
                     E"
     gene            complement(1171..1368)
                     /locus_tag="VHF08_04735"
     CDS             complement(1171..1368)
                     /locus_tag="VHF08_04735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067985.1"
                     /translation="MSDEENKSSLSSSEEESNKAQRVVKYNEKFNVPEQTEEEEATIH
                     ENAETENLADNSEIKRRKNGL"
     gene            1411..1749
                     /locus_tag="VHF08_04740"
     CDS             1411..1749
                     /locus_tag="VHF08_04740"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067986.1"
                     /translation="MVNGNAFENMTSKITIVTRFYSRTSIGVQAKEEVIALQPEYKFT
                     SHKKDDSSADAKSHYNRNGRICNYSFYLCYIISNIFFKWSYILVIIITDIFFNIMRDF
                     LNSLESNTFY"
BASE COUNT          933 a          462 c          437 g         1000 t
ORIGIN      
        1 tggaatataa gacaatgtgg aatcaatcaa tttgcagctg gaattaaaac aaggttcaat
       61 tagggtaaga gcaaacttgt ggcaaggcgt attagtggat aaaacatttg aaggacaaga
      121 ttgctatatg caaatgctat gttttattaa acaagcatat cctaatgatc aatatcttat
      181 tgccactata gttctcaaat agattatttt agaagaagca attgtttact agaatgtatc
      241 taaatgtatt tgccaacaat cgcgcagata gaaaaaattg attaaaagca atagtagaag
      301 acgatgttct ctattattta tgctgttgtc atgtcaacgt atcacatgga taatatagca
      361 gactgtcttc atttaaacaa tctctattct ctattctatg gtgttcgcaa tagactcgat
      421 aatgttgtct ctaaaatcaa caaggttaga tacagtatta tatacagaag aagttagctt
      481 cgatatttat tacctagagc cactattatt cacaggtagt cctcatgcag cctagaagca
      541 tactctcagc tatatcagga ggatggacta ctattctagg agtaactttt tcagttactc
      601 ttgtaactct acatctatta agtacaaagt atacatcaca catagttaat acatttgagg
      661 atgataaaat taatcaacta agactaggac aatctatctt tctaatatta gtgaagatcc
      721 aggcatatct tttgtactat aataggaata aacattgctg tatatcttgc tataataacg
      781 ctatttatct ttgttatttt ttatgaaata tcagttcata tcttagacca aaatactaat
      841 tcttagactg gtaaaacgaa ctataaattc tatgaccttt gaattatgaa aagaacggca
      901 gataaaaaat actaatattt ttgataataa tgactattga ttttttgata atattttgaa
      961 gtcttatgac ataaagtcta ggaggagtgg aattccgcgc tctttgtact gaaagaatgt
     1021 atataaagac tttatagata ttgtccatct tcttctttta attcaaaaat cttggataga
     1081 atgactgcct gctttatttg gcactcttaa ttaaaacgga tctcgttgat ggataacatt
     1141 ttagtgatta tttatctctt aactattaaa ctacagacca ttttttctac gttttatctc
     1201 actattatct gctaaatttt ctgtttctgc attttcatgt attgttgctt cttcttcttc
     1261 tgtttgttcc ggaacattaa atttttcatt atattttaca actctttgtg ccttattact
     1321 ctcttcctct gatgacgata atgacgattt attttcttca tcgctcatta tttgttcaat
     1381 ttattctgca ctatataata aaaaacaatt atggtaaatg gtaatgcttt tgaaaatatg
     1441 actagcaaaa taacgatcgt caccagattt tattcgagaa ccagcattgg tgtacaagcg
     1501 aaagaggaag ttatcgcatt acaaccagaa tacaaattta cgagccataa aaaggacgac
     1561 tcgagtgctg atgccaaatc ccactacaac agaaatggca gaatttgcaa ttattccttt
     1621 tacctttgtt atattattag caatatattt ttcaaatggt catacatact agttattata
     1681 ataactgata ttttttttaa tattatgaga gattttctaa actctttgga gagtaatacc
     1741 ttttactagg cattataaga tacctcttga ataatagacc tatctgtaat aaggtcagaa
     1801 aaagatatcc tcgtgtcaat tatatctaca ccagcatcca ccctagtcag cataatttct
     1861 ttgagtttta atatcctata gcctgtcaaa atataacaac ttagtccaga ttgattcttt
     1921 tttgatattc ttgaaacttg ttgaataata gtaggccctt attattattc ctgcttttag
     1981 agctagagtg gtttagtgtg aagatctata taattaaatt gcttatttct ttagaaatat
     2041 tatattaagt gaattgttta caggtattcg tttgaattcg cgataaccac gtttttgata
     2101 gagatataga ttccgagtac tcctaggacc agtaaacagt tcataactat cagctgaagt
     2161 aagtattgct cgattgattg cataagcata taattcctat acctttgttt tgacattcta
     2221 gtatgacgct caaccgtttg atatacgctg tttctttctc aaggtaacca cgcactgaac
     2281 caattttata cctctcttct acggccttca gaaatacatg ctgtgagaaa tcttgcttaa
     2341 tcccctctaa tgtttctatc aaaggagaaa tgccacagtc atggtagttt cagcctcact
     2401 tagataagcg cacttttgaa attgaagaat tgtttcggca tctcctagaa ctgcacgatt
     2461 aatcttcata agtatataat gagaccaaaa acaatattta tgattgtttt gtaatgtttt
     2521 agaattggct ctggtagctt taccaggtat atatgactat atatttacgt tccaagtctt
     2581 ttgtctttga accatatcta tgactatcag cccttctcgg ggtaaactgt aaaaaacaat
     2641 atcgtataat cttattcatg tcggagaaca caaagaaaaa agacgtagcg ccaagtagga
     2701 gtgaagatga aaaacctcat ctaaacgact atttgagtaa agacaaagaa ttaccatcag
     2761 atcgaaagaa tggtcatatt tgtgacgatt gtggtaaatt attctctacc atggaagagc
     2821 ttactagtca tt
//
LOCUS       DATAAS010000291         2413 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2998278, whole genome shotgun sequence.
ACCESSION   DATAAS010000291 DATAAS010000000
VERSION     DATAAS010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2413)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2413)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2413
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2998278"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            197..484
                     /locus_tag="VHF08_04745"
     CDS             197..484
                     /locus_tag="VHF08_04745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067987.1"
                     /translation="MTGLIITLFASDTRSLKSFKVPVYDPISLYALVGNVIRFNFNSP
                     PNNPTGTTLTLLLSIFISVSTVLDKFTKSITASGPVLSVNSITVITGSSFL"
     gene            complement(552..743)
                     /locus_tag="VHF08_04750"
     CDS             complement(552..743)
                     /locus_tag="VHF08_04750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067988.1"
                     /translation="MHHWEENLCDKPRSLGIYNGGGCAAYGSIKNAKVRPNDNVIIVG
                     VGGLGLMDIPLAKQLPEQR"
     gene            791..985
                     /locus_tag="VHF08_04755"
     CDS             791..985
                     /locus_tag="VHF08_04755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067989.1"
                     /translation="MLNDNLFFSSATSSPKLWTVAALSFPDVKGYFTPLSVVFRNCPL
                     SLDMLLPTNECHYDDIRQMI"
     gene            complement(1091..1687)
                     /locus_tag="VHF08_04760"
     CDS             complement(1091..1687)
                     /locus_tag="VHF08_04760"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEX2067990.1"
                     /translation="MTLKPEVEHTRHPAYKINPLFVNRWSPRSMSGEELNDQDIMSLF
                     EAARWAPSSFNNQPWRFIYAKRNTQHWDRLFSLLYEGNKVWAVNAAVLVVVISRKNFE
                     YDERPSITHQLDAGAAWENLALEASLHGIVTHGMEGFDYKKARVDLGISDNFDVMAMI
                     AIGKRGPKENLPLKLQEREFPNDRKPLADIVMEGYFRE"
     gene            1869..2261
                     /locus_tag="VHF08_04765"
     CDS             1869..2261
                     /locus_tag="VHF08_04765"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2067991.1"
                     /translation="MNEPELASKKILVVDDESDITFTLQSILEDNGFIVDIYTNPVSA
                     LRNFQANSYDLVLLDIKMPDMDGFELYNKMKEIDNRAKICFLTASEMFYEDLRKARFE
                     LDESLGERYFIQKPIATKELLRRINAII"
BASE COUNT          745 a          455 c          362 g          851 t
ORIGIN      
        1 ctgtactgta ccatttactt gttctttact aattatttcg tattctttga gaacctcttc
       61 tgttgaagga tttactgtcg taaattttga tacaggccct ttttctttca aggatttatc
      121 acaccttttc aattatttta ctgtccttta atatttgtag agcttttgta gcttcatctg
      181 tttaaatcga tttgaaatga caggcttgat tataaccctt tttgcaagtg atactagatc
      241 tctaaaatca ttcaaagttc cagtatatga tccaattagt ctgtatgctc ttgtcggaaa
      301 tgtaatcaga tttaatttta attcacctcc aaataatcct actggtacta ctcttactct
      361 tcttcttagc atattcatat cagtttcaac agttttagat aagtttacaa agtcaataac
      421 agcatcaggt cctgttttat ctgttaactc tattactgtt attactggat cttcttttct
      481 ttaattaaca acagagtttg caccattttc cttggctact ttcaacttat tgtcatttaa
      541 atccatagct attatctttg ctccggtaac tgctttgcta gaggaatatc catcaaaccc
      601 aaaccgccaa ctcctacaat gatgacatta tcatttggtc taactttggc attcttgatt
      661 gatccatatg cagcgcatcc tccaccattg tatataccaa gtgatcttgg tttatcgcat
      721 agattctctt cccaatgatg catgcagggc aaactcctcc tcctatccaa ggatataata
      781 atacgttctc atgcttaacg ataatctctt tttttcatct gccacttctt cgcctaaact
      841 ctggactgtt gctgcacttt catttccaga tgtaaaagga tatttcacac ctctatccgt
      901 agtttttaga aattgtcctt taagtctcga tatgctcctt cctacaaatg aatgtcacta
      961 tgacgacata cgccagatga tataactttt acaagaactt gtgaaccttt tggctttggt
     1021 acctccagat cttgtatttc taaagattct ttggtctaat gatccttgca gctttcatca
     1081 tgaccattca tcattcccta aaataccctt ccattacaat atctgccaaa ggttttctat
     1141 cgtttggaaa ttctctttct tgaagcttta gaggaagatt ttcttttggt cccctcttac
     1201 caattgcgat cattgccatg acatcaaagt tatcagaaat tcctaagtct actctggctt
     1261 ttttatagtc aaaaccctcc atgccatgag taacaattcc atgcagagat gcttctaatg
     1321 ctaagttctc ccatgcagca ccagcatcta attggtgagt tatagaaggt ctttcatcat
     1381 actcaaaatt cttccttgag attacaacaa ctaatacagc ggcatttact gcccatacct
     1441 tgttaccttc atacaaaaga ctgaagagtc tatcccagtg ctgggtattt ctttttgcat
     1501 aaataaatct ccatggttga ttattaaaag acgatggtgc ccatctagca gcttcaaaaa
     1561 gactcattat atcttgatca tttaattctt ctccactcat tgacctagga gaccatctgt
     1621 taacaaacaa aggatttatt ttgtacgcag gatgtcttgt atgttcgact tccggtttga
     1681 gcgtcacaat ctggtgtgag cagtatagta tatagtgata tcagatatat cttgtttaaa
     1741 gtaatcttat attctgatat gataattaat atatttatat ttcatgatta ttcaaaatat
     1801 ccacatatga ataatcatca agataagagg ttttagaagt cagaatcaca aggaagagca
     1861 atatagcaat gaatgaaccc gaattggctt caaaaaaaat attggtagta gatgacgagt
     1921 cagatatcac tttcacacta cagagcattt tggaagataa tgggtttata gtcgacatat
     1981 ataccaatcc tgtatcagca ttaagaaact ttcaggctaa ttcatacgat ctcgttttac
     2041 ttgatattaa aatgcctgat atggatggat ttgaattata taataagatg aaagaaatag
     2101 acaatagagc aaaaatatgt tttttaactg ctagtgagat gttctatgag gatcttagaa
     2161 aggcacgttt tgaattggat gaatctttag gtgagcgtta ctttattcag aaacccatcg
     2221 ccactaaaga gctattaagg agaataaatg caataattta gtctaattca cacaataagt
     2281 gtttggatat aaataatcat aaggattaag aagaaagaga gaaataagga acagaaataa
     2341 taaaaagaac ataaaaaata taatatcata aagtattcaa ttattcttcc tttttattgt
     2401 agattatcaa ggt
//
LOCUS       DATAAS010000292         3138 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_305432, whole genome shotgun sequence.
ACCESSION   DATAAS010000292 DATAAS010000000
VERSION     DATAAS010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3138
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_305432"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..991
                     /locus_tag="VHF08_04770"
     CDS             <1..991
                     /locus_tag="VHF08_04770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HEX2067992.1"
                     /translation="GIELVIDDYSGTLSALAVTEELKKIAMTLTLDQMVMLEIDNNNK
                     STQGFTIKNLASPDIPDHLPNRSKAEYYAVLISDLHVGSKYFMETEFMRFLTWLSSSE
                     DELVRKIRFLCIGGDLIDGIGIFPNQDKELLELNTSKQMAHAIDLLAKIPKHIKVFII
                     PGNHDPGRRSLPQPSLPRKDADKLYSFENFTMLGNPAFLELNGVKVLMYHGQSLDDII
                     ATTPGLSYSKPAEAMKVLLKARHLSPIYGQRTPIAPEQEDMMVISEVPDVFHSGHVHV
                     IDVKNYRGTLIVNSGTWQAQTKFQQTMGIVPTPGFAILINLATLQPFQMDFNH"
     gene            complement(992..2206)
                     /locus_tag="VHF08_04775"
     CDS             complement(992..2206)
                     /locus_tag="VHF08_04775"
                     /inference="COORDINATES: protein motif:HMM:TIGR02928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2067993.1"
                     /translation="MSDDFLDNIFEKAAIGETLIKNRRTLTIDYVPEKLPFRDEETKT
                     VAQTLSVVLKGARPSNLLLFGKPGTGKTAVVKKVIEHLHKKAKELGLEVIVPIINTKS
                     ANTAYKVLYEIAEDMGINKEEKKLQVHFTGLSMGEATDRILDFIGKKKLNVVLVFDEI
                     DSLVDKNGDDILYNFTRANERISKGGFISLIGISNSLTFKDKLDPRVRSSLSEEEMVF
                     NPYKVEQLQKILIDRARVAFNDGAIDGAAINLCAAMAGKENGDARKAIDLLRVAAEIA
                     EREKADKVEEKYIRLAQEKIEKDTNFEILKNSTTHTKIIIMAIMKSKIGNTGEVYEIY
                     SSLCRHTEQEPLTQRRITQIISELDQLGLVISDIMNQGRYGRSQRIKITVPVLTIKEA
                     LKDDPILSALLI"
     gene            2728..>3138
                     /locus_tag="VHF08_04780"
     CDS             2728..>3138
                     /locus_tag="VHF08_04780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067994.1"
                     /translation="MSASKKKIKIQLEDAEGGKYNLSLEGNVSKEKIMKVFELMDLIN
                     LDGKSNSGYNDDREIQNKNLASVGSKIWGIIEHKFPYSTFTSSDILEIYEDEYNEPIQ
                     LSIISTYLSRYSDRGKLGRSRKGKEWIYKITRPSQ"
BASE COUNT         1005 a          548 c          514 g         1071 t
ORIGIN      
        1 tggaatagaa ttagtaattg atgactacag tggaacattg agcgcacttg cagttactga
       61 agaactaaag aaaattgcga tgacacttac gcttgaccag atggtcatgc tagaaattga
      121 taataataat aaatctaccc aaggttttac tataaagaat ctagcttctc ctgatattcc
      181 tgatcatctt cctaatagat ctaaagcaga atattatgcg gttttaattt ccgatctaca
      241 tgtgggtagt aaatatttta tggaaacaga atttatgaga tttttaacct ggctttcatc
      301 aagtgaggat gaacttgtac gaaaaatcag attcttatgt attggcggag atttaattga
      361 tggtatcgga atatttccta atcaggacaa agaattgctt gaactcaata ctagcaagca
      421 aatggcacat gctatagatt tgcttgctaa aatcccaaaa catatcaagg tttttataat
      481 tcctggcaat catgacccag gtcgaaggtc tctaccgcag ccttcattgc cgagaaaaga
      541 cgctgataaa ttatattcct ttgagaattt tacaatgctt ggaaatcctg cctttctcga
      601 attaaatggt gtaaaggtat tgatgtatca cggacagagt ttagatgaca ttattgccac
      661 aacacctggt ctaagttatt caaagccggc agaagcaatg aaagtattgc tgaaggctcg
      721 tcatttatca ccgatatatg gacaacgtac tcctatagca cctgaacaag aagatatgat
      781 ggtgatttca gaagttcctg atgtatttca ttcaggacat gtccatgtta tagatgttaa
      841 aaattatcgg ggaaccctga tcgtcaattc aggcacatgg caggcacaaa ctaaatttca
      901 acagacgatg ggtattgtgc caactccggg atttgcaatt ctcattaatc tggctaccct
      961 acagccattt cagatggact tcaatcatta atcatatcaa taatgcagag agaatcggat
     1021 cgtctttcaa tgcttcttta atagttaaaa ctggaacagt aattttgatt ctctgtgatc
     1081 taccatatcg tccttggttc attatatcac ttattacaag accaagttga tcaagctcac
     1141 ttattatttg agttatacgg cgttgtgtaa gtggttcttg ctcagtatgt ctacataatg
     1201 acgaataaat ttcatatact tcaccagtat tgccaatttt tgatttcatt attgccatta
     1261 ttattatctt agtatgagtt gtagaatttt ttaatatctc aaaattagta tctttctcta
     1321 ttttttcttg agctaatctt atatattttt cttctacctt atctgccttt tctctttcgg
     1381 caatttcggc ggcaaccctt aagagatcaa ttgcttttct tgcatcacca ttttcctttc
     1441 cagccattgc tgcacacaga tttattgctg caccatcaat agcaccatcg ttgaatgcaa
     1501 ctctagctct atctatcaga atcttttgta attgttctac tttatatgga ttaaatacca
     1561 tttcttcctc actcaaactg cttcttacac ggggatcaag cttatctttg aatgtgaggc
     1621 tgttagatat tccaatcaaa ctaataaatc cccctttgga gattctttca tttgcccttg
     1681 taaaattata caaaatatca tcaccatttt tatctacgag tgaatcaatt tcatcgaaca
     1741 caagaacaac atttagtttt ttctttccaa taaaatcaag aattctatct gtcgcttcac
     1801 ccatagatag tcctgtgaaa tgcacttgta atttcttttc ctctttgtta attcccatat
     1861 cctcagctat ttcataaagt actttgtatg cagtatttgc agactttgta tttataattg
     1921 gcactataac ttctaatccc aattccttgg cttttttatg tagatgttca attacttttt
     1981 taactactgc agttttacca gtacctggtt taccaaagag taacagattt gatggtctag
     2041 cgcctttgag aactacagat agtgtctgtg cgactgtttt agtttcttca tctctaaatg
     2101 gaagtttttc aggaacgtaa tctattgtta atgttcgacg gtttttgatc aatgtttctc
     2161 ctatagcagc cttttcaaag atgttatcaa gaaagtcatc gctcatacta atccacacac
     2221 acacccctat ctttcttttc cagcataaga gaaaaccttg ttaatattat gttaacagat
     2281 tgttaacaaa ttgcttttaa agcataaaat ctaattttat tgattaaata ataaaatatt
     2341 atatttatat tttatcaagc tatgaggaaa gacttggaca agaaatgata gggtgtgact
     2401 tgccatgaaa aatttataca ttgacagact tgttaacata tcattagata aaaataaaaa
     2461 tggctcaata taaccccttt atttccactg gactgttata gttgctgtta acagtgttaa
     2521 tatgaataat tagacccctt tatttccact ggaactttaa gacttcttgt tattataaat
     2581 taattgatta acaattttct tctgttaata actttaggac catctcatgt agagttaaca
     2641 aaaactaagc taattgttat tagagttatt actaacgctg ttaagttgtt aacgtgttaa
     2701 cttgtcaaca ggtaaagatg ctctagattg agcgcaagca aaaagaagat aaaaatacaa
     2761 cttgaagatg ctgaaggagg taagtataat ctttcgctag agggtaatgt gtcaaaagaa
     2821 aagataatga aagtctttga attaatggat ctcataaatc tagatggaaa gagtaacagt
     2881 ggatataatg atgatagaga aatccaaaac aagaacttgg catcagttgg ctcaaagata
     2941 tggggtataa tcgaacataa atttccatat agtaccttta cgtcgtctga tattcttgaa
     3001 atatatgaag atgaatataa cgagcccatt cagctcagta taatctcgac ttatttgtca
     3061 agatattctg atagaggtaa actgggtaga agtcgaaaag gcaaagaatg gatatataaa
     3121 ataactaggc catcgcag
//
LOCUS       DATAAS010000293         1559 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1484526, whole genome shotgun sequence.
ACCESSION   DATAAS010000293 DATAAS010000000
VERSION     DATAAS010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1559)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1559)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1559
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1484526"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..196)
                     /locus_tag="VHF08_04785"
     CDS             complement(<1..196)
                     /locus_tag="VHF08_04785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067995.1"
                     /translation="MKRFSQFKLKKELIILFAVGVILLLDYAFPAYYNVLLVQAQLQQ
                     PSPIIGIKITSPIADQQVPVG"
     gene            435..1511
                     /locus_tag="VHF08_04790"
     CDS             435..1511
                     /locus_tag="VHF08_04790"
                     /inference="COORDINATES: protein motif:HMM:NF020014.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067996.1"
                     /translation="MNFNGCQQQQQHNHQLLQYFCSKCGILLKEEEESLIDNKKIVLT
                     PATATEQCLKCGSLLSSKNLIRKFKLKEPNTLEEQQHLASSLLLRRTSEELLFPKFQT
                     AYYDIEDRKRRITLDIEEIDSSITLTTEDCVGIIGEARYANTILIRLCVRALILKSQS
                     ELLEFAKKVIFIDAGGKNNSPDSFYQCVNFARQYGLDIKKVLQSIVVSRAFTIYQLAD
                     LIIYELPRVIQQLEAKVILISDLLNMFVCDPQIKIEEGERMIKEIINSLRKISSTTNN
                     TLIVVSLYRHHHHHYSSFSSSYLYEKILLPRFDKCIEITNSKKKKVNNVLDIRIHNHK
                     TIIMMVLVRTAVEHSHCQKETLFS"
BASE COUNT          589 a          230 c          251 g          489 t
ORIGIN      
        1 caccaactgg aacttgttga tcggcaattg gtgatgtaat ttttatacct attattggtg
       61 atggctgttg tagttgtgct tgtacaagta aaacattata ataagctgga aaagcataat
      121 caagaagtag aattactcca acagcaaaca atattatcag ttcttttttt aacttgaact
      181 ggctaaacct tttcatacct tataccaagt atctacgaca atattattgc ttataataat
      241 atggtggaga ataatatttg gggctctttt gtctggagac atattagaat agtattaacc
      301 atctaaattt catttattat atcttacggt attatagtta gtaagaggga aagaaagaaa
      361 taatctatga gatttatata tgtacctaat aatacaatat ttattaggta ctatacggta
      421 aagtcagttc tataatgaac tttaatggtt gtcagcaaca acaacagcac aatcatcaac
      481 ttttgcaata tttttgctca aaatgtggta tactcctaaa ggaagaagaa gaaagcctta
      541 ttgataataa aaaaatagta ttaacgccag ctacagcaac agaacaatgt ctaaagtgtg
      601 gttcactatt atcatctaag aatttaataa gaaagttcaa actaaaagag ccaaacactc
      661 ttgaagagca gcagcatcta gcatcttcgc tattattaag gagaacatca gaagagctgt
      721 tatttccaaa attccaaaca gcttattatg atattgaaga tagaaaaaga agaattacct
      781 tagatattga agagatagat tcttctatta ctctcacaac tgaagattgt gtaggtatta
      841 ttggtgaagc aagatatgca aacacaattc ttataagact atgcgtccgt gctttaatct
      901 taaaaagcca aagtgaatta ttagaatttg caaaaaaagt tatctttatt gatgctggag
      961 gaaaaaataa tagtcctgac tcattttatc agtgtgtaaa ttttgcacgg cagtatggac
     1021 tagacataaa aaaggttttg cagagtatag ttgtaagccg ggcgtttaca atctaccaat
     1081 tggcagactt gatcatatac gaattaccta gagttattca gcaattagaa gcaaaagtaa
     1141 tattgatttc agatttgctg aatatgtttg tatgcgatcc acaaattaaa attgaagaag
     1201 gagaaaggat gataaaagaa attataaatt cactaagaaa aatatcatca acaacaaaca
     1261 acaccttaat tgtagtatct ttgtaccgcc atcaccatca ccactattct tctttttctt
     1321 catcatatct atatgaaaaa atccttcttc caagatttga caaatgtatt gaaattacaa
     1381 acagcaagaa gaaaaaagtc aataatgtat tagatataag gatacacaat cacaaaacca
     1441 tcattatgat ggtattagta agaacagctg tagagcattc tcattgtcag aaagagacct
     1501 tattcagttg attttaccaa caaggtgatt tttactaatg ggaataaaga tttcatctt
//
LOCUS       DATAAS010000294         1584 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5168872, whole genome shotgun sequence.
ACCESSION   DATAAS010000294 DATAAS010000000
VERSION     DATAAS010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5168872"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(582..962)
                     /locus_tag="VHF08_04795"
     CDS             complement(582..962)
                     /locus_tag="VHF08_04795"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2067997.1"
                     /translation="MPPNKSILVVDDEFDIVNIIKLFLQKHGFTTYAFTDPLLALEHL
                     KINSKSYGLVLTDIRMPGMNGFELVKKVKSIHPAIKVLLMSAFDINDLELSKILTPIN
                     VDGYIQKPVSAKQLINIIEKHIQN"
BASE COUNT          538 a          218 c          242 g          586 t
ORIGIN      
        1 gaagtattca aatctcattg tgtgtgtttt gcaatttctt gacaatatat agatagcaaa
       61 gaaaagtaat agtaagaatt attgaaaaac tgtagcagca tatatggact cttcaagttt
      121 ttccaatttg gcaagggaca tagcaacagc tgaattgtag atataccata aaatatgtca
      181 acatagaatt atatcatatt gctttattaa gaggtttaaa tgtcatttgc agagaatatt
      241 ttatcatatg cattatatat attagtagtg agtgtcttta gttcaaaata acaattgatt
      301 ccatctataa actagtggtt ttattatctg ttacctatga ttgtatatat tcatattatg
      361 tcgaagcaag agagagtggt tgtggcagag ttgttttgtt atattcctaa gactcattct
      421 tcgttagagt catgctaata atacaccgtt tgaacatata atatgattac cagtgttact
      481 ccataagact atttgatatt ctatcaatga ttttaaattg tctcaagaca tatctcagaa
      541 aggttattat caattatacc acattatctt ctagagtttg tctagttctg aatgtgtttc
      601 tcaattatgt ttatcaattg ctttgcagat acaggttttt ggatgtagcc gtctacattt
      661 ataggtgtaa gaatctttga caattcaagg tcattaatat caaatgctga cattaacaaa
      721 accttgattg caggatgtat tgatttgacc ttctttacaa gttcaaatcc attcattcct
      781 ggcattctga tgtcggtaag aactaatcca taacttttag aatttatctt tagatgttct
      841 aaagctaaca atgggtctgt aaaggcataa gtagtaaaac catgcttttg gagaaaaagt
      901 ttaatgatat taactatatc aaattcatca tcaactacta atattgattt attaggtggc
      961 aatttgatct agtatcattt ttctatatgc acctgctatt aaagtcattg ttgtatactt
     1021 ttatgttaat cgaatgaatg aaatgcaaga atcaataaga atgactgtgt aactctccca
     1081 gataaaaagc tctcttaatc atttattcat aatagaaaac acgtattcat ccattatgat
     1141 gattgaatag gcgtatgtat attatctgtt atcataaggt tgacaataca ttatcatgag
     1201 tgtcaatttg tgttatatgt aaaataagag aatatccttg ctgatcctgg atggagaaga
     1261 tacaattgca tataaataga ctccatacaa agatcagata ataacttcaa ataagacttc
     1321 ttctgctatt caacactctg gaagaatctc tattatttac caattaacta aataatcttc
     1381 ttgaatctta aggtttttta aatacattaa aaattgattg atgagtattt atctaactca
     1441 aagaccaaaa attaaagtcg tagaggttat attgatattt gtctaccaat tgtacaggct
     1501 agctttttta ttctccatat tgctttgaaa agttggaact ttatactttt gtgttgaaaa
     1561 atatcgatgt attgatatta atgc
//
LOCUS       DATAAS010000295         2781 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4087661, whole genome shotgun sequence.
ACCESSION   DATAAS010000295 DATAAS010000000
VERSION     DATAAS010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2781)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2781)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2781
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4087661"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1120..1383
                     /locus_tag="VHF08_04800"
     CDS             1120..1383
                     /locus_tag="VHF08_04800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067998.1"
                     /translation="MPKGFGSRPNNDGKRNFNDWWNTVPADLKQKARQGDEQNKPLLN
                     QINYVLLHLHLAGKHDVKPSHDELKDWLHSGQVDVLRMTAAKK"
     gene            1702..1950
                     /locus_tag="VHF08_04805"
     CDS             1702..1950
                     /locus_tag="VHF08_04805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2067999.1"
                     /translation="MSKDNNNNEKTGQSSSQWAELIGELFDRLTGKGASVTYSFENFV
                     IDIPRAVGPRGQELGSAKWTINGKLLITAETHKSTGAG"
     gene            2286..>2781
                     /locus_tag="VHF08_04810"
     CDS             2286..>2781
                     /locus_tag="VHF08_04810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068000.1"
                     /translation="MKEHKGNIAIFDTFKTRKNNFTGEAKRQRGIIAHLATEQSPELR
                     TRTSIAHAIAKKHGILWQNIYSGIFRDLDEVLIPSGVVKEAGRLPLRRGPKALQLEGV
                     PFYELTETGLLVSSSIEEIGDKRMKMLETYITSIPGGEQSDNIMREGILLLIRLAPSF
                     ASKII"
BASE COUNT         1002 a          444 c          488 g          847 t
ORIGIN      
        1 ctctaaataa tttatagtat cttttgctaa aaatttgcta ttttctcata tagattcata
       61 tctctaaacg atgaccctga ttatctcctg atgataccta tcctcattaa aaatgtcaac
      121 acatcgttgc agtcgaattt ggtggtggta tactgatagg atttctaacc aaaatatcat
      181 ggaaaaaaga attcctatta acagagtata tatcatatgt catactcctc ggtatcgtaa
      241 atgataacat tgaagatata atgagcgtgg ccatcttcaa agttctaatg cattaatgca
      301 tattgtaacc actactttac tgtatatgta cgctttgaaa agattaatac acactacaat
      361 aaatcacctt tgcaatgcaa actctactgt acaggagata attaaatagt gtgcaaaagc
      421 tctatacaga acaaaagtta gttatgcggc tgtttataat ggataatgag atatgtcaca
      481 ttgctgaata ggtaattctt gaacaaatca cttaacatac tagacgtttg gcatagttac
      541 gaaccatagt taaaattaaa gggcaatata taatatttgc ttaatctaat tatgaaggtc
      601 agttctaggt aaaccaagat gtagacgata agaataccct atctaatgta agacgaatga
      661 cttactctat aactaaattt agtgagtata aatgattatt gaaaggcacg tactaattct
      721 ctacattatg gttgagaata aaaaagtgga ttaaattgat ccaatataca agcaaaaaat
      781 tactaggtat cttgtatgtt gatctgaatc agtaatcaac ctttgataga aggtgcttcc
      841 tttggagata ccctatattc ctattttgtc atggggagta attcatctgt aagaagcatc
      901 tttagtaatt ttttgaatgc tattgtcttc aatatgaatt cttataatac tattttatta
      961 agcgattgtt tcgatggaaa acaaacatta taaaatatac ttcgatatta tcttatcctt
     1021 aatagtttac ttgtatcaca gtttaagcat acgatatacc acgaacgtga acaaatacat
     1081 ttaataactt cgtcatacct gaattttttt tatatgacaa tgccaaaggg attcggttca
     1141 agacctaata atgacggaaa gagaaacttc aatgattggt ggaatactgt accagcagat
     1201 ttaaagcaga aagctcgtca gggagatgag caaaacaagc ctttgttaaa ccaaattaac
     1261 tatgtccttt tacatcttca tctggcgggc aagcatgatg tcaagccatc tcacgacgag
     1321 cttaaggact ggcttcacag cggtcaagta gatgtactta ggatgacagc agcgaaaaaa
     1381 tagaaaatcc taacttatta tttttacttc aaatattttt tatttattaa ggcacttgtt
     1441 actatataca tcgtaaagga attattttat caatttgttt tagccgctat tttgttagga
     1501 ctgcgggtct gaaacatacg atcagcggag tactcttaaa tttattaaac aaatttctta
     1561 agtcaattct tttacaatga attgaggcac aatttaaatc taataactca gttatatcga
     1621 tatatgatga ttagcagctt tctataacaa cagaataatt tgtatgcttt taaattcatt
     1681 gtctgtgtat atatggtaac tatgagcaaa gataataaca acaatgaaaa aacaggacaa
     1741 tcatcaagtc aatgggcaga attgatcgga gaattatttg ataggttaac tggtaaagga
     1801 gcatcggtaa catactcatt tgagaatttc gtaatagaca ttcctagagc agtaggtcca
     1861 agaggtcaag agttaggcag cgctaaatgg accattaacg gcaaactcct aataacagct
     1921 gaaacgcata aatcgactgg agcaggttaa aagaacacta tttcaatagt cgcatgaagc
     1981 tacgatagag tagatacttc aatacataaa ccatcaaaag atgcatggta ctaaaaggtt
     2041 tcaaatgtga acaaacgcaa ttacaataag actgaaagaa aaaataacca ccaataagat
     2101 aagatatata gattgagagc atgtacagag acgctaatac agaaatataa aaacaattgt
     2161 catctttttc tctcgcgaac aaatttcttt atttataatt gtgactagtt ttatagaaat
     2221 accaacaaat taaaatataa ttacaacccc tttagaaaat aaagagggct taggctgaag
     2281 atctattgaa agagcataaa ggtaatatcg cgatatttga taccttcaag actcgcaaga
     2341 ataactttac aggcgaggca aagagacaac gcggaattat agcccatctt gcaacagagc
     2401 aaagtccaga attgcgcact cgaacttcaa ttgctcatgc tatagctaag aaacatggta
     2461 ttttatggca gaatatctat tcaggaattt ttagagatct tgatgaggtg ctaattccct
     2521 caggagttgt gaaagaagca ggaaggctgc ccttaaggcg aggtcctaaa gctcttcaac
     2581 ttgagggtgt tcctttctat gaactgacag agacaggatt gctagtttct tcctcgatag
     2641 aagagattgg tgataagaga atgaaaatgc tggagacgta cattacatct attccgggcg
     2701 gggagcaaag cgacaatata atgcgtgaag gaatattgct attgataaga ttggctccat
     2761 cttttgcatc taaaataata a
//
LOCUS       DATAAS010000296         3191 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4088777, whole genome shotgun sequence.
ACCESSION   DATAAS010000296 DATAAS010000000
VERSION     DATAAS010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3191
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4088777"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..641
                     /locus_tag="VHF08_04815"
     CDS             <1..641
                     /locus_tag="VHF08_04815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF357 domain-containing protein"
                     /protein_id="HEX2068001.1"
                     /translation="ISVYNAVFDNLLSGSHTLILTEYNNNDNKFFFLDPIQVFKMLID
                     IEKDLKYNVFSEETFVIVASRIGTEQKKIISGKIKSLTRMSFEIGPHSIIITGSLHFT
                     ESDAVRTLTVNVDEPTDNSENIQKISVNMIKKYTPKAKQAIKQMKDIIIQENSPSLNK
                     GSIEVLDNAEYYVDDAERFLRQGKHELAVLSIGYAEGLIDALRFQKGINPWP"
     gene            912..2366
                     /gene="gvpD"
                     /locus_tag="VHF08_04820"
     CDS             912..2366
                     /gene="gvpD"
                     /locus_tag="VHF08_04820"
                     /inference="COORDINATES: protein motif:HMM:NF018455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="gas vesicle protein GvpD P-loop
                     domain-containing protein"
                     /protein_id="HEX2068002.1"
                     /translation="MVKPTINESHLKKSAIIPSELMQFVKHDTYSLLIKGYAGTGKTT
                     LSLTILRVLNIKSNFFYISTRISPRQIFIYYPWLSKFVDGSRISKSIENGYDLSSFED
                     ARLDEPESFFERITNQLMDVKAPIIVIDSWDAIASFMDKEARLNNERVLQTWRERAGA
                     KLIFISEDPADRTLDFLVDGIVELKQIFYDNIRIREILLSKLRGVRINRPSYIYTLNN
                     AIFRSCNPFQPTKFIINTDSKILKKRQEKLAPLYNGSHITSGYLKLDAELGGGFQKGS
                     IVLVETDADVNVRTTMSFLAKMMYNFVGTCNPILFGPTEIFEPAIVIAYLKSYLHANP
                     KNELVKILWPMNRVEHSVSEHIIPYQKQNSKRRFEYFQHAVLKVKEENPNKLLLNITG
                     IETNQKVKNFQKKDHIQEILPFIRENVDLSLFVTQRSENTQASLYDVYDIHIRLRIIN
                     GSLFLQLLGTDSPLYEIINDTSSHYPKIELEPMV"
     gene            complement(2368..2664)
                     /locus_tag="VHF08_04825"
     CDS             complement(2368..2664)
                     /locus_tag="VHF08_04825"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX2068003.1"
                     /translation="MKNRSRYEVIAAILRSASKEETRTKIMYKAMLSNDQCKIYLDSL
                     LQSGLIQEVNSGNKMVYRITHKGNKFLSYYDQMKELLPVGIEENIAEEYYHLST"
BASE COUNT         1116 a          509 c          518 g         1048 t
ORIGIN      
        1 ctattagtgt atataatgca gtctttgata atttactctc tggaagtcat actttgatat
       61 tgactgaata caataataat gataataaat tttttttcct agatcccatc caggtattta
      121 aaatgttaat tgatatcgaa aaagatctaa agtataatgt tttttctgaa gaaacatttg
      181 taatagttgc ttcaaggatc ggtaccgagc aaaaaaaaat aatatctggt aaaattaaat
      241 cgctaaccag aatgtctttt gaaattggtc cccattctat aataataact ggttcactcc
      301 attttacaga gtcagatgcc gtacgtactc ttactgttaa tgtagatgaa cccacagata
      361 attcggagaa tattcaaaag atttctgtta atatgattaa aaaatatact ccaaaagcta
      421 agcaggctat aaagcaaatg aaagatatca taattcaaga gaatagtcca tcactaaata
      481 agggatcaat tgaagtactt gataatgcag aatactatgt tgatgatgct gagagatttc
      541 ttagacaagg caaacatgaa ctcgctgttt taagtattgg ttacgcagaa ggattaattg
      601 atgcgcttcg ttttcaaaaa ggaataaatc catggccata atagcaaagt tttgatgcat
      661 ataaagttca acatcgtaat tttgcgaata ggaaacaatt aatacagatc aaaacttaaa
      721 tcccctttac tctgcttcta tactagagag aatatacttg cttttaattt tctgggatta
      781 ttttagtatg ctgcatgcat cgggtcataa aagtaatgca atatatcaat attataatag
      841 atcaagaaac ctaaattata attatcatta tcactatcat tttaagtacc ataataatag
      901 gattggaatc catggtaaaa cccacgataa atgagagtca tcttaagaaa tctgccatta
      961 tcccttctga gctaatgcaa tttgttaaac atgacacata ttcccttctt atcaaaggtt
     1021 atgcaggaac aggcaaaact acactgtcac ttactatttt aagagtatta aatattaaaa
     1081 gtaatttttt ttatatatct actaggattt ctcctagaca aatttttatt tattatccat
     1141 ggctcagcaa atttgtagat ggatccagaa tatcgaagtc tatagaaaac ggttatgact
     1201 tatcaagttt tgaagatgca cgtctagatg aacccgaatc attttttgaa agaattacga
     1261 atcaattaat ggatgttaaa gcgccaataa tcgttattga cagttgggat gcaatagcat
     1321 cttttatgga caaagaagct aggctgaata atgagcgagt gttgcagaca tggcgagaac
     1381 gagcaggagc caaactaata ttcatcagtg aagatccggc tgacagaact cttgattttc
     1441 ttgttgatgg aattgtagaa ctaaaacaga ttttttatga taatattaga ataagggaga
     1501 ttcttctttc aaagttaaga ggagtgagga taaacaggcc atcctatatt tacacgctta
     1561 ataatgccat ttttcgaagt tgtaaccctt tccagccaac aaagtttatt ataaatactg
     1621 attcaaagat cttgaaaaaa agacaagaaa aacttgcgcc actgtacaat ggttcccata
     1681 ttactagcgg atacctgaaa ttagatgcag aacttggagg aggtttccaa aaggggagta
     1741 ttgtattagt agaaactgat gccgatgtaa atgtacgaac tacaatgtca ttcctggcca
     1801 aaatgatgta taactttgtt ggaacatgta atcctatctt atttggacca acagaaatat
     1861 ttgaacctgc catagtgatt gcttacctta aatcatattt acatgcaaac cctaaaaatg
     1921 aacttgtcaa aattctatgg cctatgaata gggttgagca ttctgtttct gagcacataa
     1981 taccatacca aaaacagaat agcaaaagaa gatttgaata ttttcagcat gcagtattga
     2041 aagtaaaaga agagaatcca aacaagcttc tgttaaacat aacgggaata gagacaaacc
     2101 agaaagtcaa aaatttccaa aaaaaagatc atattcaaga gatcctccct tttatcaggg
     2161 agaatgtaga tctatctctt tttgtcaccc aacgctcgga aaatactcaa gcgagtttgt
     2221 atgacgtata cgatatccat ataagattaa gaataataaa tggcagctta tttttacaac
     2281 tattaggcac agattcaccc ctttatgaaa taataaatga tacttcgtct cattatccaa
     2341 aaattgaact ggagcctatg gtttagttta agtactcaaa tgataatatt cttctgcaat
     2401 attttcttct attcctacag gcaataattc tttcatttga tcatagtatg aaaggaactt
     2461 gttaccttta tgtgtaattc gataaaccat tttatttcca ctgttaacct cttggataag
     2521 accactctga agcagtgaat caagataaat tttacactgg tcgttgctta gcatagcttt
     2581 gtacattatt tttgtacgtg tttcttcttt actagctgat cttagaattg ctgcaattac
     2641 ttcataacga ctgcggttct tcatttttac gatacaatta aacctacatt tcatttaatc
     2701 tgagtggaac tatcagatag aaatattgtt cacccacagg tagaaactgc aattatgttt
     2761 tctatcagtt tagaacatat ggtgtattgg acgatgcttg ctaaaatatt aagctactcg
     2821 aattcttatt gtatttgaac tgtaataagg tcttcacttc agaaattaat atttaatcat
     2881 tcaatgaaac atctgtatat ctttgaggca tatcttatat ttaaaattgc aataactata
     2941 ttatatattt attatggtat tgttaatctg cagactttat aacacggaat actttatagt
     3001 ctattgctgc cataagttct tgtgttgcct tcaagaattg gtgttaatgt gatatattca
     3061 tccaatgaat taccagatat acattcttca tacttaattt gcggatttcc aggcagcggt
     3121 tatgtcggaa agatagcggt tgatcattta attcaggagc tgaaagcaat acaccttgca
     3181 gatatatact c
//
LOCUS       DATAAS010000297         5679 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4638793, whole genome shotgun sequence.
ACCESSION   DATAAS010000297 DATAAS010000000
VERSION     DATAAS010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5679)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5679)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5679
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4638793"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2025
                     /locus_tag="VHF08_04830"
     CDS             <1..2025
                     /locus_tag="VHF08_04830"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2068004.1"
                     /translation="TIFVGHNGSGKSSIIDAITFALFGEHTRKTNKNLILRGASSSYV
                     RLIFYVNSREYSAYRQLGSLGQSISAKLDLLSDSNNIVNKPIVAGERKQFGESMSAEV
                     AKTLGIDYKKLKVATIIQQGELNRIIEFHPKDFKELLNGMIGIDRLDLAYQTMHETID
                     GFRERLRTHNNGFDDKQIESIRNTIQLNISELLHAESILKQLESERNRTKAKLHSLEK
                     EIERIEPLILKARELQTMQNSLIEYLNEKKDCLSEDIIKLDRIVKEAQNSIQIVSEKE
                     EIKINLQMVRSEVEDAEIRIINNEGEFGRLKGLLEFARKIEIKDGKCPVCNSTVQTVN
                     KILDTGHIKNEMKKKTEERSKLLTERINSKKEESFLEEKEKRIAAAEKFLALNNICNL
                     QDIIKLEKELFQKKNDLSKLPKTIVGVDEDARIFMIDHFSKSMVENIIKLKYQVKDLR
                     IQDYLDAKLNHTRLSDALLEINMKIGSSQKSIQQATKVIDDSNKILTELDYAAKYITI
                     LEKIRATVFNRDGLVGLSLRSWALKTISFKASEYATMFNIGISRIDLAEKVKDVDIIC
                     YGRHGEIDINSLSGGEKVAVALALRFAISYMMGSGKLDFIILDEPTAHLDTERRKSMV
                     KIISEAFKDGDGPLSQIIIITHDAEIFEDSEVDRIYRFTMSVDGSVVSTE"
     gene            complement(2150..2650)
                     /locus_tag="VHF08_04835"
     CDS             complement(2150..2650)
                     /locus_tag="VHF08_04835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEX2068005.1"
                     /translation="MIDQRYVKSDVRMRLLAEMETQYDNQNEQYFKDLLSHEDSVIRT
                     RVICILADISGVDAVESISRVLESDKNALVRHEAAFSLGQLGYPAATAALSNAVKSDP
                     SYFVRHEAAVALGVIGSEDARETLNEALKDESVEVRESAIIALANLDYVSTIKRNNKF
                     TRMTGG"
     gene            3046..3507
                     /locus_tag="VHF08_04840"
     CDS             3046..3507
                     /locus_tag="VHF08_04840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068006.1"
                     /translation="MRLRYWRLGITDVLEAKYPVEKANHWEIKCMQGEYQHFGVFWYK
                     FGTPYDKEPVHGICFYYNEIPQKTVEELIESLHSKFGGKILYRQTRVFLQGSKEFADP
                     KSIATLANELSLKFNSPVELTIEFEKVTKEEQENNIYNLPSGKILPIVGLD"
     gene            complement(3610..4038)
                     /locus_tag="VHF08_04845"
     CDS             complement(3610..4038)
                     /locus_tag="VHF08_04845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2068007.1"
                     /translation="MSKSRRRNSIPRIMVVDDEKDILSIIKRGLESDNIFKVDTFSNG
                     ESALQAFESHPEYYYDIILTDIRMPKMSGFELYRRIKEKRSSTKIAFITAFEINKDEF
                     RKVIPSIHVIDFISKPVSISNLITKVKSMLDTYPENTATL"
     gene            4321..4899
                     /locus_tag="VHF08_04850"
     CDS             4321..4899
                     /locus_tag="VHF08_04850"
                     /inference="COORDINATES: protein motif:HMM:NF024986.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEX2068008.1"
                     /translation="MSSSYITNGTISSIFSTIYDNAKLIYAMHFEKNVSAVSSQKEWI
                     NLLVDEKISAFNEWRMKNLIIRPDISGKDLSNKDLSGAYLNGVSCIGTNLSHCNLSKV
                     NFVQADLREANLEESNLTDALLMYAEMKDCNLRNASLIRTNLMWANLQNSDLSGCKMS
                     KTVLVEADMKNAKIIDLDRNKVYLKYAKFQDQ"
     gene            5265..5435
                     /locus_tag="VHF08_04855"
     CDS             5265..5435
                     /locus_tag="VHF08_04855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068009.1"
                     /translation="MLPNYGSDTNWYRNFLANQTLKISVSGEEIPARGKPITDSSRVR
                     DVIVNLVPSMAM"
BASE COUNT         2013 a          908 c          986 g         1772 t
ORIGIN      
        1 acgatttttg taggacataa cggctcaggt aaatcgagta taatagatgc aataactttt
       61 gctttgttcg gagagcatac aagaaaaacc aataagaatc ttatactcag aggtgcttcc
      121 tcgtcctatg ttcgtctaat attttatgtt aattcaaggg aatatagtgc ctacaggcag
      181 ttaggatctt taggtcaatc gatatcagca aaattagatc ttctatcaga ctcaaacaat
      241 attgtaaata aacccattgt agccggagaa agaaaacaat ttggagagtc catgagtgca
      301 gaagttgcaa agactcttgg gatagactat aagaaattga aagtagcaac tatcatccag
      361 caaggagaac tcaacagaat aatagagttt catcctaaag atttcaaaga gctcctcaat
      421 ggaatgattg gtatcgatag attggatctt gcttatcaaa ctatgcatga gacaattgat
      481 ggcttcagag aaagattacg tactcataat aatggatttg atgataaaca aattgaatca
      541 atacgcaata caatacaact aaatatttct gaactcttac atgcagaaag cattctaaag
      601 caattagaaa gtgaaagaaa tagaacaaaa gcgaagttgc attcactcga aaaagaaata
      661 gaacgaattg aaccattgat actgaaggca agagaacttc aaacaatgca gaattcactt
      721 attgaatatc tgaatgaaaa aaaagattgt ctttcagagg atattataaa acttgatcgc
      781 atagtaaaag aagctcaaaa ttcgatacaa atagtttcag aaaaggaaga aatcaaaatt
      841 aatcttcaaa tggtaagatc tgaggtggag gatgcagaga tcagaattat aaataatgaa
      901 ggagaatttg gaaggctcaa gggattatta gaatttgcaa gaaaaataga aattaaggat
      961 ggaaaatgtc ctgtctgtaa ttcaacagtt caaacggtta acaagatctt ggatacaggt
     1021 catattaaaa atgaaatgaa aaagaaaact gaagaacgat caaaactatt aacagagaga
     1081 atcaattcaa aaaaagaaga atcttttcta gaagaaaaag aaaagagaat tgcagcagct
     1141 gaaaagtttc ttgctttaaa taatatttgc aaccttcaag atataataaa gttggagaag
     1201 gaactttttc aaaaaaagaa tgatttgtca aaacttccca agactattgt aggagtagat
     1261 gaagatgcta ggatcttcat gattgaccac ttttcaaaat ccatggtcga gaatattata
     1321 aaacttaaat atcaagtaaa ggacttgaga atacaagatt atttagatgc aaagctcaac
     1381 catacccgcc tttccgatgc tttgcttgaa attaatatga aaataggatc atctcaaaaa
     1441 tctattcaac aagcgacaaa agttattgat gactctaaca aaatcttaac agaactggac
     1501 tatgccgcaa aatacatcac tatattggaa aaaattagag caactgtatt taatcgtgat
     1561 ggattggtag gattaagtct tcgttcatgg gctttaaaaa cgatctcatt taaggcttcg
     1621 gaatatgcga ccatgtttaa cataggaatt tcaagaatag atttagcaga gaaagtcaaa
     1681 gatgtagaca ttatctgtta tggaaggcat ggagaaattg acataaattc tctaagcgga
     1741 ggtgaaaaag ttgcagtagc gcttgcacta agatttgcaa tatcatatat gatgggttcg
     1801 ggtaaactcg atttcataat tttagatgaa cctacggctc atctcgacac agaaagacga
     1861 aaatctatgg taaaaattat ctcagaagcc ttcaaggatg gagacggtcc tctttctcaa
     1921 attatcataa tcactcatga tgcagagatc ttcgaggatt ctgaagttga tagaatttat
     1981 cgattcacaa tgagtgtcga tggttcggtt gtctctacag agtagatatt taatcgagag
     2041 agagagagag agtgctattc ttccttcctg ttaacaaata tcagtacaat ccgttaacac
     2101 tcctgaatat attaatgatt aattttttat atactctcta tctattcctt tatccacctg
     2161 tcattctagt gaatttattg tttcttttta tggtggagac ataatcgaga tttgctagtg
     2221 caataattgc tgattctctt acctctacac tttcatcttt caatgcctca ttgagtgttt
     2281 ctcttgcgtc ttcggatcca atcacaccca atgcaactgc tgcttcatgt ctaacaaaat
     2341 aacttggatc tgatttaaca gcattggaaa gagcggccgt agcagcagga tagccaagct
     2401 gacccagaga aaaagctgct tcatgtctta ccaatgcatt cttgtcactc tcaagaactc
     2461 tactaataga ttctactgca tccacacctg aaatatctgc taatatgcat atgacacggg
     2521 ttctaataac actatcttca tgactcaaca aatccttgaa atattgttcg ttttgattat
     2581 cgtattgtgt ttccatttct gctaacagtc tcattctgac atcagatttt acatatcttt
     2641 gatcaatcat atataatgac taatcggacg atctcatatc ataaatattt gtttattttg
     2701 atgacgatag agctattcat aaaagtgcat attagacaat atagtttaga ataagacata
     2761 gttataaatg atacttagta ctggtttgtt taattccaat agattcagga aaaaaaattt
     2821 aatattacga aattgtagtc tggtcatata tagacaaaga ataaaataag acattaataa
     2881 acgagttcaa agaaatatta atccagtatg ttcatgtgtc atcctatttt tatcttttag
     2941 aattagcaca gatttatatt ttctaatgca ttatttagtt ctcctttatt tttagctgcc
     3001 aaactcatca cattattata aagcttgcaa atcatatttg acaatatgcg tttaagatac
     3061 tggcgattag gtattactga cgttttagag gcgaaatatc ctgtcgaaaa ggctaaccac
     3121 tgggaaatca aatgtatgca gggagaatac caacactttg gcgttttctg gtataaattc
     3181 ggtacaccat atgataaaga acctgttcat ggtatttgct tttattataa tgagattcca
     3241 caaaaaactg ttgaagagct tatagaatca ctacattcaa aattcggcgg aaagattctg
     3301 tatagacaaa caagagtttt cttacaaggt tcaaaggaat ttgctgatcc aaaatctata
     3361 gcaacacttg caaatgaatt aagtttaaaa ttcaattcac cagttgaact cactatagag
     3421 tttgaaaaag taacaaagga agaacaggaa aataatattt ataatctgcc ttcaggcaaa
     3481 atactaccta tagtcggact agactgaggt tgataagtag ataaaacgtt catctacctt
     3541 cattaactag gaatatattt caagttgata gaagggttat tcttccttat tttaaggatt
     3601 atcatttggc tatagagtag cagtgttttc tggataagtg tctagcattg atttcacctt
     3661 tgttatcaaa tttgaaatgc taacaggttt gctaataaaa tcaattacat gaatagatgg
     3721 tatcaccttt cggaattcat ccttatttat ctcgaaggct gttataaatg caatttttgt
     3781 cgaggatctc ttctctttta ttctgcggta taattcgaat ccgctcattt taggcattct
     3841 aatatcagtg aggataatat catagtaata ttcaggatga ctttcaaaag cttgcaaagc
     3901 tgattcacca ttagagaaag tgtctacctt aaagatatta tccgattcca aacctctttt
     3961 tattattgat agtatgtcct tctcatcgtc gacaaccata attctaggaa ttgaatttcg
     4021 tcgccgactc ttgctcacaa aatataaaag atcataactt acgtaaaaac gttgcctata
     4081 tacttataga aaattgttct gcaggttaat ttaattaata gctattctga tttacttata
     4141 taagataagc aacgaaatta ttttcatcca ctgccttaat agaaaaatta tatatgtcat
     4201 aattaggttt gaccattcta ttaaaattat taaaacaatt ggatcataag aaaataataa
     4261 caatatttac aaaatatata agggttgttt ttatttgttc catctcatgt agttagttgt
     4321 ttgtcctcta gttatattac taatggtaca attagttcta ttttctctac catatatgat
     4381 aatgcaaaat tgatatatgc gatgcatttt gaaaaaaatg tgtctgctgt ctcgagtcag
     4441 aaagaatgga taaacctcct tgtcgatgaa aaaatctctg cttttaatga gtggaggatg
     4501 aaaaatctca ttattaggcc ggatatcagc ggaaaggatt tgtctaacaa agatctttcg
     4561 ggagcctatc ttaatggtgt ttcctgtatt ggaacaaatt tatctcactg caatttatcc
     4621 aaggttaatt ttgtccaagc ggatcttaga gaggctaatc ttgaggaatc gaatcttaca
     4681 gatgcattac taatgtatgc agaaatgaaa gattgtaatc ttaggaatgc tagcttgatt
     4741 agaacaaatt taatgtgggc taatttgcaa aactctgatt tatcaggctg caaaatgtca
     4801 aagacagtat tagtcgaagc cgacatgaag aatgcgaaaa ttattgatct tgacagaaat
     4861 aaagtttatc taaaatatgc taaatttcaa gatcagtaac tagttaatgc atctaataga
     4921 ataattacag cgattattac agcttgcgct tcaaatagta acattaactt atcaaagact
     4981 gaaaaacagc cattactaag acataatata cataatatta ctacattatg ttattaaccg
     5041 atttaaacac tatatctgga gttatctttc ggtagaatta ttccctatga cttgataatt
     5101 gtacccaagc aaactgtgat cacatcatct acatcaatct tctatctatc tcttggattt
     5161 aattattata aggaataaga ttgacatgga gccagtggtt tgtgaaacaa atttgacatt
     5221 attttgagcc acaatattat gtgcatgaat acaacactct gtatttgctg ccaaattacg
     5281 gttcagatac gaactggtac aggaacttcc tagcaaatca aacgttgaaa atctctgtaa
     5341 gtggcgaaga aatacctgca agaggcaaac caataacaga cagtagtagg gttagggacg
     5401 ttatagtaaa tttggttcca agtatggcga tgtaagaaag tattatccga aacctgatgt
     5461 ggccgttgag gtcccgcttt gacaaatcct gtcgggaact gcctatatca gatggcgacc
     5521 taatcttgaa tataacaaaa aggctagaag cgaaccgcca tgccgtgtta ctgtgatttg
     5581 agagaagcca tatcaatgga gaagcgatac tttacatccg cactggacag tctctcgtaa
     5641 gcctcattga ccttctggat tgggatgact tctacgtcg
//
LOCUS       DATAAS010000298         4286 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_316853, whole genome shotgun sequence.
ACCESSION   DATAAS010000298 DATAAS010000000
VERSION     DATAAS010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4286
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_316853"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..581
                     /locus_tag="VHF08_04860"
     CDS             <1..581
                     /locus_tag="VHF08_04860"
                     /inference="COORDINATES: protein motif:HMM:NF013961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transglutaminase-like domain-containing protein"
                     /protein_id="HEX2068010.1"
                     /translation="NNLVIEHEEPLKPVLQWFKNDFMKWTPKDPKCEKCNSSDLPMRF
                     ELINGNSWKLRKIETYTCNTCGSKQVFPRYGDILKIAETRTGRCSEWSMLFGAILNSL
                     SVQTRIVHDYLDHCWNESLINGKWTHVDSTLEYPISFDHPYYYEKNWGKKYSYVLAFS
                     YNSLEDVTQRYTERHVNYTSYLPKFKKIYASI"
     gene            complement(808..1137)
                     /locus_tag="VHF08_04865"
                     /pseudo
     CDS             complement(808..1137)
                     /locus_tag="VHF08_04865"
                     /inference="COORDINATES: protein motif:HMM:NF019498.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
     gene            complement(1327..1503)
                     /locus_tag="VHF08_04870"
     CDS             complement(1327..1503)
                     /locus_tag="VHF08_04870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068011.1"
                     /translation="MAKGSSQETTLYGLPVANYDSNTTSVIDSSTNTVVGNISNIKVR
                     EFPSDVAVEPEVVV"
     gene            1795..3039
                     /locus_tag="VHF08_04875"
     CDS             1795..3039
                     /locus_tag="VHF08_04875"
                     /inference="COORDINATES: protein motif:HMM:NF012546.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008236 - serine-type peptidase activity
                     [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prolyl oligopeptidase family serine peptidase"
                     /protein_id="HEX2068012.1"
                     /translation="MKLIFNDDGFSFRLLCAIGRTPYGGADIGECLSTAYRIKDGDFE
                     SWYSEWLKTARRLEEIGNQSLENGHIISAKEAYLRASNYYTEAEFFLHINPSDDRIIQ
                     TYTKAVETFRKASNYFSHGFEAIEVPYFDNSDNGNSKTTLPGYLYTVDNKEIQRPILI
                     IVTGFDGIQESLYFSNVLAALSRGYNCLTIEGPGQGRVIRKQKLPFRPDWEKVVTPFI
                     DFLLTNKSNVIDIQHIAIMGISMGGYFAPRVAAYDNRISACIANDGVVDFSKSFTQYL
                     PLIMLKALKEGNKDLINAIIEVITSFSPHATWGYTHGMWVLGAKTPFDLIKKSYSYSL
                     NKEDIHRIKCPTLVLEAEEDMYYKGQAKTLYDELTCQKEYILFTKEEGAEIHCHSASL
                     YLLNQRIFDWLDKAWKSEKEKG"
     gene            complement(3155..4033)
                     /locus_tag="VHF08_04880"
     CDS             complement(3155..4033)
                     /locus_tag="VHF08_04880"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2068013.1"
                     /translation="MNIEIEKAVVNEVELEYSILGKKEEEPIIFIHGGIIADANIPLF
                     SEPSLKNYQLIHYHRRGYAGSSKDKLRVSISEQALDCKNLLDYLEINHVHIVGHSVGG
                     TIALQFTLEYPHYVNTISLLEPALTGYGQDGNYEVIEEFMPMIELYDKGQKQKAIDIF
                     MRTTIGNDYLKLMEERLPVDAYDLAVIDAKTYFHYEIPSMKEWKLPFSLNANIPNIDN
                     NNNSFNLNIERPFSKSVLYARGADSGQRAKEREQIISNLFPNTKILVVENAKHMLQIM
                     NPSKVAEGIVTILENH"
BASE COUNT         1455 a          676 c          707 g         1448 t
ORIGIN      
        1 tgaacaattt agtaatagag catgaagaac cactgaaacc agttcttcaa tggttcaaga
       61 acgactttat gaaatggaca cctaaagacc caaaatgtga aaaatgcaat agctcggatc
      121 tgcccatgag gtttgaattg attaatggta attcatggaa gttgcgaaag atagagactt
      181 atacatgtaa tacttgtggt tctaagcaag tttttcctag atatggtgat attctgaaga
      241 tcgcagaaac aagaactgga agatgcagtg aatggtctat gctctttggt gctattttaa
      301 actcattatc tgttcaaact cggatagttc atgattacct tgatcattgc tggaatgaat
      361 cactaataaa tggaaagtgg acacatgttg attctacttt agaatatcca atctcttttg
      421 atcatcctta ttattatgag aaaaactggg ggaaaaaata cagctatgtg ctcgcatttt
      481 cctataatag tttagaggac gttactcaaa gatatacgga aaggcatgta aattatactt
      541 cctacttacc taaattcaag aagatttatg ccagtatttg acataaatga aaagtcattc
      601 acatatatgg atgcggataa ataattatgg caatagcagc aagacactca tcggtagtaa
      661 aagtgaaagt ataaaaacaa gagtatgtca cgatacagat tagatgctat aataaactat
      721 acggaaaata tagcttcaac tgcattttaa gagatttgta ttattattgc ttccagattt
      781 tctgaataat ttagaaatat ttcaatacta tggtcttatt tccatgccat attcagatgt
      841 taatctaacg agcttttgtt tttgttcttt attaaatggt ggagggggct ttacactgtt
      901 gttagaaatt tccaagccta catcaacaaa aagttgctcc attccgacaa aggatagtac
      961 gattatcagt gttgcagtct cactagtttc atttttgaaa ctatgtaaaa catttggtgg
     1021 gatattaaca aatgttccag gtttggcttc aattctttgc ccgtccacat taaatattat
     1081 ttgtccttca attatgtaaa acccttcatg ttcacgtgtt tgaatatgtg gaatcggccc
     1141 tccacctgga aaaccttagc ttcaataaaa ctgtacgttc cagctgtgtc ttccttgaat
     1201 gcaagaattg tattaatgtc gccagctaca acgagatatg ttttactttg ttaggttcaa
     1261 ggattttact tcttttctgt tttgcatttt aaaattcgca aggctcctga tagtataaag
     1321 ttcttcttac actactactt ctggctctac agccacatca gatggaaatt ctcttacttt
     1381 gatattactg atattaccta ccactgtatt agttgagcta tctatcaccg aggtagtatt
     1441 agaatcatag ttagccacag gtaaaccata caaggtagtt tcttgtgagg atccttttgc
     1501 caatataata gatatctata ctcccggcta tgagtatagt tggagatcag aaggttatca
     1561 gcggtaaata actttttcat ttaaggttat tagtagataa attcttttga tagatattag
     1621 tattcaattg aatttcatct gcaacactct tgggtccact ttttttgaac tattttcatt
     1681 tatttctaaa tcattttgaa attataaaag atagtgattc agagatacag attagcaatt
     1741 tctataaatt cagaaagata aaacttaaaa taaaaaagca aggaacaaaa aacattgaag
     1801 cttatattca atgatgatgg attttctttt aggttattat gtgcaatagg taggactcct
     1861 tatggaggag cagatattgg agaatgtctt tcaactgctt atagaataaa agatggcgat
     1921 tttgaaagct ggtatagtga atggctaaaa actgcaagaa ggttagaaga aattggaaac
     1981 caatctcttg aaaatggaca tataattagc gcaaaagaag cttatctaag agcttcaaat
     2041 tattatacag aagcagaatt ttttttacac ataaacccat cagatgatag aataattcaa
     2101 acttatacta aagcagtaga gacatttaga aaggcttcaa attacttttc ccatggattt
     2161 gaagcaattg aagttccata ttttgacaac tccgataatg ggaattcaaa gactacactt
     2221 cccggttacc tatatactgt tgataataaa gagattcaaa gaccaatact aataatcgtt
     2281 acaggatttg atggaattca ggaaagtctt tatttttcaa atgttctagc agcactaagc
     2341 agaggttaca attgcttaac cattgaaggg cccggccaag gcagagtaat acgcaaacaa
     2401 aaactgccat ttagaccaga ttgggaaaag gtagtaacac catttataga ttttttgttg
     2461 acaaataaga gtaatgtgat tgatattcaa cacattgcga taatgggtat aagcatggga
     2521 ggttattttg ccccaagagt tgcagcatat gataaccgta tatctgcctg tatagcaaat
     2581 gatggggtag ttgatttttc taaatctttt acacaatact tgcctcttat aatgctcaaa
     2641 gcattaaaag agggtaacaa agatttgatt aatgcaataa ttgaagtaat tacttcattt
     2701 agtcctcatg caacatgggg atatactcat ggaatgtggg tattaggtgc taagactcct
     2761 tttgatttaa taaagaaaag ctattcttat tccttgaata aagaagatat ccatagaata
     2821 aaatgtccga cattagttct tgaagcggaa gaagatatgt actataaagg tcaggcaaag
     2881 acattatatg atgaattaac atgtcaaaaa gaatacattc tatttactaa agaagaaggt
     2941 gcagaaattc attgtcactc cgcatcactt tatcttttaa accaacgaat atttgattgg
     3001 ttagacaaag cctggaaaag cgaaaaggag aaaggttagt atattatggt ttgccaaata
     3061 aataaagcaa tattcctttt attatctgca ataatatgct tcatttacca acaagattca
     3121 aattatctat tatagagaat attcatccaa ctcttcagtg gttctctaaa atggtgacaa
     3181 taccttctgc aacttttgaa ggattcatta tctgtagcat atgttttgca ttttctacaa
     3241 ctaaaatctt tgtatttgga aatagatttg atataatttg ttctctttct tttgctcttt
     3301 gtccactgtc tgcccctctt gcataaagca ctgattttga aaatggtcgc tctatattta
     3361 gattaaaact attattattg ttgtcgatat taggaatatt agcatttaat gagaatggca
     3421 atttccattc tttcatagaa ggaatttcat aatgaaagta agttttagca tctattactg
     3481 ccaagtcata tgcatcaacc ggaagacgct cctccattaa tttaagataa tcatttccta
     3541 ttgtagttct cataaaaata tcaattgcct tttgcttttg tcctttatca tacaattcta
     3601 tcattggcat gaattcttct attacttcat agttaccatc ttggccatac cctgtcaatg
     3661 caggttctaa aagagaaatc gtattcacat aatgaggata ttctaatgta aattgcaaag
     3721 ctatagtacc acctacagaa tgtcctacta tatgcacatg gttaatttct aaataatcta
     3781 aaagattctt acaatctaat gcctgctcag atatactaac cctgagctta tccttactac
     3841 ttccagcata gccccttcta tgatagtgta taagttgata atttttcaat gagggctctg
     3901 aaaataatgg aatattggcg tcagcaataa tccctccatg tataaatata attggctctt
     3961 cttctttttt tcctaaaata gaatattcca attctacttc atttactaca gctttttcta
     4021 tttctatatt catagaacca ttagatggtg tacgaaacta tttcaaatat ttttaatttg
     4081 caaaagaaag tttagaaagt atcttttgga aattaaattg tgtaccttta gatatactta
     4141 agaaaaagga taattcaaag aagaagaaga agaagaaaaa tgttgcgaaa gtagaagaat
     4201 ttataacaat ttattcgagc atataaaaag taaatcttca attattctac ctttactttt
     4261 tgtcattttc tctgtatatt ttgacc
//
LOCUS       DATAAS010000299         3245 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3553585, whole genome shotgun sequence.
ACCESSION   DATAAS010000299 DATAAS010000000
VERSION     DATAAS010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3245
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3553585"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(224..880)
                     /gene="hsp20"
                     /locus_tag="VHF08_04885"
     CDS             complement(224..880)
                     /gene="hsp20"
                     /locus_tag="VHF08_04885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp20"
                     /protein_id="HEX2068014.1"
                     /translation="MSFWGIEPEDWFRRFFGGREGNPRTGGWRRDVFREFEDMRREME
                     RMFEEEFRDIQSTAPKELVREYETPEGGKVKEIGPLVYGYSMTIGPDGKPKVREFGNV
                     RSAGGLGGGVSTPGRTRALLRSEREPLADVVTSDKEVKVVVEMPGIDKKDIKVNIYDN
                     SVEIFTTDTSQRKYRRVVELPEETDLETARSTYRNGILEITFSKRESPKPKGKQINIE
                     "
     gene            complement(1812..2585)
                     /locus_tag="VHF08_04890"
     CDS             complement(1812..2585)
                     /locus_tag="VHF08_04890"
                     /inference="COORDINATES: protein motif:HMM:NF012774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thermonuclease family protein"
                     /protein_id="HEX2068015.1"
                     /translation="MYNNVFVCNVSINLLTLLLLVASSLSIILLSIEPHEAAFARCPN
                     GYHKSPSGDCEKVVDLPDNLPICPDGSHRSPDGDCEKVTVSPSSSAGDSSNSDYNIDL
                     KNIEDSGINNNSDGENYNANVLPSTECQGQADCFKGKVTGIVDGDTLDINNIRVRLTL
                     VNTPERGEAGYTEAREFVKSVCRIGTDVLVDEDDGQKEGSYDRLIGLVYCVGDDNSSN
                     KKGALLNEVLLQRGYAVVFEEFCDKSEFSNAGWVQEYGC"
     gene            complement(2732..2980)
                     /locus_tag="VHF08_04895"
     CDS             complement(2732..2980)
                     /locus_tag="VHF08_04895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068016.1"
                     /translation="MHMRKILISAPELIINKLEEKLRHKYDVQIKTIPNDTNAVCEIK
                     AKVGRDMITICRFACNENLKDILTMFEVNYELKTRSRK"
BASE COUNT         1014 a          613 c          412 g         1206 t
ORIGIN      
        1 tattggaaag aatgggcaac aactaatcca acatgatata tcattaattt tgtatagctt
       61 tactattctt ctaattatat atttgatttc tctgattgtt agttagttat tgaataaata
      121 ataatttaag cgaattataa acccaatttc gtctatatca aattgctctt gtagtaaaat
      181 atgtgttatc ttatttacaa acaaaaagaa gaagagtatt tatttattct atgtttattt
      241 gcttaccttt tggtttaggt gattcccttt tgctgaaggt tatttcaagt attccatttc
      301 tataagtaga tctagctgtt tcaagatctg tttcttctgg taactcaact actcgcctat
      361 actttctctg tgatgtgtca gtagtaaata tctcaactga attatcgtaa atgtttactt
      421 taatatcctt cttatcaata cctggcattt ccaccacaac tttaacttcc ttatcagatg
      481 tgactacatc tgccaatggt tctctttcag atcttagcag agctctagtt cttccaggag
      541 tgctaacacc accaccaaga ccgccggctg atctaacatt tccaaattct cttacttttg
      601 gcttaccgtc cggtccaata gtcattgaat aaccatatac taatggtcct atttctttta
      661 ccttgccacc ttcaggcgtt tcatattccc ttactaattc ttttggcgcc gttgattgga
      721 tatctctgaa ctcttcctca aacatccttt ccatttctct tctcatatct tcaaattctc
      781 taaacacatc tctacgccat cctcctgttc ttggattgcc ttctctacca ccaaagaatc
      841 tcctaaacca atcttctggt tcaatacccc aaaagctcat ttcataaaca cctgatagga
      901 tctgtggctt gtaaattact taattatttg atataaatct cctatgttgt ttattcattt
      961 tattttgatt tttttgctat cgctattcat tactatctaa aataactatg actcactaga
     1021 aagcaatcta agaaataact gtatatatag aataagataa ttaggtatac aaatgggtta
     1081 tgcaatatga tgataactca ggtcgtagta ttatatcatg aattatgtta aatcgcctaa
     1141 ggttaaaaaa tgatgatatt ataataaaaa ttcattttga aatatcgaat tttacacaat
     1201 ttttcaacct tatatatggt aaatattctg tcagtacatt ataatcatta atctacaatc
     1261 aggaataatt acaagatcgt ggacaatcta tttatctgca ttgcataaaa ctccatagaa
     1321 cagtttctct ggagtgttaa tagtcaatct ctatggccaa gtcatgccaa taatagcatt
     1381 ctgacttggg ggtttatgat tcttaaaata tttgaaatcc aactattagt tctactacta
     1441 tagtatgaga gcagtatata gaaggttatt ttctctatta atttactact tgtgtgcacg
     1501 atgtctcaaa gatttcttat agttactatt agatttgtca aaaccctctt atttttcaat
     1561 tccatctatt ttacttctca ttgatatttg ttccatatta gattcaagtc ttcttttctc
     1621 atttttaaat tagttatata taagtgcatc tctaatgtag atattagaaa ttcaagaatg
     1681 acaattccca caatcatgtg tatgatgtga ctatttttct accatctgtt actggatata
     1741 catcgcgata tcatacagct gtaactatag ctataaccta tagattaacg ttaaatttaa
     1801 agtataatta attagcagcc gtactcttga acccaacctg cattagaaaa ttcactttta
     1861 tcacagaatt cttcaaatac aactgcatat cctctttgaa gtaaaacctc atttaataaa
     1921 gctcccttct tgttactaga attatcgtca cccacacaat atactaagcc tattaatctg
     1981 tcatagcttc cttctttctg tccatcatct tcatctacta aaacatctgt tcctattcta
     2041 cacactgatt taacaaactc tcttgcttct gtatagccag cttctcccct ttctggagta
     2101 ttgactaatg tcaagcgtac tctaatatta ttaatatcta gtgtatcacc atctactata
     2161 cctgtaactt tacctttgaa acagtcagct tgtccttgac attcagttga tggaagaaca
     2221 tttgcattat aattctcacc atcgctatta ttattgatgc cgctgtcctc aatatttttt
     2281 aaatctatat tataatcact attgctactg tctcctgccg atgatgatgg tgacactgta
     2341 actttttcac aatcgccatc aggacttcga tgagaaccgt caggacatat tggtaagtta
     2401 tctggtaagt caactacctt ttcacaatca ccgcttggac ttttatgata accattagga
     2461 catcttgcaa atgctgcttc atgaggttct attgataata atattattga taaagaagag
     2521 gctacaagaa gcagtaatgt taaaagatta attgatacat tgcatacgaa tacattatta
     2581 tacatctaac gtttagattt tagtttatta gctaatgaag attttaaaag aaaaatatgt
     2641 aatggcttta taaatttagt agctgcgaaa gatgaggtat gaaaatgaca gaccagtaca
     2701 tagtatatac ctacaaacct tcatcaatgg attactttct cgatctagtc tttaattcat
     2761 aatttacttc aaacattgtc aagatatctt ttaagttttc attacaggca aaccgacaaa
     2821 ttgtaatcat gtctcttcct acctttgcct ttatctcaca gacagcatta gtatcgttag
     2881 gaattgtttt aatttgaacg tcatatttgt gtcttaactt ttcttctaat ttattgataa
     2941 taagttctgg tgcagatatt aagatctttc gcatatgcat ccacagtact gtaatttagt
     3001 atgacataaa tataaaaaat tctatgcatc taatagaaat atacatatat ttatgaaagg
     3061 aatgttacaa taatccaatt aaaacagaac tagataggta aggcctaagt tttagcaatc
     3121 ccacttctct cacctattgt aacaaaacct tcattcaact tttgccttaa tatatcaagt
     3181 ctagcaacta caccaataag tttgccatct tcttgtacta ctggtactaa tacaatttct
     3241 ttttc
//
LOCUS       DATAAS010000300         3005 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2490595, whole genome shotgun sequence.
ACCESSION   DATAAS010000300 DATAAS010000000
VERSION     DATAAS010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3005)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3005)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3005
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2490595"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(544..840)
                     /locus_tag="VHF08_04900"
     CDS             complement(544..840)
                     /locus_tag="VHF08_04900"
                     /inference="COORDINATES: protein motif:HMM:NF013422.4"
                     /note="in yeast this protein is involved in start site
                     selection during the initiation of translation; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HEX2068017.1"
                     /translation="MSEDYDTNSMDNVLRELDREKTNIVISKEIRRYKKSTTVVRGLQ
                     DRTDTESITRELKTKIGTGGTYKEGQIVLQGDHRESVKNLLISKGFSEKSIEIM"
     gene            complement(1295..1528)
                     /locus_tag="VHF08_04905"
     CDS             complement(1295..1528)
                     /locus_tag="VHF08_04905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068018.1"
                     /translation="MQNNKCDKCRLTIHPDFIGYHKCGYANCPICKNAITNSQYWFHI
                     RSHPGHENDSPPRPRETTFNSRQGTEMRHSTQR"
     gene            complement(2305..2664)
                     /locus_tag="VHF08_04910"
     CDS             complement(2305..2664)
                     /locus_tag="VHF08_04910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068019.1"
                     /translation="MIAGRAQLSVVISVSRFHFIPLLQSVISHSISGMLFAISRSLTT
                     YGIIIRVPLDNLYNFRNSAISSYPNAVATLAPNALKFSCPYHLRFNAIDTSIGVFLLK
                     KGCRFGLMLGTLLLFDV"
     gene            complement(2671..2808)
                     /locus_tag="VHF08_04915"
     CDS             complement(2671..2808)
                     /locus_tag="VHF08_04915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068020.1"
                     /translation="MLNAIKTQKIDNYILKDDVFAAISHFGNPIILTAAGRCDGEITC
                     S"
BASE COUNT         1039 a          485 c          468 g         1013 t
ORIGIN      
        1 gcaaaatctg tcactgtaag atagaaattc taatttcaaa tttttattca aaactataac
       61 acatcgatta tctttttaaa tttagattta aaaagaataa tatgaataat attgaactat
      121 gacagtctaa agacaaaaaa ttctaaagta ttattatcta atccacatta tataagacta
      181 cagtaagcat taagatatta gtaatactga cgtctgcaat ttgcactata tccacttgta
      241 ctagttgagt acagttgtaa actagtggca caattaagac caaagtgaaa tcaaacaaag
      301 cttatgtatt gctgattaac ttggtcaaga gtcaactaca taaaagtttt aaactaagct
      361 agaaagggaa acacatagaa tcatcaagat atctagctgt ttgatgggtc tatggtatct
      421 gtagagatgt cattactttt taatattcta atcacgtaat cctcgcttgg taaagtatta
      481 acaatatata aaatattata acttatacaa tttgaaccga caaatcgatt gcataatatt
      541 ttgttacatt atttcgattg atttctcact aaatcctttg gatataagca gattcttaac
      601 tgactctcta tgatcacctt gcaaaacaat ttgtccttcc ttatatgtcc ctcctgttcc
      661 tatcttcgtc tttagctccc ttgttattga ctctgtatct gttctatctt gcaaaccacg
      721 cactactgta gttgatttct tgtaccttct aatttcttta gaaatgacta tgttagtttt
      781 ctctctatct agttctcgca gaacgttgtc cattgagttt gtatcataat cttctgacac
      841 tgataatctt atgatttttt gccttaaaaa ggattagtct aacaaattat gaaataatcc
      901 aaatacagta tgacatatag ttttactgaa ggcaagtgca gagctataat aactcagaca
      961 tagccaaaat cttgcagata agccatatta gactaagtga cgttcaatac ttaaaagaac
     1021 tcgcaagagg ctacatcaaa tattctcatc atagataaac tcttagttag gttactttca
     1081 agatccgcta gctaatatga cgatccctcg agttaaatcc agccttattc caaatagctt
     1141 tcgataaact tttgataagc tttcttgaaa agataactga aatggcgatt agtaagcagg
     1201 tgttagatca tctgcttttt tgtgtatata tatatataat atcggtcatc gtttttacgt
     1261 atctttatga tatagaataa atagaaaatt atgatcaacg ttgagtcgag tgtcgcattt
     1321 ctgtaccttg tcttgaatta aaggttgtct ctctcggtcg aggtgggcta tcattttcat
     1381 gtcctggatg tgatctgatg tggaaccagt attgtgaatt tgtgattgca tttttacaga
     1441 ttggacagtt tgcatatcca cacttatgat atcctataaa gtcgggatga attgttaatc
     1501 tgcatttatc acatttatta ttttgcaaaa tatgttcagt tttgtttaac agcaagtata
     1561 ataaggatgt attggctagc tcaagtcttc taggtgagta tttgttcata gtactagtcc
     1621 agggttatat tgttcctttg ttttctctgt aaggtagaga acgtttggct agctttacca
     1681 atttatgccc taaacatcta taataatatc aaggatgttc aataaaaaat gaagacgagt
     1741 aaaaaaataa aatgccactg cttatgttaa aatatattac ttgaagtctt ccggtctcta
     1801 tattgccgaa gaaaataata gcgatgattt caaattaact gctacaagaa atgacgcttg
     1861 acacatttgc tctcggacgc aagaactgat gtttatatac tgacaaattg atagacataa
     1921 attacatact atgaatggag tgtcagattc atgccaatat ggaagttcat tatagtatga
     1981 tatttaacga ttcaatagcg atatgtagat agtaacacac taacttttgg taccggctaa
     2041 ttaaatccaa aaatatactt aaccgtatat atacagttat ttaaattata tacgcgaata
     2101 aagtgatata tatataaaat tcaaatacca cacattggta acacttggaa gaaggcgata
     2161 acaaggcaac aaaataggca acaagtagta acgacagctt taagattttg ttttatataa
     2221 ttagacggat tagtaaaaaa atctaagtaa taacaagaca agaaagaaaa agacttgttt
     2281 tatagcttta caattaaggt aaaatcaaac atcaaacagc aaaagagtcc ctaacatcag
     2341 tccaaaccta caaccctttt ttaatagaaa cactccaata gatgtatcga ttgcattaaa
     2401 tctaagatgg tatgggcaac taaattttag agcattagga gctaaagtgg ctacagcgtt
     2461 tggatacgat gatattgcac tatttctgaa attatataga ttatctaagg gtacgcgtat
     2521 gattatgcca tatgtcgtta agcttcttga aattgcaaat aacatgccag aaattgaatg
     2581 ggatataacg gactgcaaaa gaggtataaa atgaaatcta gaaacagaaa ttaccacaga
     2641 caactgtgct cttccagcaa tcataaccct tcaactacaa gttatttcgc catcacatct
     2701 accagctgct gtaagaataa ttggattgcc aaaatgtgat atcgccgcga aaacatcatc
     2761 ttttaatata taattatcta tcttttgtgt tttaattgca ttcagcatat accttttttt
     2821 tgatcatgaa gattttctgt ctgccatagt gctaatgcat ttatatttta catcaatatg
     2881 gctgtgtcca agacttccta aagtagtagt atagtacaat tagaaaaact ctcataataa
     2941 tatccggtca ttattttttg ttagtaatat tccaagaatc atggcaaaat cgtatggttg
     3001 ctaac
//
LOCUS       DATAAS010000301         1508 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1949391, whole genome shotgun sequence.
ACCESSION   DATAAS010000301 DATAAS010000000
VERSION     DATAAS010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1508)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1508)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1508
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1949391"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(733..1005)
                     /locus_tag="VHF08_04920"
     CDS             complement(733..1005)
                     /locus_tag="VHF08_04920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068021.1"
                     /translation="MSEERKIIKFHGAEVKNVIILYSIRPNSKPVTIVIEQFDALKNE
                     EHCETINIQVVADFVTITFYKQESSNSILRRELIPTHAVEHIWIED"
BASE COUNT          487 a          235 c          194 g          592 t
ORIGIN      
        1 cttccttatg caggtagtgg gtataatatc tgaaacatgt acaatggtat cgagtctcct
       61 tctatcttca tatctagact tgagattttt ctgaagtaaa tctgtgaact tgggatttat
      121 tcgtatagtt attggcattt caatcctctt cttttattct aataattctg tccaatatag
      181 ttttcaaata agaatatgtt caacatatat atattgacag cttgcttatg tacttctagt
      241 aacgacagaa tcattaatgc taatctattg cctcaattcc taaggaaaca gtcagataat
      301 gcgcacctgt aatcagtcac aaatattcta tataaaaata atttaataaa taactttata
      361 aaattaaaaa attattgata caataatcct ttatggattt gtataacaaa ttacatgatg
      421 taccattagc tttccaaaat gatgaagctt attagcatct actaactcct gtatctctct
      481 ttacaagatg tcaaatttat acaagtgatt gtaagtgata ctaatatcac ctttatatat
      541 tctaacttag ttgttttctc aaaccgggta aatagtaaca attcaattag taattattac
      601 tagcatttca tttatttgct ccatatgaaa ttctgatttc agaatgcttt tagattagaa
      661 ttaactaccc acttgttcgt ctacttctac tttacatttg acaaaactac caatccaaaa
      721 tgagttagtt tattaatctt ctatccaaat gtgttctaca gcgtgtgtag gaatcaattc
      781 tctacgtaga atcgaattgg agctttcttg tttataaaat gtaattgtaa caaaatcagc
      841 tactacttga atgtttatgg tttcacaatg ttcttcattt tttaatgcgt cgaattgttc
      901 gattactatt gtgacaggtt ttgagtttgg tcttattgaa taaaggataa tcacattttt
      961 tacttccgca ccatgaaatt tgattatttt tctctcctct gacattggtt ctttttaaat
     1021 gtattacatc gataataata ttttctatta ttaatattaa tgtattaata cagcaagtac
     1081 taccatgaat tcaagcaaga cagaggttct attagaatat attataagaa taagagctaa
     1141 tgaatatgta aagaatactc acagctaaaa gctttcatcg acccattctg gtcataccag
     1201 gaatatagta atacatatat ttgttttgaa agttgacttt gttaataaag ttccacaatt
     1261 aacttacgtc gtagtcttta ggttttttct acttctatag tcaaatcatc atcacctttc
     1321 gattcaacta ctaatgtgtt ttactcattg acttattact ctaatgtctg ctgtttctat
     1381 gaaatatatt tgcagttaca ttacgttgga atcttatatc tttattctaa actgctacat
     1441 caggagtttt tattatatta gctatatcaa ttgaattatt atgagctgat gttattctta
     1501 tataatta
//
LOCUS       DATAAS010000302         3303 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_881010, whole genome shotgun sequence.
ACCESSION   DATAAS010000302 DATAAS010000000
VERSION     DATAAS010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3303)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3303)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3303
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_881010"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1070..1525
                     /locus_tag="VHF08_04925"
     CDS             1070..1525
                     /locus_tag="VHF08_04925"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2068022.1"
                     /translation="MASDKQCFQNSILVVDDEFDIVTLIKTSLQNHGFNTLGFTDPLI
                     ALEHFQNNSKSFAMVIADIRMPLMNGYELIRKIKAIHPTIKTILISAFEINKNEFSKV
                     MPSVKIDGFISKPISMKELVSIVENILKKEKRKDKNVRKNTSASLRKSL"
     gene            1919..2167
                     /locus_tag="VHF08_04930"
     CDS             1919..2167
                     /locus_tag="VHF08_04930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068023.1"
                     /translation="MNESKNRTDAITKYGRRCINSKHSNMIKHIQQPEIKQTHIISRR
                     TVVAEEQEKTNNLEKCIIKLQFMVIVLILCNIMDKKNI"
     gene            2206..2343
                     /locus_tag="VHF08_04935"
     CDS             2206..2343
                     /locus_tag="VHF08_04935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="C2H2-type zinc finger protein"
                     /protein_id="HEX2068024.1"
                     /translation="MEEGGGREDKDQNHIVCDYCGKEFDNSDKFKIHIDQVHSSSDLF
                     H"
BASE COUNT         1198 a          505 c          501 g         1099 t
ORIGIN      
        1 taataatgaa tttccatgca aactaaaaaa agaaacagca tgacaaaaat ataaataaaa
       61 attaaaataa aaaccgttta atctctgatt gtcttactat tatcgattct agagccagtg
      121 ccttttgaca aaaataatat agttatttat cgaaattaag aatttgtgat tcttcttgct
      181 ctgctgcgtc aattaatata tctagaataa ttaatgtcat taatattatt cttcgaaatc
      241 tagaaccgag aaagcatcag ccaacgcgga ataactaaca aagagtaaga taaaaactat
      301 gaaagaattt agatttacta atgcaaatag tagagcataa ccagttacaa caattcttcg
      361 tctattattt cgattttatc aacgtattgt tggcagtggc atcctatgat cagacatttt
      421 ccaactagca tcaaggattt catagtatca gaattatttt taaattcatg ggctaaatga
      481 gtatgatggc acttagcaca attcattcac tttgttatgt ttatcagcta tatatattat
      541 cttggtaata atcattaagg aaatcttagt cagaatgaaa taatagaagt aatattagaa
      601 aagacagtca tacacagagg cggagtgtaa gcatcttgtg actacagctt ccgcacctaa
      661 gatgacactg ttatggatac aattacttgt aatactaatg gagcattagt atttagaaag
      721 acaatgcgac tgatgatgtg gatgaagtat aagcatcctt gtagctgata gcaaaaaatg
      781 tttaatttct ctgttacatt ttaattctcc gttagacaca tacatattga aatcactatt
      841 gacaacatga gtatcactac agcttatttt cctactacaa acacgataat gctgctcaca
      901 ttccagaata aaaatgattt tttagcgata catgcctata tacagttata gattagcaat
      961 aaatctcaga ggtcataatc tttgccagcc tgaacctagt tagatatttt tggtgatatt
     1021 tactattctt tatatatttg acaaacttgt aaatgaagtc tgaaccatta tggcgtctga
     1081 caagcaatgc tttcaaaact caatattggt agtagacgat gaatttgaca ttgttactct
     1141 tattaaaaca tctctgcaaa atcatggctt caataccttg ggctttacag accctttaat
     1201 agcattagaa cattttcaaa ataattctaa aagttttgct atggttatag ccgatattag
     1261 gatgccgtta atgaatggct atgaactcat aaggaagatc aaagcgatac atccaacaat
     1321 taaaactatt ttaatatcag catttgaaat caataaaaat gagttttcta aagttatgcc
     1381 atctgttaag atagatggtt ttatatcaaa acccatatca atgaaagagt tagtaagtat
     1441 agttgaaaac atcctaaaaa aggagaaaag aaaggacaaa aatgttagaa aaaatacctc
     1501 tgcttcgtta aggaaaagtc tataacctat ttttgcagta tgataatact cttgaaaaga
     1561 ccagcacgta atctcgagta gaaacgttca tgactttgag agctccagat ataaactgaa
     1621 actgatagag ctctctttta agggcgcaat tatatgctca cggtatatca gataagggta
     1681 tatgaaaaat cagaccaact tgtattattc tctttgatgt ataaatgata taatctcaga
     1741 aattatagtc aaaaagcaag cagttcacac ctgaacacac agattcttgc tacaacaagt
     1801 aaagtaacta agaaggtatc tgatgcatta ctgcaagggc ttcttattta ttatttgcac
     1861 aaatggtctt atgatctatg atcaatttgt aatattaaaa tgaaattatt aacagattat
     1921 gaacgagtca aaaaacagaa ccgatgcaat aaccaaatat ggaagaagat gcatcaattc
     1981 caaacattcg aatatgatta aacatataca acagccagaa atcaagcaga cgcacattat
     2041 tagtcgaagg acagtggtag cagaggagca ggagaagaca aacaatttag aaaaatgtat
     2101 tataaaactt caatttatgg tgattgttct aatattatgt aatatcatgg ataaaaaaaa
     2161 tatataatta gtatcctttt tattctatta agttattctt aaaatgtgga agaaggagga
     2221 ggaagagaag acaaggatca aaatcacata gtatgtgact attgtggtaa agagtttgat
     2281 aatagtgata aatttaagat acatatagat caggtgcaca gcagcagtga tttatttcac
     2341 taaattaaag taattttgat atatcctaat tataatgaaa gattgttaat cttagatgac
     2401 tgtttggtcc agagtttaat gttattatga tgagtatttt ctaaagaatc cctcgattag
     2461 ctgacttgca gatttccata catacaaaag atattgtctt tctattctct atcgtctatt
     2521 aatttgctac aaaaagagta tttcatagtc tcatcttcca tatctcatct agctgttaca
     2581 tgcatatatc atcaccacaa aactagtgat cttgtaccct tttacttgat ctctttatac
     2641 attttcttgt tgtaatatcc tagcttatgc aacctatgtt tctaacacta tagatagttt
     2701 attttgttag tgtcgtcaag atttatagag ctggtagtcg ctcttgctct attaatctaa
     2761 aatgtagatt attactagat aataaatacg agaactaaag gttttctcat tactttgata
     2821 acaagaaata gttcatggca acataataag tctgtttatt ttatctaatg cttttattct
     2881 tctattatat gctaaaggtc aagattgacc agcgttcaga gagaatgtta agaacataaa
     2941 gattgaaagc agaagtcttt tctagaattg acgttattta attttttata tacttataac
     3001 ccaaaaataa ctcctcggtt tctttctata tacataatca tagcaaatct tacgatcatc
     3061 gtcttatacc tgtcattcat gtgttatgct ctgttgtgtg tatctggaga ataaagttcc
     3121 atttttttcc ttgtttgcct agacttaatc ctcttcaata cgatcataga tatcaaaatt
     3181 gcatcaagca atatcattca ttttaatatc gacattctca cataacgtaa agtatgtctt
     3241 ctttttgtcg acataaaaac aattagaaca gcaaaacaaa ttcatattag tttctgttaa
     3301 gct
//
LOCUS       DATAAS010000303         3672 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2496984, whole genome shotgun sequence.
ACCESSION   DATAAS010000303 DATAAS010000000
VERSION     DATAAS010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3672)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3672)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3672
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2496984"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            150..536
                     /locus_tag="VHF08_04940"
     CDS             150..536
                     /locus_tag="VHF08_04940"
                     /inference="COORDINATES: protein motif:HMM:NF024864.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HEX2068025.1"
                     /translation="MLNNIIAIIVISFVVVGTLWGVGNIINRPEESSIKNISGVLLIA
                     QNNAFNKTNPDIYAAVNVPKKLVVLNKDFVRHDLVVDELKINTAYLSSEQDFTTAIAS
                     KEPGTFEYYCSLHPTTMQGKIIVNEK"
     gene            1068..1502
                     /locus_tag="VHF08_04945"
     CDS             1068..1502
                     /locus_tag="VHF08_04945"
                     /inference="COORDINATES: protein motif:HMM:TIGR00451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PUA domain-containing protein"
                     /protein_id="HEX2068026.1"
                     /translation="MIKKKWPTDTLPKIKNFKVYEIEEDKRILEYEDFMAVQVNKNTI
                     LPFLGRNKIIERFPSVNVDMGAVRFVCNGAKIMRPGITKFDMFHKGDIVGVKDQIHEK
                     TLAVGIALEDSKTASNNSKGYVIDNLHYISDKFWEAHKELSS"
     gene            complement(1644..2240)
                     /locus_tag="VHF08_04950"
     CDS             complement(1644..2240)
                     /locus_tag="VHF08_04950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit beta"
                     /protein_id="HEX2068027.1"
                     /translation="MAFQFMPGATAVGISYQGGVLLAAEKRVAFGNFVVNKNTKKTFA
                     VTELVGAACAGMIADMQVLVRQVGALAKIRKLETKRNVAPNSVAKLMSVIMFERRFFP
                     LLTQVIIGGVDGKPQIYTLDPLGSLLPDEYAAVGTGAEMALGVMDGEYKKEMSEEKAR
                     ELAIKAIKSSIQRDSSSGDGIDLLLISNNGHREESISF"
     gene            complement(2367..>3672)
                     /locus_tag="VHF08_04955"
     CDS             complement(2367..>3672)
                     /locus_tag="VHF08_04955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068028.1"
                     /translation="LEEIKEPTLNHNGTELTMKNPKVVIDIFRLTKEIRKLAILRHPM
                     FEVYVKEAENFVEWNFDRAQMIKAPDIQGHKIPVNIDNGRISGEIVIARRPLSEDERG
                     IAVMVGNHIVTRNNFGFDTKLNRVTGYIRCDTLTSRFADKSALIEDEEYLRFNQAMKT
                     FIIDIVLPSLTEYEDVLITREESKIYREIDKVLGQAVIENIESQEEVQGYEVVDMKEI
                     VKGGDVVDPNIDRVEENPSEFITSPKDESSDYRIPHTSGQAQDFTIVQEAVPNENSSN
                     VSQIDLEEQQQKAAQTASSEQLFEQGSSKTISQQAELVQVVEQKDINGTVIRTRKVRK
                     PIVKKTFALKKIGYKVIPYEDESDSRYSFTNENVVFVNKANSTYRAEAARGDEFLLRH
                     IINIVAETIAESKHPEGKHALELQNRLVAEAIRIHDYSMIKK"
BASE COUNT         1133 a          658 c          598 g         1283 t
ORIGIN      
        1 ctctatatat agattgcagc agataattgt atgaaataag agtacaacac acaattatat
       61 acatatagga gaatatcaga ttattcagtt gggcaattca ataccaaatc aatagaaatt
      121 tagatgtgct ctgtctatta atatatgaag tgcttaacaa tatcattgct ataatcgtca
      181 tctcttttgt tgtagtcggc actttgtggg gagtaggcaa tataattaac cgtcctgaag
      241 aatcatcaat aaaaaatatt tcaggcgtat tgttaatagc tcaaaataat gcatttaata
      301 agacaaatcc tgatatctat gctgctgtaa atgttcccaa gaaattagta gttctcaata
      361 aggattttgt aagacatgat cttgttgtag atgaattaaa gattaataca gcttatttgt
      421 cttctgagca ggattttact actgcaattg catcaaaaga gcccggtaca tttgaatact
      481 attgctcctt acatccaaca acaatgcaag gcaaaataat agttaatgaa aaataacgat
      541 ttgattccgc tgatgacaag agtatgcata tagtctagaa tataaaggat gtctcttctt
      601 atgataattc aattcttgat atgatcggat agtttacaaa taggtgaaag catttcttat
      661 atgattagta tgtttgcttt tatatttgat atccgatata ttgatatata tacaacaaag
      721 ccatcagaat tttaactttt ttcataaaga tattatataa ctgaaatgtg catattgctt
      781 gatgtaaaat agtctttctt ggttatgagt gtgttcatcg ttcatttatt agaagctcgc
      841 tagtagattt gatatccttg cctgctactc attaagctca ttaggatatg agccttctca
      901 ttatgcattt tttgttatct tcaggctctc ggcttataga gtataactat caataataaa
      961 tgaattccag aaagaatagt aaaattataa gcaaggagat attctagatt atagggatat
     1021 tgaaagtata tgttctttca aaaagtgata gctcttattt agttcaaatg attaagaaaa
     1081 aatggccaac tgatacacta ccaaaaatta aaaatttcaa ggtctatgag atagaagaag
     1141 acaaacgcat acttgaatat gaagatttta tggccgttca ggtgaataaa aatactatcc
     1201 tgccatttct aggaagaaat aaaatcattg agagatttcc ttctgtaaac gtagatatgg
     1261 gagctgttag atttgtgtgc aacggagcca aaataatgag acctgggatc acaaagtttg
     1321 acatgtttca caaaggcgat attgttggtg taaaagatca aatacacgaa aaaacattgg
     1381 cagtcggaat tgctcttgag gatagcaaaa cagccagtaa taattcaaag ggttatgtaa
     1441 tagataattt acattatatc agcgacaaat tctgggaagc acacaaagaa ctcagtagtt
     1501 agatacaaac aaatggtcaa cattaagatt tagttcaagg atagccttgc tcagttatta
     1561 agagtgatac aaatctagga tcatttctaa aatttaggct atttccattc attatgttta
     1621 tatacactac cataagctat tgttcaaaag cttattgatt cttctcgatg accgttatta
     1681 cttatcaata gtagatctat accatcgcca ctcgatgaat ctctttgtat agatgatttt
     1741 atcgctttta ttgccagctc tctggctttt tcctcagaca tttctttttt gtattctccg
     1801 tccataacac cgagtgccat ttcagctcct gttcctacag ctgcatattc atcgggaaga
     1861 agggatccaa ggggatctag tgtatagatc tggggtttac catcaacacc tccaattatt
     1921 acctgagtta ataatggaaa gaaccttctt tcaaacatta tgacagacat taacttcgca
     1981 actgaatttg gcgcaacatt acgcttagtc tcaagttttc taattttagc aagagcacct
     2041 acttgtctta ccaatacctg catatcagct atcattcctg cacaagcagc acctacgagc
     2101 tcagtaacag caaaagtttt ctttgtattc ttgtttacaa caaagttacc gaatgcaaca
     2161 cgcttttcag cagccaagag gactcctcct tggtatgata ttccgacagc cgtagcaccc
     2221 ggcataaatt gaaatgccat agatttccag gatatatccg atagtagtta aatttagtcg
     2281 tttctattct ttaattcact tggtagcgtg ttacaatata aaaaataata tagttaaaag
     2341 ttccagctaa ttgtggttat aataaattat ttttttatca tagaataatc atgtattcta
     2401 attgcttctg ccaccaatct attttgaagt tctaaagcat gctttccttc agggtgttta
     2461 gattcggcta tagtctcagc tacaatgttg attatatgtc ttaatagaaa ttcatctcct
     2521 ctagctgctt ctgcacgata agtcgaattg gccttattta caaatactac attttcatta
     2581 gtaaaactat atctcgaatc tgattcatcc tcataaggaa ttaccttgta gccaattttc
     2641 tttaatgcaa atgtcttttt gactataggt tttctaactt tccttgttcg tatcacagtt
     2701 ccatttatgt ccttttgctc tactacttgt actaattctg cttgttgaga aatagtcttg
     2761 cttgagcctt gttcaaatag ttgttctgaa gatgccgtct gagcagcttt ttgttgctgt
     2821 tcttccaaat caatttgtga tacatttgaa gagttctcat ttggaactgc ttcttgtact
     2881 atcgtaaaat cttgggcttg tccagaggta tgtggtatcc tgtaatcaga agattcgtct
     2941 ttcggtgaag ttataaattc agaaggattt tcttcgactc tgtctatatt gggatcgaca
     3001 acatctcctc cttttacgat ttctttcata tcaaccacct catatccttg cacctcttct
     3061 tgagattcaa tgttttcgat aacggcctgg cctagcactt tgtctatctc tctatatatc
     3121 ttggattcct cacgagtgat taaaacatct tcatattccg tcaaactcgg gaggactata
     3181 tctattataa atgtcttcat tgcttggttg aatcttaagt attcttcatc ttcgattaaa
     3241 gcagatttat ctgcaaacct tgacgttaag gtgtcacatc gtatatatcc cgtcactctg
     3301 tttaatttgg tgtcaaaacc aaagttgtta cgtgtaacaa tatgatttcc taccattacg
     3361 gctattcctc tttcatcttc agaaagtggc ctccgtgcaa ttactatttc gccactgatg
     3421 cgaccgttat ctatatttac gggaatcttg tgaccttgta tatccggtgc tttaatcatc
     3481 tgagctctat caaagttcca ttctacaaaa ttctcagctt ctttgacata gacctcaaac
     3541 ataggatgtc ttaatatcgc cagcttacga atttcttttg ttaacctgaa gatatcaata
     3601 acaacctttg gatttttcat agtaagttca gtaccattgt gattaagcgt aggttcctta
     3661 atttcttcta at
//
LOCUS       DATAAS010000304         4562 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2498628, whole genome shotgun sequence.
ACCESSION   DATAAS010000304 DATAAS010000000
VERSION     DATAAS010000304.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4562
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2498628"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(374..535)
                     /locus_tag="VHF08_04960"
     CDS             complement(374..535)
                     /locus_tag="VHF08_04960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068029.1"
                     /translation="MLYNVTQWSNFVIHAERSLMNELKEFDIQAPLREFYSSAQMNVV
                     KTILMNLVN"
     gene            711..1004
                     /locus_tag="VHF08_04965"
     CDS             711..1004
                     /locus_tag="VHF08_04965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068030.1"
                     /translation="MAILRVYKRNSTFVDLANLVEEISKMGLVDALQKYHNTPLEKEA
                     KSIVAGPSFLQFLNKLFQIQISAGDVIQFESGNNSKHYMLSATGTWDEILRLE"
     gene            1173..2057
                     /locus_tag="VHF08_04970"
     CDS             1173..2057
                     /locus_tag="VHF08_04970"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX2068031.1"
                     /translation="MQLDISKDEVYQVIKNEASEEERKKTSVKHLSNTSSLGMFYLDA
                     VININLAVKHAQHSMWKALKGVPEFNISMVEETQNILESYAKSKVTFVILHIDIVGSS
                     RMSMTLPVERLATIIQTFTQEMSLMIAAYGGYVLKYIGDAVLAFFPLSSHDQYLPCIN
                     AVNCARSMIKIMREGMNPILNEYGYPEIAVRVGVDIGENIVAQYDLGTHTPTIKDKQI
                     IKKPHLDILGYTISIATKMTIFAKPNQIIIGQFVYDVLDDVQKSTFKALPVSSDVWSY
                     VTNNTGDIYSLYCSNIKE"
     gene            2190..2348
                     /locus_tag="VHF08_04975"
     CDS             2190..2348
                     /locus_tag="VHF08_04975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068032.1"
                     /translation="MTTLPQGDLPRDLGILHTVAKYNQVPAGVYASMLHSGGGGTICC
                     RDLIRLEP"
     gene            2927..3091
                     /locus_tag="VHF08_04980"
     CDS             2927..3091
                     /locus_tag="VHF08_04980"
                     /inference="COORDINATES: protein motif:HMM:NF016798.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUN14 domain-containing protein"
                     /protein_id="HEX2068033.1"
                     /translation="MSIVDSFNPPAATLGEVFFVGLLISYAIKKVIKIVAVIIGLFLA
                     RLAHLQYHHR"
     gene            complement(3355..>4562)
                     /locus_tag="VHF08_04985"
     CDS             complement(3355..>4562)
                     /locus_tag="VHF08_04985"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX2068034.1"
                     /translation="HSLGDIMRRATDAKKNGLNIQIELNYKLLKSRMEATVSRLASGI
                     KILLKSNNVKLLEGQAHIVSENKVAVNDIMIETKNIVIATGSHPICLPGYQFGEKILS
                     TTSILELEDLPNSVTIIGGGYSGCEFASILNALGCKVSLIEAENHLLPFQIKGIGNTI
                     EKYMRLDGVNVMTQSRVEKISDNIAFVNGEKIVAEKILICVGRRPNITPNELNNIGIK
                     FNQQGIYVDEKMQTNIHNVYAIGDVTGMYELAHVASRQGEVAAENIMRIKENNKIDYQ
                     SLPVCVFTYPEVAYVGELKGRSGEFPLAASAKANCLGDTRGLVKVFEKEGKLVGTYII
                     APHAGEIIGEAALAIKMKISLKDIFHTLHAHPTLPESFAEAVRDIDNQAIHLPSKNED
                     QIRKFVHSY"
BASE COUNT         1515 a          789 c          781 g         1477 t
ORIGIN      
        1 tttactttca aatctatact cataggatta aaatacaata agtaaaggca atatgcgatt
       61 atggccgtat ctgatctaat aacatgtttc agattatcca cgaaacaatt ataaaatact
      121 cagctttagg ttatgctaac actattacga aaatatgctt aggttaatcg gggttttcca
      181 tgtactaaat aaatgcaaac caaaaagatg ttaatataat ctagttcaat ctatagattg
      241 attattacaa taaagagatg tttcttaaat taacagagtc attttatcta ctccaaataa
      301 ctggttgatt tcatctaaac tatatctacc tgctaaacct aaaaaggaat ctatgaactc
      361 tatatttctt cgactaattt actaggttca ttaagatagt ttttacaaca ttcatctgag
      421 cagaagaata aaactccctt aacggagctt gaatatcgaa ctcctttaat tcgttcatca
      481 aactcctttc cgcatgaatt acaaagtttg accattgcgt tacattataa agcacatctt
      541 cttataaagc tcttgtctgg ccatattatt atatgagcat attaagaaca atttattcag
      601 actacttcaa gaagcatgct tttgaccata atcacactca gctatgatat acacatatcg
      661 ttatattgcc attcacatta tataataagc atagaggata tatctttata atggcaatac
      721 tgagagtcta caaaagaaac tcgacctttg tggacttggc taatcttgtg gaagaaatta
      781 gtaaaatggg attagttgac gccctacaaa aataccataa tacacctctt gaaaaggaag
      841 ccaagagtat agtagcagga cctagtttcc tacagttctt aaacaaatta tttcaaattc
      901 aaatatcagc tggagacgtc atacaatttg aatctggaaa taacagcaaa cactacatgc
      961 tctcagcaac cgggacgtgg gatgagatac tcagattaga ataactccgt tgcataagag
     1021 aaaaaaaaga atgaatttag gacaataagt ttgcaggaaa aagagagaga tagagagaga
     1081 ggtgctataa tttcgtagat acaggacaac aacaacatca acagacgatt ctcaatctat
     1141 acaattctgg aattctacca gatataattg caatgcagct agacattagc aaagacgaag
     1201 tttatcaggt tataaaaaat gaagcgagtg aagaagaaag aaaaaaaaca tctgtcaaac
     1261 atctttcaaa tacttcttcg ttaggtatgt tctatcttga tgcggtaata aatatcaact
     1321 tagctgtcaa acatgcacag catagtatgt ggaaggcttt gaaaggagta ccggagttta
     1381 atatctcaat ggtggaagaa acacagaata ttcttgaaag ttatgcaaaa tctaaagtta
     1441 catttgtaat tttacatatt gatattgtag gctcaagtag gatgtctatg actctgccag
     1501 ttgagaggct tgcaactata attcagacat ttactcaaga aatgtctctt atgattgctg
     1561 catatggtgg ttatgtgtta aagtatatag gagatgcagt tttagcattt tttcctttaa
     1621 gttcccatga ccagtatttg ccttgtatta atgcagtaaa ttgtgctcgg tctatgatta
     1681 agataatgcg tgagggtatg aatccaattc taaatgaata tggttatcca gagattgcag
     1741 tacgtgtagg tgtagatatt ggtgagaaca tagttgcaca atatgacttg ggtactcata
     1801 cgcctactat aaaggataag cagataataa aaaaaccgca tcttgacatt ctagggtata
     1861 ctattagcat tgcaactaaa atgacaatat ttgcaaaacc taatcaaatt ataattggtc
     1921 agtttgtata cgatgtattg gatgatgtac aaaaatctac ttttaaagct ctgccagtta
     1981 gttcggatgt gtggagttat gtcactaaca atactggaga catttacagt ctgtattgta
     2041 gtaatataaa ggaatgaaaa gaaagagatg cggatgagat ctgatataaa gcaacaggac
     2101 ctataacaat ttaaaaaaca agttattttt aagtaactat aggcgaagac attctgctga
     2161 aggtcactgg atcttgcatt aggtgtgtga tgaccactct gccgcaggga gatcttccca
     2221 gagatttagg tatcttgcac acagtcgcaa agtacaatca ggtgcctgcc ggagtttacg
     2281 catcgatgct gcatagcggg ggcggcggga caatttgttg cagagaccta attcgactcg
     2341 aaccatagac gttaatcctg taggctcttt attggacaat ttgttcgaca tcccgtcatt
     2401 gacacctgac ataatcgatc agcttcagtt tattggatgt actgaatgaa acccccaaat
     2461 cagaatctat tcagggcggt acaaaagaga gagtattaac atcaaatgaa attcccaatc
     2521 tcgtttgtaa tcctcattaa tcctaagttg tcttactact gctatcgaca tggttgttct
     2581 aaatacatgc tgaagaattt acatgagatt tagttgtaac agtagtagca atctgttcca
     2641 taaatctaca catattgaac agaaaagtct actacaaaag caatatcttt tatagaaaat
     2701 agagtatatg ctataaagac aaattgttat caaaggttta ggtaaacaaa tagatataga
     2761 acatccagca tacacaaaat atgctggtac gagttttcaa tccatagtat ggatgttgat
     2821 atttgatatt gttactataa agaggaatgc tgcagtacta cagagatatg aaaataatca
     2881 ttgcataact acagctaacc tcctaaggag caggaacatc taaaatatga gcattgttga
     2941 tagtttcaat ccacctgcag ctactctagg agaagtcttc tttgtaggcc ttctcatcag
     3001 ttatgccata aagaaagtga tcaaaatagt agctgtaata attggattat tcttagctag
     3061 attagcgcat ctacaatatc atcacagata gctaacaaat tcatgctgat aacaggcaat
     3121 ttcaccggta aattggtggt aaaaactacg tatggactgg gcgggattat atcccttgtg
     3181 gtagagaggt tcagctattt tatcaaataa cttttattat tattattcat tagcatggat
     3241 tctgtcagaa tggtgtagaa tttatcgcct tttacaagtt gcaaataaat aaataattaa
     3301 gctaggtaat attgattatt gtgtgctatt atattcattt ttcctagtac cacgctagta
     3361 agaatgaacg aatttacgaa tttgatcttc attctttgat ggaagatgga tggcttgatt
     3421 atcaatatct cttacagctt ctgcaaatga ctccggaaga gtaggatggg catgtagagt
     3481 atggaatata tctttaagac ttattttcat tttgattgct agtgctgctt cacctattat
     3541 ctcacctgca tgcggtgcaa taatataagt tcccacaagt tttccttcct tctcaaagac
     3601 cttaacaagt cctcttgtat ctcccaaaca atttgctttt gcacttgctg caagtggaaa
     3661 ttctccagac cttcctttta attcccctac gtaagcaact tctggataag tgaatacaca
     3721 cacaggtaaa gattgataat caattttatt gttctctttt attcgcatta tattttcagc
     3781 agcaacctca ccttgccgag aggcgacatg ggcaagctca tacatgcctg ttacatcacc
     3841 aattgcatac acattgtgaa tgttggtttg cattttttca tctacataaa tgccctgttg
     3901 gttgaatttt attccaatat tatttagttc attaggagtt atatttggtc ttcttccgac
     3961 acaaatgagt atcttttctg ctacaatttt ttctccatta acaaatgcta tattgtcact
     4021 gattttttct actcttgatt gtgtcattac attgactcca tctagcctca tatatttctc
     4081 aattgtattt ccaattcctt ttatttgaaa aggtaataga tgattttcag cctcgattaa
     4141 agatacctta catcctagag cattcaagat agaagcaaat tcacatccac tatatccacc
     4201 tcctataata gtgacggaat ttggcaggtc ttctaattct agaattgagg tagttgatag
     4261 tatcttctct ccaaattgat aacctggcaa acaaatagga tgacttccag tagcaataac
     4321 aatatttttt gtttctatca taatgtcatt aactgccact ttattttctg aaactatatg
     4381 tgcttgacct tctagtagct taacattgtt gcttttgaga agaattttta tccctgatgc
     4441 aagtctagaa actgtagcct ccatcctaga ctttagaagt ttataattca attcaatttg
     4501 aatatttaat ccatttttct ttgcatcagt tgctcttctc attatatctc ctaacgagtg
     4561 aa
//
LOCUS       DATAAS010000305         2624 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3028611, whole genome shotgun sequence.
ACCESSION   DATAAS010000305 DATAAS010000000
VERSION     DATAAS010000305.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2624)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2624)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2624
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3028611"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(365..784)
                     /locus_tag="VHF08_04990"
     CDS             complement(365..784)
                     /locus_tag="VHF08_04990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0120225 - coenzyme A binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEX2068035.1"
                     /translation="MEVDLHSDSELRRIYDLKNIAVVGMSKNEGKPAHFVPKYLIEHG
                     YNVIPVNPTITEVLGRKSYPSIADMPEDVDVVDIFRRSEDVPVVVMDAMKKKGIKVIW
                     MQEGIYNEEAERKAKENGMDVVYNRCMMAEHKRLFSK"
     gene            1378..1923
                     /locus_tag="VHF08_04995"
     CDS             1378..1923
                     /locus_tag="VHF08_04995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068036.1"
                     /translation="MEILQDRNLAKYLFEKYTTNPKNWNFIISTSSLNDGFFDATVSN
                     TDEVWQLKIDSIYKPLPIVIGTKVDLDSTNIEKRISSSALPFGYRKLEPPVIMNILRN
                     LTEEQHMNARKESGANDYLNSILSSLETVTPVSGKNYVYGPVVFTKGNPVNSNGYQKQ
                     VAEKLAFKLRDNLRNRYSSYG"
     gene            2367..>2624
                     /locus_tag="VHF08_05000"
     CDS             2367..>2624
                     /locus_tag="VHF08_05000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068037.1"
                     /translation="MISIMRNSFDFFKTGGVFLITVVSFIFIGYFDYVYAQPVINDPS
                     LMAEIVVEELSSPTSMAFMDSNNILVLEKTGSVRLISNGILQ"
BASE COUNT          906 a          403 c          404 g          911 t
ORIGIN      
        1 ggaaaagatt ggtaaatgag aataaagaaa aggaaagaac aaagagaaat tagcatatac
       61 tatccataat tatgcttgaa cataagtatg aatgattaat gagcatatcc tattatcgtg
      121 tagattaatt tggatcaagc aaactgactt tattgtcctt acaaaaaccc aagatattat
      181 tattactgca tacaagaaca gtccaaacaa tgaaaattgt tacatttttg atataggata
      241 tctgttagac ctacaatatt taggcaagaa aaatcaataa acaatattca ttctaattgt
      301 catttagtaa gaatcagaaa tctttagtca aagcttttat gtcttcttga tcgatagaat
      361 aatcttattt actaaatagc cgtttatgtt ctgccatcat gcatctatta tacacaacat
      421 ccattccatt ttctttcgct tttctttctg cttcttcatt atagatgcct tcttgcatcc
      481 agattacttt gatccctttt ttcttcatag catccattac cacaaccggt acatcttctg
      541 atcttctaaa aatatctact acatctacat cttcaggcat atctgctatg gatggatatg
      601 attttcttcc aagcacttct gttatggttg gatttactgg aataacgtta tatccatgtt
      661 caataagata cttgggcaca aagtgagcag gctttccttc attttttgac attcctacta
      721 ctgcaatatt tttcaagtca tagattcttc tcaattcaga atcagaatgt agatctactt
      781 ccatgtcaat agttatttgt tatttattat atttattaat tcgatcttat tagatatcat
      841 atttacgtac agataataat attgcaatta taccgggagt atgtattatt cttttgttgt
      901 tattataatt ccttgcaatc atatagatat actatttgcg attcacatta gataaattag
      961 ataaactacc tataaggata tcaatgataa ttcttagttc aaccattagc tcgatcctat
     1021 aaaacacagc caccggaata tagtatagca ttttagattt tgttagcggc tcgaataatg
     1081 tacgtaagaa attgcttaat attattgatg ttatacgaca aacaccaaaa atatcagatt
     1141 atagaaaaaa tatacttgac cttatgctag gaccttatcc catgaatgct agaaattatt
     1201 ctactacgat gatctaaata taataaaagt ttgttaaata agtgtgattt aatcaaaaag
     1261 tatctctaac tttattggat aaagtatgtt ttggaaatcg aaaaagaatg gttttctgcc
     1321 ctatagttaa caaatgctgc aatacatata ttgtcgtaat tcattctatc ttttgctatg
     1381 gagattctac aagatagaaa tcttgccaaa tatctttttg aaaaatacac gacaaatcca
     1441 aaaaactgga atttcatcat ttcaacttct tctttaaatg acgggttctt cgatgctaca
     1501 gtttcgaata ctgatgaggt atggcaactc aagattgact caatttataa accattacca
     1561 atagtaattg gaacgaaggt agacttagat tctacaaata tagaaaaaag gatcagtagc
     1621 agtgctttac cctttgggta cagaaagctt gagccacctg taataatgaa tattttaagg
     1681 aatctgactg aagaacaaca tatgaatgca cgtaaagaat ctggtgctaa tgattatctt
     1741 aattcaattc tcagttctct tgaaactgta actccagtaa gcggaaagaa ttatgtatat
     1801 ggaccagttg tctttactaa aggaaatcca gtaaattcta atgggtacca aaaacaagtt
     1861 gccgaaaagc tagctttcaa attgcgtgat aatttgagga atagatactc aagttatgga
     1921 tagacaaaga aagattttca tatatcttat ggtagattag ttcttatagg ctaggtatta
     1981 gaatgccatg atttatagat tgttttagac ttgttttttc taccgctcta acgatagcaa
     2041 atgatgaaac tctatccctt ctgcttttag tcagaaagag ttaagttgta acaagttagg
     2101 gcaatagtca tttctttcaa tgcttttatc gctgttttaa gtcatcaatt ctttgacaca
     2161 tgtatgaaga agaagcaaat agttaaataa gaataaaagt atttttctag actattatta
     2221 ttaatattta tgataattat tggctcccca gttagtaatt gggataatgc ctgaaagagg
     2281 aaacataaac tatacgatga tctgaataca tagataaaca ataagattta gataactaga
     2341 cagaagaaag aggaacagac aataacttga tatcaattat gagaaacagc tttgactttt
     2401 tcaaaactgg tggagtattc ctgattactg ttgtgtcttt tatattcatc ggatattttg
     2461 attatgttta tgcacagccg gttatcaacg atcctagcct aatggcagag atagttgttg
     2521 aggaattatc ttctcctaca agtatggcat ttatggatag taataacatt ttagttttgg
     2581 aaaagactgg ctcagtacgt cttatttcaa atggtatttt acaa
//
LOCUS       DATAAS010000306         2358 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_335559, whole genome shotgun sequence.
ACCESSION   DATAAS010000306 DATAAS010000000
VERSION     DATAAS010000306.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2358)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2358)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2358
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_335559"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..193
                     /locus_tag="VHF08_05005"
     CDS             <1..193
                     /locus_tag="VHF08_05005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068038.1"
                     /translation="VWIWNKNYFLLNTLFLCKVIIEREQSKQLIQGKNLGRLSKSHIF
                     AVILFNKILLLLINISFDY"
     gene            358..1368
                     /locus_tag="VHF08_05010"
     CDS             358..1368
                     /locus_tag="VHF08_05010"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate kinase family protein"
                     /protein_id="HEX2068039.1"
                     /translation="MNPIVVMSDFFIDRLIKLNSKKEFFNALADKARFGGGSIRGIPT
                     VDVKGGNAVNVAYCLASLGAKVTLFTIADDIGSAIIRQVFSKFGDRSNLQIINGKHGR
                     TTSFEFQDEMYSKVNVMVSDIGDNANFGPERIDSADDLKILNNADGVIVVNWASNFKG
                     TQLAEHVFANSPKALHFIDPADIETRKQEFLDSMTKIAYITDVLSINENECNSLAKVV
                     GIEPLLLECHSQTSVRNAAKKLAEKIGISIDLHTKIGAAWSNGKETEFVHAIKVEAQT
                     LTGAGDSWDAADIIGYLAGLDAEERLIYANACASLYIRNPHAQPATMTEVSELLERIG
                     HK"
     gene            1683..2045
                     /locus_tag="VHF08_05015"
     CDS             1683..2045
                     /locus_tag="VHF08_05015"
                     /inference="COORDINATES: protein motif:HMM:NF024997.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HEX2068040.1"
                     /translation="MSEFVRRNHVSIWNWIQHYKPEKMFHTKRRIYEFIVDETLIKVG
                     GEFVWLWIASEPKDKTILGIHISYERSMLIAEHFIHSLVKKYGKHPVSTDGGTWYPQA
                     CRFLKLQHHILTHHMKKV"
BASE COUNT          826 a          375 c          415 g          742 t
ORIGIN      
        1 ggtatggata tggaataaaa actacttcct gctcaatact ctatttctct gtaaagttat
       61 aatagaaaga gaacaatcaa aacaattaat tcaaggaaaa aatctaggaa gattaagtaa
      121 atcgcatatc tttgctgtta tattatttaa taaaatactc ctgctattga ttaacatcag
      181 ttttgattat tgattattca gtattaaaag aaaatcagca tatttacaat ctattaaatt
      241 tttcattaag caaatttctc attttcccaa gagataaata atgtaaaatt atattatttt
      301 tggtgctatc aatttaaacc tccagtaata gacaagatag aaagttacta ttcttatatg
      361 aatcctatag ttgtaatgtc tgattttttt attgaccgtc taataaaatt aaactcaaaa
      421 aaagagttct ttaatgcctt agcagataaa gcaaggtttg gaggtgggag tatccgcggt
      481 attccgactg tggatgtaaa aggaggaaat gcagtaaatg ttgcatattg ccttgcgagt
      541 ctaggtgcaa aggttactct atttacgatt gcagatgaca ttggctctgc tataataaga
      601 caagtattct caaaatttgg agatagatca aatcttcaga taataaatgg aaaacatggt
      661 cgtactacat cgtttgaatt tcaagatgaa atgtactcta aagtaaatgt tatggtaagt
      721 gacattggag ataatgcaaa ttttggtcct gaacggattg attctgcaga tgacctaaaa
      781 attttgaata atgcagatgg agtaatagta gttaactggg ctagtaattt taaaggaaca
      841 caattggcag aacatgtatt cgccaattct ccaaaagctc tacattttat agatcctgct
      901 gatatcgaga caagaaaaca agaattttta gactcgatga caaaaattgc ctacatcacc
      961 gacgttctaa gtataaacga aaatgaatgt aattctcttg caaaagtagt tggaattgaa
     1021 ccacttctct tagagtgcca tagccagaca agtgtaagaa atgctgcaaa aaaacttgca
     1081 gaaaaaattg gaattagtat tgacttacat actaagatag gtgcagcatg gtcgaatgga
     1141 aaggaaactg aatttgtaca tgcaatcaaa gttgaggcac aaactctaac tggcgctggc
     1201 gattcttggg atgctgctga tattattggt tatttagcag gattagatgc cgaagaacga
     1261 ttaatttatg caaatgcatg tgcctcactt tacattagga atccgcatgc ccaaccggct
     1321 accatgactg aagtttctga actactagaa agaataggtc ataaataagg taattttgct
     1381 taaatttccc aaaagttaat gcaataagct ctggatcctc atttccattt ctataattag
     1441 aaactgcttt taatcccttt atttatctta gtgctcataa aaaactttac aactatcttt
     1501 ttgtcttccc ttcttcccgt catatagcgg gaggctctgt tcacttaacg ataaacctat
     1561 agctgaagat attctctact tctattatgc tcctaagaag aaatagaaca tcttcaaagt
     1621 acattttcta tgcattgcac ttatactttt caggtctatc tttaagaaag acatccaaat
     1681 gtttgtctga gtttgtaagg agaaaccatg tctctatctg gaattggatt cagcattaca
     1741 agccagaaaa gatgtttcat acgaaaagaa ggatttatga attcatagtt gatgaaactc
     1801 tgatcaaggt aggtggtgaa tttgtttggt tatggattgc tagtgagcct aaagataaga
     1861 caatccttgg aatacatata tcctatgaaa ggagtatgct tattgctgaa cactttatac
     1921 attccttagt aaagaaatat ggaaaacatc ctgtttcaac tgatggtggt acatggtatc
     1981 cacaagcctg tagattcctg aaactacaac accatattct cactcaccat atgaaaaaag
     2041 tataattgaa agaaccattc aatatgttaa ggacagaact gaaagttttg atgactattt
     2101 tccctgtaga aaagaaaggg aagaaggaag aagatgtaaa ctacaacata tcacaaattg
     2161 gtttaatctg ttcattcata tgcataatag aatgattact tgctatagtg ttaagtgaac
     2221 agagcccatt acctatccct ctaggatgta aaagctttct atttgtgact gtgattgtaa
     2281 ccgcgtgacc gttaggagtt acacgccaat aacaaatcta ccactagaga tacacactga
     2341 aaaatcattt ttaatgtg
//
LOCUS       DATAAS010000307         2322 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2501875, whole genome shotgun sequence.
ACCESSION   DATAAS010000307 DATAAS010000000
VERSION     DATAAS010000307.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2322
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2501875"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..248)
                     /locus_tag="VHF08_05020"
     CDS             complement(<1..248)
                     /locus_tag="VHF08_05020"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068041.1"
                     /translation="MIDYYKFAIPGIVVVIIGGMISGIMAYNFYPEKHVNVNIDDGKC
                     YELLDSANVKYQNLAAKNKIEILKLQLDAINSEKEQAV"
     gene            complement(293..604)
                     /locus_tag="VHF08_05025"
     CDS             complement(293..604)
                     /locus_tag="VHF08_05025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068042.1"
                     /translation="MKMDYFEIDRVIEELARTYAAPCTTTWFKVTNNKKPSKEEYRNK
                     VVEFMKNLENTLSSYYPKNQESDVFIEYAKNGLRQQISMVLAGNNKEVERRHRYYVDY
                     N"
     gene            complement(1338..2180)
                     /locus_tag="VHF08_05030"
     CDS             complement(1338..2180)
                     /locus_tag="VHF08_05030"
                     /inference="COORDINATES: protein motif:HMM:NF021378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SHOCT domain-containing protein"
                     /protein_id="HEX2068043.1"
                     /translation="MSTITDNDPKNRRRPQQHKVQAIPEAESIISNQVYDNRRNEIHE
                     YLRLFGYKPDKTIIQVHITGFFRKKGQQPSQKEKERHTAAVKRYGGTSFVIVGRTHDP
                     SIIENVVKPKKKNPLDTSPGYVGYLWKNKDPQKRAPHDVLPLDFTPIHLPYPTDWKNI
                     FATKGFMLALHVPSSFAKDKNRLTRALYRLGKSGIIDVKNEWTFLNDIKQFGFNNIQQ
                     KETVSVITKTDKSNSNMNYDDNNEENKVIDKEEDPVRIIKRRLAKGEISKEEYEELRK
                     SIES"
BASE COUNT          707 a          406 c          325 g          884 t
ORIGIN      
        1 attactgctt gttctttttc tgagttgatt gcatcaagct gtaattttaa aatctctatc
       61 ttattcttag ctgcaaggtt ttgatactta acatttgctg aatcaagtaa ttcataacat
      121 ttaccgtcat ctatattgac atttacatgc ttctcaggat aaaagttgta agccataatt
      181 ccacttatca tacctccaat tataacaaca acaatacctg gtattgcgaa tttatagtag
      241 tctatcatta tttttttgca ccgtcttgtc ttactgtatt ataaatactt ctctagttat
      301 agtcaacata atatctatgg cgtctttcta cttctttatt atttccggca agtaccatcg
      361 agatttgttg acgtaaacca ttttttgcat attctataaa tacatccgac tcttggtttt
      421 tgggatagta agatgataat gtattttcta gattcttcat gaattctact actttattac
      481 gatattcttc tttggaaggc ttcttattgt ttgtcacttt gaaccatgtt gttgtacacg
      541 gagcagcata cgtcctggca agttcttcaa ttacacggtc tatttcaaaa tagtccattt
      601 tcataatata ttataggcaa tagtaattga tattctgggt ggaaacaaat tgagccccaa
      661 aatttccgga tcggaaaatt tattcttttt ttgcatttaa aattaatgta gttaaaaagc
      721 catccattcc aacaatttcc gatttggaaa tgaatattct gtatttttga tttatacata
      781 tctagatcga tgaattgata aaaagcttat ttttcttatc atggcaaaaa atgcacgata
      841 tcctcagctg aaatcataaa tagttacaag atattggata taaaaaaaca gaatgaacaa
      901 taagatacag acttgcagat tagaaaaatc aatataatac ttggttattc ggttattctc
      961 aatccgggtc ttgatgatat ttctaatatc ttccttgttt gttcaatata taattatatc
     1021 ataactatac tggtttcaac cacaatttat catgataaat tgaattggct gaaatcatac
     1081 atatacaata ttgctacatc aacgtctgtc aacaaaacca tttagttcac taattactta
     1141 actatatgat cgaagtattc gatcctaaca tgaataactg ttgccataat aagggataat
     1201 gaaattggcc ttccactagt attgccaaaa actcaggaag atgtacgtca gtgatactaa
     1261 ttactagatc gtatagagag caaacttatt ctcaatttaa ctcttataga taagaacata
     1321 atgttattat caataggtca tgattctatc gactttcgca attcttcata ttcttcctta
     1381 cttatttcac ctttagctaa tctccttttt attatcctta caggatcttc ttccttatca
     1441 ataaccttgt tttcttcgtt gttgtcatca taattcatat tactattgct cttgtcagtt
     1501 ttagtaataa cactaactgt ctccttctgt tgtatgttat taaatccaaa ttgctttata
     1561 tcattaagaa aggtccattc atttttgaca tcaataatac cacttttacc aagacgataa
     1621 agagctcttg tgagtctgtt tttatcctta gcgaaagaag aaggaacatg taatgctagc
     1681 ataaaacctt tggttgcaaa aatatttttc caatctgtag gatatggtag atgaattgga
     1741 gtaaaatcaa gaggtaatac atcatgtggt gctctctttt gtggatcttt attcttccac
     1801 aaataaccta catatcctgg acttgtatct agaggatttt tctttttggg tttgactaca
     1861 ttttctatta tagatggatc atgtgttcta cctacaatta caaaagaagt tcctccatat
     1921 ctttttactg ctgctgtatg gcgttctttt tctttctggc taggctgttg ccctttctta
     1981 cggaagaacc cagttatatg cacttgaatt attgtcttat ccggcttata tccaaacagc
     2041 cttaggtact catggatttc atttcttcta ttatcatata cttgattaga gattatactc
     2101 tctgcttcag gaattgcttg tactttatgc tgctgtggcc ttctcctgtt ctttggatca
     2161 ttatccgtga tagtagacat gaattgatta tagtatattc atcattctat atgtgacttt
     2221 acaacacgag atgtttatca tatcaaaaat actgactgaa aagtagtctt cagaaaagaa
     2281 aaatgaaaat gtctccttca ctatctctac taaaccatat tt
//
LOCUS       DATAAS010000308         3851 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1526272, whole genome shotgun sequence.
ACCESSION   DATAAS010000308 DATAAS010000000
VERSION     DATAAS010000308.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3851
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1526272"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            113..583
                     /locus_tag="VHF08_05035"
     CDS             113..583
                     /locus_tag="VHF08_05035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0016653 - oxidoreductase activity, acting
                     on NAD(P)H, heme protein as acceptor [Evidence IEA];
                     GO_process: GO:0006784 - heme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HEX2068044.1"
                     /translation="MKANDIVILKILSFSTISVLFALIFIGGYVNASGVGLSCPDWPL
                     CPAGFVPLEEFIIEYFHRTVAATTGLLVIVTMIFTLKSRLTTRGMKIASIIASVAVIG
                     QIILGAIVIIERLHAILVTIHLGLGLVLFSMSLITVLSAFKLSEDKTIRTASKV"
     gene            complement(906..1955)
                     /locus_tag="VHF08_05040"
     CDS             complement(906..1955)
                     /locus_tag="VHF08_05040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068045.1"
                     /translation="MFFLSYTSTSLIRESYGHLEHFPHYNGGGDGVGQYYAYIGLNPE
                     YARPHEITQITFSIQDFNGNDVHNVETMVEIYETLNGQRVAAYPWTLHNIGDFNINYV
                     FPRIGNYQIVLSVANNNDDSIINYNEVGPPRSILGNTQNCNCDRAVFNVSISNNFGSI
                     YTTTLLMAVTGPIIVFGVVLGLSYRNRRKRRGMYSKLSEKELLKYSIMFLAIAAGLVH
                     LAIFSEHGSRHIYYSIFLLAAGGAQIAYGISYVLITLTNESNYYKNRDSVMVYYRKTV
                     LINLFGLVGTGVLLGLYTYSVIFPPPLSPTDEPEEIDLAGILDKSLEIFLFAGIIYLM
                     KWEKQRSQNQLVDIK"
     gene            2346..3296
                     /locus_tag="VHF08_05045"
     CDS             2346..3296
                     /locus_tag="VHF08_05045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEX2068046.1"
                     /translation="MWKVMMPRKIAFGENAAKEFEYPTNSLIITTTTPDVYNRWLEYM
                     QIRNYEVYDKVTPDPAIETVETIRKEYEGKNISAYIGLGGGSSMDVCKYLSKVTGIPK
                     ILIPTTFGTGAEMTTYAVISFEHKKKLLQDEKFLADAAIVDPYFLPGTPFNIMRNSAC
                     DAAAQASEGYDSKLANPFTKLFCKEAFDILEDALINDKPHLLPYGAMLSGIGFGNSST
                     TLGHALSYVFSNEGVAHGYSLSSCTTVAHKFNKSVYYERFKRICQKLKFEPLKLKQPL
                     DQAADVIMPDRGHLDNNPVPVTRDDIIKCLNEIVNSNPLA"
     gene            3630..>3851
                     /locus_tag="VHF08_05050"
     CDS             3630..>3851
                     /locus_tag="VHF08_05050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2068047.1"
                     /translation="MTIISKSIEINAPVSEVFTYFARPEHMADQFPESMNLNVIPIEV
                     KNGFGVGTIFRINGDFDGKKLEWDCETIDY"
BASE COUNT         1291 a          631 c          671 g         1258 t
ORIGIN      
        1 acagcagata tagaagcagg agaatacgac tatcattgta ctgtacatcc atttatgaca
       61 ggcaaactaa tagtacaata gtaataatag cgtgtatata tcataacacg acatgaaagc
      121 taatgatatt gtcatactca aaattctctc tttttctact atttctgtgc tttttgctct
      181 catattcata ggaggatatg taaatgcctc tggagttggc ttgagttgtc ctgactggcc
      241 cctttgtcct gctggttttg tgccgcttga agaatttatc attgaatatt ttcataggac
      301 agttgctgct acaactggat tactagttat tgtaactatg atatttacat taaaatctag
      361 gctcactaca agaggaatga aaatagcatc aataattgct agcgtcgcag tgataggtca
      421 aataatatta ggggctatag ttataatcga gcggttgcat gccattctag tgacaattca
      481 tcttggactt ggactggtat tattttcaat gagtttaata actgttctat cggcttttaa
      541 attatcggaa gataaaacga taagaacagc atcaaaagta tagaagaata caaagcccat
      601 cgctgcaccg ataactattg aacatataat aatagttgca gtcagtattg taataaacaa
      661 tatgagtagt agtagcttgc ctgatcttta cccagtacaa ttattacttt tataatttta
      721 tacatatttc atttagactt tatcttcgtt atgtcaatcg tagaattatg atcaatatat
      781 ggaacaatat agtgttgttg gaacgatgat ttattgagcg aagtagaaag aaacaaagga
      841 aaaatattgt atcaaactca taagttatag aaataactga tcctctgcaa ggatataagt
      901 ccctttcatt ttatatcgac taattgattt tgtgatctct gcttttccca tttcataagg
      961 tatataattc ctgcaaacaa gaatatctct agagatttgt cgagaatgcc ggctaaatca
     1021 atttcctctg gctcatcagt aggtgagagg ggtggaggaa agataacaga gtatgtatat
     1081 aatccaagaa gtactcctgt acctacgagt ccaaacaaat tgattagtac tgtctttcgg
     1141 taatatacca ttacagaatc tctattcttg taataattag attcatttgt taaagtgatt
     1201 aatacatacg atattccata ggcgatctga gcacctccgg ctgctaacaa gaagatactg
     1261 taataaatgt ggcgtgagcc atgttctgaa aaaattgcta aatgaaccaa acctgctgcg
     1321 atcgctaaga acatgattga gtattttagc aactcttttt ctgataactt tgaatacatt
     1381 cctcttcttt ttcttctatt tctgtatgat aatcccaaga caacaccaaa tacaattatt
     1441 ggtcccgtaa ctgccataag taatgttgtg gtatagatac tgccaaaatt attagatatt
     1501 gacacattga aaaccgctct atcgcaattg caattctgag tattacccaa aatgcttctt
     1561 ggaggaccta cttcattgta attgatgata gaatcgtcgt tattattagc aacactaaga
     1621 actatttgat aattacctat ccttggaaat acatagttaa tgttgaaatc gccaatgtta
     1681 tgcaatgtcc atggatatgc tgcgactcgt tgtccattta gggtttcata aatctcaacc
     1741 atagtttcca cattgtgaac atcattaccg ttgaaatctt gtatactaaa tgtaatttgg
     1801 gttatttcat gtggacgagc gtattctgga ttcaacccta tataagcata gtattgtcct
     1861 actccgtcgc ctccaccatt ataatgagga aaatgttcaa gatgaccata tgattcacgg
     1921 attaatgagg ttgaagtata ggataaaaaa aacacagata aaattagaat agtcatagaa
     1981 atgcacagct tgaatgatat tttatcaagc atcaaattat aagatcacaa caggctcata
     2041 taactcgtac ttatacaatt gctaaaaaac actattttat cactaagtcg ttagatttgt
     2101 ctgttctata tactctaaag cgagaaatac ttgccgtaat gattgtatct attaactaga
     2161 tctcataaaa tatctgtgct ttttgtcagc agtaatgact tttcagttaa tgataaagct
     2221 atatagtgcc tacgacgaac ccaataagca aatactttga attcataagc aataaaacaa
     2281 ataaaatttt ttaattctat attgttcagt aaaatataat acggtaaagg ctacctcctt
     2341 ttcttatgtg gaaggtaatg atgccaagaa aaatagcctt cggcgaaaat gctgcgaagg
     2401 aatttgaata tccaacgaat tctttgatta taacgacaac gactcctgat gtttataaca
     2461 ggtggttaga gtatatgcaa ataagaaatt acgaagttta tgacaaggtc actcctgacc
     2521 ctgcaattga aactgttgag acaataagaa aggagtatga aggaaagaat atttcagcat
     2581 atattggtct tggtggagga agttctatgg atgtatgtaa gtatcttagc aaagtaactg
     2641 gtattccgaa gattttgatt ccaacaactt tcggtacggg agctgaaatg acaacatatg
     2701 ccgttatcag ttttgaacac aagaaaaaac tattacaaga tgagaaattt ctcgcagacg
     2761 ctgcaattgt ggatccatac tttttgcctg ggactccttt taatattatg agaaattctg
     2821 catgcgatgc agcagctcaa gcttcagaag gctatgatag taaacttgct aatccattta
     2881 caaaactctt ctgcaaagaa gctttcgata ttctggaaga tgcactcata aatgataaac
     2941 cacatctgtt gccatatggg gcaatgctat ctggaatcgg atttggaaat tcatcaacaa
     3001 cattaggtca tgcattatca tatgtctttt caaatgaagg cgtcgcacat ggatattccc
     3061 tgtcatcttg taccacggtt gcacacaaat tcaacaagtc agtatactat gaacgcttta
     3121 aaagaatttg tcagaaattg aaatttgagc cactaaaact gaaacagcca cttgatcaag
     3181 cagctgatgt aatcatgcca gatagaggtc atttggacaa taatcctgtt cctgtcacga
     3241 gagatgatat aataaaatgt ctgaacgaaa ttgtaaatag taatccattg gcctgagttt
     3301 gcaacttttt cttatttgag aatatattcg cttacttttg ttttgaaagt tatagtcaat
     3361 atgctaatat ttctctaata ttgcatgaat tatctgtttc tgaatagtct atagcgataa
     3421 ctccactatt ttatgaaata cattttcttt tttagtgaag ggtaatacag actgtagttc
     3481 ttgtaatatg gaatatacat ctctaactaa ttatcgctat tagtataatg gtatatatcg
     3541 tcttaaaaga atgataaata caatgagctt agtaacgcaa tcttataaga aacctttaaa
     3601 tccagtttat cgactttctt tgatagacta tgaccatcat tagcaagagt attgaaatta
     3661 acgctcctgt tagcgaagtg tttacttatt ttgcaaggcc tgaacatatg gcggatcagt
     3721 ttccagaaag tatgaattta aatgttattc caatagaagt aaaaaatggc tttggtgttg
     3781 gcactatttt tagaattaat ggcgattttg atggtaaaaa attagaatgg gattgtgaaa
     3841 caattgatta c
//
LOCUS       DATAAS010000309         2820 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1526405, whole genome shotgun sequence.
ACCESSION   DATAAS010000309 DATAAS010000000
VERSION     DATAAS010000309.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2820)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2820)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2820
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1526405"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(281..697)
                     /locus_tag="VHF08_05055"
     CDS             complement(281..697)
                     /locus_tag="VHF08_05055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068048.1"
                     /translation="MGEEKIENSDRPKVSSSSSELKSDYQNLVKKAANFFPKVDQNLI
                     LDILKLETTYKDWEGSVILEIKYPEGKVELDTKINKLYDKYERSASEKDERTLRFKAL
                     HMNIEELENLLKEDPEIEYISGSAEHSAKDEFPSMR"
     gene            1041..1634
                     /locus_tag="VHF08_05060"
     CDS             1041..1634
                     /locus_tag="VHF08_05060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068049.1"
                     /translation="MNRNEQKYCIILFAAVISSSLIFATSIGRTATFQGVVAQQQQNT
                     TTNTTNIISTQTNGIANQTGETVTSASMQNQTTTNQTGGGAAALANITQTDLESITED
                     LGQARQALQNNDTSGVLDELSSASEELFQVISGQFDPDHMTAIAEQFKPLQTHIDQAR
                     AAALKNDNTKTLEEINSADSELLKITQELPASEEEED"
     gene            complement(1878..2537)
                     /locus_tag="VHF08_05065"
     CDS             complement(1878..2537)
                     /locus_tag="VHF08_05065"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX2068050.1"
                     /translation="MVEEISFTGSSQNCCISFIDIVDSTRITTTEINAAEKIRKYYSI
                     FINTMAAIIRDFNATIIKNTGDSLLYYFPKTSNSANDISAFKEVFECGLTMIEASPII
                     NTKVQEEGLSSLNYRISADYGRVETARSMTSTSDDLFGPTVSLCAKINSMAAINGMVI
                     GGDLYQMTRSSFDNDYYFSKIGKYQINELKFQQYPVYSVIRNKNKENDSKSLNLYKNV
                     N"
BASE COUNT          952 a          460 c          424 g          984 t
ORIGIN      
        1 ttgcatttta acacaaatca ataatgatct tgtgattatt gttatatttg tcattaacaa
       61 caaagtaaag ttaattcttt aatcttattg ttatagcaat ataataataa caacaagaac
      121 cacccgggct tttttaagaa ttgtagttga aatgacaacc tgtcctgtta tgactgttgt
      181 tgaaattatt atttttctat tattgtgcag ggtcttggtt cttgttgata taatatttat
      241 cttgtaacag attcagatat aagagatgta tatttattga tcatcgcatt gaagggaact
      301 catccttagc actatgttca gctgatccac tgatatattc aatttctgga tcctctttca
      361 ataagttctc aagctcttcg atattcatat gtaatgcctt gaatctaagt gttctctcat
      421 ctttttccga agctgagcgc tcatacttgt cataaagctt attgatttta gtatctaact
      481 ctaccttacc ttcagggtat ttaatttcaa gaatgacgct tccttcccag tctttatatg
      541 tagtttctaa tttcagtata tccagtatta gattctgatc tacctttgga aagaaatttg
      601 cagctttttt tacaagattt tggtagtctg actttagctc agaagaagaa gacgatactt
      661 tgggtctgtc tgaattctct attttttctt cacccataat ggttaactac tgtttgtatt
      721 attctttaat gattaatatg gatacctaca agttattttc tacagatttt aatacgacat
      781 acagtacaag atgaagaata ttatgcagga caggaataaa ccaggtatta aagttaagct
      841 ggcaaattac taatgatagt aagaaccttg gaggtcagaa taataatgaa aataaaatga
      901 tgataataac tgatgataaa gaagactata agaattatct atcataaact attgctgcaa
      961 atacataaag ctttttgaaa tgtaatttag atattacctg tgcaatcatt atatattgta
     1021 tagaaacaac gatcaggtta atgaatcgaa atgaacaaaa atactgcata atattgtttg
     1081 ctgctgtaat ttcatcctca cttatattcg ctacatcaat tggaagaaca gcaacatttc
     1141 aaggagtagt agcacaacaa caacaaaata ctactaccaa cactacaaat attatatcta
     1201 ctcagaccaa tggcattgca aatcagacag gagaaacagt tacttctgct tcaatgcaaa
     1261 atcaaactac aactaaccag acaggaggag gagcagcggc gctggctaat ataacacaaa
     1321 cagatcttga atcaataaca gaggatctag gtcaagcacg tcaggcatta caaaataatg
     1381 atactagtgg agtacttgat gaattaagtt ctgctagcga agaactattt caagttatta
     1441 gtggacaatt tgatccagat cacatgactg caatagctga acaattcaag ccattacaaa
     1501 ctcatataga tcaagcccga gcggctgcat tgaaaaatga taatacaaag acattagaag
     1561 aaataaactc tgcagattct gaactgctca aaataactca agaattacca gctagtgaag
     1621 aagaagaaga ttaaactgca tgataatagt gcacattcaa ttatacgatg catgcttggc
     1681 attcaaaata ttatcgatca taatcaatgg atagggttac tatactaatc gaatttcttt
     1741 tttcttttat tgttacttaa tgtgtcaact caataaatga atcatttgtt tgtatggaag
     1801 tgacgcttca cttgttcaat tactctataa tattgattat gggtatactc ccgggatttt
     1861 agtagactat gcctctttta attgacgttt ttgtacagat ttaaagactt gctgtcattc
     1921 tctttattct tgtttcttat tactgaatat actggatatt gctgaaattt tagttcatta
     1981 atttgatatt tgcctatttt agagaaatag taatcattat caaaagaaga tcttgtcatt
     2041 tgatataaat caccacctat aaccatccca tttatagctg ccatagagtt tatctttgca
     2101 catagactca ctgtaggacc aaacaaatca tcgcttgtag aagtcattga cctagctgtc
     2161 tccactctgc catagtcagc actaatccta taattgagac tagataatcc ttcttcttga
     2221 acctttgtat taataattgg actggcttct atcattgtca aaccacactc aaatacctct
     2281 ttgaatgcag atatgtcatt agcagaattt gacgtctttg gaaaatagta taataggcta
     2341 tcaccagtat tcttaattat agttgcattg aagtctctaa ttatagctgc cattgtgtta
     2401 ataaatatag aataatattt tctaattttt tctgcagcgt ttatttcagt tgtagtaatc
     2461 ctggtggaat ctactatatc aataaaggat atacaacagt tttgtgaact gcctgtaaat
     2521 gatatttctt cgaccatata taattaatat ttcaagtctc aagacattat ataccatagc
     2581 aataaaaaat tttttatctt atcattatat agctttatta ttagtagaat ttttttcaac
     2641 tgctcctaat attctggcaa aatcgatttt ataaaccaga atttagcaat caagagatca
     2701 tttcttttta gttttaaatg ataacaaatt ctttacaaaa atagatggac tattgtatgc
     2761 tacacctatg ctagttgcaa tggcagtaat tattgaaata gcagattttg tatctgctgt
//
LOCUS       DATAAS010000310         3572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_337318, whole genome shotgun sequence.
ACCESSION   DATAAS010000310 DATAAS010000000
VERSION     DATAAS010000310.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3572
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_337318"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(376..978)
                     /locus_tag="VHF08_05070"
     CDS             complement(376..978)
                     /locus_tag="VHF08_05070"
                     /inference="COORDINATES: protein motif:HMM:NF013989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase family protein"
                     /protein_id="HEX2068051.1"
                     /translation="MINHYSYYIIIVFIQRALLSKPMRKIKLFIASSLDCYISREDGS
                     IDWLFTDDDYGYLEFYNSIDTVLMGRKTYDKALEFEQYPFRGKKCYVFSKNRIAKKKD
                     QDVEFISDIIQFVKHLIMSKGKDIWLVGGSDIISIFLNTSLIDEVILSIHPIVLAKGI
                     PLFRNIQRQLDLKLIKSISYQSGLIQLHYEIKDVTQLKDI"
     gene            2249..2401
                     /locus_tag="VHF08_05075"
     CDS             2249..2401
                     /locus_tag="VHF08_05075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068052.1"
                     /translation="MNAFDKHRKNLTAWCEDCNEVFDVLWTANMHRDQKGHKIKVTEF
                     WITGRR"
     gene            complement(2450..3379)
                     /locus_tag="VHF08_05080"
     CDS             complement(2450..3379)
                     /locus_tag="VHF08_05080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreD"
                     /protein_id="HEX2068053.1"
                     /translation="MNNLEFYIPVDIPPEVLAYDSELKQLEVGKAGKLGALTLGLEGD
                     LERGKTVVKEQYSKVPLFTQRALYLEDSIPSMAYIYIISPSGGILQGDRYRMDIKLKN
                     NAFSHITTQGATRVYRMENNFATQIVNVVVDDGCYFEFVPDQIIPYRNSRFYQTVNLN
                     VHDNATMVYSEIIVPGRVASGESFEYDICYMKALAKNQKERLRFIDIAILEPKKRNLK
                     TLGVLGSFDVVGSMYILTMAKYVAELNEAINSSLQKFFKISGGATILPYNSGVLVRML
                     GSVASDLRNAMYEVIRIIRRIILNASFSGIRKG"
BASE COUNT         1169 a          582 c          554 g         1267 t
ORIGIN      
        1 ctagatatca tcattagatg atactcataa tttcggcaga aaaagtcata gtcaaagtta
       61 ttgaagctat tttaaataaa aaatttcaaa actttaaatt atatatttaa acgtaaagta
      121 catgccaaga ggaatgaaaa aggattagat acaaagaagt ttgatagatg tgtcacaaag
      181 gtaaagaaaa aatctggtaa gcaggctaat ccttatgccg tatgtaattc aacaatgagt
      241 ggcaaaagta aaggtaagag caggaattca attaagagca aaagtaaaaa gtggctaatc
      301 aaaggcagct gagaaagtca ccgtaataat aatagtatga ttatttgcca tttttttatt
      361 attgcttgtc atctttcaaa tatctttcag ttgtgtaacg tccttgattt cataatgtaa
      421 ttgtattaat ccactttgat aagagataga ttttatcaat tttaaatcta actgtctttg
      481 aatgtttcta aaaagtggaa tgcctttggc aagaactata ggatgaatag ataaaatgac
      541 ttcatcgatt agactggtat ttaagaatat ggaaataata tctgaaccac ccacgagcca
      601 aatatctttg cctttagaca taattagatg ttttacaaac tgtattatat cagagataaa
      661 ttctacatct tgatcttttt tcttggcaat gcgattcttg ctgaatacat agcacttttt
      721 acccctgaat ggatactgtt caaattccaa agctttatcg taggtttttc tacccataag
      781 aacggtatct attgagttat agaattccaa ataaccataa tcatcatcag taaacagcca
      841 atctatactt ccatcttctc ttgatatata acaatcgagg ctagaggcta taaacagctt
      901 tatctttctc atgggttttg aaagtaatgc gcgctgaata aaaactataa ttatataata
      961 cgaataatgg ttaatcatga ctactgaatc gtagagacaa caagtaatct atattactaa
     1021 aggagaaaac tttgttaagg tgctataaga gttggatccg atcttgatat ttgataagca
     1081 tataaacgta ttaaatcaac aatgagatga gcttatgata caaaacatat ctgttcttca
     1141 tttattctat atataagaca catcaatatc tgactttttt catctagatc acatttagga
     1201 gatgcagctt gtttgtgctg tgtattagaa tccttgcaat aatatttcaa tgaattatct
     1261 ccgcaggaga ttgagccaaa cattcttctt ctttacctct tcccattcat ccgttctctg
     1321 aatctttcac tttctcatat agaggttaaa caaaatgaat actcatatta tagtaaccaa
     1381 tgatattgga aatgacaata acagagatat agcaattctg atttctaaag gtattcctaa
     1441 ccacattatt tggttaagga gaagttgttt gtgctatcgg agcacatttt tcttatacta
     1501 tatatatata tatatatata tatattatca tttttataaa gtactttatt ttctggtttg
     1561 gtaattgtta ccttattaca tgatattcta acttgactct aatttcatgg atttgctgtc
     1621 attaatctat cttgattctg cgttcttttt caagtattct ttatcttttg gactgctttc
     1681 tgatgtcatt ttcgttattc atctcctaag atttagcgat agccaaacac ggcataggag
     1741 aagactttga tgggtagtca tgcatgttta aaaattaagt aaaattactc ttcttacacg
     1801 tttaatttac tttttaatag agtataatca tacttttgaa atgagttacg gacttttttc
     1861 tatgttttgt tggattaaat tttatattcc aatggctcag tttttttgtg tgtatacgta
     1921 taggtaataa actgttccat aattatcaaa tcttctaaga aaaactaata aggaatttac
     1981 tatctcgata ttgcttcgct ctttttttgc tgaatttatg agaagagatt ccattatttt
     2041 ctgttgttgc atgtgtacag tatgaccaga agtcgaagag cttctactaa gggatgaatt
     2101 tgtggatgca atgacccact ataaataaga tataatagaa aaagtcaaat tatgctatat
     2161 tgaatactaa aatgttttac agggaaattc attatcagtt ttgtatcgta tttataactt
     2221 tttatatcaa attttgttat attaaaacat gaacgcattt gataagcaca gaaaaaactt
     2281 gacagcttgg tgtgaggatt gtaatgaagt atttgatgta ttatggactg ccaatatgca
     2341 ccgcgatcaa aagggacata aaataaaagt aacagaattc tggatcacag gaagaagata
     2401 gaatatatag ctatgatagt tgtttccaaa attaaaaatg tttgttatcc tagcccttcc
     2461 ttattccgct aaaggacgca ttaagtatga tccttcttat gattcttatt acttcataca
     2521 tagcatttct aagatcacta gcaacactgc caagcattct gactaaaacg ccagaattat
     2581 aaggaaggat tgtcgctcct cctgaaattt taaaaaactt ctgtaaactt gaatttatcg
     2641 cttcatttaa ttctgctacg tattttgcca ttgtaagtat gtacatgctt ccaacaacat
     2701 cgaaactacc aagtactcca agtgtcttca agttgcgttt cttaggttcc aatattgcga
     2761 tatctatgaa ccttagtctc tccttttgat tctttgccaa agctttcata taacaaatat
     2821 catattcaaa tgattctcca ctcgcaaccc tacctggtac tatgatttca gaatatacca
     2881 tggttgcatt atcatgaaca ttcaagttaa ctgtctggta aaaacgagag ttcctgtaag
     2941 gaattatttg atcaggaaca aattcaaagt aacagccatc gtctacaact acattcacta
     3001 tctgtgttgc aaaattattc tccattctat aaactcttgt tgcgccttgc gtggttatat
     3061 gggaaaatgc gttattcttc aattttatat ccattctgta tctatctcct tgaagtatgc
     3121 ctccagaagg agatattatg taaatgtatg ccatcgaagg tatggaatct tcaaggtata
     3181 atgctctctg tgtgaacaaa gggactttcg aatattgttc tttgacaaca gtttttcctc
     3241 tttctagatc tccctctaat cctaatgtca gggctcctag ttttcctgct tttcctactt
     3301 caagttgttt taactctgag tcatatgcta atacttccgg aggtatatct accggaatgt
     3361 agaattctaa attgttcatt aatatattat aaccttgtca ttttgcaata gcctttggag
     3421 gggactcaaa gagaacatct cttattatat gctctgttac ctctttgaat cccctccaaa
     3481 ggcgattgca aaatgacaag gtcataatat attaatgaac aacttagaat tttacattcc
     3541 ggtagatata cctccggaag tattagcata cg
//
LOCUS       DATAAS010000311         3212 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3572834, whole genome shotgun sequence.
ACCESSION   DATAAS010000311 DATAAS010000000
VERSION     DATAAS010000311.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3212
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3572834"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..998)
                     /locus_tag="VHF08_05085"
     CDS             complement(<1..998)
                     /locus_tag="VHF08_05085"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEX2068054.1"
                     /translation="MNLLFIIIAASVVIAAGAATIFVTPFDTTIPLPEPNKTLNNNGT
                     NSGILIVAENLEVPWSIDIAKDGRIFFTEREGRIRIIDAQSNLIDDPAASIRVEQTGE
                     GGLLGLALHPNFTENHLLYVYHTYANKSKLYNKVLMLTENENKIIESKVIIDSIPGAQ
                     FNDGGSIKFGPDGKLYISTGDATIPELAQNVKSLAGKILRLNPDGTIPDDNPFLGSPV
                     YSYGHRNIQGIAWHSQTKQLYATEQGGPSGNDEINVIKAGSNYGWPIEECKGSGKYEA
                     SEFCFNPSIAPTGVTISINDKLGYQNDLIFATLKGSHLRHIDLESKTQSNILVGYG"
     gene            1062..2162
                     /locus_tag="VHF08_05090"
     CDS             1062..2162
                     /locus_tag="VHF08_05090"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX2068055.1"
                     /translation="MKVSEINANKVIMLSSEDSVAKALNMMYENNINQIPIIDANDDG
                     KYIGMIYAKQFLGVNATPTSKLKSFVVNTPVLNSDDDIEKCAQLIVVTGNRALPVIEN
                     GKLISIVSETDVVLTSDFGNAIVDEVMSGAIVIEEDDTLSNALSKMRRYNISRLPVIN
                     SQGILIGAMNALDIAKIIATPRERAGKSRGIGTMVTIREVKLKDIMRRAVSVERGTSL
                     NSVIEKFEKTGEIIVVGDGRPIGIITPKDALELTLPKTTEPSIHIAHLDSDEARQEIE
                     EQMTKFLKKIQGRLEHVRLAIVYADKHKTHKYSVRARVITTTGVVAAKAVGYDPLSAC
                     KELVSRLDRRIKSEHSQKIKDRQQRESARKVS"
     gene            complement(2179..2310)
                     /locus_tag="VHF08_05095"
     tRNA            complement(join(2179..2229,2248..2310))
                     /locus_tag="VHF08_05095"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2249..2251),aa:Ser,seq:tga)
     gene            2798..>3212
                     /locus_tag="VHF08_05100"
     CDS             2798..>3212
                     /locus_tag="VHF08_05100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegT/DnrJ/EryC1/StrS family aminotransferase"
                     /protein_id="HEX2068056.1"
                     /translation="MACGFSFTNNYSIEKSDHLCFIVTANLSSGKEAMIPINKPWIEE
                     EERREVLNVLEENALTDASRNGGKRVQDFEAQLRDYLDVKYVIAVNSGTSALHAALLG
                     VNIKQDDEILLPSFTFVATANSVVAAGAKPVFVDIN"
BASE COUNT         1071 a          531 c          617 g          993 t
ORIGIN      
        1 ctaccatatc caacaagtat gttgctttga gttttagatt ccaaatcgat atggcgtaaa
       61 tgtgaaccct ttaaagtagc gaaaataaga tcattttgat atccaagctt gtcattaata
      121 gagattgtaa ctccggttgg agcaatgcta ggattaaaac aaaactctga tgcttcatat
      181 ttgccagagc ctttacattc ttctatgggc cacccgtaat ttgaacccgc ttttatgacg
      241 ttaatttcat cattgccaga aggaccgccc tgttcggtag catatagctg ttttgtttga
      301 gaatgccatg ctattccttg aatatttcta tgaccgtacg aatacacagg agagcctaga
      361 aaaggattat catcaggaat ggttccatca ggattaagtc gcaagatctt gcctgcgagt
      421 gatttaacat tttgtgcaag ctctggaata gttgcatcac cagttgatat gtataatttt
      481 ccatcagggc caaactttat acttccacca tcattaaatt gtgcacctgg aattgaatca
      541 ataatcactt ttgattcaat aattttattt tcattttcag tgagcattag aactttattg
      601 taaagtttgc ttttattggc atatgtgtgg tagacatata acagatgatt ttcagtaaaa
      661 tttggatgca atgctaggcc taataggccc ccttcgcctg tttgttcgac acgaatgctt
      721 gctgcaggat cgtcgataag attactttgg gcgtcaatta tccttattct accctctctt
      781 tcagtaaaaa aaattctacc atctttcgca atgtcaatag accatggaac ttcaagattc
      841 tctgctacta taagtatgcc gctgttggtg ccattattat taagagtctt attaggttca
      901 ggtaacggaa tagtagtatc aaatggtgtt acaaaaattg tcgcagcacc agcagcaatt
      961 actacagatg cagcaataat gatgaagagc agattcatta taatgatatt ttagagatgg
     1021 taaggttttt taatgtaatc tttaagatcc aaagatccat aatgaaagta tctgaaatta
     1081 atgctaataa agttatcatg ctaagttcag aagattcagt tgcaaaagct ctgaatatga
     1141 tgtatgaaaa taatattaat caaataccaa taattgatgc taatgacgat ggaaaatata
     1201 taggcatgat atatgccaag caatttcttg gcgtaaatgc tactcctacg tcaaaattaa
     1261 agagttttgt tgtcaataca cctgttttga attcagacga tgatattgag aaatgtgctc
     1321 aactaattgt agtaactgga aatcgtgcat tgcctgttat tgaaaacgga aaactgatta
     1381 gtattgtgag cgaaaccgat gtagtactta cttcagattt tggtaatgct atcgtagatg
     1441 aagttatgtc tggagctata gtaattgagg aggatgatac attaagcaat gcactatcaa
     1501 aaatgcgtag atataacatt tcacgacttc cagtcattaa ttcgcaggga attcttatag
     1561 gtgctatgaa tgctttagat atcgctaaaa ttattgctac acctagagaa agagctggaa
     1621 aatcacgagg aattggcacc atggttacta ttagagaagt caaacttaaa gatattatga
     1681 gaagagcagt atcagttgaa aggggaacca gtctcaacag tgtaatagaa aaatttgaaa
     1741 aaactgggga gattatcgtt gttggggacg gaaggccaat tggtataatt acacccaaag
     1801 atgcgttaga actgacactt cccaaaacaa ccgagccttc tattcatatt gctcatctag
     1861 acagtgatga agcacgtcaa gaaatagaag aacaaatgac aaaattcttg aagaagattc
     1921 aaggaagatt agagcatgta cgccttgcaa tagtctacgc cgacaagcat aagacacata
     1981 agtattctgt gagagctagg gttatcacta ctactggtgt ggttgctgca aaggctgttg
     2041 gttatgaccc attgagtgcg tgtaaggaat tagtatccag attagataga agaataaagt
     2101 ctgaacacag tcaaaaaata aaggatagac agcaaagaga atctgccaga aaagtatcct
     2161 agataacaaa agaaaagatg gcgcagatga ggagatttga actcctgatc gcccgagggc
     2221 gaatcggctt actttcagcc attgatactc aaggccgacg cattattgtg ttctttattt
     2281 tgagaaggaa gaccactctg ccacatctgc tcttattatt atcacctagt tacctactat
     2341 tatgtgttaa ctgcatcatg aaacacaagg aatgcagtat ctttaatatt taatatgaga
     2401 tattcttgta atagatacaa aatcaggggt aaaatccaat gtttaagata gtctgaattc
     2461 atctgctaaa atcacaatat tcaaaagcaa tgttaggcaa gacaatgaaa agaaagaaat
     2521 ctatcagaca gaccatgata tattgagaag atcttcgagt aattggacag attacaaaag
     2581 cctgctgatt actatagtct gttatttgat ttatccacat ttcattcaaa ctattttata
     2641 cttctctttt gcttagataa aattaaaggc tcatatttcc taatctttct atgttttaaa
     2701 aacagacttg ctgtcttttg atcttgatct gcgaagataa taagtaatct ctttaagaaa
     2761 gtccacatac tgcaacattc ttgttgttgt attgtgtatg gcctgtggtt ttagttttac
     2821 aaacaattat agcatagaaa aaagtgatca tttgtgcttt atagtgactg ctaatttatc
     2881 ctcaggcaaa gaggctatga tacctattaa taaaccttgg atagaagaag aagaaagacg
     2941 tgaagtattg aatgttctag aagagaatgc tcttacagat gcatcacgca atggaggaaa
     3001 aagagtacaa gattttgaag cacaattaag agattatctg gacgtaaaat atgttatagc
     3061 tgttaattca ggaacctctg cattacatgc agctttactt ggtgtaaata tcaaacaaga
     3121 tgatgagatt ttacttccat catttacgtt tgttgctact gccaactccg tagttgcagc
     3181 tggtgcaaag cctgttttcg tcgatatcaa ta
//
LOCUS       DATAAS010000312         2446 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4118621, whole genome shotgun sequence.
ACCESSION   DATAAS010000312 DATAAS010000000
VERSION     DATAAS010000312.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2446)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2446)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2446
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4118621"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1657)
                     /locus_tag="VHF08_05105"
     CDS             complement(<1..1657)
                     /locus_tag="VHF08_05105"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX2068057.1"
                     /translation="MIQNVEEQILYNLLNFLGVPIFFHHGDLFVGNGVLPIDITLPIY
                     SQLLFLTFFPTIAITSRITFKMRAKILSFGLLYIIVSIVLQFLTIVTMLAFDIKPSSV
                     AFKATSIAVTILSGGAIIEAALFSNITIPSPTKIKSIIKRNYVKEYAYLVGILASSCI
                     MVYFIITFLQIEKDSIINGFILINLYLTLSSIMFFSYFLANFIYEIRQRSNWLKRISL
                     SNRDDKPLSISFLIPAYNEEKIVGRCIESIDRAAERYAGKTEIVLINDGSTDNTEKIV
                     AEAIGKLKYCSGKFYTIPNSGKGFALMYGLEKTSGDIIFRTDADSVMDENLIQPMINH
                     YKDSQVGSVCGWIFPLEDKSLWQKVQNVLCANYFYTKRGQEIVDAIITQPGSSTSFRR
                     EAVLKAGGWITNIFGEDGEITNRIARFGYKGKFEQRSIVYTEHPESLIGLMQQRARWG
                     VAFYHSRGRNLRLVGEYRYPRSIVFTWNLIAHGLGLGKSLIWPYFVASILTGYINISL
                     SEVPFSLLIKLIAIQLVITVILLIIYAHRLDKVNKVSDIWYFPF"
     gene            2243..>2446
                     /locus_tag="VHF08_05110"
     CDS             2243..>2446
                     /locus_tag="VHF08_05110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068058.1"
                     /translation="MVMAVQAVEMKEGEEKQDSVAFTATALSSGFNFAAVGDWACTSH
                     TTDTINNIVDKNPELVLGLGDYSY"
BASE COUNT          865 a          411 c          382 g          788 t
ORIGIN      
        1 taaaaggaaa gtaccatata tcactaacct tatttacctt atccaaacga tgagcatata
       61 ttataagtaa gattacagta attaccaatt ggattgcgat taatttaata agtagactaa
      121 atggtacttc agataaggaa atatttatat agcctgttaa aattgatgct acgaagtacg
      181 gccatatcag gctttttcct aatcctagac catgagctat taaattccat gtaaatacaa
      241 ttgatcttgg atatctatat tcgcctacaa gtctcaaatt ccttccccgt gaatgataaa
      301 atgctacacc ccatctcgca cgttgttgca ttagaccaat taggctttct ggatgttcag
      361 tatatacaat agaacgttgt tcaaactttc ccttataacc aaaccttgct attctatttg
      421 tgatttcacc atcctcacca aagatattag ttatccatcc ccctgctttc aacacagcct
      481 ctcttcgaaa tgaagtagaa gatccaggct gagttattat tgcatcaact atttcttgtc
      541 ccctttttgt atagaagtaa ttagcacaga gtacattctg aaccttttgc catagacttt
      601 tatcttctaa tggaaaaatc catccacaga cggatccaac ctgagaatct ttgtaatgat
      661 ttatcattgg ctggattaaa ttttcatcca ttacagaatc tgcatctgtt ctgaatataa
      721 tatcgcctga tgttttttct aatccgtaca tcaatgcaaa ccctttccca gagttaggaa
      781 tagtgtagaa tttaccactg caatacttga gctttcctat agcctctgca acaattttct
      841 ctgtattatc agtggaacca tcgttaataa gaactatttc agtcttacct gcataccttt
      901 cagctgctct atcgatactc tcaatacatc ttccaactat tttttcctca ttataagccg
      961 gtataagaaa agatatggat aagggcttat catcccgatt ggacaaactg atacgcttta
     1021 accaattcga tcgctgtctt atttcataaa taaaatttgc taaaaaatag ctaaaaaaca
     1081 ttatagaaga gagagtaaga tataaattaa ttagtataaa cccatttatt atagaatctt
     1141 tctctatttg caaaaaagtt atgataaaat aaaccattat acaagagctt gctaatattc
     1201 cgactaaata tgcgtattct ttgacataat ttctttttat tatcgattta attttggtcg
     1261 gtgaaggtat agtaatatta gaaaaaagtg ctgcttcgat gattgcgccc cctgataata
     1321 ttgtaacagc tatgctcgtt gctttaaatg ctacagaaga tggtttaata tcaaatgcaa
     1381 gcatagtaac gatagtcaaa aattgaagta caatagaaac aattatgtat agtagtccga
     1441 aagatagaat ctttgcacgc atcttaaaag tgattcgtga agtaattgca attgtaggaa
     1501 aaaaggtaag gaaaagcaat tgtgaatata tcggcaatgt gatgtcaata ggtaaaacac
     1561 cgttaccaac aaagagatct ccatgatgaa aaaaaattgg tactcctaag aagttaagga
     1621 ggttatacaa tatttgctct tctacatttt gtatcaaact aaagtagttc aagaagaggc
     1681 atgcaaaaaa taaagcacat atatagtatc tcaatggata ataaaacggt aaccgcttta
     1741 acacaagttg tatacgtttc aaatttatta gaggtttatc gaccctatca tgactttggc
     1801 gatacacatt cgttcaatta tcaacgtcag tgatatttgt atatttctat aagtgtgatt
     1861 tagtagtaaa aactaattgt taccgccttt tttgcaaaga taatagttca tattcaaaat
     1921 aaaaaagaat atttaactta gatttgatat ttgacattag aagaattata aagaatatgc
     1981 ttcttttgca ttgttgcata aatgactcat ccattattgt ggttcgacga ttgagataac
     2041 tagtaaaata cagagaaaat atataataaa agaaaagaac ctacagttaa agccctaata
     2101 aaggaaaacg cattttgtat attaaggaaa ttgtagaact tgttaataag aagtaattca
     2161 cagactaaat gattcaggac aaaacatgat tagaaggcga agaaaaacct tagtttttca
     2221 tgtgattttt tctctaatat gtatggttat ggctgtacag gcagttgaaa tgaaagaagg
     2281 agaagaaaaa caagattctg ttgcatttac agccacagcc ctatcttctg gttttaactt
     2341 tgcagcagta ggagattggg cttgtacatc tcatacaaca gataccataa ataacatagt
     2401 agacaaaaat ccagaactag tactaggatt aggtgactac tcatat
//
LOCUS       DATAAS010000313         1886 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3037783, whole genome shotgun sequence.
ACCESSION   DATAAS010000313 DATAAS010000000
VERSION     DATAAS010000313.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1886)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1886)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1886
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3037783"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            100..834
                     /locus_tag="VHF08_05115"
     CDS             100..834
                     /locus_tag="VHF08_05115"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2068059.1"
                     /translation="MFKNLFKKIDEVLGLEDEPSLPPEEKFFSDVVGYHDIKKLFMKS
                     IVSKEPIHILLTGPPASSKTIFLLEMMEGLDHAYFIDAVGASGAGMISYLFSNDTKYL
                     LIDEIDKLKKSDQVTLLNVMETGILSETKKGRTRQKKMYLSIFATSNEISKLSKPLRS
                     RFMELHLEEYTFEEFMEITRRLIVKRYHLDIPIAEKIGYSVWNKMKSKDIRDVIQIAK
                     LTKSLSDVDWLVDVQMKYGKKRHDSD"
     gene            1145..1654
                     /locus_tag="VHF08_05120"
     CDS             1145..1654
                     /locus_tag="VHF08_05120"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEX2068060.1"
                     /translation="MSIKVTLATIAIIVALGSITANGFINSALGQQTFTAELTGGDEV
                     PPVDTEATGTFNLVTVNQSSGYLLSVDELANATAAHIHRGEEGVNGKIVVTLYNATMP
                     ASISQGLLSQGNITAANLEGPLAGQQLADLIDIMDNGTAYVNVHTKDFPLGEIRGQIS
                     GEGEADEEG"
BASE COUNT          715 a          279 c          321 g          571 t
ORIGIN      
        1 ggatgtacgt atgtgattca aaatgttcag aactcaaacc acagccttta atacattctc
       61 tcataaatat aatagttaaa ataaaaaggc aagataaaag tgttcaaaaa cttattcaag
      121 aaaatagacg aagtacttgg attagaagac gaaccaagcc ttcctccaga ggaaaaattc
      181 ttttctgatg tagtaggata tcacgatata aagaagctat ttatgaaatc aatagtatct
      241 aaagaaccca tacatatatt attgacagga cctccagcct cttctaaaac aatttttcta
      301 ttagaaatga tggaaggatt agatcatgcg tattttatag atgctgttgg tgcttcaggt
      361 gctggtatga ttagctatct tttcagtaat gatactaaat atctgttaat cgatgaaatt
      421 gataagttga agaaaagtga tcaggtaaca ttgctcaatg tgatggagac aggcattcta
      481 tccgaaacta aaaaaggaag aacaagacaa aaaaagatgt atttatcgat atttgcaaca
      541 agtaatgaaa ttagtaaatt atcaaagcca ttacgatcca gatttatgga attacattta
      601 gaggaatata cctttgaaga atttatggag attacaagaa gattgattgt aaagagatat
      661 catttggata taccaatagc agaaaaaatt ggctattcag tatggaataa aatgaagtct
      721 aaagatatta gggatgtaat acagattgca aaattaacta aatcattatc tgatgttgat
      781 tggttagtag atgttcaaat gaagtatggt aagaaaaggc atgactcaga ttaaaagtat
      841 tgtatattgt cattccttcc aaaataacga ttgttagata taattacatc tacatataat
      901 ttcccatatt tgatgatgcg attatctgaa agtaataaaa tatcagatga ataggttatg
      961 atcatcattt ccaagatatg agcaaaagca caaattgatg acaacaaata caaattcttc
     1021 ttgctgacta caaaacaaca aagatagaaa atagaccata attacctgta ttaagacatt
     1081 aactatatct aaagactatt aataataaca tatagttatt aattatattg tttagataat
     1141 acgtatgtct atcaaagtaa cactagctac aatagcaatt atagtagcac tggggagcat
     1201 aacagcaaat ggttttatca attcagcact tggacaacaa actttcactg cagaacttac
     1261 aggaggcgat gaagtaccac ccgtagatac tgaggcaaca gggactttta atcttgttac
     1321 tgttaatcaa tcatcaggct atctattaag tgtcgatgag ttggccaacg ccacagcagc
     1381 tcatatacat agaggcgaag aaggagtaaa tggaaagatt gtagtaacgc tatacaatgc
     1441 taccatgcca gcaagtatat cacaaggact tttgtcacaa ggtaacatca ctgctgccaa
     1501 tctagaagga ccattggccg gacaacaact agcagatcta attgacatta tggataatgg
     1561 aacagcatat gttaatgtgc atacaaagga ttttccactg ggagaaattc gcggacaaat
     1621 ttcaggtgaa ggagaagcag atgaagaagg ataattcaaa gactttattt tagactttag
     1681 aatgttgtca tacatttctc tttttttcat ttttcatatt ataaaaacct acgagtacct
     1741 ttccaattgc atgcttgtca ataactatta ctaatataca agataaaact aaaaataata
     1801 ttattaaatt tcgttaattt acccataatc tttcgaatat acacctttgt gcgctcttgt
     1861 cagtttattg ttaggtttta cttaga
//
LOCUS       DATAAS010000314         3538 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4669591, whole genome shotgun sequence.
ACCESSION   DATAAS010000314 DATAAS010000000
VERSION     DATAAS010000314.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3538)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3538)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3538
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4669591"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            405..1019
                     /locus_tag="VHF08_05125"
     CDS             405..1019
                     /locus_tag="VHF08_05125"
                     /inference="COORDINATES: protein motif:HMM:NF024635.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2068061.1"
                     /translation="MREHRWEEQLKSQIKLAITGNPGVGKHTSVKFVSEKLGGVKIID
                     INKVIIDNNAFTLNDDQYGIEVDIKKTLKLITEELKKGEDLVIIGHLVPYVVKPDIID
                     LVIVMRRSPYELIKTFEDRGYLPEKLRENVASEILGVSFYDALKTFGKNKIAEIDATG
                     KIPQQCAEEIVLLLQKKLKHEIGVVDWLSLVYEKGDVQKFLEYY"
     gene            1190..1603
                     /locus_tag="VHF08_05130"
     CDS             1190..1603
                     /locus_tag="VHF08_05130"
                     /inference="COORDINATES: protein motif:HMM:NF026244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lsm family RNA-binding protein"
                     /protein_id="HEX2068062.1"
                     /translation="MSAVLSRRFGEETIQFLGKKVSIETSDQKIYNGTLTGIDEKLDV
                     ILDNIEGHGILKLILNGSFVKEIKLMEKPFDFKALSDRLSRVFPGLVKIREDVGAIIV
                     MDKIKLTKTGIEEGSGLAADRVKAIYDEFVRETKK"
     gene            1606..3231
                     /gene="tgtA"
                     /locus_tag="VHF08_05135"
     CDS             1606..3231
                     /gene="tgtA"
                     /locus_tag="VHF08_05135"
                     /EC_number="2.4.2.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016763 - pentosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(15) transglycosylase TgtA"
                     /protein_id="HEX2068063.1"
                     /translation="MSFEVRYTDLAGRIGKLKTPHGSFETPAFIPVIHPVKQTITPQF
                     LKALGFNAVITNAYITLRHYGDEARKRGIHDITKYDGVIMTDSGGYQVLEYGSIDVEP
                     AVIAKFEQDIRSDISVPLDKPTGYGLKYEKAKDYVEQTLKNARETLNVIEEGRESKRI
                     KNNTGNEYHNDDDINGTIWVGPIQGAEHSDLVKYSADALDKMGFNLLAIGSPVELMEA
                     YEFSLLAHMIATVKRTIPAKPIHLFGAGHPITIPLAVALGCDMFDSASYILYAKDNRY
                     MHSNGTSRLEDLSYLPCQCPICTTYSIKELFNMDKDNRTLEIAKHNLYILKAEVNAVK
                     QAIMDGRLWEYVMQKAHAHPKLMEAMELFKTFEYLEEGTPIFKEKAVFLYDPIDQYRP
                     EVKRFRNMVSTFASLKNKERKLILYPDSDIHPFYSTGVFFQLIKKFPDAQICTYNPFF
                     GIIPSEISDIFPAAHNLSCKKPANHTHPKNYPSFIESLDRFIVNNNFEEIIIIADNFM
                     RQIVDDNFYNNIPTIKKLNPKVYDYDYNIITKL"
BASE COUNT         1316 a          537 c          632 g         1053 t
ORIGIN      
        1 caaaaggctg ggaagaaggc taaactacct cttccactag aagaactcca aatacaaaat
       61 actactttcc ttttttaaat ttttaaatgt tttttggaat aagcatttaa gtaaatatat
      121 attttatctt aaaataagag gcttaataaa agaataatag acacatatgg ttaaaattat
      181 taaagtatct tacggtcata gaaatccaag tttttgtttt gactttaccc aattaagatc
      241 aacacgatct tatatctgaa tatgctgaag tagcgctaga acaacagttg attgatttat
      301 ataagttggc ggccgcctta ttattttgac gatgggactg acgaaattgt agacccgatg
      361 agttaataaa atatttgatt attaattgaa atataaacga gaatttgcgg gagcatcggt
      421 gggaagagca attgaaaagt caaatcaaac ttgccatcac gggtaatcca ggagttggaa
      481 agcatacaag tgttaaattt gtatcggaga agttaggagg ggtcaaaata attgatatca
      541 acaaggtcat tatcgataat aatgctttca cactaaatga cgatcagtac ggaatagaag
      601 tcgatataaa aaagacatta aagttgatta cagaagaatt aaaaaaagga gaagacttag
      661 taattattgg acatcttgta ccttatgtgg taaagccaga tataatcgat cttgttatag
      721 ttatgcgacg ttcaccctat gaactaataa aaacttttga agatagagga tacttacctg
      781 agaagctcag agagaatgta gcaagtgaaa tcctaggtgt ttcattttac gatgcattaa
      841 aaacctttgg aaaaaataaa attgcagaaa tagatgcaac tggaaagata ccccaacagt
      901 gtgccgaaga aatagtttta ttgttacaaa agaaactaaa acatgagatt ggtgtagtcg
      961 actggctctc attggtctat gaaaaaggtg acgttcagaa atttcttgaa tattattaaa
     1021 tccctaatct atttcttctt catgagtaca ttttgatcta tagaatggat aatgtaagtt
     1081 tatcatattt gctctaattt ttaagagtag ttgatcaaac tagatatcag aaataaaata
     1141 ttgaaattca tatatatatt acattaagca tattctgata agaatattta tgtctgcagt
     1201 actgagtcgg agatttgggg aagaaacaat acaattccta ggcaaaaaag tttctattga
     1261 aacttctgat caaaaaatat ataatggcac gctaacaggt attgatgaaa aactcgacgt
     1321 catacttgat aatatagaag gtcatggaat cctcaaatta attcttaacg gttctttcgt
     1381 taaagaaata aagctcatgg aaaaaccttt tgattttaaa gctctatcag ataggctttc
     1441 tagagtattt ccaggtttag taaagattag ggaagatgtt ggagcaataa ttgtaatgga
     1501 taaaatcaaa ctcacaaaga caggtattga agaaggttct ggacttgcgg ctgatagagt
     1561 taaggcaata tatgatgagt tcgtaaggga gacaaagaag taaaattgtc cttcgaggtc
     1621 agatatactg acctggctgg ccgtatcggt aaattaaaaa ctccccatgg cagttttgaa
     1681 actcctgctt ttattcctgt catccatccg gtaaagcaga caataactcc acaattcctt
     1741 aaagccttgg gctttaatgc agtcatcact aatgcttaca taacattacg acattatggt
     1801 gatgaggcaa gaaagagagg aattcatgat ataacaaaat atgacggagt gataatgaca
     1861 gactctggag gatatcaagt tttggaatat ggctcaattg atgtggaacc cgctgtcata
     1921 gctaaattcg agcaggatat tcgaagtgac atttctgtgc ctcttgataa acctacaggt
     1981 tatggactaa agtatgagaa ggcaaaagac tatgttgagc agacacttaa aaatgcgaga
     2041 gaaactctta atgtaataga agaaggaaga gaaagcaaga gaatcaaaaa caacaccggc
     2101 aatgagtatc ataatgatga tgatataaac ggcacaattt gggtagggcc aatacagggt
     2161 gctgaacatt cagatttggt aaaatactca gccgatgcac ttgacaaaat gggtttcaat
     2221 cttttggcta ttgggagccc tgtagagtta atggaggcat atgagttttc actactagca
     2281 catatgatag ctacagtaaa acgtactatt cctgcaaaac caatacatct tttcggagca
     2341 ggacacccca tcacaattcc cttggctgtt gcgttgggat gtgatatgtt tgattcagcc
     2401 tcgtacattc tctatgctaa agataatcga tatatgcatt caaatggtac ttcaaggcta
     2461 gaagaccttt catatcttcc atgtcagtgt ccaatttgta ctacttattc tatcaaagag
     2521 ttgtttaata tggataaaga taaccgtaca ctagaaatag caaaacacaa tctctatatt
     2581 ttgaaagcag aagttaatgc agtaaaacaa gctataatgg atggcagatt gtgggaatat
     2641 gtaatgcaaa aggctcatgc acatccaaaa cttatggaag caatggaact tttcaaaacc
     2701 tttgaatatc tagaagaagg aacaccgata ttcaaagaga aagcagtatt tctctatgat
     2761 cctatagatc aatatagacc tgaggtcaag cgattcagaa atatggtatc cacatttgca
     2821 tcattaaaaa ataaagaaag aaaattaata ttatatccag actctgatat ccatccattt
     2881 tattctaccg gagttttttt tcagctcatc aaaaaatttc ctgatgcaca gatttgcacc
     2941 tataaccctt tttttggaat tattccttca gaaataagcg atatatttcc agctgcacat
     3001 aatttgagtt gtaaaaaacc agcaaatcat actcatccca aaaattatcc aagctttatt
     3061 gaatcccttg accgattcat tgtaaacaat aactttgaag aaataataat aatagcagat
     3121 aatttcatgc ggcagatagt tgatgataat ttttataata acataccgac aataaaaaaa
     3181 ctaaatccaa aagtttatga ttatgattat aatattatta ccaaattata attataaaat
     3241 atactttttg ttatatagct atctaaagaa ctattaatta atattataaa agcatcgaat
     3301 gctagaaaat ggcataagaa aataggaata tctctgaatg ataatgagaa tccgaaaatt
     3361 acactggcgt atgaaatgaa gagtcataaa ggagcatata gaaagtacaa ttagttacat
     3421 atctctagtc tagagtaata tctcctgaaa taactctata gatttgtcaa aattcatatt
     3481 aaaaaggaat aagtagagcc ccccatccag aatttttata atatcaccaa aattgtat
//
LOCUS       DATAAS010000315         2569 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4124263, whole genome shotgun sequence.
ACCESSION   DATAAS010000315 DATAAS010000000
VERSION     DATAAS010000315.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2569)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2569)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2569
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4124263"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1030..1257)
                     /locus_tag="VHF08_05140"
     CDS             complement(1030..1257)
                     /locus_tag="VHF08_05140"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068064.1"
                     /translation="MQRSADKRIREYNISKLKLTCGNPTWINQDDEHSCSNPTKYYHQ
                     QHHYQFPFLLAGREMCLWIYLIVRKYLYKDK"
     gene            complement(1331..2410)
                     /locus_tag="VHF08_05145"
     CDS             complement(1331..2410)
                     /locus_tag="VHF08_05145"
                     /inference="COORDINATES: protein motif:HMM:NF015983.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX2068065.1"
                     /translation="MVVDTIRTIKLLGKWSGNRAIGRKRPLIAVFSLTHYCNFYCPMC
                     PFGDSDKTGQIQFAKKNDLSTEKWKLIFDKVSKYCIWSIIEGGEPTSRPDFMELVRYL
                     YNLNLPITLISNCSLLHTIDLNELKKYIEFITCSIDSVFEEPYCKVRGVSSQMYQRVM
                     DNLNLLTEHKVPHYFNSVITKYNTEEFIDQSYFDRAKELGSNAVSFTFVEDRSDVNYS
                     LLPDRQTMIKVCKSILDYGKKHVSPRIMIPPQYFEQIIKYGRGVFDECGVWKSVFVNG
                     NGTVMVPCWKFNKTENIYNLLEKSIDEIWSAPQWDIAMTCKDCKVLGCIWYSSQPVTT
                     FAQNYMKGISKMINQQRPELAAELS"
BASE COUNT          854 a          388 c          403 g          924 t
ORIGIN      
        1 aatattgaaa tatcttttct tctaatgaag agaaccacta tatatatata tatatatata
       61 gtggttctct tcattagaag aaaagatatt tcaatatttc tctatatttc taagattaat
      121 ggtgaaatta cggttcatta gatttgatag taagatttaa agatttaacc tatatctatt
      181 atggtatagt acatactcta atgaatatct gctctatatg cggagttgaa aacacggtaa
      241 actattcttg tgagcacaca aatgagaatc aaatgtgcaa ggaatgttat cagtatattc
      301 attggcttct taatagcaat attcctgaaa atcaaaaaga aagttagaac tataaactaa
      361 agtggtagtg aatttatgat aagaattctt atgcttacac aagatatggt tctttgaatc
      421 aatacaagtt attatactgt attggattta gtaaattaac aacactaaat tagggactat
      481 ttttcttatg cagtatcttt tgttgtaatg ggattatatg taaattagtt ataagatatc
      541 atattattgt atctataaaa cttattgtat tgctgacaat gaatataaat aaagaaaaaa
      601 agcatcaaca acaacaatcc tttcttaatt ttatgtgtgc tcaattccaa cgactgttgt
      661 ttcttttgat ggaaagtaat aattattcaa attaaagata ttcgaatctt tcatattatt
      721 cctaagaaaa cagatagttt gccaagtcta atgatctttg ttcatcaggt tatggattat
      781 gaattgaagt tgaaaatagt actctctgat atgctgtacg tgatgttggt ccctagcatg
      841 tatcttttaa actattcaca agagtttgat taggttcttt gcttgcgtgt tggtttcatt
      901 ccactttatt gttaaatgat tttctgatac tctgtggatt atgtgagata aacttcgtat
      961 gccatgtaaa gtcataaaat agattctggt accatcatat agtatttttt ggtggcggaa
     1021 ctatagtatt catttatctt tataaagata ctttctgact attagataga tccataagca
     1081 catttcacgg ccggccaaaa gaaatgggaa ctgataatga tgttgttgat gataatattt
     1141 tgttggatta ctacatgaat gttcgtcatc ttggttaatc caagttggat tgccacatgt
     1201 caacttaagt tttgaaatat tgtattctct tattctctta tctgctgatc tttgcaagtc
     1261 tcacacaaga ctgtattcgt atattgagtt atacacaaat ttgaacaata tattctatta
     1321 ctatagatat ttaacttagt tctgctgcaa gttctggcct ttgttgatta atcatttttg
     1381 atattccctt catgtaattt tgtgcaaagg tagtaacagg ttgtgaagaa taccaaatac
     1441 aaccaagcac tttgcaatct ttacaagtca tggctatatc ccactgaggt gcactccaaa
     1501 tttcatctat gctcttctct aagagattgt aaatattttc agtcttatta aatttccagc
     1561 atggaaccat aactgttcca ttaccattaa caaacacact tttccatact ccgcactcat
     1621 caaatacgcc tcgtccatat ttgattattt gttcaaaata ttgtgggggt atcataatcc
     1681 gaggagagac atgtttttta ccgtaatcca gtatactttt gcataccttg atcattgttt
     1741 gccgatctgg aagaagagaa taattaacat cagatctgtc ttcgacaaat gtaaaagaga
     1801 ctgcatttga gcccagttct ttagccctat caaaataaga ctggtcaata aattcttctg
     1861 tattgtattt tgttataacg ctattaaaat agtgaggcac tttatgctct gttaagagat
     1921 ttagattatc cattaccctt tgatacattt gtgaggaaac acctcgtact ttacaatatg
     1981 gttcttcaaa tactgaatca atactacatg taataaactc gatgtatttc tttaattcat
     2041 taaggtcaat ggtatgaagt agagagcaat tagaaatcaa tgtaataggt agattcagat
     2101 tgtaaagata tcggacaagt tccataaaat caggacggct agtaggctca ccaccctcaa
     2161 taatagacca tatgcaatat tttgaaacct tgtcgaaaat taatttccat ttctctgttg
     2221 acaaatcatt tttcttggca aattgaatct gaccagtttt atcagagtca ccgaaggggc
     2281 acattggaca ataaaagtta caataatgcg ttaaactgaa gacggcgatc aacggtcgct
     2341 tgcgtcctat tgctctattt cctgaccatt ttccaagaag tttgattgta cgtatagtat
     2401 ctacaaccaa gattataatc agatgataat acgagtatat attaaacatt tttttattgt
     2461 aagtgaattt taattgattt aataaatgag caattaacca aaaataatga cttgaataat
     2521 gtaactaaaa agttgtatga taggtataca taataacagt ttttcatag
//
LOCUS       DATAAS010000316         3013 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_345389, whole genome shotgun sequence.
ACCESSION   DATAAS010000316 DATAAS010000000
VERSION     DATAAS010000316.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3013)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3013)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3013
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345389"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            158..1552
                     /locus_tag="VHF08_05150"
     CDS             158..1552
                     /locus_tag="VHF08_05150"
                     /EC_number="4.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016829 - lyase activity [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate ammonia-lyase"
                     /protein_id="HEX2068066.1"
                     /translation="MSSFRIDSDSLGEIKVPSDAYFGPFTARAMNKYKVTGQRAHINL
                     IKAYVMIKMSAAQANKDLHALDANKADAIIKACEEILSGKLVEQFVVESINSGAGTAF
                     NMNSNEVIANRALEILGNKKGEYEIINPNDHVNMSQSSNDTYPTAMHVAILYNMNDTV
                     SALDKLIQSLSNKAEEFRNVIKIGRTHLMDALPVTLGSEFQQYAYSLAQCKLKMIEAI
                     EDLQYVGLGGTAVGTGANSPKGYKEIAIDYLSKVSNLELKPSPNMYYSLQSKFPVANC
                     SSTLRNLALELLKMSNDLRLMASGPVAGFAEILIPAVHAGSSIMPGKVNPSLAECLNM
                     ICFNIIGNDVSVAMAVQAGQFELNVMLPGMLKCVLDSTDMLKNFIPIFAANMIDGLKA
                     NKEKLESYVKKSPILVTLLTPYIGYKKAAEIYKELLKTDKTIKELVLSMGLMTGEQID
                     NAISEDNILNLKNA"
     gene            1901..2290
                     /locus_tag="VHF08_05155"
     CDS             1901..2290
                     /locus_tag="VHF08_05155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068067.1"
                     /translation="MVNKKMVLSISFGIGVMLLTYLALQDSLTRPSLSRLPIPSQIAV
                     SIIIQQENLTQKNLNDFSTNYVYIKGDGSIYESDISSNAIGRYLGATEPTITTGNHFA
                     WEIKNKQNQKRYYVDHVTGDVIAKSKS"
     gene            2415..2882
                     /locus_tag="VHF08_05160"
     CDS             2415..2882
                     /locus_tag="VHF08_05160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068068.1"
                     /translation="MSSSKGTQSTNNNTTTLRKRYNKLVIINLQRRSMLRNMVKQNTQ
                     CEHKQIYTQANAICRRISSSYEEDRISIDDAVKLMIEAHNQMSHRGLPKDVVAAEMNK
                     RLNKLEKGETGTFEVTMANVSSSNLIDKNDDKTINEDQEGLNKYSESYWSEII"
BASE COUNT         1115 a          449 c          538 g          911 t
ORIGIN      
        1 cttaattcag gcctggggag aatttagcgg gatttatcta ttatgttagt acctatatga
       61 caaaaaataa tcagctatgt ctaggagaag cataatctaa aggatcgata tagttgtcga
      121 ttggtttatt aacactttat ccatagtgcc tagcgagatg tcaagtttca gaattgacag
      181 cgattcattg ggagagataa aggttccatc agatgcttat tttggacctt tcacagcacg
      241 agctatgaat aaatataaag ttacgggcca gagagcacac ataaatctta tcaaggcata
      301 tgtcatgatt aagatgtctg ctgcacaagc taacaaagac cttcatgctc ttgatgcaaa
      361 taaagcagat gctatcataa aagcctgtga agaaattctt tcaggcaaat tagttgagca
      421 attcgttgtt gaatcgataa attcaggagc agggactgca tttaacatga attctaatga
      481 agtaattgca aacagagcac tagaaatttt aggaaacaaa aaaggagaat atgaaatcat
      541 caatccaaac gaccatgtca atatgtcaca gtccagtaat gatacttatc caacagcgat
      601 gcatgtggcc atcctgtata atatgaatga cactgtatct gctctagata aactcattca
      661 atcattatct aataaagcag aagaattccg caatgtaata aagattggta gaactcattt
      721 gatggatgca ctacccgtaa ctcttggaag tgaatttcaa caatatgctt attcattggc
      781 acaatgtaaa ttaaagatga ttgaagcgat agaagacctc caatacgttg gacttggagg
      841 tacggcagtg ggtactggcg ctaattctcc taaaggatat aaggaaattg ctatagacta
      901 tctttcaaaa gtttctaatt tagagttgaa accatctcca aatatgtatt actctttgca
      961 aagtaaattt ccagtagcga actgctcctc tactcttcgc aatttggcat tggaactgtt
     1021 aaaaatgtca aatgatttaa gattgatggc atcagggcca gttgcaggct ttgcagaaat
     1081 tctgattcct gcagttcatg cgggttcttc cattatgcca ggaaaagtca atccttctct
     1141 tgctgaatgt cttaacatga tttgttttaa cataatagga aacgatgttt cagtggcaat
     1201 ggcagtgcag gcaggacaat ttgagctcaa tgtaatgcta cctggaatgt taaaatgtgt
     1261 tttagattcg acagatatgc tgaagaactt cattcctatt tttgcagcaa atatgattga
     1321 tggtttaaag gctaataaag aaaagttaga atcgtatgtg aaaaaaagcc caattcttgt
     1381 tacattgcta actccatata ttggttataa aaaggcagca gaaatttaca aagaattact
     1441 aaaaacagat aagactataa aagaattagt tttaagcatg ggtttgatga caggagaaca
     1501 aattgataac gcaatctcag aggataatat tcttaaccta aaaaatgcat aatgttggat
     1561 ggtattccat atcccattta tatattattt taattaagct tagacgatat atattgcgtc
     1621 acttttgaaa gatctccata acatttttct cttgtatttt atgatgaaaa tatttcgaca
     1681 agactgcgat aagtctaaga agaatatttt aagaagtcct cataatgtga gaagaataaa
     1741 tggaaacatg agaatttttc ttttaaaaag atactgtaac agatttggac attagtaatg
     1801 gctttctgat gaggattata gcttaattgt cattatgatt ataaagtaat ataacttata
     1861 caacatttga taaaggatat ttagcacaaa tgatggaaga atggtgaata agaaaatggt
     1921 cttatcaata tcatttggta taggggtgat gttgttaact tatttagcac tacaggattc
     1981 tttaactcga ccatcgctga gtcgattacc gatcccttca cagatcgcag tctcaattat
     2041 aatccaacaa gaaaatttaa cgcagaaaaa cttgaatgat ttttcaacga attatgtata
     2101 cattaaagga gatggaagta tctatgaatc tgatatttct tctaatgcaa taggaaggta
     2161 tcttggtgca acggagccta caataacaac tggaaatcat tttgcatggg aaattaaaaa
     2221 taaacaaaac cagaagagat actatgtaga tcatgtaaca ggtgacgtta tagcaaaatc
     2281 taaatcgtaa gtgaaaaagg tcattattca tataataata atattttaga tatttcagta
     2341 attagaatac taaaaccaat atatcaaaag cattctatca aaagttgatc tcaatggatg
     2401 gaaaatcgca cactatgtct tcctctaaag gtactcagtc cacaaataat aatactacca
     2461 ctcttcgaaa gcgatacaac aaattggtaa taataaattt gcagagacgt agtatgcttc
     2521 gaaatatggt aaaacaaaat acacagtgcg agcataagca aatatataca caagctaacg
     2581 caatttgtag acgaatatct tcatcatatg aggaagatag aatttctatt gatgatgctg
     2641 tgaaattaat gattgaagca cataatcaga tgagtcatcg tggtttacca aaggacgtag
     2701 tagcagcaga gatgaataag agattgaata aattagaaaa aggagagact ggtactttcg
     2761 aagtaacaat ggcaaatgtt agctcatcta atttaattga taaaaatgat gataaaacaa
     2821 taaatgaaga tcaagaggga ttaaataaat attccgaaag ttactggtct gaaataatat
     2881 aatttatctc aattctagtt gatcaaaata gtatacaata taattttagc accaaataat
     2941 ttttatcatt acaaatatca taaatccaga tcctttttgc attatatgta ttatttagaa
     3001 gcaaacagat aca
//
LOCUS       DATAAS010000317         2084 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3582629, whole genome shotgun sequence.
ACCESSION   DATAAS010000317 DATAAS010000000
VERSION     DATAAS010000317.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2084)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2084)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2084
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3582629"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            767..1933
                     /locus_tag="VHF08_05165"
     CDS             767..1933
                     /locus_tag="VHF08_05165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046912 - acyltransferase activity, acyl
                     groups converted into alkyl on transfer [Evidence IEA];
                     GO_process: GO:0006099 - tricarboxylic acid cycle
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="citrate/2-methylcitrate synthase"
                     /protein_id="HEX2068069.1"
                     /translation="MDARNIGLRNIEVADTRICSIDGENGKLIYRGYDILDLVSHSTF
                     EETAYLLLFGELPSPDDLIDFSRRLREARSISEPILRNLENRPKRAHPMDVLQSCVSE
                     LPDYDLNMEDDSKEANIRRAIILIAKIPAIVAAWNRIRTGHNVLDSLEEGSHASNFLY
                     MLRGTTPTPEEAKVFDICLILHAEHSFNASTFAAREIASTRAHMYACIGGAVGALSGE
                     LHGGANIQVMKMLLEIGDIANVEKWVEARLRQGGRIMGMGHAVYRTTDPRAEILSRLS
                     RAMSKETGTKWFEITERVENFTKRYMLENKKQAIYPNVDLYSASLYYSMGIPMDLNTP
                     IFAISRISGWCAHIIEEKFAEAAPKPALYRPKAVYVGKYCGPMGCEYTPLQNRD"
BASE COUNT          680 a          362 c          390 g          652 t
ORIGIN      
        1 ttactattgt atggcttgtg gaacaaaaca taatgaaatt gcctgcccta aatgtggttc
       61 aaagatgaaa agagtgggat gataattaac gcttcaaatc ggttcctaaa tatgattttt
      121 ctgtatactt tttctttata aatctcaaaa agaagccagc taactatgag atgatggtca
      181 tatgtatatt attatcattt tccattgcac aagtgaattc aaataataat attttaaaat
      241 tcatttactt agttgtacag gaatcaattt tttatactca tctaatacaa atagtcatct
      301 cactttagat ctacatattt tatatatcat ttttatatat gtcttataat tgcaggttcc
      361 aatttgatac tctattattg tatgagataa ccttagacag gtaatatttt gcctaatctc
      421 agtctatcta ttttctctta gaatacctaa atagattaca ttttgatttg ataccatatc
      481 gtgtaagtta gattccatag taatgtattt gatagaagaa ttgctaagac gattaaacaa
      541 ttctttctgg ccgatcaatt tatgtccttc agattgtata cgcagtcagg aaatatccaa
      601 gagtcataaa atgaatgatc gattaaaatt gtccatgctg catcatcaat gaagtgatat
      661 gttatcttaa tggtggtaaa tagtaataaa tataataata agttattcta tcataataaa
      721 aacaaaacat tactttaata tacaaatttg gaactaggat cgttcgatgg acgctaggaa
      781 cattggctta agaaatatcg aagttgctga tacacgtatt tgttctattg atggagaaaa
      841 cggtaaacta atttaccgtg gctatgacat cttagattta gttagtcatt ctacctttga
      901 agaaactgct tatcttttat tattcggcga attgccaagt ccagatgact tgatagattt
      961 ttcaagaaga ttaagagaag cccgtagcat ttcagagcca attcttagaa atttagaaaa
     1021 ccgcccaaag agagcgcatc ctatggatgt gcttcagtca tgtgtctcag aattgcccga
     1081 ctatgatttg aacatggaag acgattcaaa agaagccaat attagacgag ctatcatcct
     1141 aatcgcgaaa attcctgcaa ttgtagcggc atggaataga attcgcacag gtcataatgt
     1201 tctcgattca ctggaggaag gttcgcatgc ttcaaacttt ctttacatgc ttcgcggaac
     1261 aacaccgact ccagaagaag caaaagtatt tgacatctgt ctcatcttac atgcagagca
     1321 cagcttcaat gcctcaactt ttgcggctag agaaatagcg tcgaccagag cgcatatgta
     1381 cgcttgcata ggtggtgctg tcggcgcttt atccggtgaa ttacatgggg gagcgaacat
     1441 acaagtaatg aaaatgttgc tcgaaattgg tgatattgca aacgtagaga aatgggtgga
     1501 ggccaggttg cggcaaggag gaagaattat ggggatgggt catgctgtat acaggacaac
     1561 agatccacgg gccgaaatac tatcaagact ctcaagagca atgtcaaagg agacaggcac
     1621 aaaatggttt gagattacag aacgggttga aaacttcaca aaaagataca tgctagaaaa
     1681 caagaaacaa gctatttatc ccaacgttga tctatatagc gcatcgcttt attatagtat
     1741 gggcattccc atggatctta ataccccgat ctttgcaatt tcaagaattt ctggttggtg
     1801 tgcacacata atcgaagaga agtttgcaga agccgctcct aagcctgcgc tctatagacc
     1861 caaagctgtg tatgtaggga aatactgtgg ccctatggga tgtgaataca cacccctaca
     1921 aaacagagac tgatttatat attattcaaa cagccaccta aatataacat atattcttaa
     1981 ttgtctcgtc tacatcctat tctttctttt gctcttgagc ttttgatgat ttctgcgtag
     2041 aaaaactgtt tataggacaa tggttattct aatccttgcc ttgt
//
LOCUS       DATAAS010000318         2109 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4674005, whole genome shotgun sequence.
ACCESSION   DATAAS010000318 DATAAS010000000
VERSION     DATAAS010000318.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4674005"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(286..690)
                     /locus_tag="VHF08_05170"
     CDS             complement(286..690)
                     /locus_tag="VHF08_05170"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HEX2068070.1"
                     /translation="MKDFKVTQKYLQTKVTVNNFDLTVYLAMNNKQIIKGLVIKNQLK
                     ENEGMLFVYQQPAKYRFSMRGMKFPIDIIWLNNARKVIHIEHSLEPCPSDIDCPKFMP
                     TAAALYVLETIAGFSNKHDVKIGTQIDFHLQQ"
     gene            complement(753..1475)
                     /locus_tag="VHF08_05175"
     CDS             complement(753..1475)
                     /locus_tag="VHF08_05175"
                     /inference="COORDINATES: protein motif:HMM:NF024783.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease signature motif containing
                     protein"
                     /protein_id="HEX2068071.1"
                     /translation="MSLNGRNIPQPIQKQLRREANFGCALCGCPIIEYAHIIPYRNIQ
                     AYLPENIVVLCPNHYTNFDRGEFSDSYLRDAKNNPHNKTYIKDAFFIDSQDIAVNVGK
                     SKFINTSRILAVNDFDIISIKRENEKYILFDINFFDKLNNLIAVVYENSWTAEKTANA
                     VWDIVYKPHHLAIRNTSRNLFFESKIENEELFITANMYYNTIPLSITNDGIWISENEM
                     GIELKGHVLKNYDIGINAQANY"
BASE COUNT          665 a          343 c          314 g          787 t
ORIGIN      
        1 aggaggatat agagtgcatt cttgtaggcg taagaatgat tatcccttat gcttgttagc
       61 aaagattcac aaaaatatat aacgctctcc ttcaagtatt gccatacatc actatgttaa
      121 tatcttttga cattctgaga ctaagttttc tatatcatga gaagattacc tattcaaatt
      181 tttcttatag gtagtaatct tttacttctc catgttttta gttatcactt ttactatttt
      241 tcttcataat atttcacatt tcatcacttt tctcaaacta attatttatt gttgcaagtg
      301 aaaatctatt tgtgtgccta tcttgacgtc gtgtttgttt gaaaaccctg ctatggtctc
      361 caatacataa agtgcggctg cagtaggcat aaatttagga caatcgatat ctgatggaca
      421 aggttctagg ctatgttcta tatgaatcac cttacgagca ttatttaacc aaataatatc
      481 aattggaaat ttcatgcctc tcatagaaaa tctatatttt gccggttgtt gataaacaaa
      541 caacatcccc tcattttctt ttaattgatt tttgataacc aaacctttaa tgatctgttt
      601 attattcata gctaaatata ccgttaaatc aaagttattt actgtaactt tagtctgtag
      661 atatttctgt gttactttaa aatccttcat ctcgtttaat actaaataaa gcagtgaaca
      721 ttaactggta tttgaccatt tattgcgttt atttaataat ttgcctgagc atttattcct
      781 atatcataat ttttcaagac atgtccttta agctcgatgc ccatctcatt ttcgcttatc
      841 catatgccat cattagtgat gcttaaggga attgtattgt aatacatatt agcagtaatg
      901 aagagttctt cattttctat tttagattcg aagaatagat ttcttgaagt atttcggatc
      961 gccaaatgat gtggtttgta gactatatcc caaactgcat ttgctgtttt ttcagcagtc
     1021 caactatttt catagactac tgcgattaaa ttgtttaatt tatcaaaaaa gttaatgtcg
     1081 aacagtatat acttttcatt ttctctcttg atagagataa tgtcaaaatc atttactgcc
     1141 aaaattctgg aagtattgat aaatttagac ttacctacat ttacagctat atcctgtgaa
     1201 tctataaaaa aggcatcttt tatgtatgtc ttgttatggg gattattctt tgcatctcgc
     1261 aaatatgagt ctgaaaattc tcctctatca aaatttgtat aatgattagg acatagaact
     1321 acaatatttt caggaagata tgcctgaata ttacgatatg gaataatatg agcatattct
     1381 attattggac agccacataa agcacatcca aaattagctt ctcgtctgag ctgtttttga
     1441 ataggttgtg gaatatttct gccatttaaa gacattaaga ctcatatcta cgcgacaaaa
     1501 atataaaaat aatttgattt tgccatttag ccatcagtca cggtgaggta tactatacta
     1561 actaaccgta ttcatggttt aataatatca ttcaattatt gcatgattct agtaagtata
     1621 gatgtatcca gaatgataat aatcactgat aatcatgcag acgcttatct cgttgtgact
     1681 ctattttttt ctcaatttcc tttttatgat tctccaaaat atgattatct gcacagttgg
     1741 tgtgcattat ccctatctgg caaaattcgc aggatgtaac aaaatcaata tttttaaacg
     1801 tctgcttaca agattgacat atctcagatc ctatctcaaa gtcagaaagt ggtttcagcc
     1861 atgtttcacg ccagagaact atcatatcaa tcacaatcta tgttggtact acctcatcaa
     1921 cgtgttgata taaggttgtt gttggtagat gtcagaaaaa aattagagaa ttgcgatgat
     1981 aattgtgata ggcttgaaaa tgcataaagt tagcctttct aataaataag ttaggataaa
     2041 atatacaatt gcaaggcata ggtatcatta aatgtctgat atgactactt tgtattctta
     2101 tggttgtat
//
LOCUS       DATAAS010000319         1542 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3583671, whole genome shotgun sequence.
ACCESSION   DATAAS010000319 DATAAS010000000
VERSION     DATAAS010000319.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1542)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1542)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1542
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3583671"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            265..>1542
                     /locus_tag="VHF08_05180"
     CDS             265..>1542
                     /locus_tag="VHF08_05180"
                     /inference="COORDINATES: protein motif:HMM:NF017262.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CopD family protein"
                     /protein_id="HEX2068072.1"
                     /translation="MKTQRAKKRLVPSNKNIILLLLVITIVSFSSFFYFYHTSYFLAY
                     SQEGSDVSSSSGSEYHPQTEAVTSTYDGLLKVPLIISQAAIVGGVFNHIFFQRVLNRI
                     DTKYRINIENNNLQSQKKFFIILVSCGITILVTGTSLIYLQAFSLSIDLNTDATTTFT
                     ILTSTDVGTVWILRIITASIIIASSFLYYILEKMKIKKKRRIVPSAEEDHHDIQIEKK
                     RSSGISKISLYAIIIAGAICIFSNSLVSHNAALTFLPSLAISMDWLHFMAVAIWVGGL
                     FYISAVLLDIIKTAAEAKVKFENYSSTSIRSDKIESAYFLALLLPHFSVIATISLGII
                     GITGLYMAWIHLHTAEALFDSPYGNILIIKLSAALPMVILGAYHLLKLHHSLVEVASM
                     SINTEGRNKKSPLLNSVNNNSLDIYAKFRKTIRI"
BASE COUNT          552 a          238 c          232 g          520 t
ORIGIN      
        1 cctcaatcaa aaactgatgc tggattccca gaaccattta tgtcaaataa cgaaatagta
       61 aacaaactag aacagcttga aaatgccact aaaactcaat gaaaatagaa ataccaaatg
      121 aatatactaa cagtacatac acatatatca tcttcctttt tcttatcttc ttgatattaa
      181 atcaaagtct ttgttatgct attttatagt caacatcaac attttaagag gagtatttca
      241 attaatgatc aaggcgcata aagaatgaaa actcaaagag ctaaaaaaag attggtgcct
      301 tcaaataaaa atattatctt attactatta gttattacta tagtttcgtt ttcatcattt
      361 ttctacttct accatacatc atattttcta gcttactcac aagaaggaag tgatgttagt
      421 agtagcagtg gttcagaata tcatccccag acagaagcag ttacttctac ttatgatggt
      481 ttgttgaaag tacctttaat aatatcccaa gcagcaatag ttggtggggt atttaaccat
      541 atattttttc agagagtgct taatagaata gatacaaagt atagaattaa catagaaaat
      601 aataatttgc aatctcagaa aaaatttttt atcatattgg tatcatgtgg tatcactata
      661 ttagttactg gaacttcttt aatatattta caggcattta gtttatctat agatcttaat
      721 actgacgcta caactacttt tacaattttg acatctacag atgttggaac agtttggata
      781 ttacggatta ttactgcttc gataataatc gcatcttctt ttctatatta tatattggaa
      841 aagatgaaaa taaaaaagaa aagaagaatc gtaccctcag cagaagaaga tcatcatgat
      901 attcaaatag aaaaaaagag aagtagtggt atttcaaaaa tatctttgta tgctataata
      961 atagcaggtg cgatatgcat cttctcaaat agcctagtta gccacaatgc tgcattaaca
     1021 tttcttccat cattagctat atccatggat tggttgcact ttatggcagt agccatatgg
     1081 gttggaggat tattttatat ttcagctgtc cttcttgata taataaaaac agctgctgaa
     1141 gctaaggtta aatttgaaaa ctattcatca acttcaatta gatctgataa aattgagagt
     1201 gcttattttc ttgctttatt gctaccgcat ttctcagtaa tagcaacaat atcacttgga
     1261 ataattggga taacaggtct gtacatggct tggatccatc ttcatactgc agaagcacta
     1321 tttgatagtc catatggtaa tattttgata attaaattgt ctgctgcttt acccatggta
     1381 attcttggtg cttatcatct actaaaacta catcatagcc ttgtggaggt agcaagtatg
     1441 agtataaaca cagaaggaag aaataaaaaa tctcctttac ttaattctgt taataataat
     1501 tcactagata tatatgcaaa gtttaggaaa acgataagaa ta
//
LOCUS       DATAAS010000320         3986 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3585632, whole genome shotgun sequence.
ACCESSION   DATAAS010000320 DATAAS010000000
VERSION     DATAAS010000320.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3986)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3986)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3986
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3585632"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..639
                     /locus_tag="VHF08_05185"
     CDS             <1..639
                     /locus_tag="VHF08_05185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068073.1"
                     /translation="DSAIKYHSNETFDSYYNILMRENLLKQFSLKEKCRIDWIRFYPI
                     EIKSDNDVLDERLRNQILNAILTFGRSVLILDEGHSRKTKINRTLRLLPTTIIGYTGK
                     DDSFEVLSVFNRLVTNGPFNISKRGLARLLIDNGMGDIKPEKIYRCLLQIQRINQKLA
                     FNEFYDEKMKFAKDEIEFIKKLIGTDTISDRRQLEMLIEQTTNSKITDYMPS"
     gene            831..983
                     /locus_tag="VHF08_05190"
     CDS             831..983
                     /locus_tag="VHF08_05190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068074.1"
                     /translation="MSILVEEQKEEEEGVPVCGANLWSPVVDKAYYIEQIHYRIGNRM
                     YIENAD"
     gene            973..1263
                     /locus_tag="VHF08_05195"
     CDS             973..1263
                     /locus_tag="VHF08_05195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068075.1"
                     /translation="MQINNNRKNNNNNHIPNLEEQRDIELENIIGNLMIAQYQVDKLR
                     SRLSERIGGYGSTSNKKASTNIFKHNDKWYKISMRVDEMSVDHPDIASQLKE"
     gene            1715..3343
                     /locus_tag="VHF08_05200"
     CDS             1715..3343
                     /locus_tag="VHF08_05200"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003883 - CTP synthase activity [Evidence
                     IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0006241 - CTP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEX2068076.1"
                     /translation="MLSKARPRSLNPKFIFITGGVMSGLGKGVITSSIAKLLQLAGLK
                     VSCVKIDPYLNYDAGTMNPIAHGEVFVTDDGGECDMDIGNYERFLNIAVTKDHNITTG
                     RVYLDVIHCEREGKYLGQCVQIIPHITDAIKNQLRKIAFDEYLDVMVVECGGTVGDIE
                     SLPFLEALRQMELDGVSNTLFIHVTLAPELEVVGEQKTKPTQHSVQELRRIGIQPDIL
                     AVRCKNPLTLEARRKISLFASIKEESVISSHDAPSIYKIPEVLESQGIVKVIAHKLFF
                     RNCTPKWGNWKTIARSFHQYNSSVNIAIVGKYVSLPDSYVSIYHALSHAGANIGRKVE
                     VKWIESERLEGEGGERKLDCLKQFDGILIPGGFGKRGSEGIINAANFARLENIPYLGI
                     CFGFQLAVVAFARNVCSLENAGSTELCPHTKDPVVQFMPEQKTLQDMGGTMRLGRHNI
                     EIISHTKAAKIYGKSLIQRRHRHRFEFNQAYRRIVEKHGMVLSGFSDNGRRTEILELP
                     NCKFYLAVQYHGEFNSRPGKPEQAFKAFVEACRS"
     gene            complement(3340..>3986)
                     /locus_tag="VHF08_05205"
     CDS             complement(3340..>3986)
                     /locus_tag="VHF08_05205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sugar kinase"
                     /protein_id="HEX2068077.1"
                     /translation="PVLNDVAVFPSKSAILMEHVLKIDGKDIWHDNSDGVIVSTPTGS
                     TAYSMSAGGPMVLHRSQVFIVVSVNSVDNTRRPMVIPNDTTLEIADIMSRYHCEVVLD
                     GGSRLRIRKILECSKHQFPARLVRLMGHSSATSLMAKKVKLAEDLLSMPPSAKLILKT
                     LEYEGALSQKDLSVRTMLPERTIRLSLSHLLNLGYVKKKTSLRDARQRIYELRI"
BASE COUNT         1369 a          648 c          776 g         1193 t
ORIGIN      
        1 gattctgcta taaaatatca ttcaaatgaa acatttgata gttattacaa tattttgatg
       61 agagagaacc tattaaaaca gttttcgcta aaagaaaaat gcagaattga ttggattcgg
      121 ttttatccaa ttgaaatcaa atctgacaat gatgttctag acgaacgcct acgcaatcag
      181 atcctcaatg caattctaac ttttggaaga tctgtactca ttttggacga aggtcattct
      241 aggaaaacaa aaattaacag aacattgcga ttgcttccaa ctacaataat tggttatact
      301 ggcaaagatg acagttttga agtactttct gtatttaata ggttagttac aaatggaccg
      361 tttaacatct ctaaaagagg acttgcaagg cttttaattg ataatggaat gggagatatt
      421 aaaccagaga agatataccg gtgtctttta cagatccaaa gaataaacca aaaacttgct
      481 tttaatgagt tttacgatga aaagatgaaa tttgcgaagg acgaaataga atttataaaa
      541 aagctgatag gtactgacac tatttcagat agaaggcaat tagagatgct gatcgaacaa
      601 acaacaaata gcaaaataac agattatatg ccttcataaa tagacctatt agaatattct
      661 gaaatcccat gttgctctgc tggtcataat tcaactactg ataactgcaa cctatatcaa
      721 atctgtaatg tgtatagaac cattagggtt ttattgtgtc atattgtatt atcttctcta
      781 actttttttc tacttcctta ttatctgatg ttaacagtgt taatgttatt atgagcatac
      841 tggttgaaga gcaaaaagaa gaagaagaag gagtacccgt atgtggcgca aacctatggt
      901 cccctgttgt cgataaggcg tactatattg agcaaattca ttatagaata ggaaatagga
      961 tgtatattga aaatgcagat taataataat agaaaaaata ataataacaa tcatattcca
     1021 aatttggaag aacaaagaga tattgagctg gaaaatatta taggcaatct tatgattgca
     1081 caatatcaag tagataagtt gagatcaaga ttaagtgaga gaataggagg ttatggctct
     1141 acaagtaata aaaaggcctc tacaaacatt ttcaaacaca atgacaaatg gtataaaatt
     1201 agtatgagag tggatgagat gagcgtcgac catcctgata tcgcaagcca gctaaaagaa
     1261 tgaagaatgc ataatgtgca tgatatctga gtgcatgtcg attctttcac aataaatata
     1321 ctcggtttta agtgacaata tgtgcgtaat cataagcttt tgttgtaccg tcaaggacat
     1381 catttttata tttcatgctt tatttgaaat agagtattgt attattgaaa aatgtagctt
     1441 ttaaaagcct ataattcttt agcaatatat aatacgatat atgtttcgtc gagattgact
     1501 atcgtgattt cctcttgttg atctgattgt ttcctatttg tgagtttttg agtgtagtgt
     1561 aattataaca aataaaataa tatgtaaaaa tacataatga tacaaaggaa aaaccaataa
     1621 gtcaaggtgc tggttctttc aataacagat atccatttgc tatggcaaga ctagtttaaa
     1681 aaaagaataa aaaggtgatc cgttaaaatg caatgtgctg tctaaagcgc gaccaagaag
     1741 cttaaatcca aaatttattt ttatcacagg aggtgttatg tctggactag gaaagggtgt
     1801 aatcacatca tcgatagcca aattgctgca attagctggt ttgaaagtat cctgtgtaaa
     1861 gattgatcct tacctaaact acgacgcagg aacaatgaat cctatcgctc atggagaagt
     1921 tttcgtaacc gacgatggcg gggaatgcga tatggatatc ggaaattatg aacgttttct
     1981 caatattgct gttactaaag atcataatat taccacagga agagtatatc ttgacgtcat
     2041 tcattgtgag agagaaggaa aatatcttgg ccaatgcgtt cagatcatac cacatattac
     2101 agatgctatc aaaaatcaat tacgaaaaat tgcctttgat gaatatctag atgtaatggt
     2161 tgtagaatgt ggcggtactg taggagatat cgaaagtctt ccgtttctag aagccttaag
     2221 gcaaatggaa cttgatggtg tttctaatac attatttatt catgttacac tcgctcctga
     2281 attggaggta gtaggggagc aaaaaacgaa acctactcaa catagtgttc aggaattacg
     2341 aagaattggc atccagcctg atattttggc tgttagatgc aaaaatcctc ttactttaga
     2401 ggctaggcgt aaaatttcac tttttgccag tattaaagaa gagtctgtta tttcaagtca
     2461 tgatgcgccc tctatttata aaattccaga agttctagag agccaaggaa ttgtcaaggt
     2521 tattgctcat aaattatttt ttagaaattg tactccaaaa tggggcaact ggaaaacaat
     2581 tgcaagatcc tttcatcaat ataatagttc agtcaatatt gcaatagtag gaaagtatgt
     2641 cagtctacca gacagttatg taagtatata tcatgcactg tcgcatgctg gagcaaatat
     2701 cgggagaaag gtcgaagtta agtggatcga atcagaaaga ttagaaggag aaggtggaga
     2761 gagaaaactt gactgcctaa aacagttcga cggtatattg attccgggtg gctttggaaa
     2821 gcgaggaagt gagggaataa taaatgcagc aaactttgct cgtctcgaga atataccata
     2881 tttaggaata tgttttggct ttcagttagc agtagttgca tttgcaagaa atgtatgtag
     2941 cttggaaaac gctggttcta cagaactttg tccccataca aaagatccag tagtacaatt
     3001 tatgcctgag caaaaaactc ttcaagatat gggtgggacg atgagacttg gtagacataa
     3061 tattgagatc atatctcata cgaaggccgc aaaaatatat gggaaaagcc taatacaaag
     3121 aagacataga cacagatttg aattcaacca agcataccgc cgcattgttg aaaaacacgg
     3181 tatggtttta tcaggtttct cagataacgg cagacgaaca gaaatcttgg agctacctaa
     3241 ttgcaagttc tatcttgcag tccaatatca tggcgaattc aatagcagac ctggaaagcc
     3301 cgagcaagct tttaaagcat tcgttgaagc ctgtaggtcc taaattctaa gttcataaat
     3361 tctctgtctt gcatcacgta aagatgtctt cttcttaaca tagccgaggt taagcaaatg
     3421 gctaagggag agccgtatag tccgttcagg aagcatggtc cttacggaaa gatctttttg
     3481 actcaatgca ccttcgtatt ctaacgtctt taaaatcagt tttgcacttg gaggcatgct
     3541 taacaggtct tctgccaatt tgaccttctt ggccataagt gacgtggcgg aagaatggcc
     3601 cattaaccta acaagtctgg ctggaaattg gtgtttagag cattctaata tctttcttat
     3661 tcttaaccta gagccaccat ccagcacaac ttcacaatga tatctactca tgatatcagc
     3721 aatctctaat gttgtatcat taggaatcac cataggacga cgagtattat ctacagagtt
     3781 taccgatact actataaaga cctgagatct atgtagaacc attggacccc ccgccgacat
     3841 tgaatatgca gtagatcctg ttggagtaga cacaataaca ccgtcgctgt tatcatgcca
     3901 tatgtctttc ccgtctattt taagtacatg ttccattaaa attgcacttt tactaggaaa
     3961 aactgcaaca tcattcagaa caggtt
//
LOCUS       DATAAS010000321         2528 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4676763, whole genome shotgun sequence.
ACCESSION   DATAAS010000321 DATAAS010000000
VERSION     DATAAS010000321.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2528)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2528)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2528
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4676763"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(1..118)
                     /locus_tag="VHF08_05210"
     tRNA            complement(join(1..46,65..80,97..118))
                     /locus_tag="VHF08_05210"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(66..68),aa:Ser,seq:cga)
     gene            354..785
                     /locus_tag="VHF08_05215"
     CDS             354..785
                     /locus_tag="VHF08_05215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068078.1"
                     /translation="MLAASAKPPTTEEIKKLTITDIAIMSGLADSLRDNLKKHIGIDP
                     YTTRDPFGEKDDYNYFVVLDREQPNRIVSMIVAKKDPSPQPLWDKILNERLIKLSIPK
                     EDAVALKNELMPKETNNFYPYRDSGKVVGYIMFAFQICGQH"
     gene            complement(849..1529)
                     /locus_tag="VHF08_05220"
     CDS             complement(849..1529)
                     /locus_tag="VHF08_05220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEX2068079.1"
                     /translation="MQLTKKLEIQSKKKIIEFLHNQPVGRIASIDINGYPQIIPMNFV
                     FVQADDPHINSQSIIKSDAVYMHSHPFGEKLDNIKRNEKVGFEVDQHICFLPSYYFHP
                     TDASQADTLYISVVIKGNASIVEDNKEKASALNALMRKYQKEGRYQTLHPYMSSVNEV
                     TVIKIVPKEMHGKYKIGQHWASAYRLKIARNIIEREGKGQAKAILDIMGVEIMPNGSL
                     NVKEEPLM"
     gene            complement(2154..2513)
                     /locus_tag="VHF08_05225"
     CDS             complement(2154..2513)
                     /locus_tag="VHF08_05225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068080.1"
                     /translation="MAKVQPQYSQAFSNLQLDFIQTTKNIIQNTISSQKQFIGSWNIM
                     PVSTPYTENFTRQTNEITNNALRAVGINNQLAINALDLARENLRIYNRTVNAVTEFGT
                     NIAKTCTAFSAVAQQQQ"
BASE COUNT          838 a          393 c          440 g          857 t
ORIGIN      
        1 cgccgggggt gggactcgaa cccacgagtc ccgaaggaca tcagctagca tgtcgttatt
       61 tgatctcgag gctgacccct tttagggtct ataacttacc tagcttgggt accccggcac
      121 ctttcttaac aaagtttgca atttaatgtt ttttcatata taaatagtaa cataataata
      181 atatatccaa tgctcgatca aaaggcagag ctattatcgg taaaataatt tgagcctcag
      241 caatattata gatcccatca actttataac attatatcta ctggaaaaca aatataatta
      301 tatattcaca ataaggagta caagttatat tgtgatgatt gttatagaaa tacatgttag
      361 cagcatctgc aaaaccgcca acaactgaag aaattaagaa actaactata actgatattg
      421 ctataatgag cggactagcc gattcgctta gagataatct caaaaagcat attggaattg
      481 acccctatac tacacgtgac ccatttggtg aaaaagacga ttataactat tttgtagtac
      541 ttgatagaga gcaaccaaac agaattgttt caatgattgt tgccaagaaa gatccatctc
      601 cccagccact atgggataaa atattgaatg aacgtctgat taaattatca atacctaaag
      661 aagatgctgt agcattgaag aatgagttaa tgccaaaaga gacaaataat ttttatccat
      721 atagagattc tggtaaggtt gttggttata ttatgtttgc attccagatc tgtggacaac
      781 actaataatt tgttagaaaa agcacagtat tcagaaagaa attaaaattg aattaaaaaa
      841 taagaaagtc acatcaatgg ttcttctttt acatttaagc taccatttgg cataatctct
      901 actcccataa tatcaagaat cgcttttgct tggccttttc cttctctttc aataatgttt
      961 ctggctattt tcaatctgta agcagatgcc caatgctgac ctatcttata tttgccatgc
     1021 atttcttttg gaactatttt aattacggtg acttcattga ctgatgacat gtatggatga
     1081 agtgtttgat atcttccttc cttctgatac tttctcatta aggcatttag tgcgctggct
     1141 ttctctttgt tatcttcaac aatcgaagcg tttcccttaa tgactacgct tatataaaga
     1201 gtatctgctt gtgatgcatc agtaggatgg aaataatacg atggtaaaaa gcatatatgc
     1261 tgatcaactt cgaatcctac tttttcattt cgtttgatgt tgtcaagttt ttcaccaaaa
     1321 gggtgggaat gcatatagac ggcatctgat tttattatag attgtgaatt aatgtgtgga
     1381 tcatctgctt gcacaaaaac aaaattcata ggtatgatct gtggatatcc attgatatct
     1441 attgatgcta tcctaccaac aggttggtta tgaagaaatt caatgatttt cttcttagac
     1501 tgtatttcaa gcttcttggt aagctgcatt tactgacctt tttataaaaa caacataatt
     1561 taacttgtta gtatacaaga gtactacagg agaaacatca acaagtacaa gagcttactg
     1621 gtcaaaagga ttgaatacaa aagttgattg caatatttga atgatgataa taatgatgaa
     1681 ggatatttaa agcatagcag atcttaaaat gttaaagtca ttttattaga caacaaaata
     1741 ctcttatcag catctattac gctacgtaaa ggtatctatg gaattttcaa actggagaat
     1801 atttgaagaa aagttatgat atatatgata gttagatata gatatatata gatatagtat
     1861 tgatgttcaa agtgtataat aacataacca ataacatcta caaattttaa tattagttca
     1921 ttcaatatgt aatagattct gagtggcaaa atagagtcaa atttgtctta catcctacca
     1981 aatctaataa tgcctgctaa tgatgaagtt ttatttacat aagagaaaaa aggctgcaga
     2041 agtaagagta agagctagat taaactattg aaaatgcatt aaacactgaa aagatactgt
     2101 aaaagaaatc aaaaaaaatt gaagtcatta gttttttaat gcttggtgaa ctattactgt
     2161 tgttgttgag ctacagcaga gaaggctgta caggtctttg cgatattagt gccaaattct
     2221 gttactgcat tgactgttct attataaatt ctcaagttct ctcttgcaag atctagtgca
     2281 ttgattgcta gctgattgtt gatgccaact gctcttagtg cattgttggt aatttcgttt
     2341 gtttgtcttg taaaattctc tgtgtatggt gttgatactg gcatgatatt ccagcttcct
     2401 atgaattgct tttgagatga aattgtgttc tgaattatgt tctttgttgt ttggatgaaa
     2461 tctagctgaa gattagagaa tgcttgtgaa tattgtggtt gaacttttgc catctcatct
     2521 actgctca
//
LOCUS       DATAAS010000322         3664 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4132682, whole genome shotgun sequence.
ACCESSION   DATAAS010000322 DATAAS010000000
VERSION     DATAAS010000322.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3664
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4132682"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1281..1418
                     /locus_tag="VHF08_05230"
     CDS             1281..1418
                     /locus_tag="VHF08_05230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068081.1"
                     /translation="MPYQRLILGQEELNISMQASILLLSGEKDTQTPVEQAFLLQQKL
                     R"
     gene            complement(1752..3593)
                     /locus_tag="VHF08_05235"
     CDS             complement(1752..3593)
                     /locus_tag="VHF08_05235"
                     /inference="COORDINATES: protein motif:HMM:NF044870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-propeller fold lactonase family protein"
                     /protein_id="HEX2068082.1"
                     /translation="MLRITTSVLLLIMVLLLPILALYYYLTYTDNNAVIAQENSPLSN
                     NFTTNINSSSNIDSNRSDDIINASSSFSSSSESNSGIDVHTFPVGIAVNPNTKKVYVA
                     NEYSNTVSVIDTETDKVQATIHVGNFPYGIDINPLNNRVYVTNRGSNTVSVIDGSIDT
                     KLLDLSVGKSPVGIAVNPSANWIYVTNLDDGTLSVIDGITNEVIDTISVGKAPYGIAV
                     NPLSNKMYVADIMTNTVSVIDGGTNKVTAKISVGKKPTGLAIDIAKGNNRLYVTNYDS
                     DSVSVIDMLTNNVIDNITSVGDSPVGIAINPISSNLYVSNIASNTVSVIDTKALNIDD
                     INNKTKTKTDTTLLPTTAIKKNKNIILKEIRVNPTLKESYSGEDSLVNLPSNVGFPLV
                     ASHITINPYENRAYITNTGSNTISIINGDSNEVAVRLTFNVNPPHTGEIRCNGEKNIS
                     GNSTSYNKGQILQCTAIPERGYAFASWSDLANDLNSNPLTLEISRFGTLTANFKSAIT
                     PEVYIFAIGGIVGATSVFVGWYYKYGQRRYINRYLTRIQSTYDTLHQEDKQQCILELQ
                     RIRTELIYLFKKGSLSDSHYNILDKKASDYIEIVRNEKEEEEEEKQT"
BASE COUNT         1163 a          591 c          599 g         1311 t
ORIGIN      
        1 aatgacggta taataggcat taaaaacaaa gctaggcttc taatattctt ctagatttgc
       61 ttctgttatc ctttgaattc cacgttctaa tggaaattgc tcctgtgtta tttcgacaag
      121 tttagaattg ttctttatgg agaaaatccg tactatatct atcaagcata tagtagtcta
      181 aattctttat ttggctgatt actaagagaa atagttaaaa tcaagaggtt attctaacaa
      241 aaaggataag tggtttaatt tggctaagaa gaaagaacaa taggaataat ctctaaacca
      301 gttaactata ccttatttaa tcaaaaaata atatttgaat tcttaaaggc tcatttatgg
      361 agtgctgctg acattcttag gggctctaga tccagcggac tacaggcagc caattatgac
      421 attgttattc attaagttac ttaacgatac cttcgaggag aatgctgaga agctagttaa
      481 agaatgtaaa agtcatattg gtatgatgat tgatgaagat cctagttact aactaatagt
      541 aactatgtta taaattattt aaatcattca tgcaatgaaa tctattatca tcagttagtg
      601 gacagtcctt gctaacaact tcattatctc ttaatgaaat tgcatatggt atttgaaaga
      661 ataaacatta ctctatttca gctatagttg ctgctattca ttagtaattc aatgtaatga
      721 cagatatgaa gatgctttat atctttgact atttgaaaag ttttgtttgt agttaaattg
      781 tttcgttgaa ttatagtatc tttagataat gcttcgataa ataataactt tccatgcaga
      841 actcacaaat gtgatagacg gcatgttgac aactggctat gatatatctc ttatatctgc
      901 atatgagtca aattcatcga tttcgtaata agaaattgct taggttaaca gagccatcaa
      961 attatacttt acatacttat aggtccttct acttgacatt gagtaataaa gatattggac
     1021 tacatatatt gataagtaaa gtaagccatc tatttactat agagaagata actggatgga
     1081 taagattcta aaggcagttc tcaaaagaca aattcccttc attataggtg gtactataac
     1141 tggtataatt gtgacatatt actatggctt tttatttagt attattgtaa acagagctat
     1201 ttggacattt atctctttta ttgtcaacaa gtattactat aagtcaacag gatttaaaga
     1261 tgagaaatat ctaatgcact atgccctatc aaagattaat tctaggtcaa gaagagctta
     1321 acatatctat gcaggcaagt attctactac ttagtggaga aaaggataca caaactccag
     1381 ttgagcaggc attcttgcta cagcaaaaac tgagataaat catcccgatc atactttcat
     1441 catatatcca gatcttggac acgaatttta tccttcatcc caatggcaaa ctagccacgg
     1501 accaatacta cagtacgtct tggcagatct ttattcatgg cttgaagatc attctgggtt
     1561 tacacattcc attactttct ctccttcttc ttcctcctcc tcatcccact cttcttctac
     1621 agatcaaggc tagcacagat tcggtggaat gtaagacata attgacacta ttttgcaact
     1681 catcctcctg tgctctatta gcaatagcat ataggtagat tatgaaatgt ataaatggat
     1741 agaaaaagaa atcaggtttg tttctcctct tcttcctctt ctttttcatt tctaacaatt
     1801 tcgatataat ctgatgcctt tttatccaga atattataat gggaatcaga aagagaccct
     1861 ttcttaaaaa gatagattaa ttcagttctt atacgttgta attccaaaat acattgttgc
     1921 ttgtcttctt gatgtaatgt atcataggtt gattgtattc ttgtcaaata tctattgata
     1981 tagcgtctct gaccatattt gtaataccat cctacaaata ctgatgtagc acctacaatg
     2041 ccaccaatag caaaaatata tacttctgga gttattgccg atttaaaatt tgcagttaat
     2101 gtgccaaacc tagaaatttc gagtgtcagc ggattgctgt ttagatcatt tgcaaggtca
     2161 gaccaagatg caaaagcata tccacgttct ggtatggcag tacattggag tatttgacct
     2221 ttgttatagg atgtagaatt ccctgaaata tttttctcgc cattacatcg tatttctcct
     2281 gtatgtggag gattgacatt gaatgttagc cttacagcca cttcattgct atcgccgttt
     2341 ataatagaga tagtgttaga accagtattt gttatgtatg ccctattttc ataaggatta
     2401 attgttatgt gacttgcaac aagtggaaag cccacattac tgggtaggtt cactaacgaa
     2461 tcttcgccgc tatatgactc cttcaaagtg ggatttactc ttatttcttt gaggattatg
     2521 tttttatttt ttttaattgc tgttgttggt agtaatgttg tgtcagtctt ggtcttggtt
     2581 ttgttgttga tatcatctat gtttaaggct ttggtatcta taacggatac tgtatttgat
     2641 gctatattgc tgacgtataa gttgctgcta atagggttaa ttgctatgcc aacaggtgaa
     2701 tcgccaacag aagttatatt gtcgatcaca ttgttagtta gcatgtctat aacagaaaca
     2761 ctatcagaat cataattcgt gacatatagt ctattatttc ctttagcgat atcaattgct
     2821 aaacctgtag gtttttttcc tactgatatt ttagcagtta ctttatttgt tcctccatct
     2881 ataactgata ctgtattagt cataatatct gcaacataca ttttgttaga caaaggatta
     2941 actgctatgc catatggtgc ttttcctact gatattgtat caattacttc attagttatg
     3001 ccatctataa cagatagagt gccgtcatct aagtttgtta catatatcca attagcagat
     3061 ggatttactg ctatgccaac tggcgattta cctacagata aatcaagcaa tttagtgtca
     3121 atagatccat ctataacaga aactgtattt gatcctctat ttgttacgta aactctatta
     3181 ttgagaggat ttatatctat gccataagga aaattgccaa catgaatagt ggcttgaact
     3241 ttgtctgttt ctgtatctat aacagatact gtattagaat attcatttgc tacatatact
     3301 ttctttgtat taggatttac tgctatgcca actgggaaag tgtgtacatc tataccagag
     3361 ttggactcgc tagaagaaga gaatgaagaa gatgcattaa taatatcatc acttctgtta
     3421 ctgtcgatat tactgctgct attgatatta gtagtaaagt tatttgataa tggtgaattt
     3481 tcttgagcaa taacagcatt attatctgta taagttaagt aataatataa tgctaatatc
     3541 ggcaataata ataccattat aagtagcaat acagacgttg taattcttaa cacaactaaa
     3601 acacaagata aataaagtta tttttttgtg tttctaatca ttagatatta tactatatag
     3661 ttta
//
LOCUS       DATAAS010000323         4317 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4133466, whole genome shotgun sequence.
ACCESSION   DATAAS010000323 DATAAS010000000
VERSION     DATAAS010000323.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4317)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4317)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4317
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4133466"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..291)
                     /locus_tag="VHF08_05240"
     CDS             complement(<1..291)
                     /locus_tag="VHF08_05240"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016705 - oxidoreductase activity, acting
                     on paired donors, with incorporation or reduction of
                     molecular oxygen [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX2068083.1"
                     /translation="MKQIAFGVHMPVIGFNSGEKNFLSRKQILSFAQKAESLEYDSLS
                     VNDHIVFRTSWLDAISTLSAVAAITNKIKLGTSILNIVIRNPVVCAKALSAID"
     gene            354..521
                     /locus_tag="VHF08_05245"
     CDS             354..521
                     /locus_tag="VHF08_05245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068084.1"
                     /translation="MISMTALIPILLPLNFLKVTLKLLNAVKATKFGYKLFQKVKKIL
                     SHSYIFGRKMG"
     gene            complement(956..1129)
                     /locus_tag="VHF08_05250"
     CDS             complement(956..1129)
                     /locus_tag="VHF08_05250"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068085.1"
                     /translation="MIVLEKMMKYNIQKPNDKNALIEDIEEDDSDSESDEEGASEEAV
                     DGVDGNGGGDGGE"
     gene            1161..1421
                     /locus_tag="VHF08_05255"
     CDS             1161..1421
                     /locus_tag="VHF08_05255"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068086.1"
                     /translation="MKISRAVLEDAKTILQLQKRAYLSEAKIYNDYGIPPLTQTLEEI
                     NQDFLQQVFLKAVEDGDIIGSVRAYLDKGTVFIGRLIVEPEH"
     gene            1794..2636
                     /gene="trpA"
                     /locus_tag="VHF08_05260"
     CDS             1794..2636
                     /gene="trpA"
                     /locus_tag="VHF08_05260"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004834 - tryptophan synthase activity
                     [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEX2068087.1"
                     /translation="MSQNNNSNNLLIKKFQELSKKNESALICYALAGYPDIKTTKDII
                     STMVDAGADIIEIGIPFSDPIADGPTIQEASYNALIKGITPPKSLDIIHDIKKIYPQL
                     PLVAMTYSNILVRVGFSKFMQQAKQCGIDGFILADMPIEESEEYIKEASNLGLATIFM
                     VSPNTKEQRIKSIASKSSGFLYVVSVIGITGMRESFEKYTANNITRVKEIIANSGIPV
                     AVGFGISNPSHCKYMINAGADAIIVASAIINIIEHYREDKKRMLQELQSFVLSMKNAC
                     SHYR"
     gene            complement(3448..3768)
                     /locus_tag="VHF08_05265"
     CDS             complement(3448..3768)
                     /locus_tag="VHF08_05265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068088.1"
                     /translation="MTEEHSSDQGFLKGVGNITNNQTYISTHLSDELIQSRGNGTFET
                     PDGQSIAWISSAIGRPVDGRWVFHGIILFNNTQSESLSLLNNSIGLSKDTVGNEPNYI
                     WLLK"
     gene            complement(3780..3965)
                     /locus_tag="VHF08_05270"
     CDS             complement(3780..3965)
                     /locus_tag="VHF08_05270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068089.1"
                     /translation="MSLPLSLLIISSVAVLPHFGTDLLAQTPQPSVNEQGTLPLDGAD
                     SIYSANKTKFLGSKIYH"
BASE COUNT         1424 a          733 c          748 g         1412 t
ORIGIN      
        1 gtctatagct gataaagctt tggcacaaac aacaggattt cttataacta tattcaatat
       61 agaagtacca agctttattt tatttgtgat tgcggcaact gctgacaatg tacttattgc
      121 atcaagccaa ctagttctaa atacaatgtg atcgtttaca ctcaacgaat catattcaag
      181 ggattcagcc ttttgtgcaa atgaaaggat ttgttttctt gaaagaaagt ttttttctcc
      241 actattaaat ccaataacag gcatatgaac tccaaatgca atttgtttca ttgtcatata
      301 tcgttacatt aatgaaattt gtttcataag aaatagtttg cgaaattaaa aatatgatat
      361 ctatgacagc tttaattcca attttactac ctctaaactt cctaaaagtg actttaaagt
      421 tgctcaacgc agtcaaggct acaaagtttg gatataaatt attccagaaa gtcaagaaga
      481 tactttctca ctcctatatc tttggaagga agatgggcta gttagtcggc cgaaagggag
      541 ttgaaccttt catatgaagg gctcatctac actctattta agcttctttg aatcctaata
      601 acattccagc ataagaagac tatttcataa ttggaccaaa aacattggtg cttcacataa
      661 tagagacctc agttagtatt tggactcagg acctttgcct taccaacgct gcataggctt
      721 cgctattcaa ttccctatct ccaaaccaca caagccttct cttcgtcttc ttttacgttt
      781 aaatttgaac aatccgaaga tgtccttcta atggcctcat cagagttctt aaataaagca
      841 aggttccctg ctttgggaaa caagacactt tttaaattaa aggtgataat caaatttgtc
      901 ttagagtatt tctagaagaa ggaagtgttt aggaataagt cattagtctt attattcatt
      961 ctccgccatc tccaccacca ttgccatcta ctccatctac ggcttcttct gatgctcctt
     1021 cttcatcact ttcactgtca ctatcatctt cctctatgtc ctcaattaat gcgttcttgt
     1081 cattcggctt ctggatatta tacttcatca ttttttccaa aacaatcata aatattgctt
     1141 ttttgtttta tttcatactt atgaagataa gtcgtgcagt cttagaagat gctaagacaa
     1201 ttcttcaatt gcaaaagcgt gcttatctaa gtgaggcaaa gatctataat gactatggta
     1261 ttcctccttt gacacaaaca ttggaagaga ttaatcaaga ctttttacag caggtattcc
     1321 tgaaggctgt ggaagatggt gatataattg gttcagtgcg tgcttacctt gataaaggga
     1381 ctgtatttat aggacgattg atcgtagagc cagaacatta aaaccaaggc ataggaacta
     1441 tgcttataca atcaattgag aaatacttta caatagcaac aactgctgct gatcgttatg
     1501 agttattcac tgggcataag agttttcgta acttatatct ctatcaaaaa cttgggtacc
     1561 accaattcaa acgaatgccc gtaaacagtt ctcttgttat ggtatttcta gagaaatatg
     1621 tagtttgact agcatatata ttcaagcgca caatacttac aatacaataa gagtaataat
     1681 aataacaata atagaatata cgatataaaa caggatcttt atttaattgt cttttgatga
     1741 ctatcataca ttctgttact atataatatg cgttaaaagt atgcatattt agtatgtcac
     1801 agaataataa cagtaataat ctattaatca agaaatttca agaattatcg aaaaagaatg
     1861 aatctgcact aatttgttat gctttggcag gctatccgga tattaaaact actaaagata
     1921 ttatatcgac tatggtagat gctggtgcag atataattga gattgggatt cctttttctg
     1981 atcctattgc agatggacct actattcaag aagcatctta caatgctctg ataaaaggaa
     2041 ttactcctcc aaagagttta gatatcattc atgatattaa aaaaatatat ccccaactac
     2101 ctcttgttgc gatgacttat tctaatattt tggtaagagt aggatttagt aaatttatgc
     2161 aacaagcaaa gcaatgtgga attgatgggt ttattcttgc agacatgcct attgaagaat
     2221 cagaagagta tatcaaagaa gcgtcaaatc taggtcttgc tacaattttt atggtttctc
     2281 ctaatacaaa agaacaaaga attaaatcta ttgcatcaaa gtcttcagga ttcttgtatg
     2341 tagtatcagt tattggaata actggtatgc gtgaatcatt tgaaaaatat accgctaata
     2401 atataacaag ggtaaaagaa ataattgcaa attctggaat tcctgttgca gtgggatttg
     2461 gcatcagcaa tccatcacat tgtaaatata tgataaatgc tggtgctgac gctataatag
     2521 ttgcaagtgc aattattaat ataatagagc attatagaga agataagaaa agaatgcttc
     2581 aagaattaca atcgtttgta ttgagtatga agaatgcatg tagtcattat agatgatatg
     2641 tacttcccag agtggagcat ttgactaata tgttcatatc agcagagtgg tactatcaac
     2701 ataaacaagc tcttctatac aatcatttta tgcttctagc agataataat tttgtattta
     2761 tatttttatt cagaattggt cctcttcaga aaagaatcga tattaagaat aggcccatca
     2821 aaaataatcc attgacgctt acgcctgatc gtttgtgaac tgttatcgac acaaatttgt
     2881 ggcccaaggg atatgaatcg aatttgactc gattagcgaa gccatttact tcattccgtt
     2941 attaataagc acaaagttag atgagcgttg gtgcgggttc ggtgggatgc aatacactag
     3001 tgtatgtagt tcattgcgaa gagcagtagt catctgagcg atactgctag caaatgacta
     3061 ttgaaatgtt acatgattct ttgacaaagg tcatgcaatt ttgataaata gaatataaat
     3121 gaatctcaat acactattat cctttaatta gcaaaaaata acatttctag gttctaaaac
     3181 accttttcca caatatgggc agtaaattgc attcctctta gtaggagaat atatctctac
     3241 taactggatt atgaccttac aactttgaca acgatatgtt gcagccaatt ttttgtcctt
     3301 gctccttgat tattgcatga gctaatttta ggatttgcaa cataaagtgg acacagaata
     3361 tacgaccagg gaagaaaatc tccatttgat gaagactcta gatgacgcat ggaacagtag
     3421 ttttagttgg atacgtggta gatgatacta tttcaaaagc cagatataat ttggctcatt
     3481 gccaacagta tccttggata aaccgatact attatttagt aaagacaatg attcgctttg
     3541 cgtattattg aataatatta ttccatggaa aacccaacga ccatcaaccg gtcttcctat
     3601 agcagaagat atccaagcaa tactttgtcc atctggagtc tcaaatgtcc cattacctct
     3661 actctggatt aattcatccg ataagtgagt gcttatgtaa gtctgattgt tagtaatatt
     3721 tcctacgccc tttaggaatc cttggtcaga ggagtgttcc tctgtcattc ggtaaggagt
     3781 taatgatata tttttgaacc taagaacttg gttttattag cgctataaat cgaatcggct
     3841 ccgtccaaag gaagggtacc ctgttcgtta acacttggct gaggagtctg tgctaataaa
     3901 tctgtgccaa aatgaggtaa aactgccaca ctggagataa tcaacaagga cagaggtaat
     3961 gacaactttg ttatcctatt caaacgcgtt ctatgaaata tggtgattta aatagatttg
     4021 gattacaaag tggtatctat tttaagtgtt tgtaataagg gtaatagaag tatcaatgaa
     4081 gagattcaat tagccaattt taaaaacatt taatgagttg gagatttctt attgtggtat
     4141 gcttttgtct cctttggatt ggacatacaa cgaccatcaa gccgtaggac gggagactaa
     4201 gttttttatc tatagacctt aatattcttg tcatatgaat ggtgaagagc ccaatatttt
     4261 taacggacta aatacgcaga tgataaacac agcaatcgaa actatgcgaa acgatac
//
LOCUS       DATAAS010000324         8877 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4681577, whole genome shotgun sequence.
ACCESSION   DATAAS010000324 DATAAS010000000
VERSION     DATAAS010000324.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8877)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8877
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4681577"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..351
                     /locus_tag="VHF08_05275"
     CDS             <1..351
                     /locus_tag="VHF08_05275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEX2068090.1"
                     /translation="YKKMSSIVEKSGFIIADVKFEFGRDIRTGEILLGDSLGPDEYRL
                     WLRCHYMPGKSQESYDKQLLRDWLVKIGFKETITEYSKKGEKPPPPIIPKEIAIELSK
                     RYIFAYEKISGKEF"
     gene            complement(529..948)
                     /locus_tag="VHF08_05280"
     CDS             complement(529..948)
                     /locus_tag="VHF08_05280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF371 domain-containing protein"
                     /protein_id="HEX2068091.1"
                     /translation="MVEDEVIFYGHPNVLSLHPRALEITKNTELTLRGDCIIGVGANK
                     ACKDLDPALQRLLKNDNSVVRLSIIAGNRSCTLNGFGSRRLLLLNSQDIVIRKTNFAC
                     SRTLCLNTNKASLDIPREIVRLLQNPKTRAILNINIE"
     gene            1045..1785
                     /gene="psmA"
                     /locus_tag="VHF08_05285"
     CDS             1045..1785
                     /gene="psmA"
                     /locus_tag="VHF08_05285"
                     /EC_number="3.4.25.1"
                     /inference="COORDINATES: protein motif:HMM:NF003075.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000502 - proteasome complex [Evidence
                     IEA];
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal proteasome endopeptidase complex
                     subunit alpha"
                     /protein_id="HEX2068092.1"
                     /translation="MLPAAAGYDRAITVFSPDGRLYQVEYAIETVRRGTLAIGIKSRD
                     GVILAVEEKARKLQISNVTQKIFQVDDHIGVAAAGYIPDARTQVDHARFFAQSNRLIY
                     DEPVDVEGVAKNIADMAQQFTQYAGVRPFGVALILAGVDKNGASIYLTDPSGTYIGYD
                     AVAIGAGSDQVTEFLEKGYKNNISMEEAGALAIESIYLVSEDKTGTRHVKMAIIDNNT
                     KIMRKVEEDEIDKYASIVKEGADKRTSS"
     gene            1855..2538
                     /locus_tag="VHF08_05290"
     CDS             1855..2538
                     /locus_tag="VHF08_05290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEX2068093.1"
                     /translation="MAVRIGNKAPNLKVSEWVQGKPTNIDKEINNVILVEVFQVNCPG
                     CFIYGIPDAINIYRKYNNRNVTVLGIATAFEDFDKNTLDNLKLLLLTGEVIGETRNAL
                     SQYGQLIEGNKLPYKIPFPIAMDSLKKESNVLTERKVMDFIESNVPDFSSFSESDKSV
                     LIERVKQYLKTKQYSAETFEEYGLRGTPSSILIDKNGIVRNITFGANGSIDDMVKDLV
                     KEQNNDKVI"
     gene            2522..3370
                     /locus_tag="VHF08_05295"
     CDS             2522..3370
                     /locus_tag="VHF08_05295"
                     /inference="COORDINATES: protein motif:HMM:NF014637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEX2068094.1"
                     /translation="MTKSYNLNIAIPDSSLLDEQTKRDKSIKISQIARACSIFRVKTI
                     YIYHDVSFRNQKDDLNLLKTILRYLDTPQYLRKILYPRMEILEYAGILHPIKSPHHKD
                     REDIKNIKIGDVRVGVIAKDKGKFYVDVGLGSLVPFKGSGFIGKKVNVLFTSAYPNLQ
                     TREATEEQFDKTYWGYNVKVISNLAKLLNTAQNTEILITYREGEFFKMKEGKLLERMQ
                     YNRNLLVVFGSPKKGVDEILTNEGSSIRHYDFVVNMFPFQGTATVRLEEAIYGTLAIL
                     NHVLTK"
     gene            4704..5702
                     /locus_tag="VHF08_05300"
     CDS             4704..5702
                     /locus_tag="VHF08_05300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEX2068095.1"
                     /translation="MGHRKYSAPRRGSIAFRPRARAKSLEARIRTWPESSMEKTSLLG
                     FAGFKAGGLHILTIDDRERTPNFGKQLLNVSTVIVTPPIRVIGIRGYNLNAYGKHAVF
                     DVYAKDLPKELSRKFDANYSEEAITKSGSILDSINSIMAVVAVTPRKINMSQKKPFVF
                     EIAVSGNNVRAQYDYLKNLLGKEIHASDVFQVGQYIDVFGITRGKGIEGPVTRFGVKR
                     KQHKSRKSVRAVGTLGPISPAVVMYTVARQGQRGFHQRTEYNKRILMLSNTDKDGENS
                     INPPGGFKHFGLVKGDYMVVRGSIPGVPKRLIKMRHPIRNAQKKVIEPKIVEVIAH"
     gene            5699..6517
                     /gene="rplD"
                     /locus_tag="VHF08_05305"
     CDS             5699..6517
                     /gene="rplD"
                     /locus_tag="VHF08_05305"
                     /inference="COORDINATES: protein motif:HMM:NF012782.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEX2068096.1"
                     /translation="MKSNIILGIDGRESNTIALPEIFETPYRPEVIHKVYVNLLSHTY
                     QRQGRYPAAGEIVSAESRNTGLGIARLARARGEGFPRAGQAAGVAGVRHGRVAHPPES
                     WKQIYKKINKKEKQLGLCSAIAATGQKDLIIKRGHKIGRLSQFPIVVSNDIESISKTK
                     DLRKVLVALGLEEDFIRARSSHKARTGTSRRRGRQARSGISALIVVENDDQLERLSGS
                     IPGVEVKSVQRLSVLDLAPGAKPIRLTIFSQNAIEKLKNVKAPILKVMEMMMRK"
     gene            6514..6807
                     /locus_tag="VHF08_05310"
     CDS             6514..6807
                     /locus_tag="VHF08_05310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEX2068097.1"
                     /translation="MSTKQENRSMTVEKASSIIIKPYITEKTFNLIEKENKLTFIVAE
                     KASKNQIVKALQILYESEASEVNTVRTIQGKKAFIKIKAREGARDLATKMGLV"
     gene            6873..7280
                     /locus_tag="VHF08_05315"
     CDS             6873..7280
                     /locus_tag="VHF08_05315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEX2068098.1"
                     /translation="MVREFKFRGYSPEQLQLLSVESLLPLLNSRQRRSLDKRVGKYMD
                     DGKRKLREEIKLLREGKLKSQLKTHVRDMIILPDMIGLSISVYNGKEFTPIHIRPEMT
                     GHYLGEYAITNKRVQHGSPGVGSSRSSLYVPLK"
     gene            7288..7755
                     /locus_tag="VHF08_05320"
     CDS             7288..7755
                     /locus_tag="VHF08_05320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEX2068099.1"
                     /translation="MPNYSYAFQNFDKTKHVRAAIREKDISHKHSREVAVAIKGMSIE
                     KARDFLNDVIRKKIAVPYRRYNNEVAHRSNVRDGFFAGRFPQKAAKEFLKLLDNLETN
                     AEYKGMDLDRLRIISAVVHKGTRLERFTPRAMGRASPKFDNLIHVELVAQEGG"
     gene            7761..8510
                     /locus_tag="VHF08_05325"
     CDS             7761..8510
                     /locus_tag="VHF08_05325"
                     /inference="COORDINATES: protein motif:HMM:NF003219.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEX2068100.1"
                     /translation="MSAVKNVMKNNYRNMELNEYLAETLKDAGFGGVDVQKTPIGTRL
                     TLYVTRPGLVIGRKGTGIKDLTARLEQNFGLTNPQISVLEVPVPELNPKIMSNRIAQL
                     IERGTAFRRASLWTINTIMNSGALGVEVSVAGKLRSERAHFEKHSAGIIPKSGDVAEK
                     VVKVGVSHVLTKMGLMGIQLRIALKNEVPQEFELSDASTNTKQQDVELQKPITADSTL
                     EKDTIDSPTAMSSSTQEQEAVVNRGNTNGQS"
     gene            8497..8709
                     /gene="rpmC"
                     /locus_tag="VHF08_05330"
     CDS             8497..8709
                     /gene="rpmC"
                     /locus_tag="VHF08_05330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000315 - organellar large ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022625 - cytosolic large ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEX2068101.1"
                     /translation="MARVKLKTLREMNDSDLSDKLSDLKADLAKLRSEGAKGTLKKRT
                     GDIRWVRRDIARIMTLLNEGKENRND"
BASE COUNT         3194 a         1361 c         1783 g         2539 t
ORIGIN      
        1 tataaaaaaa tgagctcaat tgttgaaaag tctggattta ttatcgcaga tgttaaattt
       61 gaattcggtc gagatataag aactggggaa atcttattag gtgattccct tggcccggat
      121 gaatatcgac tttggctaag atgtcattat atgcctggaa aaagccagga aagctacgat
      181 aaacaattgt tacgggattg gcttgtaaaa attggtttta aagaaaccat aactgaatat
      241 tcaaaaaaag gagaaaaacc ccctcctcct ataattccaa aagaaattgc aatagagtta
      301 agcaaaagat atatttttgc ctatgaaaaa attagcggga aagaatttta atatgtagta
      361 agaacaatgt catgaagtgc gaaagctttt aaaaggcata tgtatcgaaa gacgatttac
      421 attaatctgt cataacctac aatatcacta ggttatttag actaaacgtc aaggactatt
      481 ttaattactt tccatattgc ggacgtcttt aatatacaat cgctgatatt attcaatatt
      541 tatatttaaa atagcccttg tcttaggatt ctgtaatagt cgtactattt ctctaggtat
      601 atctaaagaa gctttattcg tattcagaca tagcgttctt gaacaagcaa aattggtttt
      661 tctaattact atatcttgag agtttaatag cagaagtcta cgacttccaa atccgttaag
      721 tgtacacgat cgattgccag caattattga aagtcttaca accgaattat cattcttcaa
      781 tagcctttgc aaggcaggat ctaaatcttt acaagcttta tttgccccta cgcctattat
      841 acagtctcct cttaatgtaa gttctgtatt ctttgtaatt tctaacgcac gaggatgaag
      901 agataggacg tttggatgtc catagaaaat aacttcgtcc tcaaccatgg caattggcta
      961 tctgttggtt gctagaatta aacctagcgg cgaaatacta taaggtaaat ttaaattaaa
     1021 cgttacaaag tagttaaaaa tgaattgtta ccagcagcag caggatatga ccgagctatt
     1081 actgttttct cacctgacgg gagattatat caggttgaat atgccattga aaccgtcaga
     1141 agagggacat tagctattgg aataaaaagt agagatggtg ttattctagc agttgaagaa
     1201 aaagctagaa agttgcagat atcaaatgtt acacaaaaaa ttttccaagt cgatgatcat
     1261 attggagtcg ccgcagcagg atatattcca gatgctagaa cacaggttga ccatgcaaga
     1321 tttttcgcac aaagtaatcg actaatctat gatgagccag tagatgtcga gggagtggca
     1381 aaaaatattg cagatatggc tcaacaattt actcaatacg caggtgttag accctttggt
     1441 gttgccttga ttcttgcagg tgttgataaa aatggagcct ctatttatct aactgatcca
     1501 agcggcactt acattggata tgatgccgtg gcaataggtg caggaagcga tcaagtcacg
     1561 gaattcttag aaaagggtta taaaaataat atatcgatgg aagaagctgg tgcactagca
     1621 atagagtcaa tctatcttgt aagtgaagat aagactggaa cgaggcatgt aaaaatggcg
     1681 attatcgata ataatacaaa aataatgcga aaggtagaag aagacgaaat agacaagtat
     1741 gcatcaatag ttaaagaagg agcagataaa agaacatctt cataattttt ccttcaactt
     1801 atagaacata ttatgtagca ttggtttaaa taatgattag ccattttttt aggtatggct
     1861 gtcaggattg gcaataaagc accaaattta aaggtatcgg aatgggttca gggtaagcca
     1921 acaaatattg acaaagagat taataatgtt atcctggtag aagtattcca ggtgaattgc
     1981 cctggttgtt ttatttatgg cataccagat gcaataaaca tttatagaaa atataacaac
     2041 agaaatgtca ctgtacttgg gattgcaact gcattcgaag attttgataa aaatacactt
     2101 gacaatttaa aattgttgct tttgaccgga gaggtaattg gagaaacaag aaatgcactg
     2161 agtcaatatg gccaacttat tgaaggtaat aaattacctt acaagatacc atttcctata
     2221 gcaatggatt ctctaaaaaa agaatctaat gttttaactg aaagaaaggt catggatttc
     2281 attgaaagca atgttcctga ttttagctcc ttttctgagt cagacaaatc agttctaatt
     2341 gaaagagtaa aacaatactt gaaaactaaa caatattcag ctgaaacatt cgaagaatac
     2401 ggcttacggg gaacaccatc ctcaatatta atagacaaga atggcatagt gcgtaatatt
     2461 accttcggag caaacggatc catcgatgac atggtaaagg acttggtaaa agaacagaat
     2521 aatgacaaag tcatataatc tgaacattgc aattcctgat tcttctctat tagatgaaca
     2581 gacaaaacgt gataaaagca tcaagatctc tcagatcgca agggcttgtt caatcttcag
     2641 agttaaaaca atatacattt accatgatgt gtcattcaga aatcaaaaag atgatcttaa
     2701 tttattgaag acgatcttac gttatcttga cacaccgcaa tatctgagga aaattttgta
     2761 tcctcgaatg gaaatattgg agtacgcagg aattcttcat ccaataaagt ctcctcatca
     2821 taaagaccga gaagatatca aaaacatcaa aattggagac gtccgagttg gagtaattgc
     2881 aaaagacaag ggaaaattct atgttgatgt aggtctaggt tcacttgtcc ctttcaaagg
     2941 atcgggtttt ataggaaaaa aagttaacgt attatttaca tcagcatatc cgaacctaca
     3001 gactagagaa gcgacagaag aacaatttga taaaacttat tggggctaca atgtgaaggt
     3061 tatttcaaat cttgctaagc tcttaaacac agctcaaaac acagaaatcc tcatcactta
     3121 tagggaaggt gaatttttca aaatgaaaga aggcaaactt ctggaacgaa tgcaatacaa
     3181 caggaaccta ttagtggttt ttggttctcc aaaaaaagga gttgatgaaa tattgacaaa
     3241 tgaaggatcc agcatcaggc actatgactt tgtggtaaat atgtttcctt ttcaaggaac
     3301 agcaacagtt aggttagaag aggctatata tggaacttta gccatattaa atcatgttct
     3361 gaccaagtaa ctgaatcttt tgctttcaaa tatttattga ttatggagtg acattataaa
     3421 tgctttcagc tagagatgtt gcaataccag aatataacac gttatttaca aatcatctta
     3481 agatagaagc attaacaaat gagttgaaca atgcataaag accttagcat aaagtttttg
     3541 ataataatta aagttatgat cctcttaatt tcaaagagaa agaaaaatga tgcaagcaga
     3601 ctagtaaaat acaattgatt gacaaatata tatataacta agctaatgaa ttggtgcgaa
     3661 gacgagaaaa agatcacatg aaaagaatat tataaattct agtataattc agtgtagcca
     3721 cataacaata aaagttcatg aaattccgta ccaagttgga actggttcag gcactcttta
     3781 tttgctgagt ttttttgtcg agttataaga gtataatagc ccttttttac caacgaatat
     3841 agctaatcat agtgttacca ataacagata ggaaactcga aattagttat gctcggagtt
     3901 acagaataaa tcttcaatta ataagagagt atagtccata ttctgattgg ataggtgaac
     3961 gaatacagaa taaatacgaa taatgttatt aaaggcggcg atagccacac acgttaattt
     4021 atattagaca ctctccactt ttcttactaa tcattagatc aaaagaatca aaagagcttc
     4081 ttcaaagtct atatttatta tgcatctcaa ttatattttt catgcatctc tttgaaaggc
     4141 atcatctcaa agactgtcta ttgctttatt aaatgagaaa ttgtgtttct atttgctaca
     4201 ggatttattg atataatata aagtattatt tcaattttca ttcttcatat aagaaaaaat
     4261 tattgttgat tgataacaat ccagtgttta tgtctaaaag attgaataga gaatgttttc
     4321 ataatgaata ttttagatgc aaaaaagaca attgcaagct tatgtatgtt ataatcataa
     4381 attggttgca tttatttgtc agtatgcacg tgcaatagag aagctataga aagtgaagat
     4441 ggttaaatga ggagaacagc aatattcttg tcattgatta acaataatat aaatttgacc
     4501 agctgtttta ttgataggtg atcgacttaa tcacctaagt atgatctatt gcttttttga
     4561 ttgtcaagaa atcaaaatgc gcgtattttc aaatcttcat tttgtgatgc cgtttattag
     4621 cataattaac cgatagaata gaatctctga tcgaaatttt ggttataaat ttattaaagg
     4681 gattttgagg tgttagttta tcaatgggtc atcgcaaata tagcgctcct cggcgaggta
     4741 gcattgcatt taggccaaga gccagagcca agagtttgga ggctcgcata agaacatggc
     4801 cagaatcttc aatggaaaag acatctttgt tgggttttgc aggttttaaa gcaggaggat
     4861 tacatatctt aactattgat gatcgtgaaa gaactccaaa ttttggaaag cagcttctaa
     4921 atgtttcaac agttattgtt actccgccaa taagagtgat tggcattcgt ggttataatc
     4981 taaatgcata tggaaaacat gcagtatttg atgtatatgc aaaagatctg ccaaaggagc
     5041 tttcacgcaa atttgatgcc aactatagcg aggaggcaat aaccaaatct ggatctattc
     5101 tagatagtat aaattctata atggcagtag ttgcagttac tccacgaaaa ataaatatgt
     5161 ctcagaagaa accatttgtg tttgaaatag ctgtttctgg caataatgtt agagcacagt
     5221 atgactattt aaagaatctt ttaggcaagg agattcatgc tagcgatgtt ttccaagtcg
     5281 ggcaatatat agatgttttt ggaattacga gaggaaaagg tatagaaggt ccagttacaa
     5341 ggtttggtgt gaagcgaaaa cagcataaat caagaaagag tgttcgtgca gtaggaacat
     5401 taggacctat atcgcctgca gtagtaatgt atacagtcgc aagacaggga cagagaggat
     5461 ttcatcaacg aacagaatat aacaaacgaa tcttgatgtt atccaatact gataaagacg
     5521 gagaaaattc aataaatcca cctggcggtt ttaagcattt tggattagtt aaaggcgact
     5581 atatggtagt aagaggatcc attccaggtg tacccaagag gcttattaaa atgcgacatc
     5641 caatacgtaa tgctcagaaa aaagtaatag aaccaaaaat cgtggaagtt attgcacatt
     5701 gaaatcaaac ataattctgg gaatagatgg cagagaatct aatactatag cgttacctga
     5761 aatatttgaa acaccctata gacctgaagt aattcacaaa gtatacgtaa atttgctgtc
     5821 tcatacatat caaagacagg gccgctatcc tgctgcaggt gaaatagtaa gtgcagaatc
     5881 acgtaataca ggccttggca ttgcaagact tgcaagagcc cgcggtgaag gttttccgag
     5941 agcaggacag gccgcaggtg ttgcaggtgt caggcatggt agggttgcac atcctcctga
     6001 atcttggaag cagatctaca agaaaattaa taaaaaagaa aagcagctag gtctctgttc
     6061 tgctattgca gcgaccggtc aaaaagatct aattatcaag cgaggccaca aaattggtag
     6121 actttcacaa tttcctattg ttgtttctaa tgatatagaa tctatttcaa agacaaagga
     6181 tttgcgaaag gtccttgtag ctttaggatt agaggaggat tttattagag caagatcatc
     6241 acataaagcc cgaacaggta cgtcaagaag aagaggcaga caggctcggt cagggattag
     6301 tgccctgata gttgttgaaa atgatgatca gttagaaagg ctgtctgggt cgattccagg
     6361 agtcgaagtt aaatcggtac aaagattgag tgtcttagat cttgcgccag gcgcaaaacc
     6421 aatcagattg acaatattct ctcagaacgc aattgaaaaa ttaaaaaatg ttaaagcacc
     6481 gattctcaaa gttatggaga tgatgatgag aaaatgagta ccaaacaaga aaatagatct
     6541 atgactgtag agaaagccag ctcaattatc attaaaccct atatcacaga aaaaacattc
     6601 aacttgatcg aaaaggagaa taaattaact tttatagtag ccgaaaaagc cagcaaaaat
     6661 caaatagtaa aagcattaca aattctgtat gaatcggaag caagtgaagt gaataccgtt
     6721 agaactatac aaggtaaaaa ggcctttata aaaattaagg ctcgtgaggg tgctcgagat
     6781 cttgcgacaa agatgggtct ggtgtaagga agactgtcat tatttctcgt tagatttaaa
     6841 agtagtatta tgtgatggtg taattgatat aattggtacg tgaatttaaa ttcaggggtt
     6901 actcgcctga gcaattacaa ttattatcag tagaatctct tttaccacta ttgaattcca
     6961 ggcagcgtag gtctcttgac aaaagagtag gcaagtatat ggacgatgga aaacgaaaat
     7021 tgcgtgagga aataaaattg cttcgagaag gtaagcttaa aagtcaatta aaaactcatg
     7081 ttagagacat gataatcctt cctgatatga ttggtctttc tataagcgta tataatggga
     7141 aggaatttac tcctattcac ataaggccgg agatgacagg acattatcta ggtgaatatg
     7201 ctatcacgaa taaaagagtt caacatggaa gtcctggtgt aggatcatcg agatccagtt
     7261 tgtatgttcc attgaagtga tagaattatg ccaaattact cctatgcctt tcagaatttt
     7321 gataaaacaa aacatgtgag agctgcaatt agagaaaaag atatttctca taagcattca
     7381 cgtgaagtgg ctgttgcaat aaagggaatg tcaatagaaa aagcaaggga ttttttgaac
     7441 gatgttatta gaaaaaaaat tgcagttcca tatagaagat ataacaatga agttgcacat
     7501 cgttcaaatg ttcgtgacgg tttttttgca ggtaggttcc cacaaaaagc agcgaaagaa
     7561 tttttaaaac ttcttgataa tttagaaaca aacgcagagt ataaaggtat ggacttggat
     7621 aggttaagga ttattagtgc agtggttcat aaaggaacaa gacttgaacg gtttacaccc
     7681 cgtgccatgg gaagagcaag cccaaaattt gacaatctga ttcatgttga attagtagcg
     7741 caggagggtg ggtgaatata atgagcgcgg taaagaatgt aatgaagaat aattatcgaa
     7801 atatggaact taacgaatat cttgcggaaa ccctaaaaga tgcaggtttt ggcggcgtag
     7861 atgtacaaaa gactccgatt ggaactagac taacacttta tgttacaagg cctggtctgg
     7921 tgattggtag aaaaggtact ggcatcaagg atctaaccgc gagacttgaa cagaattttg
     7981 gcttgacaaa tcctcagatt tctgttttag aagtacccgt tcctgaactg aacccaaaaa
     8041 taatgagcaa cagaatcgca caactaattg agcgaggtac tgctttcaga cgagcttccc
     8101 tttggactat taacaccatt atgaattctg gcgccttggg agtagaggta tcggtggcag
     8161 gaaaactaag gagtgaacga gctcactttg aaaaacactc tgcaggcata ataccaaaga
     8221 gtggagatgt tgcagagaag gtcgtgaaag ttggagttag tcatgtctta acaaagatgg
     8281 ggctaatggg aatacagttg agaattgcat taaaaaatga agttccacaa gaatttgaat
     8341 tatctgatgc gtcaacaaat actaaacaac aagacgtaga attacagaag ccaattactg
     8401 ccgactcaac actggaaaaa gatacaatcg attctccaac tgcaatgtct tcttcaacac
     8461 aagagcagga agcagtagtg aatagaggaa atacaaatgg ccagagttaa attaaaaact
     8521 ctccgtgaga tgaatgacag tgatttgtca gataaattat ctgacctaaa ggctgatctt
     8581 gctaaactta gatctgaagg tgcaaaaggt actctcaaaa aacgaaccgg tgatatacga
     8641 tgggtgcgca gggatatagc tcgtataatg acgctactaa atgaaggaaa agagaataga
     8701 aatgattagt gcagaaaaca ttttagctca tgaattaatt ggactagatg tggaaataac
     8761 taagaaagat aatcttatac cttctaagtt gtacggcaaa atagtattcg aaacgaagaa
     8821 tatgattcta gttaaaacta tttttggaat caaaggagta ccaaaggcaa taattaa
//
LOCUS       DATAAS010000325         3079 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_908505, whole genome shotgun sequence.
ACCESSION   DATAAS010000325 DATAAS010000000
VERSION     DATAAS010000325.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3079
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_908505"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..851)
                     /locus_tag="VHF08_05335"
     CDS             complement(<1..851)
                     /locus_tag="VHF08_05335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068102.1"
                     /translation="MSKEAIRIGLIAPEDLSKRGAYSMKVYFEADILSTFGEVSLYGY
                     NLQHTDKYRCYDLSTISSYSRSMRKSPKVFLALCKIIIKSKFDYVFLPTVFHPFFPLL
                     FIASKMGSSKIIYDLRDPIYGTMIAMKDEVYSRTGNRTLAWLMTKLSILIEAMLIISS
                     DYILTVSPLLVDYIKRFKIRNRDKIFLYYNYVPSEVKDVELDELPTLLQRVLSEKVVI
                     CYFGLIQTGIRGIETIFKVLKESSNKDVFLVLMGEIDNRSHWESLIKELECEKQILII
                     DPKPKPEA"
     gene            complement(844..2715)
                     /locus_tag="VHF08_05340"
     CDS             complement(844..2715)
                     /locus_tag="VHF08_05340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068103.1"
                     /translation="MIFPLFHFFGFAKLNWDAFNIYLRDALVISISNSIPAYYPESFY
                     DGNIPLIFNSYLSSVMYSYGLNILNISDFEGDISLLMQYTNTVLSFVVFATLFATILL
                     LRSFACQVFKDKYLVASTIIIFLTAPLLNQFLYAWSLYADLFFAFATLLVLVFSYRYL
                     QTDDKGSRYFSLLMIVLGISLAIATKTYGYLLLVIIPLLCMKALRRKDFVLFNFKSKD
                     SSSAFPNYLSKVIVLALFAILIVFASLYTIRGIMLTGSPFGYSVERFVNFSDNERWAD
                     NIISLAGIHIYVENYPLLNQITALLLSYGLFPVLLVPLLVGVILLIKKEFWGLGIFAI
                     YIVFYYIMFATVLELRVDRHLFSIMALLSPVYIYGLKIIITRYLRWTGGKMILCITII
                     SVLLQLPIFAAIYTDFQIENIFPSMYYWYTTNNLANVLVYSLIALGIAIILGRIIFPV
                     IAKPRREWYTFGILFGITVLAMIGWLTFNILKTFESYEDFIRISYKSKHFGYPIALQE
                     FVEINGDNSTNKVLYLHGLGTEYLTMAHASYIKIDDFRMLADIKDVIEEKNPHKVREL
                     LLSKNIKYFLYPSESNDNYRDLLALSNVTNNALIFSDPSSFSTEKIRLNGWWDLYIV"
     gene            2873..3079
                     /locus_tag="VHF08_05345"
     CDS             2873..3079
                     /locus_tag="VHF08_05345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068104.1"
                     /translation="MPVKLVMKLRIEIKNKLNPKLQAITSPLDKVTRINLWVTTNCTK
                     YPGIKSEKNSITSSNINKIVDRLK"
BASE COUNT         1129 a          528 c          518 g          904 t
ORIGIN      
        1 gcttcaggtt taggctttgg atctattatc aaaatttgtt tctcgcattc taactctttt
       61 atcaaagatt cccagtgtga cctgttatca atctcaccca ttagaactag aaatacatcc
      121 ttattgctcg actcctttag cactttaaaa attgtttcta tccctcggat tccagtttgg
      181 ataagaccaa agtagcatat tactactttc tcgctaagaa ctctttgtaa tagagtagga
      241 agctcatcaa gttcaacatc cttaacttct gaaggaacat aattgtaata taagaagatc
      301 ttgtcacggt ttcttatctt aaatctcttg atatagtcta caagtaaagg cgataccgtc
      361 aaaatataat ctgaagatat aatcaacatg gcttctatta aaattgataa tttcgtcatt
      421 aaccaggcaa gagtcctgtt tccggtccta gaataaactt catccttcat ggctatcatc
      481 gttccgtata tgggatcacg taaatcataa attatcttac ttgaacccat tttagaagca
      541 ataaagagta ggggaaaaaa gggatgaaaa actgtcggga gaaaaacgta atcgaatttg
      601 gatttaatta taattttaca aagagccaaa aatactttag gagattttcg catgctacga
      661 ctatatgaag aaattgtgga gaggtcataa cacctatact tatcagtgtg ttgcaaatta
      721 tagccataaa gagaaacctc gccaaatgta ctaagtatat cggcttcaaa gtaaaccttc
      781 atagaatagg ctcctctttt tgagagatcc tctggtgcaa tcagccctat tcgtatagcc
      841 tctttagaca atatacagat cccaccaacc atttaagcga attttttcag tactgaaaga
      901 agaagggtca ctgaaaatta aagcattgtt tgtaacatta gaaagcgcta acaggtccct
      961 ataattatca ttactttcag aaggataaag aaaatatttt atatttttag acaatagtaa
     1021 ttcgcggact ttgtgggggt ttttctcttc aattacatct tttatatcag caagcattct
     1081 aaagtcatct attttgatat atgatgcatg agccattgtg agatactctg ttcctaaacc
     1141 atgtaagtac agaaccttat tggtagaatt gtcaccatta atctcaacaa attcttgcaa
     1201 tgcaatcgga tagccaaaat gtttactctt atagcttatg cgaataaagt cctcgtagct
     1261 ttcgaatgtc ttcaatatat tgaatgttaa ccaaccaatc atagccaaaa ctgtaatacc
     1321 aaaaagaata ccaaaagtat accattccct gcgaggtttt gcaataacgg ggaaaataat
     1381 cctacctaag attatggcga tacctaaagc aattagtgaa tagactaata cattagcaag
     1441 gttattagtg gtataccaat aatacattga tggaaagatg ttttcaatct ggaagtctgt
     1501 ataaattgca gcaaatattg gcagctgtag taaaaccgat attatggtta tacataatat
     1561 catcttccct ccggtccatc tcaaatatct tgtaataata attttaagtc catatatata
     1621 tacaggtgac agtaacgcca taatggagaa cagatgcctg tcaactcgca attctaaaac
     1681 agtggcaaac atgatatagt aaaatactat gtatattgca aagattccta atccccagaa
     1741 ctctttctta ataagtaaaa ttacaccaac tagcaacgga actagaagca ctggaaatag
     1801 tccatagctt aatagaagtg ctgtaatttg atttagtagt ggataattct ctacatagat
     1861 gtgtattcct gccaaagaaa tgatattatc tgcccaacgt tcattatctg agaaatttac
     1921 aaatctctct actgaatagc caaaaggact acctgtcaac ataatacccc taatcgtgta
     1981 gagagatgca aatactatga gtattgcaaa caacgctaaa acaatcactt tggataaata
     2041 attaggaaat gctgatgatg agtcttttga cttaaaattg aaaagtacaa agtcttttct
     2101 tctaagtgct ttcatgcaaa gtagaggtat gatcacaagt agcagatacc cgtaagtctt
     2161 tgtagctatt gctaaagata tacctaggac tatcataagt aaggagaagt atcttgaacc
     2221 tttatcatct gtttgcaggt atctataact aaaaacaagt actaaaagag tggcaaaggc
     2281 aaaaaatagg tcagcatata aggaccatgc atacaaaaat tgattcaata gtggtgctgt
     2341 cagaaaaata attattgtgc tagcaaccaa gtatttgtct ttgaatacct gacacgcaaa
     2401 tgaccgtaga agaaggatgg tagcaaataa ggttgcaaat actacgaaac tcaagacggt
     2461 attcgtatac tgcattaaaa gagaaatatc gccctcaaaa tcgctgatat taagtatatt
     2521 tagaccataa gaatacataa cagatgaaag ataggaattg aaaattaatg gtatgttgcc
     2581 atcatagaat gactcaggat aataagctgg aatagaattc gaaatgctga ttaccagagc
     2641 atctcttaga tagatattaa atgcgtccca attgagtttt gcaaaaccga agaaatggaa
     2701 taaaggaaaa atcaaaaata ataaagaaaa taaaaataag ctttctaaag gtagccttgg
     2761 cgctttaaac tgtgaggata acttaagtat ccaatttcga tttaatagta gaactataat
     2821 gagcataata gaagacataa tgaaataact gtaaaatatc tctctcaagc caatgccagt
     2881 gaaactggtg atgaagctga ggattgaaat caagaataag cttaatccaa aactacaggc
     2941 gataacttct cccttggata aagtaacgcg gatcaactta tgggtaacaa caaattgcac
     3001 caagtatccg ggtataaaaa gcgaaaagaa cagcataacc tcatcaaata ttaacaaaat
     3061 cgttgacagg ttaaaatga
//
LOCUS       DATAAS010000326         2646 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_360139, whole genome shotgun sequence.
ACCESSION   DATAAS010000326 DATAAS010000000
VERSION     DATAAS010000326.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2646)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2646)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2646
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_360139"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1638)
                     /locus_tag="VHF08_05350"
     CDS             complement(<1..1638)
                     /locus_tag="VHF08_05350"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEX2068105.1"
                     /translation="MANNTQNIKTEIIHGVENVIDAEIRCFFANRKIDTCMNYTRPPL
                     AIEIEPIKKAFLDAKIRGARLRYITEITNTNISYCKELMGMVNELRHLDGIKANFMIS
                     ETEYLAPVILYEEGKIASQIIYSNVKEVVEQQQYIFDTFWAKSIPAEQKIKEIEEGII
                     HYGTRAIENSDEIIKEISRLTASSNKLDTCLNSGGMQYSYNHFFHIKKKLLDKQKEGK
                     HKGIRYITNIEHDSLHLARLYLEHGIQIKHVKNLPPVNFGISDKEIALTIEKMDGGKR
                     IQSLLISNEPVYVKHFTSIFEELWKNGIDSAARIKEIEEGIEPEFLEVINDHEKVSQI
                     VIDLVKSAKSEVLLLLPSSKGMVRMDRLRGFDYLINASQNGATINIICPLSEENSHIV
                     KKISQKAPNIRILNGTNHSSGMLIVDNARFLKVEIRKPNSEIFSEAIGFAIYSNSRHS
                     VDSFKSFFELLWNERKLNEELNRADEMQKEFINIAAHELRTPIQPILGLSEVLHDKIK
                     DTKQIQLVDTIIRNAKRLQRLTEDILDVSKIESQSLNL"
     gene            complement(2004..2354)
                     /locus_tag="VHF08_05355"
     CDS             complement(2004..2354)
                     /locus_tag="VHF08_05355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2068106.1"
                     /translation="MKKESKQGEKCELTDIWEVLGRRWSLFILKNLSTKEVIRFNELK
                     RLLSGISSTVLADRLLELEREGLISKKIYPEIPPRVEYRLTTRAKELEVVLKELGKWA
                     SRWKTPAITKNTAT"
BASE COUNT          767 a          464 c          378 g         1037 t
ORIGIN      
        1 tagatttaat gactggcttt caatttttga aacatcaagt atgtcttctg taagtcgttg
       61 taatcttttt gcatttctta tgatggtatc tactaattga atctgtttgg tgtcttttat
      121 tttatcatga agaacttcag acaatcctag tattggttga ataggagttc gtaactcatg
      181 agctgctata ttgataaatt ccttctgcat ctcatctgct ctgttcagtt cttcatttag
      241 cttacgctca ttccaaagca gttcaaaaaa tgatttgaat gaatctacgc tatgtctgct
      301 gttagaatat atcgcaaagc caattgcttc tgaaaaaatt tcggaattag gttttctgat
      361 ctctactttc aagaatcttg cattgtcaac tatgagcatt ccagatgaat gattagtacc
      421 atttaaaatt ctgatattag gtgccttctg agatattttt ttgacaatat gtgaattctc
      481 ttcagataag gggcagataa tatttatagt tgcaccattt tgagatgcat ttataaggta
      541 atcgaagcct ctcaatctgt ccatccttac cattccttta ctactgggaa gaaggagtag
      601 aacttcactc tttgccgatt ttaccaaatc tataacaatc tgacttactt tttcatgatc
      661 attaataact tcaagaaatt ctggttctat tccttcttca atttctttta ttctagcagc
      721 agaatcaatc ccatttttcc atagctcttc gaaaatagaa gtaaaatgct ttacatatac
      781 aggctcattg ctaattaaaa gactctgaat ccttttgcca ccatccattt tttctattgt
      841 tagtgctatc tctttatcgg agatcccaaa atttactggt ggtagatttt ttacatgttt
      901 tatttgaata ccatgttcca ggtacagtct cgcaaggtgt agactatcat gttctatatt
      961 agtaatatat ctgatccctt tatgttttcc ttctttttgt ttatctaata gttttttctt
     1021 tatatgaaaa aaatggttgt aactatattg catcccaccg gaattcaagc aagtatctag
     1081 cttatttgag ctagctgtaa ggcgagaaat ctcctttata atttcatctg aattctctat
     1141 tgctcttgtc ccataatgta ttattccttc ttcaatttct tttattttct gttctgctgg
     1201 aattgacttt gcccaaaaag tatcaaaaat atactgctgc tgctctacaa cttcctttac
     1261 attgctgtat ataatttgtg atgctatttt tccttcttca tacaaaatta caggagcaag
     1321 gtattctgtt tcgcttatca taaaattggc tttgattcca tccaaatgtc gaagctcatt
     1381 aaccattccc attagttctt tgcagtaaga gatgttagtg ttggtaattt cagtgatata
     1441 tcttaatctt gcacctctaa ttttagcatc aagaaaagct ttctttattg gttcaatttc
     1501 aatggctagt ggtggtcgtg tataattcat gcaggtatcg attttcctat ttgcaaagaa
     1561 acatcttatt tctgcatcta ttacattctc aaccccatga attatctcag tctttatatt
     1621 ttgcgtatta tttgccaaat atagtatgaa gttgttctat ataagataat agatcaaaat
     1681 caacatgacg aacagccatt ctttcagtct taactttcat ttgttataat tttcttatct
     1741 aatacttgtt atactgtaac aaagacgttt attgaatata tataaagtgt atgtagaaat
     1801 aggttaatgc atattgtatt gcttcaattc actcagttct atggctatgc atatagagag
     1861 agataatgta ttagtaaaca cagaaaggct gaagaagaag aataaccgta tcatacagct
     1921 ggtatcatct ctatgaatga ttttaacaat ctaatttgtt tttttcttct tgattatcgt
     1981 gatatattta atatttatct tatctatgta gctgtatttt ttgtaatcgc aggtgttttc
     2041 catcggctag cccactttcc taattccttt agtaccactt ctaattcttt tgctcttgtg
     2101 gttagacggt attcaactct tggtggaatt tcaggataga tctttttaga aataagaccc
     2161 tcacgttcaa gttctaataa cctatctgct aatacagtac tgctgatgcc ggataataat
     2221 cgcttcaatt cattgaaacg tatgacttct tttgtactaa gattctttaa tataaataga
     2281 gaccaccttc ttcctagtac ctcccaaata tcagttagtt cacatttttc accttgtttt
     2341 gactcttttt tcataatatc gctctagatt gtttttagca ttaagtatta tttaactact
     2401 atgacaaaag tcataagaaa atattctttt caaagtaaac gtattgaaca atataatgat
     2461 gtgattctca tattctttta ctcaataaaa tgttcagaca tagttgtctg aacggatttc
     2521 atcctctagg gatgagcact cgaaacaaga tagaccttaa tatcctatga aaataaacat
     2581 ttttagaact tctgttgttc ccattaattc ttaattcttc agaatatctt gttatcattc
     2641 tgaaat
//
LOCUS       DATAAS010000327         6246 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_360545, whole genome shotgun sequence.
ACCESSION   DATAAS010000327 DATAAS010000000
VERSION     DATAAS010000327.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6246
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_360545"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(350..529)
                     /locus_tag="VHF08_05360"
     CDS             complement(350..529)
                     /locus_tag="VHF08_05360"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HEX2068107.1"
                     /translation="MKTITCRDAGFDCDYIVKGETEEEVMKRGAEHAMKDHGMEEEDI
                     TPEFKEKVRGLIRTS"
     gene            875..1039
                     /locus_tag="VHF08_05365"
     CDS             875..1039
                     /locus_tag="VHF08_05365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068108.1"
                     /translation="MDSEPFQVICKYPSDENIDNEDFDSIEVKIKDKHLGPGHNNIGY
                     RRIFCSQVDK"
     gene            complement(1080..1397)
                     /locus_tag="VHF08_05370"
     CDS             complement(1080..1397)
                     /locus_tag="VHF08_05370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068109.1"
                     /translation="MSLEKKESRREEVEGQKNKEDNDNDDNDNILTKEVVSWKGFEYA
                     LRQPNASLFNKMLSEYLENKEEYVSAFKSRESQHSVESLFIALIFQQQKMISKLIQRL
                     KLD"
     gene            complement(1904..2875)
                     /locus_tag="VHF08_05375"
     CDS             complement(1904..2875)
                     /locus_tag="VHF08_05375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068110.1"
                     /translation="MTKILPYRNKRDNIIIVIVSLITSIVITNSFIIFSPDEDSRFYF
                     SGLTSSFAIAVGLVISIVMVYRYKISIKKQKEMQRVLLNQNDDINPHHYYDNNKIHLS
                     VCLFFAFWLVASVNWIFEDQKAPGVLIADILYYLGYASFGYFVYSLYYHFFRREFEPF
                     ILILIGVLILVPLIFIVDTIVSTLRLLSTQTVDISLVVVNASYPILDAIVIFPIALMF
                     WGVRRISSRHKNTAPDEKESNEKGKSPSSVFVSGTNSIWVLLLLVAMVLSAAGDSGFA
                     YTSAFDVTTVQNYIWIWNVLYNSDHLCLAAALIGYRHFFSFNKIDTL"
     gene            complement(3115..3321)
                     /locus_tag="VHF08_05380"
     CDS             complement(3115..3321)
                     /locus_tag="VHF08_05380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068111.1"
                     /translation="MPSNSQSVNPVQDLLDRVTDLQRILEDLEPNIRNNRVQSQYENV
                     RTKLADAKSAVWALGTVLERYSTS"
     gene            3746..4543
                     /locus_tag="VHF08_05385"
     CDS             3746..4543
                     /locus_tag="VHF08_05385"
                     /inference="COORDINATES: protein motif:HMM:NF013885.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic resistance protein"
                     /protein_id="HEX2068112.1"
                     /translation="MNLHPRHLVNTFRKPRALMVFTIGKLILLPCIVYVITSLVYPKL
                     ALSATLLSGISTGLGAPFAINFIGAGGIGTIAALVTISSLVVPVTLPFILYVFFEDTG
                     EFVIPIYDISFLLVIALFIPLSLGWSTRKYVPRVSKFVSGNSLFLSVIFIILINFSMF
                     ARFSQYFFIDQSLVLTSLISASLLFVLYLLVGYLLALSIKGQLITTRINGIIAMTYIN
                     NILVFVVAERFFDIETAALAALYNIPYYVGLLVLRMKYSRYRNQESK"
     gene            4737..5333
                     /locus_tag="VHF08_05390"
     CDS             4737..5333
                     /locus_tag="VHF08_05390"
                     /inference="COORDINATES: protein motif:HMM:NF018712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1326 domain-containing protein"
                     /protein_id="HEX2068113.1"
                     /translation="MVENCTCNMLCPCWFGVKELMIMDQGYCAAPILFRIQNGSIDGI
                     DLKGRDVVLAVDFPGPTILDGNATYRLYIDEVADERQRKDLEAIFKGKRGGPMEMISS
                     LSTKWLPTQSTKIEVKDDGNNMTVTVGNFGKMKYGELKNESGRTMTLQGAGFASAFGM
                     DGETFALAPSASQWSDPDLPHQFSTKSGVMANFSWHGS"
     gene            complement(5422..6018)
                     /locus_tag="VHF08_05395"
     CDS             complement(5422..6018)
                     /locus_tag="VHF08_05395"
                     /inference="COORDINATES: protein motif:HMM:NF019430.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Spy/CpxP family protein refolding chaperone"
                     /protein_id="HEX2068114.1"
                     /translation="MVNTHIFLLTTMITVVVMLGLASSISSTLFAQSPLHSGHAATND
                     TISKYTGQEDRIIKSLSSEDIKSLQTGTGDAFGGMAKLAELNGYPGPIHVLDLANKLK
                     LTDEQKKNITTIYNDMKKKAIELGQKIVNIERIANEEFVNKSITDIQIKQLILKSAEI
                     YGQLRYTHLNTHLKMLDILTSEQIALYNNLRGYSYSGQ"
BASE COUNT         2019 a         1053 c         1086 g         2088 t
ORIGIN      
        1 aggaaggaga tgcaataatc ataggaagtg atgatatgca taagaaaaga tcagagtttg
       61 ctgcaaaaag tgctgctctc cttactataa tgaatcatga aaaacatagt gattagatat
      121 aattactagt atttgggaga aaaattctaa aaagtcattt ttagcacata attttggagc
      181 taaagctaaa atgtattgaa tcatacttcg gctataaata agaagcaaat atttgtacaa
      241 accgcaattc atgaccacga atcaaaaatc tcagttaacg ggtactagtc ggagtgctaa
      301 gaagagcgtc ttccataata acagggaata caagtataat atgtgaaggt taagaagtgc
      361 gaataagtcc tcttactttt tctttgaatt ctggagtgat atcttcttct tccataccgt
      421 gatctttcat ggcatgttca gcaccgcgtt tcataacctc ctcctctgtc tcacctttta
      481 caatatagtc acagtcaaat cctgcatcgc gacatgtaat tgttttcata tatgggtttt
      541 acaccgctgt gtttttaagc atttatttat taaaaataaa ttaatagaat acgtaaattc
      601 agaaaattta gggtctttta tgatttaatc attcttttaa ctaatttggg ttcaggacag
      661 taatctgttc agaaaaatgg ttggcttatc tgaactatct gaactatcct aggaagatca
      721 gcagcaaata caggaaaggt acaactgcat aaatcaacaa atcggaaact cctaaattat
      781 gcacacaaga ttacaaaaag acaacaaagc agtctaattg aatatatgag ataatatcca
      841 taaagatata tcatctaaca aggagtatgc gttagtggat tctgaacctt ttcaagttat
      901 atgtaaatat ccttctgacg aaaacataga caacgaagat ttcgacagta ttgaggtcaa
      961 aataaaagac aaacacttgg gccctggaca taacaatatt ggttatcggc gaattttctg
     1021 ctcccaagtg gataaataga aataggaatg aaaatagaac ttattctaac caaacaaatt
     1081 taatccaact ttaaccgctg gattagttta cttatcattt tttgttgctg gaatattaat
     1141 gctataaata gtgattctac cgagtgctga gattctctgg atttgaaagc tgaaacatac
     1201 tcttctttat tttccaaata ttcacttaac attttgttaa acaaagaggc atttggttgt
     1261 ctcaaagcat attcaaatcc tttccatgac acaacttcct ttgtgaggat attatcgttg
     1321 tcatcattgt cattgtcttc tttatttttt tgtccttcca cttcttctcg tctactttct
     1381 ttcttctcta aagacattta gaaatataga aacaaaacag aagataataa ggatcgatta
     1441 gtaaaagggc tttttatgac ttaaagaata atacaaatta ggcttaacaa taaagaaatt
     1501 atcatgaaaa gctttaactg ttattatgat tttactccta cattatcaga acctatctgc
     1561 aagcaatgcg gcttttgtta ttattgtaga gattttacat gttctcatca aaataattcc
     1621 ttttaaaatg agggctaaca acaatgatat aatttttctt aacagagaca tagattatca
     1681 aataaactta agtagtaatt gtttcacact acaatggtat ttagtctaag caatgaataa
     1741 aattaagtgg cggcttttgg aatagaagtc tcataataac ccctgtcatt tttagttatg
     1801 taactatcag aacttattat aacttattta tggacaagct cagcttttgt ttaatatcaa
     1861 ttagatagaa atatatctga aaatataatc tcgcccttta gtgttacaat gtatctattt
     1921 tattaaagga gaaaaagtgt ctataaccaa tcagcgctgc agccagacaa agatggtcgc
     1981 tattatataa gacattccat atccatatat aattttgaac tgttgttaca tcgaatgcag
     2041 aagtatatgc aaatccacta tcaccagcag cagataatac cattgctaca agcaataata
     2101 gtacccatat ggaattagta ccagagacaa aaacagaaga aggtgattta cctttctcat
     2161 ttgactcttt ttcatctgga gcagtatttt tgtgtctact acttatgcgt ctaactcccc
     2221 aaaacattaa tgctattgga aaaatcacta ttgcatctag tatagggtat gaagcattaa
     2281 caaccacaag tgaaatatcc actgtttgag tagaaagtaa tctcagggtg cttactatcg
     2341 tatcaacgat aaagattaga ggtactaaaa tgagaacacc tattaaaata agaatgaatg
     2401 gttcaaattc cctcctaaaa aaatgataat atagactgta tacgaaataa ccaaatgatg
     2461 catatcccaa atagtaaaga atatcagcta taagaacacc aggggctttt tgatcttcaa
     2521 aaatccaatt gaccgaagct actaaccaga atgcaaaaaa tagacaaaca gagagatgaa
     2581 ttttgttgtt atcataataa tgatgagggt taatatcatc attttgattc aagagtactc
     2641 gttgcatttc tttttgtttt ttaatgctta tcttgtatct gtacaccatt acaatggata
     2701 ttactaagcc tactgcaata gcaaaacttg atgttaatcc agaaaagtaa aatctactgt
     2761 cttcgtcagg agaaaaaatg ataaatgaat ttgtaatgac aatcgatgta atcaatgaga
     2821 ctatgactat gatgatattg tctcgtttgt tcctgtaggg caggattttt gtcatttatc
     2881 ctcctttagt gctcaacaag tagatatcat ctccgcatag tttaacttta ttattttagt
     2941 taggagatag tagataaatg gtccaattaa actaaagact gggctcatta ttatgctagt
     3001 actttttgca gttcatttat agtcttagac ttttttcttt tttatttttc ttatattgga
     3061 taatcagaaa taatcaagct tgatctttta ttctttcaat aggtaatgta tagcctagct
     3121 ggtgctatat ctttctaaaa ctgtaccaag ggcccatacg gctgattttg catcagcaag
     3181 ttttgttcta acattctcat actgactttg tacccggtta ttacgaatgt taggttcaag
     3241 gtcttctaat attcgctgga gatctgtaac tcgatctagt aggtcttgaa ctggattaac
     3301 agactgtgag ttagatggca tatataccaa ttatgatccc attagtatta atctatatac
     3361 taatggatct cttaaaagaa tcagatttac tatcagggac tcaaggattt gcttggattt
     3421 actagacaaa atggttgcca gacttgatat gtacgacgga ctattttttg agacaaactg
     3481 atccgaacgc tgagtagaac aagctaatct ggttcactca aaactataag gtacctcgct
     3541 attctaaatg attgataatg agagacggat taaacaattc cgattccgat gatctttctc
     3601 caataagaag aggaggtata ggcaatatgt tggtactgct ctcagcgatg gtgtctatca
     3661 tcacaggggt cctatttcca acaactggta tgtctcttga accgtatcta ttagtctggc
     3721 tcggtggtct attgtacgta aatctatcaa cctacatccc agacatttgg ttaatacttt
     3781 tcgcaagcca agggcgctta tggttttcac gataggtaaa cttatcctac taccgtgtat
     3841 agtttatgtc ataacatcat tagtttatcc gaaactagct ttatctgcga ctctactgag
     3901 tggcatttca actgggcttg gtgcaccgtt tgcaatcaat ttcataggag cgggtgggat
     3961 aggtacaatt gctgctttgg tgacgatctc ttctcttgtt gtcccagtaa cattaccctt
     4021 catcctctat gtgttttttg aagataccgg ggaatttgta ataccaatat atgatattag
     4081 ctttcttctc gtgatagcat tattcattcc cttatctctt ggatggagta caagaaaata
     4141 tgttcctagg gtttctaaat ttgtttcagg caattcacta tttctttctg taatctttat
     4201 catattaatt aacttctcca tgtttgcaag attttcccaa tacttcttta ttgatcaatc
     4261 attagtccta acatccttga tctccgcatc actactcttt gtcctttact tgctagtcgg
     4321 gtatttatta gctctatcca ttaaagggca attaataaca acaagaatta atggcatcat
     4381 tgctatgacg tacataaaca atattcttgt ttttgtcgtt gccgaacgct ttttcgatat
     4441 tgagacagct gcacttgctg cattgtataa cattccttat tatgtaggtt tactagtact
     4501 cagaatgaaa tattcgagat atagaaatca agaatctaaa tgagaatgat attctaatat
     4561 ttactgcagc atgttatata cagactacag gttactttca ttatagttgt aaagtgtttg
     4621 tttaagctat tctgattgag aaatagggtt actgataata ttttctttca taccgtcaag
     4681 gataaatatg aagttgcgat ctggttcata acatgacgtg gaatttaagt ggaaaaatgg
     4741 ttgaaaactg tacctgtaat atgttatgcc cctgttggtt tggtgtaaaa gagttaatga
     4801 ttatggacca gggttattgt gccgctccca tacttttccg tatccagaat gggagcattg
     4861 atggtatcga tctaaaagga agagacgttg tattggcggt tgattttccg ggtccaacga
     4921 tacttgatgg taacgccacc tatcgacttt atatcgacga ggtagctgac gaaagacaac
     4981 gcaaagatct agaagccata ttcaagggaa aaagaggtgg tcctatggaa atgatatcat
     5041 cactctcaac aaaatggctg cctactcaga gcaccaagat cgaagttaaa gatgacggga
     5101 ataacatgac agtaacagtt ggtaattttg gtaagatgaa gtacggggag ctaaaaaacg
     5161 agtcaggccg cacaatgaca ttacaaggag cagggtttgc atctgcattt ggaatggatg
     5221 gcgagacatt tgcattggct ccaagtgcta gtcagtggtc tgatccagat ttaccccatc
     5281 aattctctac aaagtctggt gtaatggcaa acttcagctg gcacgggagt tagcatacat
     5341 ttccgcaagt agtatggtgg attagctcaa ttgatgaaag gtgataagta agttatgata
     5401 atgctattct gtattagttc tctattggcc gctgtatgaa taaccacgta aattattgta
     5461 tagggcaatt tgctcagagg taagaatatc tagcatcttc aaatgagtgt ttaaatgagt
     5521 ataccgaagt tgtccgtaaa tttctgcact tttcaagatt agttgtttta tttgaatatc
     5581 agttattgat ttattaacaa attcctcatt ggcaattctt tctatattga caatcttctg
     5641 tcccaactct atcgctttct ttttcatatc attgtaaatt gttgtaatat tctttttctg
     5701 ctcatcagta agtttaagtt tatttgccaa atccaataca tgtattgggc caggataacc
     5761 gtttaattct gccagcttag ccataccacc aaaggcatct cctgttcctg tttgtaatga
     5821 ttttatatct tcagacgaaa gagattttat tattctgtct tcttgacctg tatactttga
     5881 aatcgtatca ttagtggcag catgtccaga atgtaaggga ctttgagcaa atagagtgga
     5941 tgatatggat gaagcaagcc ctaacattac tactacagta atcattgttg tcaacaagaa
     6001 aatgtgagta tttaccatga gtgttcataa aatgaattct atttgtatga atataaaatc
     6061 tagtagaata atcacgttta aaatatccaa accagtttga aaaagatagc aaatcaagtg
     6121 attcatctaa aaaagaaatc attatagaaa aacctttacc tttaccatat tgtggctcgc
     6181 taggtaataa tgtagataca ttattcactg tagctacggt gcttttctct agtctgtctg
     6241 tatagc
//
LOCUS       DATAAS010000328         1703 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1988207, whole genome shotgun sequence.
ACCESSION   DATAAS010000328 DATAAS010000000
VERSION     DATAAS010000328.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1703
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1988207"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(353..1324)
                     /locus_tag="VHF08_05400"
     CDS             complement(353..1324)
                     /locus_tag="VHF08_05400"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEX2068115.1"
                     /translation="MTNNKRILSLTHEQDVDGLFSSAILKNAFPDTLVFLTNYGHKNM
                     QRAAAIIKFNVSRSSKNGTIVITDLGIDDTEDINPIEDAAVEARNYGWDFVWLDHHVW
                     SEEIKKRAQSFASLILSRDEMKCTAELVYETFAKNRRTCEKIAKFAHIVDFRLSEVHK
                     LPPLPELISYYRSLTNPYPKLQSIVNKASKGVFWDDDLQEDFEYLYLPIKESAISTAM
                     KSLTICDIYNHKVAITESPRIISKSILSEKIFLEKPEVSLVILFAPDGKVSIRRKPGS
                     DIKCDVIGRRLDGGGHSYAAAGIIKNNNESLKIGQVSQAIEAILKDL"
BASE COUNT          547 a          280 c          272 g          604 t
ORIGIN      
        1 actgctaaag atagaaccaa ccaacggtga agaagaatta tgtaaatgat gagaataaat
       61 actatataaa atgtatgtac aaaaaaggtt agataatgaa gtttctaatg ctattccata
      121 aaaagacaac catgcagaaa agagattctg tgacgagatg gcttaagtat tctgttctat
      181 tcacgtggtg ttgcttaagt tataacccat agtaaaacaa gaacaaggcc atcctccttt
      241 taatcataat caatactcta tattgactcg tattgacttt atattctgat aaaatattta
      301 agacagaaat ttatgtctat aacacttgtt ttgaaactta tataattgtc tactataagt
      361 ctttcaaaat ggcctctatt gcttgtgata cttgtcctat ttttagactt tcattattat
      421 tttttattat acctgctgct gcataactat ggccaccgcc gtctaatctt cggcctataa
      481 catcacattt tatgtctgat cctggctttc tcctgatact tacttttcca tctggagcga
      541 atagaatcac aagacttact tctggtttct ctagaaatat tttttccgac aaaatgcttt
      601 tagatattat tcttggcgac tctgtaatgg ctactttgtg attatagata tcgcatattg
      661 tgagagattt catcgcagtg gatatggcag attcctttat tggaaggtat aggtattcaa
      721 agtcttcttg caaatcgtcg tcccaaaata cacctttaga agctttattt acgatagact
      781 gtaattttgg ataaggatta gttagactac gataataact aataagctca ggaaggggtg
      841 gtaacttgtg cacttcagac aaacgaaaat caacaatatg tgcgaattta gctatctttt
      901 cacatgttct tctatttttt gcaaatgttt cataaactaa ttctgccgta catttcattt
      961 catctcttga taagatcaaa gatgcaaacg actgcgctct tttttttatt tcctcagacc
     1021 aaacatgatg atctagccat acgaaatccc aaccgtaatt tcttgcttcg acagctgcgt
     1081 cttctatagg gttgatatct tctgtatcgt cgatacctaa atcggtgatt acaattgttc
     1141 cattcttgct tgatctagac acattaaatt tgattatggc agcagccctt tgcatatttt
     1201 tgtgtccata gtttgtaaga aaaactaaag tatcaggaaa agcattcttt aaaattgcac
     1261 tagaaaataa tccatctaca tcctgttcat gagtaagcga tagaattctt ttattattgg
     1321 tcattattct tcttttttct tcttatccct ttaccatata ataatgatag ttacaataag
     1381 aaagtatgtt tatactcatg aattgataga attttaattt ttgtaatgat aagatggtta
     1441 ggttattttc tttaggatct ctctcactat attatattta agggtgattt ctggcttgta
     1501 acataagaat taaacgacat taaaaatagt tttaatagcc acctattata ggaaaaaagg
     1561 ttaatgtatt ttgacgacca ggagcggcga caatgagaaa taagatcaat gttgtgaggt
     1621 taggatttgt cggacatctg aagattaaga aataatagcg gttagcatta aatactaaaa
     1681 aataacataa cacgctcaag ttt
//
LOCUS       DATAAS010000329         8104 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3059791, whole genome shotgun sequence.
ACCESSION   DATAAS010000329 DATAAS010000000
VERSION     DATAAS010000329.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8104
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3059791"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(664..831)
                     /locus_tag="VHF08_05405"
     CDS             complement(664..831)
                     /locus_tag="VHF08_05405"
                     /inference="COORDINATES: protein motif:HMM:NF015561.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068116.1"
                     /translation="MSDTDTLGTVTYECMRCGTSVSVEELSRLPEIKCICGFRVFRKA
                     RQPIVKQLKAI"
     gene            complement(1100..3772)
                     /gene="ppdK"
                     /locus_tag="VHF08_05410"
     CDS             complement(1100..3772)
                     /gene="ppdK"
                     /locus_tag="VHF08_05410"
                     /EC_number="2.7.9.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050242 - pyruvate, phosphate dikinase
                     activity [Evidence IEA];
                     GO_process: GO:0015976 - carbon utilization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, phosphate dikinase"
                     /protein_id="HEX2068117.1"
                     /translation="MLKPIYFFDEADSKNKTLIGSKGAGLAEMTQLGLPIPPGFIITT
                     EICAKFYEGGRRLPDGFMYEVRKAMKKLEILSKKQFGDVSNPLLVSVRSGAPVSMPGM
                     MDTVLNLGINDDTVQGLAKQSKDSRFAWDTYRRFIQMFGKIVLNVEEKLFDEISIGAE
                     NADEDHLRKMTLASKMFCENKIGKKFPEDPYKQLELAIIAVFKSWMGKRATEYRRQYK
                     ISPEMANGTAVIILEMVFGNMSHDSATGVLFTRNPESGEKKLYGEYLVNAQGEDVVSG
                     KATPKPINLLSSELPNVDKELRIAAESLEKHFREAQDVEFTVEKGNLYLLQTRTAKMN
                     ALATVKTSVDMFHEGLINRTSALARINPEELEQILYPIINDKSNYVPLARGIGASPGA
                     VSGIVVLNEARAESLGTKGEKVILVKEYTKPEDVPAIFKSAGIVTSRGGKTSHAAVVA
                     RGMGKPCIVGCSQIEIDERASRFTIDRKCSIHEMQKITIDGTSGDIYAGEVPTVKPEI
                     TSELKELLQWACDVKIIKIRANSDVPESAVLARKYGAEGIGLCRTERMFNQHDRITQF
                     VTMIMADGQEERRHVLAELEPLQRSDFKTILKEMEGLPVTIRLLDPPLHEFLPKEEDL
                     LNQIFELRSQLQSDNLEILNKEKLLKRVHELSEINPMLGHRGVRVGLSFPEIYEIQIR
                     AICEAAAELFKEGIHVQPQIMVPQVGMLEEFAQVRLIFESIKSEVEYRNSTKLKIKFG
                     SMIEVVRACLIADDIAKLADFLSFGTNDLTQGTFSFSREDAESKFLPLYLDKGLVSMN
                     PFQTIDRRGVGKLMKIAIDLAKGVKRDIEIGICGEHGGDPRSIEFFTEIGLDYVSASS
                     HRIPIAILAAAQSAINRDEKRPNYTNNLPCFNDV"
     gene            4101..5156
                     /locus_tag="VHF08_05415"
     CDS             4101..5156
                     /locus_tag="VHF08_05415"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEX2068118.1"
                     /translation="MSQRMLAAVFHSPNVITLEERQLSKTENNILIRVTACAVCGYDA
                     RVFRNGHHKVRTPVILGHELCGELLQTVPAHNGKVIESGTRVIVSPIISCLNCKYCKN
                     EQYNLCTNLREIGSTVDGGFAQYISIPEQILQIGGIIPVPSALSNEEAALVEPLACCI
                     NGFYQMGKIDCESQVAIIGDGPIGLLHLQLSKLYGAKTIMIGKNAERIHKAKSIGADQ
                     VVFAHDLERTRDNILQHTNGLGTNAVIVATSNPAALNLAMAIASKNSKINIFGGMPKE
                     THVSLDPNWLHYNQISLIGSFSSTPYMLQEAARLAANKQIDLGKIISHRFSLDRIEEA
                     IEVTEQYYGLRAVINSF"
     gene            complement(5301..5942)
                     /locus_tag="VHF08_05420"
     CDS             complement(5301..5942)
                     /locus_tag="VHF08_05420"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF016362.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HEX2068119.1"
                     /translation="MHPELLARAISGVSLETTAELFRIRARIVSELVAERVLDFLSNN
                     GIGTSSGSKILFSKEDRLKIAILALKMGCDIEQISIQLDWKDFEALTSKILRLSGYKT
                     AVHVFFSKPRMEIDVIGTNSKFAIAVDCKHWKNSSLSTLSSYVKKQIERTKILLAKES
                     NISSAIPMILTLHYNKVRFIEGTPVVPITEFNSFLNGLEDNISGVYVLYSKNR"
     gene            complement(6093..6761)
                     /gene="cofC"
                     /locus_tag="VHF08_05425"
     CDS             complement(6093..6761)
                     /gene="cofC"
                     /locus_tag="VHF08_05425"
                     /EC_number="2.7.7.68"
                     /inference="COORDINATES: protein motif:HMM:TIGR03552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043814 - phospholactate
                     guanylyltransferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-phospho-L-lactate guanylyltransferase"
                     /protein_id="HEX2068120.1"
                     /translation="MFAIVPVKNFESGKSRLASLLTVEERVKLSELFLDYTLKTLTNT
                     SAISNVVVVSSDKRAEEIAKIHNVKFLQEKKNQGVNAAVALADVYISEYAVDATIVIP
                     QDLPLLLPEDIERICTSAQEHEKCLVICPSLRFDGSNALLRRPPLLISTNYDNDSYNV
                     HIKKAKASDAIIKIIKTKRIMTDIDTVEDVINLIKINRRSKDNINKAVGFLSSKIKIF
                     NLIP"
     gene            complement(6770..7693)
                     /gene="cofD"
                     /locus_tag="VHF08_05430"
     CDS             complement(6770..7693)
                     /gene="cofD"
                     /locus_tag="VHF08_05430"
                     /EC_number="2.7.8.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043743 - LPPG:FO 2-phospho-L-lactate
                     transferase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-phospho-L-lactate transferase"
                     /protein_id="HEX2068121.1"
                     /translation="MITVLAGGTGSIKLIRGLASQTRDLTIISNVGDNIWLYGLYICP
                     DIDTVIYGLADILDEQQGWGIKNDSFGFLQQIQMLGEQAWFKLGDRDLATHVIRTNML
                     KNGKSLSEITESMRVRHGISSKIIPATDSDIETKVVTDKEEMHIQEFWVKHKGVPEVR
                     RVIYKGSDKASINPQLIQTIKQSEMVVVAPANPITSIAPILTIKIIKKNLIAERKKIV
                     AISPLIGDRAVSGPAVKYMKAMRLQISPLGVAEYYSDFISKFIISPTDNNLSSKIQNL
                     GMKVYETDILMNNRNDERRLASYLMSYIRSA"
BASE COUNT         2487 a         1533 c         1293 g         2791 t
ORIGIN      
        1 ccaatatttt tatatgtctg aagaaagtga catagatgaa atagttgaag atgactttga
       61 agaagatttg gacgaagata tatccgatga tttcgatgaa gagtaggtga ataaagacgg
      121 ctcattatat acacccaaac aataattttc accaccaaga gacggataac tacacaccta
      181 ttgattaaaa aatttagtta acatataaaa aattctaatg attaaccctg agacaaattt
      241 gtgtgggtgt tgagatatta tatagttagt acaggtcaga tttatcagtt ttaagtctta
      301 accaaggccg aaatcctaat aatattgttc tcagattttt ctttttttat atttgtagaa
      361 tttttattaa ctctcagaaa taacaaattg agaaattcct tcattattgc ttataatcac
      421 ttaatatatc acgatacctc aagtccttat aagctatgta ttttacatat tcaccatagg
      481 tcatatcaaa agagcagtta gagcatttaa cgaaattaaa gtcatccgaa agttcagcag
      541 cctccttaca atcaggacaa cgaattttca tattcaccta tttacaagca acttataaga
      601 aggttttgag tcctcacgca ggacgattta gtgcctataa aagaattcta gaatatagta
      661 atctcagata gccttaagtt gctttacgat tggctgccta gcttttcgaa atacacgaaa
      721 tccgcagatg cactttattt caggtaatct tgataactct tcaaccgata ctgatgtccc
      781 acatcgcatg cactcataag ttactgttcc cagagtatct gtgtctgaca ttcactaata
      841 tcttataata tccgaattta actcttatgt atcaaataaa atgatttgaa ttcttctttg
      901 atttttattt atctggagaa attcaagcaa tttcccttgg cagattttgc tcattcgatc
      961 ttctgctatt cagacaagct tctatgaatc tctttttcta ttttggtatt attaatgcat
     1021 ttttctatat taaagttatt tcattattaa tatccttttt tcaagattct ataattcact
     1081 aaattgttat agagtatatt taaacatcat tgaaacatgg gagattattt gtataattgg
     1141 gtcgtttttc atcgcgatta atcgccgatt gtgccgccgc tagaatagcg attggaattc
     1201 tgtgcgaaga tgcgcttaca taatcgaggc caatttcggt aaagaattcg attgaacggg
     1261 ggtcgcctcc atgttcgcca catattccta tttcaatatc tcttttaacc ccttttgcaa
     1321 gatcgattgc tattttcatt aatttgccta cccctcgacg gtcaatagtc tgaaacggat
     1381 tcatgctaac aagacccttg tctaaataaa gtggaaggaa tttgctttca gcatcttctc
     1441 tactaaaact aaaagttcct tgagtaagat catttgtacc aaaactcaag aaatctgcaa
     1501 gcttagcgat atcatcggct atcaaacacg cacgaactac ttctatcatg cttccaaact
     1561 taattttcaa ttttgtgcta tttctatatt caacctcact cttgatcgac tcgaagataa
     1621 gcctaacttg agcaaactct tcgagcattc caacctgagg aaccataatt tgaggctgta
     1681 catgaattcc ttctttgaac aattctgccg ctgcttcgca aatggctctt atctggatct
     1741 cgtaaatttc gggaaatgac aaacccactc taactcccct atgtcctagc atgggattta
     1801 tttctgataa ttcatggact cttttgagaa gtttttcttt atttaggatt tcaagattat
     1861 cagattgtag ttgtgagcga agttcaaaga tttgattaag taaatcttct tcttttggta
     1921 gaaattcatg gagcggagga tccaataatc taatggtaac aggaagccct tccatttctt
     1981 ttaaaatggt cttaaaatcg gatctctgga gtggttctag ctctgccaaa acatgtctcc
     2041 tttcttcttg gccatctgcc ataatcattg ttacaaattg agtaattcga tcatgttgat
     2101 tgaacattct ctctgtacgg caaagaccga taccctctgc accatatttc cttgctaaca
     2161 cagcactttc cggcacatct gaattagccc taatctttat aatcttcaca tcacaagccc
     2221 attgaagtaa ttcttttagt tctgatgtaa tctctggttt gacggtgggg acctcaccag
     2281 cataaatatc gccactagtt ccgtctatag tgatcttttg catttcatgt attgaacatt
     2341 ttctatctat agtgaatctt gaagctcttt catcaatttc aatttgagag cagcctacta
     2401 tacacggctt acccattcca cgtgctacaa cggctgcatg tgaagttttt ccgcctctac
     2461 ttgtaacaat accagcagat ttaaaaatgg ctggaacatc ttctggtttt gtatattctt
     2521 tgactaaaat tactttctcg cctttggtgc ccaaagattc tgctcttgct tcatttaaga
     2581 caacaatgcc actgacagcg ccaggcgaag ctccaattcc tctggctagt gggacatagt
     2641 tagatttatc attaattatc ggatatagaa tctgctctaa ttcttctgga ttaattcttg
     2701 ccaaagcact agtcctatta atcagtcctt catgaaacat atcgacagag gtttttacag
     2761 ttgctagtgc attcattttt gcagtccgtg tctgcaggag gtataaattt cctttttcaa
     2821 cggtaaattc tacgtcctgc gcctctctga agtgtttctc taaactttcg gcggctatgc
     2881 gcaactcttt gtcaacgttt ggcaattctg aagaaagtag atttattggc tttggagtag
     2941 ccttaccaga gaccacatct tcgccctgag cattcacaag atattctcca tataattttt
     3001 tttcaccact ctctggattt ctagtgaata agactcctgt tgcactatca tgactcatat
     3061 taccaaaaac catttcgagg attattactg cagttccatt agccatttcg ggtgaaattt
     3121 tgtattgacg tcggtattcc gttgccctct tgcccatcca agatttaaaa actgcaatta
     3181 ttgcaagttc taactgttta tagggatcct caggaaattt ttttccgatc ttgttttcac
     3241 aaaacatctt agacgctagc gtcatcttcc tgagatgatc ttcatctgcg ttttctgctc
     3301 ctatggagat ttcgtcgaat agcttttctt cgacattaag aactattttt ccaaacattt
     3361 gtatgaatct acgatatgtg tcccatgcaa atctagaatc cttgctttgc tttgctaaac
     3421 cctggactgt atcatcattt attccaagat tcagaacagt atccatcatt ccaggcatag
     3481 agacaggcgc acctgaacga acagaaacca agagtggatt agatacgtca ccaaattgtt
     3541 ttttacttaa tatttcaagt tttttcattg ctttgcgtac ttcatacata aatccatcag
     3601 gcaaccttct gcctccttca taaaattttg cacaaatttc agtcgtaata ataaaaccag
     3661 gtggtatagg cagaccaagt tgtgtcatct ctgctaatcc agcaccctta cttcctatca
     3721 gtgttttatt tttactgtct gcttcatcaa aaaaatatat tggttttaac attcagtcga
     3781 tgtcactatc aaaattatga tcttttaatt ttatatattc tgcgaatttt aaccttcatc
     3841 tattaggttt tggtgaatgt cttgacatat catgttcttt ttccacatca caattttatt
     3901 tagtgaattg gactgttgcg ataatctgat cattttatta aatgttatct gaattctatt
     3961 ataataattc aaggattatt atatagttaa tataacggaa gaagcgagaa ttttcttaaa
     4021 aaatcatatt gtaataacat ctactgctcc caattaatat atatggtaaa taacgataca
     4081 tcttaattaa atacttgtta ttgtcacaga ggatgcttgc cgcagtgttt catagtccga
     4141 acgtcataac cctagaagag agacagcttt cgaaaactga aaataacatc ttgatacgag
     4201 tcactgcctg cgctgtctgt ggttatgacg ccagagtttt tagaaatgga catcataagg
     4261 taaggacacc ggttatatta ggacatgagc tttgcggaga actacttcaa acagtacctg
     4321 cacataatgg aaaggtaatt gagtcaggta cgagagttat tgtctctcct ataatatcct
     4381 gcttaaattg caaatactgt aaaaatgagc aatacaactt atgtacaaat ttaagagaga
     4441 taggatctac tgttgatggt ggctttgcgc agtacatcag tatacctgaa caaattcttc
     4501 aaataggagg tattatacca gttcccagcg cccttagtaa cgaagaagcc gctttggttg
     4561 aaccactagc atgttgtata aatggttttt atcaaatggg caaaattgat tgcgaaagcc
     4621 aagtagctat aattggagat ggtccaattg gattacttca tctccagctt tcaaagctat
     4681 atggcgcaaa aactattatg attggtaaaa atgcagaaag aatacacaaa gcaaagtcta
     4741 ttggagcaga ccaagtagta tttgctcatg accttgaacg aaccagagac aatatattac
     4801 aacatacaaa cggtctcgga accaatgcag tgatagtggc cacaagtaat ccagccgctt
     4861 taaacttagc aatggctatt gcgagcaaga attcaaaaat aaatattttt ggaggaatgc
     4921 caaaagaaac acatgtctca ctagatccta actggcttca ttataatcag atttctttaa
     4981 ttggaagctt tagttctaca ccgtatatgt tgcaggaagc tgctagactt gcagctaata
     5041 agcagatcga tcttggtaag ataattagtc atagattctc acttgaccgt atagaagaag
     5101 caatagaagt tactgaacaa tattatggct tacgagcagt aataaacagt ttttaaatta
     5161 aactatatgt aggatattct ctcactcttt ctctagctgt cattggatta ttattgttcg
     5221 taatttcatt ttgtaatgca ctttgatatt caactacaca atgtttgtca tttatgtaga
     5281 attgaaggca atagtctcag ttatctattt ttactataca acacataaac gccagatata
     5341 ttgtcttcta gtccatttaa aaaagaattg aattcagtta tgggcacgac cggtgtaccc
     5401 tctatgaatc taactttgtt ataatgaaga gtcaatatca taggtattgc agaggaaata
     5461 ttactttctt ttgcaagtaa tatttttgtc ctttctattt gtttttttac atacgaagaa
     5521 agagttgata ggctactatt tttccagtgt ttgcaatcca ctgcaatagc aaactttgaa
     5581 ttagttccaa tgacatcaat ttccatccga ggtttcgaaa aaaatacgtg aaccgctgtt
     5641 ttgtaccctg ataatctaag aattttcgat gtcagagctt caaaatcctt ccaatctaat
     5701 tgtattgaga tctgttctat atcacagccc atcttaaggg ctaaaattgc aatttttaat
     5761 ctatcctctt tagaaaacaa tattttactt cccgatgaag taccaattcc attattactt
     5821 aagaagtcca aaactctctc tgcaacaagt tcacttacga ttctggctct aatcctaaat
     5881 aattcggctg ttgtttccaa tgaaacccca gatatagctc gggccagcaa ttctggatgc
     5941 attgccctga ataaaatact tcactgttat ttcaatgtgt tgaacaacac tattaaaata
     6001 tactaacgat tattaaaaat acgccatctt ttcacaacat atttgtctat aaagaaaatt
     6061 tttggttatt tttatcgtca atttaatacc cactaaggaa tcagattgaa tatctttatc
     6121 tttgatgata gaaaaccaac agctttattt atattatctt tgcttctcct attaatttta
     6181 attagattta ttacatcttc gactgtatct atatcggtca taatcctttt tgttttaata
     6241 atctttataa tcgcatctga tgcttttgct tttttgatat gaacattata actatcattg
     6301 tcataatttg ttgatattaa tagcggaggt cttcgtagca gagcattcga gccatcgaat
     6361 ctaagtgaag ggcatattac caagcatttt tcatgctctt gtgctgatgt gcatatacgt
     6421 tctatatctt ctggtaaaag caaaggcaga tcttgtggaa ttacaatcgt agcatctaca
     6481 gcatattctg agatatatac atcggccaaa gcaacagcag cgtttactcc ttgatttttt
     6541 ttttcttgta aaaattttac attatgtatt ttagcaattt cttctgctcg tttatcgctt
     6601 gacactacaa ccacgtttga tatggcagag gtattagtca aagtctttaa ggtataatca
     6661 agaaatagct cagatagctt tacacgttct tcaaccgtca atagagatgc taatctagat
     6721 tttccacttt caaaattctt tacgggcacg atcgcaaaca ccttcaaagt caagcactcc
     6781 ttatatagct cataaggtat gatgctaatc tcctttcgtc atttctattg ttcattaaga
     6841 tgtcagtttc atatactttc atgcctagat tttgtatctt tgacgataaa ttattatcag
     6901 ttggagatat aatgaatttg ctaataaaat cagaataata ctcagctaca cctaagggag
     6961 aaatttgcag tctcattgcc ttcatatact ttactgctgg tccgcttact gctctatctc
     7021 caatcaaagg agaaatagca acgatttttt ttctctcagc aataagattt ttttttataa
     7081 tcttgattgt aagaatagga gcaatacttg taataggatt tgctggagcg acaacaacca
     7141 tttcagattg ttttatagtt tgaattaatt gtgggttaat acttgctttg tcgcttcctt
     7201 tataaataac tctacggacc tcaggcactc ctttatgttt aacccaaaac tcttggatat
     7261 gcatttcttc tttatcagta acaacttttg tctcaatatc gctatcagta gcaggaatta
     7321 tttttgaaga gatcccatgc ctgactctca tggattctgt gatctctgag agactttttc
     7381 catttttaag catattagtt cttatgacat gtgtggctag atctctatca ccgagcttaa
     7441 accaagcctg ctcgcctaac atctgaatct gctgtagaaa accaaaagag tcatttttta
     7501 tcccccatcc ctgttgttca tcaagtatat cagccaaacc ataaataaca gtgtcaatat
     7561 caggacaaat ataaagtcca tatagccaaa tattatcacc tacgttggag attatagtga
     7621 gatctcgcgt ctgggatgct agtccacgaa ttaattttat agagccagtt cctcctgcga
     7681 gaacagtaat caacagttag gtcttattat aatgccacaa tgtataattt tcggaattat
     7741 tattaatatc atgtattgtt ttacaacatt acaagatagc gccaaagaga tataattaga
     7801 aatgctttat actgcataca ataaaatgga atattgattg ttgataataa tactgtgctt
     7861 tgttaatcct ataatctgaa caaatagggt ctaatgaagc agacgataac gtgcaatatc
     7921 ttcaaaacgg aagcttgtaa tgagtgatct tcaactcata ttctatatgc aatataagaa
     7981 acattaagat ttagaaaatc agaatcatag gaacaatcta ttatgtcttt tacaaagatt
     8041 attattgttg aaaaaaaaca tgttttaaca atttacttgg caagaatatt taggtatggc
     8101 gatt
//
LOCUS       DATAAS010000330         4245 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4691132, whole genome shotgun sequence.
ACCESSION   DATAAS010000330 DATAAS010000000
VERSION     DATAAS010000330.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4245)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4245)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4245
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4691132"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2662)
                     /locus_tag="VHF08_05435"
     CDS             complement(<1..2662)
                     /locus_tag="VHF08_05435"
                     /inference="COORDINATES: protein motif:HMM:NF017964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HEX2068122.1"
                     /translation="MVRTLDKTHTVLSYIEGSLKNVMIVEGENKHQGFIFSLLNPPVP
                     LGGNIVSLDIYVDEIPIPKKSIFIATSEDVINASALSEYRPIPFKPFQSARFLIIKED
                     GLEEKKKHKIVILSKLEGFEQIIIPFTFSDYAGEQRERIFLSSDLVDDQESATTNEDT
                     IFKNFTNPLILSGKKAYIVCSSNGSLSANWTWMGAKYDNGGLYVPPARAFGRILVEIS
                     MDDGIRKRLPNFVVSSRHEKGLLSTRHEVAGLQVKRTLFVPVENRGFVMRLELDLLDK
                     YSDFSKVGLRKKIKKTKRKIRVHFLIDGNITSYGLAAISQSNYSKLLTTDNCLQIQTS
                     AKKGVAHYYGTIGVAPRHLRPSKILMDSFDNDLELSYDLEIEAGKSHEISLVGAGSFS
                     SSKDCIKEYRFIRDNYRQLLADTREHFITVFSSTLYAESTSKQNPTVAKLLKALDKAK
                     VSMEYLKAEYDELGAGICAGLPRFPNYWARDTGWALRGYLSMEDYYFVYSIIENFLHY
                     QAKKTSSIAKKGELPMIISGQAFLHNTTYGSADSTFLFPWAIHEYVLATGDIGYLEKR
                     WKSITDLVNWGFLKDSDGDGLVEHGFTGVAEKLPIQDSTWMDHIDRRKSANDIQALFY
                     ESLKIGSDLARIVGDNYNREKWQKSAEQLRDRIDLEYWNATTKFYHDTIRKDGSKDPS
                     IRPNALVLLMTDAVRDRAKAEYVLTRIEKDDITTAWGVRTLSALDPKYHPSLYHDGAV
                     WPLVTGWAAISEIKFKRKEQALYYIESMAERILSENGMFAETYRGDRPEPFNSCILQA
                     WSVGMYTYALREMMLGMKMNMIENKIQFEPQIPESLRNNSVPIKFEHIFQTSKGSSRF
                     QILVDAYSEKISVQFKNIGANKAPEILSNTY"
     gene            2887..3768
                     /gene="folP"
                     /locus_tag="VHF08_05440"
     CDS             2887..3768
                     /gene="folP"
                     /locus_tag="VHF08_05440"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR01496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEX2068123.1"
                     /translation="MTYIGKVLVGDNYPARVMGIINTSPESFYKESIKTSTKEIVETA
                     IEMQNSGADIIDIGSMSTAPYLQTIISIEEEIKRMKQAINIVRKSCNLPISIDTPRSR
                     VAKEAITFGANAINDITGLKYDKEMADIVSKSNLPVIVGAYNKNKSLPKANLDKISGT
                     IKLLKESITIAKRAGISDDNIIIDPSIGFFRVDGKNPFFTEMKDVPWYSRDIEVISKL
                     NNIKKLSKPICISVSRKSFIGKLLKLDTEDRLIPTLVCEVISTLNGANLIRTHNVRET
                     VQALTMLKLLAKKPPII"
BASE COUNT         1432 a          792 c          683 g         1338 t
ORIGIN      
        1 aatacgtatt actgagaatc tctggcgcct tattagcacc tatgtttttg aattgaacag
       61 atattttttc actataggca tcaactaaga tttggaatct gctagaccct ttggaggttt
      121 gaaaaatgtg ctcaaactta atagggactg aattatttct taaggattca ggaatctgcg
      181 gttcaaactg gatcttgttc tcaatcatat tcattttcat ccctaacatc atctcacgca
      241 aggcataagt atacatcccg acagaccaag cctgaagtat acaagaatta aatggttcag
      301 gtctatcgcc tctatatgtt tctgcaaaca tgccattttc agacaggatc ctttctgcca
      361 ttgattctat gtaataaagt gcctgttctt tccttttgaa tttaatctca cttatagcgg
      421 cccatcctgt aactagaggc caaacagcac catcatgata aaggctcgga tgatacttag
      481 gatctaacgc gctcaatgtt ctgacgcccc aagctgtggt aatatcatct ttttcaatcc
      541 ttgtgagaac atattcagct ttggctctat ctcgaactgc atcagtcatc aaaagtacca
      601 atgcattagg gcgtatactc ggatcctttg agccatcctt tcttattgta tcatgataaa
      661 atttggtagt ggcattccaa tattctaaat caattctatc tcgtagttgt tcggctgact
      721 tttgccattt ttccctatta taattatctc ctacgatcct cgctagatca cttcctattt
      781 tcaaactttc gtaaaacagg gcttgaatat cattagcact tttccttcta tcgatatgat
      841 ccatccatgt agaatcttgt ataggtaatt tttcagcaac tcctgtaaat ccatgctcta
      901 ctaatccatc accatcagaa tctttcaaaa atccccaatt tacaagatcg gtgatggatt
      961 tccatcgctt ttccaggtag ccaatatcac cagtagctaa cacatattcg tgtattgccc
     1021 atggaaaaag aaaagtagaa tcagctgacc cataagttgt attatgtaaa aaagcctgcc
     1081 cacttattat cataggtaac tcacctttct ttgctattga tgatgttttt ttagcttggt
     1141 agtgtagaaa attttcgatt attgaataga caaaataata atcttccata gacaaataac
     1201 ctcttaacgc ccaaccagta tctctcgccc aataattagg gaatcttggt agtcctgcac
     1261 aaattcccgc tccaagttca tcgtattcgg cttttaaata ttccatactc acctttgctt
     1321 tgtctaaagc tttgagtagt ttcgcaacag ttggattttg ttttgaagtt gattctgcat
     1381 ataacgtaga agagaagaca gttatgaagt gctcccgggt atcagctaag agctgtctgt
     1441 aattatctct tataaacctg tattctttta tacaatcttt agaactgcta aaactgccag
     1501 cgccgacaag agaaatctca tgactctttc ctgcttcaat ttcaaggtca taagatagct
     1561 ctaggtcatt atcaaaagaa tccattagaa ttttagaagg cctcaaatgt ctcggtgcga
     1621 ccccaattgt tccataataa tgagctacac cttttttggc acttgtttgt atttgcaggc
     1681 aattatccgt tgtaagcaac tttgaataat tactttgaga aatagcagca agaccataac
     1741 tagtgatatt accatcaata agaaaatgaa ctcgaatctt tcgtttggtt ttttttattt
     1801 tcttccttaa acctactttt gaaaaatcgc tatatttatc taatagatca agttctaagc
     1861 gcataacaaa tcctctattt tctacaggta cgaataatgt cctttttact tgcaatcctg
     1921 ctacttcatg cctagtagag agaagccctt tctcatgtct ggaagacaca acaaaatttg
     1981 gaagccgctt acgtatacca tcatccatag aaatttcaac taaaatccga ccaaaagctc
     2041 gtgcaggtgg cacatataat cctccattat cgtatttagc acccatccat gtccaattgg
     2101 cagaaagtga tccgttagat gaacaaacta tatatgcctt ttttccagat aatatcaatg
     2161 ggttcgtaaa gttcttaaaa atggtatctt cgtttgttgt agcagattct tgatcatcaa
     2221 ctagatcaga agacagaaag atcctttctc tctgttctcc tgcataatcg ctgaaagtaa
     2281 agggaataat tatctgctcg aagccttcaa gtttactcaa aattacaatt ttgtgtttct
     2341 ttttttcttc caatccatct tcttttatta ttaagaatct tgcactctga aaaggcttaa
     2401 atggaatagg tctatattca gaaagcgctg atgcatttat gacatcctct gaggttgcaa
     2461 taaaaatcga tttctttggg attggaatct catctacata gatatcaagc gatacaatat
     2521 ttccgcctaa aggcactggc ggatttagca aagagaaaat aaatccctgg tgtttattct
     2581 caccctcgac tatcatcaca ttttttaaac ttccctcaat ataggagagt acagtatgtg
     2641 ttttgtctaa tgtccttacc atccaactac acctaactac cgggtatcat cagcagatga
     2701 acgaacaacc ctcttaaatt ttaagctata aaatacttta taagactatt aaaatgcagt
     2761 agacggtatc atccagtaaa actagatatt gatatatggc aatagtgaca aaaattatat
     2821 atatattatc atcagtaaca attactaatt taatatcgaa aactgtgaag aagagtaaat
     2881 aaaaaattga catatattgg taaagtcttg gtcggagaca actatccagc cagagtgatg
     2941 ggaataatta atactagtcc agaatcattt tacaaagaat ccattaaaac tagcaccaaa
     3001 gaaattgttg aaacagctat agagatgcag aatagtggag ctgatataat agatataggc
     3061 tcaatgtcta cagcgcccta ccttcaaact atcatttcta ttgaagaaga aatcaaaaga
     3121 atgaaacagg caataaacat agtaaggaaa agttgcaact taccaatttc aattgataca
     3181 ccaagatcaa gagtggctaa agaggctatc acctttggtg ctaacgctat caacgatatt
     3241 actgggttaa agtatgacaa agagatggca gatattgtat caaaatcaaa tcttccagtc
     3301 atcgtaggtg catataataa gaataaatcg ttaccaaagg ccaacttgga caaaatctct
     3361 ggtacgataa aacttctaaa ggagagcatt acgattgcaa aaagagctgg tattagtgac
     3421 gacaatataa tcatagatcc atctattgga tttttccgag ttgatggtaa aaatccattc
     3481 tttacagaaa tgaaagatgt accttggtat agtcgtgata ttgaagtaat ttcaaagcta
     3541 aataatataa agaaactgtc aaaaccaatt tgtatttcag tttcgagaaa atcatttata
     3601 ggtaagttat taaaactaga tacagaagac cgcttaattc caacactggt atgcgaagta
     3661 atatctacct tgaatggtgc aaacttaatt agaacacaca atgtaaggga gacagtgcag
     3721 gcacttacaa tgttaaagtt acttgcaaag aagcctccga ttatttagct aatagagaac
     3781 tcaaggaaga tactatcaat taagatatgt ctacaattga ctttatgatg atacatagta
     3841 aaaattctgg ttttaaatcg caacagagtg aatgttgtat cataaggaag tgataaaagc
     3901 atatgatcac aaatacaatg atgaataata aaaatttgac aagaatcaat caaacagtac
     3961 aaaaagatat tcttaacttc ataataaata gtcagatatt attgatttaa taattataat
     4021 aagcattagt gaagagttta taatactcaa tacatgaata aacaataaaa agctattttt
     4081 taaataagta aacgcttata atctgacaag acggctagag agtaagggaa tattggatat
     4141 taaagaaggt ctcacgtttg atgatgtatt acttgtccct aaacgctcgc caataatttc
     4201 tagaactcag acggatttga aaacaaaact gtctagaaat attac
//
LOCUS       DATAAS010000331         3473 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4146145, whole genome shotgun sequence.
ACCESSION   DATAAS010000331 DATAAS010000000
VERSION     DATAAS010000331.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3473)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3473)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3473
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4146145"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..283
                     /locus_tag="VHF08_05445"
     CDS             <1..283
                     /locus_tag="VHF08_05445"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068124.1"
                     /translation="LIISFTHEIEIKVMLPGIPPTGKYVELPLVVVMKFDGDNKIAHE
                     HIYWDQASLLAQIGLLDSKSLPVYGIEQTRKLLEISSSLLQQKRNENSS"
     gene            complement(832..1143)
                     /locus_tag="VHF08_05450"
     CDS             complement(832..1143)
                     /locus_tag="VHF08_05450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068125.1"
                     /translation="MISSAGWNILLRTTPVQFTGVSVGMTLVLDFLGMSIGPVIAGVY
                     LQSNTAVFLKDGVAALFPSAEAYNLVFLTAALASIIFIVLSIFLKKVMPLNLTQPASS
                     S"
     gene            complement(1140..2408)
                     /locus_tag="VHF08_05455"
     CDS             complement(1140..2408)
                     /locus_tag="VHF08_05455"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2068126.1"
                     /translation="MFSSKKNGTTTAPNAWINLAILSSVSVMVMYAETMLLPAIPDII
                     KDFNASYNISSWILSGYLITAAIVTPLVGKLSDIYGKKKILIIVLIIFAASIFSGGFT
                     TDLLFLIGTRILQGVGLSVFTTSLSIIRTEFPQQRYGIAQTIISSSHAAGSAMGVGIG
                     GFVIHYFGWHFTFISLIPVVIVFLLIVMLFLRLKDDEKKEEQQQKKQKEEKVKSRPIL
                     DIKGAITLAATVAAFLIAISYLNTDSNTHFNADSSSVNNDNSSSISNTITTSGIITAD
                     TIPIILIPVGAISLILFIKVERKAASPLIDLKLISNKIILSVNIMFIILETSKLMIYL
                     TIPILIRAPSPVGFDGNAIEAGMVQNTFMLVFLAFAPIVGFMIDKFGNIKPLLIGSMA
                     SVIGYFGMLAFHLLESSIIANLAIISIGLH"
     gene            3179..>3473
                     /locus_tag="VHF08_05460"
     CDS             3179..>3473
                     /locus_tag="VHF08_05460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068127.1"
                     /translation="MDTVSIKKANSRVILSALSIVLLTITLSIILSSNNHFLLNSSAE
                     AQTVENNTDSDIIPNNIRLNFSELFTRVESSVLQVTDPSTPGLLGPRLGSGFVY"
BASE COUNT         1166 a          603 c          538 g         1166 t
ORIGIN      
        1 gctcattata agttttacac atgaaataga aattaaagtt atgcttcctg ggataccacc
       61 aacaggtaaa tatgtagagc taccacttgt tgtagtcatg aagtttgatg gtgataataa
      121 gatagcccat gaacatatct attgggatca agcatcactc ttggctcaga taggccttct
      181 tgattcaaaa agcctacctg tatatggtat tgaacaaaca agaaaactat tagaaatatc
      241 atcatcacta ctacaacaga aaagaaacga aaactcatca taaaaacttt agatgtgctt
      301 ctgaactact agaatagata taaaaagttc tcatatgttt aatctggaaa cgcatttacg
      361 ccaccgttca taactccatc taacaagatc gtattctcta tctgtgtttg tgtggcacta
      421 cagccagtat cctgtggtct atgatctttc ccttgcttcg taaattaaat ctcctaatat
      481 agttgtcaaa tattaactaa agaaggagac ctattttttt aaaagttttt gaagattcaa
      541 aaaaactgat ttgttgtagt agtagtttta tttctcccct tcgcttctcc tgttggtctc
      601 ctaattcagt atattatcat actccgattc ctttgactct attatttatc ttcttcttga
      661 tttttataaa acgttagtta ctccttacta ttttgaacaa acttaatggt atctactatt
      721 acaacatcat ttgtcgttag gtctattagt atttgtatca attattggta aatgagataa
      781 tgctgaaatg tttagtatgt atgcaccata tctatgtaac cgaataataa tttagctgct
      841 actagctggc tgtgtcaaat tcaaaggcat tactttcttt aagaatattg aaagtactat
      901 gaaaataatc gatgccagag cagcagtaag aaatacaaga ttgtatgcct ctgctgaagg
      961 gaataaagct gctacaccat cttttagaaa taccgctgta tttgattgca aatatactcc
     1021 agcaatgact ggtcctatcg acatcccaag aaaatctaat acaagagtca ttccaactga
     1081 aactcccgta aattgtacag gggtcgtcct caaaagtatg ttccagccag cactacttat
     1141 caatgtaggc caattgatat tatggcaagg tttgctatta tagatgattc taacaaatga
     1201 aatgctaaca taccaaagta tcctatgact gaagccatgc ttcctattaa caagggctta
     1261 atattgccaa atttatcaat cataaaacca actattggag caaatgctag aaatactagc
     1321 ataaaagtat tctgaaccat tcctgcttct atggcattac catcaaatcc aactggcgat
     1381 ggagctctta tcaatatagg tattgtcaaa taaatcatta attttgaagt ttcaagaata
     1441 ataaacatga tattaacaga caaaataatt ttgtttgaaa tcagtttaag atcaattaat
     1501 ggggatgctg cttttctttc tacttttata aacagtatta gagagatggc tcctactggt
     1561 ataagaatta tgggaatagt atcagctgta attattccac tagtggttat tgtattacta
     1621 atactactac tattatcatt gttaacagaa gaagagtcgg cattaaagtg agtgttagaa
     1681 tctgtattta aatagctaat agcaatcaga aatgcagcta ctgtagctgc caacgttatg
     1741 gctcccttta tatctaaaat aggcctactc tttacttttt cttctttttg ttttttttgc
     1801 tgctgctcct ccttcttttc atcgtctttc aaacgaagaa ataacataac tatcagcaag
     1861 aatacaatta caacgggtat tagtgaaata aatgtaaaat gccatccaaa gtaatgtata
     1921 acaaatccac caattcctac acccattgct gagcctgcag catgggaaga tgatattatg
     1981 gtctgggcta taccatatct ttgttgagga aattctgttc ttataatcga taagctggtt
     2041 gtaaatacgg ataaaccaac accttgtaat attctagtac caataagaaa taataaatca
     2101 gtagtaaatc ctcctgaaaa tatgcttgca gcaaatatta ttagtacaat tatcaatatc
     2161 ttcttcttac cgtaaatatc agatagtttt cctaccagtg gagtgacaat agcagctgta
     2221 atcaaatacc ctgataatat ccaagacgat atattgtaac tagcattgaa atctttaata
     2281 atgtcaggaa tagctggtaa cagcatagtc tcagcataca tgaccattac tgaaacagag
     2341 cttaagatgg caaggtttat ccatgcattg ggagcagtag tagtaccgtt cttctttgaa
     2401 ctaaacaatt aggtggacag acaatatgct agtaatttta accaatatgt tttgtgctag
     2461 aatgtaatac ctttagatct tggattgccg tgacatattc agagagagag aaaaagtact
     2521 caaaagcttc aagttgcaag agaggattca ggtaagacag atactcagta tattgttacg
     2581 ccacctgcaa actaatccaa gttatcttca tcttcttctt tcatttcttt ctggttttta
     2641 ttcttattct taatattgta atttattatc cattatttct ttatgcttca ttgatatctg
     2701 ctcccttaca ttatatgtca atcataagag taaatagaat aataaccaag tctttcttcg
     2761 cggtttaata atagaaattg cagaatgaca gtgacagaga caaagtaaca ataatcccat
     2821 aatacgcatc aggagaggtt taaggcccaa aggaattact gggaattaac taaacgcatt
     2881 tgcttaagga tagtatcaga aaccctgatg ctattctgaa tactttttct ggtctgtgcc
     2941 cttgatccag ttctatattg attgattcat ttgacattat aaagtagagt ataaatatgc
     3001 taatttcaat ttgtaaagta ataaaaaacg tatgctatat atattcaatt aattatgact
     3061 ctttttatat aactattatg ataagaactt tttataataa aaaatgtaga tattctttct
     3121 gatagtagat gatattgaac caataagttt taaatctcat aaagttttcc tttaattgat
     3181 ggatacagta tctataaaaa aagccaacag ccgcgttata ttatcagcat tatcaattgt
     3241 cttattgaca attacattat caattatact atctagcaat aaccactttc tcctaaattc
     3301 ttcagcagaa gctcagacag ttgagaataa tactgatagt gatattatcc ctaacaacat
     3361 acgtctaaac ttctcagaat tatttacaag agttgagagc tccgtattac aagttactga
     3421 cccaagtact cctggtcttc ttggtcctag gctgggctct ggttttgttt atg
//
LOCUS       DATAAS010000332         1964 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4146297, whole genome shotgun sequence.
ACCESSION   DATAAS010000332 DATAAS010000000
VERSION     DATAAS010000332.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1964)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1964)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1964
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4146297"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            84..287
                     /locus_tag="VHF08_05465"
     CDS             84..287
                     /locus_tag="VHF08_05465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068128.1"
                     /translation="MSDILSVWYSLDDIIEGFSQSFSHNITPFADFENKEIFYPTDLL
                     INNLDIIILPNTDFIHGCLAIFT"
     gene            complement(385..1698)
                     /locus_tag="VHF08_05470"
     CDS             complement(385..1698)
                     /locus_tag="VHF08_05470"
                     /inference="COORDINATES: protein motif:HMM:NF016765.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068129.1"
                     /translation="MHIRCDDKRFTKGSAYHAIYSNYSVLKKHLDKAVPTANEIKKQL
                     QENWIQFLNANSAKLSLKTLSGSTPPSVFVGRFGYPKVKVGPMVPPLHGDTTILDMPE
                     IWLGKSIEQIINYRLSLVRGVSDIDIHTTCGKYIESLQELAMSSKSAESEVTFEKKPI
                     AEIKQEKDLGLDTESAPFGPVAPLESFKTSSLLSVDQRLESAYYDKDLRAAEAVVHLY
                     QKGLEISKIHRVLSMGMLGLQKNRRLVPTRWSISATDDIISASLIKDIDFYSRIDFFE
                     VYKYSHLGNYYTIILIPDDVWSFEMQEAWFDKNGNIGIGIDFEDAKGLDHYPSIAGAY
                     FAARLGVAEHLFKIKRKAAALVLREIHPEYVMPVGVWQIREGIREALKGQRNHFDSFE
                     KALSFSCINSSVNKKEWIRNSKIYRNMREQMRITSFFSNNNNNLS"
BASE COUNT          611 a          360 c          306 g          687 t
ORIGIN      
        1 actcattaca ataataaaga atattgatga taatattctt gcattatcta ttcataagca
       61 cgcgtgtctg ccatcacgga aatatgagcg atatcttatc ggtttggtat tcacttgatg
      121 atattataga ggggttctca caatcttttt cacataatat tactcctttt gcagattttg
      181 agaacaagga aatcttctat cctacagatc tgctaataaa caatctcgat attattattt
      241 taccaaatac agattttata catggttgtc tagcaatatt tacttgaata tgtacatgaa
      301 accagtggag atattctatg agctatttaa tgtcatttta tgaactatca cattcaggta
      361 gcttagatgg ctagataaac tgaattacga taaattattg ttattattac tgaagaaaga
      421 cgttattctc atttgttctc tcatatttct gtagatttta ctatttctaa tccattcttt
      481 tttatttact gacgaattta tacatgagaa agataatgct ttttcaaaac tgtcaaaatg
      541 atttctttga ccttttagtg cttctctgat tccctctcta atctgccata ctcctactgg
      601 catgacatat tctggatgaa tttctcttag aaccaatgct gctgcttttc gttttatttt
      661 aaataagtgc tcggctactc ctaatctagc agcaaaatat gctcctgcta tagaaggata
      721 gtgatctaaa cccttagcat cctcaaaatc tatgccaatt cctatattcc cgtttttgtc
      781 aaaccatgct tcttgcatct caaagctcca aacatcatct ggaatcaata tgatagtgta
      841 gtaattacct aagtgagaat atttgtatac ttcaaagaaa tctattcttg aatagaagtc
      901 tatatctttt atcaaactag cagaaataat atcatctgtg gcagagatac tccatctcgt
      961 aggcaccaat cttctgtttt tttgcaatcc taacattccc atactaagaa ctcgatgaat
     1021 cttgctaatt tcaagtcctt tttggtaaag gtgaactaca gcttctgctg cacgcaaatc
     1081 cttatcataa taagcgcttt ctaatctttg atccactgaa agtaaagaag aagttttgaa
     1141 actctctaaa ggcgcaactg gaccgaatgg agcagattca gtatctagac ctaaatcttt
     1201 ttcttgcttt atctctgcaa taggtttttt ttcaaatgtt acttcacttt cggctgattt
     1261 tgaagacata gccaattctt gtaaagattc tatgtacttt ccacatgtgg tatggatatc
     1321 tatgtctgat actcctctta caagagacaa gcgatagtta ataatttgtt caatactttt
     1381 accaagccaa atctctggca tgtctagtat agtagtatcg ccatgtaatg gcggtaccat
     1441 cggtcctacc tttactttag gatacccaaa tcggccaaca aaaactgaag gtggtgtcga
     1501 gccagaaagt gtttttaatg ataatttggc agaatttgca ttaagaaact gaatccaatt
     1561 ttcttgtaac tgcttcttga tttcattagc tgttggcaca gccttatcta ggtgtttttt
     1621 caatacagaa taatttgaat atattgcatg gtaagcgcta cctttagtaa atcttttgtc
     1681 gtcacatcga atgtgcaagt tggatggaat ttgtcttctg gttatgacaa tgcaagaaat
     1741 gatactcagt cctgatggaa attaatcaag ttcttctcaa tctgggattt tagcaaaatg
     1801 taaatccata tataactgac tacaaatcgg cgcaatgaag acacatagag ctaattagta
     1861 aagcaaaata caacactatt gtagcagtag gttgagctaa gattataaca aacacctcta
     1921 ttgattcttt caaagatgat gaaatccgaa acagaatatc ttac
//
LOCUS       DATAAS010000333         3837 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4691824, whole genome shotgun sequence.
ACCESSION   DATAAS010000333 DATAAS010000000
VERSION     DATAAS010000333.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3837
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4691824"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..257)
                     /locus_tag="VHF08_05475"
     CDS             complement(<1..257)
                     /locus_tag="VHF08_05475"
                     /inference="COORDINATES: protein motif:HMM:NF003084.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor eIF-1A"
                     /protein_id="HEX2068130.1"
                     /translation="MGKRKVLTESYLKELVLPRQGELLGRVIKLVGGDNIIVKCTDGK
                     VRTCRIRGKIKRRMWIRDNDLVLVSPWDFQSDRADIIWRYIT"
     gene            complement(568..1029)
                     /locus_tag="VHF08_05480"
     CDS             complement(568..1029)
                     /locus_tag="VHF08_05480"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2068131.1"
                     /translation="MESSRPTTTSGSNTAITQIINPSKNIEMKCCPINYTFKFIGKKF
                     TVLILRNMINGKQTRFNQLLNSIEKSNPKTLSTRLKEMERLGLIKRKVYSNERPIRVE
                     YSLTQKGLALQPILDMMAAYSMKYCSKDIFKDAKPREFKDIYRRDIAEILQ"
     gene            1160..2212
                     /locus_tag="VHF08_05485"
     CDS             1160..2212
                     /locus_tag="VHF08_05485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HEX2068132.1"
                     /translation="MIRYVNTISDLNDDNDSNNSEKRRKYSNSQIQSSSIIPASSNSV
                     CSVCGCNQTITDTESGEIICSKCGQVISDKIEEVLPEWRNFASSDASNDKSRIGMSTS
                     LARHDMGLSTIIGRTDRDASGQKIDAVMRSTMDRLRTWDFRTQTHSPTDRSLRQAFFQ
                     LDVLKDKLGLSDPVVEKTAYIYRKAQERGLVRGRTISGILTAAVYIACRELGTPRTLK
                     DIAADSNVKLHEVAKSYRLLYFELDLKTPVVDPLKCIAKVANKANLSEKTKRQAAEIM
                     NNVTKREISAGKDPMGLAASVLYLSSINTGENITQNNIAYAAGVTEVTLRNRVKDLKK
                     QKVFKNNNNIQNYFTN"
     gene            complement(2580..3401)
                     /locus_tag="VHF08_05490"
     CDS             complement(2580..3401)
                     /locus_tag="VHF08_05490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068133.1"
                     /translation="MDRDRNTAMGLGSNTFAGETITNHIKRVSHSMTSAKSKENDERK
                     SKEFEEELEDNEYEERIDKLSLQFRVASENGLFSQEKVSNVIADEIVQCLLNARHELI
                     DNHFVACERNLIEAERYYHVAIYDASCWWRFINAYAFHLWIYFIGMLFSIVSFYFLLA
                     WELPSEQLGFELLAMQAVIWGMIGGLFQDIWYLWRHVQNRDYRNTWMIQYFSAPFIGG
                     ILGAIVYVTIIAGLIVLDTDTEGKPRDFVVMALAAFAGYNWNWAIKRFKSVGHRF"
     gene            complement(3650..>3837)
                     /locus_tag="VHF08_05495"
     CDS             complement(3650..>3837)
                     /locus_tag="VHF08_05495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068134.1"
                     /translation="KECHSMRLDFLNVPFYTNYIDKGGASGFTKPKPAYIIAEIIWLS
                     TKYDEQALVYNHIYTII"
BASE COUNT         1289 a          650 c          623 g         1275 t
ORIGIN      
        1 gtaatatatc gccatataat atcagctcta tcagattgaa agtcccatgg agaaactaat
       61 actaaatcat tatctcttat ccacattctt cgcttaattt ttcctcttat acgacaagtc
      121 cttacctttc catcagtaca ctttacaata atattatctc ctcctacaag tttgataaca
      181 cgacctaata gctcaccctg ccgaggtaat actagttcct ttaaataaga ttcagttaat
      241 acttttcttt tgcctatttt ttaatattca ccaatctaat atacgcataa tgaacttaaa
      301 aatatatatc tactatacat ttgatagtat tctagcctct tttgagtaga caaaaaatta
      361 ggtgcatcaa aacaggtgtt cattagagta aattaattta tacaagaatt actatagtga
      421 atatttagaa tatatggact agataactaa caggctaaga gataatacca catacaaatc
      481 aacaatgaag gattacattt tttatatata ctcacatcta taccattata gcattttatg
      541 gtaacataac ctatgagagt agatgattta ctgtaggatt tcagcaatgt ctcttctata
      601 aatatctttg aattctcgtg gctttgcgtc tttgaatata tctttactac aatatttcat
      661 agagtatgct gccatcatat ctaaaattgg ttgcaaagca agaccttttt gtgttagaga
      721 atattccact cttataggtc tttcattaga gtaaacctta cgctttatca atccaagtct
      781 ctccatttct ttaagtcttg tagatagagt tttgggatta cttttttcaa ttgagtttag
      841 caactggtta aacctagttt gtttaccatt tatcatattt cttaagatta aaactgtaaa
      901 ttttttgcca atgaatttaa atgtgtaatt aataggacag cacttcattt caatattttt
      961 tgatgggttt attatttgtg tgatagcagt attagaacca gatgtggtag taggtctact
     1021 actttccata gttactatat aaaacacatc ttcttatata gttacctttc tatagttaat
     1081 aacatactta ccaaattgca atctactatc taaaaggcaa ctttcatatt tatatataat
     1141 tactatgata tagttactta tgataagata tgtaaacacg atttccgatc ttaatgatga
     1201 taatgatagt aataattccg aaaagaggag aaagtattct aactcacaaa tacaaagttc
     1261 atctattatt cctgcttctt ctaattccgt atgctctgtc tgcggatgta atcaaacaat
     1321 tacagatact gaatctggcg aaattatatg tagtaaatgt ggccaggtta tttcagataa
     1381 gattgaagaa gtattacctg aatggaggaa ttttgcgtca tcagatgcgt ctaatgataa
     1441 aagcagaata ggcatgtcaa catccttagc tagacatgat atgggactat caacaataat
     1501 cggaagaaca gacagagatg ctagtggaca aaaaatagac gcagtaatgc gctctacaat
     1561 ggatagattg aggacatggg actttagaac acaaactcac agtcctaccg acagaagtct
     1621 tcggcaggct ttctttcaac ttgatgtatt aaaagacaaa cttggactat cagatccagt
     1681 agttgaaaaa acggcttata tctacagaaa ggctcaggaa agaggattgg tacgtggtag
     1741 aacaatttct ggaattttga ctgcagctgt atatattgca tgtagagagt tgggaactcc
     1801 aagaacatta aaagatatag cagcagatag taacgttaaa ctccacgaag ttgctaaaag
     1861 ctatagacta ctgtactttg aacttgatct taaaactcca gtagttgatc cattgaaatg
     1921 cattgcaaaa gtggctaaca aggctaacct gagtgagaaa actaaacgac aagcagcaga
     1981 gattatgaac aatgttacta aaagagagat atcagctgga aaagatccaa tgggacttgc
     2041 agcatctgta ctttatttat catctattaa tactggagag aatataactc agaataatat
     2101 tgcatatgct gctggagtaa cagaagtgac tcttagaaat agagtaaagg atctaaagaa
     2161 acagaaggta tttaagaaca ataataatat tcaaaattac tttactaatt agggcaataa
     2221 ttatatctac tgctcttttt gtgataatgg tgatcaatca aagtagatta gctatgaatg
     2281 acctatatta tacaattcac caaaaggaaa actttctcat cagaaagaat gaaagaattc
     2341 attatattga cgatgattat tagtgacggg attacacagt gattatgaat ttccctacca
     2401 ctagacagat agagttttct ttgaagacat ctaatgttct ccaaatacag ttatttggga
     2461 caaatttgac ataattaaga cctaagtagt atgatagtca agtcaacata ctgcaactac
     2521 tagtgattag attataatat caatatcaat gggaaaaggt attgttgtta tttatttacc
     2581 taaaatctat gtccaacgct tttgaacctc tttatggccc aattccaatt gtatccagca
     2641 aaagctgcaa gcgccatcac tacaaaatca cgaggctttc cttctgtatc ggtatccaaa
     2701 acaataagtc ctgctattat agttacataa acaatggctc caagtattcc gccaataaat
     2761 ggagcactaa agtattgtat catccatgta tttctataat ctctgttttg aacatgtctc
     2821 cacagatacc atatgtcctg aaagagaccg cctatcattc cccagataac tgcttgcata
     2881 gccaaaagtt caaaccctag ctgttctgat ggtagttccc aagcgaggag gaaataaaat
     2941 gagactattg aaaagagcat acctataaaa taaatccaca agtgaaaagc atatgcatta
     3001 ataaatctcc accagcatga tgcatcatat atagcgacat gataatatct ttctgcttca
     3061 attaagttgc gttcacatgc tacaaagtga ttatctatta attcatgtct agcatttaat
     3121 aaacattgga ctatttcatc tgcaattaca tttgacactt tctcctgtga aaacaatcca
     3181 ttctcggatg ctactctgaa ttgtaatgat agtttatcga ttctttcttc atattcgtta
     3241 tcttctagtt cttcctcaaa ttccttactt ttcctttcat cattttcttt tgattttgct
     3301 gaggtcatag aatgagagac tctctttatg tggtttgtga tcgtctcacc agcgaaagta
     3361 tttgagccaa gacccattgc agtgtttcta tctctgtcca tatcctttca ttataaaccc
     3421 tattatgaga ctcatgaatt tctcctttct tctgtattat tctattatgc agtatttctt
     3481 gtagtgatgt taatggtagt gttattgatt gtgctggtga tgacgatggt gatgatggtt
     3541 cattcatata gagttcggta atataccgtt acgtaccata caaaataaga tgtgaagcac
     3601 cacagagaca gcgagggagg gatagagaga gaaagtaatg atgctgaagt taaattatag
     3661 tatatatatg attgtagaca agtgcttgct catcatactt tgtgcttagc cagattattt
     3721 cggctataat atatgctggt tttggcttag taaatccaga tgctcctcct ttatcgatat
     3781 agtttgtata gaatggaaca tttaagaaat ctagtctcat agaatggcat tctttag
//
LOCUS       DATAAS010000334         4198 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1567900, whole genome shotgun sequence.
ACCESSION   DATAAS010000334 DATAAS010000000
VERSION     DATAAS010000334.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4198)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4198)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4198
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1567900"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            396..950
                     /locus_tag="VHF08_05500"
     CDS             396..950
                     /locus_tag="VHF08_05500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068135.1"
                     /translation="MRLSEYGVHYLVVYPNINTLRRIYSYYAKMLLEDNNGIVLIIPY
                     YETTEMVRSVLSGENNNNNQSNIIDVRKYEKQGSLVIIDSVKAYFRSDIDLMSFLARL
                     AKQPQFSGRNGISVIADLASFYYFNRIDKLIEYEMSLPTKYDDKMKLKGFCFYHQEDF
                     DRRFSKEEKQKLVEHHDKALRVVN"
     gene            1303..1578
                     /locus_tag="VHF08_05505"
     CDS             1303..1578
                     /locus_tag="VHF08_05505"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HEX2068136.1"
                     /translation="MTSSAFVLIDCDFPFSENIIEELKNIPEIIEFYRVQSIYDIIAK
                     VNADSEEKLHEIIIRKVREIEGIKNTLTMIIIGAERPRRERDKESKQ"
     gene            2282..2578
                     /locus_tag="VHF08_05510"
     CDS             2282..2578
                     /locus_tag="VHF08_05510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068137.1"
                     /translation="MGAVFRAKDLGRDYKKIVENAVKDLSPDTKDNNNRIIKLPDSWE
                     EIKSEEKLNEIRSQDKAEDLLKNIEAKEKEEEVNLTNDERKKLSNMFKESLTFD"
     gene            complement(2728..2889)
                     /locus_tag="VHF08_05515"
     CDS             complement(2728..2889)
                     /locus_tag="VHF08_05515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068138.1"
                     /translation="MQGVQKLKCTSCGTMFMSETGTTMCPSCSEQNHEHREHETSDMI
                     GGCGCGHSH"
     gene            3417..3584
                     /locus_tag="VHF08_05520"
     CDS             3417..3584
                     /locus_tag="VHF08_05520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068139.1"
                     /translation="MGERGKVTDVSKQATCKVCGLTARTKDELEIHIRQAHGTANSDK
                     SSSEQKIDPFP"
     gene            3775..3918
                     /locus_tag="VHF08_05525"
     CDS             3775..3918
                     /locus_tag="VHF08_05525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068140.1"
                     /translation="MRKLDKASTVLKFTERKNLPINIVQLHVTDDTLVQQAIQFVAKK
                     EGR"
BASE COUNT         1590 a          573 c          682 g         1353 t
ORIGIN      
        1 agttatagta ccacctataa tgaagggaat ttgtcttttc agaactgcct ttagaatctt
       61 atccatcctt tttttatctt ctctatagca aatagatgga ttactttact tatcaatata
      121 tgtattcaaa tatctttaat actcagtttg agaggaacct tctcagatgg gttttataat
      181 cgcagctata tagcaagatg taagagcatt tccattatac atgctaatta aaatcgactt
      241 attagaagct atactattat tgtcgtggtg aagtgaaatc tatattgtac aacaacttcc
      301 tacaatagtt aataccgtta tattcaacat agtatcctag ggattgaata aaaataccag
      361 taataaaggg cacaagtgat gctatcattg aagaaatgag actatctgaa tatggtgtac
      421 attaccttgt tgtatatcct aatattaaca cattaagaag gatttattca tattatgcga
      481 aaatgctact tgaagataat aatggaattg tattaatcat tccatactat gaaactactg
      541 agatggttag aagtgtattg tcaggagaga ataataacaa taatcaaagc aatatcattg
      601 atgtaagaaa atatgaaaaa caaggctctc ttgtgatcat agattctgta aaagcatatt
      661 ttcgttcgga catagattta atgtcatttc ttgcaagatt agcaaagcag cctcaattct
      721 ctggtagaaa cggaatatct gtaatagctg acttggcctc attctattac tttaatcgaa
      781 ttgataaact tatagaatat gaaatgtcac taccaacaaa atatgatgat aaaatgaaat
      841 tgaaaggatt ttgtttttat catcaggaag actttgatcg aagattttca aaagaagaaa
      901 agcaaaagtt agttgaacat catgacaagg cgctaagagt agttaattaa aacattaagt
      961 tgagaaagat gtgaatgaaa tattattatt aacatgtgta aagagctgtt ttactatatg
     1021 ttactcataa tagtgttttg ttcactcaac actctattga acaaactctt cttttttcag
     1081 ataaagagtt ctacaaaatc tcttcatgat tcaatttctt tagataggag atgtcataac
     1141 ttgcaaaaag aatcatatat tatatagaat atctgttatt ctatagcgat catttaacta
     1201 aggtttaaaa ggtataacta tacaatcaaa agagaatatc tttgattaga tatttaaaaa
     1261 atatagccat tttaaatatt acgaataata ctaattatta ctttgacatc atcggcattt
     1321 gtcttgattg attgtgattt tcctttttca gaaaacatca ttgaggaatt gaaaaacata
     1381 ccagagatta tagaattcta tagagttcaa agtatttatg atataattgc aaaagttaac
     1441 gcggattctg aagagaaatt acatgagatt attataagaa aagtaagaga aatagaagga
     1501 attaaaaata ctttaactat gatcattata ggagccgaac gtcctagaag agaaagagac
     1561 aaagagagta agcaataggt attacaatct tttttatcat acatagcgat agcaatttca
     1621 aataataata ctttcatcta atgaacaatc tctaaatgaa agaactgata ttctttacaa
     1681 ctagatcgtg cactaataat aataacaata tgatgtatgt atctggtcta aaacccattg
     1741 aagtgattct atctcagtct gtttattgtt tgtattagct ctatatgaga atatgcattt
     1801 ctgtttattg gtaacatcat attgaattat tttatttatt gttcttttga aacatagaaa
     1861 aaaatactca aacaagatca gctagttgac ataataaaaa gattttctca tataatgtat
     1921 cgaatataga atgagaaagg ataattgaac tgactgtgga tctctttgta tacttaatat
     1981 taaatcatta tttcttccat ctaagatatc atttcattca ttaactctct atagtacaag
     2041 agtcgaaagc ccaaataaaa atatgaatcc tctattcaat tcatgagcgg agacttctac
     2101 caatgtattt tcatttttta ttcagtttgt agcaacagaa ctattttttc attaaaataa
     2161 gaaggtgcat atggctagta tatcctgcat tcactaaatt tctctaactt acagacacaa
     2221 tttattatta ttatatattg acagctcaaa accttattat tgacaaattc cataaaacat
     2281 tatgggagct gtatttagag caaaggactt gggaagagat tacaagaaga tcgtagaaaa
     2341 tgcagtaaaa gatctcagcc cagatactaa agataataat aataggatca ttaaactacc
     2401 ggattcctgg gaagaaataa aatcagaaga aaaattgaat gagattcgga gtcaggataa
     2461 ggctgaagac ttgttgaaga atattgaagc aaaagaaaaa gaagaagaag tcaacttgac
     2521 caatgatgag agaaaaaaat taagtaatat gttcaaggaa tctctaacct ttgattaaac
     2581 tctataatac aaagaagatt gtaattacaa gataataata ctcttagtga cagaattagc
     2641 gatctaagca ttgagatgaa taatatgact tagggatata gggattagat ttgtgacatg
     2701 gagagatgta tataaaccag caaaaaatta atggctgtga ccacagccgc aaccacctat
     2761 catatcacta gtttcatgct cacgatgttc atggttttgt tctgaacatg atggacacat
     2821 tgtagtaccg gtttcagaca tgaacatagt accacaagag gtacatttta atttttgaac
     2881 tccttgcata tctactccaa ctacgataat attgtaatta aaactttagg ataggtaaga
     2941 gtagaaaata gaagaataaa tcttgtgtaa ttttgaggaa ataagacaaa aaagcgaaaa
     3001 tatagaatat aatcaatatg gctttacaga aaaagtaaca tgtaaggatt ttattgtgtt
     3061 atatcatcaa aattgaaaaa cttgagatac aaacaaaccg gtgagcatgt tacgaatatt
     3121 gatgatgaca gtatttgcct aagacatctg gatgtgaaga atgtgaaaaa gaaggtagct
     3181 atttggtagc attgtgtttg cgtttgtctt gtggtcatgt gggctaatct cgatgctatg
     3241 atgtacgtgt agatcaattt tgatcataat gacctaaaac agaattgatc ttagtgagtt
     3301 tgagaattgc tgtcgatcta cataatgact ataaagggta cgaataagga atgatagtat
     3361 cttatataac aaatgtattg aaatcgtaaa taaaatgttg aaaattaatt ctcattatgg
     3421 gagaaagagg taaagtaact gatgtatcaa aacaagctac ttgtaaagta tgtggattga
     3481 cagctcgtac taaagacgaa cttgaaatcc atattcgtca ggcacatggg actgctaatt
     3541 cagacaaatc ctcgtcagaa caaaaaattg atccttttcc ttgaggtatt acttgctatg
     3601 tgttattgac tatctctcct aattcaagag atcacctctt tattgtaaaa atcataaaca
     3661 tattgaactt actataactt cgaagaaaat tccaatagtt actggtagct caattgggat
     3721 agggcttgag acttctttga cttagcagaa aatagcttta ttacatatgc tacaatgcga
     3781 aagcttgaca aggcttcaac tgttttgaag ttcactgaaa gaaagaattt gccaataaat
     3841 atagttcagc tgcatgtaac tgatgatact ttagtacaac aagcaattca atttgtagcc
     3901 aaaaaagaag gacgatagag aacaaaaaat atgagaaatt ttatttgtta tatctatata
     3961 ttttctattg ctatgaatct taagagaaga atgcaaactg aggttcaaat ctgaagcaga
     4021 ccattttaca acaaaaccgc aagaaaaaaa gggtattctg ttataagcat atcaaataaa
     4081 cttttgaaat aatgttatat ccctttatcc atagttattc tatttatgat gcattataca
     4141 acaacataaa acaatcatta caaaatatca gtattgtatt ttagtacggc attcagct
//
LOCUS       DATAAS010000335         2952 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4148201, whole genome shotgun sequence.
ACCESSION   DATAAS010000335 DATAAS010000000
VERSION     DATAAS010000335.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2952)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2952)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2952
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4148201"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..733
                     /locus_tag="VHF08_05530"
     CDS             <1..733
                     /locus_tag="VHF08_05530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068141.1"
                     /translation="LMVALGALIGIYTIKQNNNTLSFLKVCLAIAFAVFLMVAVGMVL
                     MFTLPFSKGQYFDFNPDPLAAMAAASIVIPFLIGLGLFLAARVTSMPFIFTSITAVIM
                     LIQSTTTIISNSYFVDLFPFYLLNIFPAVLADILLQYRKGKGISLLSASNTSVKRYLI
                     ASIIVPLFFTTLFFPWSVDVYGGFFKPSDNIRTEQFFIQLLIPVIIPIVIPLSAVSSM
                     AGIYIGWRFMNASRMNSIYKSDKNI"
     gene            complement(764..1126)
                     /locus_tag="VHF08_05535"
     CDS             complement(764..1126)
                     /locus_tag="VHF08_05535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068142.1"
                     /translation="MSQSEWFTSYLKYKTLEDMLKVILSSSQSVFSYIPMLYHINYNN
                     QEILFIQTGMIGGVIIHYFVQNEKPNKKIIELKRLTGKFSFIDSIGTDAQSIYVPILE
                     LEKSTLRFPAFDSSSSTS"
     gene            1378..2028
                     /locus_tag="VHF08_05540"
     CDS             1378..2028
                     /locus_tag="VHF08_05540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HEX2068143.1"
                     /translation="MDLLGFGTQVVFTSASGVISPGPLFFANLVYGSKQGIYSGIKMA
                     HGHTIVELPLIIILASGLITFSSITTTNLVSKLVSLSGGIAILVFSAFQIEALLKKKK
                     GEKKIYFKTHNKKDPLIIGSILSALNPFFILWWLTVGLKLISDSLELYGFAMGIVVVF
                     SFHIWMDYGWLAVTAHLVSRGTLIFRSKYYPILLLALNAALIYYGIYFIVTGLIVT"
     gene            complement(2060..2365)
                     /gene="albA"
                     /locus_tag="VHF08_05545"
     CDS             complement(2060..2365)
                     /gene="albA"
                     /locus_tag="VHF08_05545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA-binding protein AlbA"
                     /protein_id="HEX2068144.1"
                     /translation="MSSNNANTEIKANNEIFIGKKPLMTYVTATLVQLANEPTVIIKA
                     RGKSITRAVDVAQIIVKRMDTLGYKIGPVKIGSEMVQSQDGKTRNVSTIEVYISRAK"
     gene            complement(2429..2656)
                     /locus_tag="VHF08_05550"
     CDS             complement(2429..2656)
                     /locus_tag="VHF08_05550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068145.1"
                     /translation="MEYPVAVQPDGIKLKPESMVIEQLYHCIFDNKVFLFYKDEQEIL
                     HCYEVEHPSAVKEISSNPSDIKNILMKYSKT"
     gene            complement(2770..>2952)
                     /locus_tag="VHF08_05555"
     CDS             complement(2770..>2952)
                     /locus_tag="VHF08_05555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068146.1"
                     /translation="HKMIQGVQRHVLSLYLDSQNYVVTSELPIRDNVRINSIIDHFNL
                     AGSIIMVVTHLLNILQ"
BASE COUNT          901 a          465 c          487 g         1099 t
ORIGIN      
        1 gctcatggta gctctgggtg cattaattgg tatatataca ataaagcaaa ataataatac
       61 tttatcattc ttaaaggtat gtcttgctat tgcttttgcg gtatttttga tggttgcagt
      121 gggcatggtc ttgatgttta ctcttccatt ttctaaaggt cagtattttg atttcaatcc
      181 tgatccacta gctgcaatgg ctgcagcttc aatagttata ccatttctta ttggtcttgg
      241 tttattttta gctgcaagag tcacttctat gccatttatc tttacatcta taactgcagt
      301 tattatgcta atacagtcaa ctaccacaat tatatccaat tcttattttg tagacctctt
      361 tcccttctat cttttgaata tatttccagc tgtgcttgca gatatcttac tacaatatcg
      421 taaaggtaaa ggaatcagtc tgctttctgc atcaaatact tcagtaaaaa gatatttgat
      481 tgcttcaatt atagttccgt tattctttac tactctattc tttccatggt cagtagatgt
      541 ttatggtggc tttttcaagc cttcagataa tataagaact gaacagtttt ttattcaact
      601 tctaatacca gtaattattc cgattgtaat tccattatct gcagtttcat ctatggcagg
      661 aatatacata ggatggagat ttatgaatgc aagcagaatg aattcaatat acaagagtga
      721 taaaaacata tgaattatat tctctaatgt ataatgttgc ttattaactg gttgaagagg
      781 acgagtcaaa tgcaggaaat ctaagagtgg acttttctaa ctctaaaata ggtacatata
      841 tggattgagc gtcagtaccg atgctgtcaa taaagctaaa tttaccagtt aatcgcttta
      901 actctatgat ttttttattt ggcttttcat tctgcacgaa ataatgaatt atcactcctc
      961 ctatcattcc agtctggatg aaaagtattt cttgattatt gtaattgata tgataaagca
     1021 ttggaatata gctgaaaact gattgagatg aagagagtat aactttgagc atatcttcca
     1081 aggttttgta ctttagatag gacgtaaacc attcgctttg tgacatagta cactaaaatc
     1141 ggagtatata tattagaatt ttgttttatc gcagtacctc agtcctgctt tcttttagca
     1201 ttctgataca attcatcttt atgcatcata aatcatatct aaatttcatt taatgataat
     1261 tgctagttat ctcacaaaaa aaagcatatt taatttggtc ttatgtgaaa tatataatat
     1321 ataatgacta tatgctatca taaaattttt gtgatagttg gaaaatagag caatgatatg
     1381 gatcttttag gtttcggcac acaagttgta tttacatcag catcaggagt catctctcct
     1441 ggaccgttat tttttgcaaa tcttgtatat ggaagcaaac aggggattta ttcaggtatc
     1501 aaaatggcac atggtcatac aattgttgaa ttgccgttga tcattatatt agcttcaggt
     1561 ttgattacat tttcatcaat tactactact aatttggtct ctaaactagt tagtttatct
     1621 ggaggaattg caatattagt tttttctgct tttcaaattg aggccttgtt aaaaaagaaa
     1681 aaaggagaga aaaagatcta ttttaagacg cacaataaaa aagatccttt gattatcgga
     1741 agcattctta gtgctttaaa tccttttttc atattatggt ggctcacagt cggtctgaaa
     1801 ttaatctctg actcattaga attgtatggc tttgcaatgg ggattgtagt cgttttctct
     1861 tttcatatct ggatggatta tggttggcta gcggtaacag cacatttagt ctcaagaggc
     1921 actttgatat ttagatcaaa atattaccct atcttacttt tggcattaaa tgctgctctc
     1981 atttattacg ggatatattt tatagtaact ggattgattg tgacttgatt attaggacga
     2041 tatatatatg agataagagt cacttagccc ttgaaatata gacttctata gtagaaacat
     2101 tgcgcgtttt tccatcctga gattgtacca tttcagaacc tatttttact ggacctatct
     2161 tgtaacctaa agtatccatt ctttttacta taatctgtgc aacatccacc gctctagtta
     2221 tgctttttcc tctagccttt ataatcacag ttggctcatt agcaagctgt acaagagttg
     2281 ctgtaacata ggtcattaat ggtttttttc caataaaaat ttcattattt gctttgattt
     2341 cagtatttgc gttgtttgac gacattgtgt aaaaatgatg tcttatagta taatataacg
     2401 tttattgatt gttctctaag ttgatgattt aggtctttga atacttcatc aatatatttt
     2461 tgatatctga tggattggag gagatttcct taacagcaga tgggtgctca acctcataac
     2521 aatgaagtat ttcctgctca tctttataga ataggaaaac cttattgtca aagatacaat
     2581 gatacaactg ttctataacc atactttccg gctttaattt gattccatca ggttgaaccg
     2641 ctacaggata ttccaattca ctattagatt ctttgggttt agagagaaaa aaatctatcg
     2701 gaaatagaca atgcggtatt gaattttaat aattcatcta ttgatcaaat ctaaataact
     2761 atcaggatat cattgtaata tatttaataa gtgagtgact accataataa tcgaccctgc
     2821 aaggttgaaa tgatcaataa tagagttgat tcttacgttg tctctaatag gcaattccga
     2881 tgtaacaaca taattttggc tatctagata caatgaaaga acatgccttt ggacaccttg
     2941 gatcatcttg tg
//
LOCUS       DATAAS010000336         4865 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4148943, whole genome shotgun sequence.
ACCESSION   DATAAS010000336 DATAAS010000000
VERSION     DATAAS010000336.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4865)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4865)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4865
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4148943"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..335)
                     /locus_tag="VHF08_05560"
     CDS             complement(<1..335)
                     /locus_tag="VHF08_05560"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068147.1"
                     /translation="MNIDYEFLYAFSKDILNLDRTIRWMGIANNFGVLLNVEHREGLI
                     PVLTEEENEEYASSTITRHKTRIKFESKIGKLIYALAKYQKLNRVTIPINENYFLLIA
                     LDAEVKDFD"
     gene            998..2626
                     /locus_tag="VHF08_05565"
     CDS             998..2626
                     /locus_tag="VHF08_05565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068148.1"
                     /translation="MTKGEGNNININDSNNYTLEKKGGRYLFGDYTPFDENKNFINML
                     KDFVSVSSNIIQIHKNVERLRFVLNNAELLENEMITKIKQLKNSTDTSMDAFHKNYHE
                     DIINALFPTPTGNDLFFQIKNTLIHRLTDSEKEYARQSEEYKKYIHSKIEDFYKNAAM
                     LLQDWLSKDNFNLPFALTSNLLNVVEVSIDRNDDNSYRISRMSNIIIQMEKAVKFADT
                     AIDNRASSLFYSFLVDNSSIEFWSHKRKVSDLGIKDMLIPVGFKTPISEKLKRPFRFM
                     SRGDDDQAPVEKDPEFVSADDYYLSYLKLEDGKTLSLILADDTSKLDDNVMKINYDLA
                     DWYQNNLDDKVDVSQNAEFYKRLISEEKVPKIDYIQDKEIRRLNLFQKEFMQFTDISK
                     ILLLGKVLTDKMNGVLNPKAIASHIKLESIKVDDKDAIKVNRDSAKSPSLLYNEELVI
                     SFLESVATGFAPLILKLKTKSPVKGELILRYETDQRQREEYLVRTEEINSQLSSTNEG
                     KRISSILGLSNNVSSDMTTSSHSTTSSTTTSTRS"
     gene            complement(3024..4028)
                     /locus_tag="VHF08_05570"
     CDS             complement(3024..4028)
                     /locus_tag="VHF08_05570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068149.1"
                     /translation="MIEERQYLYLSNYMYGGCATFTAHLLHTIGKKYVLYLIKRGYKG
                     KIRKGDFGYGIHYQNLSIEALDTIKNPFITDMYKHFHLLEKLKRNDITIVIHDPIEIF
                     KENEPFLKYWNIICIRKTFQQYLKNRYNLNPKFLYHPFYPYPTQKNDGNDNYDNNILT
                     KTNAVSISRIDHSKHIDIILDANKLIRLKHNNNNSIKIYGWIDSKYVHDVLGMEHFKQ
                     YYHGKFKKSFSAISKILSNAKFMVDLSIIQHDGGGTQYTFLEAIHNNVALIIHRKWIE
                     DVDPKYRDFKEGYNCYAVSNGQELAEIINKSKNIDTTQIVYNAKKLMDRHIKADWSSV
                     "
     gene            complement(4323..>4865)
                     /locus_tag="VHF08_05575"
     CDS             complement(4323..>4865)
                     /locus_tag="VHF08_05575"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2068150.1"
                     /translation="ENLHLSVISVGFIFTSASIANLLSSFFSGKLTDRYGMKWPLIIS
                     ILVASFIIIIIPFTDSMIQILILVIILGITSGFFGQSVAWAAEKVEEKVKRSINHTRN
                     SNHLHTSSFVTKGIGFNRMIGDAGLILGPLIVGYIIVIMKNQNFVWVVSFVTVSVVLM
                     FICSLLTKANNSRNMIFTKV"
BASE COUNT         1738 a          705 c          749 g         1673 t
ORIGIN      
        1 ctatcgaaat cttttacttc tgcatccagt gctataagca gaaaataatt ttcatttatt
       61 ggaattgtaa ctctgttgag tttttgatat ttagctaatg cataaatcag cttacctatt
      121 tttgattcaa actttattct ggttttatgt ctggttatgg tacttgatgc atattcttca
      181 ttttcttctt cagtcaaaac aggtattaat ccttccctat gttctacatt aagaagaaca
      241 ccaaaattgt tcgctatgcc catccatcta atagttctgt ccaaattcaa aatatcttta
      301 ctgaatgcat atagaaactc ataatctatg ttcatgtatt actaatcata gtatatatct
      361 gtgtgtttaa gaagttattc taaggctaaa attttaatat gtctaagttt cctgttattg
      421 aaagcaaatt gttcactatg gctatggagt gctgggatga atattcaaac aatgatgcac
      481 tctatgtagg ttgctagcag aactatatga tagatcgtag taaaataaga acagtggata
      541 aataaaatta aaaagcctat ggttgcctac gaagttaacg gtaggctaat aatcttttca
      601 tagtatttta attaatattg atgatgataa tagtaataga tgtcatagat cgagattcaa
      661 aagtacaact gtggttaact cagacattaa gaggtatatt tatttaaata aattgttaat
      721 ttcaaatgca tagtgtacat gtgatttttt aacagatatt agaagcaact gctttatgta
      781 tttttagaat taggaaaaga aggagtgata gaggactgct gtatagagaa tatatctaga
      841 gcaatacctt aacgatggtg agaattaagt ataatgtagg agcagaacaa aagaaattta
      901 cctacattga tatacaaagt taaatgtaga acatcttgta ttaacagact gtataaatca
      961 tatactttaa atcatataat ctgatcaata atctataatg actaaaggag aaggtaataa
     1021 tatcaatatt aatgatagca ataattatac tttagaaaaa aaaggaggaa gatacctttt
     1081 tggtgattat acaccatttg acgagaataa gaattttatt aatatgctaa aggattttgt
     1141 ttctgtttca agtaatatta ttcagataca taaaaatgtt gaaagattac gctttgtatt
     1201 gaataatgct gaattattag aaaatgaaat gattacaaaa attaagcaat tgaaaaattc
     1261 tactgacaca tctatggatg cctttcacaa gaattatcat gaagatataa taaatgcatt
     1321 atttcctaca ccaacgggta acgacctatt ttttcaaata aaaaatacat tgattcatcg
     1381 gctaactgat agtgagaaag aatatgctag acagtcagaa gaatacaaga agtacattca
     1441 ttcaaaaata gaggatttct ataagaatgc agctatgctt ttacaagact ggctgtcaaa
     1501 agataatttc aatctaccgt tcgcattaac atcaaattta ttgaatgtag tagaagtatc
     1561 tattgatcgg aatgatgata actcttatag gatttcccga atgagtaata taataataca
     1621 gatggaaaaa gcagtaaaat ttgccgacac tgctattgat aatcgagcct cttctctttt
     1681 ctattccttt ctagttgata attcctcaat agaattttgg agccataaaa gaaaagtttc
     1741 agatcttggt ataaaagaca tgctaatacc tgttgggttt aaaactccaa tatctgaaaa
     1801 gttgaagagg ccatttcgtt ttatgtctcg tggcgatgat gatcaagctc ctgtggaaaa
     1861 agatccagaa ttcgtttctg ctgatgatta ttatctatct tacttgaaat tagaagatgg
     1921 caagacactt tctttaatac ttgctgacga tacttcaaaa ctagatgata atgtaatgaa
     1981 gatcaattat gacttggctg attggtatca gaacaatctt gatgataaag ttgatgtttc
     2041 acaaaatgct gaattttata agagattgat ctctgaagaa aaagtgccca agattgatta
     2101 tattcaggat aaggaaatcc gcaggttaaa tctattccaa aaagaattta tgcaatttac
     2161 tgacatatct aaaattctgc tccttggtaa agtactaaca gataaaatga atggcgtatt
     2221 aaatccaaaa gctattgctt cccatataaa actcgaatca atcaaggtag atgataaaga
     2281 tgcaataaag gttaatagag attctgcaaa atcaccatca ttactttata atgaagaatt
     2341 ggtaatatca tttttagaat cagtagccac agggtttgct cctttaatat taaaattgaa
     2401 gactaagagt ccggttaaag gagaattaat tcttcgatat gaaacagatc aaaggcagag
     2461 agaagaatac ctagtaagaa ctgaggaaat aaattcgcag ttatcgtcta ctaatgaggg
     2521 taaaaggata tcgagtatac tcggactttc taacaatgtt tcgtcagata tgacaacatc
     2581 atcacattct actacgtcgt caactacaac ttctacaaga agctgatctc aaaaccaaaa
     2641 actgataaaa ctaacccaat caatggattt agttcctcca aaggtgagat ttcaaatgct
     2701 gcctaaggat agcaaagcgc agttccagct atgtattatt tttaatgtac cccagcgcgt
     2761 aactgtatgc ctgtttgttt atgaatggtt caatatatat aacatgctat tgtatattat
     2821 gttcaaactc atacaatata taatataatg gatagtacta ctgctacaac agcttaagaa
     2881 aggaaataac catcattatt atttgagcga aagaaggaag gtattatatg attagggaaa
     2941 gtacttcaaa tagatgcaat cgaaaggatc tataggtaat agttcttatc gtggctattc
     3001 tttttgatac taatatacta ctcctatact gaggaccagt ctgctttgat atgtctatcc
     3061 attaatttct ttgcgttata tactatttgt gtagtatcta tatttttgct cttgttaatt
     3121 atttctgcta actcttgtcc attagaaact gcatagcaat tatagccttc tttaaagtct
     3181 ctatattttg gatcaacatc ttcaatccat tttctgtgta ttatcaatgc aacattatta
     3241 tgtattgctt caagaaatgt atattgagtc ccaccaccat cgtgttgaat tatagataaa
     3301 tcaaccataa atttagcatt gcttaatatt ttagaaattg ctgaaaaaga ttttttaaat
     3361 ttaccatgat aatattgttt gaagtgttcc attcctaaaa catcgtgtac atattttgaa
     3421 tcgatccatc catagatctt tatcgaatta ttattgttgt gttttaatct tatcaatttg
     3481 ttagcatcca atattatatc tatgtgctta gaatgatcta ttctagatat tgaaactgca
     3541 tttgtttttg ttagaatatt attatcataa ttatcattac catcattttt ttgcgtagga
     3601 taaggataga aaggatgata aagaaatttt ggattaaggt tatatctatt tttaagatat
     3661 tgttgaaaag tttttcttat acaaataata ttccagtatt tcaaaaaggg ttcattttct
     3721 ttgaaaattt ctattgggtc atgaataaca attgttatgt catttcgctt taatttttca
     3781 agtaagtgaa agtgtttata catatctgta atgaatggat tcttgatagt atcaagtgct
     3841 tctattgaaa gattttgata gtgtatgcca taaccaaaat ctccttttct aatctttcct
     3901 ttatatcctc tctttattaa atataataca tatttttttc ctattgtatg aagaagatga
     3961 gcagtaaaag tagcacatcc tccatacata taattagata aatacagata ttgtctttct
     4021 tctatcatac tattattctt tggataatat aacaagaata acactgtaat agatataagc
     4081 atttaagttc taatagaata attaataata atctgaatta ataccaaata ctcttgacat
     4141 aatcacaaaa atatatatgg gtaggttagc agaagcatcg atattctaat tatgtgtata
     4201 tttctttatt atcttgaagt taaattgcct gagaaattta ttcataagca atggaatacg
     4261 taaatcaaag tcaaagcaat cgtgtgagca aacataacag aatgtcttca atgagtactt
     4321 ttttatactt ttgtaaatat catattcctg ctattattag ccttagtgag taatgaacaa
     4381 ataaacatga gaacaacact tactgtaaca aatgatacca cccatacaaa attctgattc
     4441 ttcataatca ctatgatata gccaacaatt aaaggaccca agattagacc agcatcacct
     4501 atcattctat tgaatcctat tccttttgta acaaatgaac ttgtatgtag atggttacta
     4561 ttcctggtat ggttgataga tcttttaacc ttttcttcga ccttttcggc agcccaagca
     4621 acgctttggc caaaaaatcc tgaagtaatg ccaagtataa tgacgagaat cagaatctga
     4681 atcattgaat ctgtaaaggg aattatgatg attataaaag aagcaacaag aatactaatt
     4741 atgagtggcc acttcattcc atacctatca gtcaattttc ccgaaaagaa agaggaaagt
     4801 aaatttgcta ttgatgctga tgtaaaaata aacccaacac tgattaccga aaggtgtaaa
     4861 ttttc
//
LOCUS       DATAAS010000337         4341 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3063145, whole genome shotgun sequence.
ACCESSION   DATAAS010000337 DATAAS010000000
VERSION     DATAAS010000337.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4341)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4341)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4341
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3063145"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            438..737
                     /locus_tag="VHF08_05580"
     CDS             438..737
                     /locus_tag="VHF08_05580"
                     /inference="COORDINATES: protein motif:HMM:NF017917.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaB family protein"
                     /protein_id="HEX2068151.1"
                     /translation="MPNTRSKTKGIKRGSGGGSSRGGKQLSSRTKKQIDSLPEHAQHI
                     YKKTHSNALEQYQSAEKRRGGKKQSAEEVAHKAAWAAVKKEYKKKGNEWVKKEEE"
     gene            complement(997..1542)
                     /locus_tag="VHF08_05585"
     CDS             complement(997..1542)
                     /locus_tag="VHF08_05585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068152.1"
                     /translation="MISKQFNNIRLSIKKNGNKKNKISIVNCYLKWEDHAREKSYLEK
                     MHNEIIKMPVEKTWESLHKFGYLGYLREEVYDGRSYVMKHLFSEAWSEDNNDSIKDGY
                     CKISSDVLKARLPEAIRITIQREKLKYNKKTRLSRQRQQQQQKKEEDNHSPRVKSLKD
                     FVQLFEQKEKEGKNPRIYVSY"
     gene            complement(2195..2323)
                     /locus_tag="VHF08_05590"
     CDS             complement(2195..2323)
                     /locus_tag="VHF08_05590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068153.1"
                     /translation="MDIINSKKRKGEDFVITLPELVPFTSVNTTTSDGRKISDSKK"
     gene            complement(2729..3787)
                     /locus_tag="VHF08_05595"
     CDS             complement(2729..3787)
                     /locus_tag="VHF08_05595"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEX2068154.1"
                     /translation="MTQVCGFAAQHAKAPLTPYSFKRREPRDNDVVIDIQYSGICHSD
                     IHQVNNGWGGSIFPMVPGHEIIGIVSHVGTNVTRYKVGDRAAVGNFVDSCRKCSSCHK
                     GLEQYCLEGATWTYNAIERDGKTQTQGGYSNKIVVDENYVFQIPDNLPLDRAAPLLCA
                     GITMYSPLMHWKAGPGKKVAIIGLGGLGHIGVKIAHALGAEVSVLSHSLEKEEEAKKM
                     GADKFYTTSDTNTFKKHRGYFDLVINTVSVVLDSNKLLKMLALDGTMVLVGLPENEMT
                     IGAFSLASARRSLAGSAIGGIRETQEMLDFCSKHNIACDIELIPIQKVNEAYERVVKS
                     DVRYRFVIDIANSLKCKD"
BASE COUNT         1332 a          836 c          695 g         1478 t
ORIGIN      
        1 cctcctaacc tcatcttcag tcttcttttg tgaagagcat catagagata gatagataga
       61 tagatagaga gaacaattca atacaaaaga caaaatagaa tattttgatg attactttgc
      121 atgtagagag aaaggtgtaa actaagtcat gttaacagtt gatcaatgtg tttgttgact
      181 catataataa taatatgact ccttaactta gcagagcctc tctaattctg gctaataaac
      241 tgcacgttag aattatataa tcttgactca gattatgaaa aaaaccatac tgtcatactg
      301 caatgctcaa tctcactctc tcagcaaata tgcaattata ttgcaatcaa ttttttggcc
      361 tatcctatct attcactatc tgagaatact taagaataat gcttttatca tatcagtctc
      421 tacagtttta gcagaagatg cctaatactc ggtccaaaac aaagggaata aaaagaggat
      481 caggtggagg aagtagtcga ggtggtaaac aactatcttc taggacaaaa aagcaaatag
      541 attctctgcc agagcatgca cagcacatat acaaaaaaac tcattctaat gctctagaac
      601 aatatcaaag cgctgaaaaa agacgtggtg gtaaaaagca aagtgccgaa gaagtagcac
      661 acaaagcggc atgggcggct gtcaaaaaag aatacaagaa aaagggaaat gaatgggtaa
      721 agaaagaaga ggagtaaaca acccctatct taatatctta tatgaggaaa agaagcagtg
      781 cacaagtcaa aatcaggttg ccatgtaact tatcgaggtt actattcttt ctccaaagtt
      841 cttgtatgga attcaatcct aatttacatt atgagtttgt ttacagtagg atcaatcaac
      901 aagtactctt ttaataacaa gtccttaagg agtgatatca ttttcttcca tccctaatac
      961 taggaaagat tcttcttatt tacttctcta ttgtcactaa taagacacat aaattctcgg
     1021 attcttaccc tctttctctt tttgttcgaa caattgcacg aaatctttca acgattttac
     1081 tcttgggcta tggttatctt cttctttctt ttgttgttgc tgctgtcgtt gccgtgatag
     1141 tctagttttt ttattatact taagtttctc tctttgtatt gtaattctaa tagcctctgg
     1201 cagtctggct ttaagtacat cagaacttat tttgcaatat ccatctttta tgctgtcgtt
     1261 gttatcttct gaccatgctt cagagaataa atgcttcatt acataagatc gaccatcgta
     1321 tacttcctct cttaaatatc ctagatatcc gaatttatgt aaactctccc aggtcttttc
     1381 aactggcatc ttaattattt cattgtgcat tttctctaag taacttttct ccctggcatg
     1441 atcttcccat ttgagataac agttaacaat actaatttta tttttcttat taccattttt
     1501 cttaatagat aaacgtatgt tgttaaattg tttcgatatc attttattct ctacctatac
     1561 aaaatgattt tctatatcta ttctcccaat actgattgat aatgttacca tgattactat
     1621 tgtttgcaag aaaactgaag caaaattaag agcagacaat ttttcagaca ttctttccta
     1681 tattatttaa atggatcttt gattgtcatt tttgagaatg aaaatcagtc agtatacaga
     1741 ctaattaaac tacgcttgca tatttgttta gaagagaatg caattttacc tgacattggt
     1801 atttaggttc caaagcactt tattttgcaa aagttgtatt gtctgttgct tctcactgcc
     1861 tcctattttg gcctgtcggt aaggagcagt taagcagaaa gtaatgaaat agccaagtaa
     1921 tttcagatgc gatataataa taatagtaaa accgatacac aaattgttta tcaagttaat
     1981 tttacatata gtaaatattt tgcttgctaa tctttgatat catgttttct tctattatcc
     2041 catttcaaac acttgtcaat cttcataaaa gattgctggt aactattaat agatctgtcc
     2101 aaatgcataa ttacttgcaa atgtgggatt aaggaaattg ttgttcggtc actatttctt
     2161 ttttgtcagt agtttatgct gttgactttg cttctcattt tttactatcg ctaatcttac
     2221 ggccatcaga agtagtagta ttcacagaag taaagggcac tagttctgga agagtgataa
     2281 caaaatcttc tccttttctc ttcttgctat tgatgatatc cacatttttg tcatctggct
     2341 tcttcctctg ctttaagata gtgtgtatat agcatggagt gacatttttt ctatttacgc
     2401 aatttcagcg tagatcttat gctggttaaa atacagatgt ataatctact tttttcattt
     2461 gtcatttaat taaatttata acttatagta tggataatcg atacttaaaa gggaatgttt
     2521 ctgatgccgc ttgctttcat ctatgatact aaattatttc cttattacca tttactttct
     2581 tcatagattt cttctcactg aatattgttc tcttgattgc tgccacgttt taatatacat
     2641 ttaaacatgc catgaacatt attgttattg ctttctctta taaacagcat tttaaggtta
     2701 tgagagaggt ttacttactg ctaagcaatt aatctttaca cttgagtgag tttgcaatat
     2761 ctataacaaa tctatatcga acgtcgcttt tcacaactct ctcataagcc tcatttacct
     2821 tctgaatcgg gataagttct atatcgcagg caatgttatg cttgctgcag aaatcaagca
     2881 tctcttgggt ttctcggatc cctccgatcg ccgatcctgc aagactgcga cgagcactag
     2941 ccaatgagaa ggcaccaatt gtcatttcat tctctggaag cccaaccaat accatcgtcc
     3001 cgtcgagggc aagcatcttc aagagcttgt tggaatcaag gacaactgaa accgtattga
     3061 tcacgaggtc aaaataccct ctgtgcttct tgaaagtgtt cgtatctgat gtagtataga
     3121 atttatcggc tcccattttc ttggcttctt cttctttttc aagagaatgg ctgagcacac
     3181 tcacttcggc acctagtgcg tgtgcgattt ttactcctat atggcccagg ccaccaagac
     3241 ctataatggc aactttcttt ccaggaccag ctttccaatg catcagaggt gaatacattg
     3301 tgatacccgc acagagaagc ggtgctgcac gatctagggg aaggttgtca ggaatctgaa
     3361 aaacatagtt ttcatcgact acgattttat tagaatagcc tccttgggtt tgagtttttc
     3421 catctctttc aattgcatta taagtccacg tcgctccctc cagacaatac tgctcaagtc
     3481 ctttatggca agagctacac ttcctgcaag aatcaacgaa gttgccaaca gctgccctgt
     3541 cacctacttt gtagcgagtc acatttgttc caacatgtga gacaatgcct attatctcgt
     3601 gtcctggaac cattggaaag attgatccac cccatccgtt attcacttgg tgaatgtccg
     3661 aatggcaaat accactgtat tgaatgtcga taacaacatc attatctcga ggttcccgtc
     3721 ttttaaaaga gtatggagtg agaggtgctt tggcatgttg agctgcaaat ccacaaactt
     3781 gagtcatcaa ttttctttta tactactcct ttgttgtcca gttatgcaat catcccagtt
     3841 aagaatgtaa tcagactact agatacgtca gctaagaaat caaaaagtta agaccaatgt
     3901 aatggcatta ataaaggaat gaagaagtta ccagcaatta gtaaatcaag aattcctctt
     3961 ctaaacactc caggctttga tatatatttt agcagcagaa aatgattggt aaattaattc
     4021 ataaactgtc aaatataaag taaacaaaaa caatttaaaa caattaggta tttacagatt
     4081 tattttctgg gttttacaat tgcatcaaag acatatatta tagacaagat gttctttact
     4141 atttttagga aaaataagaa aaagatttct tctttgttta ttctaatctt taattcatta
     4201 atgtcctcta ttatcctacc atttcgggag gacccatcaa ctcaaaatat tcacgatccc
     4261 ccatcattcc aggacccatc attccaggac ccatcattcc aggacccatc attccaggac
     4321 ccatcattcc aggacccatc a
//
LOCUS       DATAAS010000338         1650 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4694550, whole genome shotgun sequence.
ACCESSION   DATAAS010000338 DATAAS010000000
VERSION     DATAAS010000338.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4694550"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            71..1087
                     /locus_tag="VHF08_05600"
     CDS             71..1087
                     /locus_tag="VHF08_05600"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HEX2068155.1"
                     /translation="MINNNIGVNFQGFESSAYQNRKTPTPPRDYIEDSFQIFSKNNIF
                     MLRVPYSWESWECDKSNFYEDLEKISKVADAYNILCIYDNHQWEGSSWLGWGIGMPNS
                     LLSANYQKNTGRRPNRNVIKDFWNKWWNHKIINRENVDGWEAQISFVKEVISYLNNKK
                     STFGFEILNEPQVYHILDYNKVGHYHNYAMQELRKCTDKLLFFNAAISHIPFDNPILQ
                     ARVAPTTRVNTVYDVHMYPPSSYNMRFFRLVCSLLQNVQIYIGEFNSGYKYGANLSKN
                     KLMKYLKTFHKFKLFGWALWRWYYTQDSNIPAFNLTKICNGKISQNINFCNLIEAVRG
                     ICLQ"
BASE COUNT          587 a          243 c          277 g          543 t
ORIGIN      
        1 ctaataaact ataatgattt aattttaaat gattaatatt atcatcacca tatattattt
       61 tcttcaaaaa atgatcaaca ataacatagg tgtaaacttt cagggatttg agtcttctgc
      121 ttatcaaaat agaaaaacgc ctactccccc gcgggattat atagaggact cattccaaat
      181 attctctaaa aataatattt ttatgctgag agttccttat tcatgggaat cttgggaatg
      241 tgataagagc aatttttacg aggatctcga aaagataagt aaagtagctg acgcatacaa
      301 cattttgtgc atatatgata atcatcaatg ggaaggttct tcatggctag gatggggcat
      361 tggaatgccc aatagcttgt tatctgcgaa ttatcagaaa aatactggaa ggcgaccaaa
      421 caggaatgta ataaaagatt tttggaacaa atggtggaac cataaaatta taaataggga
      481 gaatgtcgat ggatgggaag ctcaaattag ttttgtaaag gaagttatct cttatttaaa
      541 taacaaaaaa tctacgtttg gtttcgagat attaaatgaa ccacaggtat accatattct
      601 tgattataat aaggttggac attatcataa ttatgctatg caggagctaa gaaaatgcac
      661 tgataaactt ttatttttca atgctgctat ttcacacatc cctttcgata atcctatatt
      721 acaagcacga gtggctccaa ctactagagt taatactgtt tatgacgttc atatgtatcc
      781 tccatcgtca tacaacatgc gatttttcag acttgtatgt tctcttttac aaaatgttca
      841 gatatatatt ggagagttca attctggcta caaatatgga gcaaaccttt ctaaaaataa
      901 attaatgaaa tacttaaaaa cgtttcataa atttaaatta tttggatggg cattatggag
      961 atggtattat actcaagata gtaacattcc cgcttttaat ttaacaaaga tatgcaacgg
     1021 aaagattagt cagaacatta atttttgtaa tctaattgag gcagtgagag gaatatgttt
     1081 gcagtaaaaa ttcgaaaaat tagacataga tcaaaaatag aaacatttga aggatgtttt
     1141 gataaagaca ttttcttcac aagataattt atgatttcat tttgttaatg aagaacgaag
     1201 gacaaaagtt gtaaatgatg atcccaataa gctatcactc tgtgctactt atcaacaaag
     1261 aaaatcatta aagctggatg attctattcg attgtaggta ggaatctact tttaggacct
     1321 atatcgtcac tgactacatt gaatctacta attatactat tactatcttg atctaatctt
     1381 gtctttatcc ctgaaagttt gggtggtaaa agagagagtc aattctgtcc cgtattccac
     1441 tgaggcagct ccactattgt ttcgttttat aggactacaa tattgtaata tctaaatgtc
     1501 tattgaggca gttactagtt ccatcaggat tatctcttat gtaaaattca aaatggcatt
     1561 aaaatcaaaa gaagttcaaa gacaatatcc caatctatta gaaagattct ttgatttcta
     1621 taagttcgaa gacatcgatg tagtggaaca
//
LOCUS       DATAAS010000339         2483 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_370598, whole genome shotgun sequence.
ACCESSION   DATAAS010000339 DATAAS010000000
VERSION     DATAAS010000339.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2483)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2483)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2483
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_370598"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..305)
                     /locus_tag="VHF08_05605"
     CDS             complement(<1..305)
                     /locus_tag="VHF08_05605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-methylthioadenine synthetase"
                     /protein_id="HEX2068156.1"
                     /translation="MISGLLKADGYEIATDEKESALNIIVTCSVKDVTQHRMLYRIEK
                     LSKSIKPLIVAGCLPKTERQLIESLNPFASLLGPHSIDKTLDVVHSALFGKKSIRLE"
     gene            complement(807..2144)
                     /locus_tag="VHF08_05610"
     CDS             complement(807..2144)
                     /locus_tag="VHF08_05610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate aminotransferase family protein"
                     /protein_id="HEX2068157.1"
                     /translation="MEYNNYKEIYERKTKKSRSLYFRSTNVFPGGINHNIRFFEPYPF
                     FTKAARGKYLLDVDDNEYTDYWMGHWALILGHTPDIVCNSLLKQINKGILYGTTNEIS
                     VDLGETIQKVMPRAEYIRFSNTGSEATMYAVRLARAKTGRRVIAKVLGGWHGYNTSLM
                     HNVNYPFEIQEGCGLIRDEEQYIKSIPFNDLQKSLSVLESIKEDLACIIIEPVLGGAG
                     CITPIDGYLHGLQEFAKRNDSLFILDEIVTGLRLSIHGAASVYKLEPDLFTLGKIIGG
                     GLPIGVVCGDKDIMSLADPVLRKDKENCCAIGGGTFSANPITMTAGLATINYLKKNKN
                     SIYPKINSLGEETREDLGKIFSDSKINVEVTGTGSLFQIHFLNEQVTSIKSAADVALS
                     NRELLKKYNLALMANHGIFFLPLKMGAFSEAHDHNDVKKLLSATTSLLDLGFF"
BASE COUNT          744 a          474 c          411 g          854 t
ORIGIN      
        1 ttttcaagac gtatggattt tttaccgaaa agagcagaat gcactacgtc aagagtcttg
       61 tcaatggaat gaggaccaag taaacttgca aatggattaa gtgattctat taattgtctt
      121 tctgtctttg gtaagcatcc cgctacgatt agtggtttta ttgacttgga aagcttttca
      181 attctataaa gcattctatg ttgggttaca tcttttaccg aacaagttac aatgatgttg
      241 agtgcagatt ccttttcgtc cgttgctatt tcataaccat ctgccttcaa taatcctgaa
      301 atcatctcgg aatcggctat gtttgcggaa catccatatg cttcaatcca tatttttttg
      361 ctacttttca gtactttgtt tttttcaggt tcaaatgttg ttgaggtttt ggttggatag
      421 gattaaattt ttgcattcct ttcgatacga tttatagact caatcatgcg aaggcttgat
      481 atttttatca aatactcaac actatccgat aacttctacc aattttaatc attttccttg
      541 attctctatt aaaagcgtga ctttccatga agcctatatg atataatatc tctatattct
      601 attcgataat cttgaactaa caattttata tatataacaa tcgttttttt aaaagacgac
      661 tatacagtgt acaataaaca ttaacgagtt tgataacctt aatgtaagcg attgaaatct
      721 ttgactacac tatatatgac tgacaacagc aaataccctc ttcattctaa taaattctga
      781 attactgact gtagcaatac aaaattctaa aagaatccta aatccaataa agacgtcgta
      841 gcggaaagca atttctttac atcattatga tcgtgagctt cagaaaacgc acccattttt
      901 aaaggtaaaa aaaatatccc atgattagcc attagagcta aattgtattt ttttaacagt
      961 tctctgttag agagggcaac atctgctgca ctctttatac ttgtaacttg ttcatttaga
     1021 aaatgaattt ggaaaagaga tcctgtacct gttacctcga cattaatttt tgaatctgaa
     1081 aaaatcttcc ctagatcctc tctggtttcc tctcccaggc tgttgatctt tggatatatg
     1141 ctatttttat tctttttaag atagttgata gttgcaaggc cagcagtcat agttattgga
     1201 tttgcagaaa aagtacctcc tccaatagca cagcaatttt ctttatcctt tcttaatact
     1261 ggatcggcaa gagacattat atctttatca ccgcatacaa ctccgatcgg caatccgcct
     1321 cctatgatct tgcctagtgt aaacaaatca ggctcgagtt tatagacgct agcagccccg
     1381 tgaattgata atctgagccc cgttacaatt tcatctaaga taaataaact atcatttctt
     1441 tttgcaaatt cctgaagacc gtgtaggtat ccatcgatag gggtgataca tccagcgccg
     1501 ccgaggacag gttcaataat aatgcaggct aaatcctctt taatagattc aagaacgctc
     1561 aatgatttct gaagatcgtt gaaggggatt gattttatat attgctcttc atctcgaatc
     1621 agaccacatc cctcttggat ttcgaaggga taatttacgt tatgcattaa tgatgtgtta
     1681 tagccatgcc atccacctaa aactttagca atcactctcc tcccggtttt tgctcttgca
     1741 agacgcacag cgtacatcgt cgcttcagaa ccagtgtttg aaaagcgaat atattcagct
     1801 cttggcatca ccttttgaat agtttctcca agatctacac tgatctcatt tgtcgtgcca
     1861 tatagtatgc ctttattaat ttgtttcaaa agtgaattgc aaactatatc tggagtatga
     1921 ccgagaatta acgcccagtg acccatccaa taatcagtat attcattgtc gtcaacatca
     1981 agaagatact tgcctctagc cgccttggta aagaaaggat aaggttcgaa aaagcgaata
     2041 ttatgattaa tgccacctgg aaagacattc gtagatctga aatagagaga tcttgatttt
     2101 ttcgtttttc gttcatatat ttccttataa ttattatatt ccatattcta aactcgagac
     2161 tttgatattc ttcatttgtt tatatagatg tttaaaaata tacatatgat caggaaaatc
     2221 ttcttgatgt ggtgtactgc tctaattctc tttcgtctag atgaaagcaa gatatacatt
     2281 ctaaaacaat ggtgattctc ttctagcaag atttatattt taattttgca aggtatttgt
     2341 aggaacgtaa caattaaagg cggcgtcggg atgattgtgg tcctagtgcc attttgtgat
     2401 tctccgacct ccagttgcgc tcataacatg gagattcgat actgagatta ttgaatctga
     2461 caatggtcac acgacccgca caa
//
LOCUS       DATAAS010000340         1883 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_371007, whole genome shotgun sequence.
ACCESSION   DATAAS010000340 DATAAS010000000
VERSION     DATAAS010000340.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1883)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1883)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1883
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_371007"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(902..1555)
                     /locus_tag="VHF08_05615"
     CDS             complement(902..1555)
                     /locus_tag="VHF08_05615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068158.1"
                     /translation="MLGDIDIRRMIEKTIDKIYDDFQNVDKRNPDRIHALEVSRCTRL
                     SYYERKDPLRDDKTARMSILLKDSIRRTFNNIRGEYKVGNLILEVNADMMINEEFIVR
                     FEVVANLPEIPHPRDLLYLNACLFAFNKSDGIIMYINLEGKTIGFSVTKNNRMFEEII
                     RRTRVLNTLLRESKVPIVEPSDLCLTCKYYQRCYYREKKTSNFSLETLLGLGKKGND"
BASE COUNT          615 a          291 c          291 g          686 t
ORIGIN      
        1 gtttcaactg gcattccctt aatattttat gatagcatac tgacaatata tgagcaagta
       61 acatttcttt tagcaagcca atatagcgtt tttccatatc tgtctcggtg gtggatctat
      121 ttggatatga taccatgaga tgtaaaacaa gttagcatag tgttgtaata ttgtatttct
      181 tttctgttat ttcaacccac tgttttgctt tggttcggct ttaatacttt acatgcgtta
      241 aagtcatttt taacatttaa cttttgaaag gtcgaaaaaa tagcaatgtg gacaaagcgg
      301 tgaacaaatt tttgtccgcg atgtacttgt ctgttctgtg ctagatagag atccgatctt
      361 tttaatttta tttttttcta ttataagaga caataatcgg ttaatattgc agcatataat
      421 tcctttcttt cctttatcct ttagcatctc tattgtttat aaaaaatgac aataacaagt
      481 tttatgaaag caaatactat gacactctag tacatcatta tgtaagattc ttaataccta
      541 taaaaatgca agatttaaca acaagacgga agtaaataat gaacaattaa tcaaattgtc
      601 tgttctttga acatgttaat tttttactaa attgatattt ttagttaaat cagcgtttaa
      661 ttttattgtt aatattattt ttataaaatc tgatagcaga taggataaaa atattagggc
      721 attcctagtt gatggcgaaa taataaatat atatatatat atataaatac atacatatac
      781 atacatactg aactaggttt cgttactatt atcttcgttt ttggagtggg agcaagacag
      841 gtagcaatgg atttgggtca aacaaaggtc acagtaatac ttctcttaat agtagtattg
      901 tctaatcatt cccttttttt ccaagaccaa gcaaagtttc cagggaaaag ttagaagttt
      961 tcttttctct ataatagcat ctctgataat acttacatgt taggcataga tctgacggct
     1021 ctactatagg gactttgctt tccctcaata atgtatttaa tacgcgtgtt cgtcgtataa
     1081 tctcttcaaa catcctattg tttttagtaa cagaaaatcc aatggttttt ccttccaaat
     1141 taatatacat tataattcca tcacttttgt taaaggcgaa aagacatgcg ttaagatata
     1201 aaagatctcg tggatgagga atttcaggaa gattagctac aacttcaaac cttacgatga
     1261 attcctcatt gatcatcatg tcggcattga cttcaagtat taagttacca actttgtatt
     1321 cgccacgaat attattaaat gtccttctga tgctatcctt aaggaggatg gacatccttg
     1381 cagttttatc atcgcggaga ggatctttgc gttcatagta tgatagacga gtacatctag
     1441 acacttcaag agcatgaatt ctgtcaggat tacgcttgtc tacattctgg aagtcgtcat
     1501 atattttatc aattgtcttt tcgatcatcc ttcttatatc aatatcgcct aacataccat
     1561 tcacagtgag cactttgaat tatatattac ttgaaaaaag ttaacgaatg atcttaatat
     1621 tatcgagaac agcatcaact tcccattgat aatagattgt ggtatatttg atcaaaaatg
     1681 catgagatag atggaattca agatcatcca tgggaagtga taatagtttt tcatgtgatg
     1741 ggataaaggc gcgacgtgat actaatacta tagttattat atatttaaac taaatataat
     1801 ttaattttta ttatttttca aacaagatta tgatttaagc taaataaagc ccgcaattac
     1861 agtcctaaga atatcttact tat
//
LOCUS       DATAAS010000341         5505 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_374043, whole genome shotgun sequence.
ACCESSION   DATAAS010000341 DATAAS010000000
VERSION     DATAAS010000341.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5505
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_374043"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            382..747
                     /locus_tag="VHF08_05620"
     CDS             382..747
                     /locus_tag="VHF08_05620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068159.1"
                     /translation="MNDEKEEKYDEEGGNEAEAIHEHINKMLLDKSRILGVAITDCIM
                     KHEIPLDVAFETLYKALIIMEYYLRDCQGFKTDKIEELKKIAKNNTTTTQIAFEQQPL
                     KMNDNREDEKDDDDEGAAV"
     gene            1038..2858
                     /locus_tag="VHF08_05625"
     CDS             1038..2858
                     /locus_tag="VHF08_05625"
                     /inference="COORDINATES: protein motif:HMM:NF014763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2068160.1"
                     /translation="MNLFSGRVKEISIISIILIIIISYGLFFYLQNITEHSIRSSLFE
                     QQEERQVQATKAISEHIGSDLRLVMSILQGLADSAYLQEGALSGDKTNKLMQEKYSQA
                     NNLTTVDGLFIADKDDIITSNIVSKGQKSFINIDISFRDYVKETRRTLTPTYSNGFEG
                     IDGKYRIAMTYPIINRETGEYVGLVGAEIPTIPFFEYYGNIYDIKSQYLAVLDRNSIQ
                     LIHPVKSFIGTPFFGSHTQEVTGHNPILNNIIRTVLSGKQDFDIYQFKNGERLNTGNP
                     IVVAGKPTYFIFIITPTSTIYSQINDVISVQRLQTFSLLAGITTAVVILIVFLIKWNS
                     SLDREVKRRTRELDESNRQFVLTNKKLEAANEQLKVHDNMQKEFINIAAHELRTPIQP
                     ILSLTEVLRFKIKDTQYVDLLSIIRRNAKRLQRLTDTILDVTRIESHSLKLNKERFNL
                     NDLISSIIDDYRNHIEKDNVEIKLLYKPNNKDNTIFVEADRERLIQVISNLLDNAIKF
                     TNDGTISIITEQRDSQVVVSIKDTGTGIDPEIMPRLFSKFVTKSERGGTGLGLFICKS
                     IIEAHGGKIWAENNNNIYDGKKGATFTFSLPVSIAASSYV"
     gene            2904..3974
                     /locus_tag="VHF08_05630"
     CDS             2904..3974
                     /locus_tag="VHF08_05630"
                     /inference="COORDINATES: protein motif:HMM:NF014647.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family protein"
                     /protein_id="HEX2068161.1"
                     /translation="MAVKGKHVSIITIGIIIAVIPISSQSSQLPAAAFSVTESTDQII
                     LVNIKHLKIALLTDALFSDAGWGAFAYNAGQAIKTKYGHEIDFKDNVAIPDIEATLRD
                     YADEGYDLIIAHGFEWGESAIKVGKEYPNTKFVVFTGLAKSANVASIFPMQQEGSFLL
                     GALAGMMSKTGVIGYVGGDVTYPNLVNIFEGYKQGAKLMNPNVKVLVTYLDDFDNPAK
                     GKEAAISQINAGADFLLHVADTSGQGVIEAAKEKGIYAFGAVSDQNKLAPETVLTSFV
                     LDVDKAYDQAVKMVQTDNFRGEIFKPGLEIGKGGVGDGIVYLAPFHGLENKVPEDVKV
                     RLNQLTHDIINKKIIVPERFYG"
     gene            complement(4372..4782)
                     /locus_tag="VHF08_05635"
     CDS             complement(4372..4782)
                     /locus_tag="VHF08_05635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2068162.1"
                     /translation="MQNNNDKNIVSKPTPYRIILIVDDEPDITSSLKMGLEYNGFEVH
                     TFNDPIEALSNFKAGSYDLVLLDIKMPKMNGFELCQEIKKEDEKVKICFLSAFEPSFE
                     EFRKQFPELNVRCFASKPISIYDLANRIKEEIES"
     gene            complement(5067..>5505)
                     /locus_tag="VHF08_05640"
     CDS             complement(5067..>5505)
                     /locus_tag="VHF08_05640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068163.1"
                     /translation="PIENQVFAQQQDQAISFTVQSTSMSAQDPLLSHQAHQAVIASPP
                     REDGKIYSGVATFTASQPVEAVVLHGYTPSQVSGQAHGEPVNAPFGNGKVSVSLMKQF
                     IDTPINAGSFVFTGNALAFHTLDGKLFTITYTVDAEVKSPTPQ"
BASE COUNT         1989 a          861 c         1015 g         1640 t
ORIGIN      
        1 ctttcaaaca tatgcttggg atcttatata tttcgatttc ttattatgca aatataagca
       61 agactgatta gtgctacttc tgacaagaac agaagcaaca attatcgtca gatctagatc
      121 agcaactaat tattttttgc acagtgtgta gaggggcttc gctatatttt ggaatctatg
      181 taaaccttca tgatctctat atgagaacta ttattctgga taggtactca atgccacaat
      241 cattaaatga agccttaata gtacatacca caagtatcaa agcgttttag aaacaccata
      301 acaagaaaac agagatagta tccaattcag tcagacatca cttgtagcac ttgtagctaa
      361 aagggggaga aaacgaagag aatgaatgat gagaaagaag agaaatatga tgaagaggga
      421 gggaatgaag cagaagcaat acatgaacat atcaataaaa tgttgttaga taaatcgcgg
      481 atactaggtg tcgctattac tgactgcatt atgaagcatg aaatacccct cgatgttgca
      541 tttgagactt tatacaaggc tttaataatc atggaatatt atctgcgtga ctgtcagggt
      601 tttaaaactg ataagatcga agaactaaag aagatagcaa aaaataacac tacgactact
      661 cagatcgcat ttgagcagca gccgctgaag atgaatgata atagagaaga tgaaaaggat
      721 gatgatgatg aaggtgcagc agtctgactg gtgaagtaaa agatccagaa gagtaatcac
      781 aagaggacat taattgaaga aatagaggaa ggagaagatg ccatagaaga tagtgacaac
      841 gaacggtaat cagtagaact agaatagaca aaaagaagga tcaagggtta caacctacga
      901 gcactcgtta tcgcctatgg acgatgcgag gaagcaagca ataattacaa gtacaaagtt
      961 ggtcgggctc tgttgaaaag agagagacag attatatata tatatattgt tagtattaat
     1021 ttacaagtga aaattacatg aatctcttct ccggaagagt caaggaaata agcattattt
     1081 ctattatctt aattattatc atttcatatg gcttattctt ttatcttcag aatattaccg
     1141 agcatagtat cagaagcagt ctatttgagc agcaagaaga gcgtcaggtc caagctacaa
     1201 aggctatttc agaacatatt ggctctgatc tccgtctagt tatgtctatt cttcagggtt
     1261 tagcagactc tgcatatttg caggaagggg cactatcagg cgataaaact aacaagttaa
     1321 tgcaagaaaa atatagtcaa gccaataatc taactacagt tgatggactt ttcattgctg
     1381 ataaagatga cattataact tctaacatag tttcaaaagg acaaaaaagt ttcattaata
     1441 tcgatatttc atttagagat tatgtgaaag agaccagacg tactctgact ccaacatatt
     1501 ccaatgggtt tgagggaatc gatggcaaat ataggatagc catgacttat ccaataataa
     1561 acagagagac tggagaatac gttggattag taggagcaga aatacccaca ataccatttt
     1621 ttgagtatta tggaaatatc tatgacataa aatcacagta tctagcagtt ttggatagaa
     1681 actctattca attaattcat ccagttaaat catttattgg gacaccattc tttggcagcc
     1741 acacacaaga agtcacagga cacaacccaa tcctaaataa catcatacga acagtattgt
     1801 caggaaaaca agattttgat atataccaat ttaagaatgg tgaaagacta aataccggga
     1861 atcctattgt tgttgcagga aaacccacat attttatttt tataataaca cctacttcaa
     1921 caatttattc gcagatcaat gatgtgattt ctgtacaacg attacagaca ttttcactac
     1981 tcgcaggcat aactactgca gttgtaatcc taattgtctt tcttattaaa tggaatagca
     2041 gcttggatag agaggtaaaa agaaggacaa gagaattaga tgaatcaaat aggcaatttg
     2101 tactaaccaa taaaaaatta gaagcagcaa atgaacagct aaaagttcat gataatatgc
     2161 aaaaggaatt tatcaatata gcagctcatg aattacgaac tcctatacaa ccaatactta
     2221 gtttaactga agttcttcgc tttaaaataa aagataccca atatgttgat ttactatcta
     2281 ttattagaag aaatgcaaaa agactacaaa gacttacaga taccatacta gatgttacaa
     2341 gaattgaaag ccattcgcta aaactaaaca aagaacggtt taacctaaat gatttgatat
     2401 caagtattat agatgattat agaaatcata ttgaaaaaga taatgtagag ataaaattat
     2461 tgtataaacc taataacaaa gataatacaa tatttgtaga agcagataga gaaagattaa
     2521 ttcaagttat ttcaaactta ctagataatg ctatcaaatt caccaacgat ggaactatat
     2581 ctattatcac agaacagaga gatagtcaag tagttgttag tataaaggat acaggtactg
     2641 gaatagaccc agaaataatg ccaagactat tctcaaaatt tgttacaaaa tctgaaagag
     2701 gaggtacagg attaggattg tttatttgta aaagtattat agaagctcat ggaggcaaga
     2761 tatgggctga gaataataat aatatttatg atggaaaaaa aggagctaca tttacattta
     2821 gcctaccagt aagcatagca gcatcctcat atgtgtaatt ttttaataaa caatattatt
     2881 accattttta aacatttgct gctgtggccg taaaaggaaa gcatgtatct ataataacaa
     2941 taggcataat aatagcagta ataccaatat ctagtcaatc ttcacaactt cctgctgctg
     3001 cattttctgt aacagaatca acagatcaga ttatactggt gaacattaag cacctaaaaa
     3061 tagcattatt aactgatgct ttattcagtg atgcgggctg gggtgcattc gcatacaatg
     3121 ccggacaagc aataaaaact aaatatggtc acgaaattga ctttaaagat aatgttgcaa
     3181 ttccagatat agaggcaaca ttaagagatt atgctgatga aggttatgac ttgattatag
     3241 cccatggttt tgaatgggga gaatcagcta taaaggtagg aaaagaatat ccaaatacaa
     3301 aatttgtagt ttttactggt cttgctaagt cagctaatgt tgcttccatt ttcccaatgc
     3361 aacaggaagg atcctttcta ttaggagctc ttgccgggat gatgtcaaaa acaggtgtga
     3421 ttggttatgt cggtggagat gtcacatatc caaatcttgt caacattttt gaaggatata
     3481 agcaaggtgc aaagttgatg aatcctaacg ttaaggtact tgttacctat ttagatgatt
     3541 ttgataatcc cgctaaagga aaggaagcag caatatcgca aataaatgct ggtgctgact
     3601 ttttattaca tgtagctgat acatctggtc aaggtgttat tgaggccgct aaagaaaagg
     3661 gaatatatgc atttggtgcg gtctcagatc agaacaaact ggccccagaa actgttctga
     3721 cctcgtttgt cttggatgta gataaggcgt atgaccaagc tgttaagatg gttcaaacag
     3781 acaatttcag aggagaaata tttaagcctg gactagaaat aggcaaaggg ggcgtaggag
     3841 acggtattgt ctatctagca ccattccatg gcttagagaa taaagttcct gaagatgtaa
     3901 aagtgaggct aaatcaatta acacacgata taataaacaa gaagatcata gtgccagaga
     3961 gattttatgg ataggaaaag agatacaatc atagttatgc tacgaacaaa acgataatct
     4021 gaaatatata tagatatgaa gaagaaaaag aaagctcaaa gtaacgaacc tatttttgaa
     4081 caaaaaatag actgattaaa tagaacagaa actcataatt ataaatttga attataagaa
     4141 tacacacata caaaacagta tagtctaata ggattacaga tattttcact gttttactaa
     4201 agaaattgaa tagtagattt gttttctttt atttgctatt agtagttatt taccatcagc
     4261 aggaactaca atacaacaga ggacatacca ccataccaca agtatgtatg ttatctctgt
     4321 aatactcaaa aatactagtc aaaggaaatt atcacgcctt tataattatg actacgactc
     4381 tatctcttcc tttattctgt tggccaaatc atatattgaa atcggtttag aggcaaagca
     4441 tcttacatta agttcaggga actgctttct aaattcttca aaagatggct caaatgctga
     4501 caaaaaacat atcttgacct tttcgtcttc cttttttatt tcctgacata actcaaagcc
     4561 attcattttt ggcattttaa tatcaaggag taccagatca tatgaaccag ccttaaaatt
     4621 tgataatgct tctatggggt cattgaatgt atgaacttca aatccattat attctaaacc
     4681 catcttcaaa cttgaagtaa tatcaggttc gtcatctaca atcagaatta ttctatacgg
     4741 agtaggtttg cttacaatat tcttatcgtt attgttctgc ataactattt cttcttgtga
     4801 tcattgtttt agttgtgcta tatttgatta ttgtttggat gtgaatgttg ttgttgttat
     4861 tgttgctcat catctaatac catgatcctt ttttgtccgt tatcatctta ttggctagca
     4921 atttcgtcga tgtgttaatt tgcaacagca aaatctatct aagtacagat atcaattttt
     4981 atgaaaatat agagcatgtc atcttgtcaa tcgtaatgac tggcaaattc tagtataaaa
     5041 aaagaattaa gaataataca taatagttat tggggtgttg gagattttac ttcagcatcg
     5101 actgtatatg ttatagtaaa tagttttcca tctaatgtgt gaaaagctaa tgcgttacct
     5161 gtaaacacaa atgaacctgc attgatgggt gtatctataa actgcttcat caaagagaca
     5221 gaaacctttc cattaccaaa tggggcatta actggttcgc catgtgcttg gccagatact
     5281 tgagaaggag tgtacccatg cagaactact gcctcaactg gctgacttgc agtgaatgta
     5341 gctacacctg aatatatctt gccatcttct cttggtggag atgctattac agcttgatgt
     5401 gcttgatgac taagtaaagg gtcctgtgca gacatgctag tgctttgtac tgtaaatgaa
     5461 atagcttgat cttgctgttg agcaaacact tgattttcta ttgga
//
LOCUS       DATAAS010000342         2383 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3067864, whole genome shotgun sequence.
ACCESSION   DATAAS010000342 DATAAS010000000
VERSION     DATAAS010000342.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2383)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2383)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2383
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3067864"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            214..1152
                     /locus_tag="VHF08_05645"
     CDS             214..1152
                     /locus_tag="VHF08_05645"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:TIGR03619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03619 family F420-dependent LLM class
                     oxidoreductase"
                     /protein_id="HEX2068164.1"
                     /translation="MKIGILLPLAGQQATRGNIIQTAKLAEQEDFDSLWVFERLLWPL
                     NPQTPYPATPDGSLPIEYQKVFDPLETLTYIAANTNKISLGTAVIDMLFHNPVILARR
                     FATLDVLSEGRAIAGLGIGWSKDEYQASNIPYENRGKRADEFIQALKKIWTEDVVEFK
                     GEYYNIPASKIGPKPIQNPHIPIYLGGFSPNTYSRIVNYDANGWLGLVGGPLEYLENT
                     IKAIKDIANKANKDPNIFNIILLTYPDIDDSKNRSTNEVQRFPLTGTIDQIGSDIKRI
                     KDMGVEHIIFAYNFIPSGRDVDNMIDKTKQLSKFAK"
     gene            complement(1184..1651)
                     /locus_tag="VHF08_05650"
     CDS             complement(1184..1651)
                     /locus_tag="VHF08_05650"
                     /inference="COORDINATES: protein motif:HMM:TIGR03668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03668 family PPOX class F420-dependent
                     oxidoreductase"
                     /protein_id="HEX2068165.1"
                     /translation="MKFINDIRLKAIINKARVARLATVDSEGKPHLVPVVFAYDGEHY
                     YIPIDKKTKQKPSEPEKLKRVKNIQTNPNIALLVDEYNEDWTKLYFVMVQGRALLISN
                     KKGDQEDELLLSEKAHKLLAEKYHHYQKIGIGEYVIMIYPQKIITWKNEGFNN"
BASE COUNT          861 a          371 c          381 g          770 t
ORIGIN      
        1 acaataatga agaatatctt aaaatcaaaa gagctgtaaa gaagaagtta ataaattcta
       61 agaaatagta aggtattctt acaattccgt cttgcatact aatcgggtcg ctaaagagaa
      121 agcctgacaa atataataat ctttagctta taacatgcca tcatcatcat caactattac
      181 cttttaatag tagtaacgaa attgaaaatt accttgaaaa ttggtattct tctaccatta
      241 gctggtcaac aagctaccag aggaaatata atccagactg caaagctagc tgaacaagag
      301 gattttgatt ctctatgggt ttttgagcga cttctttggc ctttaaatcc acaaacacct
      361 tatcctgcaa ctcctgatgg cagtcttcct atagagtacc aaaaagtctt tgatccatta
      421 gaaacgctta cctatatagc tgcaaataca aacaaaattt cattaggaac agctgtaata
      481 gatatgctat ttcataatcc tgtaatacta gcaagaagat ttgctacact tgatgtttta
      541 tcagaaggaa gagctatagc agggcttggt attggttggt caaaagatga atatcaagct
      601 tctaatattc catatgaaaa tagaggtaaa agagcagatg aatttattca agctttgaaa
      661 aagatatgga cagaagatgt tgtagagttc aaaggagaat actacaatat tccagcatca
      721 aaaataggac ctaaacctat tcaaaatcct catattccaa tttatcttgg tggatttagt
      781 ccaaatacat attcaagaat tgtaaattat gatgcaaatg gttggttagg tctagtaggt
      841 ggacctcttg aatatcttga aaatactata aaggctataa aggacatcgc taataaagca
      901 aataaagatc caaatatctt taacataatt cttttaacat atcctgatat agatgattca
      961 aagaaccgat caacaaatga agtccaaaga tttccattga ctggaacaat tgatcagata
     1021 ggtagtgata tcaaaagaat caaagacatg ggagtagaac atataatatt tgcctataac
     1081 ttcatacctt caggtagaga tgttgataac atgattgata aaacaaaaca gctttcaaag
     1141 tttgctaaat aaaagtgaaa aatattaata ataatataac gaattaatta ttaaatcctt
     1201 cattcttcca agttattatt ttttgtggat atatcattat aacatattct ccaataccaa
     1261 ttttttgata atgatgatat ttttctgcca gtagtttgtg agctttttct gataataata
     1321 gttcatcttc ttgatctcct tttttattac ttattagcaa tgctctcccc tgaaccataa
     1381 caaaatagag ctttgtccag tcttcattgt attcatctac aagcaatgca atatttggat
     1441 ttgtctgaat gttcttgact ctttttagtt tttcaggttc ggaaggtttt tgcttagttt
     1501 tcttatctat tggtatatag taatgctctc catcatatgc aaacacgact ggtaccaagt
     1561 gcggcttacc ttctgaatct actgtagcta atctagctac tctagcttta ttgattatag
     1621 ccttaagacg gatatcatta atgaacttca tcaaaagaat atggtgttac ggctttttac
     1681 tgctatctgt tgctgtcaaa tattgctctg ctttttcctc cttggtttct cttttatatg
     1741 caatttcgga aagagaaatg ccaatagcag caatcggact gtcaagtcaa ataataatat
     1801 ttgcagctaa aataatggaa gttttatata ggtgattgca aaccttctcc tctgaagact
     1861 aactattctt aaagaaggga aagaagagga gtaattgtag tagtaagtct attgtagaac
     1921 ataagtataa ggataaagaa atagataaga tatcagaaaa gaaagaagta aaggagaaaa
     1981 caaaagtgaa gcattaccat ataattgcaa aggaatgtgt aattaacaag ttaggtttgt
     2041 taactaattc ttcagtagat gatgataatg aagttcgtac cctagaaaaa taacaatcat
     2101 caaaatataa actgaagctg ttttctctat acaagagtct aaagaccgaa agtatgagca
     2161 taatgaagag aaaacagcag aaataacgat tactacaaat ccgaatttcg aattattgta
     2221 atatgtaccc tgttcaattt ttactcacat tacattttca tgataactta tttattattc
     2281 catggagaca cttgttaatt acaaagtaaa aatggtagca gatcctttag accgatcagt
     2341 cttatcatat attcatggac aatttattgt tctacaggaa gac
//
LOCUS       DATAAS010000343         3152 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3068788, whole genome shotgun sequence.
ACCESSION   DATAAS010000343 DATAAS010000000
VERSION     DATAAS010000343.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3152)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3152)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3152
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3068788"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..591
                     /locus_tag="VHF08_05655"
     CDS             <1..591
                     /locus_tag="VHF08_05655"
                     /inference="COORDINATES: protein motif:HMM:NF039287.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEX2068166.1"
                     /translation="SITPYSQSDINFDWDSFLEKINNELIANIGNFINRALTFTVKQF
                     NNKVPEPTSYDIEDLSSIDEIKVISAEVGSLLSQNECDKALKRILKFTTHFNQYFQKK
                     QPWSNINQAATTVYIAVNAVRSISIMLEPFIPFSSEKIWSQLGMSGAVHQQEWQSVSE
                     LKISAGHTLGTIEPLFRKIERTEIEQQKARLGKKDE"
     gene            584..1126
                     /locus_tag="VHF08_05660"
     CDS             584..1126
                     /locus_tag="VHF08_05660"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000309 - nicotinamide-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide adenylyltransferase"
                     /protein_id="HEX2068167.1"
                     /translation="MNEKITRGIMVGRFQPFHKGHLSLAKQIFQDCEELIIAIGSAQF
                     NYISQDPFTAGERILMIHQALLEARLDLTKCYIVPIINDENNARWFAHLRSMVPHFDI
                     LFSGNQFVRSLVAENVKIKKPQFISKKYYNGTYIRKTIAERENWQKLVPNGVAEIIEE
                     IGGVGRIKMISHSDSNPQRW"
     gene            1433..2431
                     /gene="ilvC"
                     /locus_tag="VHF08_05665"
     CDS             1433..2431
                     /gene="ilvC"
                     /locus_tag="VHF08_05665"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEX2068168.1"
                     /translation="MTAKRWLDDEVNLGSIKDETIAVIGYGIQGRAQANNMKESGLKV
                     IVGLRKNGNSWKLAHNDGHEVVEIGDAAAKADIIHILIPDMEQANTYREEISPHLREN
                     KAISFSHGAAIHWQWIEPPKNIDVIMVAPKGPGQRVRELYSEGFGTPSLVAVFQDYTK
                     TAWNRVLAMAKGIGSTRPGVIQTTFKEEVETDWFGEQADLCGGASALVMHAFETLVEA
                     GYQPEVAYFECLHELKLIVDLIHKYGITGMYNRVSETARYGGLTKGPKIIDRDSKIKM
                     INVLKDIQSGQFAEEWVEIYRKEGKNSFARYMKEIEDHPLEKIGKDIRKMMWPNES"
BASE COUNT         1121 a          488 c          606 g          937 t
ORIGIN      
        1 tcaataacgc cctactcaca atcagatata aatttcgact gggattcctt cttggaaaaa
       61 attaataatg aacttatagc aaatattggg aattttatta atcgggcatt gacatttact
      121 gtaaaacagt ttaacaacaa agttcctgag ccaacaagtt atgatataga agacttatca
      181 agtatagacg agattaaggt tatctctgcc gaagtcggtt ccctgttatc tcagaatgaa
      241 tgtgataagg cattgaagcg aatcctgaaa tttacgactc attttaatca atattttcag
      301 aaaaagcaac catggtccaa catcaatcag gctgcaacaa ctgtgtatat tgccgtaaac
      361 gctgtcagat cgatttctat tatgctagag ccttttattc cattctctag cgagaagatt
      421 tggtcccaat taggtatgtc gggagccgta catcagcaag aatggcaatc tgtatcagaa
      481 ttgaagattt ctgctggtca tactcttgga actatcgaac ctctttttcg taaaattgaa
      541 cgtacggaga ttgaacaaca aaaagcaaga ttaggaaaaa aggatgaatg agaaaataac
      601 acgtggaata atggtgggcc gctttcaacc ttttcataaa ggacaccttt ctcttgccaa
      661 acaaatattc caagattgcg aagaattaat aattgcaata ggaagtgcac aatttaacta
      721 tatatctcag gatcctttta ctgctggcga gagaatttta atgatacacc aggcattatt
      781 agaggcacgg ctagatctta caaagtgtta tattgtacca attatcaatg atgaaaataa
      841 tgcaagatgg tttgcgcatt tgagatcgat ggttcctcat tttgatatct tgttttctgg
      901 caatcaattt gtcaggagcc ttgttgcaga aaatgttaaa atcaagaaac ctcaattcat
      961 atcaaaaaag tactacaatg ggacttatat acggaaaaca atagccgaaa gggaaaattg
     1021 gcagaagcta gtccctaatg gtgttgctga gataattgaa gaaataggag gtgtcggaag
     1081 gattaagatg atatctcact ctgatagcaa tccacaaaga tggtaaatct tgataaacgg
     1141 tctaggtcat gccccgtttg tcctaattgc ggctcgaaaa aatttaagat tttccagcat
     1201 cttcaggaaa gagtgattat agaatgtctg agatgtacta aaagaatcag tatttgagat
     1261 gacatgacag tctataattc attagtaaag tcttaataaa aaactgaaga ataaattgtc
     1321 tttaaatgcc tgatttagga taatcataac attataaaaa ggacaaattg catatatttg
     1381 catctttttt gagataatag cgcatatata taccggttcc tcactcatgc ttatgactgc
     1441 taaaaggtgg cttgatgatg aagttaatct cggttcaatt aaggatgaaa caattgcagt
     1501 aataggttat ggtattcagg gtcgagcgca agccaataat atgaaggagt ctggtctaaa
     1561 ggtaatagtt ggtttaagaa agaatggaaa ttcttggaaa ttggctcaca atgatggtca
     1621 tgaagttgtg gagattggcg atgctgcagc taaagcggat attatccaca ttttaattcc
     1681 agatatggaa caagctaata cctacagaga agagatatct cctcatctta gagaaaataa
     1741 agcaataagt ttctcgcatg gagccgctat tcattggcag tggatagaac caccaaagaa
     1801 cattgacgtc ataatggtgg caccaaaagg accaggccaa cgggtgcgcg agttatattc
     1861 tgagggtttt ggtactccat cattagtcgc tgtattccag gattatacta agactgcatg
     1921 gaatagagta ttggctatgg ctaaaggaat cggtagcacc agaccaggag taattcaaac
     1981 tacttttaaa gaagaagttg agactgactg gttcggagaa caggcagact tatgtggagg
     2041 tgcttccgca ttagtcatgc atgcatttga aaccttagta gaggcaggat atcaaccaga
     2101 agttgcttat ttcgaatgtc ttcatgaatt aaaattaatc gttgatctta ttcataaata
     2161 tggcattaca ggaatgtata accgtgttag tgaaactgct agatatggag gattgactaa
     2221 ggggccgaaa attattgata gagattcaaa aataaagatg ataaatgttc tcaaagatat
     2281 acagtcagga caatttgcag aagagtgggt cgaaatttat aggaaagaag gtaaaaattc
     2341 ttttgctaga tatatgaaag agatcgaaga ccatcctttg gaaaaaatag gaaaagatat
     2401 acgcaaaatg atgtggccaa atgaatccta attgatggat gtacatcttt attaatagag
     2461 tttcatctta gccaaaattc tttagatatt gactaaccaa tgagatgcct gcaatatctt
     2521 ttatatcctc taaatcctga tagaagaaaa acaataccaa aaactgatta acaaatattc
     2581 ataagtaata gaaagttcaa gatattaata atatcgatat ttgtatattc taatatcttt
     2641 attatcaatt ttaaaaagta tatcatatct taggggtctt gatgataaca ccaagtcatt
     2701 agaacggcta tctaatcaaa aagagaagaa gatatacata gaaaataaac aagagaattc
     2761 ataggagata gctattcaaa tggtatatca gaatcagtat tcataaaagc ttgagcatga
     2821 tattgtatcg cctgttattg catatctaca gataatcaag aatttctttc cgtcttgtaa
     2881 aagatcccat cttttctgaa caaacctctt aaacttccta tcacaatagc aggcattgta
     2941 catacgttta aaattaataa gtagaataag tctctaatat tatatttttc tatagtgcta
     3001 caaagaggta ctgccataag gctagttcca ataacagtta agagattagc aatttgtata
     3061 attaatgttg ctttcattag attattgctt atgatgaaat cgattccatt gctaatcagt
     3121 attgtaaagt ctataatgat caaagcaagc ag
//
LOCUS       DATAAS010000344         3242 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2541706, whole genome shotgun sequence.
ACCESSION   DATAAS010000344 DATAAS010000000
VERSION     DATAAS010000344.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3242)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3242)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3242
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2541706"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(333..1709)
                     /locus_tag="VHF08_05670"
     CDS             complement(333..1709)
                     /locus_tag="VHF08_05670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068169.1"
                     /translation="MAGIVAVYNHGADTPMNIIYYLTHSMRMLQHRGKAYWKMAIGNA
                     VVEREGSLPSDENILKIAKKQKLLGDNGIGYLSKRSPQFPSMKLIQASIDGFFVDTEK
                     LYLHPNIGQAKESDSLFKIYHIFVDLLIKKQNPERAAEFLDRHLKGNIILKLHHHIYA
                     YRNSSGFKPLVTATNKSKTLSIIASENSLRTSLVDMHFNDVDPGQLIMMSKENGLEVL
                     ADLSGDRVMMDPFEFIRESHVTAIVNGKSIYAIRKNIGKEQANFLATDIDIDSAYAEP
                     DYTRPMTLGFSIEYQKYSKTFEAAEGIIKDRYDDSDHMIDFSEQTSKNKLLTSGKSLK
                     FIIRNHVHNKKIATIQGTIQTGGTVKETIYYLRQAGVSRIYVIVCYVPTVDGRQVGLY
                     TQNRELIANKYIGEVSSIDELNESLKKEINADAVYYNSPTILARGIGVSENDLWFPEW
                     VRFLDYVK"
     gene            1941..3143
                     /locus_tag="VHF08_05675"
     CDS             1941..3143
                     /locus_tag="VHF08_05675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEX2068170.1"
                     /translation="MLIGIIGKANVGKSTFFNAATELAVQAANYPFTTINSNVGITHA
                     RQKCVCTEFGVQDNPIHSICIDGNRFVPLNLIDIAGLVPGAHSGKGLGNKFLDDARQA
                     DALIHIVDASGSTDSEGKPISPGTGDPISDIRFVEEEFDLWLASVVSRDWNKVSREAE
                     SQGQKLEQMLAKRLSGLAIGSRQIADALDETGLRYKKTISWTQEDIFSFCKTIRLKSK
                     PIVLAANKADLPTVDKNINAMKKTGRDVIVCASEAENLLRRAAKKGIIHYLPGDNSFN
                     VKQEAELNDQQKKALSIISNILSKYGSTGIQEVINYACFKLLNLIVVYPVEDDLKLTD
                     KKGNILPDARLLPQGSTARDLARTIHADLAKGFLYAIDIRSKQRLSSEYKLKNNDIIK
                     IVSATSRS"
BASE COUNT         1039 a          588 c          575 g         1040 t
ORIGIN      
        1 cctgagaatg gttgtcgaat tgtagataaa ttttctcagc tgttcgtctg gattcaccat
       61 aaatggtttg gacaacacat gcaaatagaa attgattcta aatagaggaa atttctctca
      121 aataatctct cactgattga tatatctatt caatactgat caacaaaatt attgagtttt
      181 ctaaatacgt ttgtaagagc gtttactgta aagctttatt tgatgtattg gtttttgatt
      241 tatatctatt atggtaatgg agaaattaaa ttaagaagtt tgtgagaata actacgtctt
      301 tgctcaatac tagtcagtat agcttttttt catcatttaa cataatctaa aaatcttacc
      361 cattcaggga accagagatc attttctgaa acacctatac cacgcgcaag aattgtaggc
      421 gagttatagt aaactgcatc tgcattgatt tcctttttca atgactcgtt tagctcatct
      481 atggatgaaa cttcgccaat atacttattt gcaattaatt ccctattctg tgtataaaga
      541 ccaacctgac ggccatctac cgttggaaca taacatacta taacataaat gcggcttact
      601 ccagcttggc gtaaataata gatcgtttcc ttgactgtac ctcctgtctg aatggtacct
      661 tggattgtcg ctattttctt gttatgaaca tgatttctta ttatgaattt tagtgatttg
      721 cctgatgtga gtaatttatt tttgctagtc tgttcggaaa agtcaatcat atgatcggaa
      781 tcatcatatc tatccttaat tatgccctca gcagcctcaa aagttttgga atatttttga
      841 tactctatgc taaatcctaa agtcatagga cgagtataat caggttcagc atatgctgaa
      901 tcaatgtcta tatcggttgc taaaaaattt gcttgttctt tcccaatatt ttttctaatg
      961 gcatatatac tcttgccatt gactattgct gtaacatggg actcgcggat aaattcgaat
     1021 ggatccatca tgactcgatc tcccgataga tcagcgagaa cttccaatcc attctcctta
     1081 ctcatcatta tcaactgacc aggatccaca tcattaaaat gcatatcaac caacgatgtc
     1141 cttaacgaat tttctgatgc aataatgctt aaagtcttag acttgttggt agcagtgaca
     1201 agtggcttaa aaccactact atttctataa gcatagatgt gatggtgcaa ttttagaatt
     1261 atattgccct tcaaatgcct atccaagaac tctgctgctc gttcaggatt ttgttttttg
     1321 attaacaaat ctacaaatat gtgatatatt ttaaaaagag aatctgattc cttggcttgt
     1381 ccaatattag gatgcaagta taacttttcg gtatctacaa agaagccatc aattgatgcc
     1441 tgtattaact tcatgcttgg gaactgtggt gatctctttg aaagatatcc tatcccatta
     1501 tcaccaagta acttttgttt cttagcgatt ttcaaaatat tttcgtctga gggaagcgat
     1561 ccttctcttt caactacagc gttccctata gccattttcc aatatgcttt acctctatgc
     1621 tggagcattc gcattgaatg tgtgagataa taaattatgt tcatcggtgt atctgcaccg
     1681 tgattataaa cggcgacaat tccagccaat tagttaccat gttgtcttaa ttattgagcg
     1741 gataaaaatc ttgtctgcat taaaatccta tattataaat attatttaca attccaaacc
     1801 ttgataacat tatgttttca gaaaatgaat taattcttgc ctgaatataa caatacgtta
     1861 ctctgttgta ttataataat tactgatctt cttattgctg aaaaacatta atcaggctat
     1921 actatgatta tattattatc atgctcattg gtattatagg caaggccaat gttggaaaat
     1981 ctactttctt caatgcagca acagaacttg ctgtacaggc tgcaaattat ccatttacaa
     2041 ccatcaattc aaatgttgga ataacacacg ctagacagaa atgcgtttgt acggaatttg
     2101 gcgtccaaga caatccaatt cattcaatat gcatcgatgg caacagattt gttccactaa
     2161 atttaatcga tattgctggc ctggtacctg gcgcacactc gggcaaaggc ctaggcaaca
     2221 agtttttaga tgatgcacga caggcggatg ctcttatcca catagtggat gcatctggtt
     2281 ctacagacag tgagggtaaa cccattagtc caggtacagg agatccaata tctgatatta
     2341 gatttgtaga ggaagagttt gatctttggc ttgcctcagt tgttagcagg gactggaata
     2401 aggtctctag agaggcagaa agtcaaggac aaaaactgga acaaatgctt gctaaacgat
     2461 tatcaggact agctattggc tcccgtcaga tagccgatgc tctggatgaa acaggccttc
     2521 gttataaaaa gacaatatca tggactcaag aagacatttt tagtttctgc aagacgatca
     2581 gattaaaatc aaaaccaatt gttctagccg caaataaagc agatttacca acagtagaca
     2641 aaaatattaa tgcaatgaaa aaaactggtc gtgatgtgat tgtctgcgct tcggaagcag
     2701 aaaacctact cagacgagct gccaagaaag gaattattca ttacctgcca ggagataact
     2761 ctttcaatgt taaacaagaa gctgaattaa atgatcagca aaaaaaggcg cttagcataa
     2821 taagcaacat actttcaaaa tatggctcaa caggaataca agaggtgata aattatgcat
     2881 gctttaaact attgaatttg atagtggtat atcctgtaga ggatgatctc aaattaacag
     2941 acaaaaaagg taatattctt cctgatgcgc ggttgctacc acaaggatcg accgcaagag
     3001 atttggcgcg cacgattcat gctgatttgg caaagggttt cttatatgcc atagatatac
     3061 ggagtaaaca gcgattgagt tcagagtata aacttaagaa taatgatatt atcaaaattg
     3121 tttctgcaac aagtagaagt tgatataaaa tatgatatcc ctaggaatag aaagcactgc
     3181 ccatacattt ggttgctctg ttgtcgaaga taacccgatg aatataaaaa ttggcaaagt
     3241 ac
//
LOCUS       DATAAS010000345         3798 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3069202, whole genome shotgun sequence.
ACCESSION   DATAAS010000345 DATAAS010000000
VERSION     DATAAS010000345.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3798)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3798)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3798
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3069202"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            436..654
                     /locus_tag="VHF08_05680"
     CDS             436..654
                     /locus_tag="VHF08_05680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068171.1"
                     /translation="MNEQTQMYAMRLRRLYQQSYSDMDSFDEVSSEISTTVNNLLKHA
                     LYPEVKEDDMDGVIQQVLKMFEKSSQRK"
     gene            844..2184
                     /gene="thrC"
                     /locus_tag="VHF08_05685"
     CDS             844..2184
                     /gene="thrC"
                     /locus_tag="VHF08_05685"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEX2068172.1"
                     /translation="MRSQAIKRCINASCGFTYEINNDIYRCTCGSLLDIIYGERPSRS
                     LIDTFYERRNHGGNIYNESGVWRFRELINFYAIDIENFNECARVLVSLDGAEGRLSRP
                     YQMSKVADYADMKHDSFMLQPEGYNPSGSFKDNGMSTAVTHAKMLKVKKLICASTGNT
                     SASAAMYAANENMECDVYIPKGEVAPGKLGQAFQFGAQVIQVDGNFDDALSSSLKDAK
                     EFSAYTVNSVNPFRLEGQKTIVYRVMEYLNWNPPDWIVYPGGALGNTSSCGKAFMELY
                     QWGWIKKIPHIAVVNSEGANTFYELTNGVFESKKLNWNNGRPDLGMIERYYTVKHKEG
                     IVPKTQATAIQIGKPANIVKALRAIDFTKGVVIQVNDQEMSDGMSVVGLNGFDCEMAS
                     GAVPAGVRKLRNEDIIKKDDVVVGILTGRQKDPGLLVTYHTNANNMFSRPPKNN"
     gene            complement(2609..>3798)
                     /locus_tag="VHF08_05690"
     CDS             complement(2609..>3798)
                     /locus_tag="VHF08_05690"
                     /inference="COORDINATES: protein motif:HMM:NF025042.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4147 domain-containing protein"
                     /protein_id="HEX2068173.1"
                     /translation="GAGKGTAKMAKALSHILKGKITHGAINVPYGNKTHLDSISITEA
                     NHPIPDEAGVEGTNKIINILKKTHRSDLVFVLISGGGSALMPFPVSGLELDDKKKITC
                     NMLASGASIDEINIVRKHLSLIKGGRLVRFVKSGCTIFSLILSDVIGDDIATIASGPT
                     VPDTSTFKDVAFILRKYHIFDNKTLEKSKIFTIIKKGLEGSIDDTPKPGNSIFKNVYN
                     FLIGNNTLACNNAVESLRKNNIQVIHLGSSFNGQAIDFGRLLGKLTTDLAISSLPIAF
                     VLGGETTVKLNKRKENGKGGRNQEAILSAATKCFFEDRDDISIVSMGTDGIDGNSLAA
                     GGFLTPKTLYLIQKKSINLKKYLKNHDSHTALKKIGSSLVSGPTGTNVNDIAIICIMK
                     NLK"
BASE COUNT         1259 a          602 c          700 g         1237 t
ORIGIN      
        1 acaataaatc atttaataaa aatgctctca atggacagga gggatggttt tcctttatat
       61 aaattctata atttactata aatgatatag aaaaatattt accttaatac agtaagcatt
      121 agaatatagc ttgtttatgg atttacctta gatccttgta tcgaatgttt taatttaata
      181 attgaaatat atatttcata tttcgagttt agaaatattt gagcaatcgc tacgtttata
      241 cgcgcaaaat ttatgaaaca tacgtaatat attggagaat gctatcaaga tttccttgct
      301 cttaataaat aattaattca atgtctatct tcagaagggg ttatcctgtg ggaagttttt
      361 taaacatctc ctacaactaa aatctgaatg ataaaggaaa agatcaaagt caatgatcgc
      421 acttataacg tgaatatgaa tgagcagact caaatgtatg ccatgagact aagaagatta
      481 tatcaacaga gctacagtga catggacagt tttgatgaag ttagttcaga aatatcgaca
      541 acagtaaaca accttttaaa gcatgcttta tatccggaag ttaaagagga tgacatggat
      601 ggagtaatac aacaagtact aaagatgttt gagaagtcct cacaaaggaa gtaactttag
      661 atagaataag aatttcctag taatgttttt catatttaat agttaacact atcaaagatc
      721 atgagtctaa ttcaataata gtaataaagt gaatgcttgt tttgctattg actgtcacat
      781 caatcaatta ttcagaaaga agtttataaa aaggtctaaa taagaattac aagaatttta
      841 cgcatgcgtt cccaggctat aaaaagatgc atcaatgcat catgtggttt cacttatgaa
      901 atcaataatg atatatacag gtgtacttgt ggttctcttc ttgatataat atatggtgag
      961 cgtccgtcaa ggagtcttat tgacaccttt tacgagcgaa gaaaccacgg ggggaacatc
     1021 tataatgaaa gtggtgtttg gcgttttcgt gaattaataa atttttacgc aattgatatt
     1081 gaaaatttca atgagtgtgc aagggtgctt gtttccttag atggtgcaga aggaagacta
     1141 tcaagaccct atcaaatgag caaagtagcc gattatgcag atatgaaaca cgattctttc
     1201 atgctgcagc cagaagggta taatccaagc ggatctttca aagataatgg catgtcgaca
     1261 gctgttactc atgccaaaat gttgaaggtc aaaaaattaa tttgtgcatc tacaggtaat
     1321 acatctgctt ctgcagcgat gtatgcggca aatgaaaaca tggaatgcga tgtctatatt
     1381 ccaaagggag aagttgctcc tggaaaattg ggtcaggcat ttcaattcgg agctcaagtt
     1441 atacaagttg atggcaattt tgatgatgct ttgtcgagct ctttaaaaga tgcaaaagaa
     1501 ttttcagcat atacggttaa ttccgtcaat ccatttcgtc tcgaaggaca aaagacaatt
     1561 gtttacagag taatggaata tctaaattgg aatcctccag attggattgt ttatcctggt
     1621 ggcgcgctag gtaatacctc tagttgtgga aaggccttta tggaactgta ccagtggggt
     1681 tggatcaaaa agattcctca tatcgcggta gtaaattctg aaggtgcaaa cacattctat
     1741 gagctgacaa acggtgtttt tgaaagcaag aagcttaatt ggaataatgg aagacccgac
     1801 ttggggatga ttgaacggta ttatactgtc aagcataagg aaggcattgt tccaaaaact
     1861 caggctacgg caattcaaat aggaaaacct gccaatattg tgaaagcatt acgagccatt
     1921 gattttacta aaggcgtggt tatccaagtt aatgatcaag aaatgagcga cggaatgtca
     1981 gttgttggat tgaatggttt tgattgtgaa atggcatctg gtgctgttcc ggcaggagtc
     2041 cgcaagctcc gaaatgaaga tattattaaa aaagatgatg tcgttgttgg catacttact
     2101 ggaagacaga aagatcccgg attattagta acatatcaca caaacgccaa caacatgttt
     2161 tcaaggcctc caaagaataa ctgacaaaaa taaaattcat ttaatactat cgaatcttat
     2221 ccgttatttt atataaaata atccgtagca tgactgataa taattattat taaaattaaa
     2281 aatcataatt acactagata catataaaat acaatttagt tatgaataaa atgaatgaat
     2341 aacttttttt cgtaaatttc tagaatcaag aaaaaggtga ataatgtttt gtgtcagtta
     2401 ttgtaaccgt ttatatgttg agtagcgttt tttaaatttt aaaagatagg ttcgaagcaa
     2461 gtaatcaatt ttgacaaagc attcatgagt tcagttatgt attaaaggag aagtaagttt
     2521 attcggaggt agagatgttt ttgttaaaaa atatctccta attatatctg ctaatttata
     2581 tgagattacg aatagtcatc aacctctcct acttaagatt cttcattatg caaataattg
     2641 caatgtcatt tacattagta cctgtaggtc cactaactaa ggatgaacct atttttttta
     2701 aagcagtgtg gctatcgtgg ttttttaggt atttttttag attaatactc tttttctgaa
     2761 tcaaatacag agtttttgga gtcaaaaaac cgcctgctgc cagtgaatta ccatctattc
     2821 catcggttcc catagaaact atggaaatat catctctatc ctcaaagaag cactttgttg
     2881 ctgcggataa aatcgcttct tgatttcttc ctcctttacc gttctctttc ctcttattta
     2941 atttgacggt tgtttcgcct ccaagtacaa aagcaattgg aagcgatgaa atggcaagat
     3001 ctgttgttaa tttcccaagc aatcttccga aatctattgc ctgaccattg aaagaggatc
     3061 caagatgtat tacttggata ttattttttc ttagagattc aacagcgttg ttgcatgcta
     3121 atgtattatt acctattaaa aaattatata catttttgaa gatagagttt cccggctttg
     3181 gagtatcatc gatagaccct tctagaccct tctttattat agtaaatatc tttgattttt
     3241 ctaaagtttt attatcgaat atgtgatatt tccgcagtat gaatgccacg tccttaaagg
     3301 tggaagtgtc aggtactgtc ggacccgagg caattgtcgc tatatcgtct cctataacat
     3361 cggataagat caaggaaaat attgtgcatc cacttttgac aaatcttact agccgtcctc
     3421 ccttgatcaa tgataggtgc ttacgaacaa tattaatttc gtcaatggaa gctccagaag
     3481 ccaacatatt acatgtaatc tttttcttat catctaattc gagaccgctg acaggaaatg
     3541 gcataagtgc agatccacct ccagaaatta acacaaaaac taaatcagat ctgtgcgttt
     3601 ttttcagaat attaatgatt ttatttgtac cttcaactcc cgcttcgtca ggtataggat
     3661 ggttggcttc ggttatagat atagaatcaa gatgagtctt gttaccatag ggaacattta
     3721 ttgctccatg ggtaattttt ccttttaaaa tatgagaaag agcttttgcc attttagctg
     3781 ttccttttcc tgcgccta
//
LOCUS       DATAAS010000346         3041 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2001179, whole genome shotgun sequence.
ACCESSION   DATAAS010000346 DATAAS010000000
VERSION     DATAAS010000346.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3041
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2001179"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(758..1318)
                     /locus_tag="VHF08_05695"
     CDS             complement(758..1318)
                     /locus_tag="VHF08_05695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068174.1"
                     /translation="MVLNMMRIIIPLLSIRIVFSNSAYIILAAAIAIGFWILFNVFDQ
                     LLFFLPVLVFYLPHDAITGFILSNITAIIMGIVISMNVYMLKHSKLKISKSLFSGSTI
                     GILSSICASCSSLGFLLISTFGGLGIVASNFLSIYQIPLRLVSIGILVWALYSLHKKI
                     TKSCCTLNGLDSKRNNTDRMDTGKSI"
     gene            complement(1334..2041)
                     /locus_tag="VHF08_05700"
     CDS             complement(1334..2041)
                     /locus_tag="VHF08_05700"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEX2068175.1"
                     /translation="MNLDSIPCLFICIQGVILTSSSSYLGGQVLALQEQNNDNEKDKN
                     NNELSLSSLIKQGSPHLGDLSAPITIIDFSDFQCYLCARYVKETEPIIYDTYIQTGKV
                     NYVFKHLPNRGFDSMGAAIAAQCTNDQGKFWEYHKILYTNQKPIDSGWVSKDNLKKFA
                     SKITGLNMSIFNSCLDSEKYKSLVEKDLAFGSSFGFQDTPSFIIVNNDGSKPEILRGA
                     HPFPSFKALIDKKIVQK"
     gene            complement(2573..2752)
                     /locus_tag="VHF08_05705"
     CDS             complement(2573..2752)
                     /locus_tag="VHF08_05705"
                     /inference="COORDINATES: protein motif:HMM:NF018096.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1059 domain-containing protein"
                     /protein_id="HEX2068176.1"
                     /translation="MKTLACREAGFNCDYTMRGDTEDDLLRQGKEHATKEHGMTEKDF
                     TPEFIEKVKGLVREA"
BASE COUNT         1039 a          519 c          444 g         1039 t
ORIGIN      
        1 cttcctatta ttataaaata acatacaagg gaagacgttt cttagaaata tacagaggtc
       61 ttagtgaaat gatttcataa attcctccaa ctgtcttaca tacatattga agtatgagtt
      121 acatcttcct catagtaatc atatcctata ctatatacta ctactgattc aatcacctac
      181 aacgctcttt atttgctatt gtatgcttag aggttgatta aacgtgaata atgcccctcc
      241 tcctcctccc ttttcttggt tagcatcgtt atttgaagcc cacatcttgc cacccatggg
      301 cttcaattat gctttttgaa ataaaaagtc caagtccagt tcctgactgg gattttatag
      361 cgaactttga aaacagtctt ggcattattt ctaggtgtat cccagtgcca gtgtctttta
      421 cgctaacaat tataataaca tacaaacgag gtgtatctac gtcaatcagt aaaagaagct
      481 atgagacaaa aaaagattgt aaccaatgca caagtctaca tgatagtttt aagatcatat
      541 tattattaga attattctat atggtatata tgataatgaa aaataacatt agcaataaag
      601 catacaggcg gtctgtcaac agaagtaact tagattataa ctaggttact gatatgaaga
      661 aaggaatgga taggaattct acacaatttt ttcttataca caatgttata ataagagaat
      721 atgtgtgtgt atgtgtgtgt ctttttgtct aatcacatca tatgcttttg cctgtatcca
      781 ttctatcagt attatttcgt ttgctatcta agccatttag agtgcaacaa ctctttgtga
      841 tctttttatg taaggaatat agtgcccata ctagaatacc tattgatact aaacgtaacg
      901 gaatttgata tatggatagg aaatttgatg caacaatgcc taatccacca aaggtggata
      961 tgagaagaaa acccaatgag gaacagctag cacatatact tgataaaatt cctatcgttg
     1021 acccagagaa caacgattta ctaatcttca actttgaatg ttttaacatg taaacattca
     1081 tacttatcac tatccccatt attatggcag ttatatttga cagaataaat cctgtaattg
     1141 catcatgtgg taggtaaaat accaatacag gtaagaaaaa gaggagctga tcaaatacat
     1201 taaagaggat ccaaaatcct attgctatag ctgctgctag aataatataa gctgagtttg
     1261 agaatactat tctaattgat aatagcggta ttattattct catcatattc aataccatta
     1321 taaccttatc aactcacttt tgtacaattt tcttatctat taatgcttta aatgaaggaa
     1381 acggatgagc tcctcttaag atttcaggct ttgatccatc gttattgact attatgaaag
     1441 atggagtgtc ttgaaatcca aatgaagaac caaaagcaag gtctttctcc acaagggatt
     1501 tgtatttttc actatccaaa catgaattaa aaatgctcat attcaatcct gttatctttg
     1561 aagcaaattt ttttaagtta tctttactaa cccaaccaga atcaattggc ttttgatttg
     1621 tatataatat cttatggtat tcccagaact tgccttgatc atttgtacat tgagctgcaa
     1681 ttgcagcgcc catagaatca aaaccacgat taggtaaatg tttaaagaca tagttaacct
     1741 tacctgtctg gatataagtg tcataaatta ttggctctgt ttcttttaca tatctagcac
     1801 ataaataaca ttgaaaatca ctaaagtcaa ttatagtaat tggtgcagag agatcaccta
     1861 aatgaggaga tccttgtttt attagacttg aaagtgaaag ttcgttgtta ttcttatctt
     1921 tttcattatc attattttgt tcttgtagtg ctaatacttg acctccaagg taagaagaag
     1981 aagaggttaa gattacacct tggatacaga taaaaagaca aggaatactg tcaagattaa
     2041 tttagtataa ttattaattt taagtctctt actactctcc ttatttgtgt tcatagattt
     2101 tcttacacaa taaccatcta ctaacaacgc tttaaaatcc ttatcaatat gttcaataat
     2161 ctcatgattt atacttgtta tttgcctaga gaaattcggt aattatttaa actatatttc
     2221 tgttcttttt tttagttgta gttgttgttg taacggcata aaatagttcg atagcaggac
     2281 tgaaacgcca actacaatat tattattatc atcgctctac gctcttataa tattaacaac
     2341 aatacatatc tcatattttg atatacattt taaaaaaaat ggatctcgag gtaaaaagct
     2401 ttcaacgtgt gacattcaat agctaaacat acaactaaaa caaacataat accagcaact
     2461 caaataataa ttaaatttgt taataactaa tctttctttg attaacaact accacaaatt
     2521 cgccaagatg actacaacat aatccatata aaataaatta ttagcctaat aattaggctt
     2581 ctcgaactaa tccttttact ttttctatga actcaggagt aaagtccttt tcagtcatgc
     2641 catgttcttt tgttgcatgc tcttttcctt gtctcagtaa atcgtcttca gtatctcctc
     2701 tcattgtata atcgcaatta aagccagctt cacgacacgc taatgttttc ataccaacat
     2761 atcataatct atactattaa aaggttaatg agatggtcaa gttcattgat cagaataaaa
     2821 attatagtac aattcagatg ggaaaattaa agtcataaag agatattgat aatgactaaa
     2881 gagagtcaga gagatagata tgaggagtac cctctccagt acgtgttttc tcaagaatgc
     2941 ggcatatact gattagtctt ttgccaatat cttcactgat tgtatgacaa caacataaag
     3001 attatcctca tccataggga tgtcctaaat taagctactt g
//
LOCUS       DATAAS010000347         1701 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2001299, whole genome shotgun sequence.
ACCESSION   DATAAS010000347 DATAAS010000000
VERSION     DATAAS010000347.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1701)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1701)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1701
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2001299"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(433..1380)
                     /locus_tag="VHF08_05710"
     CDS             complement(433..1380)
                     /locus_tag="VHF08_05710"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2068177.1"
                     /translation="MLAIEAKQVSKIYKGSSYAALSSVSLNVEPGQIYTLLGRNGAGK
                     TTFVRICATQLMPTAGSISILGYDVVKEPGKVRNIISIVPQEGRPLRALTPWDHVYNW
                     LQIRGENKNKSKEETEKILRKLELYEARNRPAMNLSGGMKQKVLVAMAMATNAELLFL
                     DEPTIGLDPVSRRQVWSAIKDWKKEGKSILLTTHYMDEAEMLSDNIVIIDKGRIIAQG
                     IMNELRKIIPQNIRVDIAKDTVDTNLLKTYGSVVETGTNTVRVFAFDSAVKELSEFAI
                     KKNIPFTVSPITLDDVFVSLVGDGQIEQNDVNVDYNTDN"
BASE COUNT          533 a          302 c          255 g          611 t
ORIGIN      
        1 attcctatga tttcttcctt gtcgatatgc tggtccttcc attaagctta gcaaaagcta
       61 aatcgcgata taaaatagga agagtgaccg aacatctcaa gacaaatcta caaattgtaa
      121 gtcaaaaatg gttggttgca aatatcaaat tgaacctgca aaaaaagctc tgtagttaat
      181 attgaaggga ttttatctta atagataaaa atactattat cgatcactac aactagaaag
      241 atatgatata tatgatgtat atcaaaacaa taacatgact gatggaatgc tctttacttt
      301 ctattgcaaa cttacaagta gaccattatg attataattt tatcgagtat tagcaataat
      361 ttataaatat taataataat gtttatacta attggtaacg ctatttaggt tggaagaaaa
      421 atttaatagc ttttaattgt cagtattata atcaacatta acatcatttt gctctatttg
      481 tccatcccca acaagggaaa caaatacatc gtccaaggtt atgggagaaa ctgtaaaagg
      541 gatatttttt tttattgcaa attcagataa ttctttcact gcagaatcaa atgcaaatac
      601 ccttaccgta ttagttccag tctctactac tgagccatat gttttaagca ggttagtgtc
      661 aactgtatcc tttgcaatat ctactctaat attttgagga attatctttc gcaattcatt
      721 cataatacct tgggctatta tacggccctt gtctattatt acaatgttat ctgaaagcat
      781 ttcagcttca tccatataat gtgttgtcaa taaaatagac ttcccttcct ttttccaatc
      841 cttaattgct gaccacactt ggcgtcttga gactggatcc aatccaatag tgggctcgtc
      901 aagaaataac aattcagcat tagtagccat agccatcgca acaagaactt tttgcttcat
      961 gccccctgaa agattcattg caggcctatt tcttgcttca taaagttcta gcttacgtag
     1021 aattttttct gtctcttcct tagatttatt tttgttttcc cctctgattt gtaaccaatt
     1081 atatacatga tcccacggag taagggctct taatggtcta ccttcttggg gaactattga
     1141 aataatattc cttacttttc caggttcctt tactacatca tatccaagaa tacttatact
     1201 tcctgcagta ggcattagct gtgtagcgca tattcttaca aaagtggtct tgcctgcacc
     1261 atttctgcca aggagtgtat atatttgtcc aggttctaca tttaatgata cgctgctcaa
     1321 ggcagcataa cttgaaccct tatatatttt tgatacctgt tttgcctcaa ttgcaagcat
     1381 taggtgactc tatgataaca caggaataat aaaattgttg attaataaac tcatcttcac
     1441 tacgcttaat gttttataat atttatagag aatttagcat cagcagggat attgtttgaa
     1501 tatctaatga attaattatg agtaatgtac atctaagtta tctatatgtc atattatatt
     1561 gtatttgtta tttagctgct ttctattgag aaattgctct tcttatacaa gtaaattcct
     1621 ggagataacc tcttacagcc tgatttgagg actaaataca tttagtgtca gtcgcagatc
     1681 tttgtttttt gactcgataa t
//
LOCUS       DATAAS010000348         4837 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_931614, whole genome shotgun sequence.
ACCESSION   DATAAS010000348 DATAAS010000000
VERSION     DATAAS010000348.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4837)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4837)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4837
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_931614"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..684)
                     /locus_tag="VHF08_05715"
     CDS             complement(<1..684)
                     /locus_tag="VHF08_05715"
                     /inference="COORDINATES: protein motif:HMM:NF025736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEX2068178.1"
                     /translation="MLQHLAVLLSDFWPSWIIHIRSTQFLALIVFFVILTIFVMLGAT
                     AGIDNIISQYFKSIQGNENLDTLMLIVTTFGDVFSLVIIAIILTIIRRTRKTGMIFLI
                     SIVILTILVMYIKPLVDRPLPPYGFEPKLQLSKNFKIENDSLVPFARDLSYPSNHIAR
                     ATAFAFIIGFSLNEKSRTAGLLIWLFPVMIAITRLYVMQHYFTDLMGGFLLGLIVSII
                     LSNVMRLDEP"
     gene            complement(1069..1497)
                     /locus_tag="VHF08_05720"
     CDS             complement(1069..1497)
                     /locus_tag="VHF08_05720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HEX2068179.1"
                     /translation="MSDDIYREIILDHYRNPRNKGKLPHPDVSTHDSNPLCGDEIDIH
                     LKVEQGKIKDIKFEGRGCAISQASASMLTEMVLDKPLTAVKDLAKDDILENIGLMNLG
                     PARIKCALLSLRVLKMGMINYYIDKDPDSAKKIQDESKLY"
     gene            complement(1494..2741)
                     /locus_tag="VHF08_05725"
     CDS             complement(1494..2741)
                     /locus_tag="VHF08_05725"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEX2068180.1"
                     /translation="MLQERALDVFKIREDFPILKRKINGNKTLVYLDNAATTQKPISV
                     INAIVDYYMNYNSNIHRAVHQMAEEATLAFEMTRQKVAKFINASSSDEIIFTRNATEA
                     INLISYSWGRSNINKNDKIVITEIEHHSNIVPWQILAQEKGAVVEYIRVNNDGYLDMG
                     AYEEFLQSNKVKLVSISQMSNVLGTIVPIEKIINKAHSKGIPVLVDGAQSVPHMPIDV
                     QRMNCDFMVFSAHKMLGPTGVGILYVKREILDKMKPFIGGGDMIKEVRKHDIRYNDLP
                     YRFEGGTPNIADVIGFGSAIDYLNKVGMDKVREHEIDITSYAIKSITNVRGVTVYGPT
                     NPKHRGGVLSFNISDIHPHDLATIMNDHGVAIRSGHHCAQILMERLDVSATSRTSFYI
                     YNTKEEVDIFIDALDQARRLFKI"
     gene            complement(3076..4026)
                     /locus_tag="VHF08_05730"
     CDS             complement(3076..4026)
                     /locus_tag="VHF08_05730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2068181.1"
                     /translation="MKIAKLSVSQLKAYYFTINGIIRAVDGINLEIYDGESLGIAGES
                     ACGKSSLGNAFLRILPPPGKIVDGSIKLNGTDIVKLSDSDFDKKIRWKKISMVFQGAM
                     NTLDPVYTIGDQMREILEQHRFKGNSKKIILESLKQVGLDKSIVDRYPHELSGGMKQR
                     VVIAMALLLGPEIVIADEPTTALDVLVQAQIMNLLKTLKKEKGMTIILITHDIALISE
                     IADKIAIMYAGQIVEFGLSSHIYKNAKHPYTQALLSAIPKLHSTDKQMHFIKGNPPNL
                     LNLTSGCRFYSRCPHAMDICKENPPEFKTESGYVRCWLYK"
     gene            4448..>4837
                     /locus_tag="VHF08_05735"
     CDS             4448..>4837
                     /locus_tag="VHF08_05735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068182.1"
                     /translation="MKTPICSFDAKTGILCSKCEEKLRSGQLTQVDVESAVKLTKISE
                     RDQEINKFTMVNAYQVNGDTVLVLQRSDISALRSNTELARKIQAEYESKIWFVEAEAT
                     DKRFLENLFFPARILSINLIWLPDGIKL"
BASE COUNT         1557 a          869 c          811 g         1600 t
ORIGIN      
        1 aggttcatcg agtctcatta cattactcaa tattatcgaa actatcagcc ccagaagaaa
       61 tcctcccata agatcagtaa aataatgctg cattacgtat agcctagtga ttgctatcat
      121 aacaggaaac aaccagatga gtaagccagc agtccttgac ttttcattca atgaaaatcc
      181 aataataaat gcaaacgctg ttgctcgtgc tatatgatta gaaggatagg acagatcacg
      241 tgcaaatgga actagactgt cgttttctat cttaaagttt ttagataatt gcaacttagg
      301 ttcgaacccg taaggaggca atggcctatc cactaaaggc ttgatataca ttactaagat
      361 tgtaaggata acaatagata ttaaaaaaat catgccagtt tttctagttc gtcgaattat
      421 agtaagaata atcgcaatga tcactaatga aaaaacgtca ccaaacgtgg taacaattaa
      481 cattaatgta tctaaatttt cgtttccctg aatagactta aagtattggc ttatgatatt
      541 atcgatacct gctgtagctc ctaacattac gaatatagta agaataacaa aaaaaactat
      601 caaagctaga aactgagttg atctaatgtg tattatccac gatggccaaa agtcagacaa
      661 tagcactgct aaatgctgca acaataatgc atttttaatt gtttgttcat taaataaagt
      721 tagatgagtt tacgttgatg aataacatat tcagccttaa atatataaaa tgcagataaa
      781 tatcgttaag tgaaattctg actggcgatt ttgttttgaa attgatggga gaatgaaaga
      841 agcaatacta ttattccatt agagtaagct gtttatttat atatattcaa ttcaaaataa
      901 agcttcggaa caaggttaaa cctatagaga ccactgagat tatctatttt gaaattacga
      961 tcttttatct ttataccttt aatcggtcta atacttagct ttgtaaatct cgcattatta
     1021 aaaaattgat ataaagaatg atgtataacc ggtttagccc tacgcatatt aatagagttt
     1081 tgattcatcc tgtattttct ttgcagagtc aggatcttta tcgatataat agtttatcat
     1141 acccattttg aggactctta atgatagtaa agcacatttt attcttgctg gtccgagatt
     1201 cataagtcca atattttcta aaatgtcatc cttagccaga tctttgacgg cagtcaaagg
     1261 tttatccaaa accatttcgg taagcataga agcactagct tgactaattg cacatcccct
     1321 accttcgaat tttatatcct taatttttcc ctgttcaact ttcaaatgaa tgtcaatttc
     1381 atctccacat agaggattgc tatcgtgcgt actaacatct ggatgtggta atttgccctt
     1441 atttcgaggg ttcctgtaat ggtctaaaat aatttcacga tagatatcat cactcatatt
     1501 ttaaacaatc tcctagcttg atcaagtgca tcgatgaata tatcgacctc ttctttggta
     1561 ttatagatat aaaaacttgt gcgtgaggtt gctgagacat ccaatcgttc catgagtatc
     1621 tgtgcacaat gatgtccaga tcttattgcc acgccatgat cattcattat agtagcaaga
     1681 tcatgtggat gaatatcaga aatattaaac gacaatactc cgcctctatg cttaggatta
     1741 gtcggtccat agacagtgac gcctctgaca ttggttatag attttatggc atagcttgta
     1801 atatcaattt catgttcccg tactttatcc ataccaactt tattgaggta atctatcgca
     1861 gatccaaatc caattacatc tgctatgttt ggagttccgc cttcaaatct gtatggtaaa
     1921 tcattatatc taatatcatg tttacgtact tcttttatca tatctcctcc gcctataaag
     1981 ggcttcattt tatcaagtat ctcccttttt acatagagaa taccaacacc agtaggccca
     2041 agcattttgt gagcagagaa aaccatgaaa tcacaattca ttctctgaac atctatcggc
     2101 atgtgaggaa ctgattgagc tccatctaca agaactggaa ttcctttact atgggcttta
     2161 ttgataatct tctctatagg cactattgtg ccaagtacat ttgacatctg gcttattgaa
     2221 accaatttaa ctttattgct ctggagaaat tcttcatatg ctcccatatc tagataaccg
     2281 tcattgttaa ctcggatgta ctcgactaca gcaccttttt cctgagcaag aatttgccaa
     2341 ggaacaatat tgctatgatg ttcaatttca gtaattacaa tcttatcatt tttgttaata
     2401 ttggaccggc cccaagaata cgatatcaag ttaattgcct cagttgcgtt gcgtgtaaaa
     2461 attatttcat ctgatgaaga ggcattaatg aacttcgcaa ccttttgtcg cgtcatttca
     2521 aatgctagtg tggcttcttc agccatttga tggacagccc tatggatatt agaattgtaa
     2581 ttcatataat aatcaacgat tgcattaatt accgaaattg gtttttgagt agtagccgca
     2641 ttgtcaagat aaacaagtgt tttattgccg ttaatcttac gctttaatat cggaaaatct
     2701 tcccgaattt taaaaacgtc gagggctctt tcttgcaaca ttgtttaatt aaacgcccta
     2761 ttaagatata aacttagaag tgtaaagtgc ataaaggtgc gtatcaaatt agaggtagcg
     2821 gattatcact ataaaacgtc atcagatcat catatatctt ttcttgcggt aaaagtatct
     2881 tttattatta gtcgcgcagt tatatcaaaa tatcacaata taatattatt atgataatga
     2941 tagttcgtgt agattcaatt atatagacaa taaagccaag ggtatgtgat catttcatgt
     3001 tcttatatag acagtgagaa tctcaaagaa atttatgaca ttcctatgct ttttcttcgt
     3061 atatatattt caatatcatt tataaagcca gcatcttaca taaccacttt cggttttgaa
     3121 ctctggagga ttctctttac aaatatccat ggcgtgcgga caccgcgagt agaatcgaca
     3181 gccggacgtt aaattcaata ggtttggtgg attgcctttg ataaagtgca tttgcttgtc
     3241 agttgaatgt aatttaggaa tagcagatag taatgcttga gtatatggat gtttggcgtt
     3301 tttatagata tgagaggaga gtccaaattc gacaatttga cctgcataca ttattgctat
     3361 cttatcagca atctctgaaa taagagcaat atcatgcgtt ataagaatta ttgtcatacc
     3421 cttttccttt tttaatgtct ttagcagatt cattatttgg gcctgcacta gaacatctag
     3481 tgcggtggtc ggctcgtctg cgatcactat ctcaggtcca agcagaagtg ccatggctat
     3541 gactacgcgt tgtttcattc ctccactcaa ttcatgaggg tatctgtcaa cgatagactt
     3601 atccaatcca acttgtttta gagactctaa aattattttc ttagagtttc ctttgaagcg
     3661 atgttgctcc agtatctctc tcatttgatc tcctatagta taaacagggt caagtgtatt
     3721 catagcacct tggaaaacca tagaaatttt tttccagcga atttttttgt caaaatcaga
     3781 atcagatagt tttacaatat cagtaccatt caatttgata ctaccgtcca ctatcttccc
     3841 aggaggtggt aatattctta aaaaagcgtt gccaaggctg ctttttccac aagctgactc
     3901 accagcgatc cctaacgatt cgccatcgta aatttcaaga ttaattccat ctactgccct
     3961 tataataccg ttgatcgtaa aatagtatgc tttgagttgt gatacagaga gtttcgcaat
     4021 tttcagagga actcagctac caccattgtt taacattaaa gtctaataaa tcaatcatca
     4081 aaagaatttt ttatttgcaa acacgtcaat aaggatctct gtattccgat ccatcattcc
     4141 gagatcagca aagatatagt agttagattt aacatcacaa gaaattatct tctaccaaaa
     4201 actatttaac tttcatcaca tcttcgcaaa aagatctctc atgcatatga tctttgaaaa
     4261 taaagaccac atttgtatag atttacacat atctatcgga taggaattgt caaaaaagga
     4321 aagttattga ttagagatta tattttgtcg atgatgacat ataaaatctt ttaatggtaa
     4381 tgaatattca taagggggaa catcgtaatt gaatgatata tcccaagaat atagtaagtg
     4441 ataatcattg aaaactccaa tttgttcttt tgacgcaaaa actggaatac tctgctcaaa
     4501 atgcgaggag aaactgcgtt cagggcagtt gactcaagta gatgttgaat ccgctgtgaa
     4561 gctgacaaaa atatcagaac gcgaccaaga aatcaataaa tttacaatgg ttaatgctta
     4621 tcaagtaaat ggagatacgg ttttagtgtt acaaaggtcc gatataagcg ctttacgctc
     4681 aaatacagaa cttgccagaa aaattcaagc agagtatgag agcaaaattt ggtttgtcga
     4741 agcagaagct acggacaaga ggtttttaga gaatcttttt tttccggctc gaatactaag
     4801 cattaacctt atttggcttc ctgatggaat caagttg
//
LOCUS       DATAAS010000349         1716 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_382059, whole genome shotgun sequence.
ACCESSION   DATAAS010000349 DATAAS010000000
VERSION     DATAAS010000349.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1716)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1716)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1716
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_382059"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..933
                     /locus_tag="VHF08_05740"
     CDS             <1..933
                     /locus_tag="VHF08_05740"
                     /EC_number="2.5.1.108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0090560 -
                     2-(3-amino-3-carboxypropyl)histidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0017183 - protein histidyl modification to
                     diphthamide [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-(3-amino-3-carboxypropyl)histidine synthase
                     subunit 1/2"
                     /protein_id="HEX2068183.1"
                     /translation="GPEALIPKIQNSASNITEKFGIPAYVIGDTCWGSCDLNTHAADM
                     LGAEILFNIGHTVSMETFDKKVVMIDAFDDIIFDRIARKCALELKSKNYNSISLVTDS
                     QHLNQITRVKEIFEEFGYQVIIGRGKGQLNDAQVFGCEFYPVYNVQNQVDAYIFLGQS
                     AFHSASIAISTEKPTYMLDPYFDEYSEVTGIAKQLQKKAILSIYKALDAEIIGIIIGL
                     KEGQFAHIKALELKKSLEHLGKKVQLIALTDITEDRIQIFKGIDAFVQVACPRISIDN
                     HFKKPVLSVPQTLAFIKLLKKEPIDNFLKIQHWL"
BASE COUNT          624 a          255 c          264 g          573 t
ORIGIN      
        1 gggccagaag ctcttatacc gaaaattcaa aatagcgcaa gtaatatcac agaaaaattt
       61 ggtattccag cctatgttat tggcgatacg tgttggggtt catgcgatct gaatacacat
      121 gcagcagaca tgttaggagc tgaaattttg tttaatattg gccatactgt atctatggaa
      181 acatttgata agaaagtagt aatgattgat gcatttgacg atatcatttt cgatagaata
      241 gcaagaaaat gtgcattaga acttaaaagt aaaaactaca attcaatatc tttagtaact
      301 gatagccaac accttaatca aatcacacgt gtcaaagaga tatttgagga gtttggttac
      361 caggtaatta tcggtagagg aaaaggacag ctcaatgatg cacaagtttt tggctgcgag
      421 ttctatccag tatataatgt ccaaaaccaa gttgacgctt atattttctt aggtcaaagt
      481 gcgtttcatt cagcgagcat tgcaatatcc acggaaaaac caacatatat gctggatccc
      541 tatttcgacg aatattctga agttactgga atcgctaaac aactacaaaa gaaagccata
      601 ttatcgatct ataaagcatt agatgcagaa ataataggga ttataattgg attaaaagaa
      661 ggacaatttg cgcatataaa ggcgcttgaa ttaaagaaat ctcttgaaca cttaggaaag
      721 aaggtacagt taattgcatt aacagatatt actgaagatc gtatacaaat tttcaagggt
      781 atcgatgcat ttgtacaagt tgcctgtccc aggatatcta tcgataacca tttcaagaaa
      841 cctgtattat cagttcctca gacgctggct tttattaaat tgcttaaaaa agaaccaatt
      901 gataattttc taaaaatcca acactggctc taatttattg attattcgat ttagtcccat
      961 ttcagacaat atatgataat cagaagctat gaatgtaagt taaatatatt gcaatagatg
     1021 ttaaagttac ctatattgta acgctttttt ttacatatga tatctacgaa atctggtatg
     1081 cttttatatg ccacaggtag aactgattgt tatcatctag gccaattgtt gttgcagttg
     1141 tagtcgtgat gcagcgttcg tctatcatca ttattgattt tatcgaaaag aatatctaaa
     1201 catcacttta taattacagg tatatattaa aattcaatca atcaaccacg aatatctctt
     1261 catataattt ctgatccatt ttttcaaatc aatatataac ctatagattg taaaattgta
     1321 taatataata tcatcaacag tttggcatta cttacaaatc agattgatgt atagcacatg
     1381 acgcaattat gcaataaatg tttatctaca gtctactata aaattactaa gaaatgattt
     1441 tgatgtttaa aacaatgctg tctaatgtaa agtaaatatt tcatatttag ttttttcttt
     1501 gttctttttg gatttgataa atacctccac attatgaata actaattata aagatatcta
     1561 tattgaaata ttaaaaacaa gtatgcaatc atcaaaataa cataatatat ttactacgtt
     1621 atactataat cagataacat tattattatt atattgatta ctaataaatg cgggattata
     1681 aaaaatcatc tcatcatata ttgttagtag ataaag
//
LOCUS       DATAAS010000350         1725 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4161168, whole genome shotgun sequence.
ACCESSION   DATAAS010000350 DATAAS010000000
VERSION     DATAAS010000350.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1725)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1725)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1725
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4161168"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(765..1400)
                     /locus_tag="VHF08_05745"
     CDS             complement(765..1400)
                     /locus_tag="VHF08_05745"
                     /inference="COORDINATES: protein motif:HMM:NF015423.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="trimeric intracellular cation channel family
                     protein"
                     /protein_id="HEX2068184.1"
                     /translation="MSDILLSMPVLIQILDLFGTMAFAVTGAFKAIEHKSDIVGIIIL
                     STITGVAGGVIRDIIFGKFPPTVVINPLYLIVTVVTGIVIFILYPSIKIHWNLFLKFD
                     AVGLGVFTIIGASIAYNNIGLNFLTMAFAGVLTAVGGGILRDVFVNEVPLVFVKELYA
                     STSFIGVIILFVMLVMGINLYSATIPSILAVTSIRLLAMKYNWNLPRARTK"
BASE COUNT          670 a          281 c          252 g          522 t
ORIGIN      
        1 catctacacc acaaatatac tctatctctt tatgaagggt atcctcagat attacatttt
       61 tcgcaattgc tttttgcaag tctattgtat cagaatatat tgacaaatgg tcactgaata
      121 tagatatata ttgaatatat ttaaatcagt aatagctagt aaatagtaaa ctactggaag
      181 aagcaacctg accgaagaat gctaaagaaa cagcaagaga cataatcttg tgtatactca
      241 catcgtaatt aattatagtc aagaatatgc aactaaaaaa ttgtatgtat tatttaatga
      301 gcataaaaag gaacaagaaa tgacgaagac taggatccag atatacggag ttcatctgat
      361 cacttctgga gccacaacat tatataaaat ctattcaccg catcatctat taaacaaacc
      421 gagtttagct tctttcttca taaagccaaa ttagagaaaa cgcttggtag taaaggagag
      481 atgagatgag aaatcaataa caacagattt acatgctgta ggccttttta tgatgtggct
      541 atatatgaaa ataaaattcc ggaatgttac cttgaataca tataaatttt taactgaacc
      601 gaatctacca ttgtatttta tacaaattcg ataatcagtc attatcattg aaacaaggag
      661 atgtaatata cgatatagga taactttctt gatatctatc aaaagttttg caacagatat
      721 tgtaaaagat taagatattc tgataaatat caaattcaag tcccttattt ggttcttgct
      781 cttggtaaat tccaattata tttcatcgca agaagacgaa ttgatgttac tgctagtatt
      841 gatggtatag tggctgaata caagttaata cccatgacta gcatgacaaa aagtattatg
      901 actccaataa aacttgtaga agcatatagc tctttaacaa aaacgagtgg tacttcgttt
      961 acaaatacat cccgcaatat gccaccgcca actgcagtta aaacccctgc aaaggccatt
     1021 gtaagaaagt tcaatccaat attattgtaa gcaatgctgg ccccaatgat agtaaatact
     1081 cctaaaccaa ctgcatcaaa tttcaaaaat aaattccagt gtattttaat agatggataa
     1141 agaataaaaa taacaattcc agtaactacg gtcactatca gatatagcgg attaataaca
     1201 acagtgggcg ggaactttcc aaaaattata tcgcgtatca ctcctccagc aactccagta
     1261 atagtagaaa gaataatgat tcctacaatg tcggatttat gttcaatcgc tttgaatgca
     1321 ccagtgacag caaaagccat agtaccaaac aaatctaaaa tttgaattaa tactggcata
     1381 gatagtaata tatctgacaa ttcaagttaa attataaaac ccctaatatt aaattcagtt
     1441 tcaagaaatt gatatgatat gataaagagt agaagaatat ttcccactat caattcttag
     1501 cattatacct atatgcttcc gccgccaagt ttgtcttttt tatttatttt ggtatattat
     1561 tgtgcaataa agtattacaa aacaaataga attatctaga aaaacatcat aataaaatca
     1621 actacgattg cgtaacatac ataatcaaaa gaaagatatc tttatgcagt tgtagaacaa
     1681 ataaaaaagc aaatttcaaa tgatcctttg aatggtcaat gataa
//
LOCUS       DATAAS010000351         2287 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1588034, whole genome shotgun sequence.
ACCESSION   DATAAS010000351 DATAAS010000000
VERSION     DATAAS010000351.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2287
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1588034"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            530..1585
                     /locus_tag="VHF08_05750"
     CDS             530..1585
                     /locus_tag="VHF08_05750"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEX2068185.1"
                     /translation="MVVEEERLVSHEIHLKQRPIGMPTESNFELVKVNVSDLKDGEFL
                     VRNIWMSVDPYMRGRMKETKSYIPSFQLGKPLEGGCIGQIIKSKNNQFVLGEYVLGNF
                     GWREYWISNDSNDVMKIDPNRAPIQWYLGILGMTGLTAYVGLLKIGELKDDDNNNTIF
                     VSAASGAVGSVACQIAKIKGFRVVGSAGSQEKVKWLLDQAVIDYAFNYKEVGENNISS
                     ELRKACPNGIDIYFDNVGGKHLEAAIDNMKVFGRIVLCGMISQYNLSSLPAGPSNLFL
                     AITNRLKLQGFIVRDHYNILNEFYADMSKWISEGNIKWNETVFEGLENAPKAFLALFK
                     GENTGKMLVKIGPDASV"
     gene            2064..>2287
                     /locus_tag="VHF08_05755"
     CDS             2064..>2287
                     /locus_tag="VHF08_05755"
                     /inference="COORDINATES: protein motif:HMM:NF018893.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1428 family protein"
                     /protein_id="HEX2068186.1"
                     /translation="MRLNKQFADIMRGHGASHSFFQLNNTEAPMDGITNIAKTVSANQ
                     DEEVWLELIFYKDRKHRDDVRAKMQNDESCG"
BASE COUNT          765 a          354 c          432 g          736 t
ORIGIN      
        1 agctgaaccc ccattatcag caatattcaa atccctccgc gtcctttcca tcataacttc
       61 atagttttta taaaatatta cattttatta gatctaatag taaataacaa gaaactatag
      121 tcttgaatta accacaatta ttacaataaa gaacaaacat ccgataactc catgcctcca
      181 tctgaaggat aataagatgc cacatttcct acaggttcgg acgtactgga ggtaacttta
      241 gtaatttgta tgacctagag agatagaaaa agaatttgaa aatgcataag cttttctttc
      301 taggagtatg tgtatattaa tacataatat tagttgatat ttcatacatt tcagtattag
      361 gataacctag aaaaatagta ccattgttat cataatcatt gtctgaaatt gatatatgat
      421 gcatcatcaa ttgaacgttg gccggtttgt cattacgtat ataatattat tcaatacatg
      481 ctcggtaatt tgatatatgt tttccttcat ttatttaatg aaaatatata tggtagtaga
      541 agaagaaaga cttgttagcc atgagattca tttaaagcaa cgtccaatag gaatgcctac
      601 tgaaagtaac tttgagcttg ttaaagtaaa tgtttcagat ctaaaagacg gtgaattctt
      661 ggtacgtaac atatggatgt cagtagatcc ctatatgcgt ggacgtatga aagaaactaa
      721 aagctatata ccttcatttc aattaggaaa acctcttgaa ggtggatgca taggtcaaat
      781 tataaaatct aaaaacaatc aatttgtatt aggtgaatat gttctaggaa attttggttg
      841 gagggaatat tggatctcta atgatagtaa cgacgttatg aagattgacc caaatagggc
      901 accaatccaa tggtatctgg gcatattggg tatgacaggt cttacggctt atgttggact
      961 tttaaagatt ggtgaattaa aggacgatga taataataat actatatttg tctctgcagc
     1021 atcaggagca gtaggttctg tagcatgcca gatagcaaag ataaagggct ttcgtgttgt
     1081 aggaagtgct ggctcacaag aaaaggtaaa gtggctactt gatcaagctg taatagatta
     1141 tgcttttaac tacaaagagg taggagaaaa taacatttca tctgagttac gaaaggcttg
     1201 cccaaatgga attgatatct attttgataa tgttggtgga aagcatttag aggcagccat
     1261 tgataatatg aaagtatttg gtagaattgt actttgtgga atgatatcac agtataatct
     1321 ctcctctctt cctgcaggac cttctaatct ctttttagct ataactaatc gtcttaagct
     1381 tcagggattt attgttagag atcattacaa tattctaaat gagttttatg ctgatatgtc
     1441 aaaatggatt agtgaaggaa atataaaatg gaatgaaacg gtgtttgaag gtttagaaaa
     1501 tgcacctaaa gctttcttgg cgctatttaa aggagaaaac actggcaaaa tgcttgttaa
     1561 gattggacct gatgcatcag tataaataat tttataaaat actactcaca catgtaataa
     1621 ggtaatattt attagatcct ttgagaatcc ttttgacgct ttttgggatt ttatattaca
     1681 ggaggttcag atattgtgga gtgacttcct gtatgtaagg ggagcaaact aattcacata
     1741 agaaatttat gctattgtat catcttcact gctttgttaa aggatcattg atccacttag
     1801 tccttagtat actaactata ttctatattg ataccttcaa tattctatat tataaggctc
     1861 acacctttgt cgttgctagt tgaattcttt tcttgacctt tgatgtatcg caactatact
     1921 tttactccct tgcatatttt taaactacac tctttatagt attgctcatg agtaaatcaa
     1981 atatagcaga actagaggaa ttgattggaa gtgaggtcga tcaattcatc taccgggtac
     2041 caaaaaagaa ccatgacgca gtgatgcggc tcaataaaca atttgctgac ataatgaggg
     2101 gacatggggc ttcgcattca ttcttccagc taaacaatac agaggcaccc atggatggaa
     2161 ttaccaacat cgccaaaact gtctcagcca accaagacga ggaggtttgg ctagagctaa
     2221 ttttctataa agatcgtaaa caccgggatg acgtccgtgc gaagatgcaa aatgatgaaa
     2281 gttgtgg
//
LOCUS       DATAAS010000352         2128 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_383642, whole genome shotgun sequence.
ACCESSION   DATAAS010000352 DATAAS010000000
VERSION     DATAAS010000352.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2128
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_383642"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            424..1353
                     /locus_tag="VHF08_05760"
     CDS             424..1353
                     /locus_tag="VHF08_05760"
                     /inference="COORDINATES: protein motif:HMM:NF012933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0008534 - oxidized purine nucleobase
                     lesion DNA N-glycosylase activity [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA glycosylase"
                     /protein_id="HEX2068187.1"
                     /translation="MSSLYLNQEILNLEISINSGQMFLWKRIDNAWYGIYGEYILKFS
                     TYAADTHKQNINNDDRFIEFYSFPDMKGWERHVFRLDDDIKYILSSFSNDTLLSDAIR
                     RYSGLRLMRQDPYQCMFSFVCASNTNIIMIRRMLNSLSRKFGRKIVVDGIEFFTFPTA
                     ADLNKATIADLRSCGLGYRAKAIKLLAESIINGGLDVKYLIQASYDDAKRELLRVYGI
                     GNKIADCILLFSLEKLEAFPIDIWITRALSNHYSWLISYNGKEKENNKNNKINYDQYL
                     TISESIRKYFGKYSGYAQQYLFYYMRQSAGKKW"
BASE COUNT          788 a          311 c          330 g          699 t
ORIGIN      
        1 ttttatcgaa tcaactttat ctattattta tagtaaattg tatacaacat tcccaatttc
       61 aatcgaattt gatatcattt ccttgccaaa ataaaatcaa gttaaaaatg ttagcagaga
      121 atatcatacc tataaattag atgatttcta ttttgtttat agctcattga tcataaaaaa
      181 tactgatcca tataaaatga aaaagtgcgt atcttgcaaa agagatatag ctcttagtga
      241 aaagtacttt acctatccat tatctttaca acaagtttgc ttgtcatgcg ccaagaatca
      301 aatcccaaaa accattgata gcttaaagaa tgatttaaaa aaaatagaag aagaacaaac
      361 taaagaagtt caataaagaa tatgagtaag gagttcataa ggaaactata gttgttaaag
      421 cctttgtctt ctttatacct caaccaagaa atcctcaatc tagagatcag cataaatagc
      481 ggacagatgt tcttgtggaa aagaattgac aatgcgtggt acggtatata tggagaatat
      541 attctcaaat tttctacata tgctgcagat actcataaac aaaatataaa caacgacgat
      601 agattcatcg aattttactc ctttccagat atgaaaggat gggaacgaca tgttttcaga
      661 ttggatgatg atattaaata tattttatct agtttttcaa atgacactct tctatctgat
      721 gcaataagaa gatattcagg gctgcgtctg atgcgtcagg atccttatca gtgtatgttt
      781 tcttttgtat gtgctagtaa tactaatatc ataatgattc gcagaatgct aaacagcctt
      841 tcaagaaaat ttggtagaaa aatagtagtt gatgggatag aattttttac gtttcctact
      901 gccgctgacc taaacaaagc aacaatcgca gacttgcgtt catgtggcct tggatataga
      961 gcaaaagcaa ttaaactgct cgctgagagt attatcaatg gaggccttga tgttaaatat
     1021 ctaatacaag ctagctatga cgatgcaaaa agagaattgt taagagtata tggcataggt
     1081 aataaaattg ctgattgtat attattattc tctctagaga agcttgaggc ttttcctata
     1141 gatatctgga ttacaagagc actttccaac cattatagtt ggcttataag ttacaatgga
     1201 aaagaaaagg aaaataataa gaacaacaaa ataaactatg accaatatct aacaatctca
     1261 gaatctatta ggaaatattt tgggaaatat tctggctacg ctcagcagta tcttttttat
     1321 tatatgcgac aaagtgcagg caaaaaatgg taatatacta caaatacaag acgatatctt
     1381 atatcaaata gagaattttt aaaatttatc ttataatggc aatattgatt gtagtttctc
     1441 tgcaatgcat catttaccat gctgtattcg aggatagaat ggttcgcatt tctctcacat
     1501 aaattaaata catgagctca attataaaag agtctgaaga ctcttgtagg aaaggcaggt
     1561 ttttaaagaa catacatgca cttgataggt ttcaagaatt gagagatttt tggattaaat
     1621 gtttcgttaa tatacaccaa aaaatactat attattctat tgatttatct attaaatata
     1681 catcttccaa caaacttggc attttagaag atactcttac tataataatc taataattga
     1741 tttatagttt aacattaggt ctaaatatta tctaacctgt ttgagtaact atagtaatcc
     1801 ataatttttt tgatttgttg tagctttata acaacaacaa atgataataa attatcctta
     1861 aaaaggacca aggaatagta tatcaatatc aagactataa gtaattagca aagaaagtac
     1921 atcactaatg atttacgaat acagtattaa ttcaaagaca gtaagattag agtattaatg
     1981 ccccgtccat atttaaggca attataatca tcaagccggc gcaaagccat gatagtaagg
     2041 tatctgtgta tattcttctt cttttgaaat tatctctgtt aatgaaatta aatggccatc
     2101 aggatctttt ataatagcat gttttcca
//
LOCUS       DATAAS010000353         3718 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2549534, whole genome shotgun sequence.
ACCESSION   DATAAS010000353 DATAAS010000000
VERSION     DATAAS010000353.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3718)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3718)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3718
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2549534"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            380..1255
                     /locus_tag="VHF08_05765"
     CDS             380..1255
                     /locus_tag="VHF08_05765"
                     /inference="COORDINATES: protein motif:HMM:NF024637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HEX2068188.1"
                     /translation="MSERNNLREKKLRGSGGYAFANITDEEQKKGNLGGPELFLAGVG
                     RLNEDRFSKYYCNKCEKEYEGSPAISYENPNEELGEDVILIEKGEYKCSSCNNIIAQY
                     RKFNTPATQTSVNTTNTSKQIGPSEDNRHDQPSSSIASQQQQISPASSNTSMSNTPPK
                     TQTFETKGGGFTSIQSLVGMPAYNSEAMLIGRVVEIGLRRLQGRNMQISIKIANENNE
                     GNNNSNNQPIEVSWDNISKIGDIILVGRTEVIPTSNSETVAAVTNRSGNKCSSCGYQN
                     QDDAIFCEECGNKLV"
     gene            complement(1279..3399)
                     /locus_tag="VHF08_05770"
     CDS             complement(1279..3399)
                     /locus_tag="VHF08_05770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HEX2068189.1"
                     /translation="MSSSSNDSNDIFLSPRSIAVIGASEKQGVGKAIFSNIKNGYKGK
                     IYPITPSNPTVFGLQAYKSVLDISEDIDLAIVATPNRIVPSVMEEVGKKKIKGAIIVS
                     AGFKEVDDQGRKLEEEVGAIGRKFGTRIIGPNCLGIMSLSERNMMNATFLKITPKHGG
                     IALVSQSGAICAATVEDAIAQGIGFSKVISMGNKVDMDENDVLELLSGDIDTKVIVMY
                     LEDIHNGRRFMEIAKRITKDGKPIIVLKAGRTPEGAKAAMSHTGALMGSDEIYDALFT
                     QSGVIRVDTMQELFELSTAFSKQPIPLQKGGVVIVSNAGGPAIISTDACSKYGIKMAD
                     ISASSDTIAKVIPPHGSARNPVDIVGDADFIRFEKVLDEVLSNKNVDSIVTMCTPSAT
                     LDYNDLARTIVNKSKGSDKTMFAALMGLAEGNENKQILSDGGIPHFMYAEQAIRSLEA
                     MYRFRNWLTSPKGEPKLFKTDTQRVKELFVNVLRQGRTNLLEEEGYEVLTSYGFPTPK
                     SILGTNENECVKAAQEIGYPVVMKISSQDIIHKSDAGGVKVGVKNDDEVKAVFNTIMS
                     NAKKYNENAMIKGVLVQEMVKSAKEIILGSKQDPLFGPVIMFGLGGIYVELLKDVVFR
                     IAPIDEQEAIRMVQSIKAIKILKGVRGEKPSDLNAIVDSLQRLSQLVNDFPEIEEFDM
                     NPLLVLEEGKGARAVDVRIGLRKR"
BASE COUNT         1188 a          710 c          623 g         1197 t
ORIGIN      
        1 gtataatacc gctaagcact aacactgcaa ttgcgacatt atttataata ataataaaca
       61 tcatttcagc atataatgga gatattattc catagataga tttgggtgtg catttgtagg
      121 atttatctct tgttgagatg ccttatttat tacatagaac taaaagggat aacttaaaac
      181 tatttactgt gaatccacta cagtgatcta tgatgtcgta gaatagtcat atgtaacgtg
      241 tagcattgac tagttgtcaa taactaagtg cagtttataa ttatcatatt tctttgttag
      301 aaacactatc tatcagactt ctatttatcc caaaacacta ataccagtgg tttgtgcaat
      361 taaattgtta aaataaataa tgagtgaaag aaataattta cgcgaaaaga aattgcgagg
      421 ttctggtgga tatgcttttg cgaatataac agatgaggaa cagaaaaaag ggaatctagg
      481 agggcctgaa ttatttctcg ctggagtagg taggttaaat gaggacaggt tttcaaaata
      541 ttactgtaac aaatgtgaaa aggaatatga aggatctcct gcaataagtt atgaaaatcc
      601 aaacgaagaa ctcggagagg atgttattct tatcgaaaaa ggtgaatata agtgcagtag
      661 ttgcaacaat attatagcac aatatcgtaa attcaatact cctgccaccc agactagtgt
      721 aaacactaca aatacgtcaa agcaaatagg gccatctgag gataatagac atgaccaacc
      781 ttcttcttct atagcttcac aacaacagca gatatctcct gcttcgagca acacatcaat
      841 gagtaatact ccccctaaaa ctcaaacatt tgaaactaaa ggaggaggat ttacttctat
      901 tcaatcactt gttgggatgc ctgcatataa tagcgaagcg atgttaatag gaagagttgt
      961 tgaaattgga ttacgccgat tgcaaggaag aaacatgcag attagtatca aaattgcaaa
     1021 cgagaataat gaaggtaata ataatagtaa taatcaacca attgaggttt catgggataa
     1081 tatctcaaaa attggagaca taatccttgt tggaaggaca gaagtaatac caacatctaa
     1141 ttctgaaact gtcgctgctg taactaatag gtcaggtaat aagtgttcct catgtggtta
     1201 tcaaaatcaa gatgatgcta ttttttgtga agaatgtggg aacaaattag tataactgac
     1261 aaacatacac acaaaaaatt atctctttct taatcctatt cttacatcta ctgctcgggc
     1321 tccttttcct tcttctaata ccaataacgg attcatatca aattcttcaa tttcaggaaa
     1381 gtcattaacc aactgtgaaa gtcgttgaag actgtccact atagcattca aatctgatgg
     1441 tttctccccc cgaacgcctt tcaatatctt tattgccttt attgattgaa ccattcttat
     1501 tgcttcttgc tcatcaatag gtgcaattct gaaaacaaca tccttaagaa gttcaacata
     1561 aatacctcca agaccaaaca ttatgaccgg accaaataat gggtcttgtt ttgatccaag
     1621 aattatttcc tttgcagatt ttaccatttc ctgcacaaga actcccttga tcattgcatt
     1681 ttcgttgtat ttcttggcat tggacattat tgtattaaat actgctttca cctcgtcatc
     1741 gtttttcact ccaactttga ctccaccggc atctgatttg tgaattatat cttgcgaaga
     1801 tatcttcatt acaacgggat aaccgatctc ctgagcagct ttgacacatt cgttttcgtt
     1861 agtaccaaga atactctttg gagtagggaa gccatatgaa gtaagaactt cataaccctc
     1921 ttcctctaat agatttgttc taccttgcct tagaacatta acaaaaagtt cctttactct
     1981 ttgagtgtct gttttgaaca attttggttc gccttttgga ctcgtcaacc aatttctgaa
     2041 acgatacatt gcttcaaggc ttcttattgc ctgttcggcg tacataaaat gtggtattcc
     2101 tccatcggat agaatttgtt tgttttcatt accctctgca agtcccatca atgcggcaaa
     2161 cattgttttg tccgagcctt ttgacttgtt aacaatagtc cttgctagat cattgtagtc
     2221 cagagtggct gatggagtac acattgttac tattgagtcg acattcttat ttgataacac
     2281 ctcatcaagt actttttcaa agcggataaa gtctgcatca cctactatat ctacgggatt
     2341 tcttgcagat ccatggggtg gaattacctt agcaatagta tcgcttgatg cagatatatc
     2401 agccattttg atgccatatt ttgaacatgc atcagtagaa ataatagcag gtccgccagc
     2461 atttgatact ataacaactc ctcctttctg tagaggtata ggctgtttag aaaaggctgt
     2521 agaaagctca aataactctt gcatagtatc tactctaatt actcccgact gagtaaatag
     2581 agcatcataa atttcgtcag atcccatcaa tgctcctgta tgcgacatag cagccttggc
     2641 accttctggc gttctacctg ctttcaatac tatgatcggt tttccgtcct tcgtaattct
     2701 tttagcaatt tccataaatc ttctgccatt atgtatatct tcgagataca tcacgataac
     2761 cttggtatct atatctccag acaataattc cagaacatca ttttcatcca tgtctacttt
     2821 attacccata ctgattactt ttgaaaagcc aatgccttga gctatagcgt cttctactgt
     2881 ggctgcgcag atcgcaccac tctgagaaac caaagcaatt ccaccatgtt ttggtgtaat
     2941 ttttaaaaag gtcgcattca tcatatttct ttcagataag ctcatgattc caagacagtt
     3001 tggacctatg atccttgtgc caaactttct tccaattgct ccaacctctt cttcaagctt
     3061 tctaccttga tcgtcgactt ctttgaatcc tgcggaaaca ataattgcac ctttaatttt
     3121 tttcttgcca acttcttcca ttacagaagg tactattctg tttggagttg caactatggc
     3181 aagatcaata tcttcagaaa tatcaagaac acttttgtaa gcttgcagtc caaaaactgt
     3241 aggattagaa ggagtaattg gatagatttt tcccttgtat ccatttttga tgttagaaaa
     3301 gatcgccttg ccaactcctt gcttttctga ggctccaata acagcaatag atcggggaga
     3361 aagaaagata tcatttgagt cgtttgacga cgacgacata tataaaataa aattaagaca
     3421 tgataagtta taaatgcatc ctattaatga aaaactaatc tttaatacta atttgtctat
     3481 aattaatcat tattgagcat attagtgatt aagagaggaa tacgttgaga ttcttctata
     3541 ataacatcaa gaatagattt acaaaataaa cactgacagc tattacgttt taaactaact
     3601 ttgcagcaaa aaggttttca ggtataaaat atacgagcaa caacgacagc aaaggaaagg
     3661 aataagctgg aatacaaacc ttcccaagct tttgtcgtta tttcaggtta tgtgtaag
//
LOCUS       DATAAS010000354         2572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_386309, whole genome shotgun sequence.
ACCESSION   DATAAS010000354 DATAAS010000000
VERSION     DATAAS010000354.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2572
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_386309"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            354..1160
                     /locus_tag="VHF08_05775"
     CDS             354..1160
                     /locus_tag="VHF08_05775"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEX2068190.1"
                     /translation="MNLVLNPTEINQLLDKDRSNLLIVDARPFSDYAKGHIPGAINIE
                     LVQFHWIDTSKTGILEFNRQMKILLSNIGIKKDKFVLFYDDISGASAARGVWLLLYFS
                     HNKVAMLDGGFDRWKKEGYEIETKSNALVHTNFQNRPNRKLLADFKQIKSAIKKKKSS
                     SAIIIVDSRSKSEYDGSTVRAARAGHIPSAINIDWNYNIENNIFKDPTQLEKLYQHIP
                     KDAEVITYCQGGYRAANSFVALKMIGYKNVKMYLGSWGEWGNRLDLPVEK"
     gene            complement(1420..1701)
                     /locus_tag="VHF08_05780"
     CDS             complement(1420..1701)
                     /locus_tag="VHF08_05780"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068191.1"
                     /translation="MPTTMTSVSPVDGQITLSFRILTGDEKNRKEDAKATFQYKYYPE
                     DDHIEYIDTIYTHPKLQSMIEDSQTMMENVDFYIRRSLMANTMNLSKHR"
BASE COUNT          940 a          367 c          415 g          850 t
ORIGIN      
        1 ttttataggc ctaattatta tagcaattat cattggagta ggattgtgga tatatggaaa
       61 gatgaagtct tcctaatatg atcaataaag ataatatact ttaatttgga agataatttc
      121 ttaattccta aagaagattt ctcagatatg atgatgatga tgatgctaag gatgatgaag
      181 aaccatttgg aattactata aaaatataga taatatgcgc atttgctccc agtcaaaagg
      241 aaaataataa ggtgctagta ataatcattg ttatctgcta ttcacttgtt agtgaaaaat
      301 actagtacta ccatgtaaac attcacatac tatcaatatt acaaatattt acattgaatc
      361 ttgtcttaaa tcctactgaa ataaaccaat tacttgacaa agacagaagc aatttactta
      421 tagtggatgc taggccattt tcagattatg ctaaaggcca cattcctggc gcaattaata
      481 tagaacttgt acaatttcac tggattgata cttctaagac aggcatttta gaatttaaca
      541 gacagatgaa gattcttctc tcaaatatag ggataaaaaa agacaagttt gtactatttt
      601 atgacgatat ttccggtgca tctgcagcta gaggagtctg gctattgcta tatttttcac
      661 ataacaaagt tgcaatgctt gatggcggat tcgatagatg gaagaaagaa ggatatgaaa
      721 tagagacaaa gagcaatgca ctagtccata ctaattttca aaacaggcct aatcgcaaac
      781 tacttgccga ctttaagcag ataaaatcag caataaaaaa gaaaaaaagt agtagtgcta
      841 tcataatagt agactcacgt tcaaaatcag aatatgatgg ctctactgtt cgcgctgcta
      901 gagctggaca tataccatca gcaattaaca tagattggaa ctataatatt gaaaacaata
      961 tattcaaaga tcctactcag ttagaaaaac tatatcagca tatcccaaag gatgcagagg
     1021 ttattacata ttgtcagggt ggttataggg cagctaacag ctttgttgca ttgaaaatga
     1081 ttggatacaa aaatgttaaa atgtacttgg gttcttgggg agaatgggga aacagattag
     1141 accttcctgt cgagaaatag atagagatat accacggtat tatagaaaaa atgcctacaa
     1201 gaatgtagta agttctcata tgcatatatg taattggttg taaatgataa ctatcagttt
     1261 aattatcatt acagttgcca attaacatat atcagcaaac aaaaattaag acagatcctc
     1321 tctcctattt atactataca gaatataaaa ataaaaattc aaatatagat taggaaaatg
     1381 cccatatatt atattatata tgagaaaaat atgaagaaat tatcgatgtt tagataagtt
     1441 cattgtattt gccattaatg accttctaat atagaaatca acattttcca tcattgtttg
     1501 gctatcctca atcattgatt gtaattttgg atgagtgtat atggtatcta tatattcaat
     1561 atgatcatct tctggataat acttgtattg aaaggtagcc tttgcatcct cttttctatt
     1621 tttttcatct ccagtcagta ttctaaagct aagtgttatt tgaccatcta ctggactaac
     1681 ggaagtcatt gttgtaggca tttatcaatt caaaatgacg tgcttaacaa atgttatatg
     1741 tgttatacaa atttttttta taaattttgt aactatgaac acataatctc tcatattatg
     1801 atgtttttat aattaaaggt gtatggttat tgctaggatt tgaagtaaaa acacacatct
     1861 tataaaagga tatccatttt tattattaat aactaatatt aataaaaata tatttctata
     1921 ataattaaaa tgtgttcttc tttattaact atacaattat gatttagttt atctttcctg
     1981 aagttaaaga tgcagtcttg attagttaat aacatttaac ttaattctat agacgataag
     2041 acaacaacaa caaagtaatt ctaaaaacaa atgaggaata gatgatacaa gattatattg
     2101 tatactattg agatatctca accagtcagc ctctcggtct aggaaaaaag agttatcatt
     2161 ggagataata taggtgtgcg cctgacatca tgatgtacac atctattcat caattacact
     2221 acgataacct tttactacac atagtgtata tttcatcatg gaaaagagta tctgttacct
     2281 atgcaattcg acaacattcg taaagatatg tcctacatgt agcaggcctg cctgtaaaag
     2341 ctgtatgaag agctttccgt tctctgctaa tgtatgttta gaatgtgcag cttgagtcaa
     2401 gactggcttg gcaggtatac gaaaggatga ggaaatattt tagcacttgc catgatattc
     2461 caataataat aacaatataa taattacgga aaagaattag ccattctata tttttaaatt
     2521 ttttagtatg acaaatactt gtatagagta tgcttgacat agaggataca ta
//
LOCUS       DATAAS010000355         3274 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2552999, whole genome shotgun sequence.
ACCESSION   DATAAS010000355 DATAAS010000000
VERSION     DATAAS010000355.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3274)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3274)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3274
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2552999"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            584..1399
                     /locus_tag="VHF08_05785"
     CDS             584..1399
                     /locus_tag="VHF08_05785"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEX2068192.1"
                     /translation="MTSHTLIIGDSAFMPEIDSGSIHFVVTSPPYWNLKKYGETTLGT
                     NQAYAKYLYEIHRVFKQVKRVMAPGRFVAINIGTAVSNIGMKPINADIVKMMEDLSFT
                     FKKEIIWIKPKGTQGLWQRGVTKFLKCEPYPCFFNLNIMHEYILIFQNEGQMRINLEP
                     ENRLSEEFIKQVSWSVWDMRVSYTKGHPAPFPEMLPERLIKLYTVQGDVVLDPFGGSG
                     TTMKVARDLKRNSVIYEVNAKYMELIKNNVGWNNATLNSGVKYEIKVRKPVTN"
     gene            1365..2561
                     /locus_tag="VHF08_05790"
     CDS             1365..2561
                     /locus_tag="VHF08_05790"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006306 - DNA methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA methyltransferase"
                     /protein_id="HEX2068193.1"
                     /translation="MKLKSENLSQTELAKIKNLYTLDWELEDADTRYYTHGYHPFSAK
                     YIPQIPYRLVSKFTKKNELVLDNFMGSGTTLVESKLLGRNAIGIDVNPLACLISKVKT
                     TTIQKPTLVEISKILILLKEDIINLRGNTVLFNHSEKRQTIDNSMSKTLLLHLHPNIS
                     KWYHQNVIYELLAIKSRIDTAENKDVKDFLLVSLSSILRSVSNATSGFGNLMINKQAP
                     PKTRIYEKFVLAVRDMLKNMSEFNKAATNSNIRIVNHDSRRLEFINDETIDFICTHPP
                     YMAAIPYAEYQKLSLWWLGFSQYELEKRLIGGRRSRADTPDRFFHDIHMALMEMKRIL
                     RKKKYCCIIIGNPVYNGKIWKLNDFIRKDATDIGFILLTEINRGRYRSTMGKMKEEFI
                     LIFRNG"
     gene            complement(2739..2876)
                     /locus_tag="VHF08_05795"
     CDS             complement(2739..2876)
                     /locus_tag="VHF08_05795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068194.1"
                     /translation="MKISTFKDRLEDYRESCERKRLELEKLKKEKESIEESLRLGDIV
                     E"
     gene            complement(2857..2988)
                     /locus_tag="VHF08_05800"
     CDS             complement(2857..2988)
                     /locus_tag="VHF08_05800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068195.1"
                     /translation="METERREIEKEIREMAAQLHRMKVEKEKYENALFLLKSENIDL"
     gene            complement(3003..>3274)
                     /locus_tag="VHF08_05805"
     CDS             complement(3003..>3274)
                     /locus_tag="VHF08_05805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068196.1"
                     /translation="KNPIEVAIELKLSEEEVTQFYKGFLKLKGLYKFGIIYEEHKGRI
                     PRLLKLCSEAKKEGVSIGQLVKLAKLADENILLDYHNLKNYVNGI"
BASE COUNT         1125 a          518 c          558 g         1073 t
ORIGIN      
        1 attaattata aggaaaagaa gcacttcttc atcctcttta aattcccaag aggttacaat
       61 gaagaaagca tgatatatac acctttattg ataattacag gctattattc aagcgtacat
      121 ctctatctat atatatggag atgatcgcaa atatagcaag ttcagttctc agttcttaat
      181 tatgtccgaa ttgtttaaaa ttcgatttgg gggatgaggt taccctgtat agaagggtcg
      241 taagaatttt caatgatcgc catcagcaat gatgacaaat tcactttgat tatacgaaga
      301 ggagatactg caatgagagc cataagttcc cggtacaaaa tgtcatttag ttacttggag
      361 ggagaattga aatcttgtta caaatagtag caatatatga gcactttgat acaaggtaat
      421 ttgactatgt aactatgtcg cattactact gtatgacata attccattta aaatttatct
      481 aacttatcta cactataaga taaaattaaa gagacaaata gacaacaata ctaatgaact
      541 ttacttttga actttaatag ctagattggt agctaattgt ataatgacaa gtcatacttt
      601 aattataggc gattctgcat ttatgccaga aattgattct ggttctattc atttcgttgt
      661 tacttctcca ccttattgga accttaaaaa atatggagaa actacattag gcactaatca
      721 agcatatgca aaatatttgt atgaaattca cagagtcttt aaacaagtaa aaagagtaat
      781 ggcgcctgga aggtttgttg caatcaacat tgggactgct gtatcaaata ttggaatgaa
      841 accaattaat gcagacatag taaagatgat ggaagatctt agttttacgt ttaagaaaga
      901 gattatttgg ataaaaccaa aaggtacaca gggattgtgg cagcgtggag taacgaaatt
      961 tctaaagtgt gagccatatc cctgtttttt taatctaaat ataatgcatg aatacattct
     1021 gatatttcaa aatgaaggtc aaatgcgaat aaaccttgag ccagaaaacc gattatccga
     1081 ggaatttatt aaacaagtat catggagtgt ctgggatatg agagtatcat atactaaagg
     1141 acatccagca ccatttcctg aaatgttgcc agagagattg ataaaattat acacagttca
     1201 aggagatgta gttcttgatc catttggtgg tagtggaaca accatgaaag tggcaaggga
     1261 tttaaaacga aattctgtga tatatgaggt taatgcaaaa tacatggagt taattaaaaa
     1321 taatgtagga tggaataatg caacacttaa ttcaggtgta aaatatgaaa ttaaagtcag
     1381 aaaacctgtc acaaactgag ttagcaaaaa tcaaaaatct ctatactttg gattgggaat
     1441 tagaagacgc agataccaga tattatacac atggatacca tccattttca gctaaatata
     1501 tccctcagat tccatatcga cttgtatcaa agtttactaa aaagaatgag cttgtattag
     1561 ataattttat gggtagtgga actactttag ttgaatcaaa acttttaggc agaaatgcaa
     1621 taggtattga tgttaatcct cttgcctgtt tgatatccaa ggtaaaaacc acaactatac
     1681 agaaacctac attggtagaa atttcaaaaa ttttaattct attgaaggaa gatattatta
     1741 acttacgtgg caatactgta ctcttcaatc atagtgagaa aaggcaaaca atagataact
     1801 ccatgagtaa gacacttctt cttcatcttc atcctaatat atcaaaatgg tatcatcaaa
     1861 atgtcattta tgaactgcta gcaataaagt caagaattga tactgcagag aataaggatg
     1921 taaaggactt tctattggtg tcactctctt ctattttacg tagtgtttct aatgcaacga
     1981 gtggatttgg aaatctgatg ataaacaagc aagcccctcc caaaactaga atatatgaga
     2041 aatttgttct tgcagttaga gatatgctga aaaacatgtc agaatttaat aaagcggcaa
     2101 ccaactctaa tataagaata gtcaatcatg atagtagaag attagagttc attaatgatg
     2161 aaacaataga ttttatttgt actcatccac catacatggc agccattcca tatgcagaat
     2221 atcaaaaatt gtcgctctgg tggctaggat ttagtcaata tgaattagag aagagattga
     2281 taggtggaag acgcagcaga gctgatactc ctgatagatt ttttcatgat atccatatgg
     2341 cattaatgga gatgaaaagg attctacgta agaaaaagta ttgttgtatt attattggca
     2401 atcctgttta taacggcaaa atttggaagt taaacgactt tataagaaaa gatgcaacag
     2461 atattggatt tatccttcta acagagatta accgtggcag ataccgatct acaatgggta
     2521 aaatgaaaga agagtttatc ctaatcttta ggaatgggta aatagcatat tcatccacgc
     2581 gcgcagacta gtagttgacc atagcattta tagataatga ataataaata ataaataatt
     2641 tttttgtttc tttacctctt agaacctctt caaatccatt catcttatct tttttcaaat
     2701 aaaggattta ggactattta gttaattaaa tgatattttt actcaacaat atcaccaagg
     2761 cgaagagatt cctctatact ttctttttct ttcttgagct tttctaactc tagtctttta
     2821 cgttcacagg attcacggta atcttcaagt cgatctttaa aggtcgatat tttcactctt
     2881 caatagaaac aatgcatttt catatttttc tttctctact ttcattctat gtagttgtgc
     2941 cgccatttca cgtatttctt tttctatttc acgtctttct gtttccattt cacgtatttc
     3001 gtttaaatgc cattgacgta gtttttcaag ttgtgatagt ccaacaggat attctcatcg
     3061 gctaatttag caagcttaac aagttgccct atgcttacac cttctttctt agcttcgctg
     3121 cataatttta gaagacgtgg aatacgacct ttgtgctctt cgtatattat accgaacttg
     3181 tataatccct ttagcttcaa aaagcccttg taaaattgtg ttacttcttc ctctgataac
     3241 tttagctcta ttgccacttc gatagggttc ttgt
//
LOCUS       DATAAS010000356         4688 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_387486, whole genome shotgun sequence.
ACCESSION   DATAAS010000356 DATAAS010000000
VERSION     DATAAS010000356.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4688)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4688)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4688
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_387486"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..204
                     /locus_tag="VHF08_05810"
     CDS             <1..204
                     /locus_tag="VHF08_05810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4443 domain-containing protein"
                     /protein_id="HEX2068197.1"
                     /translation="GKFVMPDTDYNSLKKEPYIYSLLIEKLKPEDKDIIIIGSDDKSE
                     KTAELAAKSAALLTIMNHEKHVQ"
     gene            complement(531..1703)
                     /locus_tag="VHF08_05815"
     CDS             complement(531..1703)
                     /locus_tag="VHF08_05815"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HEX2068198.1"
                     /translation="MTTAGKRIVILGSGFGGLTAANLLRKNLSLDHQIVVVDKKKFFM
                     MGLVNLWILSGIRTLEDSQIALNKLENKEITFLNDEVTTIDISKKYIKTRSNNNKLEY
                     DYLIIALGAELAAEEINGFIPNGGFNLYDAEQIPKLREEIIALRNGRIAICITNIPYK
                     CPPAPYEASLLINDILIKNGMRDSIDIDFYTPAPIALPVAGAKVSQDIVNLLNDNHIN
                     FHPLHKLKAVVDKEIIEFENGNKTNYNLLIGVPPHKVPAVIKSSGLVKEGQNWIDVDK
                     FSLKTNYENVFAIGDVTEIKVDQNAVIPKAGIFAEGQAKSVSYQIINEIANQSYNEKF
                     DGRGFCFMEIGSKKAGFLAADFYNITGPITRLDPPSEESYRKKLDFEKNRIKEWLL"
     gene            complement(1947..2231)
                     /locus_tag="VHF08_05820"
     CDS             complement(1947..2231)
                     /locus_tag="VHF08_05820"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: protein motif:HMM:NF002017.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008124 -
                     4-alpha-hydroxytetrahydrobiopterin dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006729 - tetrahydrobiopterin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HEX2068199.1"
                     /translation="MLSNEEIKQNIAELDSKWELKDGKIVKSFQFSSFMDAIGFVNDI
                     AKIAERLDHHPIITINWKTVKLSLKSFDVDAITKRDIALAKEIEKSISKR"
     gene            2475..2687
                     /locus_tag="VHF08_05825"
     CDS             2475..2687
                     /locus_tag="VHF08_05825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043231 - intracellular membrane-bounded
                     organelle [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDGSH iron-sulfur domain-containing protein"
                     /protein_id="HEX2068200.1"
                     /translation="MNFLSSMARLVRKEDRGPMEVKVGDASKWICMCGLSNNQPFCDG
                     SHKKTADEEAGKIYRYNTDGTRTEIQ"
     gene            3269..4075
                     /locus_tag="VHF08_05830"
     CDS             3269..4075
                     /locus_tag="VHF08_05830"
                     /inference="COORDINATES: protein motif:HMM:NF012730.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ion channel"
                     /protein_id="HEX2068201.1"
                     /translation="MINLLAIRIVPFNLTININIELSVTILIVASLVIILIDYLVPLS
                     ESQRLAIYFSDFIVIILLAIDFYIRLKTSKEGFKFVIKHWYEIPAMLPLLLYAAFDTP
                     TVVGAAIRSLRLVALFRLFRLYRLLSYFESSQFIFLTLFSALTIIFGSIGIYLAESGN
                     SRANINNLGEALWWAVGTVTTVAYGDVYPVTIVGKVIATLLMFAGIGILGTFISTLGA
                     KLISARLEKTPSGLVGEAKTIIKEKIDIIEKLDQKDFDALIAMIRTLRQR"
BASE COUNT         1650 a          712 c          689 g         1637 t
ORIGIN      
        1 ggtaaattcg taatgcctga tactgattac aattcattga aaaaagaacc atatatttac
       61 agtttgctga ttgaaaaact aaaaccagaa gataaggata ttataataat aggaagtgat
      121 gataaatctg agaaaacagc agaacttgct gcaaagagtg ctgcgctatt gactattatg
      181 aatcatgaga aacacgtgca gtagtttaca caatgaggag aattgacacc atattatttt
      241 atttttgttg ttgttattgt ttattattat atcattacta atatggtgtt ggtattcaaa
      301 ccatattagt aataagaaag gaggaggata aggaatatag tattttacta attttagtat
      361 ctaaagaggt tctaatatcc agctggatta ttattattat ctggctttag atcttctatg
      421 agtacgcatg ctctctatct ataaaagatg ttcttaggca aaagtatgtc ttgtggttat
      481 tatcactatt ttatgggaat attgtcagaa aatacaatat taaagaacaa ttataataac
      541 cactccttta tcctattctt ctcaaaatcg agtttctttc tatatgattc ttctgaaggt
      601 ggatcaagtc ttgtaattgg acctgttatg ttatagaaat cagcagccag aaaacctgct
      661 tttttactac ctatttccat aaaacaaaaa cctctaccat cgaacttttc attatatgac
      721 tgatttgcaa tttcattaat aatttgatag ctaacggact ttgcttgacc ttctgcaaat
      781 attcctgctt taggaataac ggcattttga tcaaccttta tttctgttac gtctcctatt
      841 gcaaaaacat tttcataatt tgttttgagg ctaaatttgt caacatcaat ccaattttgt
      901 ccctctttta ccaggccaga actttttata actgcaggaa ctttatgtgg tggaactcca
      961 attaacaaat tataatttgt cttatttcca ttttcaaatt ctattatttc tttgtctaca
     1021 actgctttta atttatgcag cggatgaaag ttaatatggt tatcattaag taagttaacg
     1081 atatcttggc ttacttttgc tccagctaca ggtaacgcaa ttggagcagg tgtatagaaa
     1141 tcaatatcaa tagaatctct cattccattt ttaattaaaa tatcgttaat aagtaaagat
     1201 gcttcatagg gagcaggtgg gcatttataa ggaatatttg ttatacagat agctatacgt
     1261 ccatttctta atgcaattat ctcttctctg agttttggaa tttgctcagc atcatagaga
     1321 ttaaaacccc cattgggtat aaatccatta atttcttctg ctgcaagttc tgcacctaat
     1381 gctattatca aataatcata ttctaattta ttattatttg atctggtttt aatatatttt
     1441 ttagagatat ctattgttgt tacttcgtcg ttcaaaaatg taatttcttt attttctagt
     1501 ttgttcaaag caatctggga gtcttctaat gttctaattc cactgagaat ccataaattt
     1561 acaagtccca tcataaaaaa tttcttttta tcaacaacta caatttgatg atctagtgaa
     1621 agattttttc gcaacaaatt agctgcagtc aatccaccaa agcctgatcc taagattaca
     1681 atacgttttc ctgctgtcgt caaataatat taacaaccta atgattaaag ctcacgtaaa
     1741 aaaagattgt tgtattttag gatattaaat ataacaatag tagaagaatt ttaagactca
     1801 tctcttatat gggatatgtc ttggaagagc ctgttagata tatacctgaa atacaggata
     1861 atatcataat acaaagtaac aataataata atataacaaa aaactaacct caagtctttt
     1921 ggagatctgc tttagccaat attttactac cttttactaa ttgatttctc tatttcctta
     1981 gcaagagcaa tatcccgttt agttattgca tcaacatcaa atgattttaa agaaagtttg
     2041 acagtcttcc agttaattgt aataattgga tgatgatcaa gtctttcagc gatctttgca
     2101 atatcattta caaatccaat agcgtccata aagctggaaa attgaaatga tttaacaatt
     2161 tttccatctt ttaattccca tttgctatct aattctgcaa tattttgttt tatctcttca
     2221 tttgataaca tatatatgct atagctagac taattaacaa ttaaaaattg ctatttgaca
     2281 acaatatcaa aagagcaatt aatacatccc aaaatacaga agaagatttc cagatgtaac
     2341 catacgtgat ttagatttga ttattcttgg aaataccaaa taaagagata cctcttctat
     2401 tccatagtta gagttgtcaa tcagtaataa aatactaaat aaggttggat tatagcaaat
     2461 ttataataaa gactatgaat ttcttatctt ccatggcaag actcgttaga aaagaagata
     2521 gaggaccgat ggaagtcaaa gtaggagatg caagtaagtg gatctgtatg tgcggattaa
     2581 gtaataatca acccttctgt gatggctcac ataaaaagac agcagatgaa gaagcaggaa
     2641 aaatttatag atataatact gatggaacca gaactgaaat tcaatagaaa taaatagaaa
     2701 agtctgatcc tacttttatt attattatta attttttagt ggcaaatact taattttcat
     2761 attttatgga atctatgaca ttaaaccaca atatatatac agtataatct acagaggaat
     2821 catctttagc aaatgacttg atatgcaaca gtccaatttg cttcaaaata caactgtagt
     2881 tgatatgcta taggattatt atatcttgag ttaaaatcga tatatttctg aaactcatcc
     2941 tcaatcataa tgagtaagcg tacaacgaat taaaacagga cccaagatag tagaagaaca
     3001 ataaagcaat ttcagactga attacttaga aaacaatgaa gttacaagtg ataaagagag
     3061 taaagtaaca agtgataaaa gattttgatg atttgattct taatactttc tgatcaagaa
     3121 ctagtcttat aatcccccaa tttattagaa gctgagttac cagggaatat gtacaaaata
     3181 aaataattga aaaattacca ataatacata ttaacataca ctctttaata taggaactac
     3241 ctaaggaaaa ttctccaatc tatcaagttt gataaactta cttgctatta gaattgttcc
     3301 ttttaattta actataaata taaacattga gttatctgta acaatactaa ttgtagcatc
     3361 attagtaata atactaattg attatttagt tccgctatca gaaagtcaaa gattagctat
     3421 ttatttctct gatttcatag tgataatttt gttagcaatt gatttctata ttagacttaa
     3481 aacctcaaaa gaaggcttca aatttgttat aaagcattgg tatgagattc cagctatgct
     3541 accattatta ctctatgctg cttttgacac tccaactgtt gttggagcgg ctatacgtag
     3601 tctgcgactt gttgcattgt ttagattgtt tagactctat agacttttat catattttga
     3661 gagcagtcaa tttatttttt taaccttatt ctcagcactt accataattt ttggttctat
     3721 aggtatttat ctagcggaat caggaaattc aagagccaac ataaataatt taggtgaagc
     3781 attatggtgg gcagtaggaa cagtaacaac tgtagcatat ggagatgttt atccagttac
     3841 tatagtaggt aaggtaatag ctacgttact aatgtttgca ggtataggca ttctaggaac
     3901 attcatatct acattagggg ctaagttgat ctctgcaaga ttagaaaaga ctccatctgg
     3961 attagtaggt gaagcaaaga caataataaa agaaaaaata gatatcattg aaaagctaga
     4021 ccagaaagac tttgatgcac ttatcgctat gattagaact cttcggcaga gatagataga
     4081 tagacaaata gagaatagat gatatattat taataatagc agtaatatag tgtataacat
     4141 tacgatgcta tcattttaga agaaattttg ctgatgcgaa ttcttattat cattaatttc
     4201 aataccgtct ttggtcacta ttactcccca tcatttgata tacataaagc cgtcacctgt
     4261 tcttgtatac tccaatcaat aggtcccaat ttctgggata tcaacttctt ttgcatttcc
     4321 actagctaag attgggattc cattcttttg tcattctatg tctaatacct ttgatctgta
     4381 atcttcgcta tcctttgtat atggattctc ctgacatatt gtcaataata aggtatataa
     4441 cctaaatata tatatcaata tatgtatata caatatatac atatattatt tctctctatt
     4501 gaatgataat aacaattatc agatctataa aggcatagat gttatcatca tagaaaagat
     4561 tgatattttc agcaagttca atcaacttaa aaaaggatca aacaacaacc atgtcaaatc
     4621 tattgctgct aagagtaaag atacacagcg ataatatcac agaaacattt tcaagagatt
     4681 ttataaat
//
LOCUS       DATAAS010000357         3375 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_389610, whole genome shotgun sequence.
ACCESSION   DATAAS010000357 DATAAS010000000
VERSION     DATAAS010000357.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3375)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3375)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3375
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_389610"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(220..1188)
                     /locus_tag="VHF08_05835"
     CDS             complement(220..1188)
                     /locus_tag="VHF08_05835"
                     /EC_number="1.2.7.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018491 - 2-oxobutyrate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0019164 - pyruvate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0047553 - 2-oxoglutarate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEX2068202.1"
                     /translation="MALKLADYKTDIHNDWCPGCGDFGILNAIQMALFDMQIPRHRTA
                     IFSGIGCSGKTPHFIHTYGIHTLHGRVLPFAQGAKLSNPELEVLAVGGDGDGLGIGAG
                     HFVGAGRRNVDMVYIIFNNGVYGLTKGQAAPTLKLGMKTKSLTQPNVNNSVNPISLAL
                     VAGFTFIARGYSYDVRHLKEIIKKAIEHKGLAFLDVLQPCPTYNDINTREWYQGLDNI
                     DPETNKQIPRTYKIEETGYDGIVHEADDINAKMAQVIQKSTEWGNKIPIGIFYQNEHI
                     PTYQERILARVPNYIENPPSKQAIKDENNKSVSGIDKLLAELKVDK"
     gene            complement(1178..3142)
                     /locus_tag="VHF08_05840"
     CDS             complement(1178..3142)
                     /locus_tag="VHF08_05840"
                     /EC_number="1.2.7.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018491 - 2-oxobutyrate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0019164 - pyruvate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0047553 - 2-oxoglutarate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     alpha"
                     /protein_id="HEX2068203.1"
                     /translation="MTISKTTNSLTWVIGGAQGSGVDSAANIFSRACAQGGLHIFGNR
                     EFYSNIKGEHSYFTVRVSEKPIRSHVDNIDILASFDAETVFRHADKVTDGGAIIYDSE
                     LVNTTIQDVPTIDEIASERISTILEKAGKPLTIQGMLDYAKDNGAQLYKISYLKVLKE
                     FAEKINDTSLSKFTRMVNVMALSASMAILNFDSEVLSNAIRHVFRAKPKVAEINISVA
                     NYAYNYSKSEFDPSKVRFNIKCRRPSAETILAQGNQSAGLGKIVAGCKFQTYYPITPA
                     SDDSEFLESNQIIEQRNGHNGSLVVLQTEDEIAAIAMAIGGALTGVRSATATSGPGFS
                     LMTEALGWAGMNEVPLVVSLYQRAGPATGLPTRHEQGDLLFAVNAGHGEFPKIVFASG
                     DIEESFYDTIKAFNFAEKYQMPVIHMLDKAIANSIMTCKIFDPYKVTLDRGQLLESVA
                     PSTETGIAGHYLRFKLSENGISPRIPLGTENGIFWNTGDEHTEEGHITEDPEMRLKMM
                     NKRMSKLDVALKEISNEDKAIAYGKDDPLMGLTIISWGSTKGAILDAMDRLSYDGKKI
                     KFVQVRLIHPFPTEVVEKMLVNTKVLVDIEMNYSSQLALLVKQNLKREIDYSIVKYNG
                     RPMSSSEIYNAIMHIINGSASRRIVLEIGT"
BASE COUNT          961 a          683 c          561 g         1170 t
ORIGIN      
        1 ctttaggtgc taagttgaat acatggacat atagatggat ggctgcatgg agtaaatggg
       61 actgatctaa tcccctttct ttattttatt tttaaattct aagtaaacta ttaataatca
      121 tcaagaaaca actcttatcg aatttatcga attgaattat aaataataaa attagtttta
      181 attgtaaata cttattccaa gtagatattt ttcaattttt catttgtcaa cttttagctc
      241 tgctaaaagc ttgtcaatac cagagacaga tttgttattc tcatctttta tagcttgttt
      301 agatggtgga ttttctatat agtttggaac tctagcaagt attctctctt gataagtcgg
      361 tatatgttca ttttgataga atatacctat aggtattttg ttgccccatt cagtcgattt
      421 ttgaattacc tgtgccattt tagcattaat gtcatctgct tcgtgtacta tgccatcata
      481 tcctgtctcc tctatcttgt atgttcgtgg gatctgctta ttcgtttcag ggtcaatatt
      541 gtccaatcct tggtaccatt ctcttgtgtt tatgtcgtta taagttggac acggttgcaa
      601 aacgtccaaa aaagcaagac ctttgtgctc aattgctttt ttgatgatct cttttaaatg
      661 tctgacatcg tatgaatatc ctcttgcaat gaatgtaaat cctgccacta aagcgagtga
      721 tattggatta acagaattat tcacattagg ctgtgtaaga gacttggttt tcatacctaa
      781 ttttaaagta ggtgcagctt gacctttcgt tagaccgtag actccattat tgaatataat
      841 ataaaccata tctacatttc ttctacccgc acctacaaaa tggccagcac caattcccaa
      901 accatcgcca tctcctccta cagcgagtac ttctagttct ggattagaca acttggcacc
      961 ttgcgcgaat ggtaaaactc tgccatgtaa tgtatgtatt ccatatgtgt ggataaagtg
     1021 cggtgtctta ccggaacaac ctatacccga aaatattgca gtgcgatgac gaggaatttg
     1081 catatcgaat aaagccattt gaatagcatt taatatgcca aaatctccac agccaggaca
     1141 ccaatcatta tgaatgtctg tcttgtagtc tgctaattta agtgccaatt tctaacacaa
     1201 ttctccttga tgcgcttcca tttattatat gcattatagc attataaatc tcacttgaag
     1261 acattggcct gccattgtat tttacaatac tatagtcaat ctcgcgcttt agattctgtt
     1321 ttacaagtaa tgccaattgc gatgaataat tcatctcaat atctaccaag actttagtat
     1381 tgactagcat tttttctacc acttccgtcg gaaatggatg tatcaatctt acctgaacga
     1441 atttgatttt ctttccatca tatgacaatc gatccattgc atctaaaatc gcacccttgg
     1501 tcgaacccca actaattatt gtcaaaccca ttaatggatc gtctttgcca taggctattg
     1561 ctttgtcttc attggatatt tcctttaaag cgacatctag tttactcatt cgtttattca
     1621 tcattttaag acgcatttcc ggatcttctg taatatgacc ctcttctgtg tgttcatctc
     1681 ctgtattcca gaatattcca ttttcagtcc caaggggtat gcggggagaa atcccatttt
     1741 cacttaactt gaatctcaaa tagtgaccag caatacctgt ctctgttgat ggagcaacac
     1801 tttctaataa ttgtcctcta tctagtgtaa ccttatacgg gtcgaatatt ttgcatgtca
     1861 ttatgctgtt tgctatggct ttgtccagca tatggatgac tggcatttga tatttttctg
     1921 caaagttgaa tgcttttatg gtgtcgtaaa aactttcttc aatatctcca gatgcaaaaa
     1981 caattttagg aaattctcca tgtcctgcat ttactgcaaa taacaaatcg ccttgttcat
     2041 gtctggttgg aaggccagta gcagggccgg cccgttgata taacgagaca accaatggaa
     2101 cttcattcat ccctgcccaa cctaatgctt ctgtcattag tgaaaagcca ggtcctgaag
     2161 ttgcggtggc tgaacggacc cccgttaaag ccccacctat tgccatagca atagcagcta
     2221 tttcatcttc agtttgaaga actactagag aaccattatg accatttctc tgctcaatta
     2281 tctgattaga ttctaagaat tcgctgtcat cacttgctgg ggttatggga taatacgttt
     2341 gaaacttgca tcctgccaca atctttccta aaccagctga ctgattacct tgagccagta
     2401 tcgtctctgc ggaagggcgc ctacatttta tattgaacct gactttagat ggatcaaatt
     2461 ctgatttact ataattataa gcataattgg ctacagagat attgatttca gcgactttgg
     2521 gttttgctcg aaaaacatgt cttattgcgt ttgagagtac ctcagaatca aaatttaaaa
     2581 ttgccattga tgctgataaa gccataacat ttaccattct tgtaaatttg ctcagagaag
     2641 tatcattgat cttttcggca aattctttta gcaccttaag atatgatatc ttgtagagct
     2701 gagctccatt atccttagca taatctagca tcccttgaat agtcagtggc ttaccagctt
     2761 tttccagtat tgtagatatt ctttcagagg caatttcatc aatagtaggg acatcttgaa
     2821 tagtcgtatt gactaactct gaatcataaa ttatggctcc gccgtctgtt actttatctg
     2881 catgtctaaa tactgtttca gcatcaaagg acgcaagtat atcaatatta tcaacatgag
     2941 atcgaatagg cttttctgat actcttaccg taaaataact gtgttcacct ttaatgttgg
     3001 agtaaaattc tcggtttcca aagatatgca agccgccctg cgcacaggct cgtgagaata
     3061 tattagctgc agagtctact ccacttcctt gagctcctcc aataacccat gttaaagaat
     3121 tagtagtttt tgatatagtc atctagattg attttcgcaa gacgagcttt taatgattta
     3181 gaaaagagaa tgttatttta attattttct tagccaccgc cagttacggc atcatatagg
     3241 caacattcac aaccatttaa ttcaccacaa tatggacata cacacataca ggcttccagt
     3301 gaattgccac aataatcaca gcgagttcca tcattgttat aatcttgttg tttaatatta
     3361 tctgacaatt taata
//
LOCUS       DATAAS010000358         3226 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4168453, whole genome shotgun sequence.
ACCESSION   DATAAS010000358 DATAAS010000000
VERSION     DATAAS010000358.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3226)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3226)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3226
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4168453"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(533..1795)
                     /locus_tag="VHF08_05845"
     CDS             complement(533..1795)
                     /locus_tag="VHF08_05845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068204.1"
                     /translation="MVLAFIGSSIGSLWMMSFFGIALPQFFHNSFQLHKTLQIDGFLI
                     LLIMGIGYMIIPRFRNIPLASTNLAYLSFVLVLCSITIYAIHQILPITENINNLLKWS
                     NLLRLTGIIIFAIIVFLALRVRPKLLRLSDYFIALSIITLIIINIVQSIGYEYNTNSL
                     THIQLWLLFPILMIYGIEYKTLPSFLGFIRPRRILGFASFGLVLVSIILSLISIMLYE
                     ENNLFPIIFNIVFLSSALTFGGAVYITGGFDNSGEIRRLIQGEKKARYNFTTIHIKLS
                     FLFLYIGITMALLFNLFNETFAFYDLAIHIIAVGFIGTTITLYLPLMLPPVIGRTIDF
                     TNFNKIPLILIILSLSIRAIGQFAFTQSSSPYLDAISSHLYQPILIILQQHFFGLSSW
                     FIVAAMFIFVIMIHRSLGKSNVSKISDR"
     gene            2383..>3226
                     /locus_tag="VHF08_05850"
     CDS             2383..>3226
                     /locus_tag="VHF08_05850"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEX2068205.1"
                     /translation="MKYYVGCSVWKNQTWVKDFYPATLEPENYLEYYSNIYDFAEVDL
                     SSGGSSVYSRFLNEFTFRKWTKNSHDNFRFTLKVPGEINDNDNGIGLGNLLEKLAPLE
                     EKILAVVIEQPRELTLKDGREWLEEILDICNYHGYSAALEFNHFSWFQDLTYNILKKH
                     NAALIWSDNRYSYHPVVTANFLYLRVTENEKKWIEKIKEKGREEADDLDFVIVVVDAP
                     TKANTILNVLNLPVGKYGYNQWIGKVIMCVDLNAFFPSCEELRDPMIVGKPHAVIMTE
                     QKENI"
BASE COUNT         1170 a          449 c          530 g         1077 t
ORIGIN      
        1 gccaggggac agagaagacg aggttaaaat tacatatgaa tggaaacaca agaaatctaa
       61 aagttaatag tgacttgtat tattatactt ctaagtatta acagacatac ataataatga
      121 caaactttgt tattccatta actgacatag tataacaaca ataagattta tgaaaggata
      181 ctagtgcata aagataatca acttccatta tatctattca aaccaatagc atttctacta
      241 gtatagaatt agtaagaaat ctagcttcat tcaaatctgg gaaaatagat aaagagtaat
      301 tgtctagatt tatttaataa taatactact gcaaaattac aaaaattatc ctatcaattc
      361 tttttgatgc tctttgaaga gtctttgtaa aatattgctt aaagaccatg tagtactaac
      421 tttggtaaat tcaagaaatg attatctatt attgcaggat aatcttattt tactttcaaa
      481 ttccttatca gacaattttg tttcttttat tcacaagtat aacagcatat ctttacctat
      541 cagagatctt agatacattg gattttccca gtgatctatg aatcattata acaaagataa
      601 acatggctgc tactataaac caacttgata gtccaaagaa gtgttgttgt agtattatta
      661 atattggctg ataaaggtga gaagaaatag catccaaata aggtgatgat gattgtgtaa
      721 aagcaaattg tcctattgca cgtatactca acgacaagat gatcaaaatt aaaggaattt
      781 tattgaaatt agtaaaatca atagtccttc caatcactgg tggaagcata agtggcaaat
      841 ataatgtgat tgtagttcca ataaatccta cagcgataat atgaatggca agatcataaa
      901 aagcaaaggt ttcattaaat aaattgaaca acaaagccat cgtaatacca atataaagaa
      961 ataaaaaaga taattttatg tggatagttg taaagttata gcgtgctttc ttttctccct
     1021 gaatgagacg ccgtatttca ccactattat caaagcctcc agtgatataa actgcaccac
     1081 caaatgtcaa tgctgaagat aaaaatacaa tgttaaaaat tattggaaat aagttatttt
     1141 cttcatacaa catgatagat ataagactta aaattataga tactaaaaca agtccaaatg
     1201 aagcaaaacc taagattctt ctaggtctaa taaatccaag gaaagacggt agagtcttgt
     1261 actctattcc atagatcatg agtattggaa aaagtagcca tagctgaata tgagttagcg
     1321 aattagtatt atactcatat ccaattgatt gaactatatt aattattatt aatgtaatta
     1381 tagagagagc tatgaagtaa tctgacaacc tcaagagctt tggtctaact cttaatgcca
     1441 agaatacgat tattgcaaag atgattatac ctgtaagcct taataaatta ctccatttta
     1501 gcagattatt aatattctct gttattggca atatctggtg aatggcatat attgttatag
     1561 aacacaatac taatacaaat gaaagatatg ccagatttgt agatgcaagt ggaatatttc
     1621 taaatcttgg tataatcata tagcctatac ccattataag caatatcaga aaaccatcga
     1681 tttgtaatgt tttatgaagc tgaaatgaat tatgaaaaaa ttgaggtaaa gctatgccaa
     1741 aaaatgacat catccataga gaaccaatag acgatcctat gaaagcaagt accactgccg
     1801 tgattatgaa cggtttgctt acatgactat aattgggatt attcggcaaa tttagattag
     1861 aaaatgtgta tgtacgttct atttatttta tagccagagt aggtcatcat cacaatgcag
     1921 ttctaaattt cctttgatag caatatcaca tcatatgttt agaatattat tggtatttgt
     1981 agttaaagat tggttatata aatatgccat atcgagtagt gtttaaaata atagactttt
     2041 ttcatatacc ctatcgtgtt cattttgttg ttgttgttct tcttcttctt tctgtttctt
     2101 ttctctatca ttgtcaaatc ttcgtctatt gattagtcat cactaatatc ccatcattag
     2161 ctgcgtattt tgcataatcc ttttttttca atcgatcata tatcaagttg tagaaatttg
     2221 ttattttaac aaaaaagtcg tgaaaagaca tggtagaaaa tgtgtcttct ttttcagaaa
     2281 ggtcatcttc gatacatata tgtaagatga caatattttt tagctaacac attttcacct
     2341 taataatata tttgttaact catggaggat taagacgata gattgaaata ttatgttggt
     2401 tgctctgttt ggaagaatca aacatgggtt aaagattttt atcctgctac cctagaacct
     2461 gaaaattacc ttgaatacta ctcgaatatt tacgattttg cagaagttga tttaagtagt
     2521 ggtggtagta gtgtctatag tagattcctc aatgaattca cttttagaaa atggacaaaa
     2581 aatagtcatg ataattttcg ttttacttta aaagtaccag gagaaattaa tgataatgat
     2641 aatggaattg gccttggaaa tcttttagaa aaacttgcac cacttgaaga gaagattctt
     2701 gccgtggtaa tagagcagcc aagagaattg actctaaaag atggccggga atggcttgaa
     2761 gagattttgg atatttgtaa ttatcatggc tattcagctg ctttagaatt taatcatttt
     2821 tcgtggttcc aggatttgac atataatatc ttaaagaagc ataatgctgc tctaatatgg
     2881 tcagataatc gatattctta tcatcctgtc gttactgcta attttctata tctaagagtt
     2941 actgaaaatg aaaagaaatg gattgaaaaa ataaaggaaa aaggaagaga agaagcagac
     3001 gatcttgact ttgtgattgt tgttgttgat gcacctacaa aagcaaatac tatattaaat
     3061 gtactaaatt tgcctgtggg aaaatatggc tataatcaat ggattggtaa ggtgataatg
     3121 tgtgttgact tgaatgcatt ttttccatct tgtgaagagc tacgagatcc aatgatagtt
     3181 ggaaaaccac atgccgtaat tatgacggag cagaaagaga atataa
//
LOCUS       DATAAS010000359         2064 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4168880, whole genome shotgun sequence.
ACCESSION   DATAAS010000359 DATAAS010000000
VERSION     DATAAS010000359.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2064)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2064)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2064
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4168880"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(528..1553)
                     /locus_tag="VHF08_05855"
     CDS             complement(528..1553)
                     /locus_tag="VHF08_05855"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEX2068206.1"
                     /translation="MDDTDGKNADASNTSDAHVVKKTSPNLINEGILAGQKIARISVI
                     TLIGIGIVELVTGQVSGSVVATADGIDSLSDAMISFIVLLGLRIAHRPADRKFHFGYH
                     KVESLAAMMAAIGMIIIGCVIFYHSYEALIHPREIKQPIFTMIVLAAAGAISLHRAFQ
                     MRVIANKYDLLSLKTDAKNSIKDGSASVIGFFSVLIASQFGFLQMDAIGGMIIAGYIF
                     SVSYISLKQSSLILVDAWQNPKVTELVKRIVEERFKHENIRVRSVLLRSSGMVAQAEV
                     HMEIDGNKPLTDVELLSIEIEMAIRSKIPTMERVSVIPHSLTLTKSESKRWSGIFSNK
                     NKVVGSK"
BASE COUNT          673 a          345 c          319 g          727 t
ORIGIN      
        1 ctatatgttt caacaattag cttgctcata atatacactg caatcactcc ggtatttatc
       61 aaattatcct tgttattata ggtaaattct atgttagata tttgctgtct attaattgtt
      121 aagttcttgt taaattttag gtataagcag aagagtttaa atgaatataa tagattttga
      181 ttattttcta tgaagaagca aaccatgctt gtacgactca gataatggca tctcctattg
      241 ctgatagaga gtaaggattt gtcagttctg atatgacagt aaagaatgtg aacagatgtg
      301 gataaaagat atttataata atctttttga ttcaggaatg caggaatgtt gcatagtgtc
      361 ttaaataaaa ttgcaaattc attgcataaa gtgtataata gttgataact cgtcgaataa
      421 caagatatct ttgactttgt tatatctgtg ctataacatc ttaaatttaa tctattaaaa
      481 gagatagcat atggagaaga tcaagagttt tttcatcttg tctgaatcta tttcgaacct
      541 actaccttat ttttgttgct aaatattccg ctccatcttt ttgattctga ttttgttaat
      601 gtaagagagt gaggaataac tgagactctt tccatcgtag gtattttgga acgaattgcc
      661 atttctattt ctattgataa taattctacg tctgttaatg gtttgttacc atcgatttcc
      721 atatgaactt ctgcttgagc aaccattcct gatgaacgca aaagtactga tctgactcta
      781 atgttttcat gtttaaatct ttcttcgaca attcttttga caagttcggt gaccttcggg
      841 ttctgccaag catctacaag aattaatgat gattgtttga gtgaaatgta ggacacagag
      901 aagatatatc ctgcgattat cataccccca atagcgtcca tttgtaaaaa tccaaattgg
      961 cttgcaatta atacactaaa aaaaccaatc actgaagctg aaccatcttt tattgaattc
     1021 ttggcatcag tttttaatga gagcaggtca tacttgtttg caataactcg catttgaaat
     1081 gctctatgta aagatatagc accagccgct gctaaaacaa tcatggtgaa aataggctgc
     1141 ttgatttctc gtggatgtat taatgcttca taagagtggt aaaatataac gcatccaatg
     1201 ataatcattc caatcgcagc catcattgct gcaagacttt caaccttgtg gtagccgaaa
     1261 tgaaatttcc tgtctgcagg gcgatgagca atacgtaaac ctaataatac gataaaagaa
     1321 atcatggcat cggatagcga gtctatgccg tctgctgtgg caactacact accactcact
     1381 tgccctgtaa caagctctac aattccaatg ccaattaaag ttataacaga gatccttgca
     1441 atcttttgac ctgctaaaat tccttcattg atcagattag gtgaagtttt tttaacaacg
     1501 tgtgcatcag atgtattcga agcgtcagca ttcttgccgt ctgtatcatc catattatag
     1561 cgttaataaa gtttaacaat tatgatattt aaactcattc tattttcaga ttacatacga
     1621 tctaacgtat atttatggaa gatttctata atagcattat taatttcaaa tttttatttg
     1681 ttatattaac ctgtacttca ctaaaattga catattgtaa gagtgccgtt agcatatacc
     1741 acatcttatt tttaatataa aaacaatatc taaatcaaaa gcagatttat gtttatagac
     1801 ctgtactcca ttcaaatccc aataagttgt agtctgcaaa cttagtaaac gtgctattct
     1861 tacatattat atttaagaca ttatattcta tctattctat aatatcaatc taaatgtctt
     1921 agaataatag caagttgtat atgaaccaaa taacggtcga aataatcatt agatggctct
     1981 gtttacttaa gcaatcactt tcttattata atagtcaaca aatagattga accaatttct
     2041 gacatgttct aacatgcact tttc
//
LOCUS       DATAAS010000360         3822 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4170619, whole genome shotgun sequence.
ACCESSION   DATAAS010000360 DATAAS010000000
VERSION     DATAAS010000360.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3822
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4170619"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..519
                     /locus_tag="VHF08_05860"
     CDS             <1..519
                     /locus_tag="VHF08_05860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HEX2068207.1"
                     /translation="IRGGSQRIVDEAERSIHDAIMAVKDVVEYPYALVGGGASEVTVA
                     QTIREWSNSLSGRAQLAAEKFADGIETIPLVLAENAGMDPLDTQVQLRAKAATAKLKY
                     GVDVHSAEITDVSAKDIYEPLAVKEHIINAATEAACMILRIDDVIAASKSKTPSGPTP
                     GYGGYGGGGMDM"
     gene            632..1315
                     /locus_tag="VHF08_05865"
     CDS             632..1315
                     /locus_tag="VHF08_05865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2068208.1"
                     /translation="MILDILGNETRRKILFELSDEPMYFNQLAKVIGIGQQSILRHMQ
                     ALEEGGFIKTYEEKSNLGGPNRKYYCLSSSFSLIISMSQDSFSVTNNQIIEKSNFNSD
                     NSNNKKHLDKLFTNSKSIPKGSVKNELASVRKNLLSIENEISDLESRLNNLQTLKQTV
                     LHRLHEIGKDNFGHLERKILYKAITAQSSMSISKLASVLNENESHVKNAVSNLQNKLG
                     KDIITKLFS"
     gene            complement(1791..2165)
                     /locus_tag="VHF08_05870"
     CDS             complement(1791..2165)
                     /locus_tag="VHF08_05870"
                     /inference="COORDINATES: protein motif:HMM:NF042831.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6766 family protein"
                     /protein_id="HEX2068209.1"
                     /translation="MRGKIKYYGYFWVTLGLFIMSISLHWTFAWYSYIQEQIAHKQPI
                     EFTDYFNQTFRDTMENWQSEFLQLIWQVAGLSILWYVGSAQSKEANDRLEEKVDLLIQ
                     KLDTENGKKLIQELDKKYPRKP"
BASE COUNT         1415 a          582 c          621 g         1204 t
ORIGIN      
        1 ataaggggtg gttcacaaag aatagtcgac gaagcagaaa gatctataca tgatgcaata
       61 atggcagtta aagacgttgt tgaatatcca tatgcattag ttggtggagg ggcatcagaa
      121 gttactgtcg ctcaaacaat aagagaatgg tcaaattcac tatcaggccg tgctcaatta
      181 gctgcagaaa aatttgctga tggtattgaa acaataccat tagtcttagc agaaaatgct
      241 ggcatggatc cacttgacac acaagtacag ctaagagcaa aagctgctac tgcaaaacta
      301 aaatatggtg ttgacgtgca tagtgccgaa attacagatg tatcagcgaa agatatctat
      361 gaaccattag ccgtaaaaga acatattatc aatgcagcga cagaggcagc gtgtatgata
      421 ttgcgtatcg acgatgtaat agcggcatca aagtccaaga cgccttctgg cccgactccc
      481 ggatatggag ggtatggcgg cggcggaatg gatatgtagg agaagaaaat ccattttgta
      541 cttttatttt ccatttatat gatatggtga gaatgacatc aaaataaaaa aagagataga
      601 cgctgataaa gtcacaaaaa taaactccaa tttgatttta gatattcttg gtaatgagac
      661 acgacgaaaa atactttttg aactttcaga tgaacctatg tattttaatc agttagcaaa
      721 agtaatagga ataggtcaac aatctatttt gcgtcacatg caagcactag aggaaggagg
      781 ctttattaaa acctatgaag aaaagagcaa tctaggagga cctaatagaa aatattattg
      841 ccttagctca tcgtttagtt taattatatc aatgtcgcaa gattctttct ctgttacgaa
      901 taatcagatc atagagaaat ccaattttaa tagtgataac agcaataaca aaaaacattt
      961 agacaaactc ttcaccaatt caaaatcaat ccctaagggt tcagtaaaaa atgagcttgc
     1021 ttcagtacga aaaaaccttc taagcattga aaatgagata tctgatttag aatcacgttt
     1081 aaataattta caaacactaa agcaaacagt tcttcatcga ctacatgaaa taggcaagga
     1141 taattttgga catttggagc gcaagatatt gtataaagct attacagctc aatcttcaat
     1201 gtctatttct aaattagcta gcgtattaaa tgaaaatgaa tcgcatgtaa agaacgcagt
     1261 tagtaattta caaaacaaat taggcaaaga catcataaca aagttgttca gttaaaatta
     1321 gcaccaggcc ctttttcttc ttcagaatgt cttgtgcctt ttgaagagaa tataatctag
     1381 gtattgttaa ttaatgaaaa aatatgaagg aagaagtaaa ataaatattg tatgttgaaa
     1441 agaaaatatt agtctacttt ctcttttgtt tcctgagctc cttcttccat tttgtctcct
     1501 gttttctttg cacccttctt catcttatct cctgcatctt ccataccctc ttttatatca
     1561 gacattgttt tattatatgg aaaatatagt ataaatagta gacatttgat aagaaaaata
     1621 tatttttcta gccaaatacc aaagccataa acagtgaact acagagtacg gttcagtttt
     1681 tggtattatc tgccttatcg tattctttat tttcgtgtca attacattcc ttaaaaaggc
     1741 aaacctattc tttatgcaaa acagtaagaa aaagtaaatt attattagat ctagggcttt
     1801 ctaggatatt ttttgtctaa ttcttgaatc aattttttac cattttctgt gtccagtttt
     1861 tggattaaca aatctacttt ctcttctagt ctatcatttg cttcctttga ctgtgcagat
     1921 cctacatacc ataatataga tagacctgct acttgccata ttaactgcaa gaattcagat
     1981 tgccagtttt ccatcgtatc tctgaatgtc tgattaaaat agtcagtaaa ctcaatgggt
     2041 tgtttatgtg caatttgctc ctgaatatat gaataccaag caaatgtcca atgcagtgat
     2101 atgctcatta taaaaagtcc tagtgtaacc caaaaatatc cataatattt gatcttgcct
     2161 ctcataaact gagtttacct cttttcatta ctagatttca ttattgtgta aactagcaat
     2221 tatgactttg taattattgg tctaactatc tcttagagaa gaataatttt gtaacagcga
     2281 ccagattatt catattagga caaatttttt attttggaag tatactttta ccatattgaa
     2341 gcattagaaa tcaactatta aaacaaatac tctgcatgct atatatgttg tatgcaaaga
     2401 aataatgctt aataataaca acaaacgatt gaattaccga tcatctaaaa tgaaactgag
     2461 gaagagatta tgaaaaatgc tacacaacat tgattggaaa ctatctataa atccggaaga
     2521 aatcaaagtt agagttaaag aaaattttca tattcattca gagatggaga caatgaaaga
     2581 ccttaaaaga ttagccttta tatttattta ggacatactt ttagaaccga tatccattat
     2641 ctccaccacc tatagtcaaa cctatctcac attctatgga gcccattttg tgtcagtaaa
     2701 aggaaaaact aaatattgac tttagacagc actttacata atctatcaca aaagctgaag
     2761 tattaagaat atttttattc atacatttgc ttctaaacac ctatgcatga tgtaataatt
     2821 atcttgagta taagagcatc tgcagaatta attgctgcaa tgtatgctag tggtcaagtt
     2881 cttatgactc ataattacaa aagatatttg tgaatagata catcttacaa tggcatagta
     2941 aactatccaa cttctaaaaa tatatgtcgt tttgaactta tgagtagatt ttgaacaatg
     3001 ataacaaatc aatgctttac tgttgtcaag cttcttgttt aagtgataaa gagcgcgtta
     3061 tgcagataga cttagcattc aagatatata tgcaatactg caggactcag aagcatatat
     3121 ctctaaaata ttaatcaaat catgtttata tttcccggaa atagttcaga taatccaaat
     3181 cattattatc attctttgct aaatagttta aagtttatga ccaaaatatg gagttggtaa
     3241 tctacataat aagtcgatcg acatagaaga aaaagaagaa gaagtaggct taataaagca
     3301 tatagtatag aattgaatgg agtattgata aagattgtat atcgtagaaa cggtagttaa
     3361 gatgaattct aattacattt ataaaagaaa acaatagtga tagaggaaac aaaactaaga
     3421 gggagaagaa taataacagt gataatgtca agataaaaca atattataca tctacaagag
     3481 ataataatca aaataatact attatagata ataataacga caattataat gaaaagacaa
     3541 aggtatttta tggcactcaa agctcaacta aagcacttgt tgaatttgta tctagagcaa
     3601 aacagaaaat agattctgtt atagattcta aagcaccatc tgttatcatt gaagttgaat
     3661 ctataagaaa agaaagattt gctactaaag atagaggagt gaaatttaga tatgttactg
     3721 aaatcacaaa agacaatctc acttattgta aagagatgct aaaattttct gagattcgcc
     3781 atttagatgg agttagaggc aactttgaag ttagtgatat aa
//
LOCUS       DATAAS010000361         3384 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4715545, whole genome shotgun sequence.
ACCESSION   DATAAS010000361 DATAAS010000000
VERSION     DATAAS010000361.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3384)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3384)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3384
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4715545"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            267..1343
                     /gene="asd"
                     /locus_tag="VHF08_05875"
     CDS             267..1343
                     /gene="asd"
                     /locus_tag="VHF08_05875"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEX2068210.1"
                     /translation="MLKVALIGSTGAVGQEFVIALNKHPWFELTCIASSERSAGKKYV
                     DALRDPNSGILRWHNKEQIPEYIHDMIVSKVEEIDAKKFDLVFTALESDDAKIIEPKF
                     AQSVPVISTAAAFRYENDVPILIPGINDNHIELLNVQRKNRGWNGFISPLPNCTTTGL
                     AITLNPILNAFGIDDVFMTSMQALSGAGRSPGVIALDIMDNVIPYIPKEEEKVQVETK
                     KILGTLNSKSIVPAPVKVSCTCTRVPVLDGHTESVFVKTKNQVEPDKVKEEMLKFSKS
                     ATEKKLPSTPKEYIIVYDDPTRPQPRIDREINDGMTTFVGRLRKDTVFDNGVKYILLS
                     HNEKMGSAKGAVLLAELLKDKEMI"
     gene            1430..1894
                     /locus_tag="VHF08_05880"
     CDS             1430..1894
                     /locus_tag="VHF08_05880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX2068211.1"
                     /translation="MGRIDDLDLKILSELSKDASISVPRLSKKININASVVYSRIKRL
                     LKRGLIKKFTIVINDEALGFGVRSLTGINMDSKLRDNVLNELFKIPEVREIAEVTGRF
                     DILVTMTARSLDEIHQLISEKVGHVEGVQKTETFIEMRKTAREIIYPTSISK"
     gene            1962..2849
                     /locus_tag="VHF08_05885"
     CDS             1962..2849
                     /locus_tag="VHF08_05885"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0048034 - heme O biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HEX2068212.1"
                     /translation="MIPQLTVGNTVRNYYELTKPKIWYLLVFTAFGAALTASLLFDIS
                     IQPLTWLLLIGGVAAGSAAADTLTGYNDRDIDAIMDRTRGRPIPSGRVSPQKALIFGL
                     ILAAISLIFSWFINIWAFALMAFGLFDNIIVYSKWLKRRSQLNIILGGFSGAAPAMIG
                     YVAVTTQNIEIGLVMAGLVFLWIPTHIWSLALHFKRDYTKAGIPMLPIVSSEKKSVRI
                     IAWTTLMMVVFSILPFFFNQFGLIYLITAGIFGVAMIGVSIWLLTKPSEKVSWIVFKF
                     SSPYLTALFIAFMVDAFFR"
BASE COUNT         1131 a          531 c          636 g         1086 t
ORIGIN      
        1 ataactttct ttgagattcc gagtggattg acatttgaac tgaagtcaat tttaaccaag
       61 ttgggattta cagaatgtac tccgccatgt gagcaggcat ttgctattgc tattttttga
      121 tcatttcctt tgcctgcgtt ggagtctatc atcactcgac ttatgacatt ccatattaga
      181 atgtttccta cattattggt aaatactata ttattttatt acttcctatg aaacgattat
      241 taattacatg acctacattt gcaaatatgt taaaggttgc acttattgga tcaacaggtg
      301 ctgtaggcca agaatttgta atagctttga ataaacaccc atggtttgaa ttaacttgca
      361 ttgcttcatc tgagagatct gcaggaaaga aatatgtcga tgcactccgg gatcccaact
      421 ctggaatcct gcgatggcat aataaagagc aaattccaga atatatacat gacatgattg
      481 ttagcaaagt tgaagaaata gatgcaaaaa aattcgattt agtatttacc gcacttgaat
      541 cagacgatgc gaaaataata gaacctaaat ttgcgcaatc agtaccagta atcagtactg
      601 ctgctgcttt tagatatgaa aatgatgttc caatattgat tccaggtata aatgataatc
      661 acatagaatt gctgaatgtt caaaggaaga atagaggatg gaacggattt atatctccgc
      721 ttccaaattg tactactact gggttagcaa ttactctaaa cccaatcttg aatgcatttg
      781 gaatagatga tgttttcatg acatctatgc aggcattgtc aggtgctgga agatctcctg
      841 gtgttattgc tcttgatatc atggataatg taattccgta cattccaaaa gaggaggaga
      901 aagtccaagt agaaacaaag aagattctag gaactttgaa ttccaaatct attgttcctg
      961 ctccagtcaa agttagttgt acatgcacta gagttccagt attggacgga catacagaaa
     1021 gcgtgtttgt aaaaacgaaa aaccaggtgg aaccagacaa agtaaaggag gaaatgttaa
     1081 agttctcaaa atctgctaca gaaaaaaaat taccgtccac tccaaaagag tatatcattg
     1141 tctatgatga tccgacaaga ccccaaccac gtatagacag agagatcaat gacggaatga
     1201 caacatttgt aggtagattg agaaaggata cagtatttga taatggtgtc aaatatatct
     1261 tgctatcaca taatgagaaa atgggatcgg caaagggtgc tgtattactt gcagaattat
     1321 taaaggacaa agagatgata taatttttct attattataa aaaaaacaat taaatttgaa
     1381 attaataggt ttattaaccc ccaaattgaa gatataatag gataattaga tgggaagaat
     1441 cgatgattta gatctaaaga ttttgagcga gctttccaaa gatgcgagta tttctgtgcc
     1501 acgtctctca aaaaaaatta atatcaatgc ttcagttgtc tatagtagaa tcaagagact
     1561 tttaaagagg ggactaataa agaagtttac aatagttatc aatgatgagg ctcttggttt
     1621 cggtgtaaga tcactcactg ggattaatat ggattctaaa ttaagagata atgtccttaa
     1681 cgagttattt aaaattccag aagtgcgcga aattgcagaa gtaacgggca gatttgatat
     1741 tttagttaca atgaccgccc gttcccttga tgaaatacat caactgattt cagaaaaggt
     1801 cggtcatgtt gagggagttc aaaaaacaga aacttttatc gaaatgagaa agactgctcg
     1861 agaaataatt tatccgacat ctatatctaa ataaggttat ttactgtttt tgaaaattat
     1921 aaataaccac atattctctt ataaagggtg atacccttaa tttgatacca caactgacag
     1981 taggtaatac ggtcagaaat tattatgagc ttacaaaacc aaagatctgg tatctgctag
     2041 ttttcacagc atttggagct gcgcttactg catctttatt atttgatatt tctattcagc
     2101 cattaacttg gctcttgctt attggtggag tggctgctgg ttccgcagcc gctgatacgc
     2161 tgacagggta caatgaccga gatattgatg caattatgga taggacaagg ggtagaccaa
     2221 ttccatcagg gagagtttca ccacaaaagg cactcatatt tggtttaatc ctggcagcaa
     2281 tttcgttaat attttcatgg tttatcaata tctgggcttt tgctctcatg gcttttggat
     2341 tgtttgataa tattattgta tatagcaaat ggctgaagag gagaagccag ctaaatataa
     2401 ttttaggagg tttttcaggt gcagctcctg caatgatcgg ttatgtcgcc gtaactactc
     2461 aaaatattga gattggtttg gttatggcag gtcttgtttt cttatggatt ccgacccata
     2521 tatggagtct ggcgctacat ttcaagaggg actatacaaa agcaggtatt ccaatgcttc
     2581 caatagtctc tagcgagaag aaatcagttc gcataattgc atggacaaca ttgatgatgg
     2641 tagtcttcag tatacttcca ttctttttta accaatttgg tctaatctat ctgattactg
     2701 caggcatttt tggtgtagca atgataggtg tatcaatatg gttattaacc aagcctagtg
     2761 agaaagtgtc ctggatagta tttaaattct ctagtcctta tttgactgca ctttttattg
     2821 catttatggt agatgcattc ttccgttaat ttatgctatc agactaccta aacctgaata
     2881 aatatataaa acacataaaa aattctatgt atgtgagcta aagagttact caattaattt
     2941 tttctataag tgaaagctat acctatatta ttttttaaag tacctgtgac aaaaaagaat
     3001 gaaattagcc ggttttgcgc cttattgtca atcgaaattt aaagataagt tagatttcta
     3061 ataactataa atagaataat actggttcgg gtttgctaga agatgacaaa cgacaatggt
     3121 aaaaaacaca caaaatgtgt tgcttattca catataaagt atcagttaag tggttaaaga
     3181 gactccatat ttaagaaaat agccttaaag agattgtaaa gaaattgtaa agaaatagat
     3241 agaattgttt gatagctaga aggctcttaa tcaagtcttt tcctactatc tctaactttg
     3301 atcttcaatt acaatcatgg tcaatgatgc tttaatttta tcaattcttc ttatatgcca
     3361 agtaataatt tctcttaatt tatc
//
LOCUS       DATAAS010000362         2095 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1599021, whole genome shotgun sequence.
ACCESSION   DATAAS010000362 DATAAS010000000
VERSION     DATAAS010000362.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2095)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2095)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2095
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1599021"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            460..636
                     /locus_tag="VHF08_05890"
     CDS             460..636
                     /locus_tag="VHF08_05890"
                     /inference="COORDINATES: protein motif:HMM:NF013522.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016853 - isomerase activity [Evidence
                     IEA];
                     GO_process: GO:0006725 - cellular aromatic compound
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tautomerase family protein"
                     /protein_id="HEX2068213.1"
                     /translation="MPIITVAMYSGRSQREKDRLAEAITEDVIKILKVEKKDVIIVFQ
                     EEPHGNWYSSGIRI"
     gene            1263..>2095
                     /locus_tag="VHF08_05895"
     CDS             1263..>2095
                     /locus_tag="VHF08_05895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HEX2068214.1"
                     /translation="MVQSFSEALAKQIILFDGAMGTEIQKLNPDSNDFPDKKDGFNDG
                     LTLSRPEWIKQIHRDYLKAGADCIETNTFGSNKLKLDEYGYGNKTVELNKKAAELGRE
                     VCREFDDKQCYVIGSIGPTGYLPSSNDPDLGQISLDTIKEAFELQAQGLILGKVDALL
                     IETSQDILEVKLAIIGCHDAMCNLGKKVPLISNVTLDQYGKMLLGTNVQAAYTTVSDM
                     GIDVFGLNCSTGPVEMTPSVRWLSEQDDLPILVMPNAGMPKNEGGKAVYKMTPFEIRE
                     KL"
BASE COUNT          774 a          312 c          360 g          649 t
ORIGIN      
        1 aagatatcta atcgttaatg gatcacattt aatataaatc tcaattttta agaaagcatt
       61 acctgacggt tattaatgaa ccatcatagt gataagctta taattaatac gaaaaagtac
      121 aatgagtaat aataaaatca ccttctagta tagaaatcca tacaaaacca gcgcatgaat
      181 tttctacttt tcaaataact aatcaatgct atcatttttt aggttctttt attcgcctat
      241 tagatttatt cagctttcat aatgttttgt cattcttcat ttgatacgtt tctattatta
      301 agaataaata aatcaaaagc ataccacata gcaatgaaaa tactcttatc ttaaaaacaa
      361 tcatattaaa taattattat aggtagtaat attctaatat tgtattagat ttaaaaaata
      421 attagtaatt cttatttatt actcctatct attctttgca tgccaataat tacagtggcg
      481 atgtatagtg gtagaagcca aagagaaaag gataggctgg cagaagcgat tacagaagat
      541 gtaataaaaa tactgaaagt cgagaaaaaa gatgtcataa ttgtgtttca agaagaacca
      601 catggtaatt ggtattcatc aggtatccgt atttgagtta gttgcattaa agcaaatttt
      661 ttgatggatg catgctaaag gaagaaataa aagccatatt gatccattca ttcttttatt
      721 tgcttttcta tcatctgtat tttaccattt aaattattct gttgtcacca tatactttct
      781 tattaccttt tgaatctgaa tgagtctctt ctcctgccat taaaactgac tattacagcc
      841 gatagatttg catattatat ctgtacagat gcttagttgg aaaatgaatt gtttgtaaat
      901 ttatatggct cctctgagga tcataagaat aaaatatatg attgtgacgc tactttatta
      961 ggtggttagt ttatttctac atatatctaa aaataccgcg ctacaccctt taaaaaaagg
     1021 ccaagatgaa aaatgataag tctataagca gacaataatc atcttcttga attaaaaaat
     1081 ttggatactt ccaatacctt atgagatcag tggcaaagag tctatacaat aaccatattg
     1141 gaaaatggat attgccagaa caaaaaagag atagcgctaa gctcatgaat aagaaagaaa
     1201 ataaaagtaa agtgacagaa acgtattaaa ctcatataca atattttgta tttcattata
     1261 atatggttca atcatttagc gaagcacttg caaaacagat aattcttttt gacggggcca
     1321 tgggaacaga aatacagaag ttgaatcccg attctaatga tttcccagat aaaaaagatg
     1381 gttttaatga tggtttaacc cttagcagac cagaatggat aaaacaaatc cacagagact
     1441 acttaaaagc aggagcagac tgcatagaga caaacacatt tggaagtaat aagttaaagc
     1501 ttgacgaata tggatatggt aataaaactg ttgaactcaa taaaaaagct gctgaactcg
     1561 gaagagaagt atgcagagaa ttcgacgata aacaatgcta tgttataggt tctataggtc
     1621 caactggcta tttaccaagc tcaaatgatc ctgaccttgg acaaatatca ctagatacca
     1681 tcaaagaagc atttgagctg caagcacaag gtctaattct tggaaaggta gatgcactat
     1741 tgattgaaac cagccaagat attctagagg tgaaacttgc catcattgga tgtcatgatg
     1801 ctatgtgtaa tttaggaaaa aaagttccat tgatatcaaa tgttacacta gatcaatatg
     1861 gcaagatgtt gcttggaaca aatgttcaag cagcttacac tacagtcagc gatatgggca
     1921 tcgatgtttt tggtttaaat tgctctacgg gtccggtgga aatgacgcca agtgttagat
     1981 ggttaagtga gcaagacgat ttgccgatat tagttatgcc gaatgcagga atgcctaaaa
     2041 acgaaggagg taaggcggta tataaaatga ctccatttga aataagagag aaact
//
LOCUS       DATAAS010000363         1549 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4171374, whole genome shotgun sequence.
ACCESSION   DATAAS010000363 DATAAS010000000
VERSION     DATAAS010000363.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1549
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4171374"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..567
                     /locus_tag="VHF08_05900"
     CDS             <1..567
                     /locus_tag="VHF08_05900"
                     /inference="COORDINATES: protein motif:HMM:NF017758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HEX2068215.1"
                     /translation="GGTPTQEKAKLPISSPPESIVKTMENTMMISAAERELNESIQDT
                     IIENAEVTGYTMLIQMAVKMNVADAIPSLRQNLKEEEEMFGWLRANAPAMFAKLWPQI
                     EGESSSLNLESSSSSSSIPATMQDQQQEEDDEKFKGGSTTRHGGHLTVTTEAVSDRAN
                     ITADTIAEERKDQKRHKTTRKRGKANNF"
     gene            complement(977..1225)
                     /locus_tag="VHF08_05905"
     CDS             complement(977..1225)
                     /locus_tag="VHF08_05905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068216.1"
                     /translation="MVDNNKENSDTEFVVLKVYKSVIDKLIKDLKETEKINKNYVPNY
                     DLILVRFRDMIIDLGSHEVLKNAIISTDKTSMLGRDEL"
BASE COUNT          564 a          261 c          228 g          496 t
ORIGIN      
        1 ggtggaacac caacacaaga aaaggctaaa ctaccaatat catctccacc tgaatcaatt
       61 gtaaaaacaa tggaaaatac aatgatgatt tctgctgcag aacgtgaact aaatgaatca
      121 atacaagata ccataataga aaatgcagaa gtaacaggat acactatgct tatacaaatg
      181 gcagtaaaaa tgaacgtggc tgatgcaata ccttctctaa gacagaatct taaagaagaa
      241 gaggaaatgt ttggatggct tagagctaat gcacctgcca tgtttgcaaa actatggcca
      301 cagatcgaag gggaatcttc gtccctcaac ttagaatcgt cgtcgtcttc atcatcgata
      361 ccagcaacaa tgcaagacca acaacaagaa gaagacgacg aaaagttcaa aggcggtagt
      421 acaacaagac atggagggca tttaacagtc acaactgaag ctgtatcaga tagagccaat
      481 attacagcag acactatagc agaggaaaga aaggatcaaa aaagacacaa gactaccaga
      541 aaaaggggaa aggccaataa tttttgagga gtctttaaat cgaaccattt ttattactaa
      601 tagttaaaat ttccacttta atatcgacat tgtcactgat ttcacccgcg tacgtctact
      661 tttaatgtta attaaaccaa ttgcaaaata ttgcatgaat ataataatga gccactatcg
      721 tgcggttctt tgtctttgta tgtcatattc cattttttta ataataattt tttaattact
      781 aaagtggttg tcgtcacaat acggcaagat ggattaataa cacctatttg ttatttgcta
      841 ttgttattaa tgtaattgga atgtatggaa attcgacatt gttatagaga ttataaaata
      901 taaaaatatc cagcattatc ccattcatca tatactcttc ttaacaaacc ttaggacaat
      961 atcttcaaaa agtcctctat aattcatctc ttcccaacat agaggtttta tcggtggata
     1021 ttatcgcatt tttaagaact tcatgggaac cgagatctat tatcatatct ctgaaacgaa
     1081 ctaatatcaa gtcataatta ggtacgtaat ttttgtttat cttttcagtt tcttttaaat
     1141 ctttaatcaa tttatctatt acagacttat agactttcaa tacaacaaat tctgtatcag
     1201 agttttcttt attattatct accatttctc atcttcgata aaaaattaag ttaactaatt
     1261 aatctctttc gtattccaat atcaatgtca attaagtttc gaaactcact ttcgaaacag
     1321 tcagatttta taaataacta tgtctgtctt tctaatgatt aataacatag attcgatcgg
     1381 actcgtagag tactgctgat ttgcaaatat cctatataac cattaataaa atttatgata
     1441 acagatttga atttgcctat aagctattct aaatagtaaa tttactattt agaatagctt
     1501 ataggcaaat tcaaatctgt tatcataaat tttattaatg gttatatag
//
LOCUS       DATAAS010000364         6681 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1601715, whole genome shotgun sequence.
ACCESSION   DATAAS010000364 DATAAS010000000
VERSION     DATAAS010000364.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6681)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6681)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6681
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1601715"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..406
                     /locus_tag="VHF08_05910"
     CDS             <1..406
                     /locus_tag="VHF08_05910"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF012441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004590 - orotidine-5'-phosphate
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0006207 - 'de novo' pyrimidine nucleobase
                     biosynthetic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="orotidine 5'-phosphate decarboxylase / HUMPS
                     family protein"
                     /protein_id="HEX2068217.1"
                     /translation="ASKQAHKINFGIIALVYMSHPGAEESFGINVVSANKQISGSSQL
                     TQMYKIFFDYASKSHVDGIIIGATQDKILNELSGHKELPVYSPGLGKQGGDIAKAANN
                     GTNFFIIGRSIIESKDPLGVIQKLQQEISNNI"
     gene            complement(409..849)
                     /locus_tag="VHF08_05915"
     CDS             complement(409..849)
                     /locus_tag="VHF08_05915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEX2068218.1"
                     /translation="MKEMIREERSAGAVLFSLDSKAGEIEYLLLNYAAGHWDFPKGNI
                     EDGEDEIQTARREIQEETGIYDIEFFKGFRNKIEYHYRHNQRLIQKEVIFFLAKTSIR
                     DVTLSYEHHAYTWLAYEKALALLTYKNAKNVLIEAKLFLEQNSP"
     gene            complement(888..1073)
                     /locus_tag="VHF08_05920"
     CDS             complement(888..1073)
                     /locus_tag="VHF08_05920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068219.1"
                     /translation="MPVHGEYNEDIHKWYCSYWLTMEEWEDIHDYAPSPFLDLVTDKN
                     NDFEGSNKEDADEYRND"
     gene            complement(1148..1960)
                     /gene="uppS"
                     /locus_tag="VHF08_05925"
     CDS             complement(1148..1960)
                     /gene="uppS"
                     /locus_tag="VHF08_05925"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl diphosphate synthase"
                     /protein_id="HEX2068220.1"
                     /translation="MEIQDIPSRALAETIFKRSGFYSIYERRLESQVIKNSLPNHIAI
                     ILDGNRRWARYHFAGTENGHLMGADKAEELLNWIHDLRIRITTLYVLSTENLERNGEE
                     INTIYKLLQNKLEKLYKDSRIHRRQMKIKAIGNVEILPKQLQEILSKLERETANYNNM
                     FLNIAVAYGGQRELVDAIKKIATMTKSGKLDIDDIDENIIESCLYTSHLPQPEPDLIL
                     RTSGEKRLSGFLIWQSAYSELVFMDVFWPEFRKIDLMRAIRTYQRRIRRYGR"
     gene            complement(2029..3207)
                     /locus_tag="VHF08_05930"
     CDS             complement(2029..3207)
                     /locus_tag="VHF08_05930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF373 family protein"
                     /protein_id="HEX2068221.1"
                     /translation="MPLTTDTDNYQKEIHPIDSNVYKSFTKHNKILVLCIDRDDDIGS
                     KGSIETPIVGRDCCIDAGIRLAIEDPEDSDVNAIFAAIKSYEELLSKGYDSEVALVAG
                     KFNRGIEADEKIGLEIDGILGKYKADAAVIISDGEDDETVIPIIQTILPIMSIQRIVV
                     KQSRSVEYSYAVLGRYIKMLVFDPRYSKFFLGVPGALLIATGLATVLGLTKEAIAIVL
                     SVLGSAFIIRAFDIDKALGSLDRPTPSAFIRIFSIFAGILIILVSLVNGFSSIPTEVL
                     TSNISPAEIITNRVIVGSFAHGTITLLWIGIATILSGTLLSNWFKGSIRIMSDILRLV
                     VLSLLYIPILQFTSVLTEGTSPFTLISSLLIGLAITLVAVTFLFQYFRNRKGGENIKH
                     "
     gene            3676..4584
                     /locus_tag="VHF08_05935"
     CDS             3676..4584
                     /locus_tag="VHF08_05935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX2068222.1"
                     /translation="MLYTPDDMNKPSMNSSVSSRRMKSSPNLGEIIYKKYLTDELAIL
                     RLKPQEGNVPHFQAGQFVTLGVNLLHHNNNNNKITYRAYSIASPPEEKRHFEFYIKKV
                     REPLPGKVTSAIFNLKEGDPVYWHYPAGLFTIEEKKMDGSMETRRLILVASGTGLAPF
                     ISYILHLSNTNTHREIILLHGARYTAELGYRDLLESLQTKTQHNWNFKYIPTVSRPDH
                     PLSTGWNGNNGRVESLLIRNNGGISKLERIVGERINPKNSFFHICGYQGTIDSVINLL
                     TPLGFVTNKNKRTDGSFDIKIETYGS"
     gene            4693..5001
                     /locus_tag="VHF08_05940"
     CDS             4693..5001
                     /locus_tag="VHF08_05940"
                     /inference="COORDINATES: protein motif:HMM:NF016157.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF424 family protein"
                     /protein_id="HEX2068223.1"
                     /translation="MNYALRRMRYQGSIMVNICDIELVGTKLEHGDIVVDLSKEYFQQ
                     EIIEESKAKNLLQTCSIANLVGERIVNQAIKLRLAKEISIKRICGIPFLMIFKFHHRY
                     "
     gene            5034..5873
                     /locus_tag="VHF08_05945"
     CDS             5034..5873
                     /locus_tag="VHF08_05945"
                     /inference="COORDINATES: protein motif:HMM:NF013341.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protein kinase RIO"
                     /protein_id="HEX2068224.1"
                     /translation="MLGKEEKLEKNRAGYAHNTAMDRADRRYLRHERENRLLIKKSED
                     RRVFDDVFDMRTLMVLNSMISDGVFKYLRSPFASGKESKIYLASDNNDKFLAIKIYLT
                     VSAEFKKRLQYIAGDPRFSNIKQGSQNLIATWAKKEFRNLKTAYEAGVSVPNPYQVRQ
                     NVLAMEFMGNSEGNPYLNLADADPITSEDYDDVIEETTKLYNKANLVHADLSQYNIFK
                     DVDHARIILFDFGSSVDIKHPNSKQFLTRDIVNINNFFAKHGVKILANELALKRVTGE
                     INN"
     gene            5870..6448
                     /locus_tag="VHF08_05950"
     CDS             5870..6448
                     /locus_tag="VHF08_05950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEX2068225.1"
                     /translation="MIFQQVIKIPKDRIGVIIGKNGKVKGQIEDKCSVTIEVDSEYGD
                     TIISAGTKPVEEMEPFKAVEIVSAIGKGFSPERAYRLLSEEEVLQLIDLRDYAGKSPN
                     ALSRIKGRIIGEAGKSRKTIEDLSGTYISVYGHNVAIIGTFEEIKLATEAVTMLSKGR
                     SHANVYNMLQEAKRKSKLDRMQLWENDTMRKL"
BASE COUNT         2235 a         1158 c         1186 g         2102 t
ORIGIN      
        1 tgcatcaaaa caggcccata aaattaactt tggaattatt gctctagtct atatgagtca
       61 tccgggagcg gaagagagtt tcggtatcaa tgttgtttct gcaaacaaac agatttctgg
      121 gagtagccaa ctaacacaga tgtacaagat attttttgat tatgcgtcta aatcccatgt
      181 cgacggtatt ataatcggag caacgcagga caaaatctta aatgaattgt ctggtcacaa
      241 ggaattacca gtttattccc cagggttagg taaacagggt ggtgacatag caaaggctgc
      301 taataatggc acaaattttt ttattatagg ccgctccata atcgaatcca aagatccgtt
      361 aggtgttatt cagaagctac agcaagagat atcgaataac atatagaatt atggagaatt
      421 ttgttctaaa aataatttag cctctataag aacatttttc gcatttttat aagtgagtaa
      481 agccaaagcc ttctcatatg ctagccacgt ataagcatga tgttcatacg acaatgtaac
      541 atcccttatg cttgttttgg ctaaaaagaa gataacttct ttttgaatta atctttggtt
      601 atgcctatag tgatattcta tcttgtttct aaaaccttta aagaattcta tatcgtatat
      661 tccagtctct tcttgtattt ctcgacgtgc tgtctgtatt tcatcctctc cgtcttctat
      721 atttcccttt ggaaaatccc aatgtccagc agcataattt aataataaat actctatttc
      781 gcctgcttta ctatctaagg aaaatagtac tgcgccagcg gagcgttctt ctcgtatcat
      841 ttctttcata ttcaaagttt gactaacagt ttatacttat cagatcatta gtcatttcta
      901 tattcatctg catcttcctt atttgatcct tcaaagtcat tatttttatc agtaactaag
      961 tccaaaaaag gtgacggtgc ataatcatga atatcttccc attcttccat tgttaaccag
     1021 taactacaat accacttgtg tatatcttca ttatattcgc catgaacagg catattctaa
     1081 tgtcactttt tatattttgc aactaataaa tgatgccaag taatatcagc tataacatta
     1141 cagaaaatca tcttccatat cgccttattc tgcgttgata agtcctaatc gctcgcataa
     1201 gatcaatttt gcgaaattct ggccaaaata cgtccataaa taccaattca ctatatgcac
     1261 tctgccatat tagaaatcca ctaagacgtt tttctcccga cgttcttaat attaaatcgg
     1321 gttctggctg aggcaaatga gaggtgtaca agcaagattc aattatattt tcatctatat
     1381 catctatatc taatttgcca gatttggtca tcgttgcaat tttttttatg gcatcgacaa
     1441 gttccctctg tcctccatat gcaacggcta tatttagaaa catattgtta taattggcag
     1501 tctcccgctc taatttgctc aggatttcct gaagctgctt gggcagtatt tccacatttc
     1561 ctattgcctt gattttcatt tgccgcctat gaattctgga atctttgtat agtttttcta
     1621 atttattttg taacagttta tagatagtgt taatctcttc tccatttctt tccaagttct
     1681 cagttgacaa tacatagagg gtagttatcc taattctaag atcatggatc caattcaaaa
     1741 gctcttctgc cttatctgca cccatcaaat ggccattttc cgtaccagcg aaatggtatc
     1801 ttgcccacct tctatttccg tccaggatga ttgcaatgtg attaggaagt gaattcttta
     1861 tcacctgtga ttcaagtcgt cgttcataga tgctgtaaaa tccactacgt ttaaagattg
     1921 tttcagcaag ggctctgcta ggaatatcct gtatctccat cgaagtacat ccttaactgt
     1981 ttaacgacga ttttattgtt tttatttgca ttcttataga tctcgatgtc aatgtttgat
     2041 attctcgcca ccttttctat ttctaaaata ttgaaataaa aaagtcacag ccaccaatgt
     2101 aatagccaat ccaataagga gtgatgagat caaggtaaat ggactagtgc cttcagtcaa
     2161 tacagatgtg aactgcaaaa ttggaatgta aagcaagcta agaactacta gtctaagaat
     2221 atctgacatg atccttatac ttcctttgaa ccaattgctc aacaaagttc cagatagtat
     2281 ggtggcaata ccgatccata gcagtgtaat tgtaccgtgg gcgaaacttc cgactattac
     2341 tctgttagtg attatttctg ctggactgat attggaagta agcacttcag ttggtatact
     2401 tgagaatcca tttaccagag acactaaaat gattaggata cctgcaaaaa ttgagaatat
     2461 tcgaataaaa gcactcggag tcggtctatc aagtgatccc aatgctttat ctatatcgaa
     2521 ggcacgaatt atgaatgcgc taccaagtac actcaagaca atggctattg cctcttttgt
     2581 cagtcctagc acagtagcta gaccagttgc aattaataat gctcccggga cgcctaagaa
     2641 aaactttgaa tacctgggat cgaagacgag cattttgata tacctaccta gaacggcgta
     2701 agagtattcc acacttctac tttgttttac gacaatcctc tgaattgaca taataggcag
     2761 aatagtttgt ataattggaa ttacagtttc atcgtcttca ccgtcagaaa taattactgc
     2821 agcatctgcc ttatatttgc caagaatgcc atctatttcc aatcctattt tttcatcagc
     2881 ttcaattcca cgattaaatt tccctgctac tagagcgact tctgaatcat agcctttgct
     2941 taatagttct tcataggatt taattgctgc aaatatagca tttacatcag aatcttcagg
     3001 gtcttcaatt gcaagccgaa tgccagcatc tatgcagcaa tctcttccaa caattggggt
     3061 ctctatactg cccttagagc ctatatcatc atccctatct atacataaaa caagaatttt
     3121 attgtgtttt gtaaaggatt tgtatacatt actatcaatc gggtggatct ccttttgata
     3181 attatcagtg tcggttgtta ggggcataaa gtattcggtg taattatagt ataatcgcgg
     3241 cctgttaatt aatttgatca aatgtaatgt gattcatatc attgatgatt ccgaagttta
     3301 taattatata tttaaataga tatgatttac agaagctcga tggaatattt cactataccg
     3361 cggtatatct tagaagatta tgacctattt ccaagattta ttttaaaaag tgattgcgtg
     3421 tctgtcaaca catagaatat tttattacac ctcgatctaa aggagatagt gttgattgtt
     3481 acatatatcg tcgttcgtat gagttggctt gaaaaattat tctattatga ttaaaatata
     3541 actctagcaa gttaatctaa taatagatca tgataaatat caagtgaaat ctatttatta
     3601 gattattatt cctcttaaca aacaggataa ctgtttgtat aaaataaata tatatagcat
     3661 cagttacagt ttataatgct ttatacgcca gatgacatga ataagccatc tatgaattcc
     3721 tctgtaagca gcaggcgcat gaaatcatca cctaatttag gagaaataat ttataaaaaa
     3781 tacttaactg atgaattggc aatactgcga cttaagccac aggaaggaaa tgttccgcat
     3841 tttcaggcag gccaatttgt gacgctgggt gtaaacctat tgcatcataa taataataat
     3901 aataaaataa cttacagggc atattctatt gcatcgccac cggaagaaaa acgacatttt
     3961 gaattttaca tcaaaaaggt aagagaacct cttccaggta aggtaacgag tgctatattc
     4021 aacttgaaag aaggagaccc agtttattgg cattatcctg ctggattatt caccatagaa
     4081 gaaaagaaaa tggatggatc aatggaaaca agacgactca tacttgttgc ttctgggaca
     4141 ggtttagcgc cttttataag ttacattctg catttaagca atacaaatac acatagagaa
     4201 ataatcttgc tacacggagc aaggtatacc gcagagttgg gttatagaga tcttttagaa
     4261 agtttacaga caaaaactca gcataattgg aactttaaat atatacccac tgttagcaga
     4321 ccagatcatc ccctatcaac aggatggaat ggaaacaatg gtagagtaga gtcattactt
     4381 ataaggaata atggaggaat ttcaaagtta gagagaattg taggagagag aattaatcct
     4441 aaaaactcat tctttcatat ttgtggatat cagggaacta ttgattcagt cattaatttg
     4501 ttgactcctt tgggatttgt cacaaacaaa aacaaaagga cagacggatc ctttgatatt
     4561 aaaatagaaa cttatggttc atagcgaaat gtattataac atagcaaaac gacaagtata
     4621 tgaaatatta gctatgcata catctatgga tgctattatc attatatata tattcttgca
     4681 gagcgcttca caatgaatta tgcacttaga aggatgagat accaaggatc aatcatggtt
     4741 aatatatgcg atattgagct agttggaact aaattagaac atggagatat tgtagttgat
     4801 ctaagcaagg aatattttca acaagaaata attgaagaaa gcaaggctaa gaacctcctt
     4861 caaacgtgct ctatagcaaa tctagtggga gaaagaattg taaatcaggc cattaaactc
     4921 agattagcaa aagaaataag cataaagagg atatgtggta tacctttctt gatgattttt
     4981 aagtttcacc atagatattg actaatagtt aaataagtaa aaacatattt ggtttgttgg
     5041 gaaaagaaga aaagttggaa aagaatagag ctggctatgc gcacaataca gctatggaca
     5101 gagcagaccg acgatacctt agacatgaac gtgaaaatcg gttgctaata aagaaatctg
     5161 aagacagaag agtttttgac gatgtttttg atatgcgcac tcttatggtt ctaaatagta
     5221 tgattagtga cggagttttc aagtatctaa gaagcccttt tgcttcagga aaagaatcta
     5281 agatatattt ggcatcagat aataatgata aatttcttgc gataaaaata tatcttaccg
     5341 taagcgctga atttaaaaag agattgcaat acatagccgg ggatccacga ttttcaaata
     5401 ttaaacaagg ttctcagaat ttgattgcca catgggccaa aaaagaattc cgaaatttga
     5461 agactgctta tgaggctggg gtaagcgttc ctaatccgta tcaagttcgt caaaacgttt
     5521 tagcaatgga atttatgggt aattctgaag gtaatcctta tttaaatttg gcagatgcag
     5581 atccaatcac atccgaagat tatgacgatg tcatcgagga gacaacaaag ctttacaata
     5641 aagcaaatct agtgcatgcg gatttatctc aatataacat attcaaagat gtcgatcatg
     5701 cgcgaatcat attatttgac tttggatcat cggtagatat caaacatcct aattcaaaac
     5761 aattcttgac acgtgatata gttaatataa acaatttttt tgcaaaacat ggtgttaaaa
     5821 ttctagcgaa cgaattagca ctaaagagag ttacaggaga gataaataat tgatctttca
     5881 acaagtaata aaaattccaa aggatagaat aggcgtcatt atcggaaaga acggcaaggt
     5941 gaaaggacaa attgaggata aatgtagcgt tacaattgaa gtagacagtg aatacggaga
     6001 taccatcatt tctgctggta caaagcccgt tgaggaaatg gaacctttta aagcagtaga
     6061 gattgtctct gctattggca aaggattctc ccctgaacga gcatatagat tgctaagtga
     6121 agaagaagtt ttgcagctaa tagatttgag agattatgcg ggtaaatccc ctaatgcatt
     6181 aagtagaatc aaaggaagaa tcattggaga agccggtaaa tctaggaaaa cgatcgaaga
     6241 tcttagcgga acatatatct ctgtctatgg tcataatgtc gcaatcattg gaacttttga
     6301 agagatcaaa cttgctactg aagctgtgac tatgctatcg aagggaagat cgcatgctaa
     6361 tgtctacaat atgttgcaag aggcaaaaag aaaatctaag ttagatagga tgcagttatg
     6421 ggaaaatgat acaatgcgta aactatagta tctacattca aattactact gatgacaaaa
     6481 atgatcaaac tgccgaaact agttaaacaa agttaatttc ttttttctgt actgttctga
     6541 aactcaacga caaggaaaca gcagtcgaat taaacaataa gattgctctc tacataaata
     6601 agttaggaag ctataatcta gatataaagt actatgatgg agccttagag ttaagtcccc
     6661 tcgacatttg acgaagttca c
//
LOCUS       DATAAS010000365         4343 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4718053, whole genome shotgun sequence.
ACCESSION   DATAAS010000365 DATAAS010000000
VERSION     DATAAS010000365.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4343)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4343)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4343
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4718053"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            213..521
                     /locus_tag="VHF08_05955"
     CDS             213..521
                     /locus_tag="VHF08_05955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEX2068226.1"
                     /translation="MAKILVGKTDDIGEGKLTHVQAGGKEVLVANVKGNYYAMGNICT
                     HAGAELHEGVLEGKELTCPWHGAKWDVTTGSLIWFPQKLKPEESFKVSIENDTVYVEV
                     "
     gene            complement(760..1773)
                     /locus_tag="VHF08_05960"
     CDS             complement(760..1773)
                     /locus_tag="VHF08_05960"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX2068227.1"
                     /translation="MKSDGSNRHHMADDRNRSSSIYYQRQTVLNLYNSGIPSDIIALQ
                     MDISKEEVDKIIKHINKEEEKKKISVRQALDTPSMGSFYLDAVFDLESAIKDTQSRVW
                     KALKVEPDFNVSTEEAQKVLEKFAKSKVTLVILDIALVDSTRLSMTLPVERFAAIIQA
                     FTQEMSLMVTAYGGYVLKYVGNAILSFFPDNNSADLHLSCINAVNCAQSMIKIMQQGI
                     NPILNQYDYPEMSVRIGIDVGENAVVQYGWTTHTYKLDNKKQVLKKTPRLDILGYTIS
                     IAAKMSALAKPNRIVIGQSVYEILDDNQKYAFEALPIRADVWSYVSSNTGGAYHIYES
                     ITE"
     gene            complement(2517..3110)
                     /locus_tag="VHF08_05965"
     CDS             complement(2517..3110)
                     /locus_tag="VHF08_05965"
                     /inference="COORDINATES: protein motif:HMM:NF025343.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEX2068228.1"
                     /translation="MCPRVTDQYKTEVKEKIVQAAITTFSKYGYDKTRMDDIAKSAKL
                     GKGTLYLYFKSKEELFYAISENSIKELKEQLSKLFSKKEDLVHDAEKFYDQYRNLVHD
                     SEKVSFEMIAESSRNPKLRKALYEQRMKVYDIVIDYLRRQIEKGFFRKDMDVNAIASG
                     LVALYDGLTISKLLGISEHYNKKTWTQTIRAIFTGIN"
     gene            complement(3147..>4343)
                     /locus_tag="VHF08_05970"
     CDS             complement(3147..>4343)
                     /locus_tag="VHF08_05970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068229.1"
                     /translation="LTSQLCLLIRSYPNIIHIHMKAMQKKKNNDHFLRSNAMNVSLAA
                     MIIATAGAFLQIGGTSWDVTSHLLLQPETFFTPSHTVLYTGIGLLTITAGVGGAFLIK
                     NKDLETKSFFISFKLFIIGSAICLVAGPSDFLWHETFGVDGLLSPPHLTLITGMLINA
                     VGVVLGITRIIVHLPPLKHKLIKAIMIPAFAALWFTTTWYVYMFSLPFSNGEHFRFNL
                     DPIVATLIAFIALPLLSSTIFLTASKAIGKFGAASAVVILVVGMNIFANIIPTGNILT
                     PLLPWYSMISILPVIVADLVLNSSIIKSKIGNLRTEIVTGMIVGSIFYVLNYPMLTWT
                     FSLPLNMPLESINNILPNFVNSMPIVLAITLGVGAVMGMIGAIISFKTINIPRASQHM
                     QYFKCE"
BASE COUNT         1426 a          720 c          684 g         1513 t
ORIGIN      
        1 taattccaga aattatcact tttgattgta tacataattg aattatgtta gctaaatata
       61 tagagataaa atattacatt tactattata agaagtagaa tatttagcac agagtatgag
      121 cagagtgata ataataatca aacaaatttt tggctttatt agaagaggaa tttttaatga
      181 tctatatata actttttttc aatgatctag ttatggcaaa gatacttgta ggaaaaactg
      241 atgatattgg agagggaaaa ctaactcatg tacaagctgg tggaaaggaa gttctagttg
      301 ctaatgtcaa aggaaattac tatgcaatgg gtaatatatg cactcatgct ggagctgaac
      361 ttcatgaagg tgtacttgaa ggcaaggagt taacctgccc atggcatggt gcaaaatggg
      421 atgtcactac aggcagtctg atatggtttc ctcagaaatt aaaaccagag gagtccttca
      481 aagttagtat agaaaatgat actgtttatg tagaggtcta aattctaaaa tattttcttt
      541 ttcttctttc ttattgtttt taatgttgtt ttttcttctc tgtatagttt agatatagtc
      601 aaatatctct caaagaacaa tactactcaa tctatggcgt gctgaattga ttataaacat
      661 gattttcaat tgctttgttc tttattacca gtgctaattg taaattcaca agttatttct
      721 tatattggca aattaaagat ccatccaatt acactgttat tattcagtaa tgctttcata
      781 aatatggtaa gcacctccag tattgctact gacataactc caaacatcag ctctaatggg
      841 caatgcttca aaagcatatt tttgattatc gtctagtatc tcatataccg attgaccaat
      901 tacaattcta ttaggttttg caagtgctga catcttggct gcaatactaa tagtataacc
      961 taaaatgtca agccggggcg tctttttcaa tacctgcttc ttattgtcta atttgtaggt
     1021 atgagtagtc catccatact gcacaactgc attctcgcca acgtctatac caatgcgtac
     1081 actcatctct ggataatcat attgatttag aatagggttg ataccctgct gcattatctt
     1141 gatcatagac tgagcacaat ttactgcatt aatacaagat aaatgtaaat ctgcagaatt
     1201 attatcaggg aaaaaagaga gtattgcatt tcctacatat tttagtacat atcctccata
     1261 tgctgttacc atcagagaca tttcttgagt aaatgcctga attatagctg caaatctctc
     1321 aacaggaaga gtcattgaca gtctggttga gtctacaagt gcaatgtcca atattacaag
     1381 agtaactttg gatttagcaa atttttctaa aactttctgc gcttcttctg ttgatacatt
     1441 gaagtcaggt tctactttca aagccttcca tactctagac tgtgtatctt taattgcaga
     1501 ctcaagatca aatactgcat caagataaaa tgaacccatg gaaggagtat ctaatgcctg
     1561 tctgacggat atttttttct tttcttcttc tttattgata tgtttgataa tcttatcaac
     1621 ctcctctttg ctaatgtcca tctgcaaggc aattatatcg gatggaatcc cggaattata
     1681 caagtttaat acagtctgac gctgataata tatactactg cttctgtttc tgtcgtcagc
     1741 catatgatgt ctatttgatc catcactctt catagtatta atcttaacgc agttctacct
     1801 tttcttacaa actacaattc aaaaataatt aatgccgcat ttatctattc ttaatgtatt
     1861 aaactatatt catgcactat gttactaaat aggatgaagg caaaaagact gctgcatttt
     1921 agtatttgaa tcttgcatat ttctcaattg tatatatatc ataaatagga tcttatgcta
     1981 gttcataatt cttactgtat atataaatat ataaatatat acacatatat acatattaaa
     2041 gtcgaaacaa cagatatagt gatagatgcc atcaatttgg catctgatta gaaaaatcta
     2101 agaagattat taaattaaat gcctgcttct ttaattatta ggtataataa ttgtatttat
     2161 atttactata aaattggcat tactatactg caggttcgat atcaggttag agagaaatat
     2221 ataaatgaat aggatatttt ttattatgtt atattgatca agtgacatgt gaagaacgct
     2281 gcaatttttt ctgtgaaaaa ggaacgagtg atataactgg cttgccaata acattttgaa
     2341 atcacttaca aggacataag agaagtaaaa gaaaagctct tgtcaaaaat atcttatgcc
     2401 ttccttgtaa cggagttaag aatatttgct gttctatgag agtccataaa gagcatctga
     2461 tagaactata tgagttctac aataattttg atattacttc tatcaagata ttaaagttaa
     2521 tttataccgg taaatatagc tctgattgtc tgtgtccatg tctttttgtt atagtgttca
     2581 cttattccta atagtttact tattgttaat ccatcataaa gagctactaa acctgatgcg
     2641 atagcattta catccatgtc ctttctaaaa aatccttttt ctatttggcg acgaaggtaa
     2701 tctattacta tatcgtatac tttcattctt tgttcatata atgcttttcg taatttggga
     2761 ttacgagatg attcagctat catttcaaag gatacttttt cactatcatg gaccagatta
     2821 cgatattgat catagaattt ttcagcatca tggacaagat cttctttctt tgaaaacaat
     2881 ttagataatt gttcttttaa ctctttgata ctattttcag aaatggcata gaataattct
     2941 tctttgctct taaagtaaag gtataatgta cctttcccta gctttgcact cttagcaata
     3001 tcatccattc tagttttatc atatccatat ttggagaaag ttgttattgc cgcttgaact
     3061 attttttctt taacttcagt tttgtattga tcagttactc taggacacat gttttgtatg
     3121 tttctccaac tatttttttc ttctatttat tcacatttga aatactgcat atgttgagaa
     3181 gctcgtggaa tatttattgt cttgaaagag ataatagctc ctatcatacc cataactgca
     3241 ccgacaccca atgtaatagc caagactatc ggcatagaat ttacaaagtt aggtaatata
     3301 ttatttatag actcaagagg catatttaag ggcaaagaaa atgtccatgt caacattgga
     3361 tagttaagta catagaatat tgaaccgact atcataccag taactatttc tgttctcaga
     3421 tttcctatct tagatttgat aattgaacta tttaatacca gatctgccac tattacagga
     3481 agtatagata tcattgaata ccatggtaac agtggtgtca aaatattgcc agttggaatg
     3541 atatttgcaa aaatattcat acccactact aatatcacaa cagcacttgc agccccaaac
     3601 tttccaattg ctttagatgc agttaagaat atcgtagaac tcagcaatgg taaagcaata
     3661 aatgctatta gagtagcaac aattggatct aaattaaatc ggaagtgttc cccatttgaa
     3721 aacggtagag aaaacatata cacataccat gtggttgtaa accataaagc tgcaaatgca
     3781 ggaatcatta tagctttgat taacttgtgt tttaatggtg gtaagtgtac tattatcctt
     3841 gtaattccca aaacaacccc aaccgcatta atcagcatac ctgtaatcaa tgtcaagtgt
     3901 ggaggactaa gtagtccatc aactccaaat gtttcatgcc ataggaagtc tgatggtcct
     3961 gctacaagac aaattgcaga tcctattata aataatttga aagatataaa aaaggattta
     4021 gtttctagat ccttattctt aatcaagaaa gctccaccta ccccagcagt tatggttaac
     4081 aacccaatac cagtataaag cacagtgtga gagggtgtaa aaaaagtctc aggttgtaac
     4141 agcaggtgag aagtcacgtc ccagcttgtt cctcctattt gtaaaaatgc acccgcagta
     4201 gctatgatca ttgctgctaa ggagacattc attgcatttg aacggagaaa atggtcatta
     4261 ttcttcttct tctgcattgc tttcatatgt atatgtataa tattgggata agatctgatt
     4321 aataaacata actgactagt tag
//
LOCUS       DATAAS010000366         5353 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4719426, whole genome shotgun sequence.
ACCESSION   DATAAS010000366 DATAAS010000000
VERSION     DATAAS010000366.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5353)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5353)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5353
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4719426"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1343
                     /locus_tag="VHF08_05975"
     CDS             <1..1343
                     /locus_tag="VHF08_05975"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068230.1"
                     /translation="KENRFDQEHTIPIWKSRQNPIDSSQVWTVKVDRQNNIWFTDEKQ
                     NSIWKYNNLLKTFEVFNIPGISESFGTTYPVSLDFDSSGNIYFVGIRSTSLWFGNITE
                     MKNGTSDGISQIPIPLQGFAGIDRDLISTGSLVVDENNNSVWLSMLAFARKGLIFKYD
                     MNSKTFEVFNLPPDLRSPVGITLENNNNSNLWITDHGTSIFYKLNYSDRKITKFVTSQ
                     TSPRVFGLNGTSEELGASAPSAAYTLPYWINKGSNGSIWFNEHTGNKIAVFNPVNMTL
                     VEYWIPTQNALFGQCQPTNAKNCGIANLLQFSVGNNNEVWFSEWSENKIGRVDTDKEL
                     PFSISSSEKEITIAKGKSAEIKLNLKTTSSSSPSSDQTINMIKSGTFTATGALGNSTG
                     SFSEELFSIAPGKSKQISFIFTPSSDLKSGEYTLMVGAENSAISYLNAIKINII"
     gene            complement(1406..2614)
                     /locus_tag="VHF08_05980"
     CDS             complement(1406..2614)
                     /locus_tag="VHF08_05980"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: protein motif:HMM:NF012389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEX2068231.1"
                     /translation="MRHNIMQVISDIDDSIFKGKKVFVRVDFNVSINNGSVGEDYRIR
                     MTIPTIEYLTKRRSKVIIASHLGRPKGFQCHYSLAPVARRLSDIIVRSKVNFVNDCVG
                     NSVQKEIEKMNEGDILLLENLRFHKQEEINDFEFSRQLASLADIYVNDAFSTSHRKHA
                     STYGAAKLFDLRLAGFSLDKEVKYLSMIKENPIRPFTFVVGGVKIKDKIGALENLLPK
                     ADKVLIGGAAAYTFLKAKGIETGNSLIDFEHLSWASEALSTFGDKIMLPNDHVISSSS
                     KDIHASMIKGDIPKNMAGFDIGIETAQRYSNEVSGNGSGTVFWNGPMGLFENGLFANG
                     TINIAKSMALAYWRGSKTLIGGGDTLEAMKKAGVSQGEVSHVSTGGGATLRFLAGDEM
                     PGIDALKSNN"
     gene            complement(2878..3393)
                     /locus_tag="VHF08_05985"
     CDS             complement(2878..3393)
                     /locus_tag="VHF08_05985"
                     /inference="COORDINATES: protein motif:HMM:NF003239.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEX2068232.1"
                     /translation="MKGVNYREPRGMPYVRREYISGKPQLKIARFSSGQARNDYDYKV
                     QLLVTEKMQIRHNSLESARLAANKTMAKAGDQSFFSMLKVYPHVILRENKMIATAGAD
                     RLQEGMRRAFGKSTGLAARVQPGQVIFEADVSAANLRLAKEGFKVASSKLGCPTTTRI
                     ITLREQVSQTD"
     gene            3451..4071
                     /gene="endA"
                     /locus_tag="VHF08_05990"
     CDS             3451..4071
                     /gene="endA"
                     /locus_tag="VHF08_05990"
                     /EC_number="4.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000214 - tRNA-intron endonuclease
                     complex [Evidence IEA];
                     GO_function: GO:0000213 - tRNA-intron endonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0006388 - tRNA splicing, via
                     endonucleolytic cleavage and ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-intron lyase"
                     /protein_id="HEX2068233.1"
                     /translation="MSSSSSPSSSPSSSPSSSPQQSPCNELPYVIEAFLVEKELKITV
                     KDTRFQDQLRSKGFGEKEDSQYLLKPYEALYLIYSKRLNLKREMNNINFDSLVEVVLK
                     QDRYILTKFLIYRDLRSRGYVAKEGFGFGVDFRVYERGDFDTKPAKYVVFGINEGINL
                     EVNDFSQIIKDIGKMGKDAIIAVVERRGEIIYYKVSTMHFTDIKNF"
     gene            4240..4608
                     /locus_tag="VHF08_05995"
     CDS             4240..4608
                     /locus_tag="VHF08_05995"
                     /inference="COORDINATES: protein motif:HMM:NF042555.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6659 family protein"
                     /protein_id="HEX2068234.1"
                     /translation="MQGNLCDTIIKLDRNIRFVGIVNDKGEVIEGGFQDGVEPLLEGT
                     DEQEMYTNSLSNMTLLKNYSDRLGKVKYSLTEHQKIAMMSVPLDNGILCLSVYSKDID
                     VDKLKNTILEIISTRTKTND"
BASE COUNT         1770 a          932 c          893 g         1758 t
ORIGIN      
        1 taaaagagaa tcgatttgat caagaacaca ctattcctat ttggaaatct cgacagaatc
       61 ccatcgattc ttcgcaagta tggacagtaa aagtcgatcg tcaaaacaat atttggttta
      121 ctgatgaaaa acaaaattca atctggaaat acaataacct tttgaaaact tttgaagttt
      181 tcaatattcc tggtatctca gaatcttttg gaactactta tccagtatct ctggattttg
      241 atagttcagg caatatttac ttcgtaggta tacgttcaac ttctctttgg tttggaaata
      301 taacagaaat gaaaaatggt acttctgatg gaatttcaca aattcctata ccacttcaag
      361 gattcgctgg catagatcgg gaccttatta gcactgggtc acttgtagtt gatgaaaata
      421 ataacagtgt atggctatcg atgttagcct ttgcaaggaa agggctaatt ttcaaatatg
      481 atatgaactc aaaaactttt gaagttttca acttacctcc tgacctgaga tctcctgtag
      541 ggatcacttt agaaaataac aataacagta acctatggat cacagatcat ggaacgagta
      601 tattttataa attaaactat tctgatagaa aaattacaaa atttgtcact tcccaaactt
      661 cgcctagagt ttttggtttg aatggcacga gcgaggaatt aggagcatca gcgccatcag
      721 cagcatatac tctgccttac tggataaaca aaggatccaa tggatctata tggtttaacg
      781 agcatacagg aaataaaatt gctgtattta atcctgtcaa tatgactctc gtcgaatatt
      841 ggattccaac acaaaatgca ttgtttggcc aatgtcaacc gaccaacgcc aagaattgtg
      901 gcattgcaaa tttactccaa ttttcggtag gaaacaataa tgaggtctgg ttttctgagt
      961 ggtcagagaa taaaatagga agagttgaca cagataaaga gctacctttt tctatttcat
     1021 cttctgaaaa agaaataact attgctaaag gaaaaagtgc cgagattaag ttgaatctaa
     1081 aaacgacatc atcatcatcg ccatcctctg atcagacaat taacatgata aagtcaggta
     1141 cttttacagc cactggagct cttggaaatt ctacaggatc tttcagtgaa gaattatttt
     1201 ctatcgctcc tggaaagtca aagcaaattt catttatctt cactccttcc tcggatttaa
     1261 aatccggaga atatacattg atggttggtg cagaaaatag tgctatttca tacttgaatg
     1321 caataaaaat aaatataatc tagaggtata tgtccatata atttctatta caattacaag
     1381 aagacagtta ttgttaaaat agtattcaat tattactttt taatgcatct atccccggca
     1441 tttcatcacc agcaagaaat cttagagtag cgccaccccc agtagaaaca tggcttacct
     1501 ctccttgcga aacacctgct tttttcattg cctcaagggt atcgccgcca ccaatcagtg
     1561 tttttgagcc acgccaatat gccaatgcca tacttttagc aatattgatt gttccgtttg
     1621 caaaaaggcc gttttcgaat aatcccatcg gcccattcca aaatacagtt cctgatccat
     1681 tgccacttac ttcgttagaa tatctctgag cggtttcaat gcctatatca aatcccgcca
     1741 tattctttgg aatatctcct tttatcatac ttgcatggat gtctttagat gaagaggata
     1801 taacatgatc gtttggaagc attattttat caccaaaagt tgacagcgcc tcacttgccc
     1861 aagacaaatg ttcaaaatct attaacgaat ttcctgtttc tattcctttt gcttttagaa
     1921 aagtataggc tgctgctccg cctatcagca ctttatctgc tttaggaagc aaattttcta
     1981 atgcgcctat tttatctttt atttttactc ctccaaccac aaaagtaaat ggtctgattg
     2041 gattttcttt tatcattgaa agatatttca cctctttgtc gaggctaaat cctgctaaac
     2101 gtaaatcaaa tagctttgct gcaccatagg tagaagcatg ttttctatga gaagtactaa
     2161 atgcatcatt tacatatatg tcagccaaag atgcgagttg tcttgagaac tcaaaatcat
     2221 ttatttcttc ttgcttgtga aatcgtagat tctctagtaa taagatatca ccttcattca
     2281 tcttttctat ttctttttga actgaattac caacgcaatc attgacaaag ttaactttag
     2341 atcttactat tatgtcggat aatcttcttg ctaccggtgc taaagaataa tgacattgaa
     2401 aacctttagg tctacctaaa tgtgatgcta taattacttt ggacctgcgt ttagtaagat
     2461 attctatagt tggtattgtc attcgaattc tgtaatcttc ccctactgag ccattattga
     2521 tgctaacatt aaagtcaacc ctcacaaaga cctttttgcc tttaaaaatt gaatcatcga
     2581 tgtctgaaat cacttgcata atattatgac gcatagggtt atactagtac cagaataaac
     2641 tttgtgctat tttaagaaaa gattatagag aataatgcct aggataaaat tatcaggtac
     2701 ttggacaatg gtctattcga ggcgagagag taaaatagtt taaatgagaa gtagcaacat
     2761 ccataagagc taaaggttga taatccatca gttattttaa tagtgtatga gtcattaaga
     2821 ttttctttat ctaaagaatt attacaaata tgatgacaaa aacatatcgg ctgattatta
     2881 atctgtttgt gaaacttgtt ctctgagagt aataatcctc gttgtagtag gacatcctaa
     2941 tttactggat gctactttaa agccttcttt agcaagacgg agattagcag ctgagacgtc
     3001 ggcttcaaaa atcacctgtc ctggctgaac tcttgcagct agtcctgttg acttaccaaa
     3061 agcccttctc ataccctcct gcaaacgatc agcaccggcc gttgcgatca tcttattttc
     3121 tctcaaaatc acatgtggat atacctttag catggaaaaa aaactctgat ctcccgcttt
     3181 ggccattgtc ttattggcag ctaatcttgc ggattccaaa gaattatgcc ttatttgcat
     3241 cttctccgta acaagcagtt gaaccttgta atcataatca ttccgtgcct gccctgaaga
     3301 aaaccttgca atttttaatt gtggtttgcc agatatatat tcgcgtctca catatggcat
     3361 accacgaggt tcacgataat taactccttt cataaaatat tcactgattt tgaattctta
     3421 aatgtggtta tgtactctga tttaatcgtt atgtcatcct catcttctcc ttcatcttct
     3481 ccttcatctt ctccctcatc ttctccacag caatcaccct gtaacgaact tccatatgtg
     3541 atcgaagcat ttttggttga aaaggaatta aaaattactg ttaaagatac tagatttcaa
     3601 gatcaattaa ggagtaaagg ctttggagaa aaagaggatt ctcaatatct actgaaacct
     3661 tatgaggctc tatacctaat ttatagcaaa cgtcttaact tgaaacgaga aatgaataat
     3721 attaattttg attctcttgt agaagttgta ctcaaacaag atagatatat cttgacaaaa
     3781 tttctcattt atcgtgatct tagaagcaga ggctacgtag ctaaagaggg ttttggattc
     3841 ggtgttgatt ttagagtgta tgaaagaggt gattttgata ccaagcctgc aaaatatgta
     3901 gtatttggaa tcaatgaggg cataaatttg gaggttaatg atttttcaca aataattaaa
     3961 gatataggga aaatgggaaa ggacgcaatt atcgcagttg tggagagacg tggagaaata
     4021 atatattaca aagtttcaac gatgcatttt acggatatta aaaattttta gttataagtg
     4081 taatcatatc acgctctttt agaaaaggat ataatgatta atttaaagtc aaaacaatca
     4141 gaatctaaat ggatttaaca tgccaccgtt aatgggtctg acaacaacta tggaagtgat
     4201 aaatcaacca tttatatcac tacaataata ttatttatcg tgcaaggcaa tttatgtgat
     4261 acaataataa aacttgatcg caatataaga ttcgtcggta ttgtcaacga taaaggagag
     4321 gtcatagagg gaggttttca ggacggtgtt gaacctttac tagagggaac cgatgaacaa
     4381 gaaatgtaca caaactcctt atcaaatatg acattactta aaaattatag cgatagatta
     4441 ggcaaagtca aatacagttt gacagaacac caaaagattg caatgatgag cgttccatta
     4501 gataatggta tactttgtct atcggtttat tccaaagaca tagatgttga caaattgaag
     4561 aacaccatcc ttgagataat ttcaacacga acaaaaacca acgactaatt agtcattttc
     4621 gtgctagaag atcttcctac agaaacacaa tactaataat ttaaaaaaga taaaggatct
     4681 gatgtaagcc aagtagatag attttacaaa taaagagttt gaaagggctg tgtttttaca
     4741 tagtgatatt tatcaggatt cctatcagca agcgactatt gtattggatg tattgatgtt
     4801 catttaatag tccaaaatgc aaactagctt attatatgat ccatattata gaataatcat
     4861 ttcataaaat ctttgaataa aaggtaatta tgagttgacc tctttttaaa ataccctgcc
     4921 agcacttttt gaattgtcat tgtcatggac aaaggtgctc gagtgcataa ttataaattt
     4981 atttacttcc ttactgaatg agttagtggc agtattccag tgttcataca atacttagca
     5041 ttgataacac gaatttcaag tatcgatatg ttctttttat cctaaaaaat gtagatatct
     5101 tttgagtatc gaatggaaag aaatttccag ttattctgtt aatgattgta ataatttcta
     5161 ataaaaagct atagaatgaa atatgatatt tattgttcta tgataatttt gtataataag
     5221 aggccaatac caccagagat agttgttatt atttgccatt aaaattaatt attgatatga
     5281 ttcttgattc gacaagattt ttatcagtca ttttactttt cagtatcaat gtaggatgat
     5341 gaccattatg ata
//
LOCUS       DATAAS010000367         1824 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_397663, whole genome shotgun sequence.
ACCESSION   DATAAS010000367 DATAAS010000000
VERSION     DATAAS010000367.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1824)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1824)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1824
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_397663"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            202..1008
                     /locus_tag="VHF08_06000"
     CDS             202..1008
                     /locus_tag="VHF08_06000"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013856.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2068235.1"
                     /translation="MKARDCNGWDAETYDNISTIQEEFALKLIQLRNWTGKEIVMDAG
                     CGSGRVTKILAKEIPNGKIYAIDIDVNMIDKAKDNLSQFENVTIINSDLLDLNLQIIS
                     SKVDVIFSNAALHWILNHQKLFNIFFELLNQNGQLLIQCGGYGNLRKAISIFDKVKDS
                     EKFKDYFKEWKEEWYFPKPSDTEKLLNDIGYNNIKVYLSEASISFVNKSSYSLYLKTV
                     VLGPYLRYIPSDNDKEEYLESILNEIEQNHFEMIWNLDYVRLNILADKII"
     gene            1406..>1824
                     /locus_tag="VHF08_06005"
     CDS             1406..>1824
                     /locus_tag="VHF08_06005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068236.1"
                     /translation="MKPLYFFLAVIITIVIGNSIIVFAESDSKMIYSNWILIINSLIA
                     AGLSAMIIFKDKDSKEEDKTNIFLTLGLVFWFIANIIWAYYEVVLDIVSPVPSLADLF
                     LLSAYGFLIYRLMIIYRNLGHVTNRKILLLIISGTGL"
BASE COUNT          684 a          224 c          297 g          619 t
ORIGIN      
        1 ctttagaaga agacagcgta tctacaaaag tccgccatgg ttcagtttca tctttgtgag
       61 aaaatcttca tttggaaata aactcatata atcaatcaga gggttcttca ctacctttaa
      121 gaggtaaaac tccaattaca gagggagagg tgtgttcctc aggaccatac tattattgct
      181 gagaattata tgtagtatat tatgaaagca agagattgta atggatggga tgcagaaaca
      241 tatgataata tttcaacaat acaagaagaa ttcgcattaa aactcatcca attaaggaat
      301 tggacaggaa aggaaattgt aatggatgca ggatgtggtt caggaagagt tacaaaaatt
      361 ttggcaaaag aaattccaaa tggaaagata tatgcaattg atattgatgt taatatgatt
      421 gataaagcaa aagataattt atcccaattt gaaaatgtga ctattattaa ttctgatctt
      481 cttgatctta atttacagat aatttcatca aaagtagatg taatattttc taatgcagca
      541 ttgcattgga tattaaatca tcaaaagttg ttcaatatat tttttgagtt actaaatcaa
      601 aatggacaat tacttattca atgtggggga tatggaaatt taaggaaagc tatttctatt
      661 tttgacaaag taaaagactc tgaaaaattc aaagattatt ttaaagaatg gaaagaagaa
      721 tggtattttc caaaaccatc tgatactgaa aaacttctca atgacatagg ttacaacaat
      781 atcaaagtat acttatcaga agcatcaata agttttgtca ataaaagtag ttattcgttg
      841 tatctgaaga cagtcgtatt aggaccttat ttacgctaca ttccctcaga taatgataaa
      901 gaagaatatc ttgaatctat attaaatgag attgagcaaa atcatttcga aatgatatgg
      961 aatctcgatt atgtaagact gaatatatta gctgataaga tcatataata ttaaactatt
     1021 cagtaaatgc ggaaatatga atgaaacaaa caagtattgc ctttaatgag gatgcaaaag
     1081 agtggtagaa taataaatgt aagctctata tgagctgtat agtacgataa tccttttagt
     1141 gcttatagaa cgggatctac aatttcaact tttattcaaa ttatggcttc taataattaa
     1201 taagactaca gtatgaagga attctcttca atacaaaagt aaatgtacac atatacataa
     1261 tctttaatca attaatgata acatcaatag ttattaacaa tattatttat tgaacgagac
     1321 tgatacatat ttgatgtact ataaaaatta tcctcgttaa gaaaatgttt tatactgata
     1381 tcataatctt aaagaaagag aataattgaa gcctctgtat ttttttttag cagtaattat
     1441 tactatagtc ataggaaatt ctattatcgt ttttgctgag tcagatagta aaatgatcta
     1501 ttcaaattgg atattgataa taaattctct tattgctgca gggctttctg caatgattat
     1561 ctttaaggac aaagatagta aggaagaaga taagactaat atttttctaa cattaggcct
     1621 tgttttctgg tttatagcaa atataatctg ggcatattat gaagtagtgc ttgatattgt
     1681 atcacctgta ccttctttag cagatttatt cttattgtct gcatatgggt ttctgatata
     1741 tagattgatg ataatatata gaaaccttgg tcacgttaca aatagaaaaa ttcttctttt
     1801 aataatctca ggtacaggtt tatt
//
LOCUS       DATAAS010000368         4260 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5258039, whole genome shotgun sequence.
ACCESSION   DATAAS010000368 DATAAS010000000
VERSION     DATAAS010000368.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4260)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4260)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4260
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5258039"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            480..1205
                     /locus_tag="VHF08_06010"
     CDS             480..1205
                     /locus_tag="VHF08_06010"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta family hydrolase"
                     /protein_id="HEX2068237.1"
                     /translation="MPEDKQLHYHHDIVRISPADEQQNIIEGDLTIPNITIDAKGIVI
                     FAHGSGSSRHSPRNQYVAQVLNNAGIATLLIDLLTKEEEKIDDVTREHRFNISLLARR
                     LLASTDWISQYPKIRNLNIGYFGASTGAAAALVAASERPNVISAIVSRGGRPDLAGQQ
                     VLNRIQAPTLLIVGENDKQVIHLNEKALEQLSRLEKKKKIVIIPGATHLFEEPGTLEE
                     VARRASGWFECFFLENRKDVGSH"
     gene            1334..1612
                     /locus_tag="VHF08_06015"
     CDS             1334..1612
                     /locus_tag="VHF08_06015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068238.1"
                     /translation="MEKTYNNSSCDARIHAYKNGKTMEQCKEDARKNTEVLSYEILKK
                     GEVSWARILEITDYDELVYKLTLKYLRQKGYDIGNNKIPRIKANTITS"
     gene            complement(1921..3936)
                     /locus_tag="VHF08_06020"
     CDS             complement(1921..3936)
                     /locus_tag="VHF08_06020"
                     /inference="COORDINATES: protein motif:HMM:NF014443.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0006812 - monoatomic cation transport
                     [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="potassium transporter TrkG"
                     /protein_id="HEX2068239.1"
                     /translation="MGTLVNYKVKMVADPLDRSVLSYIHGQFIVLHEDVNVAMAVRDM
                     HSQRAEMIIVTKDNRPVGVVTDSDILDKVVMKGEDSDQILLKSIMSSPVISLSAKGTV
                     RQALELMRVNTIKHIPVTDNIKIFGIITQEELANAIRTSVLERTFRSYRAVIRAHYKP
                     VIGNLGFVMQFAGILLFAPAFLATILNETVPATGIFLGLTFMFAAGFALNAYGEKAPL
                     NLRQASMLIVSSFILLSLFGSIPYMYVNPFWNEIDPLSLFVNSFFESASGFTTTGLSM
                     ITQPENLPQSFVLYRSYTQWVGGLSFVYLVMMLFYPERKLIHMRGMIGGGTLRSKQLI
                     ITISVIFSIYTAILSALLYFLGDINNIQDVALILSTVTGGGFVPTSTYVVVENAQQLL
                     VLMAGMIISALPFALHYAIFSKEEHTTKLRPEVFVYIGIILISIPIFTILLSGSITPS
                     LEWLVSAFHIVSVSTTSGFQFINISSISFQAKILLIILMLVGGTAFSTAGGIKVGRLL
                     QIIHKLTKRKTSMDTANRSISSVSSRYNKLYISYEERAEKLRANKAFRESLLVISLFV
                     LLSFITGAVLSYFAEKNFIDSLFESVSALTTTGITTGITTLNLDLVSKTFLIINMISG
                     RFEIIAIFYIFFGILEKYSKGRGIAFDITTVSKITKLKSKMQKKKIY"
     gene            complement(4031..>4260)
                     /locus_tag="VHF08_06025"
     CDS             complement(4031..>4260)
                     /locus_tag="VHF08_06025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068240.1"
                     /translation="KERSKGENKSASIVIAKACVINKLGLLTSSSVDDNDDDVRTLEK
                     QQSSKYKLKLFTLYKSLKTKSMRIMKRKQQK"
BASE COUNT         1511 a          681 c          694 g         1374 t
ORIGIN      
        1 aaggcattgt taataatgca aagctcaatg tcagctctac gataatggca aataacagct
       61 tacataacta tcaaatctgt taatactgaa atagaactca ttctgatagt gcatcaaaga
      121 cagtaaaaat taaaaaatta gcacagaatg gatttacaat ggattagtat tcaaagaatt
      181 gtagaatgat ttgtaataca ggaagtagat ccttatacaa ggccagtatt attatcaaat
      241 catcatctat caatagttta ggttttattg gtgtaacttt aagaaggcaa tctgaaagaa
      301 gttcagacat taattcaaag tctacaattt atttgaatgt gggaatgtat agatgtttag
      361 ctattgtgag ttaataagaa aattatcatt agaagacaag ataacaagat ataaacatta
      421 aacaaagaaa tgtatctaga taactcataa atttacccat aactaagata tgataaatga
      481 tgcctgagga caagcaatta cattatcatc acgatattgt caggatatct cctgccgatg
      541 agcagcagaa tattattgaa ggtgacctga ctatacctaa cattactatt gatgctaaag
      601 gaattgttat atttgctcat ggaagtggaa gcagcagaca tagtccaaga aaccaatatg
      661 tcgctcaagt attaaacaat gcaggtattg ctaccttatt aattgacctt cttacaaaag
      721 aagaggaaaa gatagatgat gtcaccagag agcatagatt caatattagt ctgcttgcta
      781 gacgactcct ggcctccact gattggattt cccaatatcc taaaattcga aatttgaaca
      841 ttggctattt tggtgcaagc acaggtgctg cagcagcatt agtcgcagct tcagaacgcc
      901 caaacgttat cagtgcaatt gtatcacgtg gaggtagacc agatttggct ggtcaacaag
      961 ttctaaatcg cattcaagct ccaactcttt tgattgtagg agaaaacgat aaacaagtaa
     1021 ttcatttaaa tgaaaaggca ttggagcaac ttagtagact agaaaaaaag aagaagattg
     1081 taataatccc aggagccacg cacctttttg aggagccagg tacacttgaa gaagttgcaa
     1141 gacgcgccag tggctggttt gaatgcttct ttctagagaa tagaaaagat gtaggcagtc
     1201 actaaccata agaatccatc ttttttcttc tttttgttta tttttagtct tcttttaatg
     1261 acattagtgg gatattataa aaataaacct gtcatggtta ttattactca ttacatttag
     1321 tttctattgt aatatggaga aaacttataa taatagtagc tgcgatgctc gtattcatgc
     1381 ttataaaaat ggcaaaacca tggagcaatg taaagaagat gccagaaaaa acacagaagt
     1441 actctcatat gaaattttaa agaaaggtga ggtttcgtgg gcaagaatat tagaaataac
     1501 agattacgat gaattagttt acaaattaac attaaaatat cttcgacaga aaggatatga
     1561 cataggcaat aataaaattc caagaatcaa agccaatacc atcacttcct gatgtttgga
     1621 gattgcaata attgattatg aggttgaact cttgtaatgt tatagcatgc agtacatatt
     1681 atgtatgttt gtctctatat cttgtataag catgatattt catattacga ctatatagac
     1741 ctcctataac aagttatggt gtcaaataag aatagtaatt ggtcgttatc aaaagcaata
     1801 gatatagatt cagaagttct tgaaagcaaa ggaaagaaat acaatgatat aggattacta
     1861 atatagtaaa aaaagaaaaa attaacaaaa taagtacggc agtatatacc gataaataat
     1921 tcagtaaatt ttctttttct gcatctttga tttaagcttt gtaatcttac taactgttgt
     1981 aatgtcaaag gctatacctc tacctttgct atatttttct aatattccaa agaatatgta
     2041 gaatattgct ataatttcaa accttccact aatcatgttt attataagaa aagtctttga
     2101 taccaaatcc aaattaagag tagttatgcc tgtagtaatt cctgtagttg ttagagctga
     2161 aacagattca aaaagagaat ctataaagtt tttttcagca aaatagctta atactgcacc
     2221 tgtgataaaa gatagtaata caaataacga tattacaagt agggactctc taaaagcttt
     2281 atttgctcta agtttttctg ctctctcttc atagctaata tataatttgt tatatcgtga
     2341 agatacagaa gatattgatc tattagcagt atccattgaa gtttttctct ttgttaattt
     2401 gtgaataatt tgtaaaagtc ttccaacttt aatcccccca gcagtagaaa atgctgttcc
     2461 accaactaac ataagtatta tcaatagaat ctttgcttgg aatgatattg aagatatatt
     2521 tatgaattgg aaacctgaag tagttgagac acttacaata tgaaaagctg atacaagcca
     2581 ttctaatgat ggcgtaatag aaccgcttaa taatatagta aaaatgggaa tggaaataag
     2641 aataatgcca atatatacaa agacttcagg tcgcaatttt gttgtatgtt cttctttact
     2701 aaagatagca taatgaagtg caaaagggag agctgaaatt atcatgcctg ccataagaac
     2761 taatagctgt tgagcatttt caacaactac atatgtagaa gtaggaacaa aacctccacc
     2821 agtaacagta ctaagtatta atgcaacatc ttgaatatta ttgatatcac caagaaaata
     2881 taacagcgca cttaatattg cagtataaat tgaaaatatg acactaatgg ttataattag
     2941 ttgtttggat ctcagcgtac ctccaccaat cattcctctc atatggatta acttcctttc
     3001 aggatagaaa agcatcatta caagatatac gaaacttaat cctcctaccc attgcgtata
     3061 tgaccgatac aaaacaaaac tttgtggtaa attttctggc tgagttatca tagaaagtcc
     3121 tgttgtagta aaacctgaag cactttcaaa gaagctatta acaaaaagag atagtggatc
     3181 tatttcgttc caaaatggat ttacatacat gtaaggtata ctgccaaaga gacttagcaa
     3241 tataaagcta gaaactataa gcattgacgc ctgtcttagg tttaatggag ccttttctcc
     3301 ataagcattc aatgcaaatc cagctgcaaa cataaatgta agtccaagaa aaattccagt
     3361 agcaggcact gtttcattta gtattgtagc caaaaaagct ggagcaaaaa gaagtattcc
     3421 agcaaattgc attacaaatc caagattacc tatgacaggt ttatagtgag ctcttattac
     3481 tgctctgtag cttctaaatg ttctttctaa tacagatgtt cttatggcat ttgccaattc
     3541 ttcttgtgtt ataatgccaa agatctttat attatcggta actggtatat gcttaattgt
     3601 attaactctc atgagctcaa gtgcctgtct tacagttccc tttgctgata atgatataac
     3661 tggagaagac attatagact ttaataatat ttgatcagaa tcttctcctt tcattacaac
     3721 cttgtctaaa atatcgctat cagttactac tccaaccggt ctgttatctt ttgttacaat
     3781 gatcatttca gctctttgtg aatgcatgtc tctaactgcc attgcaacat taacgtcttc
     3841 atgtagaaca ataaattgtc catgaatata tgataatacc gatcggtcta aaggatctgc
     3901 taccattttt actttgtaat taacaagtgt ccccatggaa taataaataa gttatcatga
     3961 aaactaatgt aggtaaaaat tgaacagggt acatgttaca ataattcaaa attcggattt
     4021 gtagtaatcg ttatttctgc tgttttctct tcattatcct catacttttg gtctttagac
     4081 tcttgtatag agtaaataac tttaatttat attttgatga ttgttgtttt tctagggtac
     4141 gaacatcatc atcattatca tctactgaag aactagttaa caaacctaac ttgttaatta
     4201 cacatgcctt tgcaatgaca atgcttgcac ttttgttttc tcctttactt ctttcttttc
//
LOCUS       DATAAS010000369         2229 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3091379, whole genome shotgun sequence.
ACCESSION   DATAAS010000369 DATAAS010000000
VERSION     DATAAS010000369.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2229)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2229)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2229
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3091379"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            291..740
                     /locus_tag="VHF08_06030"
     CDS             291..740
                     /locus_tag="VHF08_06030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068241.1"
                     /translation="MPKPVRRQNKKQIPKLNRIVRTVSTMQRGIRTGHSSYVEMHEAN
                     NLVTRNIKLRINSMKPFIDKELYEKLISILPAMLNGYEFTLTPNGTVKNSDLDHLLSL
                     DSDITMLLLSLEYMVKQHVNHIPIDEIISLFKELIDERRRLLNDLRA"
     gene            complement(730..1644)
                     /locus_tag="VHF08_06035"
     CDS             complement(730..1644)
                     /locus_tag="VHF08_06035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HEX2068242.1"
                     /translation="MVKDISMFSDRCPRCGKGPMVTDNSSGEMFCGNCGFVVTERIEE
                     TGPEWRAFSKEEHEDRSRAGIPTSLAMHDMGLATIIGPVDKDASGKPLSASMKSTIER
                     LRTWDSRSQVHEPVDRNFRQAFSELDRLKDKLAVGDAVIEKAAYVYRKALEKGLVRGR
                     SISALVAAALYAACRDTETPRTLKDIANASNIKKKDVARCYRLLIRELDLKMPVVDPV
                     KCVARIASKAGLSEKTKRKALEILKKAEEGKISAGKDPMGLAAAALYVACVMNGENKT
                     QKDVAEAAGVTEVTIRNRYKGLKMHLKL"
BASE COUNT          698 a          421 c          345 g          765 t
ORIGIN      
        1 tgttgatatt ttgaattctg ttgataataa tacgtcttaa agatattgac tcattctatt
       61 gtccgtgtcc acgtcaatac aaatttgatg ctcataaaag aaaggcaatt ggtacacata
      121 ttattttata ataacgaaca gaatattctt aggctcaaat catttttaat acatatatat
      181 attttgagat tcaaatttca tttaaatatt gactaaaaca tacaaaggaa gtctttattc
      241 acttttttac gaacgaaagc atttaagagg gccatctcaa tttccgctta atgcccaaac
      301 ccgtcagacg acaaaataag aagcaaattc caaagctaaa tagaattgtt aggacggtat
      361 caacaatgca aagaggcata agaacaggac attctagcta cgtagagatg catgaagcaa
      421 ataatttagt tactcgtaat ataaaattaa gaataaattc catgaagcca ttcattgata
      481 aagagttgta cgaaaaattg atttctattt tgccagccat gttaaatggg tatgaattta
      541 cattgactcc taatgggact gttaagaatt cggatcttga tcatctcctg tcacttgatt
      601 cagacattac tatgcttctt ctgtcactcg agtatatggt aaaacagcat gtcaatcata
      661 taccaataga cgaaataatt agtttgttca aggaactaat agatgaaagg agaagattac
      721 taaatgatct tagagcttaa gatgcatttt aagacctttg tatctatttc tgatcgttac
      781 ttctgttaca cctgcggcct ctgcaacatc tttttgtgtt ttattctctc cgttcattac
      841 acaagcaaca tacaacgcgg cagctgctag acccattgga tcctttccag cagaaatttt
      901 tccttcctct gctttcttta agatctctaa tgctttacgt tttgtctttt ctgagagccc
      961 tgctttgctt gcaattcttg caacacattt tactggatct actaccggca ttttaagatc
     1021 aagttctcta attagtaatc tataacaacg tgctacatcc tttttcttaa tgttacttgc
     1081 attagcaata tctttcaaag ttcgtggtgt ttctgtgtct cgacatgctg catacagggc
     1141 agcagcaact aaagcagaaa tagaacgtcc tctcactagc cctttttcca gagccttcct
     1201 gtaaacatat gcggctttct caattactgc atcgcctact gcaagtttgt cttttaatct
     1261 gtctaattca ctaaatgctt gccgaaaatt ccgatctact ggctcgtgaa cttgactgcg
     1321 gctatcccaa gttcttaatc tttcaatggt acttttcata gaagcggaca acggtttgcc
     1381 tgaagcatct ttatctaccg ggccgataat ggtggcaagg cccatgtcat gcatagcaag
     1441 agaagttgga attcctgcgc ggcttctatc ctcatgttct tcctttgaaa atgcgcgcca
     1501 ttcaggacct gtttcttcta ttctttcagt tacaacaaat ccacagtttc cgcaaaacat
     1561 ctcgccgctt gaattgtccg ttaccatcgg cccctttccg cagcgcggac atctgtcact
     1621 aaacatagat atatctttta ccaatttttt caccataaaa ttagcggcgt tccgccaact
     1681 agtataaata ttttattcta ttatatatgt attgtggtgg taatttttat tataatataa
     1741 ttataaaata atttggttac tattgaatat taaatagctg atattaataa tatctaaata
     1801 ttctttatca aattgaaaaa taatgcaatt caattaggtg ttctaatata attgtttatt
     1861 atctccttgg attttttatc tttctgatta atcagattct actatatttt tgctttgata
     1921 acactgctct atctgtcgtt aatagatatc catatcagaa ggactacagc acggataaat
     1981 cgttatattc ttcaatagtt atcaaatatg aattagtgct attggcaata ataaaaacac
     2041 tgtctttcaa aacaccgtat gtaagtcaat aacattctga ttaaacttaa gtcattattt
     2101 cacttaacaa aatgttaatt aaaggttata gcagtagata ggaacaataa tgcaaaatgt
     2161 tcgacgcata tctagatggt tagtagaaaa tgatcctacg tgggaaaaat caatagattt
     2221 aaaccttgc
//
LOCUS       DATAAS010000370         2588 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3633105, whole genome shotgun sequence.
ACCESSION   DATAAS010000370 DATAAS010000000
VERSION     DATAAS010000370.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2588
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3633105"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..894
                     /gene="tfb"
                     /locus_tag="VHF08_06040"
     CDS             <1..894
                     /gene="tfb"
                     /locus_tag="VHF08_06040"
                     /inference="COORDINATES: protein motif:HMM:NF012600.4"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HEX2068243.1"
                     /translation="NVSYCEQCNSDTVIFDMVSSEYVCSSCGCVANAEIFTSDHNSSY
                     SSQSTYSDRLRTGMPESLAIHHKGLSTLIGIGDTDARGKALEPAQRTKIQRLRTWNNR
                     SQLNDSISRNLEKALKFLNNFGDKLYLSQAVMESAAYIYRKAAIKKLAKGRSTLGLVG
                     AALYAACRETATPKTISDVATVCNLSSKDVMSHYKLILRELSLQMPVLHGPDYVTLIA
                     NRLDLSEKTKREALKIYSHVQQNRISIGKNPRALAGAVIYIAAHNCNEFLRQVEICQV
                     ADISTVSLRKRCKEIKETLEI"
     gene            complement(896..1843)
                     /locus_tag="VHF08_06045"
     CDS             complement(896..1843)
                     /locus_tag="VHF08_06045"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HEX2068244.1"
                     /translation="MDNLYRSSIMADADDFNKVIDAAVNIMYNERKYGSIVGGSITCG
                     FAELKIPQNVVIIGDIHGDLNSLFDILNDIEYEKFLASARNKMIFMGDYVDRGSQSIG
                     VLYTICYLKQKYPHSIVLMRGNHEAPIEFPFSSHDLPFEIVKRYGETGKQIYVNRILP
                     FFRLLLLSTLIQSQALIVHGGVPTQCKVLTTHFKNSIGTAEQNIHDGWMEEVLWNDPR
                     PHIRNEKEWEPSRRGFGRHFGINISKSWLGLTGAKMIIRGHEPCMGFKIDHDGLVVTL
                     FSCKEAYPGFEAAYLYVTTQQWQSIFNGTDLTPYITKLA"
     gene            2101..2406
                     /locus_tag="VHF08_06050"
     CDS             2101..2406
                     /locus_tag="VHF08_06050"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX2068245.1"
                     /translation="MPLNTTGWSNRGWLEIIEFILSMCENGARKTHVMYRCNLNSKQI
                     NEYLNFLLECGMLEKIQERLDSKRSIYRTSDLGRDFIIKYKQLAELFNKTPPPSLKQ"
BASE COUNT          858 a          450 c          462 g          818 t
ORIGIN      
        1 aatgtatctt attgcgagca gtgtaacagc gacaccgtta ttttcgatat ggtttctagc
       61 gaatatgtat gtagttcctg tggttgtgtt gcgaatgctg aaatctttac cagcgatcat
      121 aatagcagtt attcgtctca atctacatat agtgatagat taaggacagg tatgccagaa
      181 tcccttgcaa tacatcataa gggtttatct acattaatcg gaattggcga tactgatgcc
      241 agagggaagg ctctcgagcc tgctcaaaga actaaaatcc aaaggttaag aacgtggaac
      301 aatagatcac aacttaatga ttcaatttcc agaaacttgg agaaggctct aaaatttctc
      361 aataactttg gagataagct gtatctcagt caggctgtaa tggaaagtgc ggcatatatt
      421 tatagaaaag ctgctataaa aaaacttgca aaaggcagat caacccttgg cttagtcgga
      481 gctgcacttt atgctgcctg cagagaaaca gcaacgccaa aaacaatttc agatgtagca
      541 acggtttgta atttatccag caaagacgta atgtctcact acaagttgat tcttagggag
      601 ctttctttac aaatgcctgt tcttcatggg cctgattatg ttactcttat tgcaaataga
      661 ttagatttaa gcgaaaaaac aaaacgtgaa gctttgaaaa tttattctca cgtacagcaa
      721 aatagaattt caattggcaa aaatccaagg gcacttgcag gagccgtaat atatatagct
      781 gcacacaatt gcaatgaatt tctaaggcaa gtagagatct gccaggtagc cgatatatcc
      841 actgtatcct tgagaaagcg ttgcaaggaa ataaaagaaa cactggaaat ttgacttatg
      901 ctagttttgt gatataaggc gttaaatctg tgccattgaa aattgattgc cattgttggg
      961 ttgtgacata taggtaagcc gcttcaaagc ctgggtacgc ctctttacaa gagaatagag
     1021 tcacaaccaa gccatcatga tcaatcttga agcccatgca aggctcgtgt cctcttatta
     1081 tcattttagc accagttaat cctaaccaac ttttagaaat attgattcca aagtgtcttc
     1141 caaaacctct cctagagggc tcccattctt tctcattcct gatgtgtggt cgcggatcat
     1201 tccataaaac ttcctccatc catccatcat gaatattttg ctctgcagta ccaatggaat
     1261 ttttaaaatg tgtcgttagc actttacatt gtgtaggaac tccgccgtgc acaattagtg
     1321 cctgactttg tatcaaagtt gagagaagca atagtcgaaa aaatggtagt attctgttga
     1381 cgtagatttg ttttcctgtc tctccgtatc gttttacaat ttcaaacggc agatcatgtg
     1441 aagaaaatgg aaattcaata ggcgcttcgt gatttccacg cataagtaca atagaatgtg
     1501 gatatttttg ttttaaataa caaatcgtat acaaaacacc aattgattga cttcctctat
     1561 ccacatagtc acccatgaat atcattttgt tccttgctga tgcaagaaac ttttcatatt
     1621 ctatgtcatt gagaatatcg aataatgaat ttaaatcacc atgaatatca ccaataatta
     1681 caacattttg cggaattttc aattcagcaa atccacatgt aattgatcct cctacgatgc
     1741 taccatattt tctttcatta tacataatgt tgacggcggc atcgataact ttattgaaat
     1801 catcagcatc tgccataatt gaggatcgat ataagttatc caagtacagt tatagaatcc
     1861 ccggagaggt taataatttt aacaataatt tataaactgt acaatgagat aataagagaa
     1921 aggagaaact tatttttcgc ctattttccc ttaacgagag aataatgatt gaaaaattta
     1981 aagccgtgat atctacatat gggcacctat tggagatata gaaatgttct atgttctttt
     2041 tggattaaaa agtatgttta gcgttaaaag caatggatcg tgagatactt tcggttataa
     2101 ttgccactta atacaactgg ttggagtaat agaggatggt tagagataat cgaatttatt
     2161 ctttcgatgt gtgagaatgg cgcaaggaag acccatgtta tgtaccgatg caatttgaat
     2221 tctaaacaaa taaatgaata tctgaacttt cttcttgaat gcggaatgct agaaaagatt
     2281 caggaacgac tggattcaaa acgttctatt tataggacaa gcgatctagg aagagatttt
     2341 ataatcaaat ataaacaact tgcagaattg tttaataaga ctccaccgcc atctctaaag
     2401 caataattta ttatagatta tgttatttga ttatatatag agactatact caattttttg
     2461 taattatttt tattcagaat aatattttta ttgtatattt gggatttaaa tcaaatctat
     2521 tatcacatgt tacctaccta tccaatactt atcataatct gaattacaga acgagaacta
     2581 aatgaatt
//
LOCUS       DATAAS010000371         1530 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1609763, whole genome shotgun sequence.
ACCESSION   DATAAS010000371 DATAAS010000000
VERSION     DATAAS010000371.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1530)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1530)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1530
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1609763"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(178..312)
                     /locus_tag="VHF08_06055"
     CDS             complement(178..312)
                     /locus_tag="VHF08_06055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068246.1"
                     /translation="MVKMIGKCDQCGLENVEVSMVKSDRNKDLKLCNQCKPTDGAYGY
                     "
     gene            complement(802..>1530)
                     /locus_tag="VHF08_06060"
     CDS             complement(802..>1530)
                     /locus_tag="VHF08_06060"
                     /inference="COORDINATES: protein motif:HMM:NF036799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068247.1"
                     /translation="ADEDTDIITCVVPRYRTDIIHAIDIVEEVAIGYGVYNLKPTMSA
                     WNSVGQKNSLSIYFDIVRRTLAGLNMLEVVNFSLVNKNSQYELIGLKTPDNVLTVDAT
                     KSKDHEVLRASMIPSLLQSLSHNVHSQYPQKLFEIGKIFYRDDTIKEIWCLAAVIAHN
                     DADFTEIKSIMQTFLKIAFDKDVFTQENANSFFIEGRSARVILDKKYNIGIIGEVTPL
                     AIDNFKIRVPVSAFELNLSRLLGI"
BASE COUNT          474 a          268 c          227 g          561 t
ORIGIN      
        1 attaaagtta ctacctattt ctttagatat ttgtctttta ttaactacca ttcattaaat
       61 tatttgctgt atgcagtcta ttagctttca attttaattc tttctcataa ttaatacttt
      121 ctaattttta aaaatttaat acttattact ttaagtaggg atcactttta tgatcatcta
      181 atatccgtat gcaccatctg ttggcttgca ttggttacag agtttgagat ccttatttct
      241 atctgatttt accattgaaa cttcaacatt ttctagtcca cattgatcgc attttccaat
      301 catcttaacc atatacatat tgtataagaa ataaggattg tatatgtgtc taattgacag
      361 tgaaaatgct gatgaccttt aatgagtatt ctaaatcatc gatctgctat ggatgtagat
      421 tgaaaaacta gtatatacat aggagaatca aagaaggttg ttaggcgtaa ctttgcgcta
      481 atcatgataa ttagaaataa tcatcatcta tattattgta ttttatagat ctgcaattac
      541 cattaatcac aatagactta ctattcatct atacataatc aggagatcta tgtataaaat
      601 gtgccccgcc tctgacccac acgtattcac tggtagccat acacacatgt gtattcctcc
      661 tcgtgtactc tctttaacgg ggtggcatat tgtagtgcgt atgggtgaaa aatgagagcc
      721 atgaataatc atactcttcc attacctctc gcactaataa tatgcaattt acagatgttt
      781 attcacaaat ataaagataa actatattcc aagcaatcgg gatagattta actcaaaagc
      841 cgaaactggt actctaattt tgaaattatc tatagctaaa ggagtaactt ctccgattat
      901 tccgatatta tattttttat ccaagatgac tcttgctgat ctgccttcaa tgaaaaagga
      961 atttgcattt tcctgcgtaa aaacgtcttt gtcgaatgcg atttttagga atgtctgcat
     1021 tatcgatttt atttccgtaa aatccgcatc gttgtgtgcg ataactgctg ctaggcacca
     1081 gatttccttg attgtatcat ctcgatagaa aatttttcct atttcaaata atttttgagg
     1141 atattgcgag tgcacgttat gagatagtga ttgtaataga gagggaatca tagatgctct
     1201 caatacttca tggtccttac tttttgttgc atccaccgtt agaacattat caggtgtttt
     1261 taatccaata agctcatatt gggagttttt gttaacaagg ctaaaattaa caacttctag
     1321 catatttaat cctgctaatg ttcttcttac aatgtcaaaa taaattgaaa gagaattttt
     1381 ctgaccaaca gaattccaag ctgacattgt aggttttaag ttatagactc catatcctat
     1441 tgctacttcc tctacaatat ctattgcatg aattatatcc gttcgatacc ttggaacgac
     1501 acatgtaata atatctgtat cttcatctgc
//
LOCUS       DATAAS010000372         6844 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4181482, whole genome shotgun sequence.
ACCESSION   DATAAS010000372 DATAAS010000000
VERSION     DATAAS010000372.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6844
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4181482"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1148
                     /locus_tag="VHF08_06065"
     CDS             <1..1148
                     /locus_tag="VHF08_06065"
                     /inference="COORDINATES: protein motif:HMM:NF019607.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEX2068248.1"
                     /translation="VIEKEKGTVQRIIDGMMLAEPLLDVNVGRVSERGLLGIAVSKNV
                     TKGIDHHTYVFLFYSETLAKDGGNPVGNRLYRYELVNDKLVNPKLLLDLPTRPGPSHN
                     GGVVKIGPDNNVYVVVGDLNYIRNKKAYTLAQNAVDGPPPDGRGGILRVTQNGEVVGE
                     GGSGVGLLGNEDPLNKYYAYGIRNSFGIGFDPVTGNLWETENGPNHGDEINLVESGFN
                     GGWNQLMGMAADKKGFDPNNDLVDFGGKGKYSDPEFEWIDTVAPTAITFLNSDKLGMQ
                     YENDIFVGSVKEGRIFNFDLNDDRTELVLDNPLDDKVADTNDELEDITFAHGLGIITD
                     IEVGPADGYLYVVSFGNGAIYRIVPGGDSNGTNGVSIPEEEDEEEED"
     gene            complement(1499..3430)
                     /locus_tag="VHF08_06070"
     CDS             complement(1499..3430)
                     /locus_tag="VHF08_06070"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEX2068249.1"
                     /translation="MRLLHLHSDFIEYEPISKEIKDAEENISGSKVRFEDLVVTFIAV
                     ENADDESIAKAAVDEIKKYLDTVKSKKILIYPYSHLSSDLASPKYAYELLKLTERMAK
                     DMKLHVSRAPFGWTKAFNIKVKGHPLAESAKVLTKQTASNIIISGESRGEKNNTANIE
                     YQAQLSTALNLEEKQQSFWYILNPEGELSPMSTYRFKKQEQNLHILANYEIAKKRTAE
                     EVPSHVKLMKKMSIADYEPASDLGNMRFYPKGRLMKSLIEQYVTKKVMEYGGIEVETP
                     IMYDSKHPSMESYFNRFPARQYNIIADNKQLFLRFAACFGQFLMAKDFQISYKHLPLK
                     LYELTRYSFRREKSGELVGLRRLRAFSMPDCHAICRDLNQAKEEFLKRLELSINVINE
                     LGLSTKDDIEMAIRFTEDFYNENKDFINTIVARFGKPIMVEMWKDRFFYFTLKWEFNF
                     IDNSDKAAALSTDQIDVENGSRYNIEFVDEDGSRKNPIILHNSPSGAVERIIYALLER
                     SAKISKAGGIASFPLWLSHTQVRIIPVGKQHTELCEKIATELSSKQIRTDIDDREESV
                     GKKIRESETEWIRYTLVIGDKELQSEKFTVRDRNEKKQRQDVKLEELISEIKSQTNNK
                     PYLPLNLPRNLSNRPQIMV"
     gene            complement(3656..3865)
                     /locus_tag="VHF08_06075"
     CDS             complement(3656..3865)
                     /locus_tag="VHF08_06075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068250.1"
                     /translation="MGRVEKGVNCSIQGCDQTAQRSMSGSKASMALNLDLDSTSKRIY
                     LCKAHYREWKKASKNERENERARWD"
     gene            complement(4246..5514)
                     /locus_tag="VHF08_06080"
     CDS             complement(4246..5514)
                     /locus_tag="VHF08_06080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX2068251.1"
                     /translation="MELEHREALASNAKLPNLSIIIPTYNESENILKLIEAIKSNLPS
                     NIITEIVVVDDNSPDGTGKIVENYINNHTSTDVPSQQQFNFKVDKNQTCMVKIIHRRN
                     KTGLIPAILEGIESSRGEDILIMDADFSHPPETIPRLVEELRQDPNCIVIASRYISHG
                     SIVGWPYKRRVISRGAAKIARHGLNVRNVTDPMSGFFAFPRHVIKNVKFDTKGFKILL
                     EILVKSRDIRVKEVPYTFHDRKSGQSKMNFNVILDYAGAVWQLYRYGQKSKRHIQRKE
                     EKRKSVLFLSKASRFYTVTASGLLINYLLSFMLADNVAYSVKSLSNQWYLQATLIGII
                     ISITSNFFLNKIWTFEDRDLSVIKTLKQYGSFAGISAVGATIQLLLLYLLVVEYGLQY
                     RVSLILAVVIASMSNFLLTKKWTFRENLLD"
     gene            complement(5693..6598)
                     /locus_tag="VHF08_06085"
     CDS             complement(5693..6598)
                     /locus_tag="VHF08_06085"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX2068252.1"
                     /translation="MNRFLVIISAVSLAIVITILYVVLRPIDVAPSDFNFTAAGDWGC
                     TDDTTDTVNNIIDKNPELVLGLGDYSYDEDPADCWLKKVKPINDKMKIAIGNHDMEKL
                     NMYTNHFGLREQYYSFNYNNVHIVALSTEIAYKPFSSQYEFIENDLSRAASDPNIDWI
                     VVYFHKQMYTSPSNHDDYPTLRSTYHPLFNEYGVDLVLQAHNHNYERTFPIKFNSNSP
                     SNPIATTANTDTYTDPDGQIFATIGTGGVSLYAFTDKADHFVKQYEDFGILNIDITNE
                     PQSSSLTGKFYANNGKIIDQFIIYK"
BASE COUNT         2134 a         1162 c         1145 g         2403 t
ORIGIN      
        1 tagtcataga gaaggaaaaa ggaacagtac agaggattat agatggtatg atgttagcag
       61 aacctctcct tgatgtcaat gttggtagag taagcgaaag aggtttgctc ggaattgctg
      121 tgtcaaagaa cgtaactaaa ggtattgatc atcatacata tgttttcttg ttttacagtg
      181 aaactttagc aaaagatggt ggtaatcctg ttggcaatcg tctttacaga tatgaattgg
      241 taaatgataa actagtaaat cctaaactgc ttctagattt accaactaga ccaggacctt
      301 cccacaatgg tggtgtagtc aaaataggtc ctgataataa tgtatatgtt gtagttggtg
      361 accttaacta tattagaaat aaaaaagctt atacacttgc ccaaaatgct gttgatgggc
      421 caccaccaga tggaagaggt ggaatacttc gtgttactca gaatggtgaa gtcgtaggag
      481 aaggaggtag tggtgtaggt ttacttggaa atgaagatcc tctaaacaaa tattatgcct
      541 atggaatacg gaatagtttt ggaattggat ttgatcctgt aactggcaac ctatgggaga
      601 cagaaaatgg accaaaccat ggcgatgaaa ttaatctcgt tgaatcagga tttaatggtg
      661 gatggaacca gttaatggga atggccgctg ataagaaagg atttgatcct aataatgatt
      721 tagtagattt tggaggaaaa ggaaaataca gtgatcctga atttgagtgg attgacacag
      781 ttgctcctac cgcaattaca tttcttaatt cagataagtt aggtatgcag tatgaaaatg
      841 atatttttgt aggaagtgtt aaggaaggaa gaatattcaa ctttgaccta aatgatgaca
      901 ggacagaatt agttcttgat aatccgctag acgataaagt ggcagatact aatgatgaat
      961 tagaagacat aacatttgca catggtttag gtataattac tgatatagaa gttggtcctg
     1021 ctgatggtta cctctatgtt gtttcttttg gcaatggagc aatatataga atagttcctg
     1081 gcggtgattc aaatggcact aatggagtat caataccaga agaggaagat gaagaggaag
     1141 aagattaaca tattagaaag ttattactgc aataccttta ggaacaaaat tttcttctaa
     1201 catttcattc tttaatatta tatcgctata cgttctgaca gttaaagtac cttgaatatc
     1261 tatctctttc taaatatata taaaaaaatc tttagcattc ttacgtctgt aagaaagcat
     1321 tgcgaatagt tctattaaca atattctttc ctataacatt ctaatatatg tttatgagta
     1381 tatagtgata aatggttaca gtcttgctca tccatgcgcc ttgagaaata ttaatagtat
     1441 aattaccaga agatattata catattttac tctactttta ttatcaagga tctattgact
     1501 aaaccataat ttgtggtcta tttgagagat ttcttggaag gtttaatggg agataaggtt
     1561 tgttattagt ctggctcttt atttcgctga taagttcttc taatttaaca tcctggcgtt
     1621 gttttttttc atttctatct cgaactgtaa atttttcact ctgcaattct ttatcaccaa
     1681 tcaccaaagt ataacgaatc cattctgtct ctgattctct aatttttttt ccaactgact
     1741 cctctctatc atcaatatct gttctaatct gtttacttga aagctctgtt gctatttttt
     1801 cacaaagctc tgtatgctgc ttaccaactg gtattatacg gacttgggta tgagatagcc
     1861 atagaggaaa tgaagctatt ccaccagctt ttgaaatttt agccgatctt tccagcaatg
     1921 cgtagattat tcgttctact gcaccgctag gtgaattatg taatatgatt gggttcttgc
     1981 gactaccatc ttcatcgaca aactcaatat tatagcgact gccattttcc acatctatct
     2041 gatccgtaga tagtgcagca gccttgtctg agttatcgat gaaattaaac tcccacttta
     2101 atgtgaaata aaagaatcgg tctttccaca tctcaaccat aatgggcttt ccgaaacggg
     2161 cgacgatcgt atttataaaa tccttgtttt cattgtaaaa atcctctgta aatcttattg
     2221 ccatctctat atcatctttc gtagaaagtc ctaattcatt tatcacattg atcgataatt
     2281 ctaatctctt caaaaattcc tctttggctt gatttaaatc tcgacaaatg gcatgacaat
     2341 caggcatact aaaagctctt aaacgtctta gaccgactaa ttctccactt ttttcccttc
     2401 taaaactgta cctagtaagt tcatacagct ttaaaggaag atgcttatat gatatctgaa
     2461 agtcctttgc catcaaaaat tgaccaaagc aagcggcgaa tctcaaaaaa agttgtttat
     2521 tatctgctat tatattatat tgacgggcag gaaaccggtt aaagtaactt tccatagatg
     2581 gatgtttaga atcatacatt ataggagtct caacttctat acctccatat tccattactt
     2641 ttttagttac gtattgctcg attagtgact tcattaatct accctttgga tagaacctca
     2701 tatttccgag atcggaggct ggctcataat ctgctattga catctttttc attaatttaa
     2761 catgggaagg tacttcctct gctgtccttt tcttcgctat ctcataattg gcaaggatat
     2821 gcaggttttg ttcttgtttt ttgaatctat atgtactcat aggagacaat tccccttcag
     2881 ggttgagaat ataccaaaat gattgctgct tttcttctaa atttagagcc gttgagagtt
     2941 gcgcttgata ttcaatatta gcagtattat tcttctcacc tctgctctca ccagaaataa
     3001 taatattaga agcagtttgc tttgttaaca ccttggcact ttctgccaaa gggtgtccct
     3061 tgactttgat attaaatgcc tttgtccagc caaaaggtgc tcgacttacg tggagtttca
     3121 tgtcttttgc cattctctct gtcaatttta aaagttcata agcatattta ggagaggcaa
     3181 ggtcagaact cagatgggaa tagggataaa taagtatttt tttacttttc acagtatcaa
     3241 gatatttttt tatttcatca actgcagcct ttgctatact ttcatcatct gcattttcta
     3301 cagctataaa tgtaacaaca agatcttcaa atcgaacttt agatcctgag atattttcct
     3361 ctgcatcttt aatttcttta gatatgggtt catattcaat gaaatctgaa tgaagatgaa
     3421 gcaagcgcat ataatttctt gaacagggaa gtagttcagc cgaattaaag gcttttgatt
     3481 atttaactac tgaagagata gtcagaaagg cctgtatatt tctgctgatg aaaagcaaag
     3541 tagaatatga aatatatatt actcctgtta ttgtaatatc ttttcatttg tctatccaat
     3601 tgatcatatt tattttcgat taataaatag tataacgaaa aactcaggat tgtagttaat
     3661 cccatcgtgc tcgttcattt tcgcgttcgt ttttggaagc ctttttccat tctctgtagt
     3721 gtgctttaca aagataaatt cttttactag ttgaatcgag atccaaattt aatgccatac
     3781 tagctttgct tccactcatt gatcgttgag ctgtttggtc acagccctga atactacagt
     3841 taactccttt ctctacccga cccattttat ctggaagtta ctattgaaat ataaaaacct
     3901 gatctaatat ggctatggaa gatgtattat attttaatat ccttaaagat gtaaaaaaag
     3961 ggaggatctt gacaatagat aatttaatat attttgcttg cttctaattg tttccacgac
     4021 acaagaccag gcgataaaga aaagtacatg ccgcggtgtt tcctttaagc tttcaaatta
     4081 aataatataa acaaagtgtt tctctccctt aaccataaca aataaaggac aattttaagt
     4141 acttattaac atgtttttaa actaattaaa aaaaggcgat aatttgaagc atatttttaa
     4201 aatccaatgc aatcaataga ttactctgaa tagtgaatta taaagtcaat ccaataaatt
     4261 ctctcggaag gtccattttt tagtgagtaa aaagttactc atagatgcaa tgacaactgc
     4321 taggattaat gatactctgt attgtaatcc atattctact actaacagat ataatagcaa
     4381 taattgaata gtagcaccta cggcgctgat acctgcaaat gacccgtact gtttcaaagt
     4441 ctttattaca gacaaatctc tgtcttcaaa agtccatatc ttgtttagaa agaagttaga
     4501 agttattgat attattattc caatgagggt agcttgaaga taccactggt tagatagaga
     4561 tttgacagaa tatgcaacat tatcagctag cataaatgat aacagataat ttattagcaa
     4621 tccgcttgcg gtaacggtgt aaaatctgct tgcctttgat aaaaatagca ctgacttacg
     4681 tttctcttct ttcctttgta tatgccgttt tgatttctgt ccgtatctgt atagctgcca
     4741 tactgctcca gcataatcaa gtataacatt gaaattcatc ttgctttggc cagattttct
     4801 atcatgaaat gtatagggaa cttcttttac tctaatgtct ctagacttta ctaatatttc
     4861 tagtagtatt ttaaatccct tagtatcaaa ttttacattc ttaatcacat gtcgaggaaa
     4921 tgcaaagaaa ccagacatag gatcagtaac attgcgtaca ttcaatccat gtcttgcaat
     4981 tttagctgct cctctgctaa taacccgtcg tttataaggc catccgacta tcgatccgtg
     5041 gctaatatat cgggaggcaa tcactatgca attgggatct tgtcttagct cttctactaa
     5101 tcgaggtatc gtttctggcg gatgagaaaa atcagcatcc attatcaaga tatcctctcc
     5161 tctagaagat tctattcctt ctaaaatagc cggaataaga ccagtcttgt ttctcctatg
     5221 gataatctta accatacagg tttggttttt atcaacttta aaattgaatt gctgttgaga
     5281 tggtacatct gtactcgtat gattattgat atagttttca actatcttgc cggttccatc
     5341 aggagaattg tcatcgacta ctacaatttc tgtaataata ttagatggaa gattgctctt
     5401 tattgcttct ataagtttca gaatattttc agattcatta taagtaggta taataataga
     5461 tagatttggc aattttgcat tcgatgctaa tgcttctcta tgttctaatt ccacggtacc
     5521 aatagatttg cattgccatc tattaagatt ttgaatgaaa aatcaaacat tcttataatt
     5581 ttatattctc taaaaataga tatcttgatg gaattataaa aaagaaatag tagattatta
     5641 tcttattgca attataatgt caaatcaact tattttcagt gtaattgtta acttacttgt
     5701 aaataataaa ctggtctatt atctttccat tatttgcgta aaatttgcct gttagtgaag
     5761 atgactgagg ttcatttgtt atgtctatgt tcaagatccc aaaatcctcg tattgtttaa
     5821 caaagtgatc ggctttatct gtaaaagcgt aaagactaac tcctcctgta cctattgtag
     5881 caaatatctg cccatcagga tctgtatatg tatctgtatt tgcagtggtt gctattggat
     5941 tggacggact attgctattg aatttgatag gaaatgtcct ttcatagttg tgattatgtg
     6001 cttgaagtac aagatctacc ccatactcgt taaataatgg atgatatgta cttctcaagg
     6061 taggataatc atcatgattg cttggggacg tatacatctg tttatgaaaa tacacaacaa
     6121 tccaatctat attaggatct gatgctgccc ttgaaagatc attctcaata aattcatact
     6181 gggaggaaaa aggtttgtat gcgatctctg ttgatagtgc aactatgtga acgttattgt
     6241 aattgaatga ataatactgt tctctaagac caaagtgatt tgtatacata ttcaactttt
     6301 ccatgtcatg attgcctatt gctattttca ttttatcatt aataggtttc acttttttaa
     6361 gccaacaatc tgcaggatct tcatcatatg aataatcacc taacccaagt actaattctg
     6421 gatttttgtc tattatgtta tttactgtat ctgttgtatc atcggtacat ccccaatctc
     6481 ctgcagctgt aaaattaaag tcagagggag caacatcgat aggtcgcaaa acaacatata
     6541 gaattgtaat cactatcgcc aaagatacag cagaaataat aactaaaaat ctattcaact
     6601 atgaatctcc tgtctctata catctctata catattttat gcttaaaaat actctataat
     6661 catcattttt agttttatga aataacctcc gtataagcat tatatcttgt tttccaaatg
     6721 attctattag atcctcttga gttgtcctgt tctgttttat cgaatcaatg attaaaaatt
     6781 tagaagatat ggctaaaagt tttcgcagtt gcctaattta gtctcatttt ctgcttgatt
     6841 atag
//
LOCUS       DATAAS010000373         1727 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4181515, whole genome shotgun sequence.
ACCESSION   DATAAS010000373 DATAAS010000000
VERSION     DATAAS010000373.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1727
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4181515"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            434..874
                     /locus_tag="VHF08_06090"
     CDS             434..874
                     /locus_tag="VHF08_06090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068253.1"
                     /translation="MNLETWIALGSFGMAIMFVALINSFYNFLVGPDEKGPERDVAPG
                     PAVYQILSISGVPSIILAGVVFGMRKTDQSRSAATILIVTGILLIFGMVVAVIMLVPK
                     INEQYIEGGINTIPYIFIIAGVGVVGLGGYLFYKNYKKTTSRFV"
     gene            1338..>1727
                     /locus_tag="VHF08_06095"
     CDS             1338..>1727
                     /locus_tag="VHF08_06095"
                     /inference="COORDINATES: protein motif:HMM:NF014670.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HEX2068254.1"
                     /translation="MIPDKGNRPILWEEMSYKDIEKLTKTMNMVIVPIGACEQHGPHL
                     PLAVDTIDCYEIAKRVSAKTGVPVVPPLMYGCSQSHGNFLGTLSIRPETMIRMISDIA
                     EWLYRSNIRKILLLNGHMWNWGPLYSAR"
BASE COUNT          627 a          226 c          321 g          553 t
ORIGIN      
        1 atataatatt ttttttgttc attcctttgt taatataaag aaggtctatt tataattatc
       61 aaactttgtg cataataaat ataaaattta attataataa taatcatata ttgatagaag
      121 aggtggtgtg tctatagctt ccagaattga tatatagtta agaacgtatt atagattagt
      181 atgtgttttc gtatactttg aaccaataaa atatagaata tattgatcta tgaatattaa
      241 gttatcagag tctttcttag attgaagcca ttattattca aagtatttaa tagatctact
      301 acgactaata aatgtctaaa aatctgaaat gatatggatg gagtgttcat aattctatga
      361 ataaaggtag aaactagcgt aggcatataa ataaataaca acaaagataa ataaaaaatg
      421 atataatttt aatatgaatc tagagacgtg gattgcactt ggatccttcg ggatggcaat
      481 aatgtttgtt gcattaatca attcttttta taattttcta gttggcccag atgaaaaagg
      541 cccggagcga gacgtagccc caggcccagc cgtgtatcaa attctttcta tttcgggtgt
      601 tccaagcata atacttgcag gagttgtctt tggaatgaga aaaacagatc agtcaagatc
      661 tgctgctact attcttatag taacaggtat tttgctgatc ttcggaatgg ttgtggctgt
      721 gataatgtta gttccaaaga tcaacgaaca gtatatagaa ggcggaatta atacaatacc
      781 atatatcttt attattgcag gtgtaggagt agttgggctt ggaggatatt tattttataa
      841 aaattacaaa aagactacgt caaggtttgt ttgacgatta ttattgttga aagagaagaa
      901 aagaagtcaa tagatgaatt ttttattatt attaaattac gtagacataa acagagcaat
      961 tcagcaaaga aataaagcaa aattactgga ggaatatatc ggtatgatat gtgttaatta
     1021 cacttattct cctaattctc tactagcaag atacagatct ctttggcgtg tctagtaagt
     1081 atattcaaga tagaaagtaa ttaaatatag ataagcgatg gcaacttgat aataaaatag
     1141 ggtataagta cagctcatgg tcagtttagt gggccactag atttagcagt agaacttatg
     1201 ccatagtagt gtatatgtaa aacaacaata gaaacaagta gaggatgaaa ataataatat
     1261 tggctatacc gatgatgatt acaacgatac cattaccaac aatattcttt aaaatgtcat
     1321 gagatgatga caaaataatg attccagata aaggtaatag acctatctta tgggaagaga
     1381 tgtcatacaa agatatagaa aaactaacaa aaactatgaa tatggtaatt gttccaattg
     1441 gcgcttgtga acagcatggt ccccatttac cactggcagt ggatacaatt gactgttatg
     1501 aaatagcaaa aagagtatct gctaaaacag gagtacccgt agttcctcct ttgatgtatg
     1561 gatgttcgca aagtcatggc aactttctag gaacattatc cattagacca gagactatga
     1621 taaggatgat atctgatatt gcagaatggc tttatagaag caatattcga aagatccttc
     1681 ttttaaatgg tcatatgtgg aattggggtc ccctatactc agctaga
//
LOCUS       DATAAS010000374         2626 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2570820, whole genome shotgun sequence.
ACCESSION   DATAAS010000374 DATAAS010000000
VERSION     DATAAS010000374.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2626)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2626)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2626
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2570820"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            188..1312
                     /gene="phaC"
                     /locus_tag="VHF08_06100"
     CDS             188..1312
                     /gene="phaC"
                     /locus_tag="VHF08_06100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class III poly(R)-hydroxyalkanoic acid synthase
                     subunit PhaC"
                     /protein_id="HEX2068255.1"
                     /translation="MIKETLVREKTTNIPEKTSEDGKKIDIPTFIEEIKEIYHKLEKT
                     KAVLHLAGDIEVGITPHEVVAETRMYRLLHYRPLFSRTAKTPLLIVYALMNKSYIFDL
                     QPDKSWIRNLLAQGFDVYLIDWKAPTNVDKFVSFDDYVNWYIDDCIDIIRRKNHVDKV
                     TLHGYCLGSTMSVMYTALHQEKIRNLVAIAPIIDAESDTTVLGNLARHFDANKTFDSI
                     GNLPYEQLYAAFSILKPFKQGVNKYINLVENIDNENFVQNFLRIEKWIFDTPPIAGET
                     YRQWIEDIQQKNLLVKNEMKIGNEIIDLSNIRVPLLNIVAEEDHLVSPPCSVPLNDSV
                     SSIDKRLMRFHTGHVGLIASSYSQNNVLPKVGQWLKARSQ"
     gene            complement(1391..1699)
                     /locus_tag="VHF08_06105"
     CDS             complement(1391..1699)
                     /locus_tag="VHF08_06105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HEX2068256.1"
                     /translation="MSDIFRADDTTDAFKKAVEKGTEVQRDIFRQYSATQQDIMQNFL
                     SMLQGLTYYYAMFKTTVQTGGRISIPEAERQALNIEEGDLVQVIVIPIERKRKSAQEG
                     "
     gene            complement(1752..2570)
                     /locus_tag="VHF08_06110"
     CDS             complement(1752..2570)
                     /locus_tag="VHF08_06110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2068257.1"
                     /translation="MSDQNIPMKVSYVNGYGIRYFDYDKVINQSNDSKDLILLHGLGA
                     SAERWLRVIPDLTKHFRVIVPDIIGFGYSDKPTVEYTMDFFIKFFKDFLENLNIDKLN
                     IVGSSFGGHLATEFAIRYDNRIEKLVLAAPAGMMRSSTHHLDQYIMAALYPTYENALR
                     AFTQMAYDPSIVTEDTIKDFVNRMRLPNSKYAFMSTLLGMRDSPRLPGRLSNILTPTL
                     LVWGDNDKTIPLQYSRGYDEIPHSTLVVISNCGHTPYVEKPIEFNREILKFLED"
BASE COUNT          870 a          467 c          441 g          848 t
ORIGIN      
        1 aatgttatta atcttattct aagcattatt cttattttat catagatgcg tagaattaaa
       61 gacatttaag gttagtatcc tttctaataa agtataataa catgaataaa tatacaagta
      121 ataacctact ctctaaagtc atggatagga tgactgacat atgatgcagc aggaggttta
      181 agattaaatg ataaaggaaa cactagtgcg tgaaaaaact acaaatattc cggagaagac
      241 aagtgaagat ggtaaaaaga tcgatatccc gacattcatt gaagaaatca aagagattta
      301 tcacaagtta gagaaaacta aggccgtact tcatcttgca ggtgatatcg aagtcggtat
      361 caccccacac gaagtagtgg cagaaacaag aatgtacagg cttttacatt atcgtccgct
      421 attcagtaga accgcaaaga caccgctact gattgtatat gctttaatga acaagtcata
      481 tatcttcgat ctgcagcctg ataagagctg gattcgcaat ttgttagccc agggctttga
      541 tgtatacctt atagattgga aagcaccaac aaatgtagac aaattcgttt catttgatga
      601 ctacgtcaat tggtacatag atgattgtat agatattatc agaagaaaga atcatgtcga
      661 caaagtaact ctacatggtt attgcttggg ctcaacaatg tccgtgatgt acactgcttt
      721 acatcaagaa aaaattagaa atctagttgc aattgcaccc ataattgatg ctgaaagcga
      781 taccaccgtc cttggaaatt tggccagaca ttttgatgct aataaaacgt ttgattctat
      841 tggtaattta ccttatgagc aattatatgc agccttttcc atcctaaagc catttaaaca
      901 aggagtaaat aaatacatta atcttgttga gaatatagat aatgagaatt ttgttcagaa
      961 tttccttaga atagagaagt ggatttttga tacaccacct attgcaggag aaacatacag
     1021 acaatggata gaagacatac aacagaagaa ccttctcgtc aagaacgaga tgaagatagg
     1081 aaatgagatt attgatctat caaatattag agttcctctt ctaaatatag ttgcagaaga
     1141 agatcatctt gtatctccac catgtagtgt accactaaat gactctgtat cgagtattga
     1201 caaacgatta atgcgctttc atacaggtca tgttggactt atagctagta gctattccca
     1261 aaacaatgtt cttccaaaag ttggccaatg gctcaaagca cggtcacaat agcctgttaa
     1321 acttgtttat gtgaaacgtc taacctaggg ctacgataat aactatattt tttatatagg
     1381 tattttagga ttatccctct tgggcagatt ttcgttttct ttctatcggt attactatca
     1441 cttgaaccaa atcgccttct tcaatattca atgcttgtct ctcagcttct ggaatagaaa
     1501 ttctgcctcc agtttgaaca gtagtcttga acattgcata gtaatatgtc aagccctgaa
     1561 gcatagacag aaaattctgc atgatgtcct gctgtgtagc agaatactgc ctgaaaatgt
     1621 ctctctgaac ttctgttccc ttttccactg cttttttaaa tgcatcagtt gtatcatccg
     1681 ctctaaagat gtcactcatt tgaatgaatt tacactgtca tttatttaac gttagtgtta
     1741 aactaatgct tttaatcttc aagaaatttt aatatttccc tattgaattc aataggcttt
     1801 tcaacataag gtgtatgacc gcaattgctt attactacaa gagtactatg tgggatttcg
     1861 tcatatcctc ttgaatattg caatggtatc gtcttgtcat tgtctcccca taccaacaat
     1921 gttggtgtaa ggatatttga taacctgcca ggaagtctag gcgaatctcg cattccgagc
     1981 aatgttgaca taaatgcata cttagaattt ggaagtctca ttctgttcac aaaatccttg
     2041 atagtatctt ctgtaacaat actgggatca tacgccattt gcgtaaatgc tctaagtgca
     2101 ttttcataag taggatacaa tgctgccata atatattgat caagatgatg agtagacgat
     2161 ctcatcattc ctgcaggcgc agctaaaact aatttttcta ttctattatc atatctgatt
     2221 gcaaattctg ttgctaaatg tcctccaaat gaggagccaa ctatattcag tttatcaatg
     2281 tttagatttt ctaaaaaatc tttaaagaac tttataaaaa aatccatagt atattctact
     2341 gtaggtttgt cactatatcc aaaaccaata atatcaggaa ctattactct aaaatgctta
     2401 gttaaatcag ggataacacg taaccatctt tcagcagagg ctcctaatcc atggaggaga
     2461 attagatctt tactatcatt tgattgatta attaccttgt catagtcaaa ataccttatt
     2521 ccgtaaccat taacatagga cactttcatg ggaatatttt gatctgacaa atacgttcta
     2581 caaatacagt aattactgta cctgatttaa tatgttatca tttaag
//
LOCUS       DATAAS010000375         2236 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_404811, whole genome shotgun sequence.
ACCESSION   DATAAS010000375 DATAAS010000000
VERSION     DATAAS010000375.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2236)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2236)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2236
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_404811"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            30..1115
                     /gene="moaA"
                     /locus_tag="VHF08_06115"
     CDS             30..1115
                     /gene="moaA"
                     /locus_tag="VHF08_06115"
                     /EC_number="4.1.99.22"
                     /inference="COORDINATES: protein motif:HMM:TIGR02666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEX2068258.1"
                     /translation="MTVKLNEEEEIGNKLQLEKNPALIDSFGRIARKLRISLTDRCNM
                     RCMYCMPPGDVQWFQNEDILDYDEIIRLVSIMANFGIEKIRLTGGEPLLRPKLEDLII
                     PLTRITGIKSISMTTNGLLLGDKVKQLKDAGLDSVNISLDSFKANRFKAITGIDGVNK
                     VIASIYAADKAGLKIKINTVVIRGWNDDEIVAFADFARNSGYTIRFIEFMPLDGSGIW
                     QPNLVFSKKEIVEIIIKNIMEIVPLHNYHNNSNDSDNIPDNTDPAMLYSFVDGKGTIG
                     FIPSITEPFCGNCDRIRLTSDGRLLTCLFENPGYDLRTVLRSGKSDYYIKKQLIENIK
                     KKPEGIIKSIKTKTLKPSLNAMHTIGG"
     gene            1121..1417
                     /locus_tag="VHF08_06120"
     CDS             1121..1417
                     /locus_tag="VHF08_06120"
                     /inference="COORDINATES: protein motif:HMM:NF014636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEX2068259.1"
                     /translation="MTINGKVDVTAIRIKLFASAKEIVGRGNSEITLEFREETKITFT
                     ELRKRILQTYPKLAQIPFVFAINYKIADESTTNTANTTITSSDEIALLPPISGG"
     gene            1431..1859
                     /locus_tag="VHF08_06125"
     CDS             1431..1859
                     /locus_tag="VHF08_06125"
                     /inference="COORDINATES: protein motif:HMM:NF014448.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEX2068260.1"
                     /translation="MISITQEPIDISKILVSSEDSSAGATVLFIGSVRDHNDSKKVSE
                     IYYEAYEKMAENTLLEIEDQVSKKWCVKKFVAIHRIGNLKVNEISVAIAISTEHRQDA
                     FEACRYTIESIKTTTPIWKKEISDSGTATWKDGVLPSVKK"
     gene            1862..>2236
                     /locus_tag="VHF08_06130"
     CDS             1862..>2236
                     /locus_tag="VHF08_06130"
                     /inference="COORDINATES: protein motif:HMM:NF014070.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006777 - Mo-molybdopterin cofactor
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HEX2068261.1"
                     /translation="MVNEVMSGRGDRRGAGMFDVADKSDTLRLATAQAVVRISPLTLK
                     LIKEGKSPKGNIFDAARIAATMAAKRTSDLIPYCHPIPIDDVKVDVLLKDDYFIEIKV
                     QVKTVWKTGVEMESLTAACVASL"
BASE COUNT          841 a          321 c          451 g          623 t
ORIGIN      
        1 tcttgagcaa atagaacaag tggaaaaaca tgacagtaaa attaaatgaa gaagaagaaa
       61 ttggcaataa attacagcta gaaaaaaacc ctgcacttat tgatagtttc ggcaggattg
      121 caagaaagct gaggatctcg ctgacagata gatgtaatat gcgatgtatg tattgcatgc
      181 caccaggtga cgttcaatgg tttcaaaatg aggatatttt ggattatgat gagataatta
      241 ggcttgtttc tattatggca aattttggta tagagaaaat aagactgaca ggtggagagc
      301 cacttctaag accaaaatta gaagacctca ttatcccgtt aacaaggata actggcataa
      361 aatctattag tatgacaact aatggtctgc tgcttggaga taaagttaaa caattaaaag
      421 atgcaggact tgatagtgta aatattagcc tagattcatt taaagctaat aggtttaagg
      481 ccatcacagg tatagatggt gtcaataaag tcattgctag tatctatgca gcagataagg
      541 ctggattaaa gataaaaatt aacacagtag taataagagg ttggaatgat gatgaaattg
      601 tagcttttgc tgactttgca agaaatagtg gatatactat acgatttatt gaatttatgc
      661 cattagatgg cagcggaata tggcagccaa acttggtttt tagtaagaaa gaaattgttg
      721 aaataataat taagaacata atggaaattg tacctttgca taactatcac aataatagta
      781 atgatagtga taatatcccc gacaatacag atccggcaat gctttactcc tttgtcgatg
      841 gcaaaggaac aataggattt attccctcta ttactgaacc tttttgtggt aattgtgaca
      901 gaattaggtt aacttctgat ggtagattat taacttgtct ttttgagaat ccaggctatg
      961 atcttagaac cgtgttacgc agtggaaagt ccgattatta tattaaaaaa cagttgattg
     1021 aaaatataaa gaaaaaacct gaaggcataa ttaagtctat aaagacaaag acactaaaac
     1081 catcattaaa cgcaatgcac acaataggtg gttaattatc atgacgatca atgggaaagt
     1141 tgatgtaaca gccataagga taaagctatt tgcgtcagct aaagaaatag tagggagagg
     1201 aaatagcgaa ataacattag agtttagaga agagacaaaa ataacattta cggagcttag
     1261 aaaaagaatt ttgcaaactt atccaaagct agcacagatt ccatttgtat ttgcaattaa
     1321 ttataaaata gccgatgaat ccacaaccaa tactgctaat accactataa catcatctga
     1381 tgaaatagca cttctgccac ctattagtgg aggttagctg ataataatat atgatctcca
     1441 taactcaaga accaattgac atttctaaga tactagtaag ttctgaagat tcgtctgctg
     1501 gtgcaacagt actattcata ggatctgtaa gagatcataa tgattcaaaa aaagtgtctg
     1561 aaatttatta cgaagcatat gaaaaaatgg cagaaaatac attattagaa attgaagatc
     1621 aggtatcgaa aaagtggtgt gtaaaaaaat ttgttgcaat acatagaatt ggcaatctca
     1681 aggtcaatga aataagcgta gcaattgcta tatctaccga acaccgtcaa gatgcttttg
     1741 aagcttgtag atatactatc gagagcataa aaacgacgac gcctatatgg aagaaagaaa
     1801 tatcagattc aggaactgca acatggaaag atggtgtatt accttctgtt aagaagtaag
     1861 gatggtaaat gaagtaatgt caggtagagg agatcgaaga ggagcaggta tgtttgacgt
     1921 tgctgataaa tcagatacat tacgactagc aactgcgcag gcagtcgtaa gaatatctcc
     1981 tttaacatta aaattaatta aagaaggaaa atcaccaaaa ggcaacattt ttgatgccgc
     2041 aagaattgca gcaaccatgg ctgccaagag aacttctgat ctaataccat attgccatcc
     2101 tatcccaata gatgacgtaa aagtagatgt attgttaaaa gatgattatt ttattgagat
     2161 caaagtacag gtaaaaacag tgtggaagac aggtgtagaa atggagtctc tgactgctgc
     2221 ttgtgttgct tcgctg
//
LOCUS       DATAAS010000376         2500 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4183538, whole genome shotgun sequence.
ACCESSION   DATAAS010000376 DATAAS010000000
VERSION     DATAAS010000376.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2500)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2500)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2500
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4183538"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(706..1680)
                     /locus_tag="VHF08_06135"
     CDS             complement(706..1680)
                     /locus_tag="VHF08_06135"
                     /inference="COORDINATES: protein motif:HMM:NF024212.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2068262.1"
                     /translation="MFSWANLPRSHLLTVSSLITLYTYEYIVTNIIQEKEFTVESTLE
                     GSTTIVDTAATTINSEFENKKDTTISSANNSKSKQDLIQNEEQEEKSNNIDDINRNSL
                     STNDFHNNDTKILSFLNQETGANYSFKGLLRKLNLHQQSLSRALSRLEDLGLIEKSSL
                     GYKLSKNGESIMTLSTKSNVEKRIGALEEGEEEEEVEKKKNGYVQLLQTYLPIDIKSY
                     EIVHALIGKWFNNLRWIGMIESETGEYMLQWINDNNTFQIILRVISKYLIIETNANSD
                     KEKVEAMIGSYRIFEQITKILRIKLEGVGVTAHILNTSNYYKIPEFNN"
     gene            1664..2050
                     /locus_tag="VHF08_06140"
     CDS             1664..2050
                     /locus_tag="VHF08_06140"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2068263.1"
                     /translation="MAQENINLWSMKGMKCCPIDNTFKLIGKKFTVLIIRNMMKNQTR
                     FNQFIDSIDGINPKILSTRLKEMEKSGLIQRKVYAETPIRIEYFLTEKGRALKSILDQ
                     MASFSMQYCAKDVFNDAKPRILQQNV"
BASE COUNT          835 a          366 c          397 g          902 t
ORIGIN      
        1 caagaagagt cttggccttg agcatataat acatactcat aatgcattag aagatgcaaa
       61 agaacaatca ataattttta aggaaatgat gattgagtta ggataatact gaatttttta
      121 ttgtttgctt ttttatattt aactttgtga tactcttact ttgaatttag atattgttgt
      181 catatcagaa gaaacattat gcccaaaaca aatacggtag atgatttaat taatttaaaa
      241 acttataatt tttccacatt gaaaagacat aaacctatct tcttctatat attaaaatat
      301 agataattac agtatatcgc aagtgtagaa attgaaaggc attataattt acaaaggaga
      361 atactgaaag ttcgagctaa aagattgaga gacaaaatac tgaatggtat aaaatacata
      421 ttagaacttt atagccaagt tcacaagtca accaaaaatt tcaaaaaatt gcaggtcagt
      481 cttgataatg taaatagggt attaggacta ttaagagaaa gctttacact acttgataaa
      541 ggttcccttc atgaagggtg gtggtagcag tagtcggcag caactggtgg ttcgctgttc
      601 tgtaatagac caataattat tgaggaagca aacaaacaac tcgttaacat ggactaaatc
      661 aaattatcca tgctaatatc tgttttatgt tagttagtat agttcctaat tgttaaattc
      721 aggtattttg taataattgc tagtatttaa tatatgggct gtgacgccta caccttctag
      781 tttaatgcgt aatattttcg taatctgctc aaatattcta tatgaaccaa tcattgcttc
      841 aactttttct ttgtctgaat tagcattagt ttctattata agatacttag atattactct
      901 taggatgatc tgaaatgtgt tattatcatt gatccattga agcatatatt caccagtttc
      961 actttcaatc ataccgatcc atctgagatt gttaaaccat tttccaatta atgcatgtac
     1021 tatttcataa gactttatat ctattggaag atatgtctgc agcagttgta cgtatccatt
     1081 ctttttcttt tctacctctt cttcttcttc accttcctct aatgctccta ttcttttttc
     1141 cacattactt tttgttgata atgtcattat tgattctcca tttttgctta acttgtaacc
     1201 aagagatgat ttctcgatca atcccagatc ttctaaccta ctcaaagccc ttgataggct
     1261 ttgttgatgg aggttcaatt tccgtaacaa acctttgaat gaatagtttg ctccagtttc
     1321 ttgatttaga aatgataaaa tttttgtgtc attgttatga aagtcattgg tagataatga
     1381 atttctgtta atgtcatcaa tgttattgct cttttcttct tgttcttcat tctgaattaa
     1441 atcttgtttg gacttgctat tattagcaga agatatagta gtgtcttttt tattctcaaa
     1501 ttcgctgtta atagtcgtag cagcagtatc aacaatagta gtacttcctt ctaatgtgga
     1561 ttcgactgta aactcttttt cttgtatgat gttggttact atatattcgt aagtatataa
     1621 agtaataagt gatgatacag ttagtaggtg cgatctaggt aagttggccc aagagaacat
     1681 taatctatgg agtatgaaag gtatgaagtg ttgcccaatt gataatacat tcaaactgat
     1741 tggcaaaaaa tttactgttc tgataattcg caatatgatg aaaaatcaga ccaggtttaa
     1801 tcaatttatc gattctattg acggaataaa tcccaagata ctttctacaa gattaaagga
     1861 gatggaaaag agtggattaa tacagcgaaa ggtatatgct gaaacaccaa taagaattga
     1921 atattttcta acagaaaaag gtagagcatt gaaatctatc ttagaccaga tggcttcatt
     1981 ttctatgcag tattgtgcaa aagatgtgtt taatgatgca aagccaagaa tcttgcagca
     2041 aaatgtttaa tacataaaca tatagctttc attatcttca tcagctttgc aaacttatca
     2101 aagtttcatc tgctataact gcttcatcac ttttgaatta aaatacgcat atgacctatt
     2161 atacgtaaaa ctgaatttat atacagaaaa aaagatgtga taatagtaca aacagtgatt
     2221 catggtatga tgtatggtat catccaactt gtctgttttt tagactttag ggatgaatgg
     2281 tttaaccatg cagaattgtt ggaccagcta tagaacattt atcacaaaaa ttgggtaata
     2341 aataaaagga gcaaaactaa atgttcaata tatagtgttt tagatacatt attgtatatg
     2401 ccccttttta ttcaaaatgg tttcagaaaa tacatgtaca ataaatttca gtattaaatg
     2461 ggcgttttct tataaactat gttgctgctt gctgttatat
//
LOCUS       DATAAS010000377         1851 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3637896, whole genome shotgun sequence.
ACCESSION   DATAAS010000377 DATAAS010000000
VERSION     DATAAS010000377.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1851)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1851)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1851
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3637896"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            54..467
                     /locus_tag="VHF08_06145"
     CDS             54..467
                     /locus_tag="VHF08_06145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068264.1"
                     /translation="MMNTTTTAIRLNDFDVDSKIHSLLTHAITNLKSYDSDNFNKYLS
                     LWRAYIDIEYAILVLKLSYNHIETKQQGRFKKTNIKNVTGRKILMKPKDCNHEIKRLK
                     SVLRHLDFQDKKSLLTELRSNRDLLKNWLQKGEFQ"
     gene            complement(534..1538)
                     /locus_tag="VHF08_06150"
     CDS             complement(534..1538)
                     /locus_tag="VHF08_06150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HEX2068265.1"
                     /translation="MPCIVIVGGFYGDEGKGKVIAYLAKKDNCSIAVRGGVGPNAGHT
                     FVDEGKMYKVRMLPSAALNRSTRLLIGPGVLINPKILLKEIEMFNASDRTFIDTQCGI
                     IDQKHIEKDSLEDHLKGFIGTTGSGTGPANADRAFRLLKLAREVEALSLYLEDVSSSV
                     NYSLENKENVIVEGTQGTFLSLYYGDYPYVTSKDVTASGICSDVGIGPKKVDEVLVVF
                     KSYVTRVGGGPLQDEVTREEAEKRGWLEYGSVTGRERRSSPFDMNLAKKAIRLNSATQ
                     IAITKLDVIFPETRGIREFNKLSEKAKEFIQNIEAETGVKVILIGTGAELNDIIDRRI
                     "
     gene            1641..>1851
                     /locus_tag="VHF08_06155"
     CDS             1641..>1851
                     /locus_tag="VHF08_06155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068266.1"
                     /translation="MSFDQNTSRDILQIVSNLPDFLRKPIILKKLQEFYSLNEGGKYE
                     TISLILRGTSSVEPVKLYPLIKTWLN"
BASE COUNT          590 a          379 c          278 g          604 t
ORIGIN      
        1 ttaaataaat gctattaaaa tcatccgcaa gcttagaggt taacaattat ttaatgatga
       61 ataccacaac aacagcaata agattgaatg actttgatgt cgatagtaag attcattctt
      121 tattaactca tgcaataaca aatcttaaga gttatgattc agataacttt aataaatacc
      181 tgtcgttatg gcgcgcttat atcgatatag aatacgcaat cttggttttg aaattaagtt
      241 acaatcacat tgaaactaag caacaaggaa gatttaagaa aacgaatatc aaaaacgtaa
      301 ctgggagaaa gatactaatg aaaccaaaag attgtaatca tgaaatcaaa cgattgaaat
      361 ctgttctccg tcacctagat tttcaagata aaaaatcact acttactgaa ttgaggtcaa
      421 atagagatct gctaaaaaat tggctgcaaa aaggggagtt tcaataatat aatataatat
      481 gatataatat gaattttaac atcaagttct atatgctcaa gtgctctcat tggttaaata
      541 cgacgatcta ttatatcatt caattctgca ccagttccta taagtatcac ctttactcct
      601 gtctctgcct ctatattctg aataaattct tttgcttttt ctgataactt gttaaactcc
      661 cttatacctc tagtttctgg gaaaatgaca tcgagcttag tgattgctat ctgtgtcgca
      721 ctattcaatc ttatggcttt ctttgctagg ttcatatcaa atggcgaaga tcttctctcc
      781 ctgcctgtta cacttccata ttcgagccat cctcttttct ctgcttcctc acgagtaacc
      841 tcatcctgca atgggccgcc tccaacacgt gtaacatagg atttgaatac aaccaagact
      901 tcgtctacct tttttggccc aatacctacg tcagaacata ttcctgacgc agtcacgtcc
      961 tttgatgtta catatggata atcaccataa tacagagata gaaatgtacc ttgtgtaccc
     1021 tcaacgatta cattttcttt gttttccaag gaataattaa cagaggaact cacatcctca
     1081 agatacaaag atagcgcttc aacttctcga gcaagtttta ggagtctaaa ggccctatca
     1141 gcatttgccg gacctgttcc gcttcctgta gtgcctataa agcctttaag atggtcctct
     1201 agactatctt tttctatgtg tttttgatca attatgccac attgtgtgtc aataaacgtc
     1261 ctgtcacttg cattaaacat ttctatttct tttagtaata tctttggatt gatcaaaaca
     1321 cctggaccta tcagcaatcg cgtcgaacgg tttaacgcgg cgctaggtaa catcctaacc
     1381 ttgtacattt taccttcatc aacgaatgta tgtccagcat tgggtcctac accacctcta
     1441 accgcaattg aacaattatc ttttttagca aggtatgcta ttacttttcc cttgccttcg
     1501 tctccataga atcctccaac tattacaata cagggcatat aaaatccgtt ctgagcagta
     1561 ggtatttaat tctagttttg ctagaatagc atgtttaacc tttttttaag cttttatagc
     1621 gatatatagg attaaaatta ttgtcattcg atcaaaacac ttctcgtgac attcttcaaa
     1681 tagtttcgaa ccttccagac ttcttaagaa agccaattat tttaaaaaaa ctccaagaat
     1741 tttattcact aaacgaaggc ggcaaatatg aaacaatatc tctgattcta agaggaacca
     1801 gctcggtcga accagtcaag ttatatccat tgataaaaac atggctgaat a
//
LOCUS       DATAAS010000378         1650 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4184461, whole genome shotgun sequence.
ACCESSION   DATAAS010000378 DATAAS010000000
VERSION     DATAAS010000378.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1650)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1650)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1650
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4184461"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(285..428)
                     /locus_tag="VHF08_06160"
     CDS             complement(285..428)
                     /locus_tag="VHF08_06160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068267.1"
                     /translation="MSGIKDKIENAVDKMKAGTKATGKKTADTDRDTETEYRKEEIKE
                     KLD"
     gene            complement(1126..1386)
                     /locus_tag="VHF08_06165"
     CDS             complement(1126..1386)
                     /locus_tag="VHF08_06165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068268.1"
                     /translation="MSFSERNTIFKPILSAGIIIIVFGGVCLWISQIIQLKEEGEGFI
                     IIGWRFIIGGIAAVAFAFLWRYFVYIRPVRKRSKKFDDWYKP"
BASE COUNT          535 a          265 c          215 g          635 t
ORIGIN      
        1 tatgaacact tgactgatgt gaagagagta tgtgatgact acctaacgag ttaacaataa
       61 taaaaataaa atgtgataat tactgtttcg cctattatga gatcttatca tttgagtttt
      121 ttattgactt tatagacaaa atatatgtcc taattgtatt gaaagagaat ttgccagaaa
      181 acaactgcct tatctcagag ataagaattt cttgatttat tctatagcct gaaagttagt
      241 cgccgttctg aaaaggaata taaaagaaat aatatattga gaaattaatc tagtttctct
      301 ttaatctctt cttttctata ttctgtctct gtatctctgt ctgtatcagc ggttttcttt
      361 cctgttgcct ttgtacctgc tttcattttg tctactgcat tctctatctt gtcttttata
      421 cctgacatgt tgatatttag aagaaaaaca tgtaatataa ttagatcgat agattatatc
      481 ataagggatg ctagactcaa aagacatgtt attatcatta tagctgataa ccttgtacac
      541 tttgatattg ctctactatg ctatttggta tattatccta gtattactag ttgaataatg
      601 acttattcac atgcaaattc tagtgtatac acaacaataa caaacacgat aattcactct
      661 actcctgttt ataatcaagt tattactcta tgatataaac agaatctgta gactctaaaa
      721 tatgatatgc aaccccaagt aaaagagtca agtatttttg acttctttga caagtactat
      781 attgtaagtt gtcgtaatga atactattat caagatatct atagtcagta ttgcaatagt
      841 attgcaatca tcgtaagagt tgttgttctt ctgtagtttt catattcttg attactttat
      901 tacaataatg taccgttctt attaagctct tatatcagga gtttagaatg ctttgcttcc
      961 tactaattac gcgctattat taattctgaa taatgctatg ctagagtttc ctgactcttg
     1021 ttttaataat ggtatttcat ttataaagtg tacagagtat agaggtgcta aaagtaaaat
     1081 tattctaaca aattatttaa tcaattagtt atatttcaat catgatcaag gcttatacca
     1141 atcatcaaat ttcttacttc tttttcttac tggccttata taaacaaaat atctccatag
     1201 gaatgcaaaa gctaccgctg ctattccacc aattatgaat ctccatccta ttataataaa
     1261 tccttcgcct tcttctttaa gctgaataat ctgcgaaatc cacagacata ctccgccgaa
     1321 tactatgatt attattccag cagatagtat tggcttaaaa attgtatttc tttcgctaaa
     1381 tgacatagca aagtatcatc tttattttcc ctttcttttc tatctcataa tcaaaacaca
     1441 tgataattct aaatatggtc ttaataactt aaatatcttc tatttaactt ccttatttta
     1501 taaaaccctt attgtattca tatgttcttc tgtgtttttt gaaataataa taatttgagg
     1561 tctttatagt tgtgatggtc agctgaatta taaaacaaga aaacaaggtg aaatcctcaa
     1621 gtgtcattat aatagttacc tttgattatc
//
LOCUS       DATAAS010000379         2647 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2029841, whole genome shotgun sequence.
ACCESSION   DATAAS010000379 DATAAS010000000
VERSION     DATAAS010000379.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2647
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2029841"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(137..1615)
                     /locus_tag="VHF08_06170"
     CDS             complement(137..1615)
                     /locus_tag="VHF08_06170"
                     /inference="COORDINATES: protein motif:HMM:NF014910.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX2068269.1"
                     /translation="MIVPIADDLRRIAKGEILSDNWSRKIYSVDASSQSIIPSVIACP
                     HDEHDIEKICQYSISKGIAITARGAGTGLLGQSLSDGIVIDFTKYMNKIIEIEDDYIV
                     VQPGVVKGRLDNELKKKGKIFPPDPASSNYCTIGGMIANNSSGAHCLGYGSTIDFIEE
                     ISVVYSDGSFGYIRSNNEFDDKITMFLRLLSPYANLIHERYPKVTKNSCGYRLDAVLN
                     SQRLAPQKLFAASEGTLGIVTSVKLKTLNVPLYSHLLVLGFEDLLSAVYVVPLILKFS
                     PVALEMLDNTVVRHGDNTLRRPQKDGCLLFVEFAGDNPVEVERKYTHCRNKLSGKCNT
                     LESVSDDKSRTKIWEARKNALNHIMKLTIGSRRPVGLIEDTVVNINLLHDYTQYLQQM
                     YMDNKLEYVMYGHVGNGNLHTRPLIDTSSPREVELIDGLAQEVFKTVIRNRGTITGEH
                     GDGLVRVKYIESMYGSDIFSLFKDLKKLFDPTSIMNPGKKVI"
     gene            1736..2401
                     /locus_tag="VHF08_06175"
     CDS             1736..2401
                     /locus_tag="VHF08_06175"
                     /inference="COORDINATES: protein motif:HMM:NF024997.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HEX2068270.1"
                     /translation="MFERNRTRPFLIRYALYLYYLGLSLRNTSKALEPLVDRSYVAIW
                     YWIQEFDPKHVYPNKRKTRITAFIIDETQIQIGSSEAWLWVAVEPIHRMILGVYLSRH
                     RNMLVAEAFLKSLTKLYGRHMVYSDGGTWYPEACNSLGLKHILHSPFEKSIIERSMEY
                     VKDRTEGFDDYYPCMNKKDFDCSISHVHKWMTLFIFMYNAISKSDIKPNKINNWLGGD
                     LSS"
BASE COUNT          877 a          473 c          404 g          893 t
ORIGIN      
        1 aagacatttc caaagcaata ttatctatat tcatcatttt ataacgatca tatgctaatt
       61 tattattgct tgttataaat tcccaagttt tattttaatt gcatgaatat atgttatgtt
      121 gttgttttta ttctaattaa ataaccttct taccaggatt catgatagat gtaggatcaa
      181 atagtttctt aagatctttg aaaagtgaaa agatgtcgct gccgtacata gactcaatat
      241 actttaccct aaccaaacca tctccatgtt ctcctgtaat tgttcctcta tttcttatta
      301 ctgttttaaa gacttcttga gcaagtccat ctatcaattc gacctcacga ggtgaactcg
      361 tatctattag tggcctagta tgaagatttc catttcctac atgaccatac attacatact
      421 ctaatttatt atccatatac atttgctgca ggtattgtgt gtaatcatgc aacagattta
      481 tattgactac tgtatcttct atcaaaccta caggtcgtct acttccaatc gtcaatttca
      541 taatatgatt taaggcattt tttcttgctt cccatatctt cgtcctactc ttatcatctg
      601 atacactctc cagagtatta catttaccag ataatttgtt tctacagtga gtatattttc
      661 tttcaacctc gacaggatta tctccggcaa attctacaaa caatagacaa ccatcctttt
      721 gtggacgtct tagggtatta tccccatgac gaacaaccgt attgtcaagc atttctagag
      781 cgacaggaga aaattttaat ataagcggaa caacatacac agcagacaac aaatcctcaa
      841 aacctaaaac taataaatga ctgtacaatg gaacattaag agttttcaac ttcacggaag
      901 ttacaattcc taatgttcct tctgaggcgg caaataattt ttgaggggca agcctttggc
      961 tatttaatac cgcatctagt cggtatccac aggaattctt ggttactttg gggtatctct
     1021 cgtgaattaa gttcgcataa ggagacagta atcgtaagaa catggttatc ttatcatcaa
     1081 attcgttatt acttctgata tacccaaaac taccatccga ataaacaaca ctgatttctt
     1141 caataaaatc tattgtgctg ccgtaaccta gacaatgagc tccgcttgaa ttgtttgcaa
     1201 tcatgccccc aatagtacaa tagttactac ttgcaggatc aggcggaaaa atttttcctt
     1261 tcttttttaa ttcattatct aatctaccct taacgacacc tggctgtact acaatatagt
     1321 catcttctat ttcaattatc ttgttcatat acttggtaaa atcaatgacg atgccgtcag
     1381 agagagattg accaagaaga ccagttcctg ctcctctcgc tgttattgct attcctttgg
     1441 aaatactata ttggcatatt ttttctatat cgtgctcatc gtgtgggcaa gcaataacag
     1501 atggtattat agattgagag cttgcatcaa cagaataaat tttcctactc caattatcag
     1561 atagaatttc acctttagca atacgtctta agtcatcagc aattggaact atcattctaa
     1621 ttatgattta taatcgctga ttagtatatt tatataaata tagtgattgt atggctctgt
     1681 taagttaaac agttgtaacc tctaaagctt agtctattca aatattaatc cagaaatgtt
     1741 tgaacgtaat aggactagac cttttcttat cagatatgca ttgtacctat attatcttgg
     1801 attaagcctt agaaatacat ctaaagcatt agagccatta gtagatagaa gttatgttgc
     1861 aatttggtat tggatacagg aattcgatcc aaaacatgta tatccaaaca aaaggaagac
     1921 tagaataact gcatttatca tagatgagac tcaaatacag atcggttcta gtgaagcctg
     1981 gttatgggtg gctgtggaac caattcatcg aatgattcta ggagtttatc tttcaagaca
     2041 cagaaatatg ctagttgcag aagcatttct aaagtcacta accaagcttt atgggaggca
     2101 catggtatat tcagatggtg gaacatggta tcctgaagct tgcaattctt taggactaaa
     2161 acacatactc cattcaccat ttgagaaaag tattatcgaa aggtcaatgg aatacgtaaa
     2221 ggacagaaca gaaggttttg atgattatta tccttgtatg aataaaaaag acttcgactg
     2281 cagcatatca catgttcaca aatggatgac attatttatt ttcatgtata atgcaatatc
     2341 aaaatccgat atcaaaccta ataagattaa caattggtta ggaggtgatt tgtctagtta
     2401 acttaacaga gccgattgta tgtatgttaa aaataaatat aagatgatat ctacagctaa
     2461 catacaattt agaatatcta gagataacaa ctaaaatatc ccttttatta tacaactctt
     2521 atataagaac atattataat taagatttca aattttatga atagtatata attacgtgtt
     2581 aactaagaac taattatatt ttggcattag agttcacaag taaatcatca aataacaatg
     2641 caagatg
//
LOCUS       DATAAS010000380         2738 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2574132, whole genome shotgun sequence.
ACCESSION   DATAAS010000380 DATAAS010000000
VERSION     DATAAS010000380.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2738)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2738)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2738
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2574132"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1162)
                     /locus_tag="VHF08_06180"
     CDS             complement(<1..1162)
                     /locus_tag="VHF08_06180"
                     /inference="COORDINATES: protein motif:HMM:NF019348.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2068271.1"
                     /translation="MNSKNMEDIVHHSYASKPKYTELMPGVPEDYKQINTLEDLLMIN
                     YKHVSVEQQMRGNLIIRLKKDEHPYSGIIGYEEDVIPSVNRSILSGHDMLFVGQIGQA
                     KTKVAESISKNLLSPIPTVRGTITNDIPTSIPEGQLIALLTESEIVRSSPEFNVSKEC
                     EDIIRNNKLDTKIDWIDGADRYRYVLATPDISVKDLVGQIDAIKIAKKGVELYDIASY
                     SPGQLLQARHGILCIDELPVLDPRKQVALLSVLQEGKFTTGSYPVIFKPDVKIIATAN
                     PIDYTHSGKIIEPLFDRLRSHISTHYPRNVIDEMLIIAQEIRIADIKNVFLPIFILRT
                     ISKITQLARSHPEINHDKGVSVRMAVHSMEAMISEAERTRSVLHYVKAVPRFC"
     gene            1589..2185
                     /locus_tag="VHF08_06185"
     CDS             1589..2185
                     /locus_tag="VHF08_06185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEX2068272.1"
                     /translation="MSVAEYKHILRIAGKDIDGSKKVIVALSKVKGVGYNFAHVLLQS
                     LNINPNSRIGFLTDRELTDIEAAIRDPSKARMPEWYLNRRKDMDTGSDRHLITSDLDF
                     MISNDIDREKTIMSWRGYRHMFGLRVRGQCTRTTGRRGGAVGVKKVGRPMPSAVSNTP
                     TKSTGPAASSATGGAASTTKPAAAAAGEENTNSTAPKK"
     gene            2199..2696
                     /locus_tag="VHF08_06190"
     CDS             2199..2696
                     /locus_tag="VHF08_06190"
                     /inference="COORDINATES: protein motif:HMM:NF003139.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEX2068273.1"
                     /translation="MGDPRKSKKTFHRPRRIWTTDQLNSELYIVGSYGLRNKRELWRA
                     QTEVARLRNQARALLAIPAEVRHEKEAQLLNFLNRQGLVNESASLDDVLNLKIEDLLD
                     RRLQTIVMKKNGSKSPHQARQMVVHKHVSIGDRFVNIPGYLVKREEESQILLHMAVGT
                     QSQPQ"
BASE COUNT          863 a          480 c          524 g          871 t
ORIGIN      
        1 cacaaaacct tggtactgct tttacataat gcaataccga tctagttcgt tctgcctcgc
       61 taatcatggc ttccattgaa tgcactgcca ttcgcacgct tacgccttta tcatggttga
      121 tttctggatg agatctggct aattgtgtta tcttactaat ggtccgtagg ataaatattg
      181 gaagaaatac attttttata tctgcaattc ttatttcctg agcgataata agcatctcat
      241 caataacgtt tctggggtaa tgagtagata tgtgacttcg aagtctatcg aacaatggtt
      301 ctatgatctt tcctgaatga gtataatcta tagggtttgc agttgcaatg attttgacat
      361 caggcttaaa tattacagga taagatcctg ttgtaaattt gccctcttgt aagacgctca
      421 gtaatgccac ctgttttcgc ggatcaagta caggaagctc atcaatgcac agaataccat
      481 gacgggcctg taataactga cctggagaat atgatgctat atcatacaat tcaactccct
      541 tcttagcaat tttaattgcg tcgatctgtc ctactaggtc tttaacagaa atatcaggag
      601 tagccaagac atatctatat ctatcagcac catcgatcca atctattttt gtatccaatt
      661 tgttatttct aataatatcc tcgcactcct tagagacatt aaattccgga gatgaacgaa
      721 caatttcaga ttcagtaagt aatgcaatta gctggccttc tggtattgaa gtaggtatat
      781 cattcgtaat tgttccacgg actgtaggga taggtgaaag cagattcttc gatatagatt
      841 ctgcaacttt cgtctttgcc tgtcctattt gacctacaaa aagcatatca tgtccagata
      901 gaattgacct gtttacggaa ggaataacat cttcttcata accaataata ccagagtaag
      961 gatgttcgtc ttttttcaat cttataatga gattaccccg catttgttgt tcaactgaaa
     1021 catgtttata attgatcatt agtagatctt ctaaagtatt gatctgcttg tagtcttcag
     1081 gaactccagg cattaattca gtatattttg gttttgaagc ataggaatga tgtacaatat
     1141 cttccatatt tttagaattc atgaattatt agatttcgct tgtgtgacaa atttaaacat
     1201 tattaattga ggatccagaa gtattctaag catgtaggtc agaaaattat acaaccgctt
     1261 tatctcttgt gttttaccag atttgacttg cttttgcatt ctataaatta ttctataata
     1321 ttttttatat tatatgatat taaaagaatt tataatcata ctttcactca aacattctaa
     1381 acatcaagct cctctgtctt ctttctggcg atatctagtt gatcggagac ggtttatttt
     1441 tatatccaat acgattatca aagatagttc agaatatagt tactttatac ttttttcttc
     1501 tactatatgt tttttgaaca ttatgatgta tattcttccg cgaatcgagt atggttttta
     1561 ttaaggagtt accttaaaat tttttgattt gtcagtagca gagtataaac atatccttag
     1621 aattgctgga aaggatattg atggaagcaa aaaagtcatt gttgctctta gtaaagttaa
     1681 aggtgtaggt tataattttg ctcatgtttt gcttcaatca ttgaacatta atccaaatag
     1741 cagaataggt ttcctaacgg atagggaatt aacagatatt gaagcagcta taagagatcc
     1801 ctcaaaggcg agaatgccag aatggtatct gaataggaga aaagacatgg atacaggttc
     1861 tgatagacac ttgattacct cagatctcga ttttatgata tctaatgata ttgatcgaga
     1921 aaagactatt atgagttggc gaggttatag acacatgttt ggtttaaggg ttagaggcca
     1981 gtgcacaaga actactggaa gaagaggtgg tgcagtaggg gtgaagaaag ttggcagacc
     2041 tatgccttcg gctgtatcga acaccccgac taagagtact ggtccggcag cttcatctgc
     2101 aacaggcgga gcagctagca caactaaacc tgcggcagct gcagcaggtg aagagaatac
     2161 aaattcaaca gcgcctaaga aataatggta gatgagaaat gggagatcct cgtaaatcta
     2221 aaaaaacatt tcacagacca agaaggattt ggactactga ccagcttaat tcagaacttt
     2281 acatagtagg ttcatacggt ctgcgcaata agcgagagtt atggcgggca cagacagaag
     2341 tcgcaaggct cagaaatcag gcccgggcat tacttgctat tccggcagaa gtgagacacg
     2401 aaaaagaagc acagttgtta aattttctaa ataggcaggg actcgttaat gaatctgcaa
     2461 gtcttgatga tgtcttgaac ctcaagatcg aagacctcct tgatagaaga cttcagacaa
     2521 tagttatgaa aaagaatggt tctaaatcgc ctcatcaagc acggcaaatg gtcgtacaca
     2581 aacatgtatc tattggcgac agatttgtca atataccagg ttatctagta aaaagagaag
     2641 aagaatcgca gattttattg catatggccg ttggcaccca atctcagcca caatgactta
     2701 atattctatc aataattttt aaaattacaa cgtttaag
//
LOCUS       DATAAS010000381         4149 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1619735, whole genome shotgun sequence.
ACCESSION   DATAAS010000381 DATAAS010000000
VERSION     DATAAS010000381.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4149
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1619735"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(351..1391)
                     /locus_tag="VHF08_06195"
     CDS             complement(351..1391)
                     /locus_tag="VHF08_06195"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YncE family protein"
                     /protein_id="HEX2068274.1"
                     /translation="MKKENYSFLFLIILIPIVFVILCTVSSYFIFSFSILPASAQIEN
                     NNRTASGEKGFLYVGNAKSNNISVIDLVNNKAIKNITVGSGTHDIKISDDQQTVYTTD
                     IDSGTVSIVNATSNTLIDQINTDVAVHGVAEFNDTLYVGDVYGGKLLVIKDNAIKDEI
                     KVGSGPEYVEARPPDGRILYVANLWSPISVVDLAENRVIKNIDSGVTPHGLSFTKDGS
                     RLFIVNMHSNTLSVIDAQKHEIIKTIPVGKNPEYVKLSPDERFAYVTNLGEDTVSKID
                     LSNLEVIKSKIPVGKGPHGIAFSEDGEMAYISNMKSNDVSVIDTFTDKVIATIPGGGI
                     EPHQIVMKKAFK"
     gene            1560..2303
                     /locus_tag="VHF08_06200"
     CDS             1560..2303
                     /locus_tag="VHF08_06200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068275.1"
                     /translation="MNRNIVLGILLTLFSIIICNSSLYTNHIVYAHNFSITDDSALLT
                     LIEQIKAETELVNAYFLASNSISAIEHAKNAANLTNGLNDKLRQSTVADITQVYNNGL
                     YNSTTLALVVANLVDEILRNYGSAYGITYDLTNMSNMMMSMTLNNNSSSSGHSSMSEK
                     NNAVLVNIYNYQTAQVLSNVVNRLFNDKLSAQAPVNEKVTIDNLEQSIKDLKYAIDNK
                     IRAEYLMEIVHMKIHPMLQSAYDLKLVVR"
     gene            complement(2458..3411)
                     /locus_tag="VHF08_06205"
     CDS             complement(2458..3411)
                     /locus_tag="VHF08_06205"
                     /inference="COORDINATES: protein motif:HMM:NF017773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF726 domain-containing protein"
                     /protein_id="HEX2068276.1"
                     /translation="MAQTLTLTTTNMSYRIDDIVSTRGHFDYLTTGELISGHNRTDYE
                     YYNDNNSGIEGEIICPHQKEIAIYIHGVWTDETSANEQFDRTAKSLAANNYSIPLIGF
                     SWDSNTPLSKNGWGVAKNIARDTGLKLAQFIFDFKNKCKDTDIRLIAHSLGAAVVNST
                     LITISNNQALNNNVNNNFNIKSVHLLGAAMDRNAAASNTTFGKAIENVVDSFYNLRNP
                     EDNMLEYVYRYVENRDAIGLLGIQHSLPIPSGYSERQVDSEILPIPDADANAKFDCFD
                     FFVLLPGDNHCGYIGFRNLHPFGNILRDDGSIDIVVRNWSE"
BASE COUNT         1321 a          727 c          683 g         1418 t
ORIGIN      
        1 atatactcca tacgtcaaat atcttttata atgtaaccag aagagacttg ggcgggattc
       61 gaagatggaa acttgaatag cgaagcctat acagcattgg taaggcaaag gtccaggcca
      121 aggcttcatt atttttagaa aaggagaaag aaacgaacct ttccctattg caatattgtg
      181 taatgcatta ctatagatat cttgtacatc aaaactatga gcccctcaaa attttgctta
      241 gtagtgacat ataatggatg aaaaccatac ctagtagtca gatttgccct ggatccatta
      301 gttcatttta tattttttca taaggaattc ttgcagaaag tcgtcagcta ttacttgaaa
      361 gcttttttca taacaatttg atgaggttca attccccctc caggaatagt ggcaataact
      421 ttgtcagtaa atgtatcaat tactgataca tcattgctct tcatattact aatatatgcc
      481 atttctccat cttcgctaaa agcaatacca tgtggtccct tcccaacagg tattttactt
      541 tttattacct caagattgct tagatctatt ttagacacag tatcctctcc tagattagtt
      601 acatacgcaa atctttcatc tggagataac ttgacgtatt ctgggttttt tccaactgga
      661 attgttttaa taatctcatg cttttgagca tcaataactg aaagtgtatt actatgcata
      721 tttacgataa acaatctaga tccatccttt gtaaaagaaa gaccatgagg agtgactcct
      781 gaatctatgt tcttaattac tctgttctct gccaggtcta ctacagaaat tggactccat
      841 agattagcaa cgtaaagtat tcttccatca ggtggccttg cctcaacata ttctgggccg
      901 gatccaacct ttatttcatc ttttattgca ttgtctttta taactagtag tttgccacca
      961 tatacgtctc ctacatatag ggtatcatta aactctgcaa caccatgcac agccacgtca
     1021 gtatttatct gatctatgag cgtattactg gtagcattca caatggatac tgttcctgaa
     1081 tctatatcag tagtatatac tgtctgctga tcatctgaga tttttatgtc atgagttcca
     1141 cttccaactg taatattttt aatggcctta ttatttacaa gatcaataac agaaatattg
     1201 ttagatttag catttcctac atataaaaat cctttttcac cactggctgt tctgttatta
     1261 ttttctattt gtgctgaggc tggaagtata ctaaaggaga agataaaata tgaggatacg
     1321 gtgcatagta taacaaatac tataggaatt agaattatta gaaataggaa tgaataattc
     1381 tcttttttca atattgtata atagttcaca atgtcaatat taattcgtac cgtctacaaa
     1441 cgtgtgaaac ctgttgagct atgtgtatat taatccagcg ttgggagctt atcaagcctg
     1501 tcctttcatg gtgtcaatgt taactttatt tattaataat aaaggttgat tagtttcata
     1561 tgaatcgaaa tattgtttta ggaattttat tgacattatt ctcaattata atatgtaatt
     1621 ctagtctgta taccaatcac atagtttatg cgcacaattt ttctataact gatgattcag
     1681 cgttacttac tctcattgaa caaatcaagg ctgaaacaga gcttgtaaat gcatattttc
     1741 tagctagcaa tagtatttca gctattgaac atgcaaaaaa tgccgctaat cttacgaatg
     1801 gtctcaatga taaacttaga caaagtacag tagcagatat tacacaggta tataataatg
     1861 gtttgtataa ttctacaact cttgctttag ttgtcgcaaa tcttgtagat gaaatattga
     1921 ggaactatgg tagtgcttat ggtatcacat acgatctaac aaatatgtca aatatgatga
     1981 tgtccatgac gttgaataat aatagttctt cttctggtca ttctagtatg tcagagaaaa
     2041 ataatgctgt gctagtcaat atatataatt atcagacagc tcaagtactt tctaatgttg
     2101 ttaatagact gtttaatgat aaattatcag cacaggctcc agttaacgaa aaggtaacta
     2161 ttgataacct agagcagagt attaaagatc taaaatatgc aatagataat aagatacggg
     2221 ctgaatatct aatggaaatt gtacatatga aaatccatcc gatgctacaa agtgcctatg
     2281 acttaaagtt agtagtaaga tagaatatat caactctaga ttataagagt ggtcacctat
     2341 aacttggaaa gaatagtaaa tgtatttgta tctcaaatca tttgatctga atagaataaa
     2401 gctaaacttg tcagacagaa aaatcttctc ttatcttaga ctaacttgat tatccactca
     2461 ttctgaccaa tttctcacta ctatgtctat tgagccgtca tctcttaata tattcccaaa
     2521 tggatgaagg tttctaaatc ctatgtaacc acagtggtta tctccaggta agaggacaaa
     2581 aaagtcaaag caatcgaatt tagcatttgc atctgcatct gggatcggaa gtatttcaga
     2641 gtcgacctga cgttcactat acccacttgg tataggaaga ctatgctgta ttccaagtag
     2701 tccaatcgca tcacgatttt ccacatatct atagacatat tctagcatgt tatcttcagg
     2761 attgcgtaaa ttgtaaaaac tatccactac attttctata gcttttccaa aagtagtgtt
     2821 gcttgcagct gcattcctat ccatggccgc ccccaaaaga tgcaccgatt tgatattgaa
     2881 attgttgttt acattgttat tgagtgcctg attattactt atagttatca acgtactatt
     2941 aactactgct gcccctaaag aatgagcaat gagtcttata tctgtgtctt tgcatttatt
     3001 tttaaaatcg aaaataaatt gggcaagctt tagaccagtg tctcttgcaa tatttttggc
     3061 aactccccag ccatttttac taaggggtgt attagagtcc cagctaaaac caatcaaagg
     3121 tattgaatag ttatttgctg ccagggattt tgctgttcta tcaaattgtt cattggctga
     3181 tgtttcgtcg gtccatactc catgaatata tatagcaatt tccttctgat gagggcaaat
     3241 tatttcacct tctattcctg aattattgtc attataatat tcatagtctg ttctattatg
     3301 tccagaaatc aattctcctg ttgtaagata gtcaaaatgt ccacgtgtgg aaacaatatc
     3361 atcaatgcga taggacatat ttgttgttgt taacgttaat gtctgtgcca taacagaaaa
     3421 gctggtagag agcggattta agacaattat caataaacat aaaatagtta ggactgaaat
     3481 gaagagaaat aaatttagtg gtaattctga tctgctaatg tttccatgca ctgcaaaatc
     3541 ttgtatcatg acgttcattt aaagatattt tgtataaggg atgtactagg aggtgattta
     3601 agtaattctc tgacttggga tttagtctta tcattaaatg actacggtac ttcttatgaa
     3661 ttgcaaaaaa taaccttaaa ttaagaccag atatatgaga gttgtttgta taggtgtatt
     3721 aggttgggtg aaataattga gtcgattttg gtatgcattc caccgaaccc tgaccaattc
     3781 tctctaattt tgcgtattaa taacggaatg aagtaaagga tctactaacc aggtcaaatt
     3841 tgattcatat cccttgatcc gcaaatttgt gtcgataaca gttcacaaat gacctggccc
     3901 attccaatct tgttccatta tttaggccga gatatggaaa ctgaaaatgc taaataaaaa
     3961 agtttaaggt ttatatcttc tgattatacc ttagaacccc ttcttaatac tgatatcatc
     4021 actaatccct ccgaaccagc ttcactagtc tatcatttta tagaactaca ccatgatgat
     4081 atcataataa atgtctgctg aggttgctat cgattcactg ccggttccat caggttatct
     4141 ccttatgca
//
LOCUS       DATAAS010000382         4687 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4188512, whole genome shotgun sequence.
ACCESSION   DATAAS010000382 DATAAS010000000
VERSION     DATAAS010000382.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4687
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4188512"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(96..1676)
                     /locus_tag="VHF08_06210"
     CDS             complement(96..1676)
                     /locus_tag="VHF08_06210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="vWA domain-containing protein"
                     /protein_id="HEX2068277.1"
                     /translation="MSLSNSMIMRNDVLLDIATFLARRWSRNPKAVIVLTQDKIPLGN
                     PYKNQIVLPYLNYYPGSDFQKYRQWRVALWYESMRLLHSTKVLSYDHAFGFLLNTVET
                     KRIELLGLRQWNGMRNELIFNEGISWLSRPLLNSIHGKHKISEAFSQYFLTGYLKGEL
                     YGGEFERVRKASEFANNIVLESIDNNYKTEWIEQYIPQLIKILELDPLSSIPIIAPRT
                     RIGMSLNQSDVLKQLEKLVTMKHDYNDDKKALKEIVEGNEILSEFETLIKESKKTENK
                     GYESLENFGLSIPQKMDVDETSIYDTDLIQKVKASFRNWKTGWIERHGDMGEEFDPES
                     YSENLPKTFLIDYKLSIKTKVVILLDHSSSIEDVELEYKRATIALCEALHYLGIKFAV
                     FAFSTDERRVKCWVVKPANIKWSIISARRLVQIKASGGTPLAEIYGLLQPMIKSFKPD
                     IMVTLTDGEPSDFDSVREMVLLYRKMGIRMVSIGVGRNLSDSVSIGHNLIYLNYEKTM
                     AVHRLQDIPKKVINLLRA"
     gene            complement(1689..2492)
                     /locus_tag="VHF08_06215"
     CDS             complement(1689..2492)
                     /locus_tag="VHF08_06215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEX2068278.1"
                     /translation="MMMEINYLDWNNAIDILNKAHETRLFALIIGPKGTGKTTLVRKF
                     ASKTNKELYSVNFSLRTRESHLIGSKTLDKGDVSFVEGILVKSMRDGSLLYLDELNAA
                     EPDVLLRLDEALDDRKQLVLKEAEGQIINASNSWFVIATINPLSHVGTKELPPQLLSR
                     FPVRLRLDYPPEDVELEIIKQHTTIDNSKTNDVKDAIKLARSLREAAAVEELYYSPSL
                     RETIAFAKLLNKDLAPKEVAEIVFANAYDQWGEVEYRKVMDMITSIFGN"
     gene            complement(2587..3987)
                     /locus_tag="VHF08_06220"
     CDS             complement(2587..3987)
                     /locus_tag="VHF08_06220"
                     /inference="COORDINATES: protein motif:HMM:NF024909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VWA domain-containing protein"
                     /protein_id="HEX2068279.1"
                     /translation="MYQHTKNRTGTKRFVYFSAEDNQDQNHIKSKDHDSQNIPNEMLE
                     KLLQAIGRESLRERTPNLQQLEQILEDVISNEPEYSDNVKQGTGKGQTTKTNDEDRED
                     LGMPIVTQLIQRGYLKDSQKWLTSKGFISIGGKILNDIMKALKTGEFGLHETLSHGSG
                     SLLIDTTRKYEIGNDIRLLNVPRSLLNTVQRMAKKPDQIKIPLDLEINDLEEYETMQD
                     IRIALVYCIDLSSTMRYSSMFGDMTRIEAAKRALWSLFLLNRKYFPSDSIYIVGFGAL
                     ASKVAPQDIPYLQTFEPGSDFLHYTNYQAAFRLAKKILQKDGALNRRIVLITDGHPSA
                     CFIEDKQEQNKILSQRPYSHFYVPDKETIESVKDDKDLSLDTSSGQLVYLCYRYRQVD
                     QYIGDRTIVEAKKCRSLGIEIDTIMISEEDSLLGYVNEMEKYVKGRSYYINPAVIDKV
                     LLNDYLSNKKMTIRAG"
     gene            complement(3971..>4687)
                     /locus_tag="VHF08_06225"
     CDS             complement(3971..>4687)
                     /locus_tag="VHF08_06225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068280.1"
                     /translation="AQEIRIADIKNVFLPIFILRTISKITQLARSHPEINHDKGVSVR
                     MAVHSMEAMIGEAERTRSVLHYVKAVPRFCDIHSIHQSAKFELSEMEDNHHNRMNVLD
                     SIIENAIKDVSLEYVQNLSPEQITKLKNEFAKNKEFLVSQIILGAKGSDSTDYESQLA
                     KFPSLKQVINDTIVTVEEEQKEFVNKAKDLGINTETLSIVHDLDGEFTASVTEVILEG
                     IRWIQPPLLNKKDNSYVSTY"
BASE COUNT         1362 a          941 c          733 g         1651 t
ORIGIN      
        1 agaaaaatga tgatgcatcc actcacagac aaagggctca ctggatttct taatgattgg
       61 gagaaggtaa agacccaaaa tcctaatcta ttaatctagg cacgaagtaa atttattacc
      121 tttttaggta tgtcttgcaa cctatgaaca gccatagtct tctcgtaatt caaataaatt
      181 aaattgtgac ctatactaac cgagtcacta agatttctac caactccaat tgataccata
      241 cgtatgccca tttttcgata taataagacc atttcacgga cagaatcaaa gtcagacggc
      301 tcaccatcag ttagtgtaac cataatatca ggcttgaaag attttatcat aggctgtaat
      361 aacccataaa tttcggcaag tggagttcca ccacttgcct ttatctgcac taatctccga
      421 gcactgatta tcgaccattt tatatttgct ggttttacta cccagcattt cactcgtctt
      481 tcgtcagtgc taaaagcaaa aactgcaaat tttataccaa gataatgtag tgcttcacat
      541 aatgcgatag tagccctctt gtattctaac tcgacgtctt ctatgctact ggaatgatca
      601 agcagaatta caacttttgt tttgattgaa agtttgtaat caatcaaaaa tgtcttgggc
      661 aagttttcag aataactttc gggatcgaat tcctctccca tgtctccgtg acgttctatc
      721 cagccggttt tccagtttct gaaagatgcc tttacctttt ggattaaatc agtatcgtaa
      781 atagaggttt catctacatc cattttttga ggaatactaa gtccgaaatt ctccaaactt
      841 tcataacctt tattctcagt cttcttactt tcctttatca aagtttcaaa ttcgctaaga
      901 atttcatttc cttcaacaat ctcttttaac gcctttttat catcattgta gtcatgtttc
      961 atagttacta gtttttctag ctgttttagg acatcgcttt ggttcagtga cattccaatt
     1021 cttgttcttg gagcaataat gggaattgat gaaagggggt caagttcaag tatttttatt
     1081 aattgtggaa tatattgctc tatccattca gtcttgtaat tattgtcgat agattctaat
     1141 actatattgt tggcaaattc cgaggccttc cttactcttt caaattcacc gccatacaat
     1201 tcacctttca gataacctgt taaaaaatac tgagaaaatg cctctgatat cttatgtttt
     1261 ccatgaattg aatttagaag gggacgcgat aaccaagata ttccttcatt gaatatgagc
     1321 tcatttctca ttccattcca ttgacgtaat cccaataatt ctatacgctt agtttccaca
     1381 gtattgagaa gaaatccaaa ggcatgatca tagcttaaaa ctttggttga atggagcagt
     1441 cgcattgatt cataccataa tgcaacacgc cattgtctat atttttgaaa atcagaacct
     1501 ggataataat tcagataggg aagaacaatc tgattcttgt acggatttcc cagaggtatt
     1561 ttatcttgcg tcagaacaat cacagctttg ggatttctag accatcttct ggccaaaaaa
     1621 gtagcaatgt ccaacaatac gtcatttctc ataatcatgc tatttgataa tgacaatgtt
     1681 atcacagcct agttgccaaa gatagatgtt atcatatcca taacctttcg atactcgacc
     1741 tctccccact gatcatatgc attggcaaaa acaatttctg caacttcttt tggagcaaga
     1801 tccttattga gaagttttgc aaaagcaatt gtctccctta aactcggact atagtataac
     1861 tcttccaccg cagcagcctc tcttaaactt cgagctaatt taattgcatc tttgacatca
     1921 tttgtttttg aattatctat cgtagtatgt tgttttatga tctccaattc tacatcttca
     1981 ggaggataat ctaacctcag tcttaccgga aacctgctta aaagctgagg tggtaattct
     2041 tttgttccta catgtgaaag tggattaatt gttgcaatta caaaccaact attagaagcg
     2101 ttgattatct gtccttctgc ctctttcagt acaagttgtt ttctgtcatc aagggcttca
     2161 tcaagtctca ataatacatc tggttctgca gcgtttaatt catcaagata tagcaaactt
     2221 ccatctcgca tggattttac aagtatgccc tcaacaaaac taacatctcc tttgtcaagg
     2281 gttttactgc ctataagatg agactctctg gtgcgaagac tgaagttaac ggagtataac
     2341 tctttatttg tttttgaagc aaattttctt acgagagtag tttttccagt tccttttggt
     2401 ccaataatca atgcaaagag tctcgtttca tgagccttat tcaatatatc aatagcatta
     2461 ttccaatcaa gataatttat ttccatcatc atacggtcag atcacctaga taattttcat
     2521 tatcataata cataaaaact atagctattt accaaatatt taagaaaata ggttatatca
     2581 gatttatcaa cctgcacgaa tagtcatctt tttgttactc aaatagtcat taagaaggac
     2641 tttatctatt actgcaggat taatataata agatcttcct ttgacatatt tttccatctc
     2701 attaacgtaa cctagtaaag aatcctcttc acttatcata atagtatcaa tctctattcc
     2761 caaactgcgg catttttttg cttctactat tgttcgatct cctatatatt gatccacctg
     2821 cctgtagcga taacaaagat acacaagctg tccggacgaa gtatcgaggc tcaaatcttt
     2881 atcatctttt actgattcga tggtttcttt atctggcaca taaaaatgag aatatggtcg
     2941 ctgagatagt atcttgttct gttcttgttt atcctcaata aagcatgcac taggatggcc
     3001 gtcagtaatc aaaactattc ttctgttcaa agcaccatct ttttgcaaaa ttttttttgc
     3061 caatctaaaa gctgcctgat aatttgtgta atggagaaag tcagaaccag gttcaaacgt
     3121 ttgtaaataa gggatgtctt gtggagcgac ctttgatgcc aaagctccga atccaactat
     3181 gtaaatagaa tctgagggaa aatattttct atttaaaaga aaaaggctcc agagcgccct
     3241 tttggcagcc tcaattcttg tcatatcacc aaacatagaa gagtatcgca ttgtggagct
     3301 taaatcaata caatacacta aagcgattcg aatatcttgc atagtttcgt actcttctag
     3361 gtcgtttatc tctaaatcca gaggaatttt gatctgatca ggtttttttg ccattcgctg
     3421 caccgtattt aacaatgatc tgggaacatt gagaagccta atatcgttgc ctatttcgta
     3481 ctttcgtgta gtatctataa ggagagatcc gcttccatga cttagagttt catgtaatcc
     3541 aaactcacct gtctttaatg ccttcataat gtcatttaat atcttcccac ctatacttat
     3601 gaagcccttt gaggtaagcc atttctgaga atctttcaga tatcctcttt gtatcagttg
     3661 agtcacaatg ggcattccta aatcctctcg atcctcatca tttgttttcg tagtttgtcc
     3721 ctttccagtt ccttgtttaa cattatcaga atactctggt tcgtttgaga taacatcttc
     3781 caagatctgt tctagttgtt gcaaattagg agtccgttct ctcagagatt ctcttcctat
     3841 ggcctgaagt aacttttcca gcatttcatt agggatattt tgagagtcat gatctttact
     3901 ttttatatgg ttttgatctt ggttgtcttc agcagaaaaa taaacaaacc tttttgttcc
     3961 agtcctattt ttagtatgtt gatacatagc tattatcctt tttatttagc aaaggtggtt
     4021 gaatccatct gattccctcc agaattactt ctgtgaccga tgcagtaaac tcgccatcca
     4081 agtcatgtac tatagacaaa gtttccgtgt ttattccaag atctttcgct ttattcacaa
     4141 attctttctg ttcttcttcc acagtcacaa tagtatcatt tatgacctgc tttaagctgg
     4201 gaaattttgc caattgcgat tcatagtccg tagaatcaga tcccttagct ccgagaatta
     4261 tctgagaaac taaaaattcc ttattctttg caaactcatt ttttaatttt gttatttgtt
     4321 cgggggataa gttttgaaca tattcaagag aaacatcttt aattgcattt tctataatcg
     4381 aatctaatac attcattcta ttatggtgat tatcttccat ttcagacaat tcaaatttag
     4441 ctgattgatg tatgctatga atatcgcaaa accttggtac ggcttttaca taatgcaata
     4501 ccgatctagt tcgttctgcc tcgccaatca tggcttccat tgaatgcact gccattcgca
     4561 cgcttacgcc tttatcatgg ttgatttccg gatgagatct ggctaattgt gttatcttac
     4621 taatggtccg taggataaat attggaagaa atacattttt aatatctgca attcttattt
     4681 cctgagc
//
LOCUS       DATAAS010000383         3453 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5269495, whole genome shotgun sequence.
ACCESSION   DATAAS010000383 DATAAS010000000
VERSION     DATAAS010000383.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3453)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3453)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3453
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5269495"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(194..1231)
                     /locus_tag="VHF08_06230"
     CDS             complement(194..1231)
                     /locus_tag="VHF08_06230"
                     /inference="COORDINATES: protein motif:HMM:NF039905.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016301 - kinase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEX2068281.1"
                     /translation="MVIESNIKSTETAIVVNPNSASGLTGKNWDNLYVMIKRLFGDNS
                     EIVFTEKSGDGTNLTRNFLKKGCKKIVAIGGDGTINEVANGFFEEDIQIHGSSSEYNN
                     KGNDSFLTQAVFKPINSAAVMAVFPCGTRNVLVKSLDLPADFAECCQNFETYKLQKVD
                     VISVKATNITNHSKTAMRIYLNAAEIGIGAEVIDKAKKVRNVVNNRLISTVTGLVTTV
                     PTYESNLCEISIDDGHDTILTKMTMGIVANGKFLGGGFKAAPEANVLDGLLDVVILKE
                     SSSLEMIENFLNIKDGDYTNEGDIFYRQAKKVSIKSKENRDITVTIDGEPIGILPATF
                     EVLQNVLTIQM"
     gene            complement(1860..2540)
                     /locus_tag="VHF08_06235"
     CDS             complement(1860..2540)
                     /locus_tag="VHF08_06235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEX2068282.1"
                     /translation="MFAYYIIIILAIEGTFSFQGITDTVTSWISSIGYPGVFAATLLE
                     TIFPPIPSEIIFPLVGFVAQSKGLGLGDAIGMATIGALGSTVGAIMIYFIALKIGRPA
                     ILRIGKYVLINESKLQRAELWFEKHGAIAVFVGRLAPGIREIISIPAGLSKMNMVKFI
                     LFTFAGSLIWSISLTFVGYYFGETWSKFAEESGIFNIIALIIIVGVAAIIGFGYYKEH
                     KSSIKNNL"
BASE COUNT         1093 a          616 c          487 g         1257 t
ORIGIN      
        1 gagctgcaag cctttacttg cagcctatac atatacgatg tatcgttcct ctctttcggc
       61 taatcgaaca attagtgtgc gtagagaaaa tatatagcct tgtttgttaa atcaattatt
      121 aagaagagtc taataatatt aacctgatac ctggcgtatc aatcctagta tagaaatata
      181 tttaaaaata gacctacatt tggatggtta gcacattttg aagaacctcg aatgttgcag
      241 gcagaattcc tattggttcg ccatcaattg tgacggttat atctctattc tcctttgact
      301 ttattgaaac cttcttagct tgcctgtaga atatgtcccc ctcattagta taatcaccat
      361 cttttatgtt gagaaaattt tctatcatct ctaggctact cgattccttt aaaattacaa
      421 catctagcaa tccatctaaa acatttgctt ctggtgccgc tttaaagccc cctcctagaa
      481 attttccgtt agcaacgata cccattgtca tctttgtaag aatagtatca tgtccatcat
      541 caatagagat ttcacatagg ttactttcat atgtaggtac agttgtaaca agcccagtca
      601 ctgtagaaat aagacgatta ttaactacat ttctaacctt ctttgcctta tcaataacct
      661 cagcgccgat accaatctca gctgcattga gataaatgcg catcgctgtt tttgaatgat
      721 tcgtaatgtt tgtcgccttt acactaatga catccacttt ctgcagttta tatgtttcaa
      781 aattttgaca gcattctgca aagtctgctg gcaaatctaa tgatttgact agtacatttc
      841 ttgttccaca tggaaataca gccatgactg cagcagagtt tataggtttg aatacggctt
      901 gggtaagaaa tgagtcattg cctttgttat tgtattcact gctgctgcca tgaatttgga
      961 tatcttcttc aaagaagccg tttgcaacct catttatagt tccatcccca cctattgcga
     1021 caattttttt acatcctttt tttaaaaaat ttcttgtaag gtttgttcca tcacctgatt
     1081 tttcagtaaa cacaatttca ctgttatcgc caaaaagcct tttaatcatc acataaaggt
     1141 tatcccaatt tttaccagtc agtccactcg cagaatttgg attaactact atagcggttt
     1201 cagtgctttt tatatttgat tctatgacca tcctattcga tcctaattta tttatctatt
     1261 tttaagcata tcatattaag gtatatgatg gtgtgtatca atataataat taatttattt
     1321 atctattttt agtatatcaa tttctaaatt aagaatatcc tgttaataga atagttttga
     1381 cattaaagtt aagcctaggt tttattacca cttcctgtct taactcatcc tctaagttaa
     1441 aggagaaata tttttggatt ctgttgcttt atacaaatgg gctattgctg ccgttgcaag
     1501 tattatataa agatcattta ggatcgtaca gctatacata gtaatcaaat aagaattact
     1561 aattaaataa ttttttttag aatattgaaa ttctgatatt caatgatttt ttaatatcat
     1621 aaactatctt attttttgta gacatttatt tatctattat atataaaatt agatctataa
     1681 acgcaaaata ttagatagca aaatgatgtt tgttagtttg gtactgctat atcgaagata
     1741 gatacaactt ctgttttttg aagatagtgt agtgaagcta ttacattgat atagtgcatt
     1801 ataagaacac gtatgttagg aatatgttaa acgcttttcc aattattttg gaagaataat
     1861 tatagattat tctttataga tgacttgtgc tccttataat atccaaatcc aattattgct
     1921 gcaactccta caattattat tagagcgatt atattaaaaa ttcctgattc ttcagcaaat
     1981 ttactccagg tttctccaaa ataatatcct acaaatgtta aactgatact ccaaattaga
     2041 gaaccagcaa aggtaaacaa aatgaacttt accatattca tcttactaag gccagcagga
     2101 atagagatta tttcacgaat gcctggtgct aaccttccta caaatacagc tattgctcca
     2161 tgtttctcaa accataattc tgctctttgt agttttgatt cgttaattaa aacgtatttt
     2221 ccaatgcgaa gaattgcagg ccttccaatc tttaaagcaa taaaataaat cattattgct
     2281 ccaacagtcg aacccaaagc tccaatcgta gccattccta ttgcatctcc taatccaagc
     2341 cctttacttt gtgcaacaaa tcctactagg ggaaagataa tttcacttgg aattggtggg
     2401 aatattgttt caagcaatgt tgctgcaaaa acgccaggat atcctatact agatatccag
     2461 gatgttacag tatcggttat accttgaaaa ctaaaagttc cttctattgc cagaataata
     2521 ataatgtaat aagcgaacaa tcgttgtctg taagactgat ggatgatttg tcataaaagt
     2581 atatgtgtta ttatcataca ttaaccagct gatcgactag acatggacta attcagagca
     2641 tatcaacgga aatatcatat aaaacggaga catgaaaggt tgttgtaata tatatagata
     2701 tgctaaccac ttttgcgttt gtttatcctt ctgacgtagc catatcctct ccttcattac
     2761 ttttcttctt ctataatatc ttcctttttc atgttatgcg tctttttctt cttcatagta
     2821 ttcttttaat ctgactgtgt tgttgatata attatcctca accagatgtt ctatctaaaa
     2881 ctgccaccat ataatagaaa tttagtaaat agtgaaatac aaatactatg cgggtcacat
     2941 tcttcgtatt gtcaatctga atggactagt ctaaaaaact ttcaaaaggt aaaaccaaat
     3001 aagtaatgat tagatagcaa atgccgacga cgacacatta tatatctcta actagatatt
     3061 gtgtatttcc tatcaatcta tttcttgccc atatacttaa tatatcatcc catatattga
     3121 ctcgagttta caaaatgtca atagatagat aatattgctt ctatgtacga tggtaattaa
     3181 ttattaataa aaaatttaac gatgagcctg ccaaaatcat ttataaataa taacatgtcc
     3241 cttggagttt atagactcct tccttttgtt tgtatctagt atatatttag ctataagaat
     3301 tcctttacta ttaaatttat caaagatatt tttagttttt attctctaat tttagagtac
     3361 gtcactatga tcccttttat aatgtattgt aagttcttct gcagtagaaa aaactcttcc
     3421 acaattctca catttgtgat tggttggctc act
//
LOCUS       DATAAS010000384         2350 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2576692, whole genome shotgun sequence.
ACCESSION   DATAAS010000384 DATAAS010000000
VERSION     DATAAS010000384.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2350)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2350)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2350
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2576692"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            174..404
                     /locus_tag="VHF08_06240"
     CDS             174..404
                     /locus_tag="VHF08_06240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068283.1"
                     /translation="MKRTIGVLVVLSAILTAASLVMPSMTLDAQAQQCSTAASSGSGT
                     AESEAFAFEGFCDAFSTASPPEDDDHNNNNND"
     gene            complement(1127..1621)
                     /locus_tag="VHF08_06245"
     CDS             complement(1127..1621)
                     /locus_tag="VHF08_06245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068284.1"
                     /translation="MSSAFIVTLNTRTIISTPIIFAQTPDGNAKTDVSTPGIITFTYT
                     KLGVLGGNYERISYDSNTNILSVSNNTSVLDSDTSFSRASAEQISESDKKNLEQLINK
                     NGFFQANSIYPPNTTDAQDYTLHILNVRMDNRLHTVLWADTSSNVPSGLLSIVQAIEN
                     ISSK"
BASE COUNT          779 a          358 c          357 g          856 t
ORIGIN      
        1 gttaaaaatt cacttaagaa gcaccttttt tagcaaaaaa taaaggttgc ttgaaattct
       61 gaataatttt ccacatatat tctagatact gcttgtatat gatatattac tatgcgaatg
      121 ttatagcatg aataataaaa gaacgataaa tattactatg cgaatgttat agcatgaaaa
      181 gaacaatcgg agtgctggta gttttatcag caatcttgac agccgcatca ctcgtcatgc
      241 caagcatgac tctggacgca caagcgcaac aatgtagtac tgctgcatct agcggatctg
      301 gcactgctga gtctgaggct tttgcgttcg aaggattctg tgatgctttc tcaacagcta
      361 gcccaccaga agacgacgac cacaacaaca acaacaacga ctagtcagcc aactatagat
      421 tagatattgc acaaaataaa tatcccttct tcttttttta acaattaaga ctcgctcttg
      481 atttcagaaa tcaaaagcct tctgcccaat atgaaacttg cttttcatta ttattgttat
      541 catcattatt tgttttctaa ttattgatca ataaaaatgc atgttatgct tgctgtataa
      601 gtagcataaa ataattcggt ccatcatgga tcttccaaca acataaggct attaaactaa
      661 aataataacc atttgaagct ctctgttaca acatccagat attccgaaat gctgctagaa
      721 gaagtaagct ctttctaatt ttcttctatg atgttcacga ccgttaatta attaggaaga
      781 taaatcagat atagttgtag taatattatt gttagcatta taactcttat tattaccttt
      841 gtttgatgct gattcttctg ctgcgcatca taacctaagt ataggagaat agcggcagat
      901 gcgtaatgct cttcttgtga ctaaataagg attcgtgtgt ctatagattg tttagttttt
      961 atttgaaaat aagttttagt catagttttt cttgtagcaa ctatagttgt aatcattatt
     1021 cttttcttct ttgctgctta catatagact ttgacagcaa ttgctaattc tataacatat
     1081 tattatttag attaagagag aatcattatg agataaaaaa cttatattat ttggaagata
     1141 tattttctat tgcttgtaca atagaaagga ggccacttgg tacattgctt gaagtgtctg
     1201 cccataaaac agtatgcaac ctattatcca ttctgacatt taatatgtgc aaggtatagt
     1261 cttgagcatc tgttgtattt ggaggataaa tgctgtttgc ctgaaagaat ccatttttgt
     1321 taattaactg ctctaaattc tttttgtcag attcagatat ttgctctgcg ctagctcgag
     1381 agaaagacgt atcagaatca agaactgaag tattattact tactgacaag atatttgtat
     1441 ttgaatcata tgaaatacgc tcataatttc cacccaatac tcctagtttt gtatatgtga
     1501 atgttataat tcctggggta gacacatctg ttttggcatt tccatcagga gtctgggcaa
     1561 aaattattgg tgtagatata attgttcttg tatttagagt aactataaat gcgctactca
     1621 taataaaaaa tagaattatt attaatatct gtcgtgtgtt catatgcttg tcctatttct
     1681 tggactatat tagtctatat ataataacaa atatgtcatt ataaggctta ttttgaaagg
     1741 atataaatat tttaaaattc ctattttaga cgttggtgta ttatataatt tatatcaata
     1801 tatgaaggac tcgagtttga caaaagaaaa actctttgct aaattaatgt atatgtctca
     1861 cgtaatattg aatataaata aaatagatca tattatttta taaataataa tgagataaaa
     1921 ctctcacaga atggctcatt gaagcaccta aaaattttac cggtttgtaa ttctgtatat
     1981 atctgttttt agatatatgt acttatatat atatgcactc atatatattt agatatccat
     2041 aaattggcaa ttactagata tttgttttat ttatagtcat atttaagcga gtttgaaaaa
     2101 atataacgac aggatggtat atgaaattta agaaatgtta ttgaatgatt ctacctttcg
     2161 atttcatttt ttctactctt ttcttaacaa ttcattgtta aatttataga ttattgtcaa
     2221 gtgacaaaat acagtataag atacactcaa agctccttac tacatctata tcttaaatat
     2281 caattcctta cattttatgg cagattgtca aaatttgtta gctacaaatc ctgatgcatc
     2341 tgcatttggc
//
LOCUS       DATAAS010000385         2647 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2576752, whole genome shotgun sequence.
ACCESSION   DATAAS010000385 DATAAS010000000
VERSION     DATAAS010000385.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2647)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2647)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2647
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2576752"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(949..2205)
                     /gene="truD"
                     /locus_tag="VHF08_06250"
     CDS             complement(949..2205)
                     /gene="truD"
                     /locus_tag="VHF08_06250"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: protein motif:HMM:NF013322.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HEX2068285.1"
                     /translation="MNTQVPRIDKLAGIECYCTDYKGIGGSIKHSNEEFRVSEIIDTS
                     FLANISSVQDNHHKYPLYVLEKKNLDSNHAIFEIKRDLGIKLKVIGLKDAKAVTKQYA
                     SSEQTKNILKEAKTAHTHLTLKGFTKTPIGKSSLFGNTFTITIHDPALSDISLFLPEI
                     RKIANFYGLQRFGSERMVTHLVGKEIVKRNFQKAVELLLSYTTEYDSTMSIELRKKSR
                     DPKKYSQIIRELPRRMDIEYKVMSALENGKGPITALRSIPINIRRLFVQAYQAYIFNK
                     SLSIAVINGENVLESKEGDLCFEIEDSSVFGRIRKYNSSTDLNSQTVPAIRLIGYTFQ
                     PGKGRFDTITEKIMNIEGVTPREFYIKEMQELSAQGGFRQAPLWCRDFEFKGSLTVSF
                     KLPKGSYATTLLRELMKPKDPIRAGF"
     gene            2379..>2647
                     /gene="hsp14"
                     /locus_tag="VHF08_06255"
     CDS             2379..>2647
                     /gene="hsp14"
                     /locus_tag="VHF08_06255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp14"
                     /protein_id="HEX2068286.1"
                     /translation="MAKEVMRELGNRSKEFYEFIMPAIDIVEDGNDLLIIIDLPGFAK
                     KDIKLRIVGDILSINAKREPEENIGTVYYRQRPSVIEKKVTLPISV"
BASE COUNT          840 a          424 c          413 g          970 t
ORIGIN      
        1 cttaaaaata tcacatgtaa ttaaatataa ttgtaatatt gttgtttgat atatatatat
       61 atatatatat atatatatat ctcataatca agatgagata ttataatata aaaatgagaa
      121 aatgataatt attaaaagat aagcactctc agttgattgg tcttttaact ttgatgcctg
      181 caaatatagg accatttctt gtttaactgg atatcctttc aaaataataa tatattttaa
      241 ttgactagct aaaaaatcta gaatgcatta tgcagtattt atatccgtct atccgttaat
      301 atagataaaa caggcttaaa atatacagga tttataatat cgtattgctc tgcttatatt
      361 atgagaacac aacctcttct tttcttttac agaaaaaaac gtattaatga taaggagttt
      421 accttgttac aatatttttg ggctagtact gctttggcaa tatttattac tatgcccatg
      481 gtgggatcaa tgctatactt tcattttaat tataataact tgctatttgg tacgctcatc
      541 ggattttcag tccataccat tgtattagtg ttttcaaaac gactttcaac aatgttaata
      601 aatctagtct ctatctgatt gcttttattt ttattctatt atcaattatt acttctattt
      661 cttatagaat gaaactgctt ctattcataa ttattatttt atgatgatgt taaagaatcg
      721 ttgaagaatt ataattaagt tttgattaaa ctttcagatt tttttcatat atacataatt
      781 cgtatccagt gaattgtcaa aacccaaaaa ctttggtctg acccagtgtg aaaatttatc
      841 cttcctatgt cacagaaatt tcgtgtaaat atatccgagt gcaaatttct aaattgcttt
      901 tgcatttcac attacggaat aagcctgagc tgtagcaatg agaaaaactt aaaatccagc
      961 tctaattgga tccttgggct tcattagttc tcgcaataga gtcgtagcat aggatccttt
     1021 tggaagttta aaagataccg taagtgatcc tttaaattca aagtctctac accatagagg
     1081 cgcttgccta aatcctcctt gagcacttaa ttcttgcatc tcttttatat aaaattctct
     1141 tggtgttacg ccttcaatat tcattatttt ctctgtaatt gtgtcaaatc ttcctttacc
     1201 tggctgaaat gtatatccaa ttagacgaat tgcaggaact gtttgtgaat ttaaatccgt
     1261 actagaatta tattttctta ttctaccaaa aactgatgaa tcctctattt caaaacaaag
     1321 atcgccctcc ttactctcaa gtacattttc accatttatt actgcgatac ttagagattt
     1381 attaaaaata tatgcctgat aagcctgaac aaataatctg cggatattga ttgggataga
     1441 tcgcaatgct gttatcggcc ccttgccatt ttctaatgcc gacattactt tgtattctat
     1501 atccattcgt ctaggaagtt ctctaataat ttgagaatat ttctttggat cacggctttt
     1561 cttccgtaac tcgatgctca ttgtagaatc atattcggtt gtataagaca acaatagttc
     1621 taccgctttt tgaaaattgc gtttcacaat ttcttttccg actaaatgag tcaccattct
     1681 ttcacttcca aatctttgca atccataaaa attggctatt tttctgatct ctggtaagaa
     1741 taaagagatg tctgaaagag cgggatcatg gatggtaatt gtaaatgtat tcccaaatag
     1801 agacgatttt cctattggag ttttggtaaa gcctttcaat gttaaatgtg tgtgcgccgt
     1861 ttttgcttct tttagtatgt tttttgtttg ttctgaacta gcatactgtt ttgttactgc
     1921 ttttgcatct tttagaccaa taactttcag cttaatgcca agatcccttt taatttcaaa
     1981 tattgcgtgg tttgaatcaa gatttttttt ctccaaaacg taaagcggat acttgtggtg
     2041 attatcttgg acagatgata tgtttgcgag aaaagatgta tctattatct ctgaaactct
     2101 aaactcctcg ttactatgct ttatagaacc accgattccc ttatagtcag tacagtagca
     2161 ttctatgcca gcaagcttgt ctattcttgg aacttgggta ttcattaatt ttaacatctg
     2221 ggaattgttg aacccaataa agagtaatcg aattcctcta ccgtcatata tatcatggat
     2281 gtatgatgaa gcattaagag cattgtcaga ttcatgtata tcagaagaaa ggatttatat
     2341 cgattcgact aaaatggagt atgggtttag gacaatatat ggctaaagag gttatgagag
     2401 aattaggtaa tcgatccaag gaattctatg aatttataat gccagccata gacatagtcg
     2461 aagatggcaa tgatcttttg attataattg atctaccagg ttttgccaag aaagatataa
     2521 aacttagaat agtgggagat atcttatcga ttaatgcaaa aagggaacct gaagagaaca
     2581 taggtacagt atattataga caaaggccat ctgtgataga aaagaaagta acattaccta
     2641 tttcagt
//
LOCUS       DATAAS010000386         1731 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3102482, whole genome shotgun sequence.
ACCESSION   DATAAS010000386 DATAAS010000000
VERSION     DATAAS010000386.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1731)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1731)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1731
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3102482"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..448
                     /locus_tag="VHF08_06260"
     CDS             <1..448
                     /locus_tag="VHF08_06260"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HEX2068287.1"
                     /translation="SQGGMGLLWNTKKKYNDFMLKLEWRVMHKDDNSGVFVRFPDPGN
                     DPRVAVNNGYEIQIDDLGKPDGDGIHKTGAIYNFAAPSKIVSKPVGQWNDLEIKVIKQ
                     NYTVMINHQKVVEFIGNRSLSGYVGLQNHDAKSKVSFRNIGIKEMI"
     gene            1028..1630
                     /locus_tag="VHF08_06265"
     CDS             1028..1630
                     /locus_tag="VHF08_06265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00296 family protein"
                     /protein_id="HEX2068288.1"
                     /translation="MISNIEGEQLVKLARKAVQKYLGEPIDINIDNLERFSQKTGVFV
                     TLISVRSNEEQLRGCIGFPLSEKKLYQSIIEAAIAAATQDPRFNPVEKGELTNIIFEV
                     SILTPPKEIRVQNPNEFPNHIRLGRDGLILKWKYGTGLLLPQVPIELKWNIYEYLENI
                     CFKAGAPANVWLMPESKLYRFQAIIYKESVPNGPVIRVKL"
BASE COUNT          615 a          250 c          305 g          561 t
ORIGIN      
        1 ttcccaagga ggaatgggtc ttctatggaa tactaaaaag aaatacaatg attttatgct
       61 aaagttagaa tggagagtaa tgcataaaga tgataattca ggtgtgtttg tacgatttcc
      121 tgacccaggc aatgatccac gtgttgcagt taataatggt tatgaaatac agatagatga
      181 tttaggtaaa ccagatggtg atggaattca taagacagga gcaatttata attttgccgc
      241 tccaagtaaa atagtttcaa aaccagtagg tcaatggaac gatttggaga ttaaagtaat
      301 caagcaaaat tatacagtta tgataaatca tcaaaaagta gtagagttta ttggtaatag
      361 gtcattgagt ggatatgtgg ggttgcaaaa tcatgatgct aaatcaaaag tgtcatttag
      421 aaatatcggg ataaaggaga tgatataatc agagtatcaa aacttatctg ccttttttaa
      481 ataaataatc ctttcttatg taaggcgtat aataagaaag tgatataaca ataattgcag
      541 ttgctaatat taagataatt gtgatttaaa ttaccatact cttcaattgc tgcctaaagt
      601 ttcatattct gcattatcaa ctatgatgtc actcttcttt ttctctttta tggtttttca
      661 atggtatctg ttactgaatt ttttccattg atatcaagtt gcataacttg aaaaggtagt
      721 ccttgattgt gtgctattca aacaattggt ttagctttat caaggttacg cattctgata
      781 tacatataaa attcattctt tgctaagaat acagaagttt caagtgtata cgacatgaac
      841 ttccggtaac aactgcaaca tttgttgttt cataattgta tctagggaaa gcatctatag
      901 ttaaaaaata tttggcttcc aatatatctc ttgaaaatta agtcttgttg caaaagagtc
      961 agattatctt atattttata tatccgatat aattttaaag cgagttgcct attagataat
     1021 cttcataatg atttctaata tagaaggaga gcaattagtc aaattagcac gaaaagctgt
     1081 acagaaatac cttggagagc ctattgatat taacattgat aacctcgaaa ggttttccca
     1141 gaagacagga gtctttgtta cattaatctc cgtaagaagc aacgaagaac agctcagagg
     1201 atgcataggt tttcctcttt ctgaaaaaaa attgtatcaa tcgattattg aagcggctat
     1261 tgcggcagct acacaggatc ctagattcaa cccagtagag aaaggagaac taacaaacat
     1321 aatttttgaa gttagtattc ttactccacc taaagaaatt agagttcaaa atccaaatga
     1381 atttccaaac catatcagac tcggaagaga tggtttgatc ttgaaatgga aatatggtac
     1441 aggattactc cttccacaag ttcccataga attgaaatgg aatatttatg aatatcttga
     1501 aaatatctgc ttcaaagcag gggctcccgc caacgtatgg ttaatgccag aatcaaagct
     1561 ttatcgattt caagcaatta tatataaaga atctgtccct aatggaccag taataagagt
     1621 taaactgtag atatagacat aatgagaata gcagtattac cataggtatc tataagaatg
     1681 taaataattc tatatattaa tctgttattt gaataagcct ctgatttatt c
//
LOCUS       DATAAS010000387         3396 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2033930, whole genome shotgun sequence.
ACCESSION   DATAAS010000387 DATAAS010000000
VERSION     DATAAS010000387.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3396
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2033930"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..442
                     /locus_tag="VHF08_06270"
     CDS             <1..442
                     /locus_tag="VHF08_06270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068289.1"
                     /translation="RHNLRIAQIDLYDGLDQGIKLMLKESISAKILLQLPGKGVVLPL
                     SATIHPAWFVEWTMKKIILAKKTPWMPLMLLTDEIQQIAKVFDLEEKLLSIDNLSTSI
                     LFEKKEYRKHLRKVDIISKKAMKNMKTISLKVGPNYLHDIIDAV"
     gene            complement(395..1567)
                     /locus_tag="VHF08_06275"
     CDS             complement(395..1567)
                     /locus_tag="VHF08_06275"
                     /inference="COORDINATES: protein motif:HMM:NF024918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family protein"
                     /protein_id="HEX2068290.1"
                     /translation="MAKAYFTPYGVGLGHASRMMMVAERLGDSDVDIRFSSFGEGAHY
                     ISMQGYECTTVPPVEFAWSIEGGFSVKYTISNIPLWFTNFPRQVRDEINNIIKYDPDI
                     VVSDTRLSSLVASKILNIPSIVILNQVKLLLSPRLREFKISRTWEKMNGELLGLIWRI
                     ADRILVPDLPPPYTIAEQNTWDTSSVMKKLEYVGFTAPKSYITEAQLRETAAHLGIDR
                     SKPIVFIHISGPLKTRIPIIRTSIEACKSLRPEIQYVISEGRPGGDIKPRKITRLGWY
                     YEWCPIRDEIFAMSDVLVLRGGHTTISQAIQFGKPLITIPIENHSEQLGNSNKIAKIG
                     IGIRLEANKIKANQITCAIHQLLDDNRFQQKAEELMRLTERLDGINNIVKIIRSYF"
     gene            1696..3063
                     /locus_tag="VHF08_06280"
     CDS             1696..3063
                     /locus_tag="VHF08_06280"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2068291.1"
                     /translation="MFVRKTLKVMRGSDCNNNNTNLIYLTLIALLVISLFSYSLNQAF
                     ASIQPDLEKIDAKGLVILEGASLIDGTCSPLRNDSVVILKDERILTVTDKGKYTRYPK
                     DSEIVNLTGRFLIPGLFDMHAHVASVLSFSYNQTVSENTLKALLDNGVTTIRNPAGPT
                     KESVALRDAVAAGQIKGPQIFTAGRLINGLQFPTRFVETMANTEAEVREEVKRQADAG
                     VDYVKLYVGLYPNLVKTAIDEAHNQGIKVIGHLYLTSWTDAANLGIDALTHGVPVSPF
                     LLSKDTREIFIENGRGPFDHFLWLNLVDLNSTKINEMINALVKNKVPVDPTLSIYEAM
                     LKDDLQNQYLWPKVLQLTKILYDHGVTIMSGTDIPNLGLIPGVSLHHELELLVKAGIN
                     PLNVIKIATSNGAEALGILDDVGTIEAGKQADMIILNANPLRNIRNIGAIEGVIEDGQ
                     FFNHK"
BASE COUNT         1132 a          573 c          610 g         1081 t
ORIGIN      
        1 gagacataat cttagaatag cacaaattga tctttatgat ggattagatc aaggtataaa
       61 actgatgtta aaagaaagta tttctgctaa aatcttactt cagttgcctg gaaaaggagt
      121 tgtgttacca ttaagtgcaa cgattcatcc tgcatggttt gtagaatgga caatgaaaaa
      181 aatcatactt gcaaaaaaga caccttggat gccattaatg cttttgacag atgaaataca
      241 gcagatagca aaagtcttcg acttggaaga aaaattactg tctattgata acttgagcac
      301 aagtatatta tttgaaaaga aagaatatag aaaacattta agaaaagtag atatcatatc
      361 taaaaaggca atgaaaaata tgaaaactat ttcattaaaa gtaggaccta attatcttca
      421 cgatattatt gatgccgtct agtctttcag ttaatctcat caattcttca gccttttgtt
      481 gaaatctatt atcatctagc agttgatgaa ttgcacatgt aatctggttt gcttttatct
      541 tatttgcttc tagcctaatg cctatgccaa ttttggcaat tttatttgaa ttacccaact
      601 gctcactatg attttctata ggtattgtta tcaagggttt gccaaattgt atagcctgcg
      661 aaatagttgt gtgtcctcct cgtaatacca gtacatcgct cattgcaaaa atttcatcac
      721 gaataggaca ccactcataa taccatccta atcttgtaat tttcctaggt tttatatcac
      781 cgcccggtct tccttcagag atcacatatt gaatctctgg acgaagcgat ttacatgcct
      841 ctatggaagt tctgattata ggaatacgtg tcttcaatgg tccactaata tgaataaaca
      901 caataggttt tgatctatct atgcctaaat gcgcagctgt ttctctgagt tgtgcttcgg
      961 taatatatga ttttggagct gtaaagccta catattctaa ttttttcatt actgaactag
     1021 tatcccaggt attctgttct gctatggtat aaggtggagg tagatctggt accagaattc
     1081 tgtctgctat cctccatata aggccaagta attctccatt cattttttcc caggttctgg
     1141 atattttaaa ttctcgaagt ctaggcgaca gtaaaagttt tacttgattc agaattacta
     1201 tggatggaat attcagaatt tttgaagcaa caagagaaga taaccttgta tctgaaacta
     1261 caatatcagg atcatatttt attatattat taatttcatc tcttacttgc cttggaaaat
     1321 tagtgaacca tagcggaatg tttgaaatag tatatttgac tgaaaatcct ccctctatac
     1381 tccaggcgaa ttcaacagga ggaacggtcg tacactcata tccttgcatc gaaatgtaat
     1441 gagctccttc gccaaaagat gaaaatctaa tatcgacatc tgaatctcca agtcgttctg
     1501 ccaccatcat catacgactt gcatggccaa gaccgactcc ataaggcgta aaataggctt
     1561 tcgccaaatt aagagattta aaaaggattg attatatatt acttaaaaag aagaaaaata
     1621 tctgctatat gagcagtcag tttgtaataa aaaagattaa aaagagcaat tatttaacga
     1681 gaaaacaata atgcaatgtt tgtcaggaag actttgaaag taatgagagg ttctgattgc
     1741 aataataata atactaatct aatctatctg acattaattg cattacttgt tatttcctta
     1801 ttttcttatt ctcttaatca ggcatttgca tcgatccagc cagacttgga gaaaatagac
     1861 gctaagggtc ttgttatatt agaaggagcc agtttaatcg atggcacctg ttctcctcta
     1921 cgtaatgatt cagtagtcat tctcaaggac gaacggatac tgacagtaac tgataaagga
     1981 aagtatacaa ggtatccaaa agactcagag atcgtaaact taacaggtcg tttccttata
     2041 ccaggcttat ttgatatgca tgcacatgtt gcaagtgtat tgagtttctc atataaccag
     2101 actgtctctg agaatacatt aaaggcatta ttagataatg gagtcacaac tattcgtaat
     2161 ccagccggcc ctacaaagga gtcagttgca ctacgtgatg ctgtagccgc aggccaaatc
     2221 aaaggccctc agatctttac tgcagggaga ctgattaacg gcctacaatt tccaactagg
     2281 ttcgtagaga ctatggcaaa cacagaggca gaggttagag aagaggtaaa gcgtcaggca
     2341 gatgctggtg ttgactatgt caagttgtat gttggacttt atcctaattt agtaaaaact
     2401 gctatagatg aagctcataa ccaaggaata aaagtcatag gacatttgta tctgactagt
     2461 tggactgatg ctgcaaacct aggaattgat gctcttacac atggagttcc ggtaagccca
     2521 ttcttattat caaaagatac acgagagatt tttattgaga atggtcgtgg gccctttgat
     2581 cactttttat ggcttaattt ggtagatctc aatagtacga aaattaatga aatgataaat
     2641 gcattagtaa aaaataaggt tcctgttgat cctactttga gtatatatga agccatgcta
     2701 aaagatgatc ttcaaaacca atatctttgg cccaaagtct tacagctaac taaaatattg
     2761 tatgatcatg gagttacaat catgtcaggt acagatatac caaaccttgg acttattccg
     2821 ggggtaagtt tacaccatga gcttgagctc ttagtcaagg caggtattaa cccattaaat
     2881 gtcataaaga ttgcaactag taacggagca gaagcattag ggatacttga tgatgttgga
     2941 acaatagaag ctggaaagca agcagatatg attatactta acgcaaatcc actcagaaat
     3001 attagaaata taggggctat tgaaggagta atagaagatg gtcagttctt caatcataaa
     3061 taaaagatac aatagcaatg aagtaaatta tacaagtaaa aataagtata tatgctatgc
     3121 agaattgttc ttccaattgc attatacgag taggaatttt ctactcaatt ggaagatact
     3181 atattaaaaa ttaagtttat gttatgctct cttgcgttct ttgattaata gagtagcatt
     3241 gactgatttt gtcttgtctt gtattattat caagcaatta ggattcattt tccacttcta
     3301 tacaaaaagt ttatcatcct ttgatccttg cttattgtct ctttcacgta tggtaatgac
     3361 tataaaatca tcagaatcaa tttgcaatat aataat
//
LOCUS       DATAAS010000388         8116 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4734024, whole genome shotgun sequence.
ACCESSION   DATAAS010000388 DATAAS010000000
VERSION     DATAAS010000388.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8116
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4734024"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            584..1075
                     /locus_tag="VHF08_06285"
     CDS             584..1075
                     /locus_tag="VHF08_06285"
                     /inference="COORDINATES: protein motif:HMM:NF014678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF192 domain-containing protein"
                     /protein_id="HEX2068292.1"
                     /translation="MVGKIAVIIPVLVAAVTIGSLGLVFIPQEIKNKQIDFAEGTIRI
                     DDDVIKVEIAESRADKQRWLMFREERLPLNSAMILVYEKSDLYSMWLLNIEYNLDLIW
                     INENGNIVYMVKDAEPCKNTFDAASCTYKNTKAAKYIIAAASGFIEEHDITEKSIMTI
                     ISI"
     gene            complement(1333..3288)
                     /gene="acs"
                     /locus_tag="VHF08_06290"
     CDS             complement(1333..3288)
                     /gene="acs"
                     /locus_tag="VHF08_06290"
                     /EC_number="6.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003987 - acetate-CoA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0019427 - acetyl-CoA biosynthetic process
                     from acetate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase"
                     /protein_id="HEX2068293.1"
                     /translation="MSDPQFDTLSKIYEDSEKIKVSLEGKKLSKIRKQALENSEEFWE
                     EQAKYLKWFKEWDKVLDWNPPFAKWFVGGKLNASVNCLDRHIDSDAKNKVAIIWEGEN
                     GETNSFTYYQLYRSVNKLANALKNLGVKKGDRITIYLPMIPQLPIAMLASSRIGAIHT
                     VVFSGFSAQALADRANDSKSKIIITADGGYRRGKLIQLKRLVDDAISSIPSVEHVIVV
                     KRASNDIQMGPKDSWWHDLIENSPSYCEPEVLDSTHPLYILYTSGTTGKPKGVLHSTG
                     GYLTYLYATAKWVFDFRKEDIFFCTADIGWVTGHSYIVYAPLMHGVTEIMYEGTPDYP
                     KPDRYWAIVEKQGATILYTTPTALRMYMKFGNTIPNSFDLSSLRLLGTVGEPINPEVW
                     MWYFKTIGKENCPIVDTWWQTETGATMISTCTGIESVPMKPGSGTFPLPGIDASIVDE
                     NGRPVDLDRKGYLVIRKPWPGMLMTLWEDDERYRNTYWKKFENVYYAGDYALCDADGY
                     LWLLGRSDDVLKVAGHRLGTMELESAFVSYKAIAEAAVTSKPDQEKGESIIAFLVLRT
                     GFLPSDQLHDELVDHVRNTVGPIATPEEIYFVNKLPKTRSGKIMRRLLKSIASGAAIG
                     DATTLEDEASIEEIRQAYNDLHKVVGH"
     gene            3549..3812
                     /locus_tag="VHF08_06295"
     CDS             3549..3812
                     /locus_tag="VHF08_06295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX2068294.1"
                     /translation="MKYRSRTEIVAMILEAANGGATKTKIMYKAFLSYAQLREYLSVL
                     IENSLLEYLEGSQTYKTTEKGLNFLKMHNEIGELLQTSPRQEK"
     gene            complement(3900..4754)
                     /locus_tag="VHF08_06300"
     CDS             complement(3900..4754)
                     /locus_tag="VHF08_06300"
                     /inference="COORDINATES: protein motif:HMM:NF037920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CdvA-like protein"
                     /protein_id="HEX2068295.1"
                     /translation="MSELKLEFVGKQVKDMYGTFIGKVIGIVTDIDGSIESVGVDCGS
                     AGLKHLAYEQLLVQGDYVIYIPRWRLDAQKLLRQKNLTLMRIKALKDIVAENDSMKDD
                     AELIYIKYEKRLNDLEKDEKYVHEKLHERLNELDKESKDVKAVLFDAKLQHRSNEITE
                     DMYQQISIHTNELMEHINLEKSEINNVKTRLTQQTLENNTISTVSDAESTVREMPATE
                     TALQQQQQQQQQEGSVSRQSIAPPQIVGKNVTSNTEEKPVETHADDVDKETSWLNQVI
                     PNNSEIST"
     gene            5185..5907
                     /gene="cbiE"
                     /locus_tag="VHF08_06305"
     CDS             5185..5907
                     /gene="cbiE"
                     /locus_tag="VHF08_06305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046025 - precorrin-6Y
                     C5,15-methyltransferase (decarboxylating) activity
                     [Evidence IEA];
                     GO_process: GO:0046140 - corrin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-6y C5,15-methyltransferase
                     (decarboxylating) subunit CbiE"
                     /protein_id="HEX2068296.1"
                     /translation="MPKKLFVIGVGPGSPKYLTDIAKDTIRQSRYIIGYKYTLTTIES
                     IIDRNRQEVYVVSMKNQENVYQQIHNRMKEGDYCTIPFTGDVNFSESEVVDRLFEIFG
                     DDNVEIIPGISSIQIASAKSRVPLDKAYIVTFHVTGDIEQKKSELVKAIIDGKSVILL
                     PRPWPADPSKKFMQSDIALFLKKNGIDISNLTVWVFEYLTKDDKETVFKGKVVDLEER
                     EFSDLSVMVIDQVKRQTYLHFD"
     gene            complement(6228..6587)
                     /locus_tag="VHF08_06310"
     CDS             complement(6228..6587)
                     /locus_tag="VHF08_06310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068297.1"
                     /translation="MSEMLKDDSLGLVLRGYDLVPNASLATKIAVYTPEVVETILTEH
                     PEIIDQWLQKLHREYIKNKKICDFENDPTACFNLGLYEEFERNLKSWEEGGFIKIMLP
                     VKKAIRVSKSPIFSLAK"
     gene            complement(6703..7209)
                     /locus_tag="VHF08_06315"
     CDS             complement(6703..7209)
                     /locus_tag="VHF08_06315"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="stage II sporulation protein M"
                     /protein_id="HEX2068298.1"
                     /translation="MAFGAIAFLLAYSGGAEVNINKEEAEDVKGEFIKKIEGIDQNGI
                     FINNVMIALVMFIPIVGIGLGIFSGFSTGLVFNALAETSSYLQNVPPLAILLTPFGIM
                     EVFAYSLAISRSGMLTYNLVKKKPWKEYAIHTVIEMGIIVILLIAGAVIEWQMIMQLD
                     GSATLPDI"
     gene            7335..>8116
                     /locus_tag="VHF08_06320"
     CDS             7335..>8116
                     /locus_tag="VHF08_06320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068299.1"
                     /translation="MALQREISNAISYATSKGYQMHPDAFAMLKGLDNDVVKIVQDII
                     KMKIKQNENSLIKVDDIRNHINPEEDKVDIIDFEDIGKIDDTKINKLSTTTAAVIEYS
                     SSFEQNSHKIILDPTPNINTGEGVEGYAALFRSRFEKSHRILALRPESKRIIQIASVK
                     HNTNNAKAAKSYSSRTEGNFVRNPSSVVAGLLMSKRSKKNGIELVIDDYSGTLSALAV
                     TEEIKKLAMTLTLDQMVMLEIDNNNNKSTQGFTIKNLASPDIP"
BASE COUNT         2678 a         1418 c         1321 g         2699 t
ORIGIN      
        1 tatcagctta ttcaagaagg agtaaatgaa ctaacctcta aattatcatg tgttgatgaa
       61 agtaatcctt ctactgctaa tttagtaaag tgggatagca ttaatgtaac aggaatatag
      121 atatcaacaa ctaaaagcat cagtgacgac aaacccagag ataattaata atgaacacaa
      181 tgcaaacaat gaaaaaaaga agaagaagaa gaaagtgatg gcggcaggga gaagtaaaga
      241 aaggaataca gaataatgtc gtcgctgcat ctagaataca tcatcatacg ttcatactat
      301 tgagttgaat ttgttcaaaa tctagagaag cagtttaata atattaacta acaatactaa
      361 ttaattaatt gccgatttta aaagaaagca caggcatgat tttcgtatat gttctttctt
      421 tgtaccaaca catttgtatc aacacaaaaa ttaattgatg tctccttctt cttaacatca
      481 tctttgattg atgattttat atggtttgtt actaaaaaag aatcatctaa tatcatagaa
      541 gtaaaattca aattcttttt gcaagctgta ttaatgactt aatttggttg gaaagatagc
      601 tgttataata ccagtgcttg ttgcagctgt cactatagga tcacttggcc ttgtatttat
      661 tccacaggaa attaaaaata agcagataga ttttgcagaa ggaacgataa gaatagatga
      721 tgatgtaatt aaagtggaaa ttgcagagtc tcgtgcagat aaacagagat ggttaatgtt
      781 tagagaagaa agactcccat tgaattctgc aatgatccta gtttatgaaa aatcagattt
      841 atactctatg tggcttttaa acattgaata taatcttgat ctaatctgga ttaatgaaaa
      901 tggcaatata gtgtacatgg taaaagatgc agaaccttgt aaaaatacat ttgatgcagc
      961 gagttgtacc tataaaaata caaaagctgc taaatacatt attgcggcag catcaggatt
     1021 catagaggag catgacatta ctgaaaaatc aataatgaca ataatttcga tttaatcgtt
     1081 atcattaata ataattttta tcgaaataat acatataatg acgagtttta caaaattaat
     1141 aaaaccctct atgaattaaa atagaataat attcatatat atatatgctg taaacagata
     1201 ggaggagtta ttactagctt tctaatcaaa aaaagtagtc ggaatttaaa tgcattatct
     1261 tacagtgatt taaatcagcc ctcttatcac aagcttgagc acaattagtt agtttgttag
     1321 tgagtttgtt agttagtggc caactacttt atgtaaatca ttataggctt gccttatttc
     1381 ttctattgat gcctcatctt caagtgtggt agcatcacca attgcagctc cactggctat
     1441 ggatttaagc aacctgcgca ttattttacc acttcgagtt ttaggaagtt tgttgacaaa
     1501 ataaatctct tcaggtgttg caattggtcc cactgtattt cgaacgtgat caacaagctc
     1561 atcatgtagc tgatcagatg gtaaaaatcc tgtccgcaac accaaaaatg caattattga
     1621 ttctcctttt tcttggtctg gcttactcgt tactgctgct tccgcaatcg ctttatatga
     1681 tacaaatgca ctttctaact ccattgtacc aagcctatgt ccagctactt taagtacgtc
     1741 atctgatctg cctaaaagcc aaagatagcc gtcagcatca caaagtgcat aatcgccagc
     1801 atagtataca ttttcaaatt ttttccagta agtattgcga tatctttcgt catcttccca
     1861 taatgtcatt aacatcccag gccacggctt tctaatcact agatatcctt ttctgtctaa
     1921 atctactggc cttccgtttt catcaacgat agatgcatct attccaggta gaggaaaggt
     1981 gcctgaacca ggtttcatgg gaacagactc gatgccagta catgtactta tcatagtggc
     2041 gcctgtttca gtctgccacc atgtatcaac aatgggacaa ttctcttttc caatagtttt
     2101 aaaataccac atccaaacct ccggattaat tggttcacct actgtcccca atagacgaag
     2161 agaagataga tcaaacgaat tagggatagt atttccaaat ttcatataca ttctaagagc
     2221 agtaggagtg gtgtatagaa ttgttgcacc ttgtttttcc actatggccc aatatctgtc
     2281 aggttttgga taatcaggag tcccttcata cattatttcg gtaacgccat gcatcaatgg
     2341 tgcgtaaaca atgtaactgt gtcctgtcac ccatccaata tctgcagtac aaaagaaaat
     2401 gtcttccttt ctaaaatcaa aaacccattt agctgttgca tacagatatg taagatagcc
     2461 accagtacta tgtagcaccc cttttggctt tcctgttgtt ccagaagtat atagaatata
     2521 caaaggatga gtgctgtcta gaacttctgg ctcacaatat gatggcgaat tttcaattaa
     2581 atcatgccac catgaatctt ttggccccat ctgaatatca tttgatgctc ttttcactac
     2641 tataacatgt tctactgaag gtatagatga aatagcatca tcaacaagtc ttttcagttg
     2701 gataagcttt cctcttctgt agccaccatc agcagttatt ataatttttg atttcgaatc
     2761 atttgcccta tcagctaatg cctgagcgct aaatccagag aaaacaacag tgtgaattgc
     2821 gccaattctt gaacttgcta acattgcgat cggaagctga ggaatcatag gtagataaat
     2881 tgtgatccga tcgccttttt tgaccccgag attttttaga gcattagcta atttgttaac
     2941 ggagcgatat aattgataat aggtaaatga gttggtttcg ccattttcac cttcccagat
     3001 tatggctacc ttgttttttg catcagaatc gatgtgtcta tcgagacagt tgacagatgc
     3061 atttagtttt ccaccaacaa accattttgc aaatggagga ttccaatcaa gtactttatc
     3121 ccattctttg aaccatttta gatattttgc ctgttcttcc caaaattctt ctgaattctc
     3181 caatgcctgc tttcttattt tagaaagctt ttttccttct aaactcactt taattttttc
     3241 gctgtcttca tatatttttg ataacgtgtc aaattgagga tcggacattt acataaagaa
     3301 gtacaaatat agttttaaaa gcatttaggc tccgtaataa tcattatttt agtaacgtga
     3361 ccgtgaaaaa ttttcatatt aaatttcgcc ttactatgga attatagtat caacatttat
     3421 tagatcatct ttatggatcc gattacaatt aacttaatta tcaaggtcaa aatgtattat
     3481 aaatctataa cattattctg ttataatgtg tcaatatatt aaaataaaga aattcagtgt
     3541 agtttgttgt gaaatacaga agcagaacag aaatagtagc aatgatctta gaagcagcaa
     3601 atggtggagc aacaaagaca aaaattatgt acaaagcatt tctgagctat gcacagctaa
     3661 gggaatatct ttctgtgctc attgaaaaca gtttactaga gtacttggaa ggttctcaga
     3721 cttacaagac aacagaaaaa ggattaaact ttctaaaaat gcacaacgaa attggcgagc
     3781 ttctacagac atcaccaaga caggaaaaat gatctaaata aatcattttt tacattttct
     3841 ctacttttat tttttattta acatttttct ttttttaata tttaactctt atattttctc
     3901 tatgtactaa tttcagaatt attaggaatt acttgattta accaactcgt ttccttatca
     3961 acgtcgtcgg cgtgtgtttc aactggcttt tcttcagtat tgcttgtaac attctttcct
     4021 acgatctgtg gcggagcaat actttgtcta gagacagaac cttcttgttg ttgttgttgt
     4081 tgttgttgtt gtaaagcagt ttcagtagca ggcatttccc ggacagttga ttcagcatct
     4141 gatacagtcg atatcgtgtt attttctaag gtttgctgcg taagtcttgt cttgacatta
     4201 ttgatctcag acttttcaag gttaatgtgt tccatcaatt catttgtatg tatgctgatt
     4261 tgttgataca tatcctctgt tatttcatta cttctatgct gtagctttgc atcaaacaat
     4321 actgctttta catctttgct ttctttgtcc aattcgttta acctttcatg caatttctca
     4381 tgaacatatt tttcatcctt ttcaaggtca ttcagtcgtt tttcatattt tatgtaaatt
     4441 aattcagcat catctttcat tgaatcgttt tctgcaacta tatccttaag tgcctttatc
     4501 ctcattagag taagattttt ctgtcgcagt agtttttgtg catccaatcg ccatcttgga
     4561 atgtagatta cataatctcc ttgaactagc agttgttcat atgctaaatg ttttaaacca
     4621 gcagaaccgc aatctacacc aacagattca attgaaccat caatatctgt tactataccg
     4681 attacttttc ctataaaagt accatacata tccttgactt gtttgccgac aaattcgagc
     4741 tttagttcgc tcatgtaaag cctttggaag atagatataa tggcaacatt gtcaaaatta
     4801 ttgtgtaaat tggtaagacg attttgcctg atagaacact agtgataaag atacaacaac
     4861 gacaactttt ctcttctatc aaattaatgt tgtataatat tattgggcta ggggttatta
     4921 taacaaaatg agtttggata tgtatggcaa aattgaatct gtaattattt ttactttgta
     4981 gaataaaatt ccactctgaa atggatcatg atacacgacg tatatatata tattgcatga
     5041 ctaaaaaagt aatcatctag ggtcttgatg gttattatta tgccagagta aaagcaactg
     5101 taaatacata tgcgaaacat ttcacaagca acaaattctc tctaaggttt taaagtctgc
     5161 tttattgctt atatctataa tagaatgcca aagaagctat ttgttattgg tgttggtcca
     5221 ggctccccaa aatatttgac agatatagct aaagatacca ttcgtcaatc acgctatatt
     5281 ataggatata agtatactct gactactata gagagcataa tcgatagaaa tagacaagag
     5341 gtttatgtgg ttagcatgaa gaatcaggaa aatgtctatc agcagataca taatagaatg
     5401 aaggaaggtg attattgcac gataccattt acaggcgacg tcaatttttc agaatcagaa
     5461 gtagtcgata gactatttga aatttttggt gatgataacg tcgaaattat tcctggtatt
     5521 agctcaattc agattgcctc agcaaaatcc cgagttcccc ttgataaggc atacattgtt
     5581 acttttcatg taacaggcga tattgaacaa aaaaaatctg aattggtcaa agctataatt
     5641 gatggaaaaa gtgtaatatt attaccacga ccttggcctg cggatccctc aaagaaattt
     5701 atgcaatcag atattgcctt atttttgaag aaaaacggaa ttgacatttc aaatcttaca
     5761 gtctgggttt ttgaatatct caccaaagat gataaagaaa ctgtcttcaa aggcaaagtc
     5821 gtcgatttgg aagaaaggga atttagtgat ctttctgtta tggtaatcga tcaagtaaag
     5881 cgtcagacat atttgcattt tgattgagga ctagacatta tttccttata atagcaatta
     5941 cttgtggaat tgatagccac tagttaaata tgtatacaaa tgctgccatt ttccattacg
     6001 ttctctaaat aactcatttg atgatgttcc atgaaccttt tacgctattc ttttcttctt
     6061 cttcttctac ttcttcacaa tttctattta tcaaataact taactattcg aacaaatatt
     6121 atttattata aggtttcttg ctgtacaggc acagattaaa tctgtataat caaatttgaa
     6181 atgattgagg gaatgtgcta acaagcatca gtattgtcag aaacacccta ctttgcaagt
     6241 gagaatattg gactcttgct tacccggatc gctttcttta caggtagcat tatctttatg
     6301 aatcctcctt cttcccaact tttaagattt ctttcaaact cttcgtatag tcctagatta
     6361 aagcatgcgg tgggatcgtt ttcaaaatcg cagatttttt tattttttat atattctcta
     6421 tgcaattttt gcaaccattg atcaattatt tcaggatgtt cagtcaaaat agtctctaca
     6481 acctcaggag tgtagacagc aatcttggtt gcaagtgagg cattgggaac taggtcatat
     6541 cctcgtaaga ccagcccaag agaatcatcc ttcagcattt cagacataag taatatatag
     6601 attttcgaat tattaaacta ttactttata acattacaat taatatatta taacaatgaa
     6661 aataacaaga aataatgctt tactagacag tttattaaaa aattatatat caggtagagt
     6721 agcagatcca tcgagttgca ttatcatttg ccattcaatt acagcgccgg ctatcaaaag
     6781 aattacaata atccccatct caataacagt atggatagca tattctttcc atggtttttt
     6841 ctttacaaga ttgtatgtaa gcataccact tctagatatt gccaagctgt aagcaaatac
     6901 ttccataatt ccaaaaggtg tgagtaaaat tgctagtgga ggaacattct gaagataaga
     6961 agaggtttct gccagtgcat tgaataccag ccctgtagaa aaaccagaaa atattcctaa
     7021 tcctatccca actatgggaa taaacataac aagtgcaatc atgacgttat tgatgaaaat
     7081 tccattttga tcaatacctt ctattttttt tataaattcc ccttttacat cctctgcttc
     7141 ctccttgttt atattaactt cagctccacc agaataagca agcaaaaagg caattgcgcc
     7201 aaatgccaaa tatataaagc gccgtttaaa gttaaaacgc aacgtgcaga tatgacattt
     7261 tattctataa ttagttttgt caattataga aatataatta aatatgatat ccaaagtaaa
     7321 atcagttcag caccttggcc ttacaaagag aaatttctaa cgcaatatca tatgccacta
     7381 gcaaaggata tcagatgcat cctgatgctt ttgcgatgct taaaggtctt gataatgatg
     7441 ttgtaaagat agtacaagac atcatcaaaa tgaaaatcaa acaaaatgaa aattctctta
     7501 tcaaggtaga tgatatcagg aatcatatta atccagaaga agataaagta gatatcattg
     7561 attttgagga tattggtaaa attgatgata ctaagatcaa taaactatca acaacaacag
     7621 ctgccgttat agaatattct tcttcttttg agcagaattc tcataaaata atcttagacc
     7681 caactcctaa tattaacact ggagaaggag tcgaaggtta tgctgcactc tttcgtagtc
     7741 gctttgaaaa gtctcatcgc atcttggcat tacgaccaga aagtaaaaga attatacaaa
     7801 ttgcatctgt gaaacataat acaaataatg caaaggcagc aaagtcatat agcagcagga
     7861 cggaagggaa tttcgtcagg aacccttctt ctgttgtagc tggtttgcta atgtcaaagc
     7921 gttcaaaaaa aaatggaata gaattagtaa ttgatgacta cagtggaaca ttgagcgcac
     7981 ttgcagttac cgaagaaata aagaaacttg ctatgacact tacgcttgac cagatggtca
     8041 tgctagaaat cgataataat aataataaat ctacccaggg tttcactata aagaatctag
     8101 cttctcctga tattcc
//
LOCUS       DATAAS010000389         2200 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3645539, whole genome shotgun sequence.
ACCESSION   DATAAS010000389 DATAAS010000000
VERSION     DATAAS010000389.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2200)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2200)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2200
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3645539"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(851..1090)
                     /locus_tag="VHF08_06325"
     CDS             complement(851..1090)
                     /locus_tag="VHF08_06325"
                     /inference="COORDINATES: protein motif:HMM:NF025392.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-binding protein"
                     /protein_id="HEX2068300.1"
                     /translation="MPLFLDAHSMKDFDEETLQKAQNSPIDEFGVKHQNILYNTEADK
                     IFCLLEAPNKEAVKEHHEKKYGIKCEWIMEVKTTA"
     gene            1782..1967
                     /locus_tag="VHF08_06330"
     CDS             1782..1967
                     /locus_tag="VHF08_06330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068301.1"
                     /translation="MSLFQAVCVCRRRQQQQQPATETMTYHVILSSTIVFAADDTYTN
                     SSKRNKNSTIELFIVKC"
BASE COUNT          770 a          343 c          337 g          750 t
ORIGIN      
        1 tattattaac aactaatatt aataaaaata tatttctata ataattaaaa tgtgttctta
       61 tttactaact gtaattatga tttagttatc tttcctgaag ttaaagatgc agtcttgata
      121 gttaataaca tttaacccaa ttctatagat gataagacaa caacaacaaa gtaattctaa
      181 aaacaaatga gaaatagatg atacaagatt atattgtata ctattgagat atctcaacca
      241 gccagcctct cggtctagga aaaaagagtt atcattggag ataatatagg tgtgcgcctg
      301 acatcatgat ataacatcta ttcatcaatt actacgataa ccttttacga cacatagtgt
      361 atatttcatc aatggaaaag agtatctgtt acctatgcaa ttcgacaaca ttcgtaaaga
      421 tatgtcctac atgtagcagg cctgcctgta aaagctgtat gaagagcttt ccgttctctg
      481 ctaatgtatg tctagaatgt gcagctggag tcaagactgg cttggcaggt ataagaaagg
      541 atgaggaaat attttagcac ttgccatgat attccaataa taataacaat ataataatta
      601 cggaaaagaa ttagccattc tatattttta aattttttag catgacaaat acttgtatag
      661 agtatgcttg acatagagga tacattatgt tgctattgaa tgaattagga agccagattc
      721 actacggtag ataattaagc tcagccacac cttgtgacag tcgtatttgt attcaatggt
      781 aaatacatct attgttgtat caatctatat ctatttactg aaattgttat caataacaca
      841 cacgttgcta tcaagcagta gtttttactt ccataatcca ttcacattta atgccatatt
      901 tcttctcatg atgctcttta acagcttctt tatttggagc ttcaagtaaa caaaatattt
      961 tgtccgcttc ggtattatag agaatatttt gatgtttaac accaaactca tctataggcg
     1021 aattctgtgc tttttgtaga gtctcctcat caaaatcttt catagaatga gcatctagaa
     1081 acaatggcat atacaggaat ttagaactat catttgaaaa ttaataaact tttttctgca
     1141 tatttatttt caatgagatt aaagcaacga tatattttcc ttgcagaatt ataaattagc
     1201 caatatttat tgatggatat agattttact gttacaagct gaaagtaaat tattactctg
     1261 tagagataac ttgatatctg caagtcacat aagtaactga aaatgtaact tctagaatag
     1321 tagcccattc acatgatata gctgagagta tatagaaggc tagttacaag acagatagaa
     1381 ggaccattta agaaatggaa aagtattcag gaatttcaat gcagttgcat atattgctgc
     1441 actaaatatc tggatatgtt ctcctaattg cacatttgca acatcacata cagtaatttg
     1501 ttaattattg ttgagaatta tataatagcg gcatgattga tgagtttatg tatttgttcc
     1561 ttcagtggta ttatgaaata aaagcaaaga aaaataccgc ttgtcaatct ctaaataatc
     1621 atattattta ccatatatta agatctacta ctacttttga tattaacttt agtagcaaaa
     1681 tctttttcaa gtagctataa agaactatca tcagcaacaa gcaacagcag tagaggactc
     1741 aatgaaagga gggaacaaca gaaaaccacc tcgccacgct tttgtcgttg tttcaggctg
     1801 tttgtgtgtg tagacgacga caacaacaac aacaaccagc gactgagaca atgacttatc
     1861 acgtgattct atcctctact atcgtctttg ctgctgatga tacatatact aatagtagta
     1921 aaaggaataa aaattctact attgaattat ttatagtaaa atgctgaaaa agattagtat
     1981 tcctattata gcaggcttgt ttctgtggta tttatccttt aaatgtatag ttattacaag
     2041 tttctgttct attaaaagta tacatgcata cttcattata tatatgccat actccaaatg
     2101 aatcaatagt cttttcatag tgtaggtaat ctgagtattt tctctttttc ctgccgatat
     2161 ataaaaagat atgctttatc ctcctttata gaaagaactt
//
LOCUS       DATAAS010000390         2523 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5274260, whole genome shotgun sequence.
ACCESSION   DATAAS010000390 DATAAS010000000
VERSION     DATAAS010000390.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2523)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2523)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2523
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5274260"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            723..884
                     /locus_tag="VHF08_06335"
     CDS             723..884
                     /locus_tag="VHF08_06335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068302.1"
                     /translation="MNTFRSIVAVNDSLKIWNGSYQVIFHYLISWYYVVAATSGAWLG
                     ILVSSRAVR"
     gene            complement(1140..1535)
                     /locus_tag="VHF08_06340"
     CDS             complement(1140..1535)
                     /locus_tag="VHF08_06340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068303.1"
                     /translation="MGRWDDQFGEFGGGGIAPKRNYIRIAKFVILVGFIIVAVVVLSV
                     FIPRAGLNVEIIERGGIIGSIVVKINNNNFDTLNDVIVQFGEQGKIHRIDKMGPFSSV
                     MITPDSQELNFDKVIVKANNGKIETIKFR"
     gene            complement(1917..2252)
                     /locus_tag="VHF08_06345"
     CDS             complement(1917..2252)
                     /locus_tag="VHF08_06345"
                     /inference="COORDINATES: protein motif:HMM:TIGR01384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006351 - DNA-templated transcription
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor S"
                     /protein_id="HEX2068304.1"
                     /translation="MKFCPKCETRMRPKIEEGIVLCPKCGFSVDKEKVEISVKENTVS
                     SMENTEYSLKVIDTDKSPDTLPTTTIECPKCKNNNAFWWMLQTRSADEATTQFYRCTK
                     CSHTWRNYS"
     gene            complement(2269..>2523)
                     /locus_tag="VHF08_06350"
     CDS             complement(2269..>2523)
                     /locus_tag="VHF08_06350"
                     /inference="COORDINATES: protein motif:HMM:NF025040.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpoL/Rpb11 RNA polymerase subunit family
                     protein"
                     /protein_id="HEX2068305.1"
                     /translation="KDSQLELKLQEEDISIMYIIQHELLKERSVEFAGVTLKHPLIKE
                     YVVRITTKKKDPLEAVQEASVSASEHIKELTSALKTALKK"
BASE COUNT          778 a          434 c          375 g          936 t
ORIGIN      
        1 aaaatagtta ttaacacacc tgtctacaac catgcatatc aaggttgtga tattatggtt
       61 tcttaaataa tataaccaaa tattctgaat atatatatac atatatacat atatatatat
      121 atatatcaat aatcacgtaa gtcttggaaa aagatcttat actactaaat cttcttgctc
      181 atgttctttg atcttccaaa tccagaattt actgttttac aacctttcaa ataacctttc
      241 tcttctgcat ttgatggtga gatactttat gaacaaattt ttacaaattc ttgaatgtta
      301 ctattctagt atttataacg gacacaactt tagatctaat tgacaatgtt ttcaacattt
      361 attaaatttt aagatttgat atactttgtt gttatggggt tttgtatgta aagtaatgat
      421 gggatcttag gacaaaagta gaaacagaaa taactttgaa gacatagcca gcgatctact
      481 aataatatct tattttattt tcattttgca ctttgcactt atataacata tcatttcttt
      541 taggcaattc acattttatt tgcggaatac attttattac atttgaaaac attattcaac
      601 tgcttatggc aaaatgcaat cattacagag ccctgactac ctacgctgat aatctctata
      661 gtaacatata gaaatttgat caaaagaatt ggagattgtt tcaaagtata aaggaacttt
      721 taatgaatac ctttcgtagt atcgtagctg taaatgactc attgaaaata tggaatggtt
      781 cataccaagt tatttttcat tacctgatct catggtatta tgttgttgcg gctacctcag
      841 gtgcatggct tggaattctt gtatcatcta gagcagtcag ataattgtag aggactatgg
      901 gtcaagtaag aggagagcca ctgctggcat aatgtcctgt gaatttcaga aacatatatg
      961 aaagaaatta ttcgaaattg tgaaaaaaag agtgatattc aactacagta aattcaattg
     1021 aagattatca tgagggattt tatagaatat tgagagaaat ctatattgta tactcttttt
     1081 tatttaccac ggcattagct ttatctttta ctgctgttat tcgaattaaa gtgcaactgc
     1141 tatctaaact tgatagtctc gatcttacca ttattcgctt ttactattac tttatcaaaa
     1201 ttcaattcct gtgagtcagg tgtaatcatt acagatgaaa atggacccat cttatcaatc
     1261 ctgtgaattt tgccttgctc tccgaattga actataacat cgtttaatgt atcaaagtta
     1321 ttgttattaa tttttacaac tattgatcca attatcccgc cgcgctctat aatttctaca
     1381 ttcaaacctg ctcttggtat aaataccgat agaacaacca ccgctactat gatgaatcct
     1441 acaaggatta caaacttggc aattctaatg taattccttt ttggtgctat tcctcctcct
     1501 ccaaattcac caaattgatc gtcccatcgt cccatcaaag aagttaatat tcctctcctt
     1561 gctttatgta ttacgtgtgg tctgtatttt gttatgaaag tgattattgt ctattagata
     1621 gcactgatat gccgtttttc cattgattta atagagtatg tttctattat tgacattaag
     1681 aaaaagaatg atatcttttg acctgccatt gcttctatta atttatcccc attgctattt
     1741 cctcttgata taagtacatc aaaattgtgc ctaatcgcac tactaaaagg actagttgat
     1801 tgtagtgtgg ataagatata tagtttagga catagcgcta ttttatatca tagaagtcat
     1861 atctagactt ggattattcc ttgggcgata aatactagaa ataggttgaa gaattgttaa
     1921 gaataatttc tccatgtgtg actgcatttt gtgcatcggt aaaattgtgt agtagcctca
     1981 tcagcagacc ttgtctgtaa catccaccaa aacgcattat tatttttaca ttttggacac
     2041 tcgatagttg tcgtaggtaa tgtatcagga ctcttatcag tgtcaatgac cttaagcgaa
     2101 tattctgtgt tctccattga tgatactgtg ttttccttca ctgatatttc cactttttct
     2161 ttgtctactg aaaaaccaca tttgggacaa agaacaatgc cctcttctat ttttggcctc
     2221 atacgcgttt cgcatttagg acagaatttc acctataaaa tcactcctct actttttcaa
     2281 tgctgtcttc aaagcactgg taagttcctt aatatgttct gaagcagaaa ctgatgcttc
     2341 ttgaactgct tcaagtggat cttttttctt agttgtgatt ctaacaacat attcttttat
     2401 aagtggatgt ttgagtgtta ctcctgcaaa ttctacactt ctttctttca aaagctcatg
     2461 ctgaataata tacataattg aaatatcttc ctcttgaagt ttcaactcca gttgactatc
     2521 ctt
//
LOCUS       DATAAS010000391         2806 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_414615, whole genome shotgun sequence.
ACCESSION   DATAAS010000391 DATAAS010000000
VERSION     DATAAS010000391.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2806
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_414615"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            209..1543
                     /locus_tag="VHF08_06355"
     CDS             209..1543
                     /locus_tag="VHF08_06355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphatase/phosphodiesterase
                     family protein"
                     /protein_id="HEX2068306.1"
                     /translation="MVRHIIILDIVGLESNHLNSNLIPNIAGLANEGVTFKMEPVFPA
                     VTCTVQASLLSGHYPNQHGIISNGLYDKANYAVSFWEQSNSLVQAERIWDIAKRQNNS
                     SFKTAVLFGQNTMYSKSDIVITPRPLHMEDGIVMWCYSKPVGYYETLKRKYGEFNLAT
                     YWGPLASYKSSNWIIQAACDTLENERPNLMFTYIPHIDYSAQRFGKNSKEVREDLKRA
                     DELVGEIIQKTIDLGIKDDTQFVIFSEYGFNDVRYHIPLNRKLRDAGLLSVRTINDKE
                     YIDFEFSKAFAMVDHQIAHVYIKDVSAEQIKRVLERIDGVDRVLSAQDMKTLKINHER
                     TGDLIAVANKDTWFSYYWWYENEKAPNFARAVDIHRKPGYDPAELFIDQNTKSIPLNP
                     NRIRASHGRPPNRATEEGLAVYVSNQKSDISRNSQGIVGCVDIGRYLINLVS"
     gene            1581..2432
                     /locus_tag="VHF08_06360"
     CDS             1581..2432
                     /locus_tag="VHF08_06360"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase family
                     protein"
                     /protein_id="HEX2068307.1"
                     /translation="MTYKYSITLSSFRHIESIEKTLDRLVYQGYDAVEMYGEPDKLDI
                     RAIRETFSCFDITVCGITGMWGSSGRDDAHKRKLISRYQSILKHSKEYVKRCIKLCHE
                     LGGKELNLCLFADDELATFDRNHIILPDIKKIRVIQNVLLPILYELTRFADDYDIMLL
                     LEPLNRYSTPYCTTAKDAVYIAKQVNHTNFGILLDTFHMNIEEDSFEYAILTSANLLR
                     HTHFADNNRKMPGYAHIDFKLVLGSLNRVKYNGYISFEPILNNDYLTSTQQGLNFIKS
                     IVRNKCT"
BASE COUNT          983 a          432 c          527 g          864 t
ORIGIN      
        1 atttaataat tggtcaatat taatgcaaac ttcgattatt gttattgctt tgtgttataa
       61 aaagccatac acagacactt gtatatatta tcgattgatt actctaattg taatacatca
      121 atttttttga aaacagttat tatatcacat aggagaaaat attttaaaga tatatgtcga
      181 tatttacaac caagatggag cgaagttatt ggtaaggcat attattatcc ttgatattgt
      241 tggtttagaa tcgaatcacc taaattcgaa tcttattcca aatattgcag ggcttgcaaa
      301 tgaaggagtg acttttaaaa tggaacctgt ctttcctgca gtgacatgta cagttcaagc
      361 tagtttattg tcgggacatt atcctaacca acatggtata atatctaatg ggttatatga
      421 taaagccaat tatgctgttt ctttttggga acaatcaaat tctttagttc aagctgaaag
      481 aatctgggat atcgcgaaaa gacaaaacaa ttcttccttc aagactgctg tcttattcgg
      541 ccaaaataca atgtattcta aatctgatat cgtcattact cccaggcctc tacatatgga
      601 agatggcatc gtaatgtggt gctattctaa accagttggt tattatgaaa ccctaaagcg
      661 aaaatatgga gaatttaacc ttgcaactta ttggggtcct ttagcgtctt acaaatcaag
      721 taattggata atacaggcag cgtgtgatac gctcgaaaac gaaagaccta atctgatgtt
      781 tacttacatt cctcatattg attattcagc acaaaggttc ggaaagaata gtaaggaggt
      841 aagagaggat ttgaaaagag ctgatgagtt ggtgggagaa ataatacaaa aaacaataga
      901 tttagggatt aaagatgata cacaatttgt tatattctct gagtacggat tcaatgatgt
      961 tcgatatcat ataccattga ataggaaact tagggatgca ggtttacttt cagtaagaac
     1021 aataaatgac aaggaataca tagattttga atttagtaaa gcgtttgcga tggtcgatca
     1081 tcagatagcg catgtatata taaaagatgt ttccgctgaa caaattaaaa gagtacttga
     1141 aagaattgat ggagtggata gagtgctttc agctcaagat atgaagacat tgaaaattaa
     1201 tcacgaacgt actggtgatc taattgcggt agctaataaa gacacgtggt ttagttatta
     1261 ttggtggtac gaaaatgaaa aagctcctaa tttcgcgagg gccgttgata tacatcgcaa
     1321 acctggttac gatcccgcag aacttttcat tgatcaaaat acaaagtcca taccactgaa
     1381 tcctaatagg ataagagcat ctcatggaag acctcctaat agggctactg aagaaggact
     1441 agcagtctat gtatcaaatc aaaaatcgga catttcaagg aattctcaag gaattgttgg
     1501 ctgtgttgat attggtagat acctaatcaa tctggtttct tgatcttatg gtaatattgt
     1561 ataggatcct gtcctgacag atgacttata aatattctat tacactttcg tctttccgac
     1621 atattgaatc tatagaaaaa acacttgata gattggtata ccaaggctat gacgcggttg
     1681 aaatgtatgg tgaaccagat aaattagaca taagagcaat aagagagaca ttctcctgct
     1741 ttgatattac tgtttgtggc ataacaggaa tgtggggatc gtcaggtcgt gatgatgcac
     1801 ataagagaaa acttattagt cgctatcaaa gtatcttaaa acattcaaaa gaatatgtaa
     1861 agcgttgtat aaagctatgt catgaattag gtgggaaaga gcttaatcta tgcctctttg
     1921 ccgatgatga acttgcaaca tttgatagga atcatattat acttcctgat attaaaaaaa
     1981 tacgcgtaat acaaaatgtg ctactgccta ttctgtatga actaacaagg tttgctgatg
     2041 attacgatat aatgcttcta cttgagccac tcaacagata tagtacacca tactgtacta
     2101 ctgcaaagga tgcagtttat attgcaaaac aagttaatca cactaacttt ggaatattgc
     2161 ttgacacttt tcatatgaac atagaagaag attcatttga atatgcaata ctcacttcgg
     2221 caaacctatt acgtcatact cactttgccg acaataacag aaaaatgccc ggttatgcac
     2281 acattgactt taaattagtt cttggctcgt taaaccgtgt aaaatataat ggctatatta
     2341 gctttgagcc aattctgaat aatgattatc ttacttctac ccagcaggga ttaaatttta
     2401 tcaaatcgat agtgagaaac aaatgcacat aagactaata taataaatat tttgcaactt
     2461 taaaaataaa agtcgggcta gggaagctaa agcgaacacg gatgaatttg aaaaattacc
     2521 aataatgaaa gaaactttct gattagaaaa gactttaagg ctaaacgatt aatatactga
     2581 tgaataaatt ttatcatgaa gagtatcatt taattagtat acaggtacta tcaatgaatc
     2641 tcaggtaaag agtatgttta tccataaaac cgccaagtcg cgatgtgctt cagaatttgc
     2701 acgagacgtc ggtgaaggct tgcggagatc gaggaaaaaa ataaagccga tgtattttta
     2761 tgatgaatta ggctcattac ttttcgagaa aatttgtctt caggaa
//
LOCUS       DATAAS010000392         1836 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4738360, whole genome shotgun sequence.
ACCESSION   DATAAS010000392 DATAAS010000000
VERSION     DATAAS010000392.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1836)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1836)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1836
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4738360"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(103..321)
                     /locus_tag="VHF08_06365"
     CDS             complement(103..321)
                     /locus_tag="VHF08_06365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068308.1"
                     /translation="MRHNLKLAVNTLGYGLQLNHLSDRTVFGCHILLEGNMFTAEYFL
                     SSLVKEYGKLSVSTDGVVDGIHHKLVNS"
     gene            complement(693..887)
                     /locus_tag="VHF08_06370"
     CDS             complement(693..887)
                     /locus_tag="VHF08_06370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068309.1"
                     /translation="MASQTKTKLYKVESKSTKTGVKTYRHSIFLEKAFVEDSLFPFKP
                     GENLIVRIDKDRLIITKLKD"
     gene            1004..1216
                     /locus_tag="VHF08_06375"
     CDS             1004..1216
                     /locus_tag="VHF08_06375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068310.1"
                     /translation="MNLRISTIKNRRSRRNKVMLYLHQCKQCGVLFERVGKAAASATV
                     GGFSWDKKFMIDKCDTCKSFGFCDIF"
     gene            1245..1514
                     /locus_tag="VHF08_06380"
     CDS             1245..1514
                     /locus_tag="VHF08_06380"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068311.1"
                     /translation="MSTNITIQHRAIIAKLIEDCYEEQDIDKKVQILYKINSLLPKTC
                     CINIPSLITDDYIHAALYRIEENIHGIIAAMAYTDPYNDKKLKPS"
     gene            1526..1711
                     /locus_tag="VHF08_06385"
     CDS             1526..1711
                     /locus_tag="VHF08_06385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068312.1"
                     /translation="MVYTIVENKRVMRFILNIQKGLCYFCSKEITPTDSVISRGVGRQ
                     KKKYYHNKGARIVHIIT"
BASE COUNT          669 a          262 c          287 g          618 t
ORIGIN      
        1 ttaaatatag ctggattagt ctatgaaagg taaatacttc tacaagacaa caagccaatt
       61 gaaaatttat taaggaggaa tgcagatgat gatgattcat cttcaggaat ttacaagctt
      121 gtgatggata ccatctacca caccatcagt tgaaactgac aattttccat attcttttac
      181 taaggaacta agaaagtatt ctgctgtaaa catattacct tctagtaaaa tatgacaacc
      241 aaaaactgtt ctatctgaga gatgattcaa ttgcaatcca tatccaagag tatttactgc
      301 caactttaag ttgtgtctca tttactataa actcaagaat cctttttctt taggcaaata
      361 ttctttcagg tttgtatttc tgcacccatt tacagatggc aacatgactt gttcttttct
      421 taattcggga tgataatgct tcttttgcag gatttctata agatagacca ataaagtaca
      481 aatataatcc atatgtatca tcttcgaatg atgttctatt ttttataaaa gatattaaag
      541 aaataatgca aggttttcag ctataatctt ttgttaagtt aacagcactt taatattgca
      601 aaacaataat aatggatatc tcttcagtat actgtaccta tttgctttgc tttacgtcat
      661 attccttatc tatcgtaata taaaaatttc ttttagtctt tgagctttgt aataattagc
      721 ctatctttat ctatcctaac aattaaattc tcaccaggtt tgaaaggaaa taagctatcc
      781 tcgacaaagg ccttttctag aaatattgaa tgtctataag tttttactcc tgtttttgtg
      841 gatttagact caaccttata taattttgtt ttagtctgag aggccatatt aggttgctac
      901 acatatcttt ggaatataga tatatataag tatatacata aaaagttttt ataaatatac
      961 attagtataa tatcttttta tactttatta cctatacata agtatgaact taagaatatc
     1021 tactatcaaa aacagaagaa gtagaagaaa taaggttatg ttatatcttc atcaatgcaa
     1081 gcaatgtggc gtactgtttg aacgcgttgg aaaggctgct gcttctgcta ctgttggtgg
     1141 attttcatgg gataaaaagt tcatgataga taaatgtgac acatgtaaaa gtttcggatt
     1201 ctgtgatatt ttctagaaga atataggagg ggataacaaa aaaattgagt acgaatataa
     1261 caatacaaca tcgtgctata attgcaaaac taattgaaga ttgctatgag gaacaagata
     1321 tagataaaaa ggttcaaatt ttgtacaaaa taaattcact actccctaaa acatgttgta
     1381 ttaatatacc ctcattaatt actgatgatt atatacacgc agcattgtat agaatagaag
     1441 aaaatataca tggtattatc gcggcgatgg catatacaga cccatacaat gataaaaaat
     1501 taaaaccgtc ttaggataac aagaaatggt ttatacaata gtagaaaata aacgtgtaat
     1561 gagatttatt ttgaatattc aaaagggact ttgctacttt tgtagtaagg aaattacgcc
     1621 tactgattct gtgattagta gaggggtagg tcgtcaaaaa aagaaatact atcataacaa
     1681 gggcgctcgc atagtacata ttattactta gcatgtaaaa ttaaaatagt tagaatacca
     1741 tgctatattg gagaaaataa aagatgggta gaacagagaa aaatattctt ggcaaaaatg
     1801 ctccagtact aatagatctc ttaaagaaag catatt
//
LOCUS       DATAAS010000393         7769 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2038384, whole genome shotgun sequence.
ACCESSION   DATAAS010000393 DATAAS010000000
VERSION     DATAAS010000393.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7769)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7769)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7769
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2038384"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..2278
                     /gene="uvrA"
                     /locus_tag="VHF08_06390"
     CDS             <1..2278
                     /gene="uvrA"
                     /locus_tag="VHF08_06390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEX2068313.1"
                     /translation="YPRLDRQKKHTIEVIVDRLKVMTEEKSRLFESVQSALKIGNGIV
                     IASIDSEDTLYSQRNACPYCGISLGDLEPRSFSFNSPFGACRDCNGLGIKIEFDPELI
                     IPDKSKSILDGAVKPWSGYFATFRSEMLRDVGKHFGFNLYTPISKMTEDQIRVILYGT
                     DDKIHYKYEGKYSSSRWEFRGSFEGVIPNLERLYKQTESESKRDEIMQFMRERTCDSC
                     LGRRLRREALSVKIQEKSIMDICDLSIDNCYRFFRTIQLSETERYIARTILKEIISRL
                     EFLNNVGLNYLSLNRVTATLSGGESQRIRLATQVGSNLTGVLYVLDEPTIGLHQRDNA
                     KLIDTLKKLRDLDNTLLVVEHDEEVIRNADWIIDIGPGAGMRGGEIIAYGVLENILDN
                     KNSVTGAFLRGDLLVSYPKQERKIPERWLTIYGAQENNLKSIDVKFPIGCMTVVTGVS
                     GSGKSTLVNDILFKVLAAHFYNTKEKPGKHRNISGLEYVDKVIGIDQSPIGRTPRSNA
                     ATYVNAFTPIRELFAKTSQAKEMGYKSGRFSFNVSHGRCEACQGGGVRKIEMQFLPDV
                     YVTCDECKGKRYNSETLSVKYKEKTISDILNMTVDEASEFFENISIIEKKLRTLKDVG
                     LGYIRLGQPATTLSGGEAQRIKLAAELSKRDTGKTVYILDEPTTGLHFADVSKLLHVL
                     KRLQDLGNTIIVIEHNLDVIISADWIIDLGPEGGEGGGKIVATGPPHEVAENKESHTG
                     KYLKYKLAIDQIIQRGAS"
     gene            2341..3966
                     /gene="uvrC"
                     /locus_tag="VHF08_06395"
     CDS             2341..3966
                     /gene="uvrC"
                     /locus_tag="VHF08_06395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009380 - excinuclease repair complex
                     [Evidence IEA];
                     GO_function: GO:0009381 - excinuclease ABC activity
                     [Evidence IEA];
                     GO_process: GO:0006289 - nucleotide-excision repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEX2068314.1"
                     /translation="MPQDPGVYLMKNKEGKIIYIGKAKNIRKRLKSYFLLSKNNNTNN
                     NNWKTSRLISNVADIEFVLTDNEIEAFLLESNLIKRFRPLFNIELKDQQRYTYLKITD
                     EVFPRLLVARRNRNGEFHGPKGKIYGPFVRGSSKFLTVGLLRKLFKIRICDKLPKKPC
                     LEYFIKNCDAPCINNLARTEYMRNVIALQRILEGKSSIDNFINEMEYKMKQASDLQQY
                     EKAMEIRDTLHRLNNLRVKQKMEKAVNGNSDEEYIGIVKEEQKGIANIMTLRRTRGVI
                     SDRKRFEFELVGDNSLSTFISQYYSTVPVIPRFIYVNEEPESKQSLEELLERLAEHKV
                     SIIQISSQFPMKEKRQLMELILRNINLYAGNNYDPSIVELKKILQLPTIPYVIDCFDI
                     SNFGTTFAVGSCTRFINGHPNKAGYRKFRIKTKLFTQNDFAMIEEIVTRRYSHYDEKI
                     NSKYQMPDLIVIDGGKGQLHSAINGLHKLVIDIPCISLAKENEEIYTPYSSEPIILPR
                     NSPALKMLQHIRNEAHRFGLAYNINLRKFSSSN"
     gene            complement(3956..4348)
                     /locus_tag="VHF08_06400"
     CDS             complement(3956..4348)
                     /locus_tag="VHF08_06400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068315.1"
                     /translation="MARVSQSDIGVILNKLVEEKAEEWKEEQQDNTDSVKNQNQEQQP
                     HLSLSAQACIFFKVVFFTHLFVSFFLSSYVIPDLIDYNRLIQLISKEIVNEKRKLEKL
                     LLLFFFLFLYAVIIEYGYSSDSLYLSNY"
     gene            complement(5318..6334)
                     /locus_tag="VHF08_06405"
     CDS             complement(5318..6334)
                     /locus_tag="VHF08_06405"
                     /inference="COORDINATES: protein motif:HMM:NF013088.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_function: GO:0005215 - transporter activity [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEX2068316.1"
                     /translation="MPLLIHKSWVVFIYAITLSLESILIEYLTTTSLQIPPIMLSAIS
                     ITLAGIMLSLIAVFFMKKKGISTLFSKSWKNLILASFLLAIGIFTWYDSISRIGASKE
                     ALIAGPLEIVIIVVLARIFLNENLDRIQVIGIVLALIGFLMAIASDAGDVLDDDSIGT
                     VITSPSALITFGDIEAIFSALGFAIGVLFLTKLVSIHSSIEVAGASMLVSGLILVAFM
                     IGFLHEYQEILSSSWGSSFQQQPLIITIIILLLFSFLPFIGSLCYTTGLSKIGASITA
                     TIGSSTILITILIQIILKELGITSNLPEDIFLAILGGVLGFLGIYVIHMHTHYLSIIL
                     RRKQ"
     gene            complement(6655..7386)
                     /locus_tag="VHF08_06410"
     CDS             complement(6655..7386)
                     /locus_tag="VHF08_06410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEX2068317.1"
                     /translation="MQVVNIENVSYRFNSTLVLENISFTVDKGDFVGIIGPNGAGKTT
                     LFRSMLGLLEDYQGRITFFGEDIRKNRNILQKIGYIPQKNSTDQGFPATVEEIVSLGI
                     TSRRPSKNKINHAIETVGLFDQKTKRIGELSGGQQQRVLIAKALANEPELLILDEPVT
                     GIDLKTQNKFYVLLKKLNEENKITIIWASHDLDAVKKLANKIACVNRRIFFHGDATIF
                     FENNELLKAYSESTMQAHMQLHDHS"
BASE COUNT         2697 a         1279 c         1375 g         2418 t
ORIGIN      
        1 atatcccaga ctagacagac aaaaaaaaca tactattgaa gtcatcgttg acagattaaa
       61 ggtcatgact gaggaaaaaa gcagattatt tgaatctgtc caatccgccc ttaagatagg
      121 aaatggtatt gtgattgcct cgatagatag tgaagataca ttatactcac aacgcaacgc
      181 atgcccgtat tgtggtatca gtctaggcga tttagaaccc cgctcatttt catttaattc
      241 cccttttggt gcatgcagag actgcaacgg gcttgggata aaaattgaat tcgatcctga
      301 actaattatt ccagacaagt caaaaagcat attggatgga gctgtgaaac cttggtctgg
      361 ctactttgct acattccgat ctgaaatgct gagagatgta ggcaaacatt ttggatttaa
      421 tctttataca cctatctcaa agatgacaga agaccagatc agagtcattt tatatggaac
      481 agatgataag attcattata aatacgaagg aaaatattca tctagcagat gggaatttag
      541 aggatccttt gaaggcgtaa ttccaaactt ggagcgctta tataagcaaa ctgaatcaga
      601 gtcaaagcgt gacgagatca tgcagttcat gcgtgagcgt acctgcgata gttgtctagg
      661 taggagattg cgtagagaag cactttcagt caagatacag gaaaagtcta taatggacat
      721 atgcgatctc tccattgata actgttatcg attttttaga accatacaac tttcagaaac
      781 agaaagatat attgcaagaa caatactaaa agagattatt tcaaggcttg aattcttgaa
      841 taatgttgga ttaaactatt tgtccttgaa tagggttaca gccacactgt ccggtgggga
      901 atcacagaga atcagactag caacccaggt tggttcgaac ttaactggcg ttttatatgt
      961 ccttgatgaa cctactatag gtctgcatca gagagacaat gctaaattga ttgatacatt
     1021 aaaaaaatta cgtgatcttg acaatacgct gcttgtagtt gaacacgatg aagaagtaat
     1081 ccgtaatgct gactggatca ttgatattgg gcctggtgct ggcatgcgcg gcggagaaat
     1141 tattgcctat ggtgtattag aaaatattct agataataag aattctgtta caggagcctt
     1201 cctcagaggt gacctacttg tatcctatcc taagcaagag agaaaaatac cagaacggtg
     1261 gctaactatt tacggagcgc aggaaaataa tctgaaatca attgatgtaa aatttcctat
     1321 tggttgcatg acagtcgtaa caggagtttc tggctctggc aaatcaacat tagtaaatga
     1381 tatattattt aaagtgctcg cggctcattt ttacaacact aaagaaaaac ctggtaaaca
     1441 cagaaatatt tctggcttag aatatgtaga taaagtcata ggaatcgatc aatcaccaat
     1501 tggtcgtact ccaagatcaa atgcagctac ttatgttaac gcttttacgc caatcagaga
     1561 gctctttgca aagacttcac aagcaaaaga aatgggatat aaatctggaa gattttcatt
     1621 taatgtttca catggaagat gcgaagcatg tcaaggtggt ggcgtcagaa aaatcgaaat
     1681 gcaatttcta cctgatgtct atgttacatg tgatgaatgc aaaggaaaac ggtataattc
     1741 tgaaacgctt tctgtaaagt acaaggaaaa gacaatttca gacatattga atatgacagt
     1801 cgacgaagca tcagaattct ttgaaaatat ctcaattatt gaaaagaagc tccgaactct
     1861 gaaggatgta ggacttggat acatacgact tggccaacct gctactacat tgtctggcgg
     1921 tgaagcacag agaattaaac ttgctgcgga gctctcaaaa agagataccg gtaaaacggt
     1981 atacattcta gatgagccaa caacagggct tcattttgca gatgttagca aattgttgca
     2041 tgttttaaaa agactacaag atcttggcaa tactataata gttattgaac ataatctaga
     2101 tgtcatcata agcgctgatt ggattataga tcttggcccc gaaggcggag aaggtggtgg
     2161 caagatagtt gctacgggac cacctcatga agttgcagaa aataaagaaa gccatactgg
     2221 aaaatatcta aaatacaagt tagcaattga tcaaatcatt cagaggggtg catcataatc
     2281 acatcatcac caccatcacc acctcctaca ccagacatct cttctatcac agaaaagcaa
     2341 atccctcagg atcctggtgt gtatttgatg aaaaataaag aagggaaaat aatttacatt
     2401 ggaaaagcaa aaaatatacg taagcgactt aaatcttatt ttttactttc aaagaataac
     2461 aatactaata acaacaactg gaaaacctcc cgtctaataa gtaatgttgc agatattgaa
     2521 tttgtattaa ctgataacga gatcgaagca ttcttgctgg aatctaattt gattaaaagg
     2581 tttagaccgc tatttaatat tgaactaaag gatcaacagc gttatacata tctgaaaatc
     2641 acggatgaag tttttccccg gctgcttgtg gcaagacgta atagaaatgg agaatttcat
     2701 ggaccaaagg gcaaaatata tggtcctttc gtaagaggca gttcaaagtt tcttactgta
     2761 gggcttttaa gaaaattatt caagattaga atctgtgaca aactgccgaa gaaaccatgt
     2821 ttagaatatt tcattaagaa ttgtgacgca ccttgtatta ataatctggc tagaacagaa
     2881 tatatgagaa atgttattgc attacagaga atattagaag gaaaaagcag tattgataat
     2941 tttataaacg aaatggaata taagatgaag caggcatcag atcttcaaca gtatgaaaag
     3001 gcaatggaaa ttcgtgatac actgcataga ttgaacaatt tacgtgtaaa acagaaaatg
     3061 gaaaaagctg taaatggcaa ttctgacgaa gaatatattg gaatagtgaa ggaggagcaa
     3121 aaaggtattg caaatataat gactttacgg agaactcgcg gcgttatcag tgatcggaaa
     3181 cgatttgaat ttgaattggt tggagacaat tctctttcta ccttcatatc acagtattat
     3241 tcaacagtcc cagtaattcc tagatttata tatgtaaacg aagaacccga gtcaaagcaa
     3301 tctttagaag aattattgga aagactcgct gagcataagg tgagtattat tcagatttcc
     3361 tctcaattcc cgatgaaaga aaaaaggcag ttaatggaac taattctacg caatattaat
     3421 ctttacgctg gaaataacta tgatccttct atagtagaac taaagaaaat tcttcaatta
     3481 ccgactatac cctatgtaat agattgcttt gatatctcaa atttcggaac tacatttgct
     3541 gttggatcct gtactaggtt cattaatggt catccaaata aagccggtta tagaaaattc
     3601 agaattaaga caaagctatt tacccaaaac gactttgcaa tgattgaaga aattgtaacg
     3661 cgtagatact cgcattatga cgaaaagatt aatagcaaat atcaaatgcc agacttgata
     3721 gtaattgatg gaggaaaagg acagttacat tctgcgatta atggtcttca taaattagta
     3781 atagatattc cttgtatatc ccttgcaaaa gaaaatgaag aaatctatac cccttattca
     3841 tctgaaccca taattcttcc aaggaatagc cctgcactca agatgcttca gcacattaga
     3901 aatgaagctc acagatttgg cttagcatat aatattaacc taagaaaatt tagttctagt
     3961 aattagatag atagagagag tcagaagaat aaccatattc tattataacc gcatagagaa
     4021 agagaaagaa aaacaataac aacagttttt ctaatttcct tttttcatta acaatttctt
     4081 ttgatatgag ctgaatcaat ctattgtagt ctattagatc tggaatgacg taacttgaaa
     4141 gaaagaaaga aacaaagaga tgagtaaaga agaccacttt aaagaaaatg catgcttgag
     4201 cagatagaga tagatgtggt tgttgttctt gattttggtt cttcacagaa tcagtattat
     4261 cttgttgctc ttctttccat tcttctgcct tctcttcaac taacttattc aaaataactc
     4321 ctatatcact ttgagatact cttgccacct tagatatttc gcgataagtt ttgccttatt
     4381 atagtaaagg tctataacaa gtctctctct ctgttaatat cgtcataatt tgtatcttca
     4441 gaaggggata acgaaagctt aaagctgttg ttgttatcat ttgataccag ttttgttacc
     4501 tctgatatca tctgtttcca tctgttacca atacacagta tttgaattca gtgtatctgt
     4561 aataatcatg tcatatatat actaaatatt gatgtagaat aatgtgtgga aacactgagt
     4621 atatgattta gtagatgtca taaaatgata attggattat ctatagatcc gactgatgag
     4681 cacattataa taagtcctct ggtgtggata ataaaaccta caaggatact catagtctat
     4741 atgtttaacc cgctccttat cacttgaata acattgacta aagcaattga attttcttgt
     4801 attgttattg ttctcggtag tgtggcaatg gagttgatgg taataattga tcaatcgatg
     4861 atgctatagt tgaaggtata gaacggagcc gatgctcgtt atcttggtca tcttcataat
     4921 attaaactct ttgttttctc tagatcgaat aattcttgat aaattgtgct tgtattctac
     4981 agctttcaca ttatcaacag aaatttcacg taatttatta gcaatttctg tatttttaag
     5041 gcaatagtcg gatgcgttct ctttaaaagt tattctcttg ttctgctttg gagctgtata
     5101 gagctggtta atacttcatt acttccaaat atagaaatat tacaatatgc tgaaataata
     5161 ttggtttaat atagtagaaa ataacggaag aacaggatta aacacattgc ctgaaagcat
     5221 tgcatcagct attaaaacgt atgcacattg ctctgtaatg atagtaaaaa gatgaagtat
     5281 attcatgatc aagtctaata cggataggta agatcgctta ttgttttctc cttagaataa
     5341 ttgatagata atgggtatgc atgtgaatta catatattcc gagaaatcct aaaacacctc
     5401 ccagaatagc aagaaatata tcttcaggta aattactcgt gattcctaat tctttcagta
     5461 ttatttgtat taagatagta ataagaatag tagaagaccc tatggttgct gtaatagatg
     5521 ctcctatttt gctcaagcca gtagtataac atagtgatcc aataaaagga agaaatgaaa
     5581 agaggagtaa tattataata gtaattatca atggctgttg ctgaaatgaa gacccccagg
     5641 atgatgatag tatttcttga tattcatgca aaaacccaat cataaaagca accaaaatta
     5701 atccagagac tagcatggag gctcctgcca cttctataga tgaatgtatt gaaacaagtt
     5761 tggttaaaaa gagaacgcca attgcaaatc caagggctga aaaaattgct tctatatcac
     5821 caaaggtaat taatgctgac ggcgatgtta ttactgtccc tatactatcg tcatcaagaa
     5881 catctcctgc atcacttgct atcgccatta agaatccaat taatgccaga acaataccaa
     5941 taacctgaat tctatctaaa ttctcattca agaaaattcg tgctaaaaca actataatca
     6001 caatttcaag aggacccgca ataagggctt cttttgaggc gccaattcgg ctaatagaat
     6061 cataccatgt aaatatccca attgctagca agaaactagc caaaatgaga tttttccatg
     6121 attttgagaa tagcgtagat attcctttct ttttcataaa aaaaaccgca ataagtgaca
     6181 gcataatgcc agccaaggtt atgcttatgg ctgaaagcat aatgggagga atttgcagag
     6241 aagtggtagt taaatattca atgagaattg actctaaaga tagagttatt gcataaataa
     6301 aaacgaccca cgatttatgt attagcaatg gcaaatagta ataacagcta agaaaccact
     6361 acatataata tgaagattca atcttggacc agagcagggc ctgtctgcac caatacataa
     6421 aatgcccaat ttttcaatga tgtgcctata tttaataaca tagtcatctt acacagaaag
     6481 aaacacgtat gtaagtagta gtgatgtaat ttaaaatact ctattgtcca atccgtcact
     6541 aaatggtaaa gccttttaat aaaattattt atataacaaa ttatagagaa gacaagcgtt
     6601 gccataaatg cttgtgatta aaatcaattc aataattttc atattatttt tgtattaact
     6661 atgatcgtgc aactgcatgt gtgcttgcat tgttgattca gaataagctt ttaacaattc
     6721 attgttttca aaaaagatag tagcatcgcc atggaaaaat atgcgtctgt taacacatgc
     6781 aatcttattt gcaagttttt ttactgcgtc tagatcatgg gaggcccata ttatcgtgat
     6841 cttattctct tcatttaatt tctttagcaa aacataaaat ttgttctgtg ttttcagatc
     6901 aatccctgta actggttcgt caagtattaa caattctggt tcatttgcta gagcttttgc
     6961 aatgagaaca cgttgttgct gtccaccgga taattcaccg attcttttgg ttttctgatc
     7021 aaataatcct actgtttcga tagcatgatt tattttgttt ttagatggtc ttctactagt
     7081 tattcctaat gaaacaattt cttcaactgt tgcagggaag ccttgatctg ttgaattttt
     7141 ctgtggaata taacctatct tttgaagtat gtttctattt ttacgaatat cttcaccaaa
     7201 gaatgtaatt ctgccttgat agtcttccaa taatccaagc attgaacgaa atagagtagt
     7261 tttgccggca ccattaggac caattattcc tacaaaatcg cctttgtcta ctgtaaatga
     7321 aatgttttca agaacaaggg tcgaattaaa tctataagat acattttcaa tatttactac
     7381 ttgcaatcca tctccacctt taggatagca acattatgat ccattctttt tatataacca
     7441 ataccttttt ttccatggtg cattctctct atagaattta aaaaaagtac ctggctatta
     7501 gcagtctctt caatacaatt agtcaagtta gaatgaatta acttatcata ataataaata
     7561 atattgattt tcaattgatc tatcagtttg attaattaca atctttttat taatgtatct
     7621 tctaatccaa atccgagtaa attgtgttaa tgtactattt tttataaggg gctgaataaa
     7681 ttatggaata agtctggctt ccacaatatg aaaatttcat tttaatatac ttattaagaa
     7741 tattacctaa tcacataatt atctgtctt
//
LOCUS       DATAAS010000394         1728 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3648074, whole genome shotgun sequence.
ACCESSION   DATAAS010000394 DATAAS010000000
VERSION     DATAAS010000394.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1728)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1728)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1728
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3648074"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(3..587)
                     /locus_tag="VHF08_06415"
     CDS             complement(3..587)
                     /locus_tag="VHF08_06415"
                     /inference="COORDINATES: protein motif:HMM:NF013122.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease domain-containing protein"
                     /protein_id="HEX2068318.1"
                     /translation="MDNKKPIYQSKSAIYISVDIECSGPIPIDYSMLSLGACVVGKEE
                     DDDKKNSTFYIEIQPISDNYIKEALEVCGFSLQELKAKGMPPQQAMKYFADWIAKVSV
                     ARKPVFISHPVAFDWSFVNYYFYKFIGWNPFGVSGIDIKSVWIGKTNAKWHAIGIDDI
                     KKSLGLEHIIHTHNALEDAKEQSIIFKEMMIELG"
     gene            complement(936..1364)
                     /locus_tag="VHF08_06420"
     CDS             complement(936..1364)
                     /locus_tag="VHF08_06420"
                     /inference="COORDINATES: protein motif:HMM:NF024865.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEX2068319.1"
                     /translation="MKKEENDTTIGEVQNINNQFYYAFENLSIEMMERLWKHVDNAVC
                     IHPGWNLFSGWLAICESWITIFRNTDMIRFVITNTKVRVFDNIAVVVCLENIETSVNG
                     QVIKLGVLATNIFEHDENQWLLIHHHGSYVSDYIPPNISS"
BASE COUNT          553 a          311 c          226 g          638 t
ORIGIN      
        1 tattatccta actcaatcat catttcctta aaaattattg attgttcttt tgcatcttct
       61 aatgcattat gagtatgtat tatatgctca aggccaagac tcttcttgat atcatctatt
      121 cctattgcat gccacttagc attagtcttt ccaatccata ctgattttat atcaattcca
      181 gatactccaa aaggattcca tccaataaat ttgtagaaat aatagttaac gaatgaccaa
      241 tcaaaagcca caggatgtga tataaataca ggttttcttg caactgacac ctttgcaatc
      301 cagtcagcaa aatatttcat agcctgttgt ggcggcatac ctttggcttt aagttcttgt
      361 aaagaaaatc cacatacttc taatgcttct ttgatataat tatctgatat aggttgtatt
      421 tcaatataaa atgtggaatt cttcttatca tcatcttcct cttttcctac tacacatgca
      481 cctaaactga gcatactata atctattgga atagggccag agcattctat atctactgaa
      541 atatatattg ctgattttga ttgatagata ggcttcttat tgtccaataa aattaatata
      601 aatctgatat tagtttagag ttttcttcaa ttcttctcct ctatctattg gttaactata
      661 atcaaagtta gggtagatag atattaatat tttattaatt ttcttatttg actcttgata
      721 cccctcgcct gtaattgctc gtctgcatat ttggtaattt tagcaattat gtcagaaata
      781 catagtttat atacaatatc tcaacaaggt gacatatttt gtccttcttc aattttgaaa
      841 tatgcaagcc tagttcaaat tatgcaaatt cttatttgtg aaaattctct ttatgcattt
      901 tgtaacatag atatcaggaa tatcctcttc caacattaag aagatatgtt aggtggaatg
      961 taatctgata cgtacgagcc atgatgatgg ataagcaacc attggttttc atcatgttca
     1021 aatatgttag tggcaagaac accaagctta ataacttgtc cattaactga agtttctatg
     1081 ttttctaagc atacaactac tgctatatta tcaaagaccc tcaccttagt gtttgtgatc
     1141 acaaatctaa tcatgtccgt attgcggaat atagttatcc agctttcaca tattgccagc
     1201 caaccactaa ataaattcca acctgggtgt atgcaaactg cgttgtcaac atgcttccat
     1261 aacctttcca tcatctcaat tgacagattc tcaaaagcat aatagaactg gttgttaata
     1321 ttctgcactt ctcctatagt cgtatcattt tcttcttttt tcatttttat tatatacaca
     1381 tttagactat taatggctag atcctagccc ctttctaacc atagaatctt tctataatct
     1441 ttagaaatgt tatattgaca gatctatatt taacaataat cattattcac ataacaaatg
     1501 atgaagacag taataatata tgaaataact ttctatttta tacattttaa ttggattttg
     1561 ctgctaacgt tcagactatc ttgttagata acagcttatc aatatgtctt gaaaggacat
     1621 atgagacaaa tatcgtaaat tcctattcag tatcctaagc acttattgac agaaaaatca
     1681 tacattctct tgaagcaagt agatttggaa aaatagattt gttccact
//
LOCUS       DATAAS010000395         2579 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3107893, whole genome shotgun sequence.
ACCESSION   DATAAS010000395 DATAAS010000000
VERSION     DATAAS010000395.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2579)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2579)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2579
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3107893"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..359
                     /locus_tag="VHF08_06425"
     CDS             <1..359
                     /locus_tag="VHF08_06425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068320.1"
                     /translation="AGIAGVVVGSLSISQIIGLGFVIIGAIILAVGIGYLVVSYGLLK
                     GKRWSWTITVILLFIGIAIDVASIIIFGYFTFNTDTSTFLTSNSGSIAGIIISVIILY
                     YLYRPHIKSYFGKIST"
     gene            complement(729..947)
                     /locus_tag="VHF08_06430"
     CDS             complement(729..947)
                     /locus_tag="VHF08_06430"
                     /inference="COORDINATES: protein motif:HMM:NF025280.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C2H2-type zinc finger protein"
                     /protein_id="HEX2068321.1"
                     /translation="MANSNQTFSCETCNSTFNSRDELRQHSIKEHEDKITTVGNTEPT
                     FRCETCNAVFNSREELRQHSIKEYEDKR"
     gene            complement(1281..2153)
                     /locus_tag="VHF08_06435"
     CDS             complement(1281..2153)
                     /locus_tag="VHF08_06435"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2068322.1"
                     /translation="MDNKELERKVAVVTGSSTGIGYETSLLLSRNGFYTYATMRNLYK
                     SKRLNDIASKDNLPLKVLELDVTDDKSVKNAINQIKEEKKRIDVLVNNAGYDVFGAVE
                     DLSTDEFKAQYETNVFGIIRVTKEVIPIMRNQRSGTIVNISSAGGRVGIPLNAAYVSS
                     KFAVEGLSETMRYELQEYGINVIIIEPGVIKSNFFENSKAAYNATNTESPYSQLMQKV
                     SDGFKPMLESGSSSPSKVADVILNAIMSNDPQVRYLVGDDAVSLIEKRNKMSDKEFES
                     WMKESLLQQKGFIR"
BASE COUNT          792 a          423 c          373 g          991 t
ORIGIN      
        1 tggctggaat tgcaggagtt gtagtcggat ctttatctat atcgcaaatc attggcttag
       61 gttttgttat aattggtgct atcatattag cagtaggaat tggatatctt gttgtgtctt
      121 atggattgtt aaagggaaaa agatggtcat ggactataac tgtgatattg ctattcattg
      181 gaatagctat cgatgtagct tctattatta tttttggata ttttactttt aacacggata
      241 catctacttt tcttacttct aacagtggta gtattgcagg cataattatc agtgtcataa
      301 tattgtatta tctgtataga cctcatatca agtcatactt tggtaaaata tctacgtgat
      361 caatttttgg cctgttacct agaagacacc aaatatgaaa ggatccgaat gaatgttggc
      421 agactttaac aaattgaaag aaataagtta aactcctttg ccacaaggga tataatcctg
      481 cctagtccat gaccttaaag ttacaaaaaa acgcaatgtt agaaaattaa acaaaaaaga
      541 tgatgtattt tattctcaat ctgatatact tgttgtttac tttcgcaaat acttatcatt
      601 ggcagcaagc ttcaatttcg acacccagtt ctagccaatt attgcttaat tactctcata
      661 attggttctg aagtttctgt ttgattattt actcttttct ctctctagct atagcgaggc
      721 gatattagtt atcttttatc ttcatattcc ttaatactat gctgccttag ctcttcacgt
      781 gaattaaaca ccgcgttaca tgtttcgcat ctaaaagttg gttcagtatt accgacagta
      841 gtaattttat cttcatgttc ttttatgcta tgctgtctta attcatcacg cgaattgaat
      901 gttgagttgc atgtctcaca actaaatgtc tgattactgt tagccattga gtttggtata
      961 ctatatggta atcatttgct ttaacagttg gcgtattctg gatggcaaat ttgagtcaaa
     1021 tctgtccaac aatctacatc attgttgtct atttaattag accaatatat cctatatttc
     1081 actgagcatg aatctgtcag taaaagaaaa tctatcctat aattcatatt ttcaaattga
     1141 ttttataatc aacaaatatg catataagtt ggtaagaact aaatggttat caccttacta
     1201 tcatgcaatt aaagaataaa ttataaataa tacaaaaagg ttttaatttg tagtttctca
     1261 gctgtaataa catatatcta ttatctgatg aagccttttt gctgtaatag actttctttc
     1321 atccagcttt caaattcttt atctgacatt ttatttcttt tttcaattag cgaaacagca
     1381 tcatctccaa ccaaatatct tacttgtgga tcatttgaca ttattgcatt caaaattaca
     1441 tctgctacct tagatggtga cgatgagcca ctttcaagca ttggcttaaa accatcagaa
     1501 accttttgca ttaattgtga atatggcgat tctgtgtttg ttgcattata tgcagccttt
     1561 gaattttcaa agaaattact ctttattacg cctggttcta ttattattac atttatacca
     1621 tattcttgta gttcatatct cattgtttca gatagtcctt ctacagcaaa tttactgcta
     1681 acataagctg catttagtgg tatacctact cgcccaccag cagaacttat attcactatt
     1741 gtaccacttc tttgatttct cattatcggt attacttcct ttgtaactct aataattcca
     1801 aagacatttg tttcatattg tgctttaaat tcatcagttg ataaatcttc tacagctcca
     1861 aatacatcat atccagcatt atttactaaa acatcaattc gttttttctc ctctttgatt
     1921 tgattgattg cattcttaac cgatttgtca tctgttacat ccaactctag tacttttaat
     1981 ggtaaattat cttttgaagc aatatcattt agtctctttg atttatataa attcctcata
     2041 gttgcatagg tgtaaaagcc atttcttgaa agcaataaag aggtttcata tcctatcccc
     2101 gtagagctac ctgtaacaac tgcaactttt ctttctaact ctttgttatc catatgagag
     2161 caatatttct taaactatta aagttagata gtttataaat tatataaatt attttttacg
     2221 ttatggtggc tatgttaata taagttctat atcttaatct cttttcttca tctaattgac
     2281 aattaagaaa agagagaaaa tacatcaaag atattgctta tggtttatac atgtacttcg
     2341 ttggtctttc ttttagaaat actgtaaaag cattatcgtc taggtttaga aaaagaagtc
     2401 atctttatat ggaatagtac agaaatatga agcacaaaag attaattaaa agggaaggaa
     2461 aaagtatcta aattcatagt agttgaattt gcttatatcg tcaattaatt tgtttggatt
     2521 tgggttgcat ttaattcaat tgatgaactg attcttggca tacatacata tttcctttg
//
LOCUS       DATAAS010000396         1606 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3649051, whole genome shotgun sequence.
ACCESSION   DATAAS010000396 DATAAS010000000
VERSION     DATAAS010000396.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1606)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1606)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1606
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3649051"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1606)
                     /locus_tag="VHF08_06440"
     CDS             complement(<1..>1606)
                     /locus_tag="VHF08_06440"
                     /inference="COORDINATES: protein motif:HMM:NF012544.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEX2068323.1"
                     /translation="IIVQTGEEIKNPKKNIPRAIFISLTLVVLLYCLVAFVSIGAIFP
                     QNIGDIPAWKFIGQNGDLGISKAAELFLPYGFFIILAGGIVSSLAALNATTYSSARVA
                     FAMGRHYNLPYQLSEIHHKFKTPYVATIISGILMAVVAYALPLDQIALAAGVIFLLLF
                     TQVNISVITIRNMYGDKLHYGFRTPFFPFVPIIGVIVKLGLAIYLLITEPFSWVISVL
                     WIAIGFAVYRIYSFRKEIDHYAPIITREGDLTRKDFRILIPYTPENPDRLIKYAIRVA
                     KENDGEINILRVITVPHQTPLSAGIAFTESAARAFAPLEKIIDKENILNHYFVRISHD
                     ATEAILSTIEEQRIDLLITDYETLRRNKALQTLLTCNILAVLTGGGSDEELVLEEFIA
                     KEEKREEANPVSERNRKNMVVLYDGGDHSDMVLKTASWLEHSGRFKVFVLSIKKKEER
                     EHIGYSKIDNEDIKNKKELEKEQHVQYLEQIGVEFHEVFVSEKTQNNSENFAKLILSS
                     VNASQPDLVIMGKRVGKFNVFDNQNFI"
BASE COUNT          504 a          316 c          242 g          544 t
ORIGIN      
        1 gataaaattt tgattatcaa atacattaaa tttaccaact cttttaccca ttattactag
       61 atctggctga gaagcattaa ctgaagataa aatcaacttt gcaaagtttt cactattgtt
      121 ttgtgtcttt tctgatacaa aaacttcgtg gaactccaca ccaatctgct ccaaatactg
      181 cacatgctgc tctttttcca gttctttttt attctttata tcttcgttat caattttgct
      241 gtagcctata tgttctcgtt cttctttctt ctttatagat aatacaaata ccttgaatct
      301 tccagaatgc tctagccaac tagctgtctt caataccata tctgaatgat ctcctccatc
      361 gtatagaaca accatgttct tcctatttct ttcagataca ggatttgctt cttctctttt
      421 ttcttctttt gcaataaatt cctcaagtac gagttcttca tcactacctc cacctgtcaa
      481 aacagcaagt atattgcatg ttaaaagcgt ctgtaatgcc ttgtttctcc ttaacgtttc
      541 ataatctgta atcaaaagat cgatgcgctg ctcctcaatt gttgataata tagcctcggt
      601 tgcatcatgg gaaatcctta caaagtaatg atttagtatg ttttctttat ctattatttt
      661 ttctaatggt gcaaaagctc tcgctgcaga ctctgtaaat gcgattcctg cagaaagtgg
      721 tgtttgatgt ggcactgtaa taactcttaa tatgttaatt tctccatcat tttcctttgc
      781 aaccctaatc gcatacttta ttaatctatc aggattctcc ggagtataag gaattaaaat
      841 cctgaaatct tttcttgtca gatcgccttc tctggtgata attggcgcat aatgatcaat
      901 ttcttttctg aaagaataaa ttctatatac agcaaaacct attgcaatcc ataatacgct
      961 aataacccaa ctgaagggtt cagtaattag aagataaatg gcaagtccta acttcacaat
     1021 gacacctatg ataggtacaa agggaaagaa tggagtccta aatccataat gaagcttatc
     1081 tccatacata tttcttatag taatgacaga aatgtttact tgtgtaaata agagcaagaa
     1141 tatgacacca gcggcaagtg caatttggtc tagtggtaat gcataagcca caacagccat
     1201 taatataccc gatattattg tagcaacgta tggagttttg aatttatgat gaatttcgct
     1261 taattgatat ggtagattat aatgtctacc catagcaaat gcgactctgg ctgatgagta
     1321 agtagtagca ttcaacgcag ctaaactgga aactatacca ccagcaagaa tgataaaaaa
     1381 gccatagggt aaaaataact cagcagcttt acttatccct aaatcaccat tttgacctat
     1441 gaatttccat gcaggaatat caccaatatt ttgaggaaaa attgcaccga tggagacaaa
     1501 tgctacaaga caatacaata aaacaacaag agtcaacgaa atgaagattg ctcttggtat
     1561 attcttcttt ggattcttta tttcctcgcc ggtctgaact ataatt
//
LOCUS       DATAAS010000397         2355 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3649341, whole genome shotgun sequence.
ACCESSION   DATAAS010000397 DATAAS010000000
VERSION     DATAAS010000397.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3649341"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(204..1775)
                     /locus_tag="VHF08_06445"
     CDS             complement(204..1775)
                     /locus_tag="VHF08_06445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase family protein"
                     /protein_id="HEX2068324.1"
                     /translation="MIFENEQTLHKFMVSKGEEAFHDRYEEAIENIKSEFGKRYTMII
                     DDKNVKSLESFVHTSPIDTRIVLAYFPSGTAKHTENAIKAAKDAFESWGKTDYNKRIE
                     LCRNAADIMVRRKFELAAWISYENGKNRYEAIGDIDEAIDFIRYYSEQMEKNNGFIVQ
                     TKSAYPNEKSKSVMKPYGVWGVISPFNFPAAILVGMSIGALITGNTIVLKPSSDAPII
                     GYKFAEIMKEAGLPPGVLNFITGSGSKIGKTIVDSEDVAGIVFTGSREIGYKITKEFS
                     KMKPRLVIAELGGKNPVIVTENADLDKAIEGILKAAFGYSGQKCSACSRVYVQKSIKD
                     KFVERLVERTKNISIGNPLESNIFIGPLINSNAYKNYQKYTELAFRDGTVLIGGSTKK
                     DGDFKYGYYVEPTIVDSLPKNHILFREELFMPILCVADYELFDEALGLCNQSDYGLTA
                     GIYSNKKQEVERFLDNIEAGVVYVNRDISATTGAIVGSQPFGGWKHSGTTGKGAGGPY
                     YLIQFMREQSQTCVE"
     gene            2047..>2355
                     /locus_tag="VHF08_06450"
     CDS             2047..>2355
                     /locus_tag="VHF08_06450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068325.1"
                     /translation="MSKDGYAGILHSQNYTLLERLLFRIAKKWIPGHTYKDAMSAAKE
                     TNNKGMSAILNFLGEDSIDATQIEQTVNEYCLLLSLLKSNGIDGCISVKPTQIGLRIS
                     Y"
BASE COUNT          752 a          447 c          351 g          805 t
ORIGIN      
        1 aattatagaa tgatactttt tctagataga ccgtctaaag agttattata tcaaataaaa
       61 ataaaaataa aaaagagttt attaaatatt tgactcaaat tatcaaagtg ctaaatgaca
      121 taagcaactt catctggtat attcctgaac atcttaatct atatgaagaa atctgttttt
      181 cgacgtagat tctaaatctc tattcactca acacaagtct ggctttgctc ccgcataaat
      241 tgtatcaaat aatatggtcc accagctcct ttgcctgtcg taccagaatg tttccaacca
      301 ccaaatggct gggaccctac aatagctcca gttgtagcac tgatatccct gttaacatat
      361 actacgccag cttcaatatt gtcaaggaac ctttctactt cttgtttttt attactatag
      421 attcctgctg tcagcccata atctgattga ttacaaagtc ctagggcttc gtcaaacagc
      481 tcataatctg ctacacacaa aattggcata aacaattctt ctctgaataa tatgtgattt
      541 ttaggtaaac tatccacaat ggttggttcg acatagtatc catacttgaa atcaccatcc
      601 tttttagtag agccacctat caatacagtg ccgtctctaa acgcaagttc agtatatttt
      661 tgataatttt tgtaagcatt tgaattaatc agaggaccta taaaaatatt agattcaagt
      721 ggatttccaa tagagatatt ttttgtcctc tctacaagtc tttcaacaaa tttgtccttt
      781 atactttttt gcacatagac acgcgagcag gcactacatt tttgtcctga ataaccaaaa
      841 gctgctttaa gaattccctc aattgcttta tcaagatctg cattttctgt aactattaca
      901 ggatttttac ctccaagttc tgcaattact agacgtggtt tcattttact aaattctttt
      961 gttattttat atcctatttc tcgtgagcca gtaaatacaa ttcctgcaac atcttcgcta
     1021 tcaactattg tcttaccgat tttacttcca gaacctgtta taaagttcaa aactcccgga
     1081 ggtaatcctg cctctttcat aatttcggca aacttatagc cgattatagg agcatcgcta
     1141 gaaggtttta agactattgt atttccagta atcaaagctc caatactcat tccaactaaa
     1201 attgcagcag gaaaattaaa cggagagatt actccccaaa ctccatatgg tttcattaca
     1261 ctcttgcttt tttcatttgg atatgcactt ttagtttgga ctataaatcc gttattcttt
     1321 tccatctgtt cagaatagta tctgataaaa tcaatggctt catcaatatc tcctattgct
     1381 tcatatctat ttttgccatt ttcataagaa atccatgctg ccagctcaaa cttacgtcta
     1441 accataatat cagcagcatt tctgcaaagt tctatgcgtt tgttataatc agttttaccc
     1501 cagctttcaa atgcatcttt agcagcctta attgcattct ccgtatgttt agctgtgcca
     1561 cttggaaaat atgcaagtac aattcttgta tctataggtg aagtatgaac gaaactttcc
     1621 aatgatttaa catttttatc atcgatgatc attgtatatc ttttaccaaa ttcagatttg
     1681 atgttttcaa ttgcttcttc atatctgtca tgaaaagctt cctctccttt tgacaccata
     1741 aatttatgga gagtttgctc gttctcaaat atcataaaat aatattatct gaagagcctt
     1801 aaaagctatc agagtctgag taatttgttg ttgttgttgt cataagagag cgagaaactg
     1861 caaattatag ataacatgaa agtgtggttt ggatgataat tagtatatga aaagattagg
     1921 ttaaaagcta ttcctgtaag catctgttaa ttctagtcgc caaaaacgtt tggatattat
     1981 acaaaacaca gcttttctag aagtgttaat agataactta ctacaatata tatatgtacg
     2041 ttgattgtga gcaaagatgg gtatgcagga atattacatt cacagaacta tactctacta
     2101 gaaagactgt tatttaggat agctaaaaag tggatacctg gccataccta caaagatgca
     2161 atgtcagcag ccaaagaaac caacaataaa ggaatgtctg ctattcttaa tttccttggc
     2221 gaagacagta ttgatgccac acagattgag cagacagtaa atgaatattg tttattgctg
     2281 tctctcttaa aaagcaatgg aatagacggt tgtatatcag taaaaccaac acagatcggt
     2341 ctaagaatta gttac
//
LOCUS       DATAAS010000398         1933 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_417544, whole genome shotgun sequence.
ACCESSION   DATAAS010000398 DATAAS010000000
VERSION     DATAAS010000398.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1933)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1933)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1933
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_417544"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..217)
                     /locus_tag="VHF08_06455"
     CDS             complement(<1..217)
                     /locus_tag="VHF08_06455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068326.1"
                     /translation="MTKINQRRRYFQMLRELLRMKAIATFVIAVLALSMVGLSYNAFA
                     YHGQEVLLALDSAQFIPRLNTTEGSQVK"
     gene            complement(518..1294)
                     /gene="sufC"
                     /locus_tag="VHF08_06460"
     CDS             complement(518..1294)
                     /gene="sufC"
                     /locus_tag="VHF08_06460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEX2068327.1"
                     /translation="MAFLEIKDLHASIEGKEILTGLSLNIDKGEVHAIMGPNGSGKST
                     MANVLLGHPKYNVISGEVLVQGQGILDLATDERAKKGLFLGFQYPTEISGVGYSHFLR
                     NAYNTLSKSLREEQKNREVFLTVKEFHEYVKKNLDYVGLDPSFLGRYLNEGFSGGEKK
                     RSEVMQMLVLKPNIAILDEPDSGLDIDSVKSVAEAINKLIESGAGVVVITHYARILRY
                     LTKLDKVHVMAKGKIIKSGGRELSEELETKGYVWLGLEDK"
BASE COUNT          599 a          363 c          279 g          692 t
ORIGIN      
        1 ctttaacttg agatccctca gtagtattta accgaggtat gaattgcgcg ctatctaagg
       61 caagaagaac ttcctgtcca tgatatgcaa atgcattata tgataatcct accatcgata
      121 aagctagaac tgctattaca aaagttgcta ttgctttcat tcttaataat tctctgagca
      181 tttgaaaata ccttcttctt tggtttattt ttgtcatatg cttgatattc aatcgtaaaa
      241 taccatatat gaataataat gtttagtata aaagaaagaa atcgttcttc ttttatcttt
      301 tactgtatca tctctatttt tgctactgct atataataac agttgctatg tcgatgataa
      361 attagcaaat tctcatatta gagtacgtga acttttagtc tatacggatt aattctaaat
      421 cttttgttaa agtactcata tttattatct ctatttatta tgatctaaca cgtgaattaa
      481 gcaataatac atcaaagata attactggtc cagtccttta tttatcttct aagccgagcc
      541 aaacataacc tttcgtttcg agttcttctg ataattctct gccgcctgat ttgataattt
      601 ttccctttgc catgacatga accttatcaa gttttgtaag ataccttaaa attcttgcat
      661 agtgagtaat tacaacaaca cctgcacctg attcaattaa tttgttaata gcttctgcaa
      721 cagactttac cgaatcaata tccaatccag aatcaggttc atcgaggatt gcaatattcg
      781 gttttaggac aagcatctgc attacttctg atctcttttt ctctccacca gaaaatccct
      841 cgttaaggta cctaccaagg aacgatggat caagtccaac atagtctaaa ttcttcttta
      901 catattcatg aaactcctta acagtcaaga aaacttctct gttcttttgc tcttcacgta
      961 atgatttact caaagtgttg tacgcatttc ttagaaaatg gctgtagccg acacctgata
     1021 tctcggttgg atactgaaat ccaaggaaca accccttttt tgctctttca tcagttgcta
     1081 aatccagaat accttgtcct tgaacgagaa cttccccaga gatgacgtta tactttggat
     1141 gacccaaaag tacatttgcc attgtactct ttcccgatcc atttgggccc atgatcgcat
     1201 ggacttcgcc tttgtcaatg tttaaactaa gacctgtcag aatttctttt ccttcaatgc
     1261 tcgcatgtaa atccttaatc tctaaaaatg ccatctatca gctgattgct taacagataa
     1321 tataaatatt tctataaaat atatcttatt tataataatt acatgttatg tagagtatta
     1381 atctcatatt aataagatac attgctaaca ttcatgaaat ttcaaaataa gcgaataatg
     1441 taaataaata atcttaaaaa atataatatt ccaacgcgac ttatttagat gaccgaataa
     1501 taatatgtaa tctatacaat ctcgctcgca tatattttct atgctgatcg tattcaaagc
     1561 actctactag aataatttgt taggatatgt attctatatt agtatactta atacgtgcga
     1621 gttaaaaata tcattagtcc aaatgattat gcattggtaa tagttgctgc gggagtagat
     1681 cgtaactgga catcttcgat cgcctgctcc ttggacaaga gcattgtttt gagtatgaca
     1741 atatcattag ctttcatgtc gtgttatgat aaatatgcta ttattactat tgtactatta
     1801 gtttgcctgt cataaatgga tgtacagtac aatgatagtc gtattctcct gcttctatat
     1861 ctgctgtagc taattgagct gatgctgcct ggagtataat acttgtatca aacatctgac
     1921 ctgcattagg atc
//
LOCUS       DATAAS010000399         1539 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_419048, whole genome shotgun sequence.
ACCESSION   DATAAS010000399 DATAAS010000000
VERSION     DATAAS010000399.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1539)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1539)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1539
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_419048"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            255..1199
                     /locus_tag="VHF08_06465"
     CDS             255..1199
                     /locus_tag="VHF08_06465"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024842.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX2068328.1"
                     /translation="MNIAIAGAGVAGSYLGHLLQKHGHDVEIFESSNRENHWPVCAWG
                     ASRNILEKFSEHAGLNFDNYIFHVGKILRMELPNDKKEYLDLKGLVTYNKQKWEQDLL
                     EGVKITYGFKCIRETFPFHQYDYVLDCTGLHRTLLPKSKEDFLIPAYEYLVENIQDKK
                     EDDFYVIGYKGARGYFWYFPLDHRKGYIGAGDIDRKYYGIAEFFRQQPNAKIVKKIGR
                     PIRLAPPKRMEPFYHDNVIGVGESIGCVFPMLGEGIIPSLLCCDIFLDVFDKSHTIFD
                     FKQYRKKVLNKFEYYDNVYRIVRLKMDGKLSTISMSIC"
BASE COUNT          535 a          212 c          305 g          487 t
ORIGIN      
        1 ctttaaccat attgaaaatt cttcttcaca tacctataac tttgatgaat gtatatatca
       61 tcacattatc atagagtgtc tgtatagccg cagaattgtt acagcatgat tacataattc
      121 aaaggaacat agtaaattga aatcagatat ttctattaaa attattaata tattatactt
      181 actttaacac agcgatttcg ggaggcttta aagtaacaag aattataaag aaattacacc
      241 ggagaagaaa taagttgaat attgccattg ccggggcagg ggtggctggt agttatcttg
      301 gacatttgct gcaaaagcac ggtcatgacg tagaaatctt tgaatcttca aatagagaaa
      361 atcattggcc tgtatgtgcc tggggagcct ctagaaatat tcttgaaaag ttttcagagc
      421 atgctggtct caattttgat aattacattt ttcatgttgg aaaaatattg agaatggagc
      481 ttccaaatga taaaaaagaa tatttagatt taaagggttt ggttacatat aataaacaga
      541 aatgggaaca agatttatta gaaggagtta aaattacata tggttttaaa tgcatcagag
      601 aaacttttcc cttccatcag tatgattatg ttcttgattg tacagggcta caccgtacgc
      661 tcctcccaaa atcgaaggaa gatttcctga tacctgctta cgaatatttg gtagaaaaca
      721 ttcaagacaa aaaggaggat gatttttacg taataggata caagggagca agaggatatt
      781 tctggtattt cccccttgat cataggaaag gttacatagg tgcaggagat attgatagga
      841 aatactatgg tatagcggaa ttttttaggc aacagcctaa cgctaaaatt gtaaagaaaa
      901 taggaagacc aatacgtctt gccccgccta aacgcatgga accattctat cacgataacg
      961 taattggggt gggagaatct attggctgtg ttttccctat gttaggagaa ggaataattc
     1021 catcattact gtgctgcgat attttccttg atgtgtttga taaaagtcat accatatttg
     1081 atttcaaaca gtacagaaag aaagtgctca ataaatttga atattatgat aatgtttaca
     1141 gaattgttag attaaaaatg gatggcaagc taagtacaat aagcatgtca atttgttgat
     1201 gagtatgtat aggaatatga agaaagaaga gcagcgtttt ggttttgaaa ttagctttga
     1261 taaaatgaca aggcttctca atgcattata acagttgtat tatcgtattc ttggtcaaca
     1321 acttaagtat ggtagcggtt cattgtatag acgcaaaagt taggtaaatt aatagtggcg
     1381 gcagtacaat gaagtgcttc tatatataga tattgataga tatagatata ttcttcaagc
     1441 ttgaagtaga agttgacaat agaagagatt gctcttctat tctgaacttt ttgaccaaga
     1501 atactataat atctgttata atgcattgag aagccttgt
//
LOCUS       DATAAS010000400         2012 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_971477, whole genome shotgun sequence.
ACCESSION   DATAAS010000400 DATAAS010000000
VERSION     DATAAS010000400.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2012)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2012)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2012
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_971477"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..270
                     /locus_tag="VHF08_06470"
     CDS             <1..270
                     /locus_tag="VHF08_06470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068329.1"
                     /translation="LALMILLGIKKEKHHFVPWVCELVGFLAIVVGDSWFAIIVLTAF
                     VEQLWMSALLLSAHYLLIAGGLIWYLRYYIKWQSKDLIYKIHTKY"
     gene            685..1266
                     /locus_tag="VHF08_06475"
     CDS             685..1266
                     /locus_tag="VHF08_06475"
                     /inference="COORDINATES: protein motif:HMM:TIGR03618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HEX2068330.1"
                     /translation="MQTDKDKDKDKIITSVEIVDVPPKNTETHTILNSRLAEVGATEL
                     TKEEVYRLFNGRNLAFVSTLSKDGSPNVTPVWADMENDMILINTSEAAAKKRNVSRDP
                     RIAISVVEQYNPYNMVSIKGRVIEQTFDGADEHLHKLAKKYLGIGRYYYRRPKHRRIV
                     LKVKPEKIMGLSLHPAFYFLAYSPYSSEIENTQ"
     gene            1442..1663
                     /locus_tag="VHF08_06480"
     CDS             1442..1663
                     /locus_tag="VHF08_06480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068331.1"
                     /translation="MSIISISQKKIFLVQSSGQVTDVPTSVRVLGEGVISIWIDPSRV
                     EEHYGEIPIYGVVADEREFGPGGPGSHRR"
BASE COUNT          701 a          264 c          347 g          700 t
ORIGIN      
        1 cttgcattga tgatcctcct tggaataaag aaagaaaaac atcactttgt tccttgggta
       61 tgtgaattag ttggattttt agctatagtc gttggagata gttggtttgc aattattgtt
      121 ctaaccgcat ttgttgagca attatggatg tctgcattat tattatctgc acattatttg
      181 ttaattgctg gcggtcttat atggtatctt aggtattata ttaaatggca gtcaaaagat
      241 ctcatctaca agattcatac taagtattga catctgtaaa tagatggcat aatttctttt
      301 tttaggataa aaactatatg acaattaaat gcaggtcatg tgataacgat gcagaaatat
      361 tccatgatga agaagatttt gtgtatatac tgttggaatg aaattaaata aatataataa
      421 aagaaacgct atgatattca ctgacagaat ttcatattgg aatgtatgaa tcgagttttg
      481 atgatataag ttccggcggt ttgagaacag cctactgcta gctttcttaa aataaaaagg
      541 taatagtttt ttatttgatt aaaaatgatc atgaatgaat aaatataact attatacaac
      601 tatattgcta gagtcaagtt ttcatatctt gaagtaatct ttgatatgct ttataagata
      661 aaggtttctt actatgatta atagatgcaa acagataagg ataaagataa agataaaatt
      721 ataacttcag ttgaaatagt tgatgttcct ccaaagaata ctgaaacaca tacaatatta
      781 aacagtagat tagcagaagt aggtgctacc gaacttacta aagaagaagt ttatcgactt
      841 ttcaacggta gaaatttggc ttttgtatct actttgtcaa aagatggttc tccaaatgtc
      901 acgccagtat gggctgacat ggaaaatgat atgattttaa taaatacctc tgaagcggca
      961 gcaaaaaaaa gaaatgtatc aagagaccct cgtattgcta tatctgtagt tgaacaatat
     1021 aatccgtata atatggtatc aattaaggga agagtcatag aacaaacttt tgatggtgct
     1081 gatgaacatt tacataaact agccaagaaa tatctaggga tagggaggta ttattataga
     1141 cgacctaaac atagacgtat agtgctaaag gtaaagccag aaaagataat gggtttatca
     1201 ttacatcctg cattctattt tcttgcatat tctccatata gttcagaaat tgaaaatact
     1261 caataataaa tctgagttga gtataaattt cctatatgta gggtgctgtt aaacaataag
     1321 aaaataagaa ttcttttaat cgtaaatgac aaatctcggt attggataat tatatttatc
     1381 tataataact ctaaaatcag agttatggat acattacttc tttaacgaga cacaagacaa
     1441 gttgtctata atttcaattt ctcagaaaaa gatattttta gttcaatcat ctggccaagt
     1501 tactgatgtt ccaacatctg tcagagttct aggagaaggt gtaataagta tctggattga
     1561 tccttcaaga gtagaggagc attatgggga gattccaata tatggcgtcg tggctgatga
     1621 aagagaattt ggcccaggtg gtccaggttc acataggcga taaattaact atctattata
     1681 atctttttaa ctgcaatact gttgctattt tcttttttat ttttgcaaat aatattacat
     1741 agatcattag aaaaatattc tctgatataa aaatgtgtgt cacctaatct aaaataactt
     1801 acaatatgcc ataattatta ttttatccta cacattcagt ttatttttct taccgtccta
     1861 gcgccggccc aaaattctat ttagagataa accatattga tattattatt ctattaagcg
     1921 taaaattagt tgtgatcatt gtgatgtatg tgtgtggtat gtttgatgtt acttttttct
     1981 taatttatct ttttagtatg gtgattaaga aa
//
LOCUS       DATAAS010000401         2415 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3652823, whole genome shotgun sequence.
ACCESSION   DATAAS010000401 DATAAS010000000
VERSION     DATAAS010000401.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2415)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2415)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2415
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3652823"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            200..424
                     /locus_tag="VHF08_06485"
     CDS             200..424
                     /locus_tag="VHF08_06485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068332.1"
                     /translation="MRKVDAFITTEKQIHYYSFRHNYHTSNVVSMYRYDEGEKYRLSC
                     GTGAGNTKTPYSERRILVTILEEKLQVKKW"
     gene            complement(792..1280)
                     /locus_tag="VHF08_06490"
     CDS             complement(792..1280)
                     /locus_tag="VHF08_06490"
                     /inference="COORDINATES: protein motif:HMM:NF024698.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2068333.1"
                     /translation="MTNVEIRLYRKSDSEKVLKLISDIIVNEFKFRLECNLLDSDLMC
                     IEEHYNKPDGGCFWIAEEIIDKQIIGTTGIRNLKQYASTCELKRMYVVKGYRRLGIGQ
                     KLLDTAVDFAKRIGYIRIVLDSSKNLEAARALYLKNGFVDIARYNDNHRADIFMEKSL
                     ID"
     gene            2153..2293
                     /locus_tag="VHF08_06495"
     CDS             2153..2293
                     /locus_tag="VHF08_06495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068334.1"
                     /translation="MKIEIEMNTEITDVSQILQKVSQIVESVKGQGFTITELEIESDE
                     ED"
BASE COUNT          879 a          370 c          357 g          809 t
ORIGIN      
        1 cattagcagc attgaaatta ttatctaaat taaattaatg gtttcaaaga tatctatgga
       61 tttattcact atgaaattat gacatcgaga ttatgtaaat gtataacagt ctaaatcaat
      121 accattataa caattgcaga agcaaaattt taaatgttag attaggagat aaaagagtaa
      181 aaatgatact tctataacta tgaggaaagt agatgcattt ataacaactg aaaaacagat
      241 tcactattat agctttagac acaattatca tacaagcaac gttgtatcaa tgtataggta
      301 tgatgaaggt gagaaataca gactcagttg tggcacagga gcaggtaata ctaagacacc
      361 atattcagaa aggcgtatac tagtaactat actagaagaa aaattacaag tcaagaaatg
      421 gtagatatta taggagcatt acaataacaa acctaaaggg tgcaggagga atcatagcta
      481 tgttacaggt agaaaaatat ctatacctta tctgaaaatg gctaaataat tattagagat
      541 acaacgttca ttgaagaaaa acttccatgg agatgctaat gactgttcct aacatgaatt
      601 agcaatagca aaataagttc aatacttcct ctgccatatc tacctgttgg aagttaatcc
      661 taatagatta ctcatatgct cgctcttcag accctctctt aatgcaaaat taaggagtag
      721 attagaaaat ttgttcaagg aattaatata tatatatata tatatatata aatacattaa
      781 ttaagtatca attaatcaat caagcttttt tccatgaaga tatctgctct atggttatca
      841 ttatatctgg caatatctac aaagccattt tttagataca gcgctcgcgc tgcctctaaa
      901 ttttttgaac tatccaaaac gatccttata tagccaattc ttttagcaaa gtctactgct
      961 gtatcaagca acttttgacc tattcctaaa cgtctatacc cttttactac gtacattcgc
     1021 tttaattcac aagtagatgc atattgcttc aaatttctta ttccagtggt gcctatgatc
     1081 tgcttgtcga tgatctcttc tgcaatccaa aagcaccctc catcaggttt gttataatgt
     1141 tcttctatgc acataagatc agaatccaga aggttacact caagtctaaa tttaaattca
     1201 ttaactataa tatcagaaat gagttttagt actttttcag aatcactttt acgatataac
     1261 cttatttcga cgttggtcaa tatagctata aagatatgcc gctaataaag aaattgttat
     1321 tatacgcttt tctgtacttg aatacttcga atgtttgttt ttactcaata taattattat
     1381 acttcaaaac gtaaatagaa ggaaaaactt ccttgctacg atattgctac tggtgataca
     1441 tgttaaatgc aatcattatc tttatttgtt tagtgttaat aaaagataaa aaatatgaac
     1501 gggttttgtt gttacatgcc agataaactc aaagagactc aaggcaagtt tggatatgta
     1561 ggtgaaatca ttttattgtg atatatgtct tctataatta atattcaatt tctggttaca
     1621 ttgaagattt ccctgtttag gcagatgaaa agttacatgt ctgacaagcg ctataaatct
     1681 caccatcaag atgattaaaa tgtgttctac acgttaagca tgtatgatgt atatcttcaa
     1741 aaccatcatg agcaacaaat gcgaaactct ccagcttttg actcttgcat ttaatacatc
     1801 ggcagccaca tcttatcatt acaaattttc agattaatca aaatataaaa ttttgttata
     1861 atttgtgtat ttattaatgg taattttacg tcaggaatta tattcacatg gatgagtttc
     1921 ccaattaatc aatgcttctt taaccaaagg ttgtatgtct tgatttacat ttataaaatt
     1981 ttgaaatcga aacattagag aacttacaat ataatttctc gtattaaagt gtctttattg
     2041 tccatctttc tttagtaaac gcaataaaga caacctatag cattgataga gtctgctaaa
     2101 gtcagtaact aaagcatcta acatttaaat aagatataat tagatttgag ctatgaagat
     2161 agaaattgaa atgaatacag agataaccga tgtctctcag atcttacaaa aggtctctca
     2221 aatagtggaa tcagtaaaag gacaaggatt tactataaca gagttagaaa tcgaatcaga
     2281 cgaagaagat taggaggaag attaatggtg ttacctttct atttctagtt tgactaatat
     2341 agttaccttt aaaaatatta tagttgtaaa attcattata gaaatccaaa tctcgagtat
     2401 accattatac atcag
//
LOCUS       DATAAS010000402         1692 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3653029, whole genome shotgun sequence.
ACCESSION   DATAAS010000402 DATAAS010000000
VERSION     DATAAS010000402.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1692
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3653029"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            208..1020
                     /locus_tag="VHF08_06500"
     CDS             208..1020
                     /locus_tag="VHF08_06500"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEX2068335.1"
                     /translation="MLFDAHIHLTDDEFIGYIEFVINNLRALKINACSVTVNNETSLR
                     NLQYFNHSTNDVVTKFIGIHPQFASTEDLDKFIEIFNENSSLIEGIGEIGMDPTYVNN
                     NMSSYQKQKEVFEMMLDLAEATKKPVSIHSRRALDDILETLCSYNIQGVLLHWFAGSE
                     KQLKKAMDMGLYVSYGPALVYSKEKKILLKNTDRDKILVETDGPVKYSRCFDNYPAMS
                     SSFLITIVDCVAKIIGISYKEILEILGINSESYLKKSFDNDKDKIPYHQRFS"
     gene            1020..1268
                     /locus_tag="VHF08_06505"
     CDS             1020..1268
                     /locus_tag="VHF08_06505"
                     /inference="COORDINATES: protein motif:HMM:NF013029.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17e"
                     /protein_id="HEX2068336.1"
                     /translation="MDRIRRISTELLEKYPDRFSVDFEENKKIIKEIAIVRSKVLRNR
                     IAGYITSYLHKASVQNEQEISGSDEEELEKGSEIVEEE"
     gene            1268..1549
                     /locus_tag="VHF08_06510"
     CDS             1268..1549
                     /locus_tag="VHF08_06510"
                     /inference="COORDINATES: protein motif:HMM:NF014636.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoaD/ThiS family protein"
                     /protein_id="HEX2068337.1"
                     /translation="MLLITINLLGGAKKIIGASSIVFYRPIASISEILAFLQENAVDS
                     KILDSNNILIAVNGIESSALSGNDTVAKTGDVITIVSVVHGGAFNSLLI"
BASE COUNT          609 a          233 c          303 g          547 t
ORIGIN      
        1 ttacaaatct ctttttgtta cctattttat cctcccaaaa tgaaatatac tcaacctgac
       61 tgatatgata atgctctaaa tatgcttcaa aaaaaagccc atcagataat attattggtt
      121 tcttttttga ttctaaaaac aacgaaatag tacatgctcg gagccagttg aataaatata
      181 ttgttcttat gaacttatct ggtaactatg ttatttgatg cgcatataca tttaacagat
      241 gacgaattta taggttatat agaatttgtc ataaataatt tgagggctct aaaaataaat
      301 gcatgttcgg ttacagtaaa taacgagact tcacttagaa acctccaata ttttaaccat
      361 tcgacgaatg atgtggtaac aaaatttata ggtatacatc cacaatttgc tagtactgaa
      421 gatcttgata aatttattga aatatttaat gaaaatagtt ccttaattga gggtatcggt
      481 gagatcggca tggaccctac ttatgtaaat aataatatga gcagctatca aaaacagaaa
      541 gaagtttttg agatgatgtt agatttggct gaggctacta agaaacctgt ttccattcat
      601 tctagaagag cattggacga tatattagaa actttatgtt catataatat acagggtgtc
      661 ttattgcatt ggtttgctgg aagcgaaaaa caattaaaaa aggcaatgga tatgggcctt
      721 tatgtctctt atggtccggc actggtatat tctaaagaaa aaaagatatt attaaagaat
      781 actgatagag ataaaattct tgtcgaaacg gatggacctg ttaaatactc tagatgcttt
      841 gataattatc ctgctatgtc tagttctttt ttaataacta ttgttgattg tgtagctaaa
      901 ataattggaa taagttacaa agagatctta gagatactcg gaattaattc tgaatcatat
      961 ttaaaaaagt catttgataa tgataaagat aaaatacctt accatcagag gttttcttga
     1021 tggatcgaat tagacgcatt tccactgagc tcctggaaaa atatcctgat agattcagtg
     1081 ttgattttga ggaaaataag aaaattatta aagagatagc tatagtcaga tcgaaggtac
     1141 tgagaaacag gattgcagga tatataacgt catatcttca taaggcatca gtacaaaatg
     1201 agcaagaaat atctggttct gatgaagaag aattagagaa aggatcagag atagttgaag
     1261 aagagtagtg cttttgataa ccatcaatct gctcggcggc gcaaaaaaaa taattggggc
     1321 atcgtcaata gtattttata gacctattgc ctcgatatct gagatcttag cgttcttgca
     1381 agagaatgct gtagattcca aaatattaga ttcaaataat attctaatag cagtaaatgg
     1441 catagaatct tcggcactgt cgggaaatga tacagttgca aaaacaggag acgttatcac
     1501 cattgtctct gtggttcatg gtggggcatt taattcccta ttgatctaaa tagcatgtat
     1561 ataactttct tattatggca ttctaaagtt caaaataaag aaggtatttt aacaatgaat
     1621 taccattaac taaatatcat tatgttatag aaaagatctt atagtgatag atcgatgaga
     1681 atacatctaa tc
//
LOCUS       DATAAS010000403         2502 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_420809, whole genome shotgun sequence.
ACCESSION   DATAAS010000403 DATAAS010000000
VERSION     DATAAS010000403.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2502
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420809"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            406..555
                     /locus_tag="VHF08_06515"
     CDS             406..555
                     /locus_tag="VHF08_06515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068338.1"
                     /translation="MSEKKIPYFKDALVSISDAIQISQACYNIRGERKVEFPHTPGKT
                     VITSN"
     gene            589..1527
                     /locus_tag="VHF08_06520"
     CDS             589..1527
                     /locus_tag="VHF08_06520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX2068339.1"
                     /translation="MIPINEDIIVNAVGVVSKSVVNIASVRMMQDQLFRVFPVEGVGS
                     GVIIDSRCHVLTNNHVVDDAQRLKITLTDGRIFNGKVIGTDETTDLAVVKLDSTESLP
                     FATLGDSDDLKIGQIVIAIGNPFGLTGGPTVTAGITSSLNRKIQFEKGVLELIQTDAA
                     INPGNSGGPLINTKGEVIAINTAKMPYAHGIGFAVPINIAKSVITDLIQNGRVINRPW
                     IGISYIKITRQLAQYYRLPTTEGVLIADVEPYSPADDAGLRKGDIIEEVDGNRIDNTV
                     EISLKIRKKNINDKLTIAINRYGRRFEVPIQLQARP"
     gene            2172..2381
                     /locus_tag="VHF08_06525"
     CDS             2172..2381
                     /locus_tag="VHF08_06525"
                     /inference="COORDINATES: protein motif:HMM:NF018961.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dodecin family protein"
                     /protein_id="HEX2068340.1"
                     /translation="MVYKYIDIVGTSNTDISDAANNAIKEAGKTVKNISWGELGRVTF
                     RIEEGNVEYQAEVRIGFKVKRDEDQ"
BASE COUNT          916 a          376 c          440 g          770 t
ORIGIN      
        1 gtaacctcat ccgcagcaga catcattata gctatgtgaa gtcgtaatag ttaagggtgt
       61 tcctacgttc ttcctactta ctccagtcat ctatatctta aataagatca cagttccttt
      121 ttgattagct tatcatactt aagatagctt aactataaga tatgacctat aatcatgtta
      181 ttagagggaa aaaatttctg atggataaag aaacaacctt ctacagaaac atttactgaa
      241 agagaatcac aatataatat ctataggtca actattagat aggattgcaa ctgtctcttt
      301 ggatatacaa ctccatatgt atgtatgtac ctgtgactgg gttaactcat tcttggtcaa
      361 caaatattca aaattcgact atatacaatg tgatgaacaa tagaaatgag tgaaaaaaag
      421 atcccatatt ttaaagatgc attagtgtca atttctgatg ctatacaaat cagtcaagct
      481 tgctataata tacgaggtga aagaaaggtt gaattcccac atactccagg taagacagtt
      541 attacatcta attaaaaata acaatcagag gagctgcata atatagacgt gatccctatt
      601 aatgaagata taattgttaa tgcggttgga gtagtcagta aaagtgttgt aaatattgca
      661 agtgtaagaa tgatgcagga ccaactattc cgtgtatttc ctgttgaggg tgttggctct
      721 ggcgtaatta ttgatagcag gtgccatgta cttaccaaca atcacgtggt tgatgacgct
      781 cagagattaa agattacgct gactgatgga agaatattta atggaaaagt gataggaaca
      841 gatgaaacaa cagatttggc tgtagtaaaa ttggattcca ccgagtcact tccgtttgct
      901 acattaggcg attctgatga tttgaaaatc ggtcaaatag taattgcgat tggcaatcca
      961 tttggtttaa ctggtggacc aactgtgact gctggaataa caagctcatt gaacagaaaa
     1021 atccaatttg aaaaaggagt gctagaatta attcaaactg atgcagctat aaatcctgga
     1081 aattctggtg gacctcttat caatacaaaa ggtgaggtta tagcaattaa cacagcaaag
     1141 atgccgtatg cgcatggtat tggatttgca gtaccaatca atattgctaa atcagtaatt
     1201 acagatctaa tacaaaatgg acgagtaatc aatagaccat ggattggaat ctcatatata
     1261 aaaataacaa gacaattagc tcaatattat agattaccaa caacagaagg tgttttaata
     1321 gcagatgttg aaccatacag cccagccgat gatgcaggat tgagaaaagg cgatataatt
     1381 gaagaagttg acggcaacag aatagataat actgtagaga tttcactgaa aataagaaag
     1441 aagaatataa atgacaaact tacaatagct attaacagat atggtagacg ctttgaagtt
     1501 ccaatacaac ttcaggcgcg gccataattc ctattattat tatttttatt ataattccca
     1561 gttaaacacg agtgacagag atattcataa tattaatcac atcgtagctt gattatcatt
     1621 actcaatgca taagttgaac attgtataag gtatgcagta aatggattat ttactcattt
     1681 actcattgtt acttctaatt tgcgtgagat aatatatatg tagaaggttc tggacgtctg
     1741 atacccttgt ctttgtgaaa ttacaataac tacgcctact caggtctttg aatgtaatcg
     1801 tgcaactata acgtaacata atcacttggt taattgagcg atgataaggt aaatatcctg
     1861 ttgttaatac aaaaatttac aatcagaata agataatgga taagttctat acataagggt
     1921 ctatatgtct tttatctagt caagtttgaa agtgtattta acatcaaaat agtagacaca
     1981 aatataatta tcatagaaat tagtaaggct aattttttac ttaccatcaa attctctata
     2041 ctcttcttat tgacatagtt ttcattcttt atattgattc tttttgtctg aagatctgta
     2101 atacgatact cttaatagaa tgatttagat acaacatagt atatatatat tgaaatcctt
     2161 gtccttctga tatggtttac aaatatatcg acatagtagg aacttcaaat acagatatta
     2221 gtgacgcagc aaataacgcc attaaagaag ctggtaaaac tgtcaagaac atatcatggg
     2281 gagaattagg acgtgtaaca tttagaattg aagaaggaaa cgttgaatat caagcagaag
     2341 ttagaattgg atttaaagtc aaaagagatg aggatcaata acaaatagcg tattatccac
     2401 ctcatttact tgagaaagaa agatcaaatg atactcatga tattccataa aagcaacttc
     2461 tagatacata aatacgattc agtaaaaatt acagttttaa at
//
LOCUS       DATAAS010000404         2328 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_420980, whole genome shotgun sequence.
ACCESSION   DATAAS010000404 DATAAS010000000
VERSION     DATAAS010000404.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2328)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2328)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2328
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_420980"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..252
                     /locus_tag="VHF08_06530"
     CDS             <1..252
                     /locus_tag="VHF08_06530"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000155 - phosphorelay sensor kinase
                     activity [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine kinase dimerization/phospho-acceptor
                     domain-containing protein"
                     /protein_id="HEX2068341.1"
                     /translation="VLHDKIKDTKQIELLDAIIRNAKRLQRLTEDILDVSKIESQSLK
                     LNKERFNLNDVITNVIDEMMINRRESKNERMMMIIIISN"
     gene            297..635
                     /locus_tag="VHF08_06535"
     CDS             297..635
                     /locus_tag="VHF08_06535"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEX2068342.1"
                     /translation="MTQVISNILSNAIKFTKKGGGSISINTEKEDRHILVSVKDTGTG
                     IDPEIFSQLFSKFATKSYQGTGLGLFISKGIIEAHGGKIWAENNANERGATFSFSLPV
                     SKQQPQSADK"
     gene            complement(1009..2253)
                     /locus_tag="VHF08_06540"
     CDS             complement(1009..2253)
                     /locus_tag="VHF08_06540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2068343.1"
                     /translation="MSLAPQELENTASKYAAEAIRLDSRGSRGMAIQSYQRAIEALVK
                     LVEIYPEYKLNKIYMERASAYQNRIKSLQMSHGIEGDDERMTSVVNHTDERVHPINGN
                     GKTGMHSDSLKKQNNSMDSLKADFDGLIMKEKPDVSWNEVIGLEDAKRAIRESIVYPT
                     KRSDLFPLGWPRGILLYGPPGCGKTLLAAAAAAEIDGYFINVDAAAMMSKWLGEAEKN
                     VSKLFSMARKLNENENVPVLLFIDEIDSLLGTRNSEVGGEVRVKNQVLTEMDGINGKS
                     KELKLYVIGATNKPWTLEAGFLRRFQKRIYVTLPDIASRINLFNQYTTPLKKENTLKN
                     EDLARFSEGYSASDIKDICQSAQLRVVNELFESGKAMDVQANPRSITVSDFKEIFKIR
                     KPSVSTDMIRAYMKWSEQFKAL"
BASE COUNT          747 a          407 c          386 g          788 t
ORIGIN      
        1 gttcttcatg ataaaataaa agataccaaa cagattgaat tattagatgc cattataaga
       61 aatgcaaaaa gattacagcg acttacagaa gacatactag atgtttcaaa aattgaaagc
      121 cagtcattaa aactaaacaa agaaagattc aatctaaatg atgtaataac aaacgttata
      181 gatgaaatga tgataaatag aagagaatct aagaatgaaa gaatgatgat gataataata
      241 atatcaaatt agagtatagg cccaaagata tttttgtaga agcagataga gtcaggttga
      301 cacaggttat ttccaatata ttaagcaatg ctataaaatt tacaaaaaaa ggaggtggat
      361 ctatttctat taatacagaa aaggaagacc gtcacattct tgttagtgtt aaagatacag
      421 gtactggtat agaccctgaa atattttccc aactattctc aaaatttgct acaaaatctt
      481 atcaaggtac tggcttgggt ttgtttatct ctaaaggtat catagaagct catggaggaa
      541 agatatgggc tgagaataat gcaaatgaaa gaggagctac attttcattt agcctaccag
      601 taagtaaaca acagccacaa tccgccgata agtaaatttt taataacaat aatatgctga
      661 tttttaaata ttatctatta tgatcgtaaa tggaatttgt ttttgctgct gtcggtcttt
      721 taccatgaca aattagccag atacagaaca taataaataa gataatagta ctagagagag
      781 atatattttg aagaaactgc ttgattacta gtatattttc ataatataaa tattgtttat
      841 attaggagag aggagcttta gaatatttag tgtatgtgtt aattcaaata ataatctgtc
      901 ttcataaatc agagaattat ttttaatcgg ctggtaagct aaaacttaat gtatcacctt
      961 ttaggagtca gggaagggtc tggttgcgta atacaaaaga aaaactagtt aaagtgcctt
     1021 gaattgctca ctccatttca tatatgctct aatcatatct gtgctaacgc ttggttttct
     1081 tatcttgaaa atttccttaa agtcacttac agtaatggat ctaggatttg cctgtacatc
     1141 catggccttt ccactttcaa acaattcgtt tactactctt agctgggctg attggcagat
     1201 atctttgatg tcgcttgcac tatatccttc tgaaaatctg gcaagatcct cgttttttaa
     1261 ggtattctct tttttcaatg gtgtcgtata ctgattaaat aaatttattc ttgaagcaat
     1321 gtctggaagc gtaacataaa ttcttttttg gaacctccta agaaagcctg cttctaaagt
     1381 ccatggttta ttagttgctc ctataacgta tagcttcaat tctttcgact ttccattgat
     1441 tccatccatc tctgtcagaa cttggttttt taccctaact tctcctccaa cttcactgtt
     1501 tcttgttccc aataacgaat cgatttcatc gataaagaga agaacaggaa cgttttcatt
     1561 ttcatttaat tttcgtgcca tcgaaaataa ttttgataca ttcttttctg cctcaccaag
     1621 ccatttgctc atcattgcgg ctgcatcaac attgataaag tatccatcta tctcggcagc
     1681 agcggctgct gctaataatg tcttaccaca tcctggggga ccgtataaca atatgcctct
     1741 tggccaaccc aaagggaata aatctgatct cttagtcggg tatacaatag attctcttat
     1801 ggcacgtttt gcatcttcta gaccaataac ttcattccaa gaaacgtctg gcttttcttt
     1861 cattataaga ccatcaaagt cagcttttaa ggagtccata ctattgtttt gtttttttag
     1921 gctatccgag tgcatacctg tcttgccatt accatttatg ggatgtactc tttcatcagt
     1981 atggttaaca accgaggtca tcctttcatc atcaccttcg ataccatgtg acatttgtaa
     2041 tgatttaatc ctattttgat aagcgcttgc cctttccata tagatcttgt ttaatttgta
     2101 ttctggatag atctcaacta atttaacaag ggcctcaata gcccgttggt atgattggat
     2161 agccatgcct cgcgaacctc tagaatctaa tctgattgct tcggcggcat atttgctagc
     2221 agtattttct aattcttgtg gagcaagact catattttta ccgtttaaat ggaatccgat
     2281 tcagctttga attactaagt tgtaaatcta tattgcgtaa aaaacaaa
//
LOCUS       DATAAS010000405         1976 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2047266, whole genome shotgun sequence.
ACCESSION   DATAAS010000405 DATAAS010000000
VERSION     DATAAS010000405.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1976)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1976)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1976
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2047266"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(737..1825)
                     /locus_tag="VHF08_06545"
     CDS             complement(737..1825)
                     /locus_tag="VHF08_06545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068344.1"
                     /translation="MLNVRSGSRKLKRQNDSNTITAINRKNDLRIFILNSTPGFQFSL
                     IVLFAIARKYYHDRIRKDGNNNNQRTNNNFVFAFSSREFRDTYSKIACDLGLSRYLVR
                     EIAFPEYTLTLLYLGFIREKEDTGEYEFSLSLDESKWLASVALNIIETGIRSPMEHDT
                     GIFSRNLRSNQEIENLINEIVLTKPSSNQRRGKQEEEEEDQSEKLVTPRSRDYGKGRP
                     SYIPNKQPPTTYSLRKKLRPDEIKRLQKEFMGETCEDCGRKILLDDFDIWIGEPMRRT
                     PSNIQDQRMSDILANSTIITKQSANNNITITLDSKIHSTDRELLELGYGILPMDGRNG
                     FIAFAKPIRNCPICGYNTWNSMSVSPNF"
BASE COUNT          582 a          335 c          288 g          771 t
ORIGIN      
        1 cagaattttg tttgtttagc atttttcttg ttcttcaaca aatttggttt attatatata
       61 atattggcgt ggttaagcct gcctgatcct tttaaatcac aagttctaga atatcatttc
      121 tagatgttcc ttgaagatac agccgtatta cagcgtcttt catttcattg aaattttagt
      181 tatcaaattt ttcagatagt ctgaataccc attattttaa aatgcttcaa atttctaatc
      241 aataagtgaa cgtcaagttc gtcatctaag ccgtcatatt cgtcgtcaaa ttggtcaaag
      301 aagagaatat agggtaataa tgctggtaca gtaatactta ttttaagtat taaatttaga
      361 ttaatagatc tataatatta tcataatcat cgttaagaaa tgaaatacca tctagatgga
      421 tctcaatgcc taatgttaaa gcaaattgga agagtaaagc acttatttat tttccaattg
      481 acttgattat aataattaac aggctcgcat tacactaaag cattgaatta gtggaattga
      541 attagtgcta cgaggcaatt tttcattttg atgttcaagt agttcatatt ttctgtcaat
      601 aatcgcatta tattcgaaaa tttaagagtc aaacgtaact tcaaagaata acctctcttt
      661 ccgttccgct aataactgct tctgcataat gtcatatttt cctcttaaag tatagattag
      721 agaataaaga aattttctaa aagtttggcg atactgacat agaattccat gtattgtatc
      781 cgcagatagg acaattcctt attggctttg caaatgcaat aaagccattt cttccatcca
      841 taggcaatat gccatatcca agttccagaa gctctctgtc tgtagagtgt attttagaat
      901 caagagttat tgttatatta ttattagcag attgttttgt tattattgtc gagtttgcaa
      961 ggatatcact cattctttga tcctgtatgt ttgaaggagt tcgtctcata ggttctccta
     1021 tccagatatc aaaatcatct aagagtattt ttctgccaca gtcctcgcag gtctctccca
     1081 taaattcttt ttgcaatctt ttaatttcat ctggtcttag cttctttctt agactatatg
     1141 ttgtcggtgg ttgcttattt ggaatatatg aaggccttcc cttaccgtaa tccctacttc
     1201 ttggagtgac aagtttttca ctctggtctt cttcttcttc ttcttgttta cctcttcttt
     1261 gatttgaaga gggtttagtt aacactattt cgtttatcaa gttttcaatc tcttggtttg
     1321 aacgtaaatt acggctgaag atgcctgtat cgtgctccat aggagatcta attcctgttt
     1381 ctataatgtt taatgcgaca gatgcaagcc actttgattc atccaaactt aatgaaaatt
     1441 catattcacc tgtgtcttct ttttcacgta taaatcctaa atatagtaaa gtaagtgtat
     1501 attcagggaa tgcaatttct cttactagat atctggataa tcctaaatca catgcaatct
     1561 tactataagt atctctaaac tcgcgtgaag aaaatgcaaa tacaaaattg ttatttgttc
     1621 gttgattatt attattaccg tcttttctta tgcgatcatg ataatatttt cttgcaatgg
     1681 caaacaatac aataagagaa aactgaaaac caggcgttga atttaatatg aatatgcgca
     1741 agtcattctt tctatttatc gccgttattg tgttgctatc attttgtctc ttcagttttc
     1801 tactaccact tcttacattc aacaaagtat catgtcatta taagttattt taagattatt
     1861 ctgttgtttg tttcttctgt aacatcaaaa caattttatt tttgcagaca gacaaaattt
     1921 tacttatgtc atttttcctt attaactctc tacacttgct tatttctttt cttttt
//
LOCUS       DATAAS010000406         1518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5285993, whole genome shotgun sequence.
ACCESSION   DATAAS010000406 DATAAS010000000
VERSION     DATAAS010000406.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5285993"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(607..903)
                     /locus_tag="VHF08_06550"
     CDS             complement(607..903)
                     /locus_tag="VHF08_06550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068345.1"
                     /translation="MEKDKVLFGITHGFVIHIFSKELSKNENCSSHHGITGSKDYPSP
                     NISVSSPRFIGISRPHARYLSSLLGIEVRCVHNGIPLPPKAKEKKEKLIEIKEL"
     gene            complement(991..1164)
                     /locus_tag="VHF08_06555"
     CDS             complement(991..1164)
                     /locus_tag="VHF08_06555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068346.1"
                     /translation="MKAVTWWFSRRALEKGHDITLITTKGSPMAGKCNPKTIKRKITD
                     AKGKKNKYYRHQL"
BASE COUNT          447 a          288 c          198 g          585 t
ORIGIN      
        1 ccgaattgta tacaaatcct tctgaattct caatctataa gattatcaca accaggctat
       61 taccatctat atccaggatc atcttctaat actttttcaa atatagaaag ataattagtt
      121 gtcattattt tgtctatgaa cattcttcca ccctctttct acaagattca ggagtacatt
      181 gatctaagtt atttctttaa ttcttcgacg gtttcgtcta agaaaccatt aactccattt
      241 acaactatat catttaatcc tccattatta agagcaagta taggtttgcc ataagcgttt
      301 acttctactg tatataatcc aaatgcttca agccatgtgg gttccggaca tccgataata
      361 gctttacaat ttcttaatat ctctttttta gtattgttgt caacaagacc ataatattcc
      421 gcatatcctt tgctattgcg acatttctct tttatctttt tttacatata gagaatctac
      481 gccatgtata tcatctccta caatctttat tctgttttct gtttctattg ctatatctat
      541 agcattatgt atcccttttc acgtaaaatt ctgtttagtg aaaggaaata ttctttgtct
      601 ttatcattat aactctttta tttctatcag tttttccttc ttctcctttg cctttggtgg
      661 taatggtatc ccgttatgca cacatcttac ttctattcca agaagagaag ataagtaacg
      721 agcatggggt ctagatatcc caatgaacct aggagatgaa acagaaatat ttggtgatgg
      781 ataatccttt gatccagtaa taccatgatg agatgaacaa ttttcatttt tggataattc
      841 tttgctgaag atatgaataa caaagccatg tgttatccca aacaatacct tgtccttttc
      901 catattccat ttctaatagg tctctgtacg agagataata gtctttttca gcaaaaacat
      961 cccagacagg ctcaattgtt tctaatacag ttaaagttga tgacgataat acttgttttt
     1021 cttccccttt gcatctgtta tttttctttt tattgtttta ggattacatt ttccagccat
     1081 aggagaccct ttagttgtta ttagagttat atcatgacct ttttccaatg ctcgtctaga
     1141 aaaccaccat gttacagcct tcaatccgcc attcgatctt cagggatctt tattcttgaa
     1201 agtaatcggg tggtggagac ggtattttag ggttgctaat aactactatt ttcatgtaga
     1261 ttcaataacc ttcttacttc tctgtatatt tcttttttaa tccatatcat atcaatattt
     1321 ttaccataaa agctgattct gcaagtccaa aaataataat gtattgacca tcatatagat
     1381 aaccgttatt taaagaatag atttattatc atcaatcatc tgccactatc tatccacgca
     1441 tatctaaaat tttcacagac tttagtctta taaattcaat ttgggtaaag attaaaaata
     1501 tcaactttat gagtctta
//
LOCUS       DATAAS010000407         2347 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2049861, whole genome shotgun sequence.
ACCESSION   DATAAS010000407 DATAAS010000000
VERSION     DATAAS010000407.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2347)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2347)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2347
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2049861"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..509)
                     /locus_tag="VHF08_06560"
     CDS             complement(<1..509)
                     /locus_tag="VHF08_06560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase sliding clamp"
                     /protein_id="HEX2068347.1"
                     /translation="MTNLVFKAKTKSPDEWKAVISAISTLVDEATFEATVEGISFRGM
                     DPSHVALIDIHWPNSAFEEYDCDSSVKFGVRVDEFSKLIKRADKKDAIKIAVKEDSML
                     HIEISNSYKKEYKMRLIETSGSSTPLPKLNFNSKVVMTAGAFDKILSDVQVVSEYISI
                     ESEPKKVEFS"
     gene            complement(1310..2263)
                     /locus_tag="VHF08_06565"
     CDS             complement(1310..2263)
                     /locus_tag="VHF08_06565"
                     /inference="COORDINATES: protein motif:HMM:NF014763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEX2068348.1"
                     /translation="MNKLKMVLKKSLIFSCLLVIIVFSFSFLPLNDHTDFSNISQKAI
                     AQGSSLDNLGVQNQTKEKMTITDRSLVVKLLAESLESRINKSAAILEVTSKLPQIRSV
                     SYANFISAELHGISNDLDIPKRKVAQDILTADPNFEVIFFLVSNGDMYMEEPYSNQQN
                     LTRNNFAFRDYYIGAVNTNNTFLGNVIISASSGRPQAYIAIPVYSENNGTFIGVWSGG
                     LNLTLFSESLQSLNLTNGGQRVVYIDQQGQKIADSDKQSLLSNRNQNESFANLQSFKN
                     AVKGESSFSIETINGNRMLIFYTPMKFHSTTWAVLFMQHYN"
BASE COUNT          730 a          394 c          390 g          833 t
ORIGIN      
        1 gagaattcca ctttttttgg ttctgattca atagaaatat attcagatac tacctgaacg
       61 tctgacagaa ttttatcaaa tgctccagca gtcattacaa ctttagaatt gaaattcagt
      121 ttaggcaatg gtgtagagct tccagaagtt tcaattaatc tcattttgta ttccttttta
      181 taactattcg atatttcgat atgcagcata ctatcctctt tcacagcaat tttaattgca
      241 tcttttttgt cagctctttt tatcaacttt gaaaattcat caactcgtac tccaaatttt
      301 actgatgaat cgcagtcata ttcttcaaat gcagagtttg gccaatggat gtctatgagt
      361 gcaacatggg atggatccat tcctctgaat gatattcctt cgacagtagc ttcaaaggtt
      421 gcctcatcga ccagagtgga aatggcagag attactgcct tccattcatc tggagatttt
      481 gttttagcct taaataccaa attggtcaat tagtggctgt catttacagt tttaaacatt
      541 actatattaa atatgcatga tattatcacg ttatgttatt aatcaactta aacaccgtat
      601 cttgagttat ctttaacata ctaggattat cacctatggc tatgttaatt atacccgagc
      661 agactgtcac aagaccatct acattttctt tctctggaat ttgagattat aagaattaat
      721 attaacatgg tgccagggtt tgtgaaacaa atttgacacg atacctagtc cctgattata
      781 tgtctcccct gtgattgctg tctcagttat taaaaatttt ggtgagagaa gttaaaaaag
      841 attttatgca gtctttcttg tagccatctt aatggtagtg ttgatggtgc taatgctaat
      901 gattccttag agttcacaaa cacgccgtca tttattatgc aaaataagat ttgagccacc
      961 aataagaaac ctgcagagag gaagatatca aatatgctga agttatttta tagtaatata
     1021 tggtatagtg gatattctct gctcatgagc cttcagtata taaccacact atttcaccta
     1081 tgcactacat tggttttgga tttagtaaat ccatatgctt ctcctttgtc aatatagttt
     1141 tgtatagaag gaacatttaa gaaaatagtt gactaaatgc cagttcaata gtcaatacat
     1201 gagttgcagt ggtatcagga ttagcgtttg atacttgtcg tgcaatctgt ttattattta
     1261 tctgagaccg acgctaatct gctttgctgg ttgttgctgt tgttgttatc taattataat
     1321 gctgcataaa aagaacagcc caagtagtcg aatggaactt cattggagta tagaagataa
     1381 gcattctatt accattaatt gtttctatac tgaaactcga ttctcctttt actgcattct
     1441 tgaagctttg cagattagca aatgattcat tctgatttct attagataat aatgattgtt
     1501 tatctgaatc agcaattttt tgtccttgct gatctatgta aacaacacgt tggcccccat
     1561 ttgttagatt cagtgattgt aatgattcac taaaaagtgt tagattcaag ccacccgacc
     1621 aaactcctat aaatgttcca ttattttccg aatagaccgg aattgctata taagcctgag
     1681 gacggccaga agatgcagat ataattacat tacccagaaa agtattgtta gtattaacag
     1741 ctccaatata ataatctcta aaagcgaaat tgtttcttgt tagattctgt tggttagaat
     1801 atggctcctc catatacata tcaccgtttg acacaagaaa gaaaattact tcaaaattcg
     1861 gatctgcagt caatatatct tgtgctactt ttctttttgg aatatcaaga tcattggata
     1921 ttccatgcag ctcagcactt atgaagttgg cataagacac agatcttatc tgtggaagtt
     1981 tgcttgttac ttctaaaatt gcagctgatt tattgattct ggattctaaa ctttcagcta
     2041 aaagttttac tactaaactt ctatctgtta tcgtcatttt ttcttttgtt tgattttgga
     2101 ctcctagatt atccaaagag cttccttggg ctattgcctt ttgggatata ttggaaaagt
     2161 cagtatgatc atttaatggc agaaaggaaa aagaaaagac gatgataact aacaaacatg
     2221 agaaaatcag tgattttttt aataccattt tgagtttgtt cattgaataa aaacaataaa
     2281 attatgctga gggattaatt ttgacaagac tatcaataag aatatatcaa caacgaatat
     2341 gaataat
//
LOCUS       DATAAS010000408         1882 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4750498, whole genome shotgun sequence.
ACCESSION   DATAAS010000408 DATAAS010000000
VERSION     DATAAS010000408.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1882)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1882)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1882
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4750498"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(333..695)
                     /locus_tag="VHF08_06570"
     CDS             complement(333..695)
                     /locus_tag="VHF08_06570"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEX2068349.1"
                     /translation="MESLPLNMMMQMIPSGFEWIFIVVIVVVLIFGAKKIPDLARGFG
                     KATTEFEKARIEAKRELREIKNAGTSSSSSTTTNTAANREKLESIADTLGIDYTDKDD
                     DQLRLAIETEINKSQTKA"
     gene            complement(747..1577)
                     /gene="tatC"
                     /locus_tag="VHF08_06575"
     CDS             complement(747..1577)
                     /gene="tatC"
                     /locus_tag="VHF08_06575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEX2068350.1"
                     /translation="MSSSGMSIFEHINELRSRILRIVISMVIITIFCMSIGIKPITFD
                     LDGNNNNNANDLKLYYPYPDPFRNIALQLTKYMESTLLPPEVKLIQTAPGQAFFAHVY
                     VSLLLGIIGSMPIIIKEIYGFISPAIGKHTKKIGVINVFLPTVSLFIIGMAFSYVIVI
                     PFTLNFLYNYGLAIGVETFLNINEFISFVLQFFLGFGIAFELPVVMYAISLTGIVDSN
                     FWRNNFRYAAIILVIFGALITPDGSGITMWFIAVPMITIYLIGMLAIRRREKKTLEIS
                     "
BASE COUNT          649 a          320 c          281 g          632 t
ORIGIN      
        1 agtctctacg cgtaatcttg ccatctgata agttagtgtt gttattatct gacacttatc
       61 tgcttattct tatagattat aaaagcgttg ttgtaaattt ttgatatttt attccccaat
      121 acataatagc agaaaataaa ttatacccgt gttactatgt ttctctagta ttttatccat
      181 agtaggaaac tcctgtatat ttttaccata tggtaacttg ctgcaattaa gattataact
      241 aacaattaaa ttatacgaaa aaaacagcat aaaaatataa agaatcggaa taagaataaa
      301 aaagataaag gataaaaaat tataatatat tcttacgctt tggtttggct tttattaatt
      361 tcggtttcga tggctaatct aagttggtca tcatctttgt cggtataatc aattcctaga
      421 gtatcagcaa tagattccag cttttctcta tttgcggctg tatttgttgt cgttgatgat
      481 gatgatgatg ttcccgcatt tttaatttca cgaagttctc tttttgcttc aatcctagcc
      541 ttttcaaatt ctgtagtagc tttaccgaaa cctctagcaa gatctggaat tttctttgca
      601 ccaaaaatga gaactaccac tatcacaaca ataaatatcc actcaaatcc tgaaggtatc
      661 atctgcatca tcatattcag aggtaagctt tccatttcaa cattcatatt aatagcaacg
      721 atttaagggt tttcctttaa tacactttac gaaatctcaa gggttttctt ctctctcctt
      781 ctaattgcca gcatacctat aagatatatt gtaatcatag gcactgcgat aaaccacata
      841 gtaattccac tgccatctgg agttatcaat gcaccaaaaa taaccaaaat tatagcggcg
      901 tacctaaagt tatttctcca aaaattcgaa tcaactatgc ctgtaagaga aattgcatac
      961 attacgacag gaagttcaaa ggcaattccg aatcccaaaa agaattgcaa tacaaaagag
     1021 ataaattcat tgatattaag aaacgtctca acacctattg ctagaccgta attgtataga
     1081 aaattaagag taaatggaat tactatgaca taggagaatg ccatacctat gataaacaga
     1141 gacacagtag ggagaaacac attgattact ccaattttct ttgtatgttt gccaattgct
     1201 ggagagataa agccatatat ttctttgata attattggca tagaaccaat aatgccaagt
     1261 aataatgaga catatacatg agcaaagaat gcctgcccag gagctgtttg aattagcttt
     1321 acctctggcg gaagaagagt gctttccata tatttggtaa gctgaagagc aatattccta
     1381 aatggatcag gataaggata atataatttt agatcatttg cgttgttgtt attattacca
     1441 tctaaatcaa atgtaatcgg ttttatcccg atactcatac aaaaaatagt aataattacc
     1501 atagaaatta caatacggag tattcttgag cgtagctcat tgatatgctc aaatatagac
     1561 atcccagaag acgacatggc ttcgtttaac aaacaaacaa tatatcttgg aaatataata
     1621 gtgtgtcggc tgatatctca ttgactatct ttgataatta tgttataata taacgctaca
     1681 ttctgcaaag tcttttcttc atatatactc tattttgcca aaaaactatt ttctcaattg
     1741 gagcccttta atttttcctc atcttcttgt tttcttcttt aatctttaat cctagtcctc
     1801 caaatatgaa gagttcattt agtaaatgaa aaacagtatg tagaaaagag agagaagtaa
     1861 gagagataaa catatatttt at
//
LOCUS       DATAAS010000409         2067 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4753333, whole genome shotgun sequence.
ACCESSION   DATAAS010000409 DATAAS010000000
VERSION     DATAAS010000409.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4753333"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..210
                     /locus_tag="VHF08_06580"
     CDS             <1..210
                     /locus_tag="VHF08_06580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068351.1"
                     /translation="LKNKQVYHNILFKNKDILSNRTEEENYKVIDLDPNELIVFEYDS
                     RKKKYDIKNSANNHDNNIILIVPMQ"
     gene            264..1712
                     /locus_tag="VHF08_06585"
     CDS             264..1712
                     /locus_tag="VHF08_06585"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: protein motif:HMM:NF016724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX2068352.1"
                     /translation="MLGNTKERPLADSSSRSIPCILNLKFPFNLTKDQYEAVEAWVSN
                     KSRGSIIYSTGTGKTEIAFECARRRAEEKLHHSNVSHSRLDNNNDDSSCHYNSIIPSL
                     LCLVPRIVLVEQNFKRLLSYNIPKEFIGVYFGERKEIREITISTYQSIINNLGLIHNS
                     DMIIFDEMHLLTDSAITLRKIFDVLQEEGNSANKKALLGLTATIDEQHPNYNTVVSLL
                     PPVKKYMIREAVEDGRLAKPIVIPIKVKLTFEEKKLYDDYSVKIRNISDELNVSDPQL
                     MSSLLRKGGLSARLARSWFENVRNRKNLINCAQNKLSSAADLIATKHPSERIMVFSET
                     IESIKKLKDILEKEKGIKSMIIESKLKSKDRQDILSKWGTDFYPLLSVHTLEIGYDVP
                     QVRIAIMLASTSNMNQAAQRIGRILRKAEGKNTALIYTIYLSGTHDYNHLGIVKQATQ
                     IDGKGKEVNNNSKVISSSSATTTNSTLDAFMT"
BASE COUNT          829 a          291 c          365 g          582 t
ORIGIN      
        1 ttaaaaaata aacaagttta tcataatatt ttatttaaaa ataaagatat actctcaaat
       61 aggactgaag aggagaatta taaagtcatt gaccttgatc caaatgagct gatagtcttt
      121 gaatatgatt caaggaagaa aaaatatgat attaaaaata gtgcaaataa tcacgataat
      181 aatatcattt taatagttcc tatgcaatag agttatttca ttgtcacttc agtcgttaga
      241 ctataacgca gggtaataat atcatgctag gaaacacaaa agaaagacca ctggcagact
      301 catcaagtag atcgatacca tgtattttaa atctaaaatt tcctttcaat cttacaaagg
      361 atcaatatga agcagttgag gcgtgggttt ctaataaaag cagaggatca ataatataca
      421 gcaccgggac aggaaaaaca gagatagcat ttgaatgtgc aagaaggaga gcagaagaaa
      481 agctacatca tagcaatgta agccatagcc gtcttgataa taataatgat gattccagtt
      541 gtcattataa tagcataata ccatctttac tctgtttggt tccacgaatt gttctagtcg
      601 agcagaattt caaaaggtta ctgtcttata atatacctaa agaattcata ggcgtatatt
      661 ttggagaacg taaagaaata agagaaataa caataagcac ctatcagagt ataattaaca
      721 atttaggatt aattcataat tctgatatga taatatttga tgaaatgcat ttacttaccg
      781 attcagcaat aactttgaga aagatatttg atgttctaca agaagaaggt aattctgcta
      841 ataaaaaagc attattggga ttaactgcaa caatagatga acaacatcct aactacaata
      901 cagttgtctc tttacttcca ccagtcaaaa aatatatgat aagagaggca gtagaagatg
      961 gaaggcttgc aaaaccaata gtaataccaa taaaggttaa actaacattt gaggagaaaa
     1021 agctctatga tgactactcc gtgaagatca ggaatatttc tgatgagttg aatgtatctg
     1081 atccacaatt aatgtcttct ttattgagaa aagggggctt atcagccaga ttggcaaggt
     1141 catggtttga aaatgtaaga aatagaaaaa atctgattaa ttgtgctcaa aataaactat
     1201 catctgcagc cgatctgata gcaacaaagc atccatcaga aagaataatg gttttcagtg
     1261 agacaataga atctatcaag aaactgaagg atatattaga aaaggaaaag ggaataaaat
     1321 caatgataat tgaaagcaaa ctaaaatcta aagaccggca agatattcta tctaaatggg
     1381 gcacagattt ttatcctttg ctttcagttc acacattgga aattggatac gacgttcctc
     1441 aggtaagaat agccatcatg ttggcaagca cttcaaatat gaatcaagct gctcagagaa
     1501 taggaaggat attgagaaag gctgaaggaa agaatactgc attgatatat acaatatatc
     1561 tttcaggcac gcatgactat aaccatttgg gtatagtaaa acaagcaaca cagatagatg
     1621 gtaaaggaaa agaagtaaat aataatagca aggttatatc atcatcatca gcaacaacaa
     1681 caaacagcac attagatgct tttatgacct aatgaacacc atgtaggaaa tagtaaaaga
     1741 agcagaaaac tttaattttc taatcagaat aaataattat ccaaatgatg tattctaata
     1801 cacatagtac tttgatagag aatttaatgg acttacactt tgaagtatct ttgctgaatt
     1861 ctgataggaa atttaggtaa tggatatcta attggaagtg gcagaaaaga aagagagatt
     1921 agcaatgata catgtgtatc ctaatgcaat agccaatatt aattagttaa tttaaaaaga
     1981 acttagagtg tatcatatcg gcatctagat gcaactagtg cattaccatt atcattatta
     2041 tatgtaagaa gaaattcagt cagtcag
//
LOCUS       DATAAS010000410         2722 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4753577, whole genome shotgun sequence.
ACCESSION   DATAAS010000410 DATAAS010000000
VERSION     DATAAS010000410.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2722
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4753577"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            349..915
                     /locus_tag="VHF08_06590"
     CDS             349..915
                     /locus_tag="VHF08_06590"
                     /inference="COORDINATES: protein motif:HMM:NF018712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1326 domain-containing protein"
                     /protein_id="HEX2068353.1"
                     /translation="MDIEKGHFDNNNRINLNNLNVAAILYAPGNMFTGPKMVMALYLD
                     ETASNDQKAALTEIFSGKVGGFFSVAAIPIEEVLGVKSVPIEFSVEAKRRRIKIPTTT
                     LELEVEGEEMIGSDSNRELILVNPAFTVAPGYDPVIAHSTKYTYNDHGLERDNTGRMH
                     STLDSPILPNSISIPIWAYDFYLCSCFL"
     gene            975..1982
                     /locus_tag="VHF08_06595"
     CDS             975..1982
                     /locus_tag="VHF08_06595"
                     /inference="COORDINATES: protein motif:HMM:NF021465.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2182 domain-containing protein"
                     /protein_id="HEX2068354.1"
                     /translation="MNRIQKILIFSLLFISAIMWLVSIQQYNTMMSTMMMFYNPIALS
                     IFTLIWTTGMAAMMFPAVSPMVLLYDRLIRGNNNNTVNRSVKEGKSSPIVSKEKEKKE
                     DEEEVKKSSSSLLEFLPRPSYSLKIILFVGSYLAVWALTGIALLIAWSVPINYFFMGM
                     NSSLISKQQLDLVFGILLILSGLYQFSPLKTKCLGYCESPMSFFMRRWRSGTIGAVKM
                     GTYHGLYCLGCCWPYFLLMIALGWMNLLWMALFAAIIFGEKIWLRGGIWVARSAGISF
                     IIIGVLAISGLIEIPTGIEIGKDNVIMDDSMHMTPMDMGNNNNINMKDNDNMNMNENT
                     K"
     gene            complement(2121..2255)
                     /locus_tag="VHF08_06600"
     CDS             complement(2121..2255)
                     /locus_tag="VHF08_06600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068355.1"
                     /translation="MIINEEKATTETKLQRPQLKVFHSINNTNFTICYAIEVVLNPST
                     "
     gene            complement(2340..2627)
                     /locus_tag="VHF08_06605"
     CDS             complement(2340..2627)
                     /locus_tag="VHF08_06605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068356.1"
                     /translation="MKNSIILGLIALQVLLAVGTLSSVATPVLAAEKSADDKINKMYE
                     ICDKVIDYYDDYKFGDDKTYKVYKLCEMLVYETPLYDSYDPYDPYNTSDED"
BASE COUNT          908 a          408 c          500 g          906 t
ORIGIN      
        1 aaaccagata atcaccaatt ttagcgaagt attctttttc attcattttt ccttgcttat
       61 acagctgggt tgaatcaata aacgactcat acttgtcttg agtatcattt atctgctgtt
      121 tcaatttctc agtcagtgat cctagaacat ctactgcgcc agaatacatt attcttatta
      181 agaatataga ttgcggcgtt aataaaagtt tgaacttacc tcaaactaca taagtattgc
      241 ctaaaacaat tggtaaccgt caacatagaa ttcctatgcc gtagatgaag tttacccttg
      301 tatctttatg ttagatccaa ctgaaggaga atctaaagct gcaatagctt ggatatagag
      361 aaaggtcatt ttgataataa taatagaata aaccttaata atcttaatgt agctgctatt
      421 ctttatgctc ctggcaatat gtttacagga ccaaagatgg tgatggctct ttacctagat
      481 gagacagcaa gcaatgacca aaaagctgcg ctaactgaga tattctcagg aaaggtcggt
      541 ggcttcttta gtgttgcagc tattccaata gaggaagttt taggagtaaa atctgttcca
      601 atagaattct ctgtcgaagc caaaaggcgc agaataaaaa taccaactac tacccttgag
      661 ctagaagtag aaggagaaga aatgataggt agtgattcaa atagagaact gatattggtt
      721 aatccagcct ttaccgtcgc acctggttat gatcctgtta ttgcacactc tacaaagtac
      781 acatacaatg atcatggact agaaagggat aatactggaa ggatgcattc tactctcgat
      841 tcacctatac tccctaatag tataagtata cctatttggg catatgattt ttatctttgt
      901 tcctgtttct tatgatagat agcatcaata cccaaactca ctgatgcaaa aatggaaagg
      961 tagaaaagta aaatatgaac agaatacaga aaattttgat tttttcgtta ttattcatat
     1021 ctgcaataat gtggcttgta tcaatacagc agtataatac gatgatgtct accatgatga
     1081 tgttctacaa tccaatagca ttatccatat ttacattgat ctggacaaca gggatggccg
     1141 caatgatgtt tccagcagtt tctcctatgg ttttactcta cgacagactg attagaggta
     1201 acaacaataa tacagttaat agaagtgtga aagaaggaaa atcatctccg attgttagta
     1261 aagagaagga gaaaaaagaa gacgaagaag aagtaaagaa gtcatcatcg tcattattag
     1321 aatttctacc acgaccatcg tattcattga agataatatt atttgttggt tcctatcttg
     1381 cagtatgggc tttaacaggt attgccctcc taatagcatg gtcagtccca atcaattatt
     1441 tcttcatggg aatgaattct tccttaatta gtaaacaaca acttgattta gtatttggaa
     1501 tcttactaat attatcagga ttatatcaat tcagtccact aaaaacaaaa tgccttggat
     1561 attgtgagtc tccaatgagc ttctttatga gaagatggag aagtggaaca attggagcag
     1621 tcaagatggg aacatatcat ggcttatatt gtcttggatg ctgttggcct tactttctgc
     1681 taatgatagc tctaggttgg atgaatttgt tatggatggc cttatttgca gctataatat
     1741 ttggagagaa aatatggtta cgtggtggta tatgggttgc taggagtgcg ggaattagtt
     1801 ttataattat tggagttttg gcaatatctg ggctaatcga aatcccaact ggtattgaga
     1861 ttggtaaaga taatgttatt atggatgata gcatgcatat gactccgatg gatatgggta
     1921 ataataacaa tatcaatatg aaagacaatg ataatatgaa catgaatgaa aacacaaaat
     1981 aatagaatat ctaatgtaaa taaccatgta taatatgaaa taactttaat aatacttaac
     2041 agcaatatta tgaattataa tcataaattc aaagaatgaa aatagaagaa ttgttgaagg
     2101 tagtggtgca gttttttctg ttatgttgat gggtttaata ctacctctat tgcatagcat
     2161 atagtaaaat tagtattatt gatagaatga aaaactttga gttggggtcg ctgcagtttt
     2221 gtttctgttg ttgctttttc ttcatttatt atcaaataat atcacttgga tttagagaat
     2281 aaaatgttat tagttatatt gaaaaagaaa agaaagaaat tttatggatt tactgtttat
     2341 tagtcttcgt cagatgtgtt atatggatcg tatggatcat atgagtcata caagggtgtt
     2401 tcataaacta acatttcgca caatttgtat accttgtagg ttttgtcatc gccgaatttg
     2461 tagtcgtcat agtagtcaat taccttatcg cagatttcat acatcttgtt aattttgtcg
     2521 tctgcggact tttcagcggc taaaactggc gttgctacac tgctcaatgt tccaactgct
     2581 aataaaacct gcaatgctat aagacctaag atgatcgagt tcttcatcaa aacaattaga
     2641 ctctgtaatt ataaaggctt tcattaactt tttttaggaa ttttatattt ttttatatat
     2701 aaataaagaa tttctagtga tg
//
LOCUS       DATAAS010000411         3988 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_432114, whole genome shotgun sequence.
ACCESSION   DATAAS010000411 DATAAS010000000
VERSION     DATAAS010000411.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3988)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3988)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3988
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_432114"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            344..1321
                     /gene="hisG"
                     /locus_tag="VHF08_06610"
     CDS             344..1321
                     /gene="hisG"
                     /locus_tag="VHF08_06610"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEX2068357.1"
                     /translation="MNTVKFAIPKGSIEDATFRILEEAWQTVSGRGRTYRVKLSDSEI
                     DVKILRPQEIPTYVQEGFYDVGITGKDWIREAKADVKILLDLEYGRVKQVIAVPQSFQ
                     FNDLTGLITEFAKNNKTLRISSEYLTTTASHIKSNFAYRKYFGGSDPMIITPWLRVGE
                     NKHVQIFLSFGATEAKPPEDVDAIFDITETGNTLAQNNLKIIDRVMESSAVLVANKNA
                     LKDPKKREKIADMIALLKGVVEGRKKLHIFVNVKKKNLNKLLKNLPALKKPTISPLSE
                     DGWYGVNTIIDKTEFIKIVPIMRKMAQGLVVMEPRQILPLHEINLDEYS"
     gene            1318..2607
                     /gene="hisD"
                     /locus_tag="VHF08_06615"
     CDS             1318..2607
                     /gene="hisD"
                     /locus_tag="VHF08_06615"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF013013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEX2068358.1"
                     /translation="MIRTIIVKNAKSDAENLRNSSNSISNELIQRIKVIMEDIEKYGD
                     SAIMDYEEKFDGIRLNSLKVTDEEIREAYNKVTKKQIQSIKMIRNSLIKTEIALFKQL
                     QKISLSSYGVKIQRMIQPISSVGCYIPGGQARYPSTMLMCAVPAQVAGVKRIVAISPP
                     LKDGKIDPLTLVSAEICGVDEFYKIGGAQGIAALTFGTQSINKVSKIVGPGGVFVSIA
                     KTLASARVSIDMVAGPTELVVYADAKTDARLIALDMISQAEHSYDTFCGLVTTSKELA
                     GQVNTEIRSLLNNNSINRIDIVKRSLIENGFFAICKNESSAIEFINEVAPEHLEIMAK
                     NARTISKQITSAGLILIGSFTPSSASDYCLGSNHILPTMGFGKSRASLSVLDFIKIVN
                     KVEATRTGLKKVESKIREIALAEGLMNHYEAVKERIK"
     gene            2607..3674
                     /gene="hisC"
                     /locus_tag="VHF08_06620"
     CDS             2607..3674
                     /gene="hisC"
                     /locus_tag="VHF08_06620"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: protein motif:HMM:TIGR01141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004400 - histidinol-phosphate
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEX2068359.1"
                     /translation="MRPWFSEKLERLSKLDNYIRPEKIKNSIKLDSNENFLLNKNFIS
                     EIALQALKYTDLREYPLEQFEEIYERLEGYIGISKKYLAIGNGSDQIIELILSIIGRE
                     KRATIFTPTFSYFVNRCKLHDITVNRVPLNTTDNALRKEEFLNSGKQSDVVYICSPNN
                     PTGNQFDKQLVLEIIDMLEDKLIVVDEAYVEFADYSLTSDIAKYNNVVILRTLSKAFG
                     LAGARIGYLISDEKFAHVFRSIIQSPYPVNSLSLTIASIMFSNYSYIKATIELIKNER
                     KRVFDCLSKLNGIKVFNSNANFIFMETYDKYNAILKELEKGGIVVKKIGDIQGYRGCI
                     RVTVGTKEMNDKFIKSIEKVV"
BASE COUNT         1476 a          571 c          729 g         1212 t
ORIGIN      
        1 tcaaaatgtc tatggatgaa agtcaggcct cagcatttgc aggaaccttt acctttgata
       61 agtaactttt gataaattct gtaaatcgga tatggcagcg cttcctgata acgcaattaa
      121 ttcatcccta aagtgtcaat atgttaacac gacctttgaa tatattttta atctaatcta
      181 aactaaaaat atatttaatt attggtgagt ttcatgtaaa aactcataac aaagaatagt
      241 ataaatcaat tcttaaaaca agaatgactt gagataaaaa ttgtacattc ccaaggtttt
      301 taataaatat atatccgata acagattttg cttatatatt catatgaata ctgtgaaatt
      361 cgcaatccca aaaggtagca ttgaggatgc gacatttaga attcttgaag aggcatggca
      421 aaccgttagt ggccgtgggc gtacttatag agtaaaactc agtgattctg aaatagatgt
      481 caaaatatta agaccacaag aaattccaac ttatgttcaa gaaggcttct atgatgttgg
      541 aattacaggc aaagactgga ttagagaggc caaagcagat gtcaaaatat tacttgattt
      601 agaatatggc cgagtaaaac aagtaattgc agttccacaa agttttcaat tcaatgactt
      661 gacaggatta attacggagt ttgccaaaaa taataaaact ctaagaatat cttcagaata
      721 tcttactact acagcttccc atataaaatc taactttgct tatcgaaaat actttggagg
      781 cagcgatcct atgatcatta ctccgtggct aagggtggga gagaataaac atgttcagat
      841 attcctttcc tttggagcca cagaggcaaa gccacctgaa gatgttgatg caatttttga
      901 tattactgaa actgggaaca ctcttgctca aaataatctg aagataattg atagagttat
      961 ggagtcttct gctgttcttg ttgcaaataa gaatgctctg aaggatccta aaaaaagaga
     1021 gaagatagct gatatgattg cattattaaa aggagtagta gaaggccgta aaaagcttca
     1081 tattttcgtt aatgtaaaga aaaaaaatct caataaattg ctaaaaaacc tgcctgcatt
     1141 aaaaaaacca acaattagcc cattaagtga agatgggtgg tatggagtaa atacaattat
     1201 tgataagact gaatttatca aaatagttcc tataatgaga aagatggctc aaggcttagt
     1261 tgtaatggag ccaagacaga ttctgcctct gcatgagata aatttagatg agtattcttg
     1321 ataaggacaa ttattgttaa gaacgcaaaa tctgacgctg aaaatttacg aaattcgagc
     1381 aatagcattt ctaatgaatt aattcaaagg ataaaagtga taatggaaga tatagaaaaa
     1441 tatggcgact cagcaattat ggattatgag gaaaagtttg atggtattag gttaaattca
     1501 ttgaaagtta cagatgaaga aataagggag gcatataaca aggttaccaa aaaacagatt
     1561 caatctatta agatgataag aaatagtcta attaagactg aaattgcact tttcaagcag
     1621 ttacagaaaa tttcactttc atcgtacgga gtaaagattc agcgtatgat tcagcctatc
     1681 tctagtgttg gatgctatat tcctggtgga caagctcgct atcctagtac gatgctaatg
     1741 tgtgccgtcc ctgcacaagt ggctggagta aagagaatag tggcaatatc tccaccatta
     1801 aaagatggaa agatagatcc tttgactctt gtatcagcag aaatttgcgg tgttgatgaa
     1861 ttctataaga taggtggtgc acagggaatt gcggctttga cttttggaac tcagagtatc
     1921 aacaaagtaa gcaagatcgt tggtccagga ggtgtgtttg tctctattgc caaaactctt
     1981 gcttccgcta gagtctcaat agatatggtt gctggtccta ctgaattagt agtatatgca
     2041 gatgcaaaga ctgatgcaag gctaattgca cttgatatga tatcgcaagc agaacacagc
     2101 tacgatacat tttgtgggct tgtcacgaca tcaaaggaat tagcaggaca agttaataca
     2161 gagatccgat cccttcttaa caataactct atcaatcgaa ttgatatcgt caaaagaagt
     2221 ttgatagaga atggattctt tgcaatctgt aaaaatgaat cttcagcaat agaattcata
     2281 aatgaagtag caccagaaca tttggagata atggcaaaga atgcaagaac aatttcaaaa
     2341 caaattacat ccgcaggttt gatattgatt gggagtttta ctccatcttc agctagtgat
     2401 tattgtttgg gttctaatca tattcttcca accatgggct tcggtaaatc tagagcatca
     2461 ttgtccgtcc tcgattttat aaagatagta aataaagtag aagcaactag aacaggtttg
     2521 aagaaagtag aatctaaaat tagggaaatt gcattagctg aaggtttgat gaatcactac
     2581 gaagcggtaa aggaaagaat aaaataatga ggccttggtt ctccgagaag ttagaacggc
     2641 tctccaaact tgataattac atcaggccag aaaaaattaa aaactctatt aaattagatt
     2701 caaatgaaaa ttttctgtta aataaaaact ttatttcaga aattgcttta caagctctaa
     2761 aatacacaga tttaagagaa tatccactag agcaatttga ggagatatat gaacgactgg
     2821 aaggatatat aggcatcagt aaaaagtacc tcgcaatagg gaatggatca gatcaaataa
     2881 ttgaattaat tctttcgatt attggaaggg aaaaacgagc tactattttc acaccaactt
     2941 tttcttattt cgtaaaccga tgtaaattac atgatataac agtcaataga gtaccattaa
     3001 atacaacaga taatgcccta cggaaagaag aatttctaaa tagtggcaaa caatctgatg
     3061 tggtttacat ttgttcccct aataatccca ctggcaatca atttgacaag caattagttt
     3121 tggaaattat agacatgctt gaagataaat taattgtagt cgatgaggca tatgttgaat
     3181 ttgcagatta ttctttaact tcagatattg caaaatataa taatgttgtc atattgcgca
     3241 ctctgtctaa agcatttgga ttagctggcg cgagaatagg ctacttgata tctgatgaaa
     3301 agtttgcaca tgtatttaga tcaataatcc aatctcctta tccagtcaat agtctatcat
     3361 taacaatagc aagtataatg ttctctaatt acagttatat caaagctact attgaattga
     3421 ttaaaaatga aagaaaaaga gtgtttgact gtctctccaa attgaatgga attaaggttt
     3481 ttaattctaa tgcaaatttc attttcatgg aaacctatga taaatataat gcaattctaa
     3541 aagagttaga aaaaggagga atagttgtta aaaagatagg cgatattcag ggttataggg
     3601 gatgtattag agttactgta ggtaccaagg agatgaatga taaatttatt aaatcaatag
     3661 aaaaggtagt ataagaacaa tcaatagtga tttgattatc tttatcaaat atcaattatg
     3721 tattgtatgt ttattgatca catactgaaa aataatataa taatgtttat cattataaaa
     3781 aacttaaatt tggcagaatg ttttctcttc taaattatta tgatttagta tctttggaca
     3841 taaattaatt atatatctat acataaaggt ccaataacaa aaataatata tataaattat
     3901 atttatatgg ataatagatt agatatcctg gaaaaaaacg attgctggat aatgataatc
     3961 caggaacata aatatcactt attcaagt
//
LOCUS       DATAAS010000412         2472 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3124994, whole genome shotgun sequence.
ACCESSION   DATAAS010000412 DATAAS010000000
VERSION     DATAAS010000412.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2472)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2472)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2472
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3124994"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..306
                     /locus_tag="VHF08_06625"
     CDS             <1..306
                     /locus_tag="VHF08_06625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068360.1"
                     /translation="KFRKTIRIESIIGIGVLFAASFLTITSPPHSSTMMGHGQVAPFM
                     TQTPLSEGSSDLNEIPLSLDSFAILTIVLSALVSVGSAFYLRKSRQQLKKTTEYLQY"
     gene            complement(518..1315)
                     /locus_tag="VHF08_06630"
     CDS             complement(518..1315)
                     /locus_tag="VHF08_06630"
                     /inference="COORDINATES: protein motif:HMM:NF016149.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0042597 - periplasmic space [Evidence
                     IEA];
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopC"
                     /protein_id="HEX2068361.1"
                     /translation="MRQNYSSSFLLTRNTLAGILIIFLIATLLLENNAYGHANPISYS
                     PAANSIIQQVNEQSLPSKVTILFSERPEPKVSYIHVTNSKNERVDNNDYAISEQNNRE
                     AAVTLDTSNLSPGVYTVSWLTLSRDDGHISKGSYVFSISPSQQSSSSNPVSGNKTFSE
                     QTTIDNVNLKNEIAPFSVGINTFNITLTDQQGNPAKNIRNVIMQFTNTESNIGPIVAN
                     LAKKGEGQYSVTGGYLSQPGEWEIKIIVQRSGAYDLNYSFKETIREG"
     gene            1416..1973
                     /locus_tag="VHF08_06635"
     CDS             1416..1973
                     /locus_tag="VHF08_06635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068362.1"
                     /translation="MKNKIMFSVLLLAIVASMSFMIIGSSIIVASAQQTTGTMEHGEG
                     QTNATIVRDSTAFLLSGEIIPAESFIHLYDSTPDAIALGHLAAKIPCDEDSNSTLTIL
                     TGVAPDFQPAELELVQNLSTPGELCLYHADLESTQGGEIITDIAIQNPDEEEDVTFPD
                     TSTVVIGINRILPGGAQEHAHAGEE"
BASE COUNT          799 a          409 c          411 g          853 t
ORIGIN      
        1 aagtttagga aaacgataag aatagaatct ataatcggaa ttggtgtgct gtttgcggcc
       61 tcatttctta caataacatc acccccacat tcttctacaa tgatgggcca tggacaagtc
      121 gcaccattta tgacacaaac accattgtct gaaggttcaa gtgatttaaa tgaaatacca
      181 ttatcactag attcatttgc tatattgaca atcgtcttat cagcactagt tagtgtgggt
      241 agtgcttttt acttacgaaa aagccgacaa caactaaaaa agacaacaga atatcttcaa
      301 tattagggtg tttacttgat tttctctacc tatagagata aatatatata gttatacata
      361 ttttttgtag acggcaatga tattataatt tttaaacaat tatgatatgg agaaatatgg
      421 catatatata ctactcattg ttgataacac aaaaataaca attagcgatt cgatagattt
      481 attggcattt atgaattagc taataaaaat ggataatcta gccttccctg attgtctctt
      541 tgaaactata gttcagatca tatgcaccac tcctttgcac tataatctta atctcccact
      601 ctccaggctg acttaaataa cctcctgtta cactgtattg gccttctcct tttttagcta
      661 aatttgcaac tataggtcct atattggatt ctgtgtttgt aaattgcata attacatttc
      721 ttatattttt ggccggattg ccttgttgat ccgtaagagt tatattaaat gtatttatcc
      781 caactgaaaa tggtgctatt tcgtttttca aatttacatt atctattgtc gtctgctcag
      841 aaaatgtttt attcccactc acagggtttg atgatgatga ttgttgtgaa ggcgatatgc
      901 taaatacata tgaaccttta gatatatgcc catcatctct agatagggta agccatgaaa
      961 cagtatatac tccaggtgaa agattagatg tatctagtgt gacagctgct tctctattgt
     1021 tttgctcgga aattgcataa tcattattgt ctactctctc attctttgag tttgttacat
     1081 gtatatagct gacttttggt tcaggtcttt ctgaaaataa tattgttact tttgatggta
     1141 acgactgctc attaacttgt tgtattattg aatttgcagc aggagaatat gatataggat
     1201 ttgcatgacc gtatgcatta ttttctaaaa gtaatgttgc aataagaaaa ataataagta
     1261 ttccagcaag agtattcctt gtcagtaaaa aagaagaaga ataattttga cgcatattat
     1321 agatacgtct atacataatt taaattaata agtttcatag ttcattcgtc gaatgaacta
     1381 taaagtataa ttataacatg cataatcttt ctctaatgaa aaataaaata atgttttctg
     1441 ttctcttgtt agcaattgta gcatctatgt catttatgat aattggatct tctataatag
     1501 ttgcttcagc acaacaaact accggtacca tggaacatgg tgaaggtcag actaatgcta
     1561 caattgttag agactctact gcatttcttc tatcaggaga aataattcca gcagaaagtt
     1621 tcatacacct atacgatagt acacctgatg cgatagcgtt gggtcatttg gctgcaaaga
     1681 ttccatgtga tgaggattca aattctacat tgacaatact cacgggtgtg gcaccagact
     1741 ttcaaccagc tgagttagaa ttagttcaaa acttatcaac tccaggtgaa ctatgtttgt
     1801 atcatgcaga cttggaatct acacaaggag gagagataat aacagatata gcaattcaaa
     1861 atccagatga agaagaagat gtaacatttc cagatacaag tactgttgtt ataggcatta
     1921 ataggatcct gcctggtggt gctcaagaac atgcacatgc tggtgaggaa taagaagtat
     1981 atacaaacca aggaacaaaa tagtaaggtt aagaaattct ttcatatcct cttttaacct
     2041 tttttatatc tattgttgac gcatttaacc atcctttgtt cttcttatgg taatctaagc
     2101 aatcaatatg ctctgttctt ttttcttctt gtaaatcagt tatatgaaaa tatttatggg
     2161 tatatatggg attattttaa ttaaataata atgtcattcg tggctatgat atcttaatct
     2221 actactgtgt aatacccatg ttatatttag tttagcaaga tagccataat ccaatccagt
     2281 cttgggttct atctcccact tctgaacctt ctgttaggca atatttgcag gatgataacg
     2341 atctaatagg gtgtcccttc acgagcatag tccaactgaa attatatatt ggttaatcaa
     2401 aggaaaaaca tgcaatctta aaatagtgac ctcagtatta aatgctatga cggctaatat
     2461 cccgagatgg aa
//
LOCUS       DATAAS010000413         1794 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3665410, whole genome shotgun sequence.
ACCESSION   DATAAS010000413 DATAAS010000000
VERSION     DATAAS010000413.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1794)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1794)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1794
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3665410"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            479..>1794
                     /locus_tag="VHF08_06640"
     CDS             479..>1794
                     /locus_tag="VHF08_06640"
                     /inference="COORDINATES: protein motif:HMM:NF018444.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068363.1"
                     /translation="MSLQSYFPHPYMRDKQEKILGEIEQAIKSGFKNIFLEAPAGFGK
                     SPVAIALARYLGSSHICTATKDLQAQYSRDFPFIREVKGKSNFICIIKDEMGLDETCN
                     YGPCLKDNGYDCIYKTKLGDYKVQGEGTKYETVELDRLAQKKYIDKMKSQSRIIQFDW
                     KPCHYYHQKWIAVKSSHTIYNYKYFLSDLFYSNSIQKRQLLVLDEAHTIESEVADFKS
                     FAIFNEGMASFLPKLSLPYEKEYDIETWIVFGTELREKLLIFIDKANTILEKNIEQYP
                     FTEKNLIDAITKEKNLTTVIEDMRSNKDNWIVTNIEKAANNQLRKVLVTPIDVSSYFR
                     DILDKGSISLFMSATILSKDYLCKIGGIKSDQVKFIRVHESNFPLKNRPIYLMNIAWL
                     NAKTMNQSLPAIANAVNNIMTTHKNEKGIIHITSYSQLRFIKENIS"
BASE COUNT          660 a          278 c          298 g          558 t
ORIGIN      
        1 gatgtttgca tgatatatat atcgtcatat tattatttaa acaataataa accagaatgg
       61 ataataatta tatagtttgt ttataaatat ttcaaagaaa gaggacatgg tatttgcaga
      121 ttgtttgact atttaattat acattattat gagaagacga ttccaattta gagcaaaagc
      181 cggtcttgta aaccattatt ataacttaga cttcattgaa gtattactat cgcatttatg
      241 aaatctttga tttgttcaga ataaatcact ccttacacaa tttatatcaa atataacctt
      301 tatcttcttg aatgcatctt ctccaatgtt tggttttcaa tagaattctt aaatacacgc
      361 taaagtatac ctataagacc gcaatgtcag aattgatggc tattaattat tttttcgtaa
      421 ggttcgaatt aataaatgag aacacaaatc ctttcaaagc ggtgttgttt aattagagat
      481 gtcattacaa agttattttc cacatcctta catgagggat aaacaagaaa agatattggg
      541 agaaattgaa caggctatta aatcaggatt caagaacatc tttctggaag cgccggcagg
      601 atttggaaaa agtccagtcg caattgcatt ggctagatat cttgggagct cccacatttg
      661 tactgctacc aaggacttgc aagcacaata ttctagagac tttcctttta taagggaggt
      721 aaaaggaaaa agtaatttta tatgtattat aaaggacgaa atgggtttag acgaaacatg
      781 taattatggt ccttgcctaa aggacaatgg atatgattgc atctacaaaa ctaaactagg
      841 tgattataaa gtacaaggcg aaggtacaaa atatgaaact gttgaactag atcgccttgc
      901 tcagaaaaaa tatattgata agatgaagtc tcaatcaaga attatacaat ttgactggaa
      961 gccatgtcac tattatcatc aaaaatggat cgcggttaag tctagtcata ctatttacaa
     1021 ttacaagtat tttctatctg atctttttta ttcgaacagt atccagaaaa gacaattact
     1081 cgtccttgat gaggcacata ctatagaatc cgaagtggca gattttaaaa gttttgcaat
     1141 atttaatgag ggcatggcta gcttccttcc aaaattaagt cttccctatg aaaaggaata
     1201 tgacatcgaa acttggatcg ttttcggaac tgaattgaga gaaaaacttc ttatttttat
     1261 agacaaagcg aacacaatac tcgaaaaaaa tattgaacaa tatcccttta cagagaaaaa
     1321 tctcattgat gcgataacaa aagagaagaa tttaactact gtaattgaag atatgagaag
     1381 taataaggat aattggattg tgacaaacat agaaaaagca gctaacaacc agttacgaaa
     1441 agtattggtt actcctattg acgtttcgtc ttactttaga gacattctag acaaaggctc
     1501 aatatctctc tttatgagcg cgactatttt gagcaaggac tatttatgta aaatcggagg
     1561 cattaaatcg gatcaggtaa aatttattcg tgtccatgag tcaaatttcc ctctaaaaaa
     1621 tagaccaatt tatctcatga atattgcttg gcttaatgca aaaacaatga atcaaagttt
     1681 accggccata gccaatgctg ttaacaatat catgaccaca cataaaaatg aaaaaggaat
     1741 tattcacatc acatcttact ctcaacttcg atttataaag gagaacatta gcaa
//
LOCUS       DATAAS010000414         3505 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3127765, whole genome shotgun sequence.
ACCESSION   DATAAS010000414 DATAAS010000000
VERSION     DATAAS010000414.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3505
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3127765"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..217
                     /locus_tag="VHF08_06645"
     CDS             <1..217
                     /locus_tag="VHF08_06645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aspartate carbamoyltransferase"
                     /protein_id="HEX2068364.1"
                     /translation="EYEKVKGTYTINSETLAKSKSDVSIMHPMPRMEEISHSIDNTKN
                     AIYFKQAAYGKELRAALLTLILNENIV"
     gene            1272..2699
                     /locus_tag="VHF08_06650"
     CDS             1272..2699
                     /locus_tag="VHF08_06650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEX2068365.1"
                     /translation="MIIIDELQKFDLIVIGSGSGLDVANAATQNGLKVAVIEKDRMGG
                     TCLNRGCIPSKLLIHSADVAEIIKSANIFGIEVDGLSVNFQKIVERVNAITDHSSDQI
                     KNAFKDIENPKLFAKECKFVGEKTILIGDNEKITAEKILIASGTRPEIPKKIEGLEGS
                     SYITSDEALRLKKQPRVITFIGGGYITCELAHFFGSLGTEINIVQLGDVLIPNEDEEI
                     SKKFTEVFSKKYNVYLGYETESVSKWKNNDNGSDDDPTFHIIAKNSTNGNSLELDSDQ
                     LLVAVGRIPNSDILDIEKAGVKVDEKGFIITDEYLETNVKGIFALGDAVGRYQFKHNA
                     NHESQYAFNNILHPNRKVAVDYTAMPHAIFSSPQVAGVGFTEQELKKKNIDYERSVYP
                     YINTGMGEAIEDRDGFVKFLVDGKSRKILGCHIIGSHASILIHEVLVAMRAGDGTIDN
                     ISRTIHIHPALSEVIARAASYDIKR"
     gene            complement(3242..3415)
                     /locus_tag="VHF08_06655"
     CDS             complement(3242..3415)
                     /locus_tag="VHF08_06655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068366.1"
                     /translation="MPRGMKKGLDTQKFDRCVTKVKRKSGKQANPYAVCNATMGDKSK
                     GKGKNSSKGRSKK"
BASE COUNT         1297 a          490 c          603 g         1115 t
ORIGIN      
        1 agaatatgaa aaagtaaagg gtacatatac tatcaatagt gaaactcttg caaagtcaaa
       61 atcagatgtc tctataatgc atccaatgcc caggatggaa gagatctcgc attctattga
      121 taatacaaaa aatgcaatct atttcaaaca ggccgcatat ggtaaggaat tgagggcagc
      181 tcttcttacg ttaatattaa acgaaaacat cgtataaagt aagaactatt aaatggggta
      241 gactaagacg ggatgactta atgtttgcct atcaaatagt gttctagaag ataaagaaaa
      301 aaagacgatc taccatagca tatgcatcaa caacagctaa ctgtcagcct aagatagaag
      361 aagtgaagag agaaataaaa agaaaagatg aattatgtaa ggatgtaagg gaagtatgat
      421 ggtaattaaa attttatatg gagtaaagat aatgaggata aaaaggagag aaataaaata
      481 cattatttac aacaaagctg agataaaata agacaacaaa gatgatgtgt catacatgat
      541 gtccatatct gtatgaaaca taaagtatca tttacattat cttatcaaag atagagaaga
      601 catctaatcg aattatacaa gctaaacggc aaaaaagatc agaagctatg caaaattata
      661 aaaagctgta gactttagtg taggagtata aaacttgtat atgtgtaatt taaaaataca
      721 caaatcatta catgacagct aatttcatat gaagtacaat atcaagttat aatacaccag
      781 tacgccaata tgccacagaa agtgtcaaat gagtattgtt aaagaaagtg ttatcaatca
      841 gcagtaacaa caatccaaaa agtagtttga attaagttat atattcagta tgtataagaa
      901 tgccttagag tagagtatta aatgaatatt tttataatgt gattatatta gtagagttga
      961 atacaatata gtataataat aataagaagg atgcatatgt atcttttaga atgaattgtt
     1021 tatccaaaat gctagcttat tctatctaac attgattggt aaattataca tatatatcat
     1081 aaaatgtaac gatctgatta taaggaacac atctaccatc gtcttccaac tacaattcgt
     1141 tcctatagaa acatataatt tttatcgcca attattggct aaagttcatt tgaggttaat
     1201 taattgaagc ttaacatcat tctttaatat gcactatata atggatgtta tctttataat
     1261 ataatgatga cttgattata atagacgaat tgcagaagtt tgatcttatc gtcattggta
     1321 gcggttctgg gctcgatgtt gctaatgctg caacacagaa tggtcttaag gtagcagtta
     1381 tcgagaagga tagaatgggt ggaacttgtc ttaatagagg ttgcattcca tctaaattac
     1441 ttatacatag tgcagacgtg gctgaaataa tcaagagcgc aaatattttt ggaattgaag
     1501 ttgatgggtt gtcagttaat tttcaaaaaa tagttgagcg agttaatgct ataactgatc
     1561 atagttcaga tcaaattaag aatgccttta aagatataga aaaccctaaa ctctttgcaa
     1621 aagaatgcaa gttcgttgga gaaaaaacaa tcctgattgg agataatgaa aaaataactg
     1681 cagagaaaat attaattgct tctggaacga gacctgaaat tccaaaaaag atagaaggtc
     1741 tagaaggaag cagttacatt actagtgatg aagcattacg tctaaaaaaa caaccacgtg
     1801 ttattacatt tataggtgga ggatatataa catgtgaatt agctcacttt tttggctctc
     1861 ttggaacaga aattaacata gttcagcttg gagatgtgct cattccaaat gaagatgaag
     1921 aaatttcaaa aaaattcaca gaggtatttt ctaaaaagta taatgtgtat ttaggatatg
     1981 aaacagagtc tgtttcaaag tggaaaaata acgacaatgg cagtgatgat gatcctacat
     2041 ttcatatcat agcaaaaaac tctactaatg gaaattcatt agaacttgat tccgaccaac
     2101 ttcttgttgc tgtaggccga attccaaatt cagacatcct tgatattgaa aaagcaggag
     2161 taaaagttga tgaaaaaggt ttcataataa cagatgaata tcttgaaact aatgttaaag
     2221 gaatatttgc acttggagat gcagtgggac gatatcaatt taagcataat gctaatcatg
     2281 aatctcaata tgctttcaac aatatattgc atcctaatag aaaagttgca gtcgattata
     2341 ctgcaatgcc acatgctatc tttagctcac ctcaggttgc tggagtaggt tttacagagc
     2401 aggaactgaa gaagaagaac atagactacg agagatcagt ttatccatat atcaatacag
     2461 gaatgggaga agcaattgaa gatagagatg gttttgtaaa gtttcttgta gatggaaaaa
     2521 gtagaaaaat tcttggctgt catattattg gaagccacgc atctatcctt attcacgaag
     2581 ttttggtagc tatgagagca ggtgatggta ctatcgacaa tatttcaaga actattcata
     2641 tccatccagc actttctgaa gtaatcgcta gggcagcctc ctatgatatt aaaagataat
     2701 ctcgagtgcc ttcactcaat atgattattt atgtcttata attgcaatta attacatata
     2761 ttatatgaaa gaaaattatc tagaaacatt tacagaattt tattgtagaa agtagaataa
     2821 gaaaaaatta tagaattaga aaatattata aatatcctct actctattcg ttagattatt
     2881 gtagtcattt tacttttcat cctgttggcg attgtgctgt tgaagttctt cttgagaatt
     2941 aaatgtcata ccgccacatt cttcacagcg atatggtttg tcagatgatg acatgtaaga
     3001 tatacgtcta taatatttaa tttaaaagtt gagttgttag ttgctaatag gatttcagaa
     3061 acatactatc ggttatacaa ttacttcata tttactgctt ttggttataa tttttctttt
     3121 ctccttctat tttatgttct tctattttca ttctttcaat tctaattgat tctacattat
     3181 ctagtataga aagaatttgc atgtagaaca aagaaaaaga cggtgattga caaaaatgag
     3241 tttatttttt gctcctaccc ttacttgaat tcttaccttt tcctttactt ttatcaccca
     3301 tggttgcatt acatacagca taaggattag cctgcttacc agattttctc ttcaccttcg
     3361 tgacacatct atcaaacttc tgtgtatcta atcctttttt cattcctctg ggcatgttac
     3421 taagtactag aaaatataat taattaaagg ttgaaattgt tatccaaaag tattgaaata
     3481 cttcgactat aatttaccga tggaa
//
LOCUS       DATAAS010000415         2914 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5295878, whole genome shotgun sequence.
ACCESSION   DATAAS010000415 DATAAS010000000
VERSION     DATAAS010000415.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2914)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2914)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2914
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5295878"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..443
                     /locus_tag="VHF08_06660"
     CDS             <1..443
                     /locus_tag="VHF08_06660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEX2068367.1"
                     /translation="ALIDVSGGGMVGTPGTAAKIFDTLAKNRVNIMMISQSPSESSIS
                     MVVRKSDLDKATTTFELNLLGKIIKQLNVNEDVAIIAVVGSGMRGIKGVAAKVFGSVA
                     RRNINVMMIAQGSSELNLAFVVNDNDCEQAVRALHDEFGLANIE"
     gene            614..1438
                     /gene="cobJ"
                     /locus_tag="VHF08_06665"
     CDS             614..1438
                     /gene="cobJ"
                     /locus_tag="VHF08_06665"
                     /EC_number="2.1.1.131"
                     /inference="COORDINATES: protein motif:HMM:TIGR01466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030789 - precorrin-3B
                     C17-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-3B C(17)-methyltransferase"
                     /protein_id="HEX2068368.1"
                     /translation="MSKTGGKLFVVGVGPGHHDHMTYRAKQVIEQSEIIVGYDTYVSL
                     VEDLIVGKEVYRYAMTQEVDRANQAIGFAEQGKIVSLVSSGDPGIYGMIGLIYEILSE
                     KGWNKENGIYVECVPGVSSLNSCSALIGSPLMTDFAVVSMSDLLVPWDIIVKRVEAAA
                     LGDYVTVIYNPASKKRIHQLRDTRDIFLKYRKSETPVAIVKGAYRESQAIVMTTLDRM
                     LEHQDMLGMITTVIVGNSSTFIYKGMMINPRGYRSKYDLVKEVPVTTSSTNNNSNS"
     gene            1664..2710
                     /locus_tag="VHF08_06670"
     CDS             1664..2710
                     /locus_tag="VHF08_06670"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEX2068369.1"
                     /translation="MDVQERLGLIKKDPTEEIVTTDELITLLQTVDSPRHYIGLEISG
                     ELHVGSLILTGFKINDFIKAKVHTTVFLADWHTYINNKLGGDWNKIKDISNYYSEAFK
                     FFCPSTSIIIGSDLYDNTDDYWENFIRFSKQMTLSRTVRSLTIMGRTEKENLDFSQLL
                     YPPMQSVDIKALNLDIVHAGMDQRKIHMLTREIFPRLGWKVPVSVHHHLLPGLSQPSK
                     LGFSEDSSEDLKISSKMSKSKPSSGIMIHDTEQTINEKIHKAFCPPDVVEGNPVLELV
                     KYIIFHQFSEFVIERPSKYGGNVSYNNYKDVQYDFIKNKIHPIDLKNATAIYINKIIE
                     PVRNHFKDRKPKFD"
BASE COUNT         1011 a          443 c          548 g          912 t
ORIGIN      
        1 cagctttgat tgatgttagt ggaggtggaa tggtggggac gccaggaacc gctgcaaaga
       61 tcttcgatac acttgctaaa aatagagtaa atattatgat gatctctcaa agtccttcag
      121 aatctagcat atcaatggta gtaaggaaaa gcgacctcga taaagcaaca accacatttg
      181 agttaaattt acttggaaag atcataaaac agctaaatgt aaatgaagac gttgcgataa
      241 ttgctgttgt agggtcaggc atgcgtggaa taaagggtgt agcagcaaaa gtatttggtt
      301 ctgttgcaag aagaaatatc aacgttatga tgattgctca gggatcctct gaactaaatt
      361 tggcttttgt agttaatgat aatgattgcg agcaggcagt tagagcatta cacgatgagt
      421 ttggacttgc caatatagaa tagaatatat aatttacaat tgattgtttt attgttataa
      481 aatattatta tgatatagtt cattatacag tcgtgctaac cgccaagtaa ctgtctttta
      541 ataagagtgt cgatgatgta cagccttttg ttatgaaaaa agataaattc tatcttatcc
      601 ccagtcagat agaatgagta aaactggcgg taaattattt gttgttggtg ttggtcctgg
      661 tcatcatgac catatgacat atagagcaaa acaagtaata gaacaaagtg aaattattgt
      721 tggttatgat acatatgtat ctttagttga ggatttaatt gttggtaaag aagtgtatcg
      781 ttatgccatg acacaggagg tagatagagc aaatcaagcg ataggttttg cagaacaggg
      841 caaaatcgta tcgctagtat catctggaga tcctggtata tatggaatga taggcttgat
      901 ctatgagatt ctttcggaga aaggatggaa taaagaaaac ggaatctatg tggaatgtgt
      961 gccaggagtt tcgtcattga attcatgctc cgctctgatt ggttctccat taatgactga
     1021 ttttgctgta gttagtatga gcgatttact tgtgccatgg gacataattg taaagcgggt
     1081 agaagcggct gccttaggag attacgttac tgttatttac aatccggcta gcaaaaagcg
     1141 catacatcaa ctaagagata ctagagacat ttttctaaaa tacagaaaat cagaaactcc
     1201 tgtagcaata gttaagggag catatagaga aagccaagca atagttatga ccactctaga
     1261 cagaatgcta gaacatcaag atatgcttgg tatgattaca acagtaatag taggtaattc
     1321 atctaccttt atttacaaag gtatgatgat aaacccgaga ggatatagat caaaatatga
     1381 tctcgtcaaa gaagttcctg tcactacgag ttctactaat aacaacagca attcctgact
     1441 tttgttattt ttgcaataat tctataattg caattggaaa tatctgacca aataaaagat
     1501 gcaatcaaga agaattattc tatggctata atatagaata ttatatgaga tatttcttta
     1561 gaatgatttg agtttacatt aaagatattt atttgtttat gggagtttag ccgtctaatt
     1621 gaatgaaaat attaataggc attactcacc gcccacttta taaatggacg tacaagaacg
     1681 tttaggtctt attaaaaaag atcctactga agaaattgtt actacggatg agttaataac
     1741 tctgttacaa acagttgact caccaagaca ttatattggt ctagaaattt ctggagagct
     1801 ccatgttgga agtcttatat taactggttt taaaattaat gactttatta aagccaaggt
     1861 tcacacaact gtttttttgg ctgattggca tacctacata aacaataagc taggtggaga
     1921 ctggaataaa attaaagata tctcaaatta ttattctgag gcattcaaat ttttctgtcc
     1981 tagcacaagt ataataatcg gcagtgacct ttatgataat acagatgact attgggaaaa
     2041 ttttatacgt tttagcaaac aaatgacttt atctagaaca gtacgctctt tgacgatcat
     2101 gggtagaact gagaaagaaa atcttgattt ttctcagtta ctatatccgc ccatgcaatc
     2161 tgttgacatc aaggcactca acctggacat agtccacgca ggtatggatc aaagaaaaat
     2221 tcacatgttg acaagggaaa tatttccaag gttaggatgg aaggttccag tttccgtaca
     2281 ccatcatttg ctgcccgggc tttctcaacc ttccaaacta ggattttcag aagattcttc
     2341 tgaagacttg aaaatatcaa gtaaaatgag caagagcaaa ccctcaagtg ggattatgat
     2401 tcatgatacc gagcaaacta ttaacgaaaa gatccacaag gctttttgtc ctcctgatgt
     2461 tgtagaaggt aatccagtcc ttgagctagt caaatatatc atctttcatc aattttctga
     2521 gtttgttatt gagcgtcctt caaagtacgg tggaaacgtt tcatacaata attacaaaga
     2581 cgttcaatat gacttcatta aaaataaaat acatccaatt gatctgaaaa atgctacagc
     2641 tatatacata aataaaataa ttgaacctgt tcgtaatcac tttaaggata gaaaaccaaa
     2701 atttgattaa atattcttaa gaacctaaaa atcaaacaac attctgcaat tatgacatta
     2761 ccgctatatt attattatag ataatcatac aattacttgt tacttcttgt ttaataatca
     2821 ttaggttatt taattgcaaa gtttatgaaa tatatatata catcaataca ttttgtatac
     2881 agaattgatg gtataggctt aaccttgaaa gacc
//
LOCUS       DATAAS010000416         2320 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4216537, whole genome shotgun sequence.
ACCESSION   DATAAS010000416 DATAAS010000000
VERSION     DATAAS010000416.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4216537"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..628)
                     /locus_tag="VHF08_06675"
     CDS             complement(<1..628)
                     /locus_tag="VHF08_06675"
                     /inference="COORDINATES: protein motif:HMM:NF021098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YsnF/AvaK domain-containing protein"
                     /protein_id="HEX2068370.1"
                     /translation="MSRDKHYNFQEEQFYFNKSDVTRQSGQSHLSRLHDKLDKYKQDK
                     THKNKEDAHVKISGDENSAKLTRINRDESSVISAIPGEQEEGSKLNEARIPVVEEKLE
                     INKVQSVVDLTVTKESVTEITTVDVPIAYEEITIRRRPVSEATTREQTGEGPVRTNTA
                     ITIPLMKEEIEISKQPYVKEEVVIKKKPVVETRTVTEEVKSEKVKVRRG"
     gene            1547..2077
                     /locus_tag="VHF08_06680"
     CDS             1547..2077
                     /locus_tag="VHF08_06680"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068371.1"
                     /translation="MQGNKKSEKENNIHEPNFATKIPIIEEKFSIGKRTVSEDVKIEK
                     RWVTKTKILKVPITYEEIYLNDKKIKLSEYTDIKTSSSEDGIPTIKTIKQESKSRQIS
                     TRGELVPLSNKSKENEKIIPLWGEQIIINKKMVRLEDLIITKRKMSENKKIDIDTKKE
                     KVTIRYPDGSTKQLTT"
BASE COUNT          831 a          347 c          348 g          794 t
ORIGIN      
        1 tgcctcttct aaccttaact ttttcgctct ttacttcttc agttaccgta cgagtttcta
       61 caactggttt ctttttaata acaacttctt ccttgacata tggctgcttt gaaatttcta
      121 tttcttcttt cattaacgga attgtgatag ctgtatttgt tcgaactgga ccttctcctg
      181 tttgttctct agtagtagct tcacttacag gtcttcttcg gatagttatt tcttcatatg
      241 caatcggtac atcaaccgtt gtaatttcag taacagattc ttttgttaca gtaagatcta
      301 caacagactg aactttattt atttctaatt tttcctctac tacaggaatg cgcgcttcat
      361 ttaattttga accctcctct tgttcaccag gaattgctga tatcacactg ctttcatctc
      421 tatttattct ggtgagcttg gcagaatttt cgtcgcctga aattttaacg tgtgcatctt
      481 ctttattctt atgggttttg tcttgtttat acttatctaa tttgtcatgt agtctagaaa
      541 gatgactctg cccggattgt ctagtgacat cggatttatt aaaataaaat tgttcttctt
      601 gaaaattata gtgtttatct ctgctcatac tctctatctt tatcataata tggggtttat
      661 tattttttaa agtgagctat ttattataat caaataaaac tcatagaaat gatttctaat
      721 ttctatgccc atttcaattt actctaaagc atgatttaga acagtaatcc aaaatgtgtt
      781 aagtgaatta ataggaaata aaatatacac atattaattg atgagatcca ttacaaatag
      841 gcaataatat cgatatcaaa aatgcagact aaatgatgtt agatttattg gtaataaaat
      901 acctgtgcac attcttgtta catgcgaaga aaggtaaatc tttatttaca aaataaaata
      961 aatgcaaacc aaaagatgca attaagtagt cattgcattg ataggataaa aacgctatta
     1021 ataatcttat gcttggtaat gcagaattac atttggagtc cagaatatga aatggaaaac
     1081 aaatcttttt gtttaatagc aaatttaggt gatcgtaata tcagttaaaa taatctaaat
     1141 tagtttgaga aaccagccta aagagatgct aatgttatag cgtgaggtct agacgaaaat
     1201 ggaagttaat taggagaaga tattcttaac acagattcta caagcttttc tacatcttat
     1261 tctatttcct tttaaactct tgttattgtt agctatttgt cattgtagtc agctaactcc
     1321 gtcacttttt cataaattgc gacaataaga aactacttgc atatatcatt taccatttta
     1381 gtatttactt tatacaacct aaattcatat aattgttgtg aaagtaggaa ttttttatta
     1441 ttaccagtat gattatagaa gtatattatt cttaatctcc gaaaaatacc tataatatta
     1501 tttgtctagg attataacct atatattaca ataatgggag ataatcatgc aaggtaataa
     1561 aaagtctgag aaagaaaata acattcacga acctaacttt gccaccaaaa ttcccatcat
     1621 cgaggagaaa ttctcaattg gcaagagaac tgttagcgaa gacgttaaaa tagaaaaaag
     1681 atgggttacc aaaaccaaaa tccttaaggt gcctataaca tatgaagaaa tttatcttaa
     1741 tgataagaaa ataaaattat ccgaatacac ggatataaaa acgtcttcat cagaagatgg
     1801 cattccaact atcaaaacca ttaagcaaga gtcaaaatca cgacaaattt caactagggg
     1861 agaattagtt ccgttatcta ataaaagcaa ggaaaatgaa aaaatcattc ccctatgggg
     1921 ggagcagata ataattaata aaaaaatggt cagactagaa gatctcataa ttacaaagag
     1981 aaagatgtct gaaaacaaaa aaattgacat agatactaaa aaagagaagg taaccataag
     2041 atatcctgat ggaagtacga aacaattaac aacataggta ttattattat attattggtc
     2101 ttgttctatc aacaaaacaa tattttgaaa ggatactcat tagtttatta gcgaaataat
     2161 tgatcctttg gaaataaaga aagtttatca agtattaaat tttatgtatt atatagttat
     2221 tctaccatgg aaagtaatac agatactaat acggatagta gtaatataaa ctgggacgat
     2281 gtaataaaga aggtggcaag aggtataaat gatacagatc
//
LOCUS       DATAAS010000417         1522 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_991777, whole genome shotgun sequence.
ACCESSION   DATAAS010000417 DATAAS010000000
VERSION     DATAAS010000417.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1522)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1522)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1522
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_991777"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            508..684
                     /locus_tag="VHF08_06685"
     CDS             508..684
                     /locus_tag="VHF08_06685"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068372.1"
                     /translation="MDLFNDLVVPILKAAHEYPHLIMMLKLQPLSPQPSITTSLHLGT
                     IPNTALLRGGESYS"
     gene            833..1015
                     /locus_tag="VHF08_06690"
     CDS             833..1015
                     /locus_tag="VHF08_06690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068373.1"
                     /translation="MKSNNTISMGLLDKLRRKKDQTVEKVKDQTTPQSTHSTNAPPPP
                     GKKIKGYTSEGKPIYE"
BASE COUNT          488 a          308 c          249 g          477 t
ORIGIN      
        1 gcttattttc ttcatgaatg agttccaggt cggatatttt tcaaaatctg ttaagacatg
       61 ccaaacttaa cttggtgaaa catcgatttc aatttcagta atgatctcct ttctgtgaaa
      121 atagaaaggc catcagatct attatggctt ggaaactatc taggacgtta gagcgtccaa
      181 cagcagcagc ttttattcca tctacaccca gatcctaacg atgttactta atttttacga
      241 gaaggattat cgacaacaaa agcacgacga taataagaag aaagtatgac ccaagccact
      301 tttacaggtg tagggaggta attactgtag accgataacc aggcaaaggc gtttgtgata
      361 tataaaataa tcaaattgtg aatctcctcc ttactacaac aaagtgattg taaccattcg
      421 cataggcaaa aaagagcttt ttttatttga ctgactgaac gataaggtac tactcttatc
      481 gatttttttt cattataaac tatcatattg gatctcttta atgacctcgt tgtcccaatt
      541 ctcaaagcgg cgcatgaata tccacatctc atcatgatgc tgaagctgca gccgctgtcg
      601 ccacaaccat ctataacaac ttcgcttcat cttggcacaa ttccgaatac tgcattatta
      661 agaggtgggg aatcatattc ttaatttatt gatcagaatg caaagttaat ccgattatac
      721 gtttgtgtca attcaccgtc gtgcagactt ttagttgatt ttcttcattt tattaccttt
      781 tagtctaaaa actgtatttt ttataccttc ttccttgtaa tgcttttatc tcttgaaatc
      841 gaataacaca attagtatgg gccttctaga taagctacgc cgcaagaaag atcaaactgt
      901 ggagaaagtc aaagaccaaa caacgcctca gtctacccat tctactaatg cgccaccgcc
      961 tcctggcaaa aagatcaaag gttatacttc tgaaggaaaa ccaatctatg aataaaaacc
     1021 acagcctttt ttttcaaggt tgttattctt gttctttttc taattgatga tggcgagaac
     1081 tagcctcata aaaacaagtc cgacatagga tagcgctatt atatctatag atcttcttat
     1141 tttccgagct aaagaatgaa aattttgaca attcacgaga acaattgtca caacacttct
     1201 tcattgtaag aaataaggct cagaatatta tttagcctct gtgaaattaa gctccatatt
     1261 tactctttga tattgttatc aaaacagcat atctacgtcg gataacctga gatagctaga
     1321 tataactagc aagcaaactt taaagctaat tatatcattc tagctattta tgaaagagat
     1381 aaaccctcaa gatgaaatca agggttcaaa tccctctctc ggcgctttcc ttcaataacg
     1441 tggtatacat agcatatgcc taactctcac atcgacgccg ggagcacctt gtctgcttgt
     1501 aagtaaagga tatcaagctt gg
//
LOCUS       DATAAS010000418         1962 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2063307, whole genome shotgun sequence.
ACCESSION   DATAAS010000418 DATAAS010000000
VERSION     DATAAS010000418.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1962)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1962)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1962
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2063307"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            1274..>1962
                     /locus_tag="VHF08_06695"
     CDS             1274..>1962
                     /locus_tag="VHF08_06695"
                     /inference="COORDINATES: protein motif:HMM:NF019352.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEX2068374.1"
                     /translation="MKNNLNPYFFSILTIAILAVVFATFFYQILFVLPVFAQTEVQNT
                     TEDGVLLQRNHHEIEIVAEELPDRQIAYRIIKFITTDINNRTIDMTPTYSSEPTIPGP
                     TLIFQEGDTVRVTLFNNIGWGMISIHPHGIHYNITSDGTLAAVNGVSDQGATPGNPIT
                     YQWAAGSGTVGTWPYHDHTLGITPSGKDVEGLEKVGLFGTLIVNPANGKVNALINGSP
                     KEIDLQDIKKD"
BASE COUNT          703 a          313 c          321 g          625 t
ORIGIN      
        1 atcctcgttc catatcgcca aaagaagaca aattaaaaac tcctctctag taatggttgg
       61 aatattagca gcagtaacaa tgctctcagc agcgaagtcg tagtacctaa taggaagcaa
      121 atatagaaac tatgagattc attttcagaa gtaaagcagt gaacaaatgt agtgaccttt
      181 caacctatac cgctgaaagc acaatacagc atttagttaa aagctaagaa atatcagcag
      241 ttcttattct gtaatctata tttttttctt cataaaaaag aagatttgca tagaattaga
      301 taaaaattct ctaacagcag cagtacatat cctgtcagat gttgatagtt caaagaatct
      361 tgcaaattaa atgcgcagat tcataaatag atctttgcct tagattattc cttgccaagc
      421 tttccaaaaa aaccaaaaaa gttagttcaa ggtgctcatc aacttctaga ttaagatgat
      481 gttttctaac atcatggaaa atatttaaga aaaaattgtt gatattacct ttaatacttt
      541 tatgttatat aagaaagtta attctagtct atgctgcatt caaaaaaaga aacatcagta
      601 cgtctattgg tctatcataa gaacaattta actttgagtg agtgttatct tgcagtgtaa
      661 caatagttac tagggtttct tctttagact ctctttttct actatcgaca agtagcattc
      721 attacatata tttgttgaaa atatgaaatt tagtgaataa aacctgactc taccgcaaaa
      781 cttacatgta cgcacaatta taatttaact aactctctga taaacctaag cagtactata
      841 attagaattt cgtattttcg cttctgcttg ctcctgtgat ttagccctat gattttatgt
      901 cctattcctg aggatgttca gcttcgtata catatgtatt gttatttatc taatcaactg
      961 gatcgtagca tatattagga ttagtttgtc ttgcctatca aaatttctta tacgacagcc
     1021 tctatacatc ttaagcatat agaaaggtgg tataggactg gtacattatc aacatttaag
     1081 catgaatact tatgttggtt ctttaaagtt acatttagaa gaacatctaa ttattatagt
     1141 caatataaaa atataagaaa attaaagaaa atactacata tatatatcga ttagaaaaat
     1201 gtagaactgc taataatgat gacaacagaa agaaacattc gtttgttttt tatattatta
     1261 tgaagggatt acaatgaaaa ataatttaaa tccttacttt ttttcaatcc taacgatagc
     1321 aatactggct gtcgtctttg ctactttttt ttatcaaatt ttatttgtat tgcctgtttt
     1381 tgctcaaaca gaggttcaaa atacaacaga agatggtgtg ctattacaaa gaaatcatca
     1441 tgaaatagag atagtggcag aagaattacc tgatagacaa attgcataca gaattattaa
     1501 atttattaca acagacatta acaatcgcac aatagatatg acaccaacat atagcagtga
     1561 gccaacaata cctggaccga cactcatctt tcaggaagga gatactgtaa gggtcacttt
     1621 gttcaataat atcggatggg ggatgattag tattcatcca catggcatcc attacaatat
     1681 aactagtgat ggaacattag ccgcagtaaa tggagtaagc gatcagggtg ctactcctgg
     1741 aaatcccata acataccaat gggctgcagg aagtggaaca gtaggaacat ggccatatca
     1801 tgatcacaca ctaggtataa ccccatctgg taaagatgta gagggattgg agaaagttgg
     1861 cctgtttgga actctaatag ttaatcctgc aaatggaaag gtaaatgctt tgataaatgg
     1921 atctcctaag gagatagatt tgcaagatat aaagaaagat tt
//
LOCUS       DATAAS010000419         2578 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2063747, whole genome shotgun sequence.
ACCESSION   DATAAS010000419 DATAAS010000000
VERSION     DATAAS010000419.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2578
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2063747"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..479
                     /locus_tag="VHF08_06700"
     CDS             <1..479
                     /locus_tag="VHF08_06700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068375.1"
                     /translation="GIRYWSINALAVADILFLTLKMDELDIEGTKTIAQEIYSSFTRH
                     GTKSYLLLNRVAGYCTPHGMSLKNESIEEAASRNSVTNIQNVGSSTIQMPKEQDQSDI
                     INMLSKEIKMDVISSIPCYCDIQFNKREYLTVLEYPHHPFAEKINSLIENLKAAKS"
     gene            545..2092
                     /locus_tag="VHF08_06705"
     CDS             545..2092
                     /locus_tag="VHF08_06705"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase domain-containing protein"
                     /protein_id="HEX2068376.1"
                     /translation="MQIPGQSNLITKETQIPDSLLLLYGPAGAGKSMYCKQFFVDCLM
                     NGDYCIYISSSLTDRQYRSLFADVDESKLLQGSHFLNPYLQKALAGHSTSSSLSTSVS
                     ENKLSLTLEIIHDLIKKVRNGEDDNYEKKQNKVNEHSLDTTKKICLVVDSLTHLLAIF
                     NQEDVLQFVNALSFLLKEVEATAIFVLTTSSSPSTSSTSTSTTNDNFTNRLGSIFDGI
                     LEMKFEDDKSGSLTRSIRLLSIRGIHHIPAWITFKIDHNGKITFGSDQLSEFTCALCK
                     APIRDTPVIYSELTFHSHHVDLYKKLLGVYGSNISEFGLPEGVISANFFFIDIVGLSD
                     PSLSVRKQIEKIERLNNLIYSCDAFKKITEKKIILPTGDGMAIGFMLNPELPLQLSIQ
                     LHKELDRYNHSKKISEEDILGVRIGLATGPVFIVSDINNNQNIWGPGIILARRVMDLG
                     DSGHILIADILAEQLIALKDEYRVMINPIGNYRIKHGQTIKLYSAYSQDFGNPDPPVK
                     FQVESVN"
     gene            2207..>2578
                     /locus_tag="VHF08_06710"
     CDS             2207..>2578
                     /locus_tag="VHF08_06710"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068377.1"
                     /translation="MVDKKKSSNRRTNDGSYFASSRRKNKKYMMIIIPIVAAIIAIAV
                     ISAIMYSTQQSSNNNNNNYGPVGSAHEHAAFAIKINGQQIDFSQPKYQVQSRLIHVEG
                     GDGTTLHRHATGVPFGEFIKSV"
BASE COUNT          915 a          417 c          456 g          790 t
ORIGIN      
        1 cgggtataag gtattggtca ataaacgcac ttgccgttgc agacatactc tttctaactt
       61 tgaaaatgga tgaacttgat attgagggta caaaaactat agcccaagag atctatagtt
      121 cttttacaag gcatggcacc aagtcatatc ttctgctaaa tagagtcgct ggctattgta
      181 ccccacatgg tatgagccta aaaaatgagt ctatagaaga agcagcaagc agaaattctg
      241 tgacaaatat ccagaatgta ggttcgtcga caatacaaat gccaaaagaa caagatcaat
      301 cagatattat caatatgctt tctaaagaga taaaaatgga tgttatttct tctattcctt
      361 gttattgtga tattcaattc aataaaaggg aatatctaac tgttcttgag tatccacatc
      421 acccttttgc tgaaaaaatt aatagcctca ttgaaaattt aaaagcagca aaaagctaga
      481 gtatttgata agtaaaataa aataatatat acaatgatga tagtatcaat cttaatctcc
      541 gaaaatgcag attccaggac aatctaattt aataactaag gaaactcaaa tacctgacag
      601 tctgctactt ctttatggtc ctgctggagc aggaaaaagt atgtattgca aacagttttt
      661 tgtagactgt ctgatgaatg gagattattg tatctatata agctcaagtt taactgatag
      721 acagtataga agtttatttg ctgatgttga cgaatcgaag ctacttcaag gctcacattt
      781 tttaaatcca tatcttcaaa aagcattggc tggacattct acttcttctt cattatctac
      841 ttccgtttct gagaataaat tatcacttac attggaaata atacatgatc ttataaagaa
      901 agtaagaaat ggtgaggatg acaactacga aaaaaaacaa aataaggtta atgaacattc
      961 attggatact actaaaaaga tatgtcttgt tgttgattcc ttgacacatt tattggccat
     1021 cttcaatcaa gaagatgtat tacaattcgt taatgcttta tctttccttt taaaagaagt
     1081 tgaagcaaca gcaatttttg tattgacaac ttcatcatcg ccatcgacat catcaacatc
     1141 aacatcaaca acaaatgata atttcactaa ccgtttgggt tctatctttg atggcattct
     1201 agaaatgaaa ttcgaggatg ataaaagtgg ttctcttact cgaagtatta gattgctttc
     1261 aataaggggg atacatcata ttcctgcctg gattaccttc aaaatagacc acaatggcaa
     1321 aattacattt ggtagtgacc aattatcaga attcacctgt gctctgtgta aagctcccat
     1381 ccgagatacg cctgtaattt attcagaatt gacttttcat agtcatcatg ttgatttgta
     1441 caagaaactt ttaggagtct acggttccaa tatatcagag tttggactgc cagagggagt
     1501 cataagtgct aattttttct ttatagatat agtggggctg tcagatcctt cactgtctgt
     1561 tcgtaaacag atagaaaaga tcgagcgact caacaacctg atctattctt gcgatgcttt
     1621 caagaagatc acagagaaaa aaattatttt accaacaggt gacggaatgg ctataggatt
     1681 catgttaaat cctgaattac cgctacaact tagtatacaa ttacataaag aactcgacag
     1741 atataatcat agcaaaaaga taagcgagga agatatactt ggggtacgaa ttggattggc
     1801 tacaggtcca gtttttatag taagtgatat aaacaataac caaaacatat ggggaccggg
     1861 tattatactt gctcgtcgag ttatggatct aggagatagc gggcatatat tgattgcaga
     1921 tattcttgct gaacaattga ttgctctcaa ggatgaatat agagtaatga taaatccgat
     1981 tggtaattat cgaattaaac atggacagac gattaaattg tactctgcat attcacaaga
     2041 ttttggaaat cctgatccac ctgtaaaatt tcaagttgaa tctgttaatt aatagacgaa
     2101 tagctaatat gtatatattc atgtgtatat aaatatatat atatagatat aattactttc
     2161 tctttaaatt aagcctaaaa taatggatat gtataaatga taaacaatgg ttgataaaaa
     2221 gaaaagcagt aacagaagaa ctaatgacgg cagctacttt gcaagcagtc gtcgtaagaa
     2281 taaaaaatat atgatgatta taattcctat tgtagcagca attatagcaa tagcggtaat
     2341 ttctgctatt atgtattcaa cacagcagtc tagcaacaac aacaacaaca attatggtcc
     2401 agttggttcg gctcatgaac acgcagcttt tgcaataaaa atcaatggac aacagattga
     2461 ttttagtcaa ccaaaatacc aagtacaatc taggttgata catgtcgagg ggggtgatgg
     2521 aaccacatta cataggcatg caacaggtgt tccatttggc gagtttataa aaagtgtc
//
LOCUS       DATAAS010000420         2806 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_993408, whole genome shotgun sequence.
ACCESSION   DATAAS010000420 DATAAS010000000
VERSION     DATAAS010000420.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2806)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2806)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2806
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_993408"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(465..1061)
                     /locus_tag="VHF08_06715"
     CDS             complement(465..1061)
                     /locus_tag="VHF08_06715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068378.1"
                     /translation="MFLLILLDSHYSYHDNSSDYMAYGHIAGNITSGSNSSNSKIQEW
                     VHERDGIKIQFTYIPDRPIIDTFTELKFSVLNLTSGDHIKDFLARVVVTNGQRIFTFE
                     NITVADGDFSVKYLFPDDGTHQVVTRITTKDSINLLSSFNVFVPHQQPPTLLNPFPSS
                     SRSSENNDDNSQKIIATALVIGLFSGIAVVTIVLVRKK"
     gene            complement(1773..2201)
                     /locus_tag="VHF08_06720"
     CDS             complement(1773..2201)
                     /locus_tag="VHF08_06720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068379.1"
                     /translation="MSNKNKNENNNNNLRKVITKMMTVDKGVDEVFDFFENIKNMEIG
                     GAIKSVTKGNDGWWTLEHIVAGKSKLKQISVREFGILDHQFIGGELEWDVHIRIISNQ
                     KGSTTTWTFIRPDGLTEEQFEEQLKGFDKEIDRWKKSLQN"
     gene            2285..>2806
                     /locus_tag="VHF08_06725"
     CDS             2285..>2806
                     /locus_tag="VHF08_06725"
                     /inference="COORDINATES: protein motif:HMM:NF014080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2068380.1"
                     /translation="MIQELTQLGLTNGEARVYLSLLKIGSSKVGPIVRDSHVSYSKIY
                     DVLERLSMKGLVSHVMIDDVKYFNAIEPYRLQDYIQRKEEQLNIQKEIVDQIVPSLIK
                     IANNNRRRNSAEIFVGDRGLRSAYEILLRDTSANEILRYFYPYNEYHDIASPFYSRLY
                     QFQKSKKLDERGIS"
BASE COUNT          957 a          445 c          434 g          970 t
ORIGIN      
        1 aatttatata aagatttcaa cataatgaca atatctacat caagaccgat taactgcaac
       61 gcttcaaatc gtctgagaca tcaagagctt ttgattacaa ataaaagatt attagttaca
      121 aaagctgtta ctaatgacgt ggaaacaata tcccaaatat aatttatatt ttgatacctt
      181 gaattcacgg gttattggtg cttttcattt gagagaatct ttcagataaa aaagatattc
      241 aagattatgt gtgaataact gtttgttaag aaagctttag gataaatttt attataaagt
      301 accattattt tgtttgtatt aatacccaca aaagcttatt ctttaacctg attgtaatcg
      361 tttaaattgc atctactact agtatttcaa ttcatagtta aatcccagtt gtatctatag
      421 agttcatttt cggtctgctc agaactgaca gattaaatgt ttttttactt ctttcttact
      481 aatactatag ttactactgc tattccacta aaaaggccta ttactaaagc agtagctatt
      541 atcttttgac tattgtcatc attattttct gatgaccggg aggaagaagg aaaaggattc
      601 aacagagtag ggggttgttg atgtggaaca aatacattaa atgatgatag aagattaatt
      661 gaatcctttg tagttattct agttacaact tgatgtgtgc catcatctgg aaacaggtat
      721 tttacagaga agtcaccatc cgcaactgtg atattttcaa atgtaaatat tctttgaccg
      781 tttgtgacta ctactcttgc caaaaagtct tttatgtggt caccactggt tagattcagt
      841 acgctgaatt ttagctctgt aaaagtatca attatgggcc tatctggtat atacgtaaat
      901 tgaattttaa tgccatccct ttcgtgtacc cattcttgga ttttgctgtt gctactatta
      961 cttccgctgg taatattgcc ggctatatgc ccataagcca tatagtcact gctattatca
     1021 tgataggaat aatgagaatc taataaaatt agtaggaaca tcaaggtaga gaaaagcata
     1081 gataagaaca cgatagtcat caaagaactt gataattgag ataatttaaa gtattgaata
     1141 gatatatgct atgatgaact tcaatcttta catatgatga tatatatttt gtggctctat
     1201 agcaatttgg ttaatccata atctgacctg tagattgatt ttatttatca taactcattt
     1261 aaagttgtct cactctttcc tataacggat aatgagtaat caaccaaaag aagaacaaga
     1321 agaattgcag gaatcggaaa ttgaagaaga attagaagaa gaaaaaccac ctgcaaatta
     1381 atattatttt tgagagaaag aaatagacaa attggattat gcacatccct atatgatact
     1441 tagaggttat gatgtcttcg acctgtacaa ttggttatcg tctttggcgt ttttctatta
     1501 tttatctttc ttccaattgt catactattt atcatcctat attattttgc attaaggaca
     1561 ataggacaat cgaaggtcag tcaagaataa aagctgcagc cacgatacta aaatagtgta
     1621 tttttataag ctggctacaa ataatagggt caaattagtc ttacatcctg tctaaccgta
     1681 catttcacat attcccagtt aaataaatat aatattagta ttaaaatcct ttatagatag
     1741 aaaattgtgc taagagtatg ctttgatttc cattaatttt gtaaagactt cttccatcga
     1801 tctatctcct tatcaaatcc cttcagttgc tcttcaaact gttcttctgt tagaccatct
     1861 ggtcttatga acgtccaagt agtagttgag cccttctggt ttgaaattat cctgatatga
     1921 acatcccact caagttcacc accaataaat tgatgatcca aaattccaaa ttcacgaact
     1981 gatatctgct ttagcttaga ctttcctgca acaatatgtt ctaacgtcca ccagccatcg
     2041 tttccttttg ttactgattt tattgcacct ccaatttcca tattctttat gttctcaaaa
     2101 aaatcaaaca cttcatctac tcctttgtcc actgtcatca ttttagtgat aacttttctc
     2161 aaattgttgt tattattttc atttttattt ttatttgaca tattaccttt attacattaa
     2221 aagagaaagt acataaatct catttacccc ttaaggggta catagtaata agatgaaatg
     2281 agatatgata caagaactta ctcaattagg ccttacaaat ggagaagcaa gggtatatct
     2341 ttcattattg aaaataggtt catcaaaagt cggacctata gttagagatt cccatgtttc
     2401 ttactctaag atatacgatg ttttagaaag actgagcatg aagggattag taagtcatgt
     2461 catgattgat gatgtaaaat atttcaatgc tattgaacca tatagattac aagattatat
     2521 acagagaaaa gaggagcagc tgaatataca aaaggaaata gtagatcaaa tagtgccatc
     2581 acttatcaaa atagctaata ataacagaag aagaaacagt gcagagatat ttgttggtga
     2641 tagaggctta agaagtgctt atgaaatttt attaagagat acttctgcaa atgaaatttt
     2701 acgttatttt tatccttaca atgagtatca tgatatagcc agcccattct attctagatt
     2761 atatcagttt caaaaatcaa aaaaacttga tgaaagagga ataagc
//
LOCUS       DATAAS010000421         1858 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_993927, whole genome shotgun sequence.
ACCESSION   DATAAS010000421 DATAAS010000000
VERSION     DATAAS010000421.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1858)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1858)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1858
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_993927"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(595..>1858)
                     /locus_tag="VHF08_06730"
     CDS             complement(595..>1858)
                     /locus_tag="VHF08_06730"
                     /inference="COORDINATES: protein motif:HMM:NF012956.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030246 - carbohydrate binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="discoidin domain-containing protein"
                     /protein_id="HEX2068381.1"
                     /translation="NATATGPGGVNDYSTWQFTYTEDYQLIQEGVNELTSKLSCLSNP
                     ANVARYYSVNVIGVVANNQTLQPIQTANDTITAANNQTLQPIQTANKTAPLLYPMPSV
                     TDNQSKTMTKTITISETGIANTNPITMTIADANTCNKNLIISDIISFGDDDEGHDAIE
                     TNVLDNNLNTRWSTETVGSWIQTDLGVNNVICSLDIAWYKGNTRSYNFIISLSTDGTT
                     YTNVYEGISSGKTLSSERYNFKENTARYVKITINGNNEDGNENWGAITEIDVNGSTET
                     DKKVSSPNTVTLSIRGTYEHNSSYFPLSHEEVELDPSKLEGSIAIYNSSTNEMIEEYD
                     LAPIDVRVTDLFKTLSITTSLDHPIITGSVNATLRFMSPIDFQNGGNYSSNTTTTNDG
                     NLLIAKVDNKIYDTKRTAIGRIVIDPSG"
BASE COUNT          538 a          315 c          312 g          693 t
ORIGIN      
        1 gcttattcaa gaaggagtaa atgaactaac ctctaaatta tcatgtctta gtaatcctgc
       61 gaatgtcaca aaatattata gtgtaaatgt cacaggcaca tcggcgacac aatcaccggg
      121 cactagtata gctccttcta ttcttcctac accctgagga ttttgaagag tcagaaaata
      181 gcattagaaa attgttggat gcttctaccg ttttaatgga tgaaagaaga aaagtaataa
      241 actaaacaat ccatatttct ctccacctta tttgctctag tttagcatat tatcttgatt
      301 tcatctattg gatctatagt ttaacatcaa aatatacaca taatttagtt taaaaagcaa
      361 atacttctat agtcttttaa tagtgtttta tgccctatat atacaactct ggtcatttta
      421 taaataccta accataagta aagcattttt attttaatga ctataaaata ccgtgtgcat
      481 tttgggtctg ttggcataat acgggttttt atgactaata ttgagaaata gtaatacatt
      541 gcttacaaga gctaaatatc taagcaaagt acttggtgct tctaaaatga taatctagcc
      601 tgatggatcg ataacaattc tacctattgc cgttcttttc gtatcatata ttttattgtc
      661 cacttttgct atgagtagat ttccgtcatt tgttgttgtt gtattgctgc tataattacc
      721 accattttga aagtcaatag gtgacatgaa cctcaatgtt gcattaacac taccagttat
      781 tattggatga tctagtgatg ttgtaatgct tagcgttttg aataaatctg ttactctcac
      841 atcgatagga gctagatcat attcttcaat catttcgttt gttgaagagt tgtatatagc
      901 aatagaacct tcaagtttac taggatccaa ttctacttcc tcatgagata aaggaaaata
      961 actgctgttg tgttcatagg tgccccttat cgataatgtt acagtatttg gagaggagac
     1021 ttttttatcg gtctcggttg atccattaac gtctatttca gttattgctc cccagttttc
     1081 atttccatct tcattatttc cattgattgt gatttttaca tatcttgctg tattttcttt
     1141 aaagttatat ctttctgaag atagagtttt tccgctgctt ataccttcat acacatttgt
     1201 ataagtagtt ccatcagtcg aaagagatat tataaaatta tatgatcttg tatttccttt
     1261 gtaccaagca atatctaaac tacaaataac attgttgacc ccaaggtcag tttgaatcca
     1321 tgatccaaca gtttcagttg accatcgagt gttaaggtta ttgtcaagaa catttgtttc
     1381 tatagcatca tggccctcgt cgtcatcacc aaaagatata atgtcagata ttattagatt
     1441 tttattacat gtattcgcat ctgctattgt cattgttatt gggttagtat tggctatgcc
     1501 agtctctgaa attgtgattg tttttgtcat tgttttagac tgattatcag tgacagaggg
     1561 catgggatac aataaaggtg cagttttgtt ggctgtctgt attggctgca acgtttgatt
     1621 gttagcagct gtaatggtat cgttggctgt ctgtattggc tgcaacgttt gattgttagc
     1681 gactactcct atgacattta cactataata tcttgcaaca ttcgcaggat tactaagaca
     1741 tgataattta gaggttagtt catttactcc ttcttgaata agctgataat cttctgtgta
     1801 tgtaaactgc catgttgaat aatcattaac tcctcctgga cctgttgctg tagcattt
//
LOCUS       DATAAS010000422         4407 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3137946, whole genome shotgun sequence.
ACCESSION   DATAAS010000422 DATAAS010000000
VERSION     DATAAS010000422.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4407)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4407)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4407
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3137946"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..200
                     /locus_tag="VHF08_06735"
     CDS             <1..200
                     /locus_tag="VHF08_06735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="diadenosine tetraphosphate hydrolase"
                     /protein_id="HEX2068382.1"
                     /translation="RHNQRLIQKEVIFFLAKTSIRDVTLSYEHNAYTWLAYEKALALL
                     TYKNAKNVLIEAKLFLEQNPP"
     gene            complement(203..997)
                     /locus_tag="VHF08_06740"
     CDS             complement(203..997)
                     /locus_tag="VHF08_06740"
                     /inference="COORDINATES: protein motif:HMM:NF012441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine 5'-phosphate decarboxylase"
                     /protein_id="HEX2068383.1"
                     /translation="MLIRWWELTNKSNSYRNRIINSSRKKKSRIILALDVTPRKGLKR
                     FVKSTIRLLEHHICAIKINYHLILPLSLSEITEINRLAHRYGLVSIADLKLNDIKSTN
                     KIAIEYLSMMEFDAVIVNPFMGKNELISASKQAHKINFGIIALVYMSHPGAEESFGID
                     VVSANKQISGSSQLTQMYKIFFDYASKSHVDGIIIGATQDKILNELSGHKELPVYSPG
                     LGKQGGDIAQAANNGTNFFIIGRSITESKDPLGVIQKLQRQISNSI"
     gene            complement(966..1679)
                     /locus_tag="VHF08_06745"
     CDS             complement(966..1679)
                     /locus_tag="VHF08_06745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068384.1"
                     /translation="MRPKNPYYVQLSDMKDFGRLVCALERAPLPAFSLMMNNEYILAV
                     QTDFIDGRPVIYFVNSPQQRDGQYLAYRIIGGIEEVMMVDFVANPSFVYSPIINIEKF
                     PSALTKIARVQKKSGYLAIRLKDLSSLAKVAAYKTIYDEPPLPLFLFKERTGGQTIVN
                     ESNERLIIGATMSLSESDTISYFYYVILDEEPKDPFLRYSSQRIEQPSFSGRLDEHGY
                     IYLKLIRLAHTHPLVGINE"
     gene            1777..2169
                     /locus_tag="VHF08_06750"
     CDS             1777..2169
                     /locus_tag="VHF08_06750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068385.1"
                     /translation="MNDFDVDSKIHSLLNHAITKLRSYTSDNYNNSLSLWRAYIDIEY
                     AILVLKFSYNHVEPKQQARFKKSNIKHVTERKIIIKPEHCNHEIKRLKSVLRHLDSQD
                     KKLLLNELRSNRDLLKNWLQKGSFNNMI"
     gene            complement(2226..3230)
                     /locus_tag="VHF08_06755"
     CDS             complement(2226..3230)
                     /locus_tag="VHF08_06755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HEX2068386.1"
                     /translation="MPCIVIVGGFYGDEGKGKVIAYLAKKDNCSIAVRGGVGPNAGHT
                     FVDEGKMYKVRMLPSAALNRSTRLLIGPGVLINPEILLKEIEIFSASDRTFIDTQCGI
                     IDQKHIEKDNVEDHLKGFIGTTGSGTGPANADRAFRLLKLAREVDALSLYLEDVSSSV
                     NYSLENKENVIVEGTQGTFLSLYYGDYPYVTSKDVTASGICSDVGIGPKKVDEVLVVF
                     KSYVTRVGGGPLQDEVTREEAEKRGWLEYGSVTGRERRSSPFDMNLAKKAIRLNSATQ
                     IAITKLDVIFPETRGIREFNKLSEKAKEFIQKIEAETGVKVILIGTGAELNDIIDRRT
                     "
     gene            3332..3793
                     /locus_tag="VHF08_06760"
     CDS             3332..3793
                     /locus_tag="VHF08_06760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068387.1"
                     /translation="MSFDQNTSRDILQIVSNLPDFLRKPIILKKLQEFYSLNEGGKYE
                     TISLILRGTSSVEPVKLYPLIKTWLNILAELESVKVTEIFRIYCKFFLLNPTFFEKLN
                     IQPLIDVFLKLENQNKEKLSDCLKEVLFLFPNRKEILKSIPRSTLEKLEIL"
     gene            complement(3799..4059)
                     /locus_tag="VHF08_06765"
     CDS             complement(3799..4059)
                     /locus_tag="VHF08_06765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005506 - iron ion binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe(2+)-trafficking protein"
                     /protein_id="HEX2068388.1"
                     /translation="MTKSCLKCGKAFDEKTIDDPAAEKYPSCADCWKEWTTHAVMVMN
                     EMRLDMSLPEHRKVLRKYEKVFFGLEKGEGELQKNPDKKPEP"
BASE COUNT         1416 a          833 c          687 g         1471 t
ORIGIN      
        1 ataggcataa tcaaagatta attcaaaaag aagttatctt ctttttagcc aaaacaagca
       61 taagggatgt tacattatcg tatgaacata atgcttacac gtggctagca tatgagaaag
      121 ctttggcttt actcacttac aaaaatgcga aaaatgtgct tatagaggct aaattatttt
      181 tagaacagaa tcctccataa ttctatatgc tattcgaaat ctgtcgctgt agcttctgaa
      241 taacacctaa cggatcttta gattcggtta tggagcggcc tataataaaa aaatttgtgc
      301 cattattagc agcctgtgct atgtcgccac cctgtttacc taaccctggg gaatagactg
      361 gtaattcctt gtgaccagat aattcattta agattttgtc ctgcgttgct ccgattataa
      421 taccgtcgac atgggattta gacgcataat caaaaaatat cttgtacatc tgcgttagtt
      481 ggctactccc agaaatctgt ttgtttgcag acaccacatc gataccaaag ctctcttcag
      541 ctcctggatg actcatataa actagagcaa taattccaaa gttaatttta tgtgcctgct
      601 ttgatgcaga tatcaattca ttttttccca taaatggatt tactattaca gcatcaaatt
      661 ccatcattga tagatattct atagcgattt tattagtgct tttgatatca tttaatttta
      721 aatctgcaat agatactaaa ccataacggt gggctagtct atttatctcg gtaatttcag
      781 aaagagaaag tggcaatata agatgataat ttattttgat tgcacaaata tgatgctcta
      841 aaagtctgat tgtagattta acaaatcttt ttagaccctt tcttggagtc acgtcaagag
      901 ctaaaataat acgacttttt ttctttctcg aactgttgat gatcctatta cgatatgaat
      961 ttgatttatt cgttaattcc caccagcgga tgagtatgcg ctaatctaat caattttaga
     1021 taaatatatc catgttcatc caaccttcct gaaaaagaag gttgttcgat tctctggcta
     1081 gaatatcgta aaaatgggtc ttttggttct tcatctaaaa tgacatagta gaaataagat
     1141 atagtgtcgg attcgcttaa actcatagta gctccaatta taagcctttc attactttca
     1201 ttaacaatag tctgaccacc agttctctct ttgaaaagaa ataagggtaa tggtggttcg
     1261 tcatatatcg ttttataagc agcgactttt gcaagactag aaagatcctt taatcttatt
     1321 gctaaataac ctgatttctt ttgcacacgt gctatttttg ttagagcaga agggaatttc
     1381 tctatattta taattggaga ataaacaaaa gaaggattgg ctacaaagtc caccatcata
     1441 acttcttcga tccctccgat aattctatag gcaagatatt gtccgtctcg ttgttgtgga
     1501 ctatttacaa aataaattac tggcctacca tcgatgaaat cagtctgaac tgccaagata
     1561 tattcattat tcatcatcaa tgagaaagct ggtaaaggtg cccgttctaa ggcacatact
     1621 aatctgccga aatctttcat atctgataat tgtacataat agggattttt tggtcgcaat
     1681 ttacatgata attcattaaa taaatgctat taaaatcatc cgcaagcttg gaggttaaca
     1741 attatttaat gatgaatacc acaacagcaa ttaagattga atgactttga tgtcgatagt
     1801 aagattcatt ctttattaaa tcatgcaata acaaagctta ggagttatac ttcagataac
     1861 tataataact ccctgtcgtt atggcgcgct tatatcgata tagaatatgc aatcttggtt
     1921 ttgaaattta gttacaatca cgttgaacca aagcaacaag caagatttaa gaaaagcaat
     1981 atcaaacacg taactgaaag aaagataata ataaaaccag aacattgtaa tcatgaaatt
     2041 aaacgattga aatctgttct ccgtcaccta gattctcaag ataaaaaatt actacttaat
     2101 gaattgaggt caaatagaga tctactaaaa aattggttgc aaaaagggag tttcaataat
     2161 atgatataat acaatgtaac atgatatgtt attttaacat caagttctat gcacaagtgc
     2221 tctcgttagg tacgacgatc tattatatca ttcaattctg cacccgttcc tataagtatc
     2281 acctttaccc cagtctctgc ctctattttc tgaataaatt cttttgcttt ttctgataac
     2341 ttgttaaact cccttatgcc tctagtttct gggaaaatga catcgagctt tgtgattgct
     2401 atctgtgtcg cactgttcaa tcttatggct ttctttgcta ggttcatatc aaatggtgaa
     2461 gatcttctct ccctgcctgt tacacttccg tattcgagcc aacctctttt ctctgcttcc
     2521 tcacgagtaa cctcatcttg caatggaccg cctccaacac gtgtaacata ggatttgaat
     2581 acaaccaata cttcgtctac cttttttgga ccgataccta cgtcggaaca tattcctgac
     2641 gcagtcacgt cctttgacgt tacatatgga taatcaccat aatacagaga tagaaatgta
     2701 ccctgtgtgc cctcaacgat cacattttct ttgttttcta aggaataatt aacggaggaa
     2761 ctcacatcct caagatacaa agatagcgca tcaacttctc gagcaagttt taggagtcta
     2821 aaggccctat cagcatttgc cggacctgtt ccgcttcctg tagtgcctat aaagccttta
     2881 agatggtcct ctacattatc tttttctatg tgtttttgat caattatgcc acattgtgta
     2941 tcaataaacg tcctgtcact tgcactgaat atttctattt cttttagtaa tatctctgga
     3001 ttgatcaaaa cacccggacc tatcaacaat cgcgtcgagc ggtttaacgc ggcgctaggt
     3061 aacatcctaa ccttgtacat tttaccttca tcaacgaatg tatgtccagc attgggtcct
     3121 acaccacctc taaccgcaat tgaacaatta tcttttttag caagatatgc tattactttt
     3181 cccttgcctt cgtctccata gaatcctcca actattacaa tacagggcat ataaaatccg
     3241 ttctgagcag taggtattta attctagttt tgctagaata gcatgtttaa ccttttttaa
     3301 gcttttataa tgatatatag gattaaaatt attgtcattc gatcaaaaca cttctcgtga
     3361 cattcttcaa atagtttcga accttccaga cttcttaaga aagccaatta ttttaaaaaa
     3421 actccaagaa ttctattcgc taaacgaagg cggcaaatat gaaacaatat ctctgattct
     3481 aagaggaacc agctcggtcg aaccagtcaa gttatatcca ttgataaaaa catggctgaa
     3541 tattttggca gagttagaaa gtgttaaagt aactgaaatt ttcagaatct attgtaaatt
     3601 ttttctcttg aatcctactt tttttgagaa attaaatatt caacctttaa ttgatgtctt
     3661 tttgaaactt gaaaaccaaa acaaggagaa attgtcagac tgcttaaaag aggtgctttt
     3721 cctctttcca aatagaaaag aaattctcaa gtcaattccc agatcgacct tagaaaaact
     3781 cgaaattcta taggtttatc atggttcagg ttttttgtca ggattcttct gcaattcacc
     3841 ttctcctttt tccagtccaa aaaagacctt ttcatactta cgtagaactt tccgatgttc
     3901 cggtaaagac atatctaatc gcatttcatt cataaccatt actgcatgag ttgtccattc
     3961 tttccaacaa tctgcgcaag aaggatattt ttcagcggct ggatcatcaa tagtcttttc
     4021 atcaaacgcc ttgccgcact ttagacagct ttttgtcatg taataattat ttccaaattg
     4081 tcgatatttt attctttatt ttgaataatg atagaatacg cataattaag aaagataaca
     4141 taatagggat gaaatttgaa taggaagtcg ccgttgtata gttgattcac agataatact
     4201 aaagattatc tgataaataa actactaaat catgatcgaa ggacagcttt catctctacg
     4261 gattattcat aagaaaaaag gtggccagaa caagaataat attcatcgat ccatcgaaca
     4321 aactcgcaag gtaacattta tgatttaaag aactattata ggaaaatatt ctaatttata
     4381 ttcatcaaat tgaaaaactt gccttga
//
LOCUS       DATAAS010000423         2822 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3677540, whole genome shotgun sequence.
ACCESSION   DATAAS010000423 DATAAS010000000
VERSION     DATAAS010000423.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2822
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3677540"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(691..1845)
                     /locus_tag="VHF08_06770"
     CDS             complement(691..1845)
                     /locus_tag="VHF08_06770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068389.1"
                     /translation="MRLSQPPPTQNLLKAVILADVVIIILVLLMLLQFSPYYAEATTL
                     EKQHQILSLSPSHSSSSTITKDTPPQKENNSIMMTKLLTKSKTKIGAWDPYQMPLEEL
                     QGRKQEKAIKSLLEQGFSEYYFVMNDFNDSKAKRAIEKLLKSSDKTDLKILIILLPPS
                     EGGPDGNYDWDGWIDYFNDLKDKHRSFKGFTIDDFNWISTRNDTKFWRNIDYMEYSNL
                     SKALYEKREDVQFYPVIYFEGEGTNTEISEYSKFIDGVILASACYYNITNLEKNLLTF
                     ARIFDNEPIRYVVYPTITYNYSRYNYNPPSDRLVMATLSIATKVADGIVIWRELDSRV
                     VEDYLSNHDDQKYLSKISRIEKLQIRDEMIWRKANPTLANSALFQGHCHL"
     gene            complement(2620..>2822)
                     /locus_tag="VHF08_06775"
     CDS             complement(2620..>2822)
                     /locus_tag="VHF08_06775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068390.1"
                     /translation="IIHVRCNICEIMIIEEDLGKHISSQQHQMRKKTLEDNLANLKEE
                     GEGDNYPSIVLKWSQELSPNND"
BASE COUNT          931 a          459 c          447 g          985 t
ORIGIN      
        1 tgtgatggaa agataattgc attaggtgga ggcggatata atcaaaaaaa tattgcagat
       61 ggatggacag aagttgtgag gtcatttatt agcagtatac aatagagcca gacctttgaa
      121 agatttacct aatactatac agatcgataa gattattctt tttctaatag taattaggag
      181 gcttctttac ctgcatatat acaggtccta ataattctat attatatttc ctttacactg
      241 acatggcttg gagtgagaaa ttcgaaccat gatagcaatt tcagttcatg tgatgagatt
      301 attaaatact tttcaaaaaa taactatcag gatacgtcat aaatgagatt gctatattac
      361 aatacacatt gaagataatg acagaggaaa agaaaattga aaagatgcat tggtattgag
      421 aagacagata aaattaaaac caatttactt cagtcactat agtaaattat agtctcaaaa
      481 tattgtagat acatttccat tagagattgc aaatgaggta ctttcaaaag tgaaagtgtc
      541 agatgtaaga taccgcattc ttcttctata atatcacata gaactcaaga gcatatttat
      601 catttctggt acatggttag caaatatgcc aaattaccaa gcctagtata tgctaccata
      661 tttattattc aaaaataagg ttcttaaaga ttagaggtga caatgtcctt ggaaaagtgc
      721 tgaattggct aatgtaggat tcgcttttct ccaaatcatc tcatctctaa tctgtagttt
      781 ttcaatccta gagatctttg acagatattt ctgatcatca tgattagaca ggtaatcttc
      841 tacgacacga ctatcgagtt cacgccatat gactatacca tcagcaacct ttgtagctat
      901 agacagtgta gccatcacaa ggcgatctga tggcggattg tagttgtatc tgctgtaatt
      961 gtatgttatt gttggatata cgacatatct aatgggttca ttatcgaata ttcttgcaaa
     1021 tgttaagagg tttttttcta ggtttgtaat gttataataa cacgcactcg ctagaattac
     1081 accatctata aatttgctgt actcagagat ctcagtgtta gttccttcgc cctcaaaata
     1141 tataacagga taaaactgta catcttctcg cttttcatat aatgcctttg aaaggtttga
     1201 gtattccata tagtcaatgt tcctccagaa ttttgtatca ttccgagtgc ttatccaatt
     1261 aaagtcatct atagtaaatc ccttaaatga tctgtgctta tctttgagat cattaaaata
     1321 gtctatccag ccatcccaat catagtttcc atccgggcca ccttctgaag gtggtagtaa
     1381 aattatcaat atttttaggt cggtcttatc agatgatttt agtaattttt ctattgctct
     1441 tttggccttt gaatcgttaa agtcattcat tacaaagtaa tactcgctga aaccctgttc
     1501 aaggagtgat tttatagcct tttcttgttt gcgaccttga agttcttcaa gaggcatttg
     1561 ataaggatcc cacgctccaa tcttggtctt actttttgtt aatagttttg tcatcataat
     1621 actgttattt tctttttgtg gtggtgtatc ttttgtaata gtagaagaag aagaatgaga
     1681 cggagacaat gacaatatct ggtgctgctt ctccaaggtg gtggcctctg catagtaagg
     1741 agaaaactgc aataacataa gcagaactaa aattattata actacatctg ctagaattac
     1801 agctttaagc aagttttgtg ttggtggtgg ttggcttaat ctcatatatc atctgataaa
     1861 ttaggattag acgatcaaaa gccctacttt atacacttag agaaatagaa attgcagaat
     1921 attccacaaa ataccgtgtg cttgtccatt attaaatact aatgctgttg gcatactata
     1981 tccttcatct catcaatata gaataacagt gataattttt gatggtgtct tgattattag
     2041 catacaacat atctattata ttctttggtg aatgtccagt aataaataaa tatttttatt
     2101 agctattaaa atgtaaaaag ctaaacccac tttacattta caatttacaa ttaaatctga
     2161 taagttcaaa ataaggatac tatccgaagt ctttaaaaga gataatatgt aaaataaacg
     2221 ataactctta gtaaatgatt ccaaaaaaga aaaaagttat gatacatctt atctagtaac
     2281 aaattgtttt tggtttgacc tagttaccta ctatcttact actgccaaga tgacgaactt
     2341 gatgttcact aaatgacaat aaactgaagt atttaaaaat actatcaatt atctttccaa
     2401 aagcaaagta actttagaaa agcttattgg cgaaaagcgt acgagaatta taagacaata
     2461 ttttcacatg agatatcacg caaattttca agcaacctta ttgagttgtc tttaatcatc
     2521 tttcagagaa tcctgatcac tcccaataga tatttgaaag gtgaataaca cttaactaaa
     2581 tataatatct ctactttcta atctccttta tgcaaattat caatcgttat ttggtgacag
     2641 ctcttggctc cattttaata ctattgatgg gtagttatct ccttctcctt cttctttcaa
     2701 atttgctaga ttatcttcta atgttttctt tcgcatctga tgttgttgag aactaatatg
     2761 ttttccaaga tcttcttcta tgatcattat ttcacatata ttacatctga catgaatgat
     2821 ct
//
LOCUS       DATAAS010000424         2230 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_449263, whole genome shotgun sequence.
ACCESSION   DATAAS010000424 DATAAS010000000
VERSION     DATAAS010000424.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2230)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2230)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2230
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_449263"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(489..1040)
                     /locus_tag="VHF08_06780"
     CDS             complement(489..1040)
                     /locus_tag="VHF08_06780"
                     /inference="COORDINATES: protein motif:HMM:NF018627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068391.1"
                     /translation="MAGIGAARTVAIDVDSVLADVILVWTKEYNRRRHARITKREIIV
                     WDIPKILPVSQNEIYQLFSYVWKYRWKEIPPTEPQIGEITKRIHRKGYRISILTKRER
                     PTVAYVAKWLDFHDVYSDDLLFVYDSTPKAEYPFDILIDDAPKNLIDVIPPKSAILFN
                     QPWNRDFDWPVRVNSLSDAEKML"
BASE COUNT          800 a          337 c          341 g          752 t
ORIGIN      
        1 ttgaaaaagg aaatcaatgc agatgcagtt tactataact cgcctacaat tcttgcgcgt
       61 ggtataggtg tttcagaaaa tgatctctgg ttccctgaat gggtaagatt tttagattat
      121 gttaaatgat gaaaaaagct atactgaata gtattgagca aagacgtagt tattctcaca
      181 aacttcttaa tttaatttct ctattactat aatagatata aatcaaaacc aatacatcaa
      241 ataaagcttt acagtaaacg ctcttacaaa cgtatttaga aaactcaata atgttgttga
      301 tcagtattga atagatatat aatcagtgag agattatttg agatgaattt cctgtattta
      361 gaatcaattt ctatttgcat gtgttgtcca aaccatttat ggtgagtcca gacgaacagc
      421 tgagaaaatt tatctacaat tcgacaacca ttctcaggag tttatcatga atgtcatttt
      481 catcttattc agagcatttt ttctgcatcg cttaatgaat ttactcttac tggccagtca
      541 aaatctctgt tccatggttg attaaataaa attgcagact ttggaggaat tacatctatt
      601 aggttctttg gagcatcatc aattaaaata tcaaatggat attcagcttt cggggtggaa
      661 tcataaacaa atagcaaatc atcggaataa acgtcatgaa agtcaagcca ttttgcaaca
      721 tatgctactg tgggcctttc cctctttgtt aaaattgaga tcctgtaacc tttacgatgg
      781 attctctttg taatctcgcc tatttgcggc tccgtcggag ggatctcttt ccaacgatac
      841 ttccatacat agctaaaaag ttgatagatt tcattttgac taacaggaag aatttttgga
      901 atatcccaga ctatgatttc tcttttagta attctagcat gtctacgtct attgtactcc
      961 tttgtccata ctaatatgac atcagctaaa acagaatcta catcaatagc aacagttctc
     1021 gctgctccaa tacccgccat agaagatgac gatagtttca gaaaactgat aatttatctg
     1081 ttcatactcg ttattgctcc atcaataaca tcaaagttga aaactaataa aaaaattgtt
     1141 attgacactg atggtattat gagcgataat tctctacgaa agatttggac cgcagattcg
     1201 caatctcata tcataaacat tagttaagtt attttataag acatatctgt aatattgcaa
     1261 gttatgtcgg ttacagaata agaaaatgta ttcaaatacc gtcaagtctt atcacagtct
     1321 tagataatga gtaaataatt aggagatatt atataggaaa gataagaagt gttgaatata
     1381 tggtgttaga aaaaaagttt ggatcttttt tgatatccat aagcaatagt ctaatttatt
     1441 acaaatgaat aaagagctgc tataataata attctataat cttcgcttaa tctaaggtta
     1501 gacaataact gaacaaatga gactaagaat cagcttcttt atacaggcat aataatatct
     1561 cgtttttcta atatcataaa aacaaaatta tgctgatttc accacgatct aattggagtg
     1621 acttattaca atattctagc aatatagtaa gaagatgcgg cttttacttc taatacaata
     1681 tcattacaaa acgaaaggaa aggcctaatt tttagattta ttaattttga taattgtctt
     1741 cttatcatag ataaaaagat tataaaggtc atgtgatctt ccgagaagaa gagaaatata
     1801 atggtaataa tcaaatgaac tcgaagcgct ttttctgctt aaaaccaagg cagaaaaatc
     1861 ctgataacat tatttaaaga taataataac ttgacacgga gaaaaggatt cgatgctttc
     1921 taaaatggat ggtaatttat gatatattat acatagaata tattgcgtga cgttattcga
     1981 atgtaagatg atacaaaagg tatcagacaa acaaaataaa tttctctttt gtttgaatat
     2041 tatataatgt caaacgaaat aaatttatta gcttttatga actgaatttg ctaacatcac
     2101 taatttcaat cctctcacaa taatcaacta tggatctttc tgattttact tttaactgta
     2161 gaattaacaa caaaaggtag gtatttataa attgttttgt ataaatacct taagaaagtt
     2221 gttgaacaac
//
LOCUS       DATAAS010000425         3739 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2615732, whole genome shotgun sequence.
ACCESSION   DATAAS010000425 DATAAS010000000
VERSION     DATAAS010000425.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3739
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2615732"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(419..913)
                     /locus_tag="VHF08_06785"
     CDS             complement(419..913)
                     /locus_tag="VHF08_06785"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX2068392.1"
                     /translation="MIQTKKRKFSRILVATDGSETSLRAAEYAIEIAKEKKEESNDCL
                     LIAIYVLPSQVGYTYSSDIYGLATSTSISEFLESIKKEAEKWFDKIKQKADDINKNIK
                     LKTEVVATDRSVVGAIVEYAEHENIDLIIIGTRGRSGFKKMLLGSVASGVVTYAHCPV
                     MVVK"
     gene            complement(1647..2201)
                     /locus_tag="VHF08_06790"
     CDS             complement(1647..2201)
                     /locus_tag="VHF08_06790"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEX2068393.1"
                     /translation="MNATQDLKQDHITIRRLRDIVQICSNRLYANENIPIEDIKIISV
                     VIEEFVDRFHHGKEEQAYFPQTKDKDSFSEDVRKFLIEHELGRRIAKMLLRQLQAWSK
                     GIGYREPIARFLKSYAVFITDHTYKEDRFFDLIENKKSISNEEDKSLIRHYESCRNQA
                     GGKARMDQMIKLIEYLEEREWMHR"
     gene            complement(2360..2545)
                     /locus_tag="VHF08_06795"
     CDS             complement(2360..2545)
                     /locus_tag="VHF08_06795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068394.1"
                     /translation="MQIQELKLQKNFLVENSVPFQWLDIEIYQGEDHLLALYICSTSF
                     DTIANLPLVLVPELLDL"
     gene            3061..3399
                     /locus_tag="VHF08_06800"
     CDS             3061..3399
                     /locus_tag="VHF08_06800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEX2068395.1"
                     /translation="MKRMEIIIPDRRLHDVSEILKDANTGGMSCYRIEGRGKVKAEAV
                     SVGRGTMRYKPEFIPRTKVEVVVKDEQVEDLIKNLREKLGDNIGGKIFVTDVAMAVDL
                     TTGNREESAI"
BASE COUNT         1226 a          608 c          594 g         1311 t
ORIGIN      
        1 tatattctta ttgacagtct tgtcaataag aatatatcaa caacgtgtat gaataaatag
       61 aatagagtca ccataactca tcttctatgt agtgcatcaa ttacagagta catatataca
      121 acaagataaa gatttgatta aaaaacatag ggtcaaagag taattatatg gcgaacaata
      181 ctatcgccca gaactgtcag tatagataga attgcagtag attcaataaa aaaatgcagg
      241 acacgccaat ttgtgtaaat gaaattatca ataaatcttt tgcacagtag catattagaa
      301 tattctgatt atatttgact agtgtaatat gatcacacac ttcctacaga aaatactaca
      361 taaacagaac aagacatagt taaagtattt ttactgctaa atcaccaaga tcatctcatt
      421 actttactac cattacagga caatgtgcat aggtcaccac tccagaagca acacttccaa
      481 gtagcatctt tttaaaacct gatcttcctc gagtacctat tataatcaaa tctatatttt
      541 catgttccgc atattcaact atcgcaccta caacagatct atcagttgca acaacttcag
      601 ttttgagttt aatattctta tttatatcat cagctttttg tttaatcttg tcaaaccact
      661 tctcagcttc tttcttgata ctttctagga attcacttat tgaagtagaa gtagccaatc
      721 cgtaaatgtc agatgagtac gtatatccta cctgtgaagg caaaacataa atagcaatta
      781 gcaaacaatc attactttct tctttttttt cttttgctat ttctatagca tattctgctg
      841 ctctcagaga cgtttccgaa ccatctgttg ctacaagtat tctcgaaaat tttcttttct
      901 tcgtttgtat caatttataa atacattatt catctaaatt taaatcaatt catcatttat
      961 gaattggttg gatctagaga aggactgcgg ctggaattta tagaacaagc aaaatacttg
     1021 ttgaaaataa catctcatta attgttatct atctataggt ataaacttat acttatataa
     1081 tttgtgaata ttattctctt tattgcgcct aataatctat aaagaagact ttaagaattt
     1141 ataaaaaacc gatgttttct cctatagtgc ataatcacta gtttcttctg ttccaatata
     1201 atatgcttcc gcaacggcat aaaagatatc ttgacatcat gatctgaacc tgtacatatg
     1261 acatttagta tattgtctat aattggcttt gctaatgaat ctgatacaag tacttcgatc
     1321 tatattcaag agctgaattc tgggatatat ctcattatac ccatgctaac cgatactggc
     1381 tctcgttttg agctacctct acccttgaca tcataaaatg tcataccacc tactaatctt
     1441 tatgaagaat accttatctt cttgaaggcg ttcatgtgaa ttgttatatc taatcttttc
     1501 aaagctatag ttttttaggt caaggagaga gaaagagtaa taataaatcc gtaaataata
     1561 tgcatcacac atgctacttt acatgtatat tatatgaaat acagtcgaga tattgaagag
     1621 aatattaaga tatgttcctt acattcttat ctatgcatcc actctctttc ttctaaatat
     1681 tcaattaatt ttatcatttg atccattctt gctttccctc ctgcttggtt tctacaactt
     1741 tcataatgtc tgattaaact tttatcttct tcattcgata tacttttttt attttcgatc
     1801 aagtcaaaga atctatcctc cttatatgtg tggtctgtta tgaaaacagc atatgatttt
     1861 aagaatcttg caattggttc tctataacca attcctttac tccatgcctg aagttgacgt
     1921 aaaagcatct ttgcaattct tcttccaagc tcatgttcta tcagaaactt gcgaacatcc
     1981 tctgaaaaac tatctttgtc tttagtttgt ggaaaatatg cttgttcttc ttttccgtga
     2041 tggaacctgt caacaaattc ttcaattacc actgagatga ttttaatatc ttcaattggg
     2101 atattttcat tagcatagag tctattggaa catatttgaa ctatatctct taatcttctt
     2161 attgtgatat ggtcttgttt aagatcctgt gttgcattca attgaataat cctctacgtt
     2221 gcatttgtga tatttaattc acgtatattt ctgttgccta ttgattataa gttatggggg
     2281 tatacccttt aacatatcta ccttggattt tgaaattatg caatacgaca tacaatttat
     2341 gcaattcttg gtattggttc tataagtcga gaagctctgg aacaagtact aaaggtaaat
     2401 tagctatggt atcaaatgaa gtagaacaaa tgtacagagc aagcagatga tcttctcctt
     2461 gatatatttc tatgtcaagc cattggaaag gaacactatt ttctactaaa aagtttttct
     2521 gtaacttgag ttcttgtatt tgcaatatct attctactag gtagtatcaa ccatgtagtt
     2581 tgccaagttc ttccttttgt aagtgttgtt ttctatcctc ctgggtggtg aatatggcgc
     2641 cacatatgaa gcactggaaa ttagaggata ttcttgatac accgctatca gatttacgag
     2701 agttatacga gtcttcttca gccatatgat tagtttcaag tttggttaca taagcatttg
     2761 ggaatacatt gcaatatagc aaatgtatat gctgctatgg gtagcctatg accagatatt
     2821 cattcgtgtt tgatttttga tgattatcat tttccatgca ataaagaagg gtatagtaga
     2881 agacacatgt cagtaattgg attaagttgt ttatttttgt attacatatg agaacaaaaa
     2941 ttaagatttc atatcttggg attcttaatg ccgagcagct aagttaccag agactgtaat
     3001 gcatacccta tgcttataaa ttagtcctat actataaaaa cacaaggtct aggcatcacc
     3061 atgaaaagaa tggaaatcat aataccagat agaagattgc atgatgtaag cgaaatatta
     3121 aaagatgcta atactggagg aatgagttgc tacagaatag aagggcgagg aaaggtaaaa
     3181 gcagaagctg tttcagtagg acgtggtacc atgcgttata aaccagaatt tattccacga
     3241 actaaggtag aagtagttgt taaagatgag caagttgagg atttaattaa gaatttgaga
     3301 gaaaagttag gagataacat tggaggaaag atattcgtta cagatgttgc tatggcagta
     3361 gatttaacaa ctggaaatag agaagaatct gcaatatagc ttgtatataa tctagcgcgg
     3421 catatatgtt aaattgtaat gccaataaag cataaatgat ttttatttga ttaatttcat
     3481 tcaatctctt gctgttagtg gaattaagtt ataatttagg tttctctctg ttgttaaaaa
     3541 gcaatatatt ctcttacata gattatcaaa tgatagcata tcaaggttgg aattcttgta
     3601 tcatctagcg cagtcagata attgagagga ctatgggtct agtaagagga ggaccactgc
     3661 tggcataatg tcctgtgaat ttcagaaaca tatatgaaag aaattattcg aaattgtgaa
     3721 aaaaagagtg atattcagc
//
LOCUS       DATAAS010000426         2124 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5308952, whole genome shotgun sequence.
ACCESSION   DATAAS010000426 DATAAS010000000
VERSION     DATAAS010000426.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5308952"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1085
                     /locus_tag="VHF08_06805"
     CDS             <1..1085
                     /locus_tag="VHF08_06805"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2068396.1"
                     /translation="TEEDTCLCMNQQKIDQLTERILNETLSAMSCLNLYLGHRLNLFQ
                     SIAESGPISSIELSNKTKYSERYLREWLECMTVLGYIEHDPATNKFSISQEHAAVLCE
                     RDNSAYTIPFVYCIPSFASVVDKLLEAFRTGKGVPYSSYGPDLIFAQGEGNRPMFVND
                     ISRWISSMPDIESKLKSQGGRVLEVGCGDGWASIALARSFPLVKIDGIDADSSSIENA
                     SRNVEEAGLSDRISLHLTTIEKAALEEKYDLVMTFESVHDIAYPIKALEKMREILAPR
                     GSVLVGDVKMKEVLEEKNDFPGRFYYNFSVLLCLPQSMAYPDSVATGAAMTPSTFKNY
                     AKQAGFSKIDILPVDHFIWQFYRLEP"
     gene            complement(1770..1922)
                     /locus_tag="VHF08_06810"
     CDS             complement(1770..1922)
                     /locus_tag="VHF08_06810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068397.1"
                     /translation="MKKKKKKRICKYCGWDMDESDIEILIFFHSDCWKEYRKDGLLYP
                     MPGCVK"
BASE COUNT          738 a          345 c          352 g          689 t
ORIGIN      
        1 gaactgagga ggatacttgc ttgtgtatga atcaacagaa aattgaccag ctcacagaaa
       61 ggattcttaa cgagacactt tctgcaatga gttgtcttaa cttatatttg ggacatagac
      121 tgaatctctt tcaatctata gctgagtcgg gtcctataag ttctatagaa ttatctaata
      181 aaaccaaata ttctgaacgc tatctacgtg aatggttgga atgtatgacg gttcttggtt
      241 acatagaaca tgatcctgca acaaataagt tcagtatctc acaagaacac gcagcagtat
      301 tatgtgaacg tgataatagt gcatatacaa ttccttttgt ttattgtatt ccaagttttg
      361 catcagttgt ggataaattg cttgaagcat ttagaactgg taaaggtgtt ccatattctt
      421 cctatggacc agatttgata ttcgctcaag gagaaggaaa tcgaccaatg tttgtcaatg
      481 atattagtag gtggatttct tctatgccag atattgagag caaacttaaa tcacaaggag
      541 gacgtgttct tgaagttgga tgtggtgatg gctgggcaag cattgcgtta gctcgatcat
      601 ttcccttggt taaaatagac ggtattgatg cggattcttc ttctatagaa aacgcttcaa
      661 gaaatgtaga agaagcaggc ttatctgata ggatttcatt gcatttaacc actatagaga
      721 aagcagctct tgaagaaaaa tatgatttgg tgatgacctt tgaatcagta catgatatag
      781 cctatccaat taaagcttta gaaaaaatga gagaaatact tgctccaaga ggcagcgtac
      841 ttgttggtga tgtcaaaatg aaagaagttc ttgaagagaa aaatgatttt ccaggcaggt
      901 tttattataa ttttagtgtg ttgctctgtc ttccacaatc tatggcttat cctgactctg
      961 tagcgacagg ggctgctatg actccttcaa ctttcaaaaa ctatgcaaaa caagcaggat
     1021 tctcaaaaat cgatatttta ccagtagacc attttatatg gcagttttat cgtttggaac
     1081 cataattata acaaactaaa aataatctca agagctcaca ctgtaataat aataatataa
     1141 aaaagcaaac agttaagtca atggataata tagtttagcc taaacttttc ttttacacaa
     1201 ggaaaataat aacaatagca cttttgtctt tgtctaattc agttcatccg gtaaaatcca
     1261 agcaaattcg aatgagataa caatagtctt gatctaaacc agaatgtgat aaggccaata
     1321 gagaaatgat agaaaagata gcagagaata ctttagaatt tctaaagata taatacatat
     1381 attattattt caggacactt caaacagaga gttatttgaa attagttagt tttgtataat
     1441 aaacaaatta aggtaataat atgcttctaa aatatcggtt tcaatctata aaccttaata
     1501 gaaagataat tcagtcccct gtaatgatca tcaaagtgag agtaaaaata caagaataat
     1561 atcgaaaaag ttactatcaa attcagaact acaaatcttt ttcctatgta tgcgcttgtc
     1621 atttggaatc aagatagaaa caaatgagga tcaaaaatga tgaaaatgct tgttttgcaa
     1681 atgcaaatat ttatgacaag gaattagcag tatagaatac agatctgata atcgtaccat
     1741 caccacaatc acaacaatta ctaccagtat tatttaacac atcctggcat aggatatagc
     1801 agaccgtctt ttctatattc tttccaacaa tcagaatgaa agaaaatcaa tatttctata
     1861 tctgattcgt ccatatccca tccacaatat ttacatattc tctttttctt cttctttttc
     1921 attttttacc agtataacta tgtccttcct ctgtcaccat ccatcttaat tcaaactgct
     1981 ctaatgtttt ttctatttgt ctcactatta ccctagcaat aagagaattt actatctatt
     2041 aaattttgat gccattagag gataagatcg tcattatttt accatatata ggaaattaaa
     2101 aatattgtgt cttgctgcgc tttg
//
LOCUS       DATAAS010000427         1585 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2618272, whole genome shotgun sequence.
ACCESSION   DATAAS010000427 DATAAS010000000
VERSION     DATAAS010000427.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1585)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1585)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1585
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2618272"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            315..1310
                     /locus_tag="VHF08_06815"
     CDS             315..1310
                     /locus_tag="VHF08_06815"
                     /inference="COORDINATES: protein motif:HMM:NF038353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FxLYD domain-containing protein"
                     /protein_id="HEX2068398.1"
                     /translation="MNTSKETVALVFLFIAAASFALNSITSEVYAEENSSNSTVVVKE
                     QGSYADSLGRLNIVGVVYNEGNKPVSVKVGLNVMNDIGNSHASSNMILTNDTYARIIY
                     PSTSVPFKFVLESGQQPSGKSFIESITEVDAAYYDVLHLNYTNMAIGTNKALVGNVKN
                     VAPFAVHNVSVYASVHNNNGSQIDSVKSNVIPTINSGEEVEFMVMPDSSVKPDVYFYS
                     CAGVELDPPISTINTGDGGFIAYDLRGLVKISKLGYENSNDSIVFSVDHYNPTGGNIT
                     LKIPQMVDNHKINVLIDGTPYEKAKINMDGKTMSIDIVIPPEEHSIQIKGVTKSI"
BASE COUNT          577 a          249 c          266 g          493 t
ORIGIN      
        1 aacagaattg ttgaatcttc taaagatcat tttgatattt atattaatat tgcaacaaca
       61 acaacaacaa aaacgactat tactaatgat atgaatttca tagatatatt ttcaaagcag
      121 ttatacttac ataaatacaa gctatacaac caaggttttt atttcatttt ataaatcata
      181 atattttttc taatagatat tccaaagagg aatcataata attgtagtta ggttgatata
      241 tactgcgaat attgttatat tccgtctaat cctctttggc acatactaat gacaataaat
      301 ataaagaata tgaaatgaac acatcaaaag aaactgtagc attagtgttc ttatttattg
      361 ctgctgcttc attcgcattg aattcaatca catcagaagt ctacgcagaa gaaaacagca
      421 gcaacagcac tgttgttgta aaggagcaag gctcttatgc agattcgcta ggtagactta
      481 acattgttgg agtagtatat aatgagggaa ataagcctgt tagtgttaaa gtaggattaa
      541 acgtcatgaa tgatattggc aatagtcatg cttcttcaaa catgattttg actaatgata
      601 cttatgcaag aataatttat ccatcaacca gcgtaccttt taaatttgtg ttggaatcag
      661 gacaacaacc tagtggtaaa tcattcatag aaagcataac agaggttgat gcagcttatt
      721 atgatgttct gcatttgaat tacacaaaca tggcaatagg aactaataag gcacttgttg
      781 gtaatgtgaa gaatgttgca ccatttgcag tccacaatgt atctgtttat gcatcagttc
      841 ataacaataa tggatctcaa atagattctg ttaaaagcaa tgtcatacca accataaatt
      901 ccggagaaga ggttgagttt atggttatgc cagatagttc tgtgaaacca gatgtctatt
      961 tttacagttg tgctggtgta gagctagatc ctccaattag tactatcaat actggtgatg
     1021 gtggatttat tgcttatgat cttcggggat tagtaaaaat aagcaaacta ggatatgaaa
     1081 actctaatga tagtatagta ttttcagtag atcattacaa tccaacaggt ggaaatataa
     1141 cgcttaaaat accacagatg gtcgacaatc ataagataaa tgtactgata gatggaacgc
     1201 catatgaaaa agcaaaaata aacatggatg gaaaaacaat gagtattgat atagttatac
     1261 ctccagaaga gcatagtata cagataaaag gggtcacaaa aagtatctag taatgttttt
     1321 aacaatcatc acattcactc aatccaactc acaatcgacc tattgtctat gttgagcagt
     1381 ttggtcagaa agtaactgat tcggatcaac aattatctat gataaaattg agtcatttgc
     1441 aaatctaatc tttaagagcg ctaccgcaga aaaatcaagt catattatac aagtaattaa
     1501 tgtatcatat atttattgca tgtcatactg taaaagcact ctctacttag gcagctccaa
     1561 agattccgac ctcctctact tcagc
//
LOCUS       DATAAS010000428         1741 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1008391, whole genome shotgun sequence.
ACCESSION   DATAAS010000428 DATAAS010000000
VERSION     DATAAS010000428.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1741)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1741)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1741
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1008391"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            264..395
                     /locus_tag="VHF08_06820"
     CDS             264..395
                     /locus_tag="VHF08_06820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068399.1"
                     /translation="MTKNVKLKICPICGCTEHRWIGCITHWNSHNKNIEGKCEMRDE"
     gene            complement(415..1071)
                     /locus_tag="VHF08_06825"
     CDS             complement(415..1071)
                     /locus_tag="VHF08_06825"
                     /inference="COORDINATES: protein motif:HMM:NF024724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEX2068400.1"
                     /translation="MLDTLTNIIYIVTDVHVTMKWSFNDFTKSGFAKLLKPFENSIDD
                     IVKITRAFGIATKAHLGQFRNGNKVEPYINHPLRVALILIEELGIDDVDLICASLLHD
                     TIEKNNNSSISTEQLRKEFGDSIYSIVHALTKPKIRNEEKEKILNEYFQNIANSSEAI
                     RYIKLADRLDNIRGMKNLIHKDKVLRYKLETQKYVVPIAEKTDEKLAFKLSIALYELK
                     "
BASE COUNT          589 a          264 c          256 g          632 t
ORIGIN      
        1 aatgacaata agtcaatttg gaaatatcaa aagaaattct aatagaaata caaatcatca
       61 caaaaaagca acgaaaatag tgttagtgaa tttcctttgt tcgtttgttt attcgtcttg
      121 ctccaattta tgatgggtaa atttcttaga ttaattatat atttctatat tagtatttct
      181 ctattagatc aggaaagata tgtaaaatga atatatatat tatatatagg taattagaaa
      241 agtcgaatga agagtgattg atcatgacaa aaaatgtaaa gttgaagata tgtcctatat
      301 gtggttgtac tgaacacaga tggataggtt gtatcactca ctggaacagc cataataaga
      361 atatcgaagg aaaatgcgaa atgcgagatg aatagatatg ataatgtcct tctcctattt
      421 aagctcgtat agagcaattg ataatttaaa tgcgagtttt tcgtctgtct tttctgctat
      481 tggaacaaca tacttctgag tttctagttt gtatcgcagt actttatcct tatgaattaa
      541 attcttcata cctctaatat tatccaggcg atccgctaac tttatgtacc taatggcttc
      601 agaactattt gcgatatttt ggaaatattc atttaagatt ttttccttct cttcatttct
      661 tattttgggc tttgtgagtg catgaactat actatatata gagtccccaa actcttttct
      721 taattgttct gtagatatac tactattatt gtttttctct atagtatcat gtaaaagaga
      781 agcacaaatg aggtctacat catctatgcc taactcttct attaaaatga gggcaaccct
      841 aagtggatga ttaatatacg gttctacctt gttgccattt ctaaattgtc ctaaatgtgc
      901 ctttgtagct ataccgaagg ctcttgttat ctttacaata tcatcgattg aattctcaaa
      961 tggttttaat agtttagcaa atcctgactt tgtaaaatcg ttaaaactcc atttcattgt
     1021 aacgtgtaca tcagtaacaa tgtagataat attagttaat gtatctaaca atgaatagat
     1081 ctttaagaaa agcttatact tttgaaagta tcgttgtctc tcgctgcttg gttttagatc
     1141 acatcacata tatgactttt tctatatgat atatataaca agcagttatc actgaactta
     1201 atctaaaggt agaaagatag aggcattagt taaacgatta tcgttctcct acaagcgtag
     1261 tatttacata caataacaat actctgattt tggaaaaaga tgttatatat aatcgcatat
     1321 tacaacagca accattcttg caattaggat tcaaaaaaga gagcgtgtgc ttatcgctat
     1381 gttaacatca ataataataa gatcgaacaa caacttcaat agccagcatt tattttactt
     1441 aatctttgat gatggtaaat gaagaaagag tctgcagttt caataagcag ataaaccctt
     1501 gttgagttct aaattttgat cttcaacatt ctaggaagaa attattaata agaaggttat
     1561 ctattggttt aaaccaatat cattatgcag tataagcgaa cttttaagga tatgcataac
     1621 cacctatttt atagttaacc aactccatat tttttgttta ccaactttga actattgttt
     1681 tcatatcttt attcattcaa aaaattttat tactctgttc cctcatcatg aattaatcaa
     1741 t
//
LOCUS       DATAAS010000429         3381 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4782754, whole genome shotgun sequence.
ACCESSION   DATAAS010000429 DATAAS010000000
VERSION     DATAAS010000429.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3381
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4782754"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            230..2596
                     /locus_tag="VHF08_06830"
     CDS             230..2596
                     /locus_tag="VHF08_06830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018193003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDC48 family AAA ATPase"
                     /protein_id="HEX2068401.1"
                     /translation="MSSNIGDNRANNNTGNTSTENSNDNNNVHSTKKETLSLKVAEAE
                     HRDVGRKIVRIDPEIAERLNISTGDALELSSLGKKNTVLSWPAKDTDRGKGLIRIDGY
                     TRNKLDVGINDTVEIRKVETKDAKSITFAPTEPLRIVGAEQYLGEYLNGQLMTKGDTI
                     PLNVMGQRIDLVVISTNPSGPVIINDSTNIKVSEESAKAIQISKEGGVPSITYEDIGG
                     LGNAVERVREMIELPLRHPELFKRLGVEAPKGVLLHGPPGTGKTLLAKAIASETNSNF
                     YTIGGPEIMSKYYGESEEKLRNVFQQAEQNAPSIIFIDEIDSIAPKREEVSGEVERRI
                     VAQLLSLMDGMSTRGKVVVIGATNRINAIDPALRRPGRFDREIEIGVPDRNGRLEILQ
                     IHTRGMPIAKDVNLEKLADISHGFVGADLQALAKEAAIRALRRVLPEVDLSSESIPAD
                     TLRKIIVTMQDFMDVIKEMEPSAMREVFVEVPDVKWEDIGGLSTIKQELQEAVEWPLK
                     YQKLFTHADAVPPKGILLYGPPGTGKTLIAKAAANESEANFISIKGPELLSKWVGESE
                     KGVREVFRKARQAAPCIIFFDEIDAIAPRRGGDFGDSHVTERLISQLLTELDGLEILT
                     NVIVIGATNRPDIIDPALLRPGRFDRLLYVPPPDRDSRIQIIKIHTRKKPLADDVNVE
                     QLADHTEGYTGADIASLSSAAVMLALREYISKYKDQKEADNRVHELKIQMGHFEEAMK
                     KIRPLSTQELNIYKRISEQFGKPEIASSIGGGGSMERSGRSTPDSGIT"
     gene            complement(2639..2857)
                     /locus_tag="VHF08_06835"
     CDS             complement(2639..2857)
                     /locus_tag="VHF08_06835"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX2068402.1"
                     /translation="MSLGSRDDTSAQLLELSKSGTTKAKMKSSLSISNTQLRKILAEL
                     VDKGFLQFIEPQQQYITTHTGLKFLNRE"
BASE COUNT         1223 a          536 c          668 g          954 t
ORIGIN      
        1 aatcaatcct attgtagtgc caccacagct cgatcggtac tctaacaaaa aaaccactag
       61 cccataagta gagccgggtt ataggcattc tttattatgt aattactgat aacatctaca
      121 atagacaagg tgagattaag aatattcgta ggcagcatta acaatattta tcttaaataa
      181 tctttaacct ttaagtggca taataggcag ctaaaagttg gcgataagta tgtcttcaaa
      241 cataggtgat aatagagcta ataataatac aggaaatact agcaccgaaa acagcaatga
      301 taataataat gttcatagta ccaaaaaaga aacactaagt ctgaaagttg cagaagcaga
      361 acaccgcgat gtgggaagaa agattgtccg tattgatcca gaaatagctg aacgcctaaa
      421 tatatcaact ggggatgctt tagaattatc atcacttgga aagaaaaata ctgttcttag
      481 ctggcctgcg aaggatactg atagaggtaa agggttaatt cgcatcgatg gctatacaag
      541 aaacaagctt gatgttggaa ttaacgatac agtagaaatt agaaaagtgg aaacaaaaga
      601 tgccaagagt ataacatttg ctccaacaga acctcttaga atagtaggtg cagaacaata
      661 tctaggagaa tatctaaatg gacaattgat gactaaaggt gatactatac ctcttaatgt
      721 tatgggtcaa cgaatagatc ttgtagtaat ttctacgaat ccttctggtc cagttataat
      781 caatgactct acaaacatta aagtttctga agaaagtgct aaggcaatac agatatcaaa
      841 agaaggtgga gttccatcca ttacatatga agatattgga ggactaggaa atgcagttga
      901 aagagttaga gagatgatag aactgcctct aagacatcca gaattattca aaaggttagg
      961 agttgaagca cctaaaggtg ttcttctaca tggacctcca ggaacaggaa aaaccttgct
     1021 ggcaaaggcc atagctagtg aaacaaattc taacttctat actataggag gccctgaaat
     1081 aatgagcaaa tactatggag aatctgaaga gaaattaaga aacgtatttc aacaggcaga
     1141 acagaacgca ccatctatta ttttcataga tgagattgat tctattgccc caaagcgaga
     1201 agaagtatca ggtgaggttg agagaagaat agttgctcag ctgctatctt taatggatgg
     1261 tatgtctaca agaggaaaag tagtagtaat aggtgctaca aatagaatca acgctataga
     1321 ccccgcatta aggcgtcctg gaaggtttga tagagaaatt gaaattggtg ttccggacag
     1381 aaatggtcga ttagaaatct tacaaataca tacaagagga atgcccattg ccaaagatgt
     1441 taatttagaa aaacttgcag acatatccca tggatttgtt ggagctgatt tgcaagcact
     1501 tgctaaagaa gctgcaataa gagcactaag aagagtactt cctgaagttg atctatcttc
     1561 tgaaagcata cctgcagaca ctttaaggaa aattatagtc accatgcaag actttatgga
     1621 cgtaattaaa gagatggagc cttcagcaat gagagaagta tttgtagagg ttcccgacgt
     1681 aaaatgggaa gatatcggtg gattatcaac tataaaacaa gaacttcaag aagcggtgga
     1741 atggccccta aaatatcaaa aattatttac tcatgcagat gcagttcctc caaaaggtat
     1801 tctactctat ggccctccag gtacaggtaa aacattgata gcaaaagctg cagcaaatga
     1861 aagcgaagct aactttatta gcataaaagg accagagttg ctctcaaaat gggtaggtga
     1921 gtcagagaag ggtgtaaggg aagtatttag aaaagcaaga caagcagctc cttgcataat
     1981 attctttgac gaaatagatg ctatagcgcc cagaagagga ggagattttg gagattccca
     2041 cgtaactgaa agactcatca gtcaacttct gactgaattg gacggacttg aaatattaac
     2101 taatgtaata gttattggtg caaccaacag accagacatt attgatcctg cattgctaag
     2161 accgggtaga tttgatagat tactctatgt tccaccacct gatcgtgatt caagaataca
     2221 aataataaaa attcatacaa gaaagaagcc attggcagat gatgtcaatg tagaacagtt
     2281 agccgaccat acagaaggat atacgggtgc tgatattgca tcactatcat ctgcagcagt
     2341 tatgcttgct ttacgggaat acatatcaaa gtataaagac caaaaagaag cagataatcg
     2401 tgtacatgaa ttaaaaatac aaatgggtca ctttgaggaa gctatgaaga agattaggcc
     2461 attatcaact caggaattga atatatacaa aagaatatca gaacaatttg gaaagcctga
     2521 gattgcatct agcataggag gaggagggtc aatggaaaga agtggaagga gtactccaga
     2581 ttctggaata acttaaattt tttttatttc acaatgtcgt tgttagggag attgtttttt
     2641 attccctatt tagaaacttc aaccctgtgt gagttgtaat atattgctgt tgtggttcaa
     2701 taaactgcaa aaagccttta tctactagct ctgctagaat ttttcttaat tgagtattag
     2761 aaatagataa actactcttc atcttggctt ttgtagttcc gcttttagat aattctagta
     2821 gttgagcact tgtatcatct ctgcttccaa gggacatatt attatcttgt attattacta
     2881 tcacatcaat ttattagctt taacaatact ttctattatt atggaaaaag gctgagacca
     2941 ttgcaattga taagattatt ggtataacag aatttattga agacacaatt agagagaaga
     3001 tagaccagga aaaagatcat caaattcaaa cataattgga ttcacatact tcttgacgtt
     3061 ctttattttg ttcattttat ttttcttcag atttcattat cagtcgatgt gcattgatat
     3121 aattaagttt taacttgtca ttataacatt tcagttgtag taaaattatt gaataggtcg
     3181 actagcaatc agaaaagata aatgaagata cctctatatc tctactacac ccatcaaaac
     3241 aaatttcgtg cttaaaatta tcaatccggc gataacggtg attcttggga tattatacat
     3301 atacttggaa tctatatatc gaaaacttgg ttattaagaa ttgaaacgaa tacctgtaag
     3361 taattagctt aaatggtgtt t
//
LOCUS       DATAAS010000430         3126 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4788334, whole genome shotgun sequence.
ACCESSION   DATAAS010000430 DATAAS010000000
VERSION     DATAAS010000430.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3126)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3126)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3126
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4788334"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..402)
                     /locus_tag="VHF08_06840"
     CDS             complement(<1..402)
                     /locus_tag="VHF08_06840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068403.1"
                     /translation="MRKGVKISITAAIVIIIGAGAYYLASPLFISTEVNEPLPTSAVE
                     SEAYQKFITMSEEEKLDNAKQMSPEERDEIMTIASKINNSVNESMDQIQQQQETQNTI
                     TTASKLRTGSFVGVGDGIHNAEGEAKIIPFQD"
     gene            690..854
                     /locus_tag="VHF08_06845"
     CDS             690..854
                     /locus_tag="VHF08_06845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068404.1"
                     /translation="MVKLVPECTKCGSPVTDSVEPEVEEHGQVKRGQYVNSIWICNDC
                     IESEKEQEKL"
     gene            1089..1223
                     /locus_tag="VHF08_06850"
     CDS             1089..1223
                     /locus_tag="VHF08_06850"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068405.1"
                     /translation="MIRKVIMITFFYNIWIKHPLVATMSKDENNAFRKQGTFTGKLAF
                     "
     gene            complement(1229..1864)
                     /locus_tag="VHF08_06855"
     CDS             complement(1229..1864)
                     /locus_tag="VHF08_06855"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF015325.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEX2068406.1"
                     /translation="MHREGTVNVLGVAGSMREQSYSTRGLKMVLEETKKYNAESYMLE
                     VRKINLPLYDPSEITSDNSSSNNNNVLERITTTLKWADIFVLASPDYHGSMSGGMKNF
                     LDYFWEDFAGKTFGYIVASHEKGLTVADQMRTAVRQCYGWSMPYNISINGEKDFDSKG
                     NLINSALAKRIKMLARDLVTYGTLIRRQFLEDVANQEISDTFATYYRGYYN"
     gene            complement(2050..2730)
                     /locus_tag="VHF08_06860"
     CDS             complement(2050..2730)
                     /locus_tag="VHF08_06860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068407.1"
                     /translation="MPITTKLENIAEGFSEPKKKLLYYLKVMQQAGLEELANVMKVSR
                     MAVHKHLGLLQQRGLVEAVETRGHVGRPRMVYQLTSQSKTVFPKSYSAIATHALDFIE
                     RNMGKEAVEKVLRERQSELFDQYYKRLKGLDFDKQVKELARIRDEEGYIAESKKESKS
                     GGGGKYVLLEYNCPIIHIAEKHWEACSTETELFEKLLGADIETTHRAAKGDLVCKFII
                     KEIKEGFL"
BASE COUNT          949 a          564 c          506 g         1107 t
ORIGIN      
        1 atcttggaat ggaattattt ttgcctctcc ttctgcatta tgtatcccat ctccaacacc
       61 aacaaaagag cctgttctca atttactagc agttgttatt gtattctgtg tttcttgctg
      121 ttgttgtatt tgatccatag attcattgac actattattt attttagaag caatagtcat
      181 tatctcgtct ctttcttctg ggctcatctg ttttgcatta tctaattttt cttcttcact
      241 cattgtgata aatttttggt acgcttccga ttctactgca cttgtgggta ggggctcatt
      301 aacttcagtt gaaataaaaa gcggtgaagc aagataataa gcgcctgcgc ctattattat
      361 aacgattgca gctgtaatgc taattttgac acctttgcgc acaggaaata ttgtcgtaag
      421 gtttctagtt aaagtttttt gttttgatat taagaaagtt tctgtttttc tgtgggcctt
      481 gcattgagag gcaattggac gctacttatt caaatacagt gcaaatcatg aaactcaaaa
      541 tgcttttaac aataccatgt atcaatctga gaagattcct ataaggttca atgcaatgtc
      601 gcatgttatt ttttgcttaa taatgttgtt gattggtgta tagtgtatat atacatagat
      661 caacaatata cacatagaga tgtgaatatt tggtaaaatt agtaccagaa tgcactaaat
      721 gtggttcacc tgttactgat tcagtagaac ctgaagtcga agaacatggc caggtaaaga
      781 gaggtcaata tgtcaatagc atttggatat gtaatgattg tatagaaagt gaaaaagagc
      841 aggaaaaatt ataatcctta gaaccgcaat gtagtagtaa taataatgat caatatgaga
      901 acattagaat ccaagtcaat ctaatgtatc ttctaatact ctgtagccgg cttcatcgga
      961 attatagtag gctgtttttt tatctgaaaa tatatgcatt ctttgctacc agagctacgt
     1021 tactgcatgt ggtagatctt ttgattctga tagtgttaaa atgttaaagt ctcatattag
     1081 aatggaggat gatcagaaaa gttattatga tcacattttt ttacaacatc tggatcaaac
     1141 atccactagt ggcgacaatg tccaaagatg agaataatgc ttttcgcaag caaggaacat
     1201 ttactggaaa acttgctttc taacttttct agttataata gcctctgtaa tatgtagcaa
     1261 aggtatctga tatttcctga tttgctacat cctctaaaaa ctgtcgtcta attaatgtac
     1321 cataagtcac taagtcgcgt gcaagcatct taattctttt tgccaatgcc gaattaatta
     1381 aatttccttt tgaatcaaag tctttttctc catttattga tatattataa ggcatactcc
     1441 atccatagca ttgacgaaca gctgtacgca tctgatctgc aacggtcagc cctttttcat
     1501 gtgatgctac aatatatcca aatgtttttc cagcaaagtc ttcccagaaa tagtcaagaa
     1561 agtttttcat tccgccagac atagagccat ggtaatctgg tgatgctaat acaaatatat
     1621 cagcccactt caaagttgtt gtaattcttt ctaaaacatt gttattattt gaagaagagt
     1681 tatctgatgt gatttcactt gggtcgtaga gcgggagatt tattttccgt acctcaagca
     1741 tatatgattc cgcattgtat ttttttgttt cttctaatac catttttaag ccacgggtac
     1801 tgtaggactg ttctcgcata ctaccagcaa cacctaatac atttactgta ccttcccgat
     1861 gcatacttgc ttgattatca ttttgtgata gttttaaaga ttgaatttgg gatctattga
     1921 tgttaatcat aaatatatat gaaaagcctt atttataaat aaagacgttt acaaattata
     1981 caaaatcaat aagacaaatg cctcatctat ttgagaaaat atctttctta cctctaagtt
     2041 agttcggctt cataggaagc cttcttttat ttctttgatt ataaatttac aaaccaagtc
     2101 tcctttggca gctctatgtg ttgtttctat gtcagctcca agaagttttt caaataattc
     2161 agtttcagta gaacatgctt cccaatgttt ttcagctata tgtattatcg gacagttgta
     2221 ttctaaaagg acatattttc caccaccacc actctttgac tccttctttg attcagcaat
     2281 atatccttcc tcatctctaa ttctagctaa ttccttgact tgtttatcaa aatccaaacc
     2341 cttaagacgc ttataatatt gatcgaaaag ttcgctctga cgttcacgca gaaccttttc
     2401 gaccgcttct ttacccatat ttctttcaat aaaatcaaga gcatgtgttg caattgcact
     2461 gtatgatttt gggaaaacag ttttgctttg acttgttagt tgatacacca ttcttggcct
     2521 gccaacatgt ccccttgttt caacagcttc tactagaccc ctctgttgta gaagaccaag
     2581 atgcttgtga actgccattc ttgacacctt cataacattc gccaattcct caagtcctgc
     2641 ttgctgcata actttaagat aataaagcag cttctttttt ggttcactaa atccctcagc
     2701 aatattttct aatttagttg taataggcat ctaatacaca gaaacatata gtattactca
     2761 ttcataaatc atgaggttta caaatcaatt atgattaact ttctactgaa agttttcatc
     2821 tcttgcataa tacagttcag ctatcaggaa tttatacaat tagtaaatct acaagttata
     2881 atatagatca ataaatcatc tgtgagtagg tatatagaaa ccattaagaa agagatctta
     2941 agaggcacta tgttgttgct gaagtacata gatttggagg tatcgaaatt tgttaaagca
     3001 aaagagaaat gatacttaca aatggtgatc gtttagccta cttaccaggt ccaataagca
     3061 tgagaaatga tcttgttaat cctgacgtgt actactcatc atgttcttcc acaatcagga
     3121 tgggtt
//
LOCUS       DATAAS010000431         3601 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1016825, whole genome shotgun sequence.
ACCESSION   DATAAS010000431 DATAAS010000000
VERSION     DATAAS010000431.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3601
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1016825"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(748..1389)
                     /locus_tag="VHF08_06865"
     CDS             complement(748..1389)
                     /locus_tag="VHF08_06865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEX2068408.1"
                     /translation="MSDPKDILSRIFQKDDTTRPSQLLYPKEEKEEDVLIPEVDDVLQ
                     TNIFNIMINRRSQRKFESNKQVEEWKIEMIFAAADTAPTAGGFQGFEIYHVKSQEIKL
                     KLVQAANKQPYVNAPVVLVFCMNPTRVEMNFPQHILKKFSLQDATLAAAYSQLAAHAL
                     GLSSVWIGMIDEEKVMQALGINLVPSSILCLGYPQKILQPKPKRNLLELIHDV"
     gene            complement(1602..2624)
                     /locus_tag="VHF08_06870"
     CDS             complement(1602..2624)
                     /locus_tag="VHF08_06870"
                     /inference="COORDINATES: protein motif:HMM:NF024989.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEX2068409.1"
                     /translation="MKAAVFKTPGLENLEIKEYSDPEITEQEILIRVKVAGINPIDYF
                     VVSGKHGIKSGSPLEAKPLPHIPGAEISGVVERVGNNVNRVNEGDRVVAYSRLFDGSC
                     DLCLNSSEMLCKNGGLISVISNGGFAEYIAVPEQNVFKIPDDMDWDLAASLSVTALTP
                     FHALKEASLKINESLLVFGASGNTGMLAIQFAKKMGAKVIAVTTKNWIKEFGADHITT
                     FDKVIEEVKEFTQGNMAAVVLNALGADTWQKSLDAVAINGRWVTFGVLTGAEVKLNLQ
                     SLYYKQIKLIGTTGGSRKEFKEIIDNSKGLKIKVWKKFKLEEAREALQALFEKEREGR
                     ILLNIS"
     gene            complement(2860..3312)
                     /locus_tag="VHF08_06875"
     CDS             complement(2860..3312)
                     /locus_tag="VHF08_06875"
                     /EC_number="1.-.-.-"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: protein motif:HMM:NF024304.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEX2068410.1"
                     /translation="MKTNSINNNKELKFTKNEKKFLLENEACRVATTSYNNTPHVTPV
                     SYIYEDGLFFFATDYDTRKYKNLKVNKNIALVVDVYNSSVENKAVVIQGTVDIIERGE
                     EFKKLYEKFEKKFEWVRKDSWKEGEAPFIKVKPFSKVSWGLEKEEALD"
     gene            complement(3326..>3601)
                     /locus_tag="VHF08_06880"
     CDS             complement(3326..>3601)
                     /locus_tag="VHF08_06880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068411.1"
                     /translation="CDVSILATMKALFYHSPKDVQIDDKHPSNIINSEDVKSRVTSTV
                     IYGSDLHLYHDTIHVMQPGQTLRHKFMVIGVVVVEGPEVHEVEKWGN"
BASE COUNT         1100 a          648 c          533 g         1320 t
ORIGIN      
        1 aagccagata tagaaataat aaatataagc ataatttgct tataataata cgtcgagaaa
       61 aatagttatc ccactattta gtatggataa tcacaatatc aacaaataca attagtatag
      121 ttattgtgat agcaataaaa gcataattgg tgtaataata gtgatgtata ttacccgcaa
      181 cagagcagta tgtgagcaaa aaagttctat cagataagat tggtgaatgt tgatgatgat
      241 ggtggtggtg ccatctctta tcacttcttt tgatatatcg gcaataatta tcctatactc
      301 agcagtacaa gaaattaaca cagatagcag gttggtgtaa tgtaagacgg acattacagc
      361 atggttagat tgctcaagtg gtgattggag agatgtcggt caacttgtct caagcagttc
      421 tgctcaggtc taacctacag agaccaacaa taaagtacag agtcggcaag tttcttttct
      481 aataatgtca tctgcatcaa tgtctaacga aatttcttcg ataatttttc tcatagtttg
      541 tttattgcat ttttaaagta aatcaaataa gaattcaatg gttttgcaac atgactactc
      601 aaacgattga gtcaatcgtg ttgattaagc aatagatatg gttctttctg ctggaaatat
      661 atttcaatat atatatgcat atatatagat atacattcga cctcttaatc actattatta
      721 atagtgaaaa ttactgaaat ttaaaaatta aacatcatgg attaattcta atagattcct
      781 ctttggttta ggttgaagta tcttctgggg atatcctaag caaagaattg atgaaggtac
      841 aagatttatt cctagagctt gcataacttt ttcttcatct atcataccta tccatacaga
      901 acttaaacct aaagcatgtg ctgcaagctg ggaatacgcc gctgcaagag tagcatcttg
      961 caaagaaaat ttcttcagga tatgctgcgg aaaattcatt tctactcttg ttggattcat
     1021 acaaaaaact aaaacaactg gagcatttac atatggctgt ttgttagctg cttggacaag
     1081 cttcaatttg atttcttggc tttttacatg atagatctca aaaccttgaa agcctccagc
     1141 agtaggagca gtatccgctg cagcaaatat catttcaatt ttccattctt ctacctgctt
     1201 attactttca aattttcttt gtgaccttct attgatcata atgttaaaga tattggtttg
     1261 taggacatcg tctacctcag gaattaatac atcttcttcc ttttcttctt ttggatatag
     1321 tagttggcta ggacgggtag tatcatcttt ttgaaagatt ctagagagaa tatctttagg
     1381 atcagacata tccaagcaat gtattatgta tggaatctta taatatgtta tgctatttaa
     1441 tcaataatac tccatagatg aaatgtcact aggttagata atttgttgtt gcatgtttta
     1501 ttttgtcttt actagtgtat agatagattc acagtatata tattgattga aattgatatt
     1561 ttatctgcaa ttatcataaa ctcgacttaa agaacatata tctaactaat gtttaacaaa
     1621 atcctgcctt ccctttcttt ttcaaataat gcttgtaaag cttctcttgc ttcttcaagt
     1681 ttgaattttt tccatacttt aattttcaat cctttggaat tatcgataat ttctttgaat
     1741 tcttttctac tacctccagt ggtgcctatt aactttattt gtttataata caatgattga
     1801 agattcaatt tgacctcagc accagtcagc actccaaatg taacccacct tccattaata
     1861 gcaacagcat ccaaactttt ctgccatgtg tcagcaccta gtgcgtttaa aacaactgct
     1921 gccatattac cttgagtaaa ttccttgact tcttctataa ctttgtcaaa agtggtgata
     1981 tgatctgctc caaattcctt tatccagttc ttagtagtaa ctgcaataac ttttgctccc
     2041 attttcttag caaattgaat tgctagcata cctgtattcc ctgatgcacc aaacaccaac
     2101 aatgactcat ttatttttag agaagcttcc ttcaacgcat gaaatggtgt taatgcagtc
     2161 acagataaac ttgcagccaa atcccaatcc atatcatctg gtattttaaa gacattctgt
     2221 tctggaactg caatatactc agcaaagccg ccattactga tgacgctaat taatcctcca
     2281 tttttgcaaa gcatttcaga actattcaga cataaatcac atgaaccatc aaatagtctg
     2341 ctatatgcga ctaccctatc accttcattt actctgttta cattatttcc tactctctca
     2401 actactccgc ttatttctgc tcctggtata tgtggtagtg gttttgcttc aaggggtgac
     2461 ccagacttta taccgtgttt tccagaaact acaaaatagt ctattgggtt tataccagcc
     2521 actttaactc ttattagtat ctcttgttct gttatttctg gatctgaata ttctttaatc
     2581 tctaaatttt ctaaacctgg tgttttaaaa acagcagctt tcatttttag aagataattt
     2641 ttattgtatt taatattatc ctgatctaaa tttgttttct tcccttttta gtgtacagaa
     2701 aatgattact gcaaacatca tcaaatgtca tccaaaggta tttgagccat aatttcacga
     2761 gttcgaagca acagtggaag ttcatcctat aatggttttg atgatcttaa gaggactttt
     2821 cactatctag aaaaggagta aatagtacta caataataac tagtctaatg cttcttcttt
     2881 ctctaatccc cagcttacct tactaaaggg ttttactttt ataaatggag cttctccttc
     2941 tttccatgaa tcttttctta cccattcaaa tttcttttca aatttttcat agagcttttt
     3001 gaattcttct cctctttcaa taatatctac agtaccttgt attactactg ctttattttc
     3061 aactgatgag ttgtaaacat ccactactag tgcaatattt ttgttgactt tgaggttctt
     3121 gtatttcctt gtatcataat ctgtagcaaa gaagaataaa ccatcttcat agatatatga
     3181 aacaggtgta acgtgtggag tattattgta tgatgtggta gcaactctgc atgcttcatt
     3241 ttctaaaagg aatttctttt cgtttttagt aaatttcaat tctttgttgt tattaatact
     3301 attagtcttc ataatttcca ttaaactagt taccccactt ttctacttca tgtacttctg
     3361 gtccttctac tactactact ccaattacca taaatttgtg tctcaatgtt tgtcctggtt
     3421 gcatcacatg tatagtatca tgataaagat gcaaatcaga accatatatg acagttgaag
     3481 taacacgtga ttttacgtct tctgaattta taatattgga aggatgtttg tcatctatct
     3541 gaacatcttt cggactatga tagaataatg ctttcatagt tgctaatatt gaaacgtcac
     3601 a
//
LOCUS       DATAAS010000432         4893 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4789294, whole genome shotgun sequence.
ACCESSION   DATAAS010000432 DATAAS010000000
VERSION     DATAAS010000432.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4893)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4893)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4893
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4789294"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..429)
                     /locus_tag="VHF08_06885"
     CDS             complement(<1..429)
                     /locus_tag="VHF08_06885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068412.1"
                     /translation="MAEQRPEEEEGGRKKIEDIIIRIPADGNEKEPTSIVEGNLTLPN
                     NNNNNRNTTKVGIVIFAHGSGSSRHSPRNQFVSQALNNDGLATLLVDLLTPEEEETDI
                     RMQKMQCKVPGLVLNKFNIKLLSRRLLAIIDWVISSLLTTT"
     gene            739..1437
                     /locus_tag="VHF08_06890"
     CDS             739..1437
                     /locus_tag="VHF08_06890"
                     /inference="COORDINATES: protein motif:HMM:NF012383.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyltransferase family protein"
                     /protein_id="HEX2068413.1"
                     /translation="MSSKFQVRLKDRANAANILGEALKDVIKKEQERKDHRIVLGIPR
                     GGVIVGDIIAKKLSCEFDIIIPRKLHAPHNEELAIGAVMEDGTTYLNDELIRELEISQ
                     EYIEKEKIEQIEEIKRRYSLYQNVERRREYQFEDKTVILADDGAATGATIIAAARWIK
                     KKKTPNNPKSNLIIAVPVAPKPTKELLRRESDHVEVILSPSTFNFKSVGQYYQSFEPV
                     TDEQVINIMERNRG"
     gene            2006..2275
                     /locus_tag="VHF08_06895"
     CDS             2006..2275
                     /locus_tag="VHF08_06895"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068414.1"
                     /translation="MTKEEEKEEEQENNILNKEIQSWSSFEYAMREEDRILFNKMLSE
                     CQKEEYTKASDAKGKCNSTESVFMTLIFQQQKMISKLIDELSKDK"
     gene            complement(2315..2449)
                     /locus_tag="VHF08_06900"
     CDS             complement(2315..2449)
                     /locus_tag="VHF08_06900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068415.1"
                     /translation="MIQKCTTKTFSDNRVRSYISKHLITPEELADDPDSNAASSIAEF
                     "
     gene            complement(2740..3690)
                     /locus_tag="VHF08_06905"
     CDS             complement(2740..3690)
                     /locus_tag="VHF08_06905"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HEX2068416.1"
                     /translation="MQFVFIVIALFVLSLMFSSIYVTEDVLSSSSLSSFTFVKKIPQE
                     GTSEIQIFEPEGIDVDSEDNVYVNDIDPNRILKFSKNGTYVLSWGSTGSGNGQFNHPH
                     GNEVDSQGNVYITDQDNQRIQKFTSNGTFITKWGTPGTGNGQFMHPHGVAVDSKGNVF
                     VSDRDNANIQKFTSNGTFITKWGSEGSGDGQFIQPWDVAVDSDDIVYVPDYGNNRTQK
                     FTNNGEFIAKWGTEGEGNGQFKQPAVIAFDSDDRMYVTDSENHRVQIFSKNGTFITKW
                     GNEGSGDGQFLKPESITVDSLGRVYVADTVNNNVQLFISN"
     gene            4005..4178
                     /locus_tag="VHF08_06910"
     CDS             4005..4178
                     /locus_tag="VHF08_06910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068417.1"
                     /translation="MVLVGLADYYFLGFTPEANGQSFVPPEFDPVDPIDMMRMTTGNM
                     MFIPYKMEFWLCQ"
     gene            4163..4336
                     /locus_tag="VHF08_06915"
     CDS             4163..4336
                     /locus_tag="VHF08_06915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068418.1"
                     /translation="MAMPMMCTTPAEIIESAASMMGGNSTNGNNTTQAIKELAPGEVG
                     IGQNMTGQELYKP"
     gene            4471..>4893
                     /locus_tag="VHF08_06920"
     CDS             4471..>4893
                     /locus_tag="VHF08_06920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068419.1"
                     /translation="MGRNKMIYATELPELSMSGVVTKSDIVLSPTFESNFTHNPWAAN
                     LCDNSSQTTRPIESSVQSPKYVKISSQQSSSALRYQMRDLYNRRKRLADWIKRVNEDV
                     DEPDRTDILKLIEQMQDKERAVLWIVRCITALITLRTQL"
BASE COUNT         1654 a          827 c          818 g         1594 t
ORIGIN      
        1 tgttgttgtt aataatgatg atattaccca atcaattatt gctaacagac gtcttgaaag
       61 caatttgatg ttaaatttat tcaaaacaag tcccgggact ttacattgca ttttctgcat
      121 tctaatgtca gtttcttctt cttccggtgt gagaagatct actagcaagg ttgcaagacc
      181 atcattattg agagcctgag aaacaaattg attccttgga ctatgacggc tacttccact
      241 tccatgagca aagataacta ttcctacttt tgttgtattt ctattattat tattattatt
      301 aggaagagtt agatttcctt caactattga tgttggctct ttttcatttc catctgctgg
      361 tattctaatt attatgtctt ctattttctt ccttcctcct tcttcctctt ctggtcgttg
      421 ctcagccata aattactagt atatactaat gtttactatc caaaatagtc tttgttatcc
      481 tttaaaatta agttcagatt gtgctcaaac cttcatttta acagtgtgtg caatgggttt
      541 ggtttggata atatatacac tggatagcat cattttttct gcaaatgtct tcttaggtat
      601 ctccttcttg tgttcaatct aatgtgttct tccttctcct ttgaaatgtc aacttaggtt
      661 tatttatata tccaagaata cggtcttaat agcaacaaca tcctcaatca ttggtgacac
      721 ataatcatat ttgataaaat tagcagcaaa ttccaagtaa ggcttaagga cagagcaaat
      781 gcagcaaata tcttaggtga agcattaaag gatgtaataa aaaaggaaca ggaaagaaaa
      841 gatcatagaa tagtattagg aattccgcgt ggaggagtga tagttggaga tattatagct
      901 aagaagttat cctgtgaatt tgatattatc ataccaagaa aactacatgc tccacataat
      961 gaagaacttg ctataggtgc agtaatggaa gatggcacta cttatcttaa tgatgaactc
     1021 ataagagaat tggagatatc gcaagaatat attgaaaaag aaaagataga gcaaatagag
     1081 gagataaagc gtagatattc gttataccaa aatgttgaaa gaagaagaga ataccaattc
     1141 gaagacaaga cggtgatatt agcagatgat ggagctgcta ctggtgctac aattattgct
     1201 gctgctagat ggataaaaaa gaagaagacc cctaacaatc caaaaagcaa tttgataatt
     1261 gctgttcctg tagctcctaa accaacaaaa gaattgttaa gaagagaatc tgaccatgtt
     1321 gaagtaatat taagtccctc tacttttaat tttaaatcag taggacaata ctaccagagt
     1381 tttgaacctg ttacagatga acaagttatt aatattatgg aaaggaatag aggttaatta
     1441 aaaaccttgt tatattcagc cggaaagagg ataacaacaa tcatatacac atatctactg
     1501 ttactcttta ttcttcaata aattaatatt attattattt tgctccatta ttgccgcaat
     1561 tggtggaaat ggttctgtca ataatatttt aacttctatt aacttgtaca ttatattatt
     1621 aatggcagta tgaattaaaa tatttacata atttataata tttgattcaa tataaagtga
     1681 gtattgcttt tatttggaaa tatcatgcta tggacatgca taaagtatta gccataattg
     1741 gagcaataat cactggcgga ttaggaataa cattacttaa cacagcacaa gaagcatcag
     1801 ctgcaatgtc tacgaactaa ccttccttct ttttttatta actatattac tgcttttgag
     1861 ctattcacac attaaaaatt gacacaaatg taaattcaat aacttgaatt attggaatcg
     1921 atatatacct accctctctg tcccagattg gtgttttagt tcttaaatta acctatcaat
     1981 cattgagcaa taggagcaat acacaatgac aaaggaagaa gaaaaagaag aagaacaaga
     2041 aaataacata cttaataagg aaatacaatc ttggagcagt tttgaatatg ccatgaggga
     2101 ggaagacaga attctattca ataagatgtt aagtgaatgt caaaaagaag aatatactaa
     2161 agcatctgac gctaaaggca aatgcaactc tactgaatcc gtgtttatga ctttgatatt
     2221 tcagcagcag aaaatgatta gtaaattaat tgatgaactt tcaaaagata aataaataaa
     2281 ataaaaatat ttatttgcag aatggatctt gaggttaaaa ctctgctata gatgatgccg
     2341 cgttagagtc aggatcgtca gctagttctt caggtgtgat aagatgtttg gagatgtatg
     2401 aacgcactct gttgtctgaa aaggttttag tcgtgcattt ctgtatcata aattgttgta
     2461 ttgcattgtc aaaattcgat tacaagtttt gtaattcttt tccaatttag ctacatattt
     2521 atcagatcgc cttgcaacaa attctattat atatatgaca ataatttagt gatactcatt
     2581 acgaacacat gatcataata cattggtttt ggggttagca ggtttttagt tgcttatgta
     2641 aattagtaaa tttaaataaa ttatgagaag tcctcaaaaa ccttgaactg cctgccctgt
     2701 tgtaatatca tacttttgtt atgattttat aacaagaatt taattagaaa taaacaattg
     2761 tacattattg ttgaccgtat ctgctacata cacacgacct aacgaatcta cagtaatgct
     2821 ctctggcttt aaaaattgtc cgtcaccact gccttcatta ccccacttgg tgataaaagt
     2881 gccattcttt gaaaagatct ggacacgatg gttttcagaa tcagttacat acatgcgatc
     2941 atcagagtca aatgctataa cagctggctg cttaaactgt ccattacctt ctccttctgt
     3001 cccccatttt gcaataaact ctccattatt tgtgaatttt tgtgttcggt tatttccata
     3061 atctggtaca tacacgatat catcagaatc tactgctaca tcccatggtt gaataaattg
     3121 tccgtcacca ctaccttcag aaccccattt tgttataaaa gtaccattgc ttgtaaactt
     3181 ctgtatattt gcattgtctc tatcacttac aaagacattt cccttagagt ccacagcaac
     3241 tccatgtgga tgcataaatt gtccattccc agttcctgga gtaccccatt ttgttataaa
     3301 agtaccattg cttgtaaact tctggatacg ttggttatcc tggtctgtta tatacacatt
     3361 accttgggaa tctacttcat taccatgtgg atggttaaac tgtccattac ctgaacctgt
     3421 agaaccccaa ctcaaaacat aagtaccatt cttggagaat ttgagtatac gattaggatc
     3481 tatatcattt acataaacat tatcttcaga atcaacatcg attccttctg gttcgaaaat
     3541 ctgaatttct gatgtgcctt cttgtggtat ctttttgaca aaggtaaagc tagataaaga
     3601 agaagaagat aatacatctt ctgttacata gatagatgag aacatcaagc taagaacaaa
     3661 taaggcaata acaataaata caaactgcaa cttatagatc acaatctcta actgcaagtc
     3721 taaccaagta tattattaat ttaactggta taattgggcc tcttttcact taattactcc
     3781 tttctcatca taatcttttt gttatacata tcaacaaaca aattcatcca attgattata
     3841 tgttgtaact tatacttgtg ttttctgcat agaaaataat catcaaaacc ttcagttcta
     3901 tccttgatta aaatcgtgtt aaatattatg agcacttcat aaaactaaat atttcatact
     3961 atcgtcttcg tatatttact aaactatata cgaaatctat atacgtggta ttggttggac
     4021 tcgctgatta ttattttctg ggttttactc cagaagcgaa tggacagtca tttgttcctc
     4081 ccgaatttga tccggttgac ccgatagata tgatgagaat gacaacaggc aatatgatgt
     4141 tcatccctta caagatggag ttttggctat gccaatgatg tgcaccacac ctgctgagat
     4201 aatcgaatca gcagccagta tgatgggtgg taatagtact aatggtaata atacaaccca
     4261 agcgataaag gagttggcac cgggagaagt aggtattgga caaaatatga cagggcagga
     4321 attgtacaag ccttgaactt ggttgtttgt ataccttcaa tgatgaacaa cacgatggta
     4381 atgagtaata ctcaagataa tcttacgggc aatatgaaag atggcatatt catgcgataa
     4441 ttaaagcgtc ataaggcagt aatagataat atgggaagga ataaaatgat ttatgcaaca
     4501 gagcttcctg aactgtcaat gtcaggtgtt gttactaaat ctgacattgt tctgagccca
     4561 acatttgagt caaattttac tcataacccg tgggccgcaa atttgtgcga taacagttca
     4621 caaacgaccc ggcccattga atcttcagtt caaagtccaa aatatgttaa aatatcctct
     4681 cagcaatcat caagtgcatt acggtaccaa atgagagatc tatacaatag acgaaaaaga
     4741 ctggcagatt ggattaaaag agtaaatgaa gatgttgatg agcctgatag aacagatatc
     4801 ttaaaactca ttgaacaaat gcaggataaa gaaagagctg tactatggat agttcgttgt
     4861 atcacagctc tcattacatt aagaacacag ctt
//
LOCUS       DATAAS010000433         2854 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2089880, whole genome shotgun sequence.
ACCESSION   DATAAS010000433 DATAAS010000000
VERSION     DATAAS010000433.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2854)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2854)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2854
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2089880"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            309..1163
                     /locus_tag="VHF08_06925"
     CDS             309..1163
                     /locus_tag="VHF08_06925"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEX2068420.1"
                     /translation="MISILDANNKIKTGTPLSILRPTSSTNIIMTTLGFLTTLALVII
                     FVSQIDTASAQTTPIQNTNANVTNSNSTLSVSGTAFTKVKPDRVVISIGVETTNKTAK
                     TSLAANSESMNKIISALRNLGVKENETSTSSFTISPNYNYTESGTILNITGFTVTNSV
                     LIDSSNLANVSTWIDAAVASGANSINSIDFRISNNKLEDTKNMLIKDAIANAREKADI
                     ASPELGLKVIGVKSITVGDFDYIQPPQPFMEKRFDAAGAGAATATTPILAGEQEVSAS
                     VSIVFLIG"
     gene            1335..1739
                     /locus_tag="VHF08_06930"
     CDS             1335..1739
                     /locus_tag="VHF08_06930"
                     /inference="COORDINATES: protein motif:HMM:NF017987.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChuX/HutX family heme-like substrate-binding
                     protein"
                     /protein_id="HEX2068421.1"
                     /translation="MKYNLAYQLITDILSQKDILLSVNSGSGICEAKVEEGLSFRIKE
                     KWATIGDEDRPWHIHLNMDEVIEAKFVKEPRSDGKQSYSIRFFNSKGNLAMRANFTKM
                     YDSSGNPLKEKVAKFDEIASKYGSKESISLSG"
BASE COUNT          974 a          456 c          460 g          964 t
ORIGIN      
        1 gaatcaggtc aggcttagtt attaattagg aagagagagg ggaagatttc ctcctttgca
       61 gatatacctt tcactttgta atatttgata gaagtatgca tttgtctagt tagtaagttt
      121 ggtagtatac attgtgctat cactcgaaaa ttagaattct tatcttacta tagaacagag
      181 ttggtttaat tttgtcaaat tcaattagta cgtattgact gcgatatcgt atcggttctt
      241 ttatcatatc aagtcattat ataaatctat atgtatatat atatgctaaa ataattagaa
      301 aaatctatat gatatcgatt ctggacgcaa ataataaaat taaaacagga acgcccttat
      361 ctattcttcg tccaacttct tctactaata ttattatgac taccttagga ttcctgacta
      421 cattagcatt ggtcattatt tttgtgtcac aaattgatac tgcatcagct cagaccacgc
      481 caattcaaaa tacaaacgct aatgttacga atagcaatag cacattatct gtttctggaa
      541 ctgcatttac aaaagtaaag cctgatagag tagtcatttc aataggagtc gaaacaacaa
      601 acaaaacagc aaaaacatct ctagctgcaa attctgaatc aatgaataag attatttctg
      661 cattaagaaa tttaggtgta aaagaaaatg aaactagtac ttcttcattt actatatcac
      721 ctaactacaa ttatacagaa tcaggaacta tactgaatat aacaggattt actgtaacca
      781 attctgtact gattgatagc tcaaatctag ccaatgtatc gacttggatt gatgcagccg
      841 tagcatcagg agccaatagt ataaacagca ttgattttag aatatccaac aacaaattag
      901 aagatactaa aaatatgctt attaaggatg caattgccaa tgcaagagag aaagctgata
      961 ttgcatctcc agagcttgga ttaaaagtaa ttggagttaa atcaataact gttggtgatt
     1021 ttgactatat tcaacctcca caaccattta tggaaaagag atttgatgca gctggtgctg
     1081 gtgccgccac cgctacaaca cctattcttg ccggagaaca agaggtatct gctagtgtaa
     1141 gtattgtttt tcttattggt tgattcgcaa cattattagt gttagtgatc aactcagcat
     1201 tacttttttt gagttggatt gcatctataa agcatccata aatccttctc ctttaagaat
     1261 ctgattttat ggatatttct tatacttttt gcttataaaa tcatttaaaa ccactatatt
     1321 ctaatatata aggcatgaaa tataatcttg cttatcagtt aattacagac atcttatctc
     1381 agaaagatat acttctatca gttaatagcg gaagtggaat atgcgaagct aaagtggaag
     1441 aaggcctatc ttttaggatc aaagaaaaat gggcaacaat tggggatgaa gatagaccat
     1501 ggcatattca ccttaatatg gatgaggtta tagaagcaaa gtttgtaaaa gaacctagat
     1561 ctgatgggaa acaaagctat agtataagat tctttaattc aaaaggcaat ttggcaatgc
     1621 gtgcaaattt taccaaaatg tatgacagta gtggaaaccc attaaaggaa aaagttgcca
     1681 agtttgacga aatagcttca aaatatggaa gcaaagaatc aatttcacta agcggatgat
     1741 aaattgttat ttactcgttt gctatcgtat tttaacacaa atgtctgaaa tttcagtgcc
     1801 ataaatggca tctagaatga aaatatttta agattaagat ctaatacttt tcgctttcaa
     1861 ttttcaatac ttattggtat catgcaagag aacatgtcac ttgactgtct gtaatgtctt
     1921 aattgtaatg taattcttag attcccctaa tgcaaatcca attccattga tgatacaaac
     1981 tgtcgtttct aaatcaaacc acatttgtat ctattagcag ttttgcagca gttcacatat
     2041 taaatatttt tgtaattcct acaaccaaag agaataggtg atagttatta ctacttttat
     2101 gaatatatat ttctgagcta agttcgacta cgcctaatac tataggtagt agtaacaatg
     2161 tttagttttt ctagtcttta tccttacttt caaatactta tagagtatga tcaatgtcat
     2221 tgcccttagg tttccttcta ccttatgacc tgtgagaaat aagctaattg ctataatcaa
     2281 taatacaaga ccattgacag gatttgcatt ttggcctata acataacttg ctatcatgga
     2341 tattccaaca atatacaacg gtaatccaat acaatgcagc attctattga ctggatgcct
     2401 atgagtattc ctaatggcct ttagaaggtt aaatgccaat ccaatctttg tgggggatta
     2461 agagatttga atcttatcag taagcaggtt gattgttttc taaatttcat tcataacata
     2521 atataagatg aatagaaaaa gatctcgact ttcagctgat tgagaatcaa gattcttttt
     2581 tcttttctgt ttctaaatag agtatactct aaatcttgta tgtttgtatt gatactatct
     2641 atcttagcag cgagttctga tgttactctg atataaactc acagtttaag gaataagctt
     2701 ctataataat aggcttgacc ttttagctta ttcatagcaa cgattgaacg cattaaattt
     2761 cttgatgatg atatattaca ttatctatga agcagtcaac tctaagacaa ctcttactct
     2821 aggtaatcac tttgtgactt tgatatctcg gaag
//
LOCUS       DATAAS010000434         2426 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4796749, whole genome shotgun sequence.
ACCESSION   DATAAS010000434 DATAAS010000000
VERSION     DATAAS010000434.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2426)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2426)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2426
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4796749"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..848
                     /locus_tag="VHF08_06935"
     CDS             <1..848
                     /locus_tag="VHF08_06935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068422.1"
                     /translation="EMPITIRINPTFTDLLQKNLKSRYEDRRRLDTIVHVSDIIPTTC
                     IRKQYYSRKFPELDPLSNESVHHFVRGESSEFVITELASLGVSQANIEMDGIVAHPDI
                     MNEVEDVIVELKDTVNGKRLDITDGAFRAYLRQLLYYLVMTGIEKGIISIRYNIKELR
                     WIKSDSAGNDYFFRPFNAKDVGIESWEVHLPAADIAREILKNEMVRRKNLFLKALEEN
                     DVSILPRLPELARNKKCPWCPFYDKCMNKDNETDKAKEMANEVDLLDISGVVDFKPVV
                     ENSDK"
     gene            1062..2090
                     /gene="fen"
                     /locus_tag="VHF08_06940"
     CDS             1062..2090
                     /gene="fen"
                     /locus_tag="VHF08_06940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flap endonuclease-1"
                     /protein_id="HEX2068423.1"
                     /translation="MGLDLKPLVAPTNITISELSNKVVAVDAYNAIYQFLATIRGPTG
                     ELLTDGKGDITSHLSGLFYRNVNLLAENIKLIYIFDGKPHPLKSKEIERRRQIKQEAS
                     KRYDEAISEGRFEDARKYSQATSILTSQMVEESKKILTLLGIPCIQAPSEGEATAAYL
                     TKLDIAFTSASQDYDSILFGAKKLTRNLTVSGRRKVPNRNLYIDIEPEIIDYQQILNK
                     TRLTHEQLVDVGILIGTDFNPAGFTGIGPKTALKLITEFGKLENIEKIKSSLSDVPYQ
                     EIRDIFLKPEVLDVDNIEFNEVNYKDIVDFLCIEKSFSTDRVSAALEKLKKSIANRSQ
                     SLEKWFGS"
BASE COUNT          910 a          370 c          443 g          703 t
ORIGIN      
        1 ttgaaatgcc aataactata cgaataaatc ccacgttcac agatttactt cagaaaaatc
       61 tcaaatctag gtatgaagat agaaggagac tcgacaccat tgtacatgtt tcagatatta
      121 tacccactac ctgcataagg aagcaatatt attccagaaa gtttcctgaa ttagatcctc
      181 tatcaaatga gtcggtacac cattttgtaa gaggtgaatc cagtgaattt gtgattactg
      241 agcttgcaag tttaggtgta tcccaagcca atatagaaat ggatggaata gttgctcatc
      301 cagatattat gaatgaagta gaagatgtta tagtagagtt aaaagataca gttaatggca
      361 aacgtcttga tataactgat ggtgcattca gagcatacct cagacagtta ttatattatc
      421 tggttatgac cgggatagaa aaaggaatta tttctataag gtataatatt aaagagttaa
      481 ggtggataaa aagtgattca gcaggtaatg attatttctt caggccattt aacgcgaaag
      541 atgttggtat agaaagttgg gaggtacatt tgccagctgc agatattgcc agggagatac
      601 taaagaatga aatggttcga aggaaaaatt tattcttaaa agcattggaa gaaaatgatg
      661 tttctatatt acctagatta cccgagttgg caagaaataa gaagtgtcca tggtgtccat
      721 tttatgataa atgcatgaac aaagataatg aaacagataa agctaaagaa atggcaaatg
      781 aggtagatct cttagatata agtggtgtgg ttgactttaa gcctgttgta gaaaatagtg
      841 acaaatagtc atatttatgg aaataacatc actataatat tattcgtaag tgacttgatc
      901 cattacttta cgttatgata ctagaagaag cgccagtata acgtattaat tataggaata
      961 agagagaatg attgcaaatt ctaatatcct catgaccatt ggaggagatt ctcaaaaaat
     1021 aatcagaaaa aaataaaatc atccaacgtc caattaaata aatgggatta gatctaaaac
     1081 cacttgttgc accgactaat atcactatat ctgaattatc caataaagtt gtggcagttg
     1141 atgcctacaa tgcaatatat caatttctcg caactattcg cgggccgaca ggtgaattac
     1201 ttacagatgg taaaggtgat ataacaagcc acttaagtgg cttgttttat cgaaatgtca
     1261 atctattagc ggaaaatata aaactcattt atattttcga cggcaagcca catcctctca
     1321 agtcaaagga gattgaacgg agacgtcaaa taaaacaaga agcatctaaa agatacgacg
     1381 aagcaatatc ggaaggaaga tttgaagatg cccgaaaata cagccaagcc acctctattt
     1441 tgacatccca aatggtagaa gaatccaaaa aaatcctaac tttgcttggg attccctgta
     1501 ttcaggctcc atctgaagga gaggccaccg ctgcctatct gacaaaactc gatatagctt
     1561 ttacctctgc aagccaagac tatgattcaa tattatttgg tgccaaaaaa ctgacgcgta
     1621 atcttactgt cagtggtagg agaaaagttc caaacaggaa tttatacatt gacattgagc
     1681 cggagattat tgattatcaa cagattctta ataaaactcg actgacacat gaacaattgg
     1741 tagacgttgg aattttgata ggtactgatt ttaatccagc aggattcaca ggcatcggcc
     1801 ccaaaactgc tttaaagtta attacagaat ttggaaaatt agaaaatatt gaaaaaatta
     1861 aaagttcttt atcggatgtc ccctatcaag aaattcgaga tattttttta aaaccagaag
     1921 tattagatgt tgacaatatt gagtttaatg aggtaaatta caaggatata gttgatttcc
     1981 tgtgtataga aaaaagtttt tctacagatc gtgtaagtgc agccttagaa aaactaaaaa
     2041 aatcaattgc aaatcgtagt cagtctctag aaaagtggtt tggtagttaa ctaattggag
     2101 caggattaaa gtaatcttat cgcataatta gaatcaccca aaaatgaaat tgaatatctc
     2161 aaaagctggg aacagctatc atcacagtac aagtcgatat tcgatgctta aaactcatta
     2221 taatactcca gaaatctaca tataagtagg cgttattcaa tttggttttg ttgaactgca
     2281 tttatatata caaaaacata tctaattatc atttatctaa cgataaataa atttgagatt
     2341 aactaactga caaacctcat gtataagaag tatatataga aaattcgtaa aacaggtaat
     2401 aaattacaaa aatatgagta aatatc
//
LOCUS       DATAAS010000435         1759 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3704760, whole genome shotgun sequence.
ACCESSION   DATAAS010000435 DATAAS010000000
VERSION     DATAAS010000435.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1759)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1759)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1759
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3704760"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(944..>1759)
                     /locus_tag="VHF08_06945"
     CDS             complement(944..>1759)
                     /locus_tag="VHF08_06945"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEX2068424.1"
                     /translation="NRNLIEREEIIRSQYDKLKESDKMKKEFINIAAHELRTPILPIL
                     AISQIIRPKVDDKQREYIDVIIRNAKRLEQLAENILDVTKIESQSLKLNKERFNLNDV
                     ITNTIDDMILNRVFKNKKNNDDDDGDNIKLEYRPKNIFVEADRVRMTQVISNLLHNAI
                     KFTKEGGGGSISINIEKEDSHILVSVKDTGTGIDPEIFPQLFSKFVTKSFQGTGLGLF
                     ISKGIIEAHGGKIWAENNNKNNNNIVDGKKGSTFYFTLPSINQRLNVNVVNHQ"
BASE COUNT          521 a          308 c          261 g          669 t
ORIGIN      
        1 gtcagaaata gatataagaa tatcataagc cagctcgata gtatctagat tttgtaataa
       61 ataactactg attgtcatgg tttgaaaccc aaatcctcct cctccttctc attcttatca
      121 actatgcaat aacatagata agttaaatcc tatgtatcaa aaaacaaaat gacagaaagg
      181 taagtcgtgc aatacagtat ttttatacta tagaagatgt ctgattgctg ttaataatac
      241 ttgcttacta taacccagac tctaaattat gtatcctatt tattatattt gaatgatcag
      301 cttctggttc tgtggttaca tacagaagaa ggtcatgtcc aaatggcata gtgatgcgtt
      361 taatcttttc atattcagcg agcacatatt ttccttttcc aatctttgat gcaagtttgc
      421 tgcgtgtctt ccatgaatta acagccagtt caagtgattc tttgctttcc tctggactac
      481 aaattcttta cacccttacg gtgatcagag aacattactt tgccattgtt atcacatatg
      541 gtaactaacc taatctttga gtcaatattc agaatatctg tatacagttt ttgataattc
      601 attaatcatt aatttgatag ggatgtaata aagtttaaac ccagacagat tctctctctg
      661 agttgtgtcg ttcagtctat gtgaatggat acatgactat aaagaggagg aagaggaaga
      721 gaaaagatct tcttctttct atcggagtag tagcgactct gaattatgaa ttatatatat
      781 gcatagacat cctacgccct ttacgaaaca acgaattcta gttgtagatg atgaacttga
      841 tgttaatttg gccataaagc ttgcactttc ttctaaaaca ctatctttag cataaaaata
      901 acgtcaggtt catcgtctac caccaggatt ctcttattta ttattattga tgattgacca
      961 catttacatt tagtcgttga ttaatggatg gcagagtaaa gtaaaatgtt gatccttttt
     1021 ttccatcaac aatattatta ttatttttat tattattttc agcccatatc tttcctccat
     1081 gggcttctat gataccttta gagataaaca agcccaagcc agtaccttga aaagattttg
     1141 taacaaattt tgagaatagt tggggaaata tttcagggtc tataccagta cctgtatctt
     1201 taacactaac tagaatgtga ctgtcttcct tttctatatt gatagagata gatcctcctc
     1261 ctccttcttt tgtaaatttt atagcgttgt gtagtagatt ggaaataacc tgtgtcatcc
     1321 tgactctgtc tgcttctaca aaaatatttt tgggcctata ttctaatttt atattatcac
     1381 catcatcatc atcattattc tttttattct taaatactct gtttagtatc atatcatcta
     1441 tagtgttagt tattacatca tttagattga acctttcctt atttagtttt aatgactggc
     1501 tttctatttt cgtaacatct agtatgtttt ctgcaagttg ctccaatctt tttgcatttc
     1561 ttataataac atcaatgtat tcacgttgtt tatcatccac cttaggacgt ataatctgag
     1621 atatagcaag tattggtagt ataggtgttc gcagttcatg tgctgctata ttgataaact
     1681 cttttttcat cttatctgat tcctttaact tgtcatactg ggaacgaatt atttcttctc
     1741 tttctattaa gttcctatt
//
LOCUS       DATAAS010000436         2638 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4807571, whole genome shotgun sequence.
ACCESSION   DATAAS010000436 DATAAS010000000
VERSION     DATAAS010000436.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2638)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2638)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2638
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4807571"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            29..1819
                     /locus_tag="VHF08_06950"
     CDS             29..1819
                     /locus_tag="VHF08_06950"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: protein motif:HMM:NF006187.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase large subunit"
                     /protein_id="HEX2068425.1"
                     /translation="MKAIRTDKVNDYSQMENKAQPESNLSYQTDDNNISQVSMKASDL
                     FIRCLESEGVEYIFGLPGEETNDLMMSLLNSKIKFILVRHEQGAAFMADMYGRLTQKV
                     GVCLSTLGPGATNLTTGVANANMDRSPILAITAQTDSNLLHKESHQNMDVITMFKPIT
                     KWRWSIQNADSIPEIVRRAFKISVDEKAGAVHLELPQDIAKKKSRIKPIAKSQELLRS
                     MPYKDLIKYAAKMILNSKIPLLLVGNGCVRGNASLCLRDFVERTGIYSLNTFMAKGVI
                     SDKSERHLQTIGIKEADHALIAMKEADLVIAVGYDLVEFGPKNWNKSLNKKIIHIDFT
                     PAEVDTYYPPTIEIAADIGFTIGAILDELEKEEKNRNMNIKEVLYDKKILDLFKSIKK
                     EVVRRIESFKDDDFSYPIMPEKLVNYVRSALDESDIVISDVGAHKLWIAKIYNTYAPN
                     TCIIPNGFCSMGFALPAAIAAQLARPNQKIVCMCGDGGFLMNIQELETAVRLQLPIIV
                     IVWCDLDFGMISLKQISEFGRSAFTKFNNPDFAKLAQSFGAIGYNVKSTLEFPKILEK
                     AKESTSIPVIISIDVDYSRNRILLTDDFTG"
     gene            2119..2328
                     /locus_tag="VHF08_06955"
     CDS             2119..2328
                     /locus_tag="VHF08_06955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068426.1"
                     /translation="MAHRDEHTIRCSECGRGLIVKDTVNNGVAFLSHLKLDHGITYIV
                     QQMTEAKTMSKSIEKQIHKSYLEDR"
BASE COUNT          967 a          374 c          489 g          808 t
ORIGIN      
        1 tatatcatta gattgagata tttttaatat gaaagccata aggactgata aagtaaatga
       61 ttattcacag atggaaaaca aagcacaacc tgaaagcaat ttgtcatacc aaacagacga
      121 taataacatc agtcaagtct ctatgaaggc atccgatctt ttcataaggt gtttagaatc
      181 tgaaggtgtt gaatatattt ttggcttgcc cggagaagag actaatgatt taatgatgtc
      241 attattgaat tcaaagatca aatttatctt agttagacat gaacaaggag ctgcttttat
      301 ggcggatatg tatggcagat taacacaaaa agttggagtg tgtctttcta ctttaggacc
      361 gggtgcaaca aatctaacaa caggtgttgc aaatgcgaac atggacagat ctccaatatt
      421 ggccattaca gcgcaaacag attcaaatct attgcataaa gagtctcatc aaaatatgga
      481 tgttataacc atgtttaaac ctataaccaa gtggaggtgg tcaatacaaa atgctgatag
      541 cataccagaa attgttagaa gagcattcaa gatatcagta gatgaaaaag ctggagcagt
      601 acatcttgaa ttaccacaag atatagccaa aaagaaatct agaatcaaac ctatagcaaa
      661 atcacaggaa ttgctaagat ccatgccata taaagatttg ataaaatatg cagctaaaat
      721 gattttgaat tcaaaaatac ctttactatt agttggaaac ggttgtgtaa gaggaaatgc
      781 tagcttgtgt ctgagagact ttgtagaaag aacagggata tattcattaa atacatttat
      841 ggcaaaagga gtaatatcag ataaatcaga aaggcatttg caaacaattg gaatcaaaga
      901 agcagatcat gctttgattg caatgaaaga agccgatttg gtgattgcag taggatatga
      961 tcttgttgaa ttcggaccaa aaaactggaa taagagttta aataaaaaaa ttattcatat
     1021 tgattttacg cctgctgaag ttgatacata ctatcctccg accatcgaaa ttgctgccga
     1081 tattggattt acgataggtg ctattttaga cgaactagaa aaagaggaaa aaaacaggaa
     1141 tatgaatatt aaagaagttt tatatgataa aaaaatttta gatttattta aaagtatcaa
     1201 aaaagaagta gttcgaagaa ttgaatcttt caaagatgat gatttctcct atccaataat
     1261 gcctgagaaa ttggtaaact atgtaaggag tgctcttgat gaaagcgata ttgttatatc
     1321 agatgttgga gctcataaac tgtggatagc aaagatatac aatacttatg ctccaaacac
     1381 ctgtataatt cctaatggtt tttgctcaat gggatttgct cttccagcag ccatagcagc
     1441 ccagctggca agacctaatc aaaaaattgt ttgcatgtgt ggagatggtg ggtttttgat
     1501 gaatattcag gaattggaaa ctgctgtccg tttacaatta cctataatcg tcattgtatg
     1561 gtgtgatctt gatttcggta tgatatcttt aaagcaaatt agtgaatttg gaagaagcgc
     1621 atttactaaa ttcaacaatc ctgattttgc aaaacttgct caaagtttcg gagcaatagg
     1681 atataatgtt aaatctactt tagaatttcc taaaatcttg gaaaaagcaa aagaatcaac
     1741 ctctattcca gttataatat caattgatgt agattattct agaaatcgca ttttgctaac
     1801 tgatgacttt acaggctaat tggatttttt agattcaagt atattggtcc aacataaatg
     1861 acaaagattg tcatctgtct tagcttttat aaacaagata tttatggtca ctgaaaagtg
     1921 aaaaaatcga attctgttaa atatagactc aatttgctgt tatctggtac tgctctgcat
     1981 tatattgctc ttgttaactt caaagttact attcacaaat atctttctct tacaatgcca
     2041 taaattatat ataaacataa agtattagca gtctttaaag tttattattt atattgatag
     2101 agatattata tctattatat ggcacataga gatgagcata caatcaggtg tagtgaatgt
     2161 ggacgaggat tgatagttaa ggataccgtc aataatggag tggcttttct gagccatttg
     2221 aaattagacc atggtattac atatatcgtt caacaaatga ctgaagcaaa gaccatgagt
     2281 aaaagtatag aaaagcagat acacaagtca taccttgaag atagataaaa gtgtgctcat
     2341 taagttttat acttgggaag tttgatagaa catggcaaag aggatattga tgataactaa
     2401 tgcttgaaat cttaattgaa tctgatctaa agataaggtt taacataaaa acatggaata
     2461 tagaccgttg gcataaccct ctttttgaac tggtacaaaa tactgcgaac ttttactcgg
     2521 aaggtattgc tcagtgtata aagtgtccat attagtactt ggggaaccag aaaaatggct
     2581 cattcccagg acaaacaaag aaagtatata atgtgcttac ttgttcaaaa aagaattc
//
LOCUS       DATAAS010000437         2687 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1034783, whole genome shotgun sequence.
ACCESSION   DATAAS010000437 DATAAS010000000
VERSION     DATAAS010000437.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2687
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1034783"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..410
                     /locus_tag="VHF08_06960"
     CDS             <1..410
                     /locus_tag="VHF08_06960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HEX2068427.1"
                     /translation="KIREWSGTLSGREQLAAEKFADAIESIPLVLAENAGMDIIDTQV
                     QLRAKSSSGGKVRYGVDVLNGKVADLASKNIYEPLLVKEQIIKSATEAASMILRIDDV
                     ISASKSKGAGPPPQPGAGGYGGAGGYGDGYEDM"
     gene            677..1507
                     /gene="pcn"
                     /locus_tag="VHF08_06965"
     CDS             677..1507
                     /gene="pcn"
                     /locus_tag="VHF08_06965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030337 - DNA polymerase processivity
                     factor activity [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proliferating cell nuclear antigen (pcna)"
                     /protein_id="HEX2068428.1"
                     /translation="MSSSKSISELHFFTITKTSEIWKSISSAIMTIIDEALFDAGPHG
                     ITFRSMDPSHIALIDINWPSSAFEKYHCDSTIKFGVRIDEFAKIIKRANANDSIEIGV
                     VLDNSSLNIKTQSDGGYLRNYKMRLIESTGNTSPLPQMTFDSKIVIGIATLDKILNDI
                     GAISEKIIIDTGSGGISTNKKTVIFSGDSDRGEARVTMDANDANKNKAEFLEEITVKE
                     TSKSTYNIDFISKIIRAIDHQSSNLVTIEYSSNKPLRLEFLLSGIVKLQFYLAPRVQD
                     "
     gene            1600..2052
                     /locus_tag="VHF08_06970"
     CDS             1600..2052
                     /locus_tag="VHF08_06970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068429.1"
                     /translation="MTNHNDWLEITIKFRGKCCECGKEITSGQALWSKSTKAVKHLNC
                     PSRNVDNNAIASTSLEETATHDPRKKEFATTKHRKSLQQTIELKCFICGNKTKSINNE
                     NDDSVDYIDYYKDKSHNHAYICQSCLKREDVYEAYQQAFLQTINKYLK"
BASE COUNT         1000 a          419 c          456 g          812 t
ORIGIN      
        1 agaaaataag ggaatggtct ggtactctgt caggtcgtga acagttagct gcagagaaat
       61 ttgcagatgc aattgaatca atcccattag tattggcaga aaatgcaggt atggatataa
      121 tagatacaca agtacagcta cgagccaaaa gctcatctgg tggaaaagta agatatggtg
      181 ttgatgtact caatggtaaa gttgctgatt tagcttctaa aaacatctat gaaccattac
      241 tagtaaaaga gcagatcatc aagtcagcta ctgaggcagc atctatgata ttgcgtattg
      301 acgatgtgat atccgcttct aaatccaagg gtgctggacc accaccacag ccaggagctg
      361 gtggatacgg aggagcagga ggttatggcg acggctacga agacatgtag cacaatcact
      421 tatccaaaaa caaccaatat ttttttattc gtgtcagata tacctaaata aaaaaaggta
      481 ataattatga gcttctggaa taccgatcta gatgatcgga taataacata ataataatat
      541 caagttatca tgacattaca gatataagga agagagaccg cgataatacc aacaaaaatt
      601 ttttactcaa aagtcgaatt aattgaaatg accgattaaa aaagtgatca tcagaataaa
      661 taaagaaatt atataaatgt catcatcaaa atcaatctca gaattacatt tttttactat
      721 cactaaaact tctgaaatct ggaagtcaat atcgtctgca ataatgacaa taatagacga
      781 agcactattt gatgccggtc ctcatggcat aacatttaga tcaatggatc catcccatat
      841 tgcattaata gatattaatt ggccaagttc tgcatttgag aaatatcatt gtgattcaac
      901 aataaaattt ggagtcagaa tagatgagtt tgcaaagata atcaaaagag caaatgctaa
      961 tgactctata gaaatcggtg ttgttctaga taatagttct cttaatatca agactcaaag
     1021 tgacggtggc tatctacgca attataaaat gagattaatc gagagcacag gtaatacatc
     1081 tcctttacca cagatgacat ttgatagcaa aattgtcata ggaatagcaa cactagataa
     1141 aatactaaac gatattggag caatatctga aaaaataatc atagatactg gtagtggtgg
     1201 tatttccact aataaaaaaa ctgtaatttt tagtggtgat agtgacagag gggaggcaag
     1261 agtaacaatg gatgcgaatg atgctaataa aaacaaagct gaattcttag aggagataac
     1321 agtaaaggaa actagtaaat ctacatataa catcgatttt atttctaaaa taataagagc
     1381 tattgatcat caatcatcta atctagtcac aatagaatat tcttcaaata aacctctcag
     1441 attagaattt cttttatctg gtatagtaaa actacaattc tacctagcac cgagagtaca
     1501 agattaattt attatactct aataataaca ataaagtatc tggatgtcat atgtagttta
     1561 tattatatat atttttaaag gaaaattgag ctgagtaaat tgactaatca taacgattgg
     1621 cttgaaataa ccataaagtt cagagggaaa tgctgcgaat gtggtaaaga gataacatca
     1681 ggacaagcac tttggtctaa atctacaaaa gctgttaaac atctgaattg tccttctaga
     1741 aatgtcgaca acaatgcaat tgctagtacg agtctagagg aaactgcaac tcatgatcca
     1801 agaaaaaaag aatttgctac tactaagcat agaaaatctc tgcagcagac tatagaatta
     1861 aaatgtttta tttgtggaaa taaaacaaaa agcatcaata atgagaatga tgattcagta
     1921 gactatattg actattataa agataaatct cataatcacg cctacatttg tcaatcatgt
     1981 ctaaaaagag aggatgtcta tgaagcttac cagcaagctt ttctccaaac gatcaataag
     2041 tatttgaaat gaagtaagac aagaatacgg gtactcatta gcaggcaaga actatataat
     2101 ttagatagaa cttgcttaac atggaagtaa gtatgattgt cttaaactat tgactaatct
     2161 aacgaattta agaatatact tatcaatatc taatctaggc ttttagccct gcttttagat
     2221 ttgaatatct tttacttcag cactagttat cttttcgtcc tttacatcaa catatcaaag
     2281 ttattcacta aagatatact accaaatatt tatgttatag tccatatccc aaaaaaatta
     2341 tagtgcatgg atgaagtagc aaaatgattc ttcatcacga ttttatcttt ttcacttgct
     2401 tcgttagcca aggcatctaa tattattttt attccttaac ttgttttata tcattcctca
     2461 gaagaataga atatatctat tttttataaa tagctctttg aatgtgatta tttgacattt
     2521 ttcctgctgt ttcaaaggac gcacaagggc agggttccat ggctgacacg atttactgag
     2581 ataatctatt gacgccacct gtcttagaca tataattcat gatagttgtt gtacttggaa
     2641 ctacagcctt aagagatgtt ccttacgaga cttctattat attaagt
//
LOCUS       DATAAS010000438         2041 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1040075, whole genome shotgun sequence.
ACCESSION   DATAAS010000438 DATAAS010000000
VERSION     DATAAS010000438.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2041)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2041)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2041
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1040075"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            391..>2041
                     /locus_tag="VHF08_06975"
     CDS             391..>2041
                     /locus_tag="VHF08_06975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX2068430.1"
                     /translation="MSHFRCPNCGSLKSIQMDKIFDGRFFFRCSKCNICSILPLNNNL
                     EETYLDFLDLYDRRCVTTTENLRSLMEEEKIIRSEPEVRSLITKNNANNNDLIKKILY
                     SDKDYVVDFKILEQADIELGSKVSELPIDESLIAALSENNIEKVYRFQEEAIRKILLG
                     KDIIIIAPTASGKTEAFSIPVLQKISEDISHFGSLRPSLKKNKISAIFVYPTKSLSRD
                     QLPKIKRLAESVGLHVDLLDGDTTKNERESILSSPPDVIITNFDVIHYHLMHRTRFSR
                     LIRNAKYLIVDEAHVYTGVFGANVHFIIRRLERLSPNKKIQMIAASATLPNAASFCQV
                     LFDRKMEIVEGKGRKGKINFIILFPSLRSHRSLTIDLLKYTTRLNHKTIAFNNSHLGS
                     ELLAFYASKQGVRIMVHRAGILPTIRKFVENSFKRGELHAISATPTLELGIDIGDVDA
                     IISNIVPINRLTQRLGRAARRGQQGYAFLALGNDPISQYYKFHPADYFADEEHAYTDP
                     SNPIVEEYQVLAMICDRPLSMVESHDEWNTIQRLISKNLVKV"
BASE COUNT          719 a          359 c          344 g          619 t
ORIGIN      
        1 ccttaacacc agggatgcct ttcatatctg cagctaaagt tgattcataa ccaagatcag
       61 cgttcaacaa tacaaatgct ctcggcatat tgttctacac atcatttagc agggattata
      121 ctttaagtta actattattt aattcacaaa tatcaaccgg tgtcctcttc tatatataat
      181 gagtttcaaa caagctgtaa caagaaattg atggcaattt ttcatcttag aaagtagatg
      241 gatatatatt aataatgaac gtttccagta atctttcaac cattgtagta aaagcgtttg
      301 caaaggcagc attataaaat tcttaaaatt ctcaggaatg gtttgaccaa atatcccaaa
      361 cattttattt tacatgatat caaaaagtgt atgtcccatt ttcgctgtcc caattgcgga
      421 tcactcaagt ctatccagat ggacaaaata tttgatggta ggtttttttt cagatgctca
      481 aaatgcaata tatgcagcat acttccgtta aataataatc tagaggaaac atacctggac
      541 tttttagatt tgtatgatag aagatgcgta acgactacag agaatttaag atcactcatg
      601 gaggaagaaa aaatcatcag atctgaaccg gaagtaagat ccttgattac aaagaataat
      661 gctaataata atgatcttat taaaaaaata ctatattctg ataaagacta cgttgtagat
      721 tttaaaatcc ttgaacaggc agatatagaa cttggaagta aagtttcaga acttccaatt
      781 gacgagtctc taatagccgc tttgtctgag aataatatcg aaaaagtata cagattccaa
      841 gaagaagcca ttagaaaaat cttgcttgga aaagatataa ttattatcgc cccaacggca
      901 tctggtaaga ccgaggcttt ctctataccg gtattacaga aaatttctga agatatttct
      961 catttcggat ccctgcggcc gagtttaaaa aaaaataaga tctctgcaat atttgtatat
     1021 cctacaaaat ccctttcaag agatcaatta ccaaaaataa aacgccttgc agagtcagtt
     1081 ggactacatg ttgatcttct tgatggcgat acgacgaaaa atgaaagaga atccatattg
     1141 tcatctcctc cagatgtcat cattacaaat tttgacgtta ttcattatca tttaatgcat
     1201 agaactagat tttcgcgctt aatacgtaat gcaaaatatc tgattgttga cgaagctcat
     1261 gtttatacag gtgtttttgg tgcaaatgtt cactttataa ttagaagatt agaaagactc
     1321 tcacctaata aaaaaataca aatgatcgct gcttcagcca cgcttccaaa tgcagccagt
     1381 ttctgtcaag tattatttga tagaaaaatg gagatcgtgg agggaaaggg cagaaaggga
     1441 aaaataaatt ttataatctt atttccatcc ttacgatctc atagatctct aacaatagac
     1501 ttattgaagt atacaaccag actaaatcat aaaactattg cttttaacaa ttctcatcta
     1561 ggctctgagc tattggcatt ttatgcatcc aaacagggag taagaataat ggtccatcga
     1621 gctggaatct tgcccacaat tagaaaattt gttgagaatt catttaaacg aggagaatta
     1681 catgctattt ctgcaactcc aacgttagaa cttggcatag acattggtga cgtagatgcg
     1741 atcatatcaa atatcgttcc cattaataga cttacacaaa gacttggtag agcagcgaga
     1801 agaggacaac aaggatatgc cttcctagcg cttggcaatg accctataag tcaatattat
     1861 aaatttcatc cagccgatta ttttgctgac gaagaacatg catatactga tccttcaaac
     1921 cctattgtag aagaatacca ggtccttgcg atgatttgtg ataggcctct atccatggtt
     1981 gaatcacatg atgaatggaa tacaattcaa agactaattt caaaaaatct ggttaaagta
     2041 g
//
LOCUS       DATAAS010000439         1819 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2651442, whole genome shotgun sequence.
ACCESSION   DATAAS010000439 DATAAS010000000
VERSION     DATAAS010000439.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1819
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2651442"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            513..731
                     /locus_tag="VHF08_06980"
     CDS             513..731
                     /locus_tag="VHF08_06980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068431.1"
                     /translation="MNKISDLINTWIPLVIISAGIPLTVGSLLSMPQDKIIITSILAA
                     VVAIIAFRLRPYFESEKEQKPQNSRIPK"
     gene            complement(932..1618)
                     /locus_tag="VHF08_06985"
     CDS             complement(932..1618)
                     /locus_tag="VHF08_06985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068432.1"
                     /translation="MTASVPHAIREVLSSNTLYLQALKSGIANYTALAQRIKPDVETI
                     VGSQVNVGTIVVAIKRFADILEKEKQDEEKKPSNTHPMNGARMSLTGSIIDIDFDREL
                     DELSNILDEVFEKESGYNLFQTNKQLRLFTEDIDEIRNIVSTASKKFDFKLKEGLSKI
                     TINFPSSTSYNNEQTPYNDVLSLVSDVLYNNQIPLYNAFFAPNETVLILKNKDAARAY
                     ELLRAKITKQ"
BASE COUNT          617 a          275 c          281 g          646 t
ORIGIN      
        1 aacaatcaga gaaatcaaat atacaattag aagaatagta aagatataca aaattaatga
       61 tatatcatgt tggattagtt gttgcccatt ctttccaata ttaagaaaag ttaaggtctt
      121 ctcataatta tttacaattt gttattagat atggtatcct tttcatatct gtgaaaatct
      181 atcactttcc taaatgccat tcttgaaaca aattctatct tctcctattg ggacgatcac
      241 atgcaatttg gataccaagg gtgatatgtt tcttatttat agtgagtgag caaaataagg
      301 ttatgaaaaa taatattata tatttaaaag aagagtgagc taaaagattc taaggccaga
      361 atgctattat tctatatata caataggact ttatgaagcg cgttagaata tttgacaatt
      421 cttgtttaca gtagttataa gataagcaga catagaaaac attatacaaa agtttgaata
      481 acaacaattt aataaagaga cgctaattga atatgaacaa gatctcggat ttaatcaata
      541 cttggatacc tctagttata atatctgcgg gtattccact gactgttggt tcattgttgt
      601 ctatgccaca agacaaaatt attattacat ctatacttgc agcagttgta gccattattg
      661 cattccgtct gagaccttac ttcgaatcag aaaaagagca aaaacctcaa aacagtcgga
      721 taccaaagtg aataatatca ttatattttt tataatagct cgctacagca tttctctata
      781 taacagtcaa atatctttct accgtttctt cattgatgat gacatagact ttaaacggaa
      841 tcatatcctt tataggtaac gataccaaga cacctttaaa atttaataat ctgataaaaa
      901 ggttcaattc attatcagtt tatttacatt attactgttt tgttattttt gctctcaata
      961 attcataagc tctagcagcg tctttatttt ttaatataag cactgtttca ttaggtgcaa
     1021 aaaacgcatt atagagcgga atctgattat tatatagaac atctgatact aatgatagca
     1081 catcattata tggggtctgt tcattattat aagaggtaga ggaaggaaag ttaatagtaa
     1141 tctttgatag tccttccttc aatttaaaat caaatttttt tgaagcagta gagacaatat
     1201 ttctgatttc gtcaatatct tctgtaaata atctaagttg cttatttgtc tgaaaaagat
     1261 tataaccact ttctttctca aatacttcat ctagtatatt tgaaagttca tcaagctctc
     1321 ggtcaaaatc gatgtcaata atactgcctg tcagagacat tctagctcca ttcataggat
     1381 gtgtattgct aggtttcttt tcttcatctt gtttctcctt ttctaatata tctgcaaatc
     1441 ttttgattgc tacgactatt gtacctacat taacttggga gcctactatt gtctctacat
     1501 caggtttaat tctttgtgct aatgcagtat aattagcaat tcccgatttc agggcttgca
     1561 gatagagagt attagaagat aatacttctc ttatggcgtg gggtactgat gctgtcatcc
     1621 tatacatatt gttatattta tcttatttgg taataaatat tactctttgc cgtaaaatat
     1681 atatattgta atacgtatta cataacgtaa ggtgaaatca aatatgtgga gtgacccatg
     1741 gaaatttagt agaggaattt tagaagatat cgacaaggaa tttgcagagg cagaaaatat
     1801 gctgaacaga atgttcagg
//
LOCUS       DATAAS010000440         3396 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5347359, whole genome shotgun sequence.
ACCESSION   DATAAS010000440 DATAAS010000000
VERSION     DATAAS010000440.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3396)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3396)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3396
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5347359"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..809
                     /locus_tag="VHF08_06990"
     CDS             <1..809
                     /locus_tag="VHF08_06990"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEX2068433.1"
                     /translation="QYTEAKPILDKYGFKASFFVVCNWISDSNEDKDEDNSHMTWQDI
                     ETLYNEGHNIGAKSLNHKDLTTLSASKLDFEVGESKKCLADQNIDARVFGTPYGKGRD
                     NSTVIDTIAKYYDFAITGFSKLMYLNCDGWNEQQEEGEGEEKDGVKSNTQTDCRTYSD
                     DGTLTYANRYSIREWSHDSANEDYDNDNEMYQEFVNVVNSQDEFNGDGTIRAIPIIAY
                     HDLDYGYRTPDSTSVNLFDAEMKYLYDNGFTVLTMADLEYDENTNQLYIK"
     gene            complement(1046..2305)
                     /locus_tag="VHF08_06995"
     CDS             complement(1046..2305)
                     /locus_tag="VHF08_06995"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2068434.1"
                     /translation="MDLLFNWLSRDGKLLLAAKIVRTFAYGFLSVILAIYLKLIGFDD
                     LLIGLILTVTLVNSVIFTLIASFYADRIGRRRTLAIYAALMSISGAIFVITENHVMLI
                     VAAFIGTINVTGSETGAFLTIEQSILPQTVKNIKKRNIIFAIYNMVGTFAMSAGVLLS
                     GLPTIIQQQFGETLNQIDSIKPLFILYSLLGIVVIGIYLLLSNRIEVEGKIARPLTQT
                     LSPMSKNIVGKLSGLFAIDSFAGGFVIQSIVSFWFFTKFGADLTTLSYIFSVAGILTA
                     FSFIASAKIADKVGLINTMVFTHIPSNILIILVAVAPSLPLAIAFYLIRMALSQMDVP
                     TRQSYIVAVVNEEERTAAAGITNISRNISQAISPSLTGIIINTFTLSSPFIIGGLLKI
                     AYDIALYVNFRKIKPPEEGELKEEDKE"
     gene            complement(2566..2697)
                     /locus_tag="VHF08_07000"
     CDS             complement(2566..2697)
                     /locus_tag="VHF08_07000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068435.1"
                     /translation="MSNIEATEDNIESPSTYGNEAYKGYRKDKKKKQKEDSKLGETK"
     gene            3013..3162
                     /locus_tag="VHF08_07005"
     CDS             3013..3162
                     /locus_tag="VHF08_07005"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068436.1"
                     /translation="MVGKSKGNKQVNKNAAKEKSKDSNKNKKMAKIRNDLGGGQSRGK
                     SKKQK"
BASE COUNT         1208 a          520 c          555 g         1113 t
ORIGIN      
        1 gccaatatac cgaagccaaa ccaattttag acaaatatgg attcaaggcc agtttctttg
       61 tggtatgcaa ctggatttca gattcaaatg aagataaaga tgaagataac tcacatatga
      121 catggcaaga tatagagaca ttatataatg aaggacataa cataggagca aagtctttga
      181 accataaaga ccttactaca ctctctgcta gtaaattgga ctttgaagta ggagagtcaa
      241 aaaaatgctt agctgatcaa aatatcgatg ccagagtttt tggtacgccc tacggcaaag
      301 gacgggataa ctcaactgtg attgatacta ttgcaaaata ttatgatttt gctattactg
      361 gtttttctaa actgatgtac ttgaattgcg atggatggaa tgagcagcag gaggaagggg
      421 aaggagagga aaaagatgga gtcaaatcaa atacacagac tgattgtaga acatattccg
      481 atgatggtac attgacctat gctaataggt actctattag agaatggagt cacgattctg
      541 caaatgaaga ttatgataat gataacgaaa tgtatcaaga gtttgttaat gtggtcaata
      601 gccaagacga attcaatgga gatggaacta taagggctat tcctataata gcgtatcacg
      661 atctagatta tggttataga acacctgata gtactagtgt gaatttattt gatgcagaaa
      721 tgaaatattt gtatgataat ggttttacag tacttactat ggcagacttg gaatacgatg
      781 aaaacacaaa tcaattatat atcaagtagc ttgaccaaca aaatagtaat agtacgagat
      841 gaatatggag atagtggaga gaacacgata ataatagtca tatgatatcg actcagagat
      901 aaatgcaata ctaaaagatc taggattgca tagttcttta tcaaaatagc aataactgtc
      961 atcaacaaag tttggtaatt atataattat gatatgactc tcttatagtg gaaatcttaa
     1021 agcattatct attgcgctct ttatcttatt ctttatcttc ttcttttaat tctccttctt
     1081 caggaggctt tatctttcta aagtttacat ataatgctat atcataagct attttgagca
     1141 atcctccgat aataaaagga ctagataatg taaatgtgtt aatgataata cctgttaatg
     1201 atggactaat agcttgtgat atatttcttg atatattagt aataccagca gctgcagttc
     1261 tttcctcttc attaactaca gctacaatgt atgactgtct ggtaggtaca tccatttgag
     1321 ataaagccat tctaatcaga taaaatgcaa tggctagtgg aagagaagga gcgactgcaa
     1381 caagtataat aaggatatta gaaggtatat gagtaaaaac catagtatta attaacccaa
     1441 ctttatctgc aatctttgct gatgctataa atgaaaaagc agtaagaatt ccagctactg
     1501 agaaaatgta agataatgta gtcaaatctg ctccaaattt agtaaaaaac caaaatgaca
     1561 caatgctttg aataacaaaa ccacctgcaa atgaatcaat agcaaaaagg ccagataact
     1621 taccaacaat attcttagac attggggata acgtttgtgt taatggcctt gctatctttc
     1681 cttctacttc tattctattt gataatagaa gatagattcc tattacaaca atacctaata
     1741 aactgtacaa aataaagagg ggtttaatgg aatcaatttg atttaatgtc tcgccaaatt
     1801 gttgttgaat aatggttggc aaaccagaaa gcagaactcc tgcagacatt gcaaaagttc
     1861 ctaccatatt gtaaattgca aaaataatat ttctcttctt gatattttta actgtctgtg
     1921 gcaatatgga ttgttcgata gtaagaaagg cgcctgtctc tgagccggtt acattaatag
     1981 taccaataaa agcagctacg ataagcataa catgattttc tgttatgaca aagattgcac
     2041 cagatataga cattaatgct gcataaattg ctaatgttct tcgtcttcct attctatctg
     2101 catagaagct tgctattaga gtaaagatta cactatttac tagagtaact gtaagtatta
     2161 aacctattaa aagatcatca aatccaatta actttaagta tatagcaaga ataacgctta
     2221 gaaatccgta tgcaaatgtc cttactattt tagctgctaa aagtagctta ccatctcttg
     2281 agagccagtt aaataataaa tccatagtaa gtatttattc ttaatagtga ttcttgatct
     2341 cgttaatctt cttatttgaa ttcttatgtg gagatgtttt gaggttgcat aattgagtca
     2401 aatttgtctt atattcgtag aatgcttctc ttattatttc atttgcgaat atattaatca
     2461 tattgatttc acattaaata gtcttctgaa tgacataaaa gtaaaaacat caatgaaaaa
     2521 tgaagcacaa tattttgact tgaatttaca ctatcatatt gtcgattatt tggtttcacc
     2581 taactttgaa tcctccttct gctttttctt tttatccttt ctgtatccct tgtaagcttc
     2641 atttccatat gtagaaggtg attctatatt atcttcagtt gcttcaatat tgctcataga
     2701 atgtttaatt tctattctat attttaaagt attctatgct ctaggttatg cctaatcatt
     2761 tgattatggg ttgcaatttt gagtcaaatc tctcactcac tcacttcgcc ccaatcacag
     2821 ctgataactt taggattgaa tataaaatat tctacatatt atatctaaca aacaataatt
     2881 gaatctatct atctctctat atcatagtac atcatgttca gatccgtttt atctattgaa
     2941 actcttcttg tcatcttaat tcttatcaat tatattagtc tgctctaaat atgatttagt
     3001 gtagcatata ctatggtagg aaaatcaaaa ggcaacaaac aagtaaataa gaatgcagcc
     3061 aaagaaaaga gcaaagactc taataaaaac aagaaaatgg caaaaatcag aaatgattta
     3121 ggaggaggcc aatcaagagg taaaagtaaa aaacagaaat agaaacataa tgaattgtta
     3181 gaaaagatat gtgtgcgacc ctcaacttga tgataaattc gatataaaat agcagatacc
     3241 gtataaaaaa taaaaactat ctatcatcta ttttctttca tcgcagaatt gaattaatag
     3301 tcaagttttt cagacgcaca ttatcttatc atcttttaga tttttagcta tttcatttgt
     3361 gcgatttaat gaacgtcaag ttggtcatat actggt
//
LOCUS       DATAAS010000441         4289 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4819596, whole genome shotgun sequence.
ACCESSION   DATAAS010000441 DATAAS010000000
VERSION     DATAAS010000441.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4289)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4289)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4289
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4819596"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..343
                     /locus_tag="VHF08_07010"
     CDS             <1..343
                     /locus_tag="VHF08_07010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="4-hydroxyphenylacetate 3-hydroxylase C-terminal
                     domain-containing protein"
                     /protein_id="HEX2068437.1"
                     /translation="PSEQDFRSPEAGPLLEKYLKGRKGVSTENRVRILRLIENMTLGR
                     NAVGYLTESMHGAGSPQAQRIQIARQMQLEYKKKLAKNLARVEEGEANGLTNEQSDYF
                     DRIFGKIKKQE"
     gene            434..946
                     /locus_tag="VHF08_07015"
     CDS             434..946
                     /locus_tag="VHF08_07015"
                     /inference="COORDINATES: protein motif:HMM:NF016098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068438.1"
                     /translation="MYPKGKVREMIGHTTEDLTWKIFRIIVHNGKEGILQSSLWKELD
                     MTSRNGSRLAMKLEKQSLVKRERILEKGRWTYKLLPMEIPVDAESIDKAPCLTCPVEH
                     ICSVDSNYSPNNCNLIEDWLLSSIDTSSLLPYSAELHEKNIEAAKVSVSQPKSSAKRH
                     PERVIKNNKK"
     gene            943..1536
                     /locus_tag="VHF08_07020"
     CDS             943..1536
                     /locus_tag="VHF08_07020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RlmE family RNA methyltransferase"
                     /protein_id="HEX2068439.1"
                     /translation="MKLSQSRRDYYRKLAKNDGYRSRSAYKLKQLNNSYHIFKSRDKV
                     VDLGCAPGGWLQVLEEEIGNQGKIVGIDQKEVVPLRFATILQGSIEDPYIVEKTIKVL
                     NGRADVVLSDLAPNVCGIWDVDHARQISLTRSALTIVRKILRKNGSAIFKVFEGQMLK
                     QLKDDLAMHFENVHYSKPDASRRESSELYVICLNFRG"
     gene            complement(1552..2412)
                     /locus_tag="VHF08_07025"
     CDS             complement(1552..2412)
                     /locus_tag="VHF08_07025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068440.1"
                     /translation="MAETINLTTTDQNLSSRIENLGWDDLVNLKRRLSGRVKELSEKI
                     IDIERNRFRSINNNIHVEKNNLNNLLERTKQIRYEVQSKNSQLLSISEKISQSKDFLS
                     MMESRVSSDVEGNLFQSLDMLQKALDEKRYKSLREKNEILSSIKETQMKIEALKAVRV
                     IKDQMREYDKESENLRNSLKLLDEEHRLSQQKISEVNNIIGHLFNLKRQLPAEREIYL
                     KEYNEDLLQLEKINGRLDYMASMRKRQREEYGNALPKDTLFKLKEEAKKKMDSGSKLS
                     LEELKLLFGD"
     gene            complement(3021..4097)
                     /gene="trpD"
                     /locus_tag="VHF08_07030"
     CDS             complement(3021..4097)
                     /gene="trpD"
                     /locus_tag="VHF08_07030"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEX2068441.1"
                     /translation="MSTDNFDIRPILLKLVSRSALSEEEVHQTVNSILEGKLSEAAIA
                     SFLVAMSMKGETSEEIRAILQTIKRHAIKISPKITGPLVDTCGTGGDAIKSFNISTAA
                     AIVASSAGMRIAKHGNRSVSGFCGSADFLDFIGFDLQSPPEKVCSAIENIGISFLYAP
                     NFHPALRRVATARNIIGIRTVFNIAGPLSNPCTNITGQVIGVFASYLLEPIAHAIQNS
                     GINDAMIVHSHDGLDELSNTCENDIFWISDNQIKRIILHPTMLNMKVAKQSQIIINSK
                     EQSLRDTLQVIFGVASQEKEDIVVLNASAALVIGKVARDFQEGVDIARSLIKNGKPQQ
                     KLRELVRWCGREEILESAIKNFIP"
     gene            complement(4094..>4289)
                     /locus_tag="VHF08_07035"
     CDS             complement(4094..>4289)
                     /locus_tag="VHF08_07035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEX2068442.1"
                     /translation="HSLVVDSKTIPNCLEVTAWALDDGEIMGIRHRQYLVEGVQFHPE
                     SVLTKEGKKILFNFVSIVKR"
BASE COUNT         1338 a          763 c          782 g         1406 t
ORIGIN      
        1 gccctctgaa caggacttta gaagtcctga agcaggtcca cttctggaaa aatatttgaa
       61 aggaagaaag ggtgtctcaa ctgagaatag agtaagaata ttgcggctaa ttgagaatat
      121 gactctgggc agaaatgccg tgggttatct tacagagtcg atgcatggtg caggttcacc
      181 acaagcccaa agaatccaaa ttgcacgtca gatgcaatta gaatacaaaa agaaacttgc
      241 taagaacctt gctagagttg aagaaggcga agcaaacggt cttactaatg agcaatcaga
      301 ttattttgac agaatatttg gcaaaattaa aaaacaagag taaggactaa tacagtaaag
      361 atcttgcacc tcaaagttaa tatattttat tccgattcta aaggaagaat tatttacaag
      421 ttctacactt gtaatgtatc ctaaggggaa agtgagagaa atgattggac atacaacaga
      481 ggatcttact tggaagattt tcagaattat tgtccataat ggtaaagaag gtattcttca
      541 gtcgagtctc tggaaagagc ttgatatgac tagccgtaat ggttctaggt tagcaatgaa
      601 actggaaaag caatcacttg ttaagcgaga aagaattctc gaaaaaggac gatggaccta
      661 caaacttctt ccgatggaga tacctgttga tgccgaatct atcgataaag ccccatgtct
      721 tacttgtcca gtagagcaca tttgctccgt cgatagtaat tatagtccta acaattgtaa
      781 tctaatagaa gattggcttt tatcgtctat tgacacttca tctctactac catatagcgc
      841 tgaacttcac gagaaaaata tagaagctgc aaaagtatct gtgagccaac ctaaatcatc
      901 cgcaaaacgt catccagaac gagtaataaa aaataacaaa aaatgaagct ctcccagtct
      961 agaagagatt attatcgcaa gcttgcaaaa aatgatggat atagaagtag atcggcttat
     1021 aaactaaaac aattaaataa ttcttatcat atttttaaat cacgcgataa agtagttgat
     1081 ctcggttgtg ctccaggtgg atggttgcag gttctggaag aagaaattgg taatcaagga
     1141 aagatagttg gtatagatca aaaggaagta gttcccttaa gatttgcaac aattttgcaa
     1201 ggaagcattg aggatcctta catcgttgaa aagactataa aggttctaaa tggtcgtgca
     1261 gatgttgtgt tatctgatct cgctccgaat gtctgtggga tttgggatgt agatcatgct
     1321 agacaaattt ctcttacaag gagtgccctg actatagtaa gaaaaatact aaggaaaaat
     1381 ggctctgcaa ttttcaaggt atttgaagga caaatgctta aacaattgaa agacgacttg
     1441 gcgatgcatt ttgaaaatgt gcattattct aagccagatg ctagcagaag agagagtagc
     1501 gagttatatg tgatctgttt gaattttaga ggttaggaca tatacatttc cttaatcacc
     1561 aaataaaagt tttaattcct caagacttaa ttttgagccg gagtccattt ttttcttggc
     1621 ttcttccttg agcttgaaaa gtgtatcttt tggaagagca ttaccatatt cttctctttg
     1681 tcttttcctc atactggcca tataatcaag acgtccattg attttttcta attgcaatag
     1741 atcttcattg tattctttga ggtaaatttc gcgctccgca gggagctgcc gtttcaaatt
     1801 aaagagatgg ccaataatgt tgttaacttc tgaaattttc tgttgcgata atcgatgttc
     1861 ctcatcaagc aattttaacg aatttctgag attttcagac tctttatcat attctctcat
     1921 ttgatcttta ataactcgga ctgcctttag tgcttcaatt ttcatttgag tctcttttat
     1981 ggaagaaagt atctcattct tttctcgtag acttttgtat cgtttttcat cgagtgcttt
     2041 ctgcagcata tcaagtgatt gaaacaaatt tccttccacg tcagaggata ctctagattc
     2101 catcatgcta aggaagtctt ttgattggga aatcttctca cttattgaaa gtagctgaga
     2161 attcttggat tgaacttcat atctaatctg tttagttcgc tctaacaaat tattgagatt
     2221 gttcttttcg acgtgtatat tattatttat ggatcgaaat ctgttcctct caatatcaat
     2281 tattttctca cttaattctt ttactcggcc tgataagcga cgctttaaat taactagatc
     2341 atcccatcct agattttcta ttctagaaga tagattttga tctgttgtag tcaagttgat
     2401 tgtttccgcc attatgtgag gtttttatta cataaaagta tactgataaa tatagaaaag
     2461 aaatacttgt attctttaca aggtaaatga taactaatat gttcaaaagc cgactcagtg
     2521 aaaattactt ttatttggac atatatgctc tcctaatatc aaagcggtga ttaagaatta
     2581 gatataataa tattgctgtt gacaaaaagg ccttcgctaa atgctatctc atatagcgtc
     2641 cttactccac catttatctt tgtgagtcac ggagtccgca caattctaag ctactggaca
     2701 tgaattctga gttatattct aatatgaacc gactttgaga atgagtaact tttgacttgt
     2761 gattatagtc aaaatgacgt gctatttctt catgtattaa aagtatgcta gtatggctag
     2821 acacttttaa gttatgtact tctcttaact acttgcttct tttcaaattc ctttgataga
     2881 tagatttcat atatagcatt atatgctctt attattgaaa gaaaaaatgc caatgagtct
     2941 aattctagta tgtgccacag aaatcgttat catgtgccag gacaataaaa tcaagagatg
     3001 ttcatattta caaagagaaa ttatggtata aaattcttta ttgctgattc taatatttcc
     3061 tctcttccac accatctaac cagttctcgt aatttttgct gaggcttccc attttttatt
     3121 aaagatcttg caatatcaac tccttcttga aaatcccttg caacctttcc aattacaaga
     3181 gcagcggagg cattcaaaac aactatgtct tctttttcct gactggctac gccgaatata
     3241 acctgcagtg tatcccgaag tgattgttct ttcgaattta ttataatctg gctttgtttt
     3301 gcgaccttca tattgagcat cgttggatga agtatgattc gctttatttg attatcacta
     3361 atccaaaaaa tatcgttttc gcaagtatta gagagttcat caaggccatc atgagaatga
     3421 actatcatgg catcatttat gccactattt tgtatagcgt gcgcaatagg ttccagcaaa
     3481 tatgatgcaa aaactcctat gacttgtcct gttatattag tacaaggatt acttaaaggg
     3541 ccagcaatat tgaacacagt ccttatacca attatgtttc tagctgtggc aacccttctt
     3601 agagctgggt gaaaattagg agcatacaaa aaactaatcc cgatattttc tatagcacta
     3661 cacaccttct caggaggtga ttgcaagtca aaaccaatga aatctagaaa gtctgcgctt
     3721 ccgcagaatc ctgatactga acggtttccg tgttttgcta tcctcatacc tgctgagcta
     3781 gccactattg cagcggcagt gctaatgtta aatgacttta ttgcatctcc tccggtgcca
     3841 caggtgtcaa ctagagggcc ggttatctta ggtgagattt ttattgcatg tcgcttgatt
     3901 gtttgaagga tagctctaat ctcttcagat gtttcgcctt tcatagacat agcgaccaag
     3961 aaggatgcaa tggcagcttc ggagagttta ccttcaagaa tggaatttac agtttgatga
     4021 acttcttctt cagacagcgc tgatcttgaa actagtttta gaagtatagg acgaatatcg
     4081 aaattgtcag tactcatctc ttaacaatag aaacaaaatt aaaaagtatt tttttgcctt
     4141 cctttgttaa cactgattct ggatgaaatt gtactccttc aactaagtat tgtctgtgtc
     4201 taattcccat tatttcgccg tcatccaacg cccacgcggt cacctcaaga caattaggaa
     4261 tagtttttga atcaactact aatgaatgg
//
LOCUS       DATAAS010000442         2472 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4820059, whole genome shotgun sequence.
ACCESSION   DATAAS010000442 DATAAS010000000
VERSION     DATAAS010000442.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2472)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2472)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2472
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4820059"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            296..970
                     /locus_tag="VHF08_07040"
     CDS             296..970
                     /locus_tag="VHF08_07040"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068443.1"
                     /translation="MASRKDTERKDDTTTTTSTTSSTSDTSSSQQHQQRYGQYYSDQQ
                     QQQQREHQQAVSRALDETKDNIRKSTDEARSQIPRYTQAVSDYQEQTIQAAREIADTL
                     LESQKEIINSFQSAWRPYMENTSTTNWMSPRSMAELYANIVSSFANNVITATRLTNNM
                     IFGNMEAFKTSLQQAKDNAKEFSRIGVNTAKTFEQTSRDTARQTGGTTRASVETQEEA
                     DRSRRF"
     gene            1041..1535
                     /locus_tag="VHF08_07045"
     CDS             1041..1535
                     /locus_tag="VHF08_07045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068444.1"
                     /translation="MIDDKLPNSDRTIRSTIIDDRPDMYNILNENFTRALNEIAKFQP
                     QYLQSISNLQLDFIQTTKNTIQNIISAQKQMASNSNSSNRFWNIPPLSLPIPYIEQFA
                     RQLNDFTNNTIKVSNLNNQFTITILDAIRENLNIYNRATDELSRYRTNMVKAWNSFFA
                     VKQF"
     gene            complement(1642..2136)
                     /locus_tag="VHF08_07050"
     CDS             complement(1642..2136)
                     /locus_tag="VHF08_07050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068445.1"
                     /translation="MEESVIAKSTGEQEEKDMEPQDAALFRHLTSGKKISKSEADYRE
                     QTDNSEKNGQACIKCKFNLPDEKICHIVEGDINNEHGISKFFSPKGEGMLPGDIVWDF
                     VKKTGRKLNYEQGYVIGKGAEGYQCKDCKYYMYSHSCLLINGTFEPEMSCGFIVKIGN
                     GTDV"
BASE COUNT          907 a          454 c          370 g          741 t
ORIGIN      
        1 tataggcggc cgtatatttc cttcgaaatc aatattaaaa atgatctgta ataataatat
       61 ttgaacttca gaagactcat ttagcctcgt ttaaattcta tgcaaaaaga caataaagag
      121 acaaaatagg agtataataa tagccaaaag aagattgcat actttgatca caaaatagac
      181 aaattatatg agatttttga tgtttatatg aataacttat attagttatt ctgaaagctt
      241 tccttaataa ctgtatgtta acctttatgt agcatagtag cgaaataata aactaatggc
      301 gtcaagaaaa gatacagaac gaaaggatga taccactaca acaacttcta caacaagctc
      361 aactagcgat acatcgtctt cacaacaaca ccaacaacga tatggtcagt attattccga
      421 ccagcagcaa cagcaacaaa gagaacatca acaagcagtc agcagagcat tagatgagac
      481 caaggacaac attagaaagt caacagatga agcaagaagc cagattccac gttacactca
      541 agccgttagt gattatcaag agcagactat tcaagctgct agagaaatag cagatactct
      601 tctagaatca cagaaggaga ttatcaactc attccaatca gcatggagac catatatgga
      661 aaatacatct acaacaaact ggatgtctcc aagaagtatg gctgaactat acgcaaatat
      721 agttagtagt tttgcaaata atgtaattac tgcaaccaga cttacaaata acatgatatt
      781 tggaaatatg gaagcattca agacatctct tcagcaagca aaagacaatg caaaggaatt
      841 ttcaagaata ggtgttaata ctgcaaagac gttcgaacaa acatctagag acactgcaag
      901 acagactggt ggtacgacaa gggcttcagt agaaacacaa gaagaagcag atagatcaag
      961 aagattttag gaatttgtca aagaaaacta tcttctctct tattttttaa ttttcattag
     1021 caaaggatga taatctaaaa atgatagatg acaagctgcc caactctgat agaactatca
     1081 gatcaacaat aatagatgat agacctgata tgtataatat actaaatgaa aactttacta
     1141 gagcattaaa tgagatagca aagtttcaac ctcaatattt gcaatcaata tctaatttgc
     1201 agcttgattt catacagaca acaaagaata cgatccagaa tataatatct gctcaaaagc
     1261 aaatggctag caacagtaac agtagcaaca ggttctggaa tattcctcct ttatcattac
     1321 caatacccta tatagagcaa tttgcaaggc aattaaatga ttttaccaac aatacaatta
     1381 aagtatcaaa tctcaataat cagtttacta ttaccatact agacgcgata agggagaact
     1441 tgaatattta taacagagca acagatgaat taagtaggta tcgtactaat atggtaaagg
     1501 catggaattc gttttttgct gttaaacaat tttgagcaat agtataagca agcgttgatt
     1561 atcaaagtat gatgtaattc aatacatcct gcaattctgt attctatata taaatatcat
     1621 tgaatcagcc tcttgtacaa tttatacatc agttccatta ccaattttta cgataaatcc
     1681 acagctcatt tctggttcaa atgtaccgtt aatcaacaga caactgtgag aatacatgta
     1741 atatttacag tctttacatt gatatccttc tgcgcctttg ccaataacat agccctgctc
     1801 ataattaagt ttccttccag ttttctttac aaaatcccaa acgatatcac ctggcaacat
     1861 gccttcacct tttggagaga agaattttga aatgccatgc tcattattga tatcaccttc
     1921 tacaatatga cagattttct cgtctggtag attaaactta cactttatgc aagcttgacc
     1981 gtttttttcg ctattatcgg tttgttctcg ataatcggcc tcacttttgg agatcttttt
     2041 tccagaggtc aaatgacgaa atagggctgc gtcttgtggc tccatatcct tttcttcttg
     2101 ttcacctgtt gactttgcaa taactgattc ctccatctgt ctatcagaag aacgctattc
     2161 caataccgat atatatataa tcagcattta tcaattatca tttcgttaat aatagaagat
     2221 tactgaattg attttattcc tttcctttac ccatttcatc taacatgtat tatcctgatc
     2281 tatcatacat tagcataatt tcaaaaaatt gtattatctt tacaaaattc aataattcac
     2341 catcacaaca taattttctg aaaaagtaac cggtgcgtat gtcgttgtga aatgaaagca
     2401 tcaaacggct ctgttaactt aagcaaatca cctccttatt ataataatca acaaataggt
     2461 gaaaccagtt ta
//
LOCUS       DATAAS010000443         3864 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1047928, whole genome shotgun sequence.
ACCESSION   DATAAS010000443 DATAAS010000000
VERSION     DATAAS010000443.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3864
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1047928"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(733..2250)
                     /locus_tag="VHF08_07055"
     CDS             complement(733..2250)
                     /locus_tag="VHF08_07055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEX2068446.1"
                     /translation="MKTKSRMKPTAYSSSNTNSDINKTHNTNINNARSDDTNNSDYEY
                     IPHIEKKIKSGAFKISVYGLGHIGSALASVWLRQGAHVIGIDKSSKVLENAKIGKTHL
                     LEPGVNEAFTQGIKDDRFEVYEDLVKASLDSYFKMICVPVLATNGSADLAAIKDVATS
                     IGKGLKKFDVVALNPSVPPGTTEEVVLPILEKESGFKAETDFYMIYNPERIYEGRAIE
                     DIEQRYPAIVSGAGVRSLNIGTKIYSIIFKKGVIAMSSIRTAETEKLLEGVYRDVNIA
                     LANELAKFCEKVGIDFWEARDAANSQPFCHIHKPGVGVGGACIPVYPQFILHTADRMN
                     IDCNITRMGRNINDSMPAYSVERATELLKEQEEKNNRKKQGKEYLEKDFVNKGELIIT
                     LLGLAFRGGVSDTRLSPTYKVIEEFQKLKVKEIRIHDPLIINDPSLSGKENIILTSNL
                     NEAIQGTDLVMLIADHPEYRTLTPDDLGGAPIYDGRGILDRSKFDHSAFASIGVG"
     gene            complement(3441..3674)
                     /locus_tag="VHF08_07060"
     CDS             complement(3441..3674)
                     /locus_tag="VHF08_07060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF504 domain-containing protein"
                     /protein_id="HEX2068447.1"
                     /translation="MTRKGRLKEIFSKALYADNPNLYSVSYREFNSIIKVSLPEFLRL
                     SENFEIIPPNRIFLITREGKVLYRKFGTTTLIT"
BASE COUNT         1266 a          643 c          596 g         1359 t
ORIGIN      
        1 gagccaaaaa gtaaatgcat agcctaaaat caagatttta gatactatca ccacttgaaa
       61 tagcctaaaa acaaaaaaga actatgaaaa aggcctaatc cgtctttagg attttcaaaa
      121 aatagtatga tagaaataac tacttgttgg aaacgatcat caatgctata ttgtttaatg
      181 acttatttat cgattaatca aaagcttcat atcctttaaa agtacaaaaa tgataaaaga
      241 aggagaagga gtataagaag atagattacc tgctaggact attcggactc atttgattgg
      301 cgttggcatt aaatttatct tatatattat gatgtttata taataccttt aaattcaaag
      361 aaaagtaaag gttcctaaaa ttcatagaga tgatgatgaa ggatccttga ttgttcagct
      421 attagaagaa ttttgtttgt tatctaagtt aatgggagac tgaaatcata ccttcttatt
      481 tttaatcagc ggttatatga tggctagtga aggattggca atcagactca aagatattga
      541 atctttccat aagtttaaaa aatacacata agaaaaaata ctctaaaaca tgaatagcta
      601 ggggtatcta tatctttgac ttttagatat tacaaacttt aggcaacttt tacagtttta
      661 caaaatatat taaaaagatg atagatgtgt aaactagata attatccata tttctgatat
      721 atactgcttt agttaaccta cgccaatcga tgcaaatgct gagtggtcga attttgacct
      781 atcgagtatt cctcgaccat cataaattgg ggcgccgcca agatcatcag gtgtcaaagt
      841 tcgatactct ggatgatctg caataagcat taccaagtct gtaccttgta tagcttcatt
      901 tagattcgat gtcagaataa tattttcttt tcctgataaa gaaggatcgt taattatcaa
      961 gggatcatgg atacgaatct cttttacttt cagcttctga aattcctcaa tgactttata
     1021 agtaggtgat aaacgtgtat ctgaaactcc acctctaaag gcaagaccaa gcaaagtgat
     1081 aataagttct cccttattta caaaatcttt ttccaaatat tcttttcctt gcttttttct
     1141 gttatttttc tcttcttgtt cttttagcaa ttctgtggca cgttctacag aataagcggg
     1201 catagaatcg ttaatatttc tacccattct agtaatatta caatcgatat tcatccgatc
     1261 tgcagtatgg agtataaatt gaggataaac aggtatacat gcaccgccaa cacctacacc
     1321 cggtttatgg atatggcaga atggctggga atttgctgca tcccttgctt cccaaaaatc
     1381 aatgcctact ttttcgcaga attttgcaag ttcatttgca agagcaatat ttacatcccg
     1441 atatactcct tcaagtaact tttcagtttc agcagttctt atactactca ttgctattac
     1501 tcctttctta aatattatag agtatatttt agtccctata ttgagactcc taacaccagc
     1561 tcctgagact attgctggat atctctgttc aatatcttct attgccctcc cttcatagat
     1621 tctctcagga ttgtatatca tgtaaaagtc tgtttcggct ttaaaaccgc tttctttctc
     1681 tagaattggt aataccacct cttcagttgt tccaggagga acgctaggat tcagagctac
     1741 aacatcaaac tttttcaatc cttttccaat tgatgttgct acatctttta ttgctgccaa
     1801 atcagcggat ccatttgtcg ctaacactgg tacgcaaatc attttaaaat atgaatctaa
     1861 ggatgctttc accaagtctt catatacctc aaaacgatca tcttttatac cctgtgtaaa
     1921 tgcctcgttg actcctggtt ctagcagatg agtcttacct atttttgcat tttctaatac
     1981 ctttgaagat ttgtcgattc ctataacatg tgctccttga cgaagccata cagaagctag
     2041 tgcagagcca atgtgtccta aaccataaac tgaaatttta aaagcaccag attttatttt
     2101 cttttcaata tgtgggatgt attcataatc agaattattg gtatcatcgc ttctggcatt
     2161 attgatattg gtattatggg ttttattaat atcagaatta gtattggaag aagaatacgc
     2221 agttggtttc atacgacttt tagttttcat agggggtatt tcattattgt gttatatatt
     2281 ctgcgcctga acattactct tatttagcgt atacataaaa aagagtttga attatcaata
     2341 tctattttac atttttccat ttgaaattaa taataagtct tgatatgttg aataggattg
     2401 atagattatc taattacatt atccctatgc aaccaagagt aattgtcata ctatctatca
     2461 aatctatatt ttactattat atagtaacaa ctttttaaga cggttagcat tctttctcag
     2521 gagtgtatca tatgcttttc ttcttattat actagaatta gtcctacaca attgcttcca
     2581 taattcctca tggttatctg ctaaatttag agcggactaa atttgtgaaa ttctataaga
     2641 aaagatgtct cttttcaatc acatgagttt atggtttaat ttgcagtata tactctatta
     2701 tgcattaact cgatattatt atgttataat agtgtgtcaa tgaagttaat attattacac
     2761 tcttcttaac aattgattta acaaacaagg ctatatattt tcgctacgca tactaattgt
     2821 tcgattagcc gaaagagagg aacgatacat cgtatatgta taggctgcaa gtaaaggctt
     2881 gcagctccca tgggaacgat gagttgtcgt cttaggtaat aggttaacct acagcccaaa
     2941 ggttgtaggg gagtccaagt ctaagaggat aagggtaaac cacatggctg ctttggaact
     3001 tattgtagca gtcttgcagg gaaaaccaca tgtcttcgag tgctagtcgg acctttctct
     3061 tattcttatt gatagcttat atatgcttat atattcaaga atacaatcac taatgtttca
     3121 taattaaata agattttaca tatcaagaaa ataatagtaa cgcaatatac tttatcggaa
     3181 caataataca gaaaaagaaa gaggaggaaa agtggataaa ctaataatac aaatcatctt
     3241 ctaaaccatg tcgtatcaat atatttaata atcaaaatac atgataaagt tgtgatatat
     3301 aaaacgtctt aaaacataca aatacaaata tctgactatc aaaaattcgc atacttgcaa
     3361 atcaatttga cttgttttat taatatctta atttcaaaac aatcttttgc tttttatgtg
     3421 cattcagacg caatagttga ttaagttatt aatgtggtgg tgccaaattt gcggtatagg
     3481 acttttcctt cccttgtaat taaaaaaatt ctatttggag gaattatttc aaaattctcc
     3541 gaaagcctta agaattctgg caatgaaact ttaataatcg agttaaattc acgatagctt
     3601 actgaataaa ggttaggatt gtctgcatac aaagctttac taaaaatttc tttgagtcga
     3661 cctttccgtg tcatatttta aattttatta tctccgcttc cactgtccac tgtgaaggat
     3721 gctagagtta tcttacttat aaatttagta ttttagttca taacgtctat tggaatacat
     3781 acgtataatc aaaagagaaa gaaataacat tctatagata cctaaaatat gcttgtttaa
     3841 gatttctttt tcaattatta ttat
//
LOCUS       DATAAS010000444         8139 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4271428, whole genome shotgun sequence.
ACCESSION   DATAAS010000444 DATAAS010000000
VERSION     DATAAS010000444.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 8139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8139
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4271428"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(329..2110)
                     /gene="polX"
                     /locus_tag="VHF08_07065"
     CDS             complement(329..2110)
                     /gene="polX"
                     /locus_tag="VHF08_07065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase/3'-5' exonuclease PolX"
                     /protein_id="HEX2068448.1"
                     /translation="MKNAAIAKIFRKIGFIIEMNGNDVNATFKARAYKRTSDVIASLP
                     TNIEEIYRKERLEGLQKIPSIGKAIALKIEEYITTGTIKYYEELKATTPLNIDDFYDL
                     EGIGPKTIKVLYDKLKIKDLSGLEKAASEGRLRNIQGFSQNKEETILKKIKIFKNGRG
                     RHLIGEVYPIVKQIETRLSNVKGVKRAVAAGSFRRMKETVGDIDYVVVSDSPQNVMDY
                     FVEMPEVDEILGKGPSKTFVHLNNGMDADLFVVPEESFGSSLQYFTGSKEHGIAMRKI
                     ALAKGLHLNEWGIFDNDKKRVAGFTEEEVYQALDLDWIPPEMRENTGEIEIAKKRGSL
                     PSLIKYDGLKGDLQVHSNNTDGTMSIEDMSLAAKDKFGLEYIAITDHTKSLKLTNGLD
                     EKQILDQANKITEINDKIKMNPHIEDQKNHQKLLNNFRILSSAEVNIMKDGSLDIANN
                     VLDKLDIVGAAIHSNFAQPIEVQTERLIKAAQNPSIDIIFHPTGRRINKREGYPVNIL
                     KLIDVAKDTDTVLEIDAHYDRLDLKDDYIRMAVENNIKLVIDSDAHHPVHFAFLKFGI
                     GQARRGWAKQSDILNTLPADTLLKSLK"
     gene            2471..3724
                     /gene="ilvA"
                     /locus_tag="VHF08_07070"
     CDS             2471..3724
                     /gene="ilvA"
                     /locus_tag="VHF08_07070"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004794 - L-threonine ammonia-lyase
                     activity [Evidence IEA];
                     GO_process: GO:0006549 - isoleucine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEX2068449.1"
                     /translation="MNGQSIWDANKKQDFPTIEDIFRARELLNRTTVRKTPLQRSDTF
                     SKLTGTNIFLKLESLQRTGSFKVRGASVKISMLSKEQRRYGVIAASAGNHAQGVAYAA
                     SRNNISCTIIMPQNASPAKVAATKAYGATVVLRGLGYDECWIEAQEIAKKEGRTIIHA
                     FDDSHVISGQGTIGLELLEDLPELDQVYLPIGGGGLAAGIAIAIKSKKPSVKIIGVES
                     KAFPSMKESLSRGSLQNIKAGYTIADGISVKSPGKLTYEIANKYIDDVTLVDDSSILK
                     TMFLLMERSKMVIEPAGAASLAYLLSNGHPNKNKNVVSLLSGGNVDMYLLGQVVAKGL
                     MQMGRMLKIFIQLQDKPGALKTVVDGIAELNVNIVEVVHDRLSSNISAGTAGVYLSLE
                     MENEKHAERLIEFLKSKWLDFRIVS"
     gene            complement(3717..5114)
                     /locus_tag="VHF08_07075"
     CDS             complement(3717..5114)
                     /locus_tag="VHF08_07075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004421 - hydroxymethylglutaryl-CoA
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006084 - acetyl-CoA metabolic process
                     [Evidence IEA];
                     GO_process: GO:0010142 - farnesyl diphosphate biosynthetic
                     process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HEX2068450.1"
                     /translation="MPVGIDDLAIYIPKLYVDYKDFAKARGIDPQKLEHGIGIKKMAL
                     VDTNQDPACMAANACLKLMQRNNLHPDDIGRMYIATESALDESKAMNSFVIGMLEQVY
                     GESSFEHAGGIECKFACVSGSYALYDNANWIRAEENNGKAAIVIVSDIAKYDIGSAGE
                     YTQGAGAVAMLVKDNPRLLAFDQKVASTIIKNEYDFYRPFGKETPLVNGNYSNLLYLI
                     QVKKAFDSYKEKAIRTGLIELADGESITDHIDFFSVHLPYRRMGEKALAYLLRHEWRH
                     LPRWNHVIKEVGMEEPNQPDSRGTIESILADKEFMKADEKFRRAFMQTSFYNEVFENK
                     MASSLEASAIIGNLYTASMYMGFRSLLEFEDKKGTDLEGKRVGFGSYGSGSSAMVFSG
                     IIQPEYKEIVKRMNLEEETGPRTKLSMEEYKRLHGNERKFDDFLLNAHQEFVLTKIGG
                     STADKAGFREYSFVS"
     gene            complement(5304..6458)
                     /gene="mqnC"
                     /locus_tag="VHF08_07080"
     CDS             complement(5304..6458)
                     /gene="mqnC"
                     /locus_tag="VHF08_07080"
                     /EC_number="1.21.98.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic dehypoxanthinyl futalosine synthase"
                     /protein_id="HEX2068451.1"
                     /translation="MVQKITVILQKTSFLVQDLISKSDIGDILNCVLNDERLGFKECL
                     RLIKSDDVYAIGLVGNILRQRLYGNTVTFVNNIILNYTNVCVTYCKFCAFYRPPGHSE
                     SYTVPLEEIVRRVLVSREMFGITQVLIQGGHNPNLRVEYYEEAFKAIKTKSPSIGIHG
                     LSASEIDMIARVERSSTKEILARLKEAGLDSLPGAGAEILDDDVKAEISPLKLKSQEW
                     LQIMKEAHELGIKSSATMMYGTVETEEQRAQHIVKVAQLQEKTRGFMAFIPWSFEPNK
                     TQIQSEGQVRYPSGGLGLLKMIAISRIMYYGLIDHLQSSWLTNGIGMAQLALTYGADD
                     FGGTLIGEEVVSATGAKSTELTAHKIIDAVKQIGFRIAERNNFYQIIKYY"
     gene            6543..7646
                     /locus_tag="VHF08_07085"
     CDS             6543..7646
                     /locus_tag="VHF08_07085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX2068452.1"
                     /translation="MLTHISGGTPALEKALAGEELLYEDGVQLMNDENLFLLGSVADR
                     IRKRLKGDTVSFVSSYYLNYTNICAASCPLCAFYRKGNEFDAYTLTIEQILTRVSIAI
                     KQMGATEIHIVGGFHPKLGLDYYEDMIRTIKEEFPSVTIKALTPAEIFFISRLTRNSV
                     KEVLLRLKSAGLDALPGGGAEIFHPETRDVIVRGKCSGEEWLETAREAHNLGLRSNCT
                     MLFGHLEKPEHIVDHILKIRELHKKTKGFTTFIPLKFSLDNTELEQKEIITRESPSTY
                     DLRVIAVSRLLLANVLDNISVYWVALGKKLAQVALSYGGNDMVGTAFSEEIFKAAGKT
                     TGTSVQELVNLIKEIKRSPVQRDTFFNIIRKFN"
     gene            complement(7795..>8139)
                     /locus_tag="VHF08_07090"
     CDS             complement(7795..>8139)
                     /locus_tag="VHF08_07090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068453.1"
                     /translation="LGALRCLREIERVLKRGGIAVIATEYIINNKEHHEFFNRRTIYS
                     DLINKLEKLQLVEPLDLRLTTNTLDTVIDYSSAVYWDTSIDDKFKKTHPLILLRVKDI
                     LVTSVMLVFQKY"
BASE COUNT         2524 a         1513 c         1331 g         2771 t
ORIGIN      
        1 agaattagtc ttttctttat tatacctttt atcaatattg agattcaaac ctatttacta
       61 attgaacata gacaagtgag aaatcattct ctcatacatt acatcttttg atacaaatat
      121 gataatttca ataatataga atcattctgt attccgacct ataagcaatc aaaatattca
      181 tcattctata agacacattc tttcttcctc catagttcaa gtacaatcag aatattacat
      241 gttagcttct atcctctatc gactttcttt agacaaaaaa tactataata tcttcagtca
      301 ttatcacaaa ctatcatcaa caattcagtt acttcaggct tttaagtaat gtatcagcag
      361 gtaatgtatt aagtatgtct gattgttttg cccaacctcg tctggcttga cctataccaa
      421 atttcaaaaa tgcaaaatgg acaggatgat gagcatctga atcaattaca agtttgatat
      481 tattttcaac tgccattctt atataatcgt cttttaggtc aagacggtca taatgagcat
      541 caatttctag aacagtgtct gtatcttttg ctacatctat caattttagt atattaacag
      601 gatatccttc tcttttattg attcgtctac ctgtaggatg aaaaataata tcaatactag
      661 gattctgtgc agcttttatt agtctctcag tttggacttc aattggttgt gcgaaattag
      721 aatggattgc tgctcctact atgtcaagtt tgtctaatac attattcgca atatcaagcg
      781 atccatcctt cattatattt acttcagcag aggacaatat tcgaaaatta ttcaataatt
      841 tttgatgatt tttttgatct tcaatatgcg gattcatttt tatcttgtca tttatctctg
      901 tgattttatt agcttgatcg agtatttgtt tttcatcaag tccattagtt aatttcaagc
      961 tttttgtatg gtctgtgata gcaatatatt caagtccaaa tttatccttt gcagctagag
     1021 acatgtcttc tatagacatt gttccatcgg tattgttact atgaacttgc aaatcaccct
     1081 tcaagccatc atattttatt aaacttggaa ggctgcctct tttttttgca atttcaattt
     1141 caccagtatt ctcacgcatc tcaggaggaa tccaatctaa atctagcgct tgataaactt
     1201 cttcttcagt aaaacctgca acccttttct tatcattgtc aaagattccc cattcattta
     1261 agtgaagacc ttttgcaagt gctatctttc gcattgcaat accatgttct ttgctcccgg
     1321 taaagtattg cagagaggaa ccaaaacttt cttcaggaac aacaaacaga tctgcatcca
     1381 ttccattatt caggtgcaca aatgttttgc ttggtccttt accaaggatc tcatcaacct
     1441 caggcatttc aacaaagtaa tccattacat tttgaggact atcagatact acaacgtaat
     1501 caatatctcc tactgtttct ttcattctcc gaaaagaacc tgccgctaca gctcttttta
     1561 ctcctttaac gttggataga cgagtttcta tttgttttac aataggataa acctctccta
     1621 taagatgtct acccctacca ttcttgaata ttttaatctt ttttagaatt gtttcttctt
     1681 tgttttgaga aaaaccttgg atatttcgaa gccttccttc tgatgcagct ttttcaagac
     1741 ctgataaatc tttgattttt aatttatcat aaagaacttt aattgttttt ggtccaatac
     1801 cttctagatc ataaaagtcg tcgatattta atggagttgt tgcctttagc tcttcatagt
     1861 actttattgt tcctgtagtt atatattcct caatttttaa ggcaattgct tttccaattg
     1921 atggtatctt ttgtagtcct tctaatcttt cttttctgta tatttcttca atgtttgtag
     1981 gcaaacttgc gatgacgtca gatgttcgct tatatgctct ggctttaaaa gttgcattaa
     2041 catcatttcc attcatttct atgataaatc caattttacg aaatatcttt gctatggctg
     2101 cattcttcat aattattatt atagtattat aaaagagata gtaatatgtc tagatctaaa
     2161 ctatagacag tatctacaaa ggatctataa tacttcaaat actactacta ccactgccaa
     2221 tagatcataa gcctgtcata tatgactaga gtcatgacca ttaaacgatt aatatcataa
     2281 ctagttagta tactaagaat aaattctgta tgtgattata gtcacttgta gccatagtag
     2341 ctatatcgtc aaggcgatag cagcttatac atttataatc tatataatag atatcatcat
     2401 aaaggtattt gagtaaacta tccacaaaat tataattaag gcataaagtt gattgcattg
     2461 tccgatctta atgaatggcc aaagtatatg ggatgcaaac aaaaaacaag actttccaac
     2521 tatagaagat atatttagag ctagggaatt actaaataga acaactgtta gaaaaacgcc
     2581 attacagaga tctgatacat tttcaaaact tactggaacc aatattttcc tcaaactcga
     2641 atctctgcag agaacaggct ctttcaaagt tcggggggca tctgttaaaa ttagtatgct
     2701 atccaaagaa cagagaagat atggcgttat tgctgcatca gctgggaatc atgcgcaagg
     2761 agttgcatat gccgcatcaa gaaataatat ttcatgtaca attattatgc cacagaatgc
     2821 gtcgccagct aaagtagcgg ctacaaaagc atatggagca acagtagttt tacgtggact
     2881 aggttatgat gaatgctgga ttgaagctca agaaattgct aagaaagaag ggcgcacaat
     2941 aattcacgct tttgacgatt ctcatgtaat atcaggccag ggaacaatag gtctagaact
     3001 attagaagac ttgccagaac ttgaccaagt atatttgcca ataggaggtg gtggactagc
     3061 ggcaggaatt gctattgcca taaagtccaa aaaacccagc gtgaaaatta tcggcgtaga
     3121 atctaaagca tttccttcaa tgaaagaatc actttcaagg ggttctttgc aaaatataaa
     3181 agcaggatat accattgctg atggtatatc tgtaaagtct cctggcaaat tgacatatga
     3241 aatagccaat aaatatatag atgatgtaac attagtggac gattcttcaa tattaaagac
     3301 tatgttttta cttatggaaa gatctaaaat ggttatagaa cctgctgggg ctgcaagtct
     3361 agcatatttg ctttcaaatg gccaccccaa taagaataag aatgtagtgt cattactctc
     3421 gggtgggaat gttgacatgt atttacttgg tcaggtggtt gcaaaaggtc ttatgcagat
     3481 gggcagaatg ctcaaaattt ttatacagtt acaggacaag ccaggagcac tgaagacagt
     3541 agtggatggt attgccgaat tgaatgttaa tattgttgaa gttgttcacg atagattaag
     3601 ttctaatatt tcagctggaa ctgcgggtgt ttatctcagc cttgaaatgg aaaatgaaaa
     3661 acatgcagaa cgtttaatcg agtttctaaa gagtaaatgg ttagatttca gaatagttag
     3721 ctgacaaagc tgtattctct gaatcctgct ttgtcagcag tgctgccacc aatctttgtt
     3781 aagacgaatt cttgatgagc attcaaaaga aaatcatcga atttcctttc attgccatga
     3841 agtctcttat attcttccat ggataacttt gttcgtggtc cagtttcttc ttcaagattc
     3901 attcgtttta caatctcttt atattctggc tgtattatgc cactaaatac catagcactg
     3961 ctaccacttc cataagatcc aaaacctact ctcttgcctt caagatctgt cccttttttg
     4021 tcttcaaatt caagtaaact tctaaatccc atgtacattg aagcagtgta gagattccct
     4081 ataatagcag atgcttcaag tgagcttgcc attttgtttt caaaaacctc attataaaaa
     4141 gaagtttgca taaatgcacg tctgaatttt tcatcagctt tcataaattc cttgtcggca
     4201 agaatcgatt caatggtacc ccttgaatct ggttgatttg gctcttccat tcctacctct
     4261 tttataacat ggttccaacg tggaagatgt cgccattcat gccttaataa ataggctaat
     4321 gccttttcac ccattcttct ataaggaagg tgtacactga aaaagtcaat gtgatctgta
     4381 atagattcac catccgcaag ttcaatcaat cctgttctaa tagccttttc tttatagcta
     4441 tcgaatgctt tctttacttg aatcaaatac aatagattag aatagtttcc gttaacaaga
     4501 ggagtctctt ttccaaaagg tctgtaaaaa tcatattcat tcttgatgat tgtagaggca
     4561 actttttgat caaaagctag taatctagga ttatccttaa ctagcatggc aacagcaccg
     4621 gctccttgtg tatattcacc agctgaaccg atatcatatt tggcaatatc gcttactata
     4681 acaatagcag ctttgccatt attctcctct gctctgatcc aatttgcatt atcatatagt
     4741 gcataagatc cactgacaca tgcgaattta cattcaattc cacctgcgtg ttcaaaggaa
     4801 ctttctccat aaacctgttc taacattcct atgacaaaag aattcattgc cttggattca
     4861 tcaagagcag attcggttgc tatatacatt ctccctatat catctggatg caaattgttt
     4921 ctttgcatta attttaaaca tgcattagca gccatacagg ctggatcttg attagtatca
     4981 actaaagcca tcttttttat tccgatacca tgctctaact tttgggggtc aattcccctt
     5041 gccttggcaa aatctttata gtcgacataa agtttcggga tatagatagc caggtcatca
     5101 attccaactg gcatacgaca gaaactatat aaatagacat ttaaacgtat ttctgatttg
     5161 atttgacaaa tgatagacaa tccattgaca tagaaattct tctgatcatt gtattgtcat
     5221 actcaatcaa atattttgag cttacactac acatggcacc tcggaaggaa ggaaggaaga
     5281 tcctttaagt tatttgaata attttaataa tattttataa tctgatagaa gttatttctt
     5341 tctgcaattc taaaaccgat ctgcttgact gcatctataa ttttatgtgc agtaagttcg
     5401 gttgacttgg cacctgttgc actcactacc tcttcgccga taagagtgcc accaaaatca
     5461 tctgcgccat aagttaacgc caactgcgcc atgcctattc catttgttag ccatgatgat
     5521 tggagatgat ctattaaacc gtaatacatt attctagaaa tagcaatcat ttttaatagt
     5581 cctaagcctc ctgaaggata tcttacctgt ccttccgatt gtatctgcgt tttgtttggc
     5641 tcaaaactcc agggaataaa tgccataaat ccccttgttt tttcctgtaa ttgtgcaact
     5701 tttacaatat gctgcgctct ttgttcctca gtttcaactg taccatacat cattgtagct
     5761 gaagacttta taccgagttc gtgagcctct ttcattatct gaagccattc ttggctcttt
     5821 aacttgagag ggctgatctc cgcttttacg tcatcatcaa gaatctcagc gccagcacca
     5881 ggaagagaat caagtcctgc ttcttttaat ctggcaagaa tttcctttgt actgcttctc
     5941 tcaactcttg caatcatatc aatttctgat gcagaaagtc catggattcc tatagatggg
     6001 gattttgtct ttatcgcttt aaaagcctcc tcataatact caaccctcaa gttaggatta
     6061 tgtcctccct gaatcagtac ttgggtaata ccgaacatct ctcttgaaac caaaacacgt
     6121 cgaacgattt cttctagcgg aacggtataa gattcactat gtccaggagg acgatagaat
     6181 gcgcagaatt tgcaataagt aacacaaaca tttgtatagt ttagtataat attatttaca
     6241 aatgtaacag tatttccata cagtctctgc cgcaatatat ttccaacaag tcctattgcg
     6301 tagacgtcat cagatttgat tagtcttaga cattctttga acccgaggcg ttcatcattt
     6361 agtacacaat tcaaaatgtc cccaatatca gatttactaa ttagatcttg caccaaaaag
     6421 gaggtttttt gcaatattac cgtaattttt tgaaccatca atgctattta ttctttacaa
     6481 gcatttccct cgcagttagt atcaaatgtt ttatattaac ttcaaatgat agaacattta
     6541 atttgttaac acatatttca ggaggaactc ctgctttaga aaaagcactt gctggcgaag
     6601 aattattata tgaagatggt gttcagctga tgaatgatga gaacctattt ttgttaggat
     6661 ctgtagctga taggattcgt aaacgcctta aaggtgatac tgttagcttt gtcagttctt
     6721 attatctaaa ttatactaat atttgtgccg caagttgtcc attgtgtgca ttttacagga
     6781 agggcaatga attcgatgct tataccttaa ctatcgaaca gattttaaca agagttagta
     6841 ttgctataaa acaaatggga gcaactgaaa ttcatattgt tggtggtttt catccaaagt
     6901 taggtcttga ttattacgag gatatgataa ggacaataaa ggaagagttt cctagtgtga
     6961 caattaaagc attgactcct gctgaaatat tttttatatc tagacttact cgaaactcgg
     7021 ttaaagaagt cttgttgaga ttgaagtctg ctgggttaga tgcgctaccg ggcggcggag
     7081 ctgagatttt tcatcctgaa acccgagacg taattgtcag aggaaaatgt tctggtgaag
     7141 aatggcttga aactgctcgt gaggcacaca acttgggatt aagaagcaat tgcacgatgc
     7201 tttttggcca tctagaaaaa cctgaacata ttgtagatca tattttgaag attagagaac
     7261 tccataaaaa aacaaaagga ttcaccacct ttattccctt aaaatttagt ttggacaata
     7321 cagaattaga acaaaaagag ataatcacta gggagagtcc ttctacttat gatttgaggg
     7381 ttattgcagt atcgcgactc ttgttagcaa atgttcttga taacatctca gtatattggg
     7441 ttgcgttggg aaagaaactg gcacaggtcg cattgtcata tggaggcaat gatatggtag
     7501 gaaccgcatt ttcagaagaa atatttaagg ctgcaggcaa aactacagga acttcagtcc
     7561 aagaactagt taatctaata aaagaaatca aaaggagccc tgttcagaga gacacattct
     7621 tcaatatcat tagaaagttt aactaaatct tcacctcttc attttttaat aattcattat
     7681 aaatagtatt tcttgtaaat gtatgtctcg aattgtcatt caatacccct cttctctcta
     7741 taaaacaata ttatccactt tctaaggatc aatgtaatat tatagaatag ttgatcaata
     7801 tttttgaaaa acaagcatta ctgaagtaac tagtatatct ttaaccctaa gaagtatcaa
     7861 cggatgggtt tttttaaatt tatcatctat agatgtgtcc caataaacgg ctgaagaata
     7921 atcgataacc gtatctaatg tatttgttgt tagtcttaaa tcaagaggtt ctacaagttg
     7981 cagtttttct aatttattga ttaaatcaga atatattgtt cgtctgttaa agaattcatg
     8041 atgttcctta ttattgataa tgtattcagt cgctattaca gctattcctc cacgctttaa
     8101 aacacgttct atctccctta aacaccttaa agctcctaa
//
LOCUS       DATAAS010000445         3588 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2658472, whole genome shotgun sequence.
ACCESSION   DATAAS010000445 DATAAS010000000
VERSION     DATAAS010000445.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3588)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3588)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3588
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2658472"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(249..2363)
                     /locus_tag="VHF08_07095"
     CDS             complement(249..2363)
                     /locus_tag="VHF08_07095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEX2068454.1"
                     /translation="MQEHGNRNKSNSRTNRLINESSPYLLQHANNPVDWYAWGEDALQ
                     RAKKEDKPIFLSIGYSACHWCHVMAHESFEDEEIAKIMNENFINIKVDREERPDIDDI
                     YQKVCQLATGTGGWPLSIFLTPDQRPFYAGTYFPKYSRYGMPGFGTILNQLAEAYKSK
                     KQEIHSATSEFMHALSNTAKDVQGKGENIERSTIDEAAVGLLQMGDPIYGGFGQAPKF
                     PNTSNLLFLLRYYDISQISRFKDFVMFSADKMAAGGIHDHLGGGFARYSTDQKWLVPH
                     FEKMLYDNALLTQLYAELYQISGNVKYLKIVDKILEYVIAEMTSPDGGFYSAQDADSE
                     GEEGKFYVWSKQEIVNVLKDITTSDIVCEYYGVTEAGNFEGKNILNIRNSLTHLAQKY
                     HMTTEAIEGVINDASKRLFEVRSKRVRPGQDDKILTSWNGLMISGFAKGYKITGNKKY
                     LDAAINAVNFIESKIAKDDGRLQRAYKDGISKLNAYLDDYAFYVNGLLDVFEIYAQPT
                     YLQKAIVYTNFMIQHFWDPEGGSFFFTSDDHEQLIVRTKSFYDLAIPSGNSMAASNLL
                     RLYHLIQNNDYLYKAEHIMQEGAKTASENPFGFGHLLIAMYLYIKKPVEITIIRNDEK
                     QRANSEMVNWLNRQFIPNGIIAIIENKSQLQELQNYPFFKGRNLVQENQKDSDYALVC
                     RNFSCSLPINSIQELERLVRMP"
BASE COUNT         1112 a          641 c          549 g         1286 t
ORIGIN      
        1 gaaagttctc ttactataaa tttcaccatc tatacctcca tttacttatt aacaataatc
       61 tttttttgct ctatgtttac acatgacaat caaaataaaa taataaatcg gatacatttt
      121 gcaggagcaa actaatatta agttcatcgt caaataaaat aataacaatt tgttgttaat
      181 caaagctttt gataatccac ttctggttct acgctatttg tttcatccta attattatta
      241 ttttgtaatt aaggcattct gacaagcctt tccaattcct gtatggagtt tataggaaga
      301 gaacaggaaa agtttctgca aactaatgca tagtcagagt ccttttgatt ttcctgtact
      361 aaatttcttc ccttaaaaaa tggataattt tgtagttctt gtaattgtga tttattttct
      421 atgatagcaa taataccatt aggaataaac tgtctattca accagtttac catttcagaa
      481 ttcgctctct gtttttcgtc gtttcttata attgttatct caacaggttt ctttatatag
      541 agatacatcg ctattaatag atgtccaaac ccaaatggat tttctgatgc agtttttgcg
      601 ccttcttgca taatatgctc tgccttgtat aagtaatcat tgttttgaat taaatgatat
      661 agcctaagga ggttcgatgc agccattgaa ttaccgctag gtatagcgag atcgtaaaaa
      721 ctctttgttc tgacaatcaa ctgctcatga tcatcggagg taaagaagaa actgcctcct
      781 tcaggatccc aaaagtgctg gatcataaag ttagtgtaaa cgattgcttt ttgaagatac
      841 gttggttgag catagatctc aaatacatcc aataatccgt taacgtaaaa tgcataatca
      901 tcaagatatg catttaattt tgaaattcca tccttatatg ctctttgtaa tctaccatca
      961 tcttttgcga ttttagattc aataaagttt actgcattta ttgcagcgtc aagatacttt
     1021 ttatttccag taattttata tcctttggca aaacctgata tcataagtcc attccaagaa
     1081 gtcagaatct tatcgtcttg ccctggcctc actcttttac ttcttacttc aaaaagtctt
     1141 tttgaggcat cattgataac gccttctatt gcttcagttg tcatatggta tttttgtgcg
     1201 agatgggtta aggagtttct aatattgaga atatttttac cttcaaaatt acctgcctct
     1261 gtaactccgt aatattcaca aacaatatca gaagttgtta tatcttttaa gacattgaca
     1321 atttcttgtt ttgaccaaac ataaaatttg ccttcttcac cctcagaatc agcgtcttga
     1381 gcagagtaaa atccaccgtc gggagaggtc atttcagcaa ttacatattc caagattttg
     1441 tccactatct tcaagtattt tacattacca ctgatttgat aaagttccgc atagagttgc
     1501 gtcaacaaag cattatcata aagcatcttt tcaaagtgtg gaacaagcca cttttggtct
     1561 gttgagtatc tagcgaatcc tccgccaaga tgatcgtgaa taccaccagc agccatctta
     1621 tcagctgaaa acatgacaaa atctttgaaa cggcttattt gtgaaatatc atagtaacgc
     1681 agaagaaaga gaagattgga tgtatttgga aattttggtg cttggccaaa accaccgtat
     1741 ataggatctc ccatctggag cagaccgaca gctgcctcat ctattgttga tcgttcgata
     1801 ttttctcctt ttccttgtac gtcttttgct gtatttgata aggcatgcat aaattcagag
     1861 gtggcagagt ggatttcctg tttttttgat ttgtatgctt cggctagctg atttaatatc
     1921 gtcccaaagc caggcatacc atatctgcta tattttggaa aatatgtacc tgcatagaaa
     1981 ggtctttggt ccggtgtcag gaatatagag aggggccagc cacctgttcc ggttgcaagt
     2041 tggcaaactt tttgatatat atcatctata tctggtcttt cttctctatc tacttttata
     2101 ttaatgaaat tttcgttcat tatcttggca atttcttcgt cttcaaacga ttcatgggcc
     2161 atcacatggc accaatggca cgcgctatat cctatgctaa gaaatatagg cttgtcttct
     2221 ttcttggctc tttgaagagc atcttctccc catgcgtacc agtcaacagg attattggca
     2281 tgctgtaaaa gatatgggct actttcgtta ataagcctgt ttgtcctaga gttactctta
     2341 ttacgattgc catgttcttg cattatagaa agttagcaat aatgctattt atatcatgta
     2401 ttagaaaggt gatgcgataa tcttattgta tatcaccaag tatgaaatct gcattttaag
     2461 agtattagaa ccaatcgaga caagattggc gttaaataca aatctaaaat aaaaatgtgt
     2521 tagatatgta catcttgtca ttacctattt tatctatatg ttttgcattt accaacgtac
     2581 tattcttaga tatgatatgc caataaataa tgccatattt attataatga cggtaaagtc
     2641 atatttatag acaatattgg agaggattag tgtcttgcaa tcatatttta catactcact
     2701 tttcttttga tgcaacaaga tgatgactat tgtaaaatat tatcgtctag aataaatcct
     2761 aatgtcttta ttgttctaac tttttggcat tgatcacaat accaatactg gacaattttg
     2821 tcatccatat tatcgttttt tatattatat gatctatgac cacattcctt taatataaca
     2881 tagtaagaca tcattgaagt aatttcccac ctagtttcca agatctgtct agcattttta
     2941 tttctccgtc ctcttttccc aataatatca cagatatgtt acaaatagta atcatttcct
     3001 ataccatcac ttttctatat attaatacaa tccagttgtt taaaatgcat taacgttact
     3061 ttttattaaa tagtcgataa aaataagcta ctattataat gattaattcg aacataggtc
     3121 ttaactaata ttatgacaga gaaaaaataa aaacgaaaag gataatccat cagcaaatag
     3181 cttgatcaaa atccagataa gaccataaga gtaactacaa tcaacaatca aagaaataga
     3241 catcaaaacc gaaagttaga aagagtgaat agatactagg atcaggttgt gctaacttat
     3301 ttaggattaa tagcaagtca ttgagattaa gttcattttt gtattccttt cctttatttc
     3361 atatttatta atgccctcca tttttcttca aatagcatcc tttgtctttt gttcctcgat
     3421 atctcgtata atcgccaagt ttctttacgt ataccggaaa tgtatgtttc agtcctcata
     3481 attcctcaag tcggtagggt ttagaataaa catggatagt aaaattagct tcaaatcttt
     3541 acaatattca ttttggatgt tcgataaaga tagaatatca gtttcagc
//
LOCUS       DATAAS010000446         3753 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4822541, whole genome shotgun sequence.
ACCESSION   DATAAS010000446 DATAAS010000000
VERSION     DATAAS010000446.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3753
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4822541"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(464..952)
                     /locus_tag="VHF08_07100"
     CDS             complement(464..952)
                     /locus_tag="VHF08_07100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068455.1"
                     /translation="MSTAMQKIVNFWYRYENLNLKITFVLISLQLLHLYWLTTDVVLQ
                     RIYGESFLLFPKILLPVFVVIDYIEIPALVSGITFYSLSIYKHQENSWKNSLFLALLA
                     VQVVHIFWITDEIVYDAFFETRLVEFPVYIAWIAILIDYLELPVMADLFYKIIKGEKK
                     WR"
     gene            complement(1647..2198)
                     /locus_tag="VHF08_07105"
     CDS             complement(1647..2198)
                     /locus_tag="VHF08_07105"
                     /inference="COORDINATES: protein motif:HMM:NF024804.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEX2068456.1"
                     /translation="MKINNPSANNIGNNYYYELNDIQNKLLKCINESPGIRYRELLRL
                     TRLSNGVLTYHLKILEEMRQINTIRQKKATRYYSIAIPIEELRIIAHLRIRIERAIII
                     FILEHDLCTFDEIVEYSKKAPSTISWYLRRLCEDGVISIHYGEYQLYTIVDRKLVNQI
                     LYKYNETFTDKLVNNFIDMADNL"
     gene            complement(2200..2613)
                     /locus_tag="VHF08_07110"
     CDS             complement(2200..2613)
                     /locus_tag="VHF08_07110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068457.1"
                     /translation="MQSKKASIQDVLTSKPKLLIVVSALVLAILSMPVIIPHINHPSM
                     IYHIILHIISLIIAIFLTVVSMVAYKKTKSTRIFFMTLGFFSLIIAEFLYLFNATENI
                     EEIALPLVHIELPHVILLTMLTLFSIGILKVNMRL"
     gene            2732..3376
                     /locus_tag="VHF08_07115"
     CDS             2732..3376
                     /locus_tag="VHF08_07115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068458.1"
                     /translation="MFKPNLFLLGAIATATILVSSTGIQNAAFAHQRQLFTIGDKDYL
                     FVVGSLNEPIFVDDKSGVDFAAYWPNATDPLNSDANGTRPIEGLEKMLKVEISAGNKN
                     KTLDFEPAYGEPGNYEAPFFPTVETTYNYTLFGDINGTAFRATWTCNPAGAESEPMSD
                     NSTVQISEGVTRKGMVGGFGCPQSKTDAGFPEPFMSNNEIVNKLEQLENATKTQ"
     gene            3540..>3753
                     /locus_tag="VHF08_07120"
     CDS             3540..>3753
                     /locus_tag="VHF08_07120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068459.1"
                     /translation="MKTQRAKKRLVPSNKNIILLLLVITIVTFSSFFYFYHTSSFLAY
                     SQEGSDDSSSSSEYHPQTEAVTSTYDG"
BASE COUNT         1304 a          594 c          584 g         1271 t
ORIGIN      
        1 ctcggcaatc tcttgttcta tttgttgttt tttcatcatg attgcctgca aattctgttg
       61 aatttgttgt aagcgcaata tttgctctgt tatccatggt ggtagaagtt tttcttcact
      121 caagccagtt cacttgttag catacaaatc atgaccataa aataatgtgt agttgctttt
      181 ctaagtattt gaattgaaga tacttgttta ataaatggca tcttcctctg catgtgtata
      241 attataatca aagaattcat ttaagctcat cgtcgctgtt aaatatacgg acgattatta
      301 ctgctatatc gacgtactac agcaacaatc aatatttgct gatagaataa gtaatctaga
      361 tgttgagtct tttgtcatca tcatcacata aattgtctgg ccataaggta cttatgggaa
      421 aacttaggat gttaatgaaa tgtttattaa aatcaaaggt aacctatcgc cactttttct
      481 cacctttgat tattttataa aacaagtctg ccataacagg taactccaga taatctataa
      541 gtatcgcgat ccatgctata tatacaggaa attctaccaa gcgagtttca aaaaatgcat
      601 catatactat ttcatcagta atccagaata tgtgaactac ttgtactgcg agcagtgcga
      661 gaaataaaga attcttccat gaattctctt gatgcttgta aatactcagc gaataaaaag
      721 taattcctga aactaatgca ggaatttcaa tataatctat caccacaaaa acaggtaaaa
      781 gaattttagg aaataaaagg aagctctctc catatattcg ctggagaact acgtctgtag
      841 taagccagta taaatgaagc aattgtaaag agatcaagac aaaggttatc tttagattta
      901 gattttcata tcgataccaa aaattgacaa ttttctgcat agccgtactc atatatgact
      961 ggcaattaag atattataac caaatagggt gatcaataat attagcagta aattatagaa
     1021 taagagttta tagtaaaaat acttttaata cagcagaatt ataaagatat taagactctc
     1081 taatacaaca caacaataga ccacttgatt atcaaagaga taatcatgac ttatgattat
     1141 gaagtctgtt tagtttgagt gttaccggct actggaattt acctaaaaat taactatttg
     1201 ttcttatgat atttacgcca attcctctaa cttacaatct gtaataccaa gaaatcaata
     1261 caaagaccac gagtattagt agaaatgata cctgtataat tggcatcatt tcaagaaagt
     1321 aatcaatcaa cagagctata gaggctgata ccagtagcag taacaaccac aaagtatatt
     1381 ggtatggcct cttggatctg tcaatcacta ggcagagata atgggtatat tagaatttaa
     1441 ctctgtttat ggactcgatt aatattatat attatatgat tattattgga aaagtattat
     1501 atttttacta tctctatgaa ccgcatatgg ttacaaagca gctttattcg tgtttgttct
     1561 taccatagta gaattcaatg tctttgatgt taatatattt cctgataatt ataaaaagag
     1621 aggtttggtt atgaatgtgt tatttattat agattgtcag ccatatcaat gaagttattt
     1681 actaatttgt ctgtaaatgt ctcattatat ttataaagta tctgattaac taattttcta
     1741 tctactattg tatatagctg atattccccg tagtgaattg atatgactcc atcctcgcaa
     1801 agtcttctca gataccacga tatagtagat ggtgctttct ttgaatattc tacaatttca
     1861 tcaaaagtac ataaatcatg ttcaaggatg aatattatta tcgccctttc aatacgaatt
     1921 ctcaaatgtg cgataatacg taattcttca atcggaatgg caatagaata atatcttgtc
     1981 gccttcttct gtcttatagt atttatctgt ctcatttctt cgagtatttt caggtggtat
     2041 gtcaaaacgc catttgaaag acgtgttaat cttaaaagct ctctgtatct aatgccagga
     2101 ctttcattta tacattttaa gagtttgttt tgaatatcat ttaattcata ataataatta
     2161 ttgcctatat tattagcaga aggattattt attttcatat tataacctca tatttacttt
     2221 taatattcct atgctaaaca aagttaacat cgtcaagaga attacatgtg gtaattctat
     2281 atgaactaat gggagcgcaa tctcttctat attttcagtt gcattaaaaa gatataaaaa
     2341 ttcagctata atcagagaaa aaaaaccaag agtcataaaa aatatccttg tactttttgt
     2401 ctttttgtat gcaaccatag atacgacagt aaggaaaatg gctatgatga gactgattat
     2461 atgcaatata atatgataaa tcatagatgg atgattaata tgtggaataa taacaggcat
     2521 ggataatatt gctagtacca gagcagacac tacgattaat aacttaggct tgctggttaa
     2581 tacatcctgg atagaagcct ttttagattg catatatata ttatgtaatt tataataaaa
     2641 tcagctatta aaagtaaatt ggtacaacta tcgaattagt tcgattcctg tactagatcg
     2701 cttaaataat tttgaaaata gaactagtgc aatgttcaaa ccaaacctct ttttacttgg
     2761 tgcaattgct actgctacta tacttgtttc ttcaacaggt attcagaatg ctgcatttgc
     2821 ccatcaaaga caattattta caattggaga taaagattat ttgtttgtag ttggatcttt
     2881 gaatgagcca atctttgttg atgacaaatc aggtgtggac tttgctgcct actggcctaa
     2941 tgcaacagat cctttgaatt ctgacgcaaa tggaacaaga cctattgaag gtctagaaaa
     3001 aatgttaaaa gtagagatat ctgctggaaa taagaacaag acactagact ttgaacctgc
     3061 atacggagag ccaggtaatt atgaagcacc attctttcca acagtagaaa ctacatacaa
     3121 ctatactcta tttggtgata ttaatggtac tgcatttaga gccacttgga cttgtaatcc
     3181 agctggagct gaatcagaac ctatgtcaga caactccaca gttcagatct cagaaggagt
     3241 tacaagaaaa ggaatggtcg gaggatttgg atgtcctcaa tcaaaaactg atgctggatt
     3301 cccagaacca tttatgtcaa ataacgaaat agtaaacaaa ctagaacagc ttgaaaatgc
     3361 cactaaaact caatgaatat agaaatacga aatggatata ctaacagtac acacacatat
     3421 atcatctttc tttttttctt tcttcttgac attaaattaa agtctttgtt atgctatttt
     3481 atagtcaaca tcaacatttt aagagcagta tttcgattaa tgatcaaggc gcataaagaa
     3541 tgaaaactca aagagctaaa aaaagattgg tgccttcaaa taaaaatatt atcttattac
     3601 tattagttat tactatagtt acattttcat catttttcta cttctaccat acatcatctt
     3661 ttctagctta ttcacaagaa ggaagtgatg atagtagtag tagttcagaa tatcatcccc
     3721 agacagaagc agttacttct acttatgatg gtt
//
LOCUS       DATAAS010000447         5867 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1052406, whole genome shotgun sequence.
ACCESSION   DATAAS010000447 DATAAS010000000
VERSION     DATAAS010000447.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5867
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1052406"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(488..670)
                     /locus_tag="VHF08_07125"
     CDS             complement(488..670)
                     /locus_tag="VHF08_07125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068460.1"
                     /translation="MYVVKRLGKNGTWNTITLIDKNGSFRGEARFESEKEALKYLEVY
                     KKRMKSHQELKVFSEP"
     gene            complement(899..1291)
                     /locus_tag="VHF08_07130"
     CDS             complement(899..1291)
                     /locus_tag="VHF08_07130"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2068461.1"
                     /translation="MGIDRQQRQIRKVMIVEDEHDILLLYKDYLKSKGYSVIASSTTA
                     DEAFTDFEKYKPDLVIIDYKLPGIKNGLQAAKEILTKFPSARILIITAHKHIKNELNN
                     DDFFRNKRIEIIIKPLRLARLDYIIQEV"
     gene            complement(1445..2725)
                     /gene="prf1"
                     /locus_tag="VHF08_07135"
     CDS             complement(1445..2725)
                     /gene="prf1"
                     /locus_tag="VHF08_07135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor aRF-1"
                     /protein_id="HEX2068462.1"
                     /translation="MNSNVNQSKWDSVKRYKLTKMLNELSNISGHGTELVTVYIPPRR
                     PIFDIISQLRNEAGTASNIKSDLTRTHVQDALSKTIEHLKLFKEPPENGLVIFCGAIP
                     TGKGLGTEKIELYSVIPPKPIQINLYRCDDHFWIDHLKDMMKDDKVIGILALDTQEAG
                     LGILTGDRWEVIDTLTSGVAGKHRQGGQSARRFERLRDNELNEFYHRVADHAQKVFVD
                     QFKVRGIIVGGPGPTKDNFLREEYLDYRLQNNVISTLDSSYSGDEGVREIIDKINEQG
                     VMTEYRLMEEKKILKKFMSEVYSGKGLGIYGIFDVIKALKNGIADLVIVTDDIGYLKL
                     DVKCKRCGNIQEHFIERLRLISARQDILSKPCPSCGAVDFESSEKDIVDYLEEMTIMT
                     GSKLEIISGRTEEGAQLASLGKIGSLLRFRPTSV"
     gene            2956..3510
                     /locus_tag="VHF08_07140"
     CDS             2956..3510
                     /locus_tag="VHF08_07140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX2068463.1"
                     /translation="MLPKLEYIKQARIRLSITQRKLALLAGISTSMINQIESGRCKPS
                     YETARKIFEILSSLEGQSSMKAGDICSRKLISVQKHETLHAAINKMRSNSISQIPVFD
                     GSRVVGILSEDALAKSMVEKDEKKLRNIMIMIIMEPPPPVVDVSTPAKALVPLVRFAK
                     CVLVSEKGDVIGIITVTDTLKMVE"
     gene            complement(3768..5165)
                     /gene="cysS"
                     /locus_tag="VHF08_07145"
     CDS             complement(3768..5165)
                     /gene="cysS"
                     /locus_tag="VHF08_07145"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR00435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEX2068464.1"
                     /translation="MRLYNTLTRMIDEINTQHQIIRIYLCGVTVYDDSHIGHARTIIV
                     FDVLRRYLEFKGYTVNFIQNFTDVDDKIINRAKREGLTAKEIAAKYIKDYFIDFSRLN
                     VLPANQFPRATEHIKEMINLIQGLINKNYAYITPNGVYFRVRSFSRYGRLSKKTIEEL
                     ESGSRIEIDQSKENPLDFALWKFYSEEPAWDSPWGRGRPGWHIECSAMALKYFESPFE
                     IHGGGNDLIFPHHENEIAQSEAFSETLFAKLWLHTGMVTINSEKMSKSLGNIITVREA
                     LNRWGANSLRIFCISVQYSKPLDFSDKILLDSMQRWRQIETCAYELRFANGCGGQIKE
                     IELLTHESIKEFTAALEDDLNTSLALTIFMKFVADINRYAANDNLTFDMSRIAIVTFN
                     HCMEILGLKVLEPTDTEKKEIEDLVVIRNKFRTEKKFEDSDIIRRQLIDRYGVELMDH
                     KNRTLWKKVETPLIV"
     gene            complement(5230..5559)
                     /locus_tag="VHF08_07150"
     CDS             complement(5230..5559)
                     /locus_tag="VHF08_07150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEX2068465.1"
                     /translation="MIKYRRILMTWVKVCYERDIKENHGKEINVNGIRIALFHANGRY
                     YAIEALCRHQDGSLAPGKIDGEVVECPLHSWHYNIKTGELLDYLEGVKLTTYKTNVKD
                     NEIFIDI"
BASE COUNT         1868 a         1084 c          891 g         2024 t
ORIGIN      
        1 attgagtata ttgaactgag aagagggaaa taacgagtac aatgtagtac tgaccgatat
       61 atgtagacca gcaaactttc tctagttata cattaattaa aatgaagatc tcaactacta
      121 tgaatcatag atcaaaagaa ataatgaacc gtagagtggt aataaagagt ccgtaggcta
      181 ctgtgaatat aatcaaacta ttatcgtata ttcattattt taagtaatcc aaagaagtat
      241 acatcacagc gctatttggt cgattatctg ccactcgcaa aatgctttaa ctactgataa
      301 ctatgaggcc atgtcttgat tagtacacaa aagtagtgct cgagtcatct cttattacat
      361 gatgtaataa ggtttgtccc catcaataga gcgcaagttg aaaactaatc acagctcggt
      421 tagaaaaact ggatcaaaaa agattgaaaa gcatatgcat aatgttttgt taaattatat
      481 actgtctcta tggctccgaa aatactttga gctcttgatg acttttcatc cttttcttat
      541 atacctcaag atatttaagc gcctctttct cagattcaaa tcgtgcttct cctctaaatg
      601 atccattttt atcaattagg gtgatggtgt tccaagttcc attttttcca agtctcttca
      661 caacatacat cttcatctct attaatagaa ttgcaataat aaaagataga tctcatttga
      721 acagcacaca ttgaaataac tgacaacaag tatttaggtt tcttctaaag tttgaagtat
      781 tgcataggaa tatacttcga tcgatacatg tagctggatg ttaattcctt cattggcatt
      841 atacatggtg atcggctgga tcctttacaa atatatgttc tactaaattg atttctagtt
      901 acacttcttg aataatataa tctagtctag cgagtctaag aggttttatt attatttcga
      961 tccttttatt tcggaaaaag tcatcattat tcaattcatt ttttatatgt ttatgagctg
     1021 ttattatcaa tatccgagca gatgggaatt tggttaagat ctcttttgca gcttgaagcc
     1081 cattttttat ccccggaagt ttatagtcaa ttattactag atctggtttg tatttttcaa
     1141 aatctgtaaa agcttcatcg gccgttgttg agctcgcaat tacagaatat cctttacttt
     1201 taagataatc cttgtataat aaaagtatat cgtgttcatc ctccactatc ataactttac
     1261 gaatttgtct ttgttgccga tctatgccca tataggttat aatggaaata attcctaaaa
     1321 aagatattac acactataaa ttaattttaa aagtcgacta tcgaccatat accggtttta
     1381 tatgaaatgt gtgattcgct ggaaaggatt tgcagctagt aataactatg aactttataa
     1441 tctttcatac agatgtcggc ctaaatcgta ggagcgagcc gatttttcct aagctggcca
     1501 actgtgcacc ttcctcagtc ctacctgata taatttctag cttactacct gtcatgatag
     1561 tcatttcctc taagtaatcg acaatatctt tttcactact ttcaaagtca actgctccac
     1621 aagaaggaca aggttttgat aatatatcct gccttgctga aatcaatctt agcctctcta
     1681 taaaatgctc ttgaatgtta ccacatcttt tacattttac atccaatttc aaatacccga
     1741 tatcatcagt aactattacg aggtcagcaa taccattttt caatgctttt atcacatcga
     1801 agatcccata tatccctaaa cccttccctg agtatacctc actcatgaat ttttttaata
     1861 tttttttttc ttccattagg cgatattctg tcattactcc ttgttcattt attttgtcaa
     1921 tgatttccct tactccttcg tctccagaat atgaggaatc tagtgtagaa ataacattat
     1981 tctgcaatct ataatcaaga tattcctctc taagaaaatt atcctttgtc ggaccaggac
     2041 cgcctacgat gattcctctt actttgaatt ggtcgacaaa gactttttga gcatggtctg
     2101 caactctatg ataaaattca tttaattcgt tatcgcgaag ccgctcaaat ctcctagcag
     2161 attgtcctcc ttgtctatgt tttcccgcga caccagaagt tagagtatct atgacttccc
     2221 atctatctcc agttagaatc ccaagaccag cctcctgagt atctaaagcc aatattccta
     2281 ttaccttatc atctttcatc atatctttta gatgatctat ccaaaaatga tcatcacatc
     2341 gataaagatt aatttgaatg ggtttaggtg gaataacaga atagagttca attttttctg
     2401 tacccaaacc tttgccagtt ggaatagctc cacagaaaat gacaagacca ttctcaggag
     2461 gttccttaaa gagtttaaga tgttctatgg ttttacttaa cgcatcttgg acatgcgtcc
     2521 tagtcaagtc agactttatg ttggatgcag ttcctgcctc atttcgtaat tgggatataa
     2581 tatcaaaaat cgggcgtcgt ggtggaatat atacagtcac taactctgtt ccatgacctg
     2641 atatattcga aagttcatta agcattttag tcaatttgta tcttttaaca gagtcccatt
     2701 tggactgatt aacatttgaa ttcattgcga ctaataacaa cggaattgat ttgtaaagta
     2761 tataaggcta tcaaatattc atgatcaaaa acatccttac aatgactcta tttccaaagc
     2821 cattagcaga cttgaatatt ccatgaaatt agaagacatc tttgtaaatt attatcttca
     2881 tttaagagaa tgtacaacaa aagtaactga tgcgaaatta taaatcggta taaaaagaaa
     2941 ataaatctat ctgcaatgct tccgaagctt gagtatatta aacaggcgag aattagatta
     3001 agtatcacac agcgcaaatt agcattactt gcaggaatca gcacgtccat gattaatcaa
     3061 attgaatcag gcagatgtaa accaagttat gagactgcta gaaagatatt tgagattttg
     3121 agttctctag aaggtcaatc atcaatgaag gctggcgata tatgtagtcg caaattgatt
     3181 tctgtacaaa agcacgaaac tcttcatgct gcaattaata aaatgagaag taattcgata
     3241 agccaaatac ctgtatttga tggttctcga gtcgtaggaa tattgagtga ggatgctctt
     3301 gcaaaaagca tggtagaaaa agatgaaaag aagctaagaa atatcatgat catgataata
     3361 atggagccac caccaccagt tgttgacgtg tcaacacccg caaaggctct tgttccctta
     3421 gtgagatttg ctaaatgcgt tttagtcagc gaaaaaggag atgtaatagg gataataact
     3481 gtaactgaca ctttaaaaat ggtagaataa attcattcac ttattttttc cagaccaata
     3541 caacagtctg cagattttat acattcacca cagatattaa gttcactatt ttctggcaga
     3601 gcgcattcgc ataatgcaca tttcttattc tgctcaattt tttccatcta gtttttcact
     3661 tatcaatatg attatataaa tgaaagacaa tatttgaatt cttcccctaa ttatagatcc
     3721 cccttattct tatctgccca tcactatatg attaccagag atatctttta tacgattaaa
     3781 ggtgtttcaa ccttcttcca tagtgttctg tttttgtgat ccataagttc aacaccatac
     3841 ctatcaatca attgtctcct aataatatca gaatcttcaa attttttttc agttctaaat
     3901 ttatttctga ttacaacaag atcttcaatt tctttttttt cagtatctgt aggttctaat
     3961 actttaagac ctagtatttc catacaatgg ttaaaagtta ctatagctat acgagacata
     4021 tcaaatgtaa gattatcatt tgctgcatag cgattaatat ctgcaacaaa tttcataaat
     4081 attgtaagag caagcgatgt attcaaatca tcttccaatg cagctgtaaa ttctttaatg
     4141 gactcgtgag ttaacaattc tatttctttg atctgtcctc cacatccgtt cgcaaatcgt
     4201 aattcatatg cacaggtttc tatctggcgc catctctgca tggagtctaa aagaatttta
     4261 tctgagaaat caagaggttt agaatattga acagaaatac aaaaaatccg gagagaattt
     4321 gctccccacc gattaagagc ttctcggaca gttatgatat tgccaagaga tttcgacatt
     4381 ttttcagaat taatagtaac catgccagta tgtaaccata atttggcgaa gagagtttca
     4441 gaaaaggcct ctgactgagc aatttcattt tcatgatgtg gaaatataag atcgtttccg
     4501 cctccgtgta tctcaaaagg actttcaaaa tatttcaaag ccattgcaga acattcaata
     4561 tgccagccag gcctacctct tccccacgga ctatcccatg ctggttcctc tgaataaaat
     4621 ttccataaag caaaatcaag aggattctcc ttagactgat ctatttctat tcttgatcct
     4681 gattctaatt cttcaatagt ttttttagat aatctgccat acctcgaaaa ggacctgacc
     4741 cgaaaataga caccgttagg tgtgatatac gcataattct tgttgataag cccttgaatc
     4801 aaatttatca tttcttttat gtgctcagta gcacgtggga attgatttgc aggcagtacg
     4861 tttagacgag agaaatcaat aaaataatct ttaatatatt ttgctgctat ctcttttgca
     4921 gtcaatcctt ctcttttagc acgattaatt atcttatcgt ctacatcagt aaaattctga
     4981 ataaagttta cagtatatcc tttaaactca agatatcggc gtaaaacatc aaaaacaatt
     5041 attgttcttg catgacctat atgagagtca tcgtacaccg tcactccaca caggtaaatc
     5101 ctaataattt ggtgttgtgt gttaatctcg tcgatcattc ttgtaagtgt attgtataat
     5161 ctcaaattac aagacctcta ttaatgaatg ctttttaatc tgatttatca aagttttctc
     5221 attaaatatt taaatgtcta taaaaatctc attatctttt acatttgttt tatatgttgt
     5281 tagttttacc ccttctaaat agtccaataa ttcaccagtt ttgatattat agtgccatga
     5341 atgtaatgga cattcaacta cttcgccgtc gatttttcct ggagccaaag acccgtcctg
     5401 atgacggcaa agcgcttcta tagcataata tctaccattt gcgtggaata gggcaattct
     5461 tattccgttt acgtttatct cttttccatg gttctccttg atatctctct catagcatac
     5521 tttgacccat gtcattagga ttcttctata tttgatcatt tacggctata aaatcttatc
     5581 aagaatttaa ttaagcaatg aaatattttg cattttattt ttgttcagta gagcacgtcg
     5641 tctcatgaag tcacctttaa tggtttagaa aagaaataca ttaacaattg cctcaaggga
     5701 tctatattat agacgtcaat gatgttattg attctaaaac ataagtatgc aagcaacatt
     5761 tgttatatga acgaataaca taaaccttag ttagaaggca tatataataa tatatctata
     5821 ttaatagatt gattgacgtg attaaacatt aaaatgttat atttttt
//
LOCUS       DATAAS010000448         1791 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2121464, whole genome shotgun sequence.
ACCESSION   DATAAS010000448 DATAAS010000000
VERSION     DATAAS010000448.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1791
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2121464"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(106..672)
                     /locus_tag="VHF08_07155"
     CDS             complement(106..672)
                     /locus_tag="VHF08_07155"
                     /inference="COORDINATES: protein motif:HMM:NF013209.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX2068466.1"
                     /translation="MTGETQLRARLTRIKILRAIAERNGSAGFSEIRNATGLSTGSIY
                     YHLERMEDYVTKDSKQYKITEEGLELLREIDKKSVVYPTYNKEEETSTSLGVQTDETV
                     RQPRPLSQLIRDHSIPSLIIISLVFVSVGLYLNINIIFPNIFIENKIVTNSALISTFS
                     TSILVVVSFSIILKRQMLTSGYTRMMSL"
     gene            801..941
                     /locus_tag="VHF08_07160"
     tRNA            join(801..838,872..892,924..941)
                     /locus_tag="VHF08_07160"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:835..837,aa:Trp,seq:cca)
     gene            complement(1167..1469)
                     /locus_tag="VHF08_07165"
     CDS             complement(1167..1469)
                     /locus_tag="VHF08_07165"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068467.1"
                     /translation="MTESNNNDPYSVLFAQFASKLESHLLKYGVACADADMIIEESSI
                     LYFRKLNSSKKKLFKLLKRQDPETIFIDSACQVIGRLIPEAKQNFGSYNEISKCIH"
BASE COUNT          555 a          331 c          294 g          611 t
ORIGIN      
        1 gcaacaacta cttcggcata gacatacggt aaatgcgcgg gagtctattt acattatatg
       61 ctattgaaag actatgaaat acctactatt gaatggacat tactattaga gagacatcat
      121 tcgagtatat ccagaagtaa gcatctgcct cttcaagata attgaaaatg atacaaccac
      181 aagtatagat gttgaaaatg tagatattaa agctgagttt gtcactatct tattctctat
      241 aaatatattt ggaaaaatta tattaatatt aagatataaa cccactgaca caaaaaccaa
      301 ggaaattatg atcaaggatg gaattgaatg atctcttata agttgactca atggtcgtgg
      361 ttgtctgact gtttcgtctg tttgaactcc aagagaggtt gatgtctcct cctctttatt
      421 gtatgttggg tacacaactg acttcttgtc gatttcgcgt aatagctcca atccttcttc
      481 agtaattttg tattgcttgg agtccttggt aacataatcc tccatgcgct ccaaatgata
      541 atagattgaa ccagtggaaa gtcctgtagc atttctgatc tcagagaatc ccgctgaacc
      601 gtttctctct gcaattgccc tcaatatttt gatccttgtt aacctggctc gcagctgagt
      661 ctctcctgtc aatggcgttc atatatcata aaattattta tttctttcta actatgtctg
      721 acgaattcga taggtatgat tattctcccc agcaagactt atacagacta catacaatta
      781 cctctaacgc gttgccaggt ggggtcgtag cgaagccagg catcgcaacg ggctccagat
      841 ctaaagatta aggctagtaa ttagaaaaga cacccgtggg tcaagggttc aaatggtttg
      901 ggtcaaaatc cttatcagaa tagatccctt cggccccacc atttcatcct atttcaatat
      961 ctcaatgcgg cctctcttgg gatttgagat acagtcctaa gagtgttgat agcagtaact
     1021 tttaacattc atactatcta ttgtattatt cgaagttcat gcttcgacgg atttcaaaat
     1081 aatttagttt tagataaaga cgacgtttta attatactaa attcactttt ataataatga
     1141 tgtacccttt aactcaatag attcatttag tgtatacact ttgatatctc attgtaagaa
     1201 ccaaaattct gttttgcttc cgggataagc cttcctataa cttgacaggc agaatcaatg
     1261 aatattgttt caggatcctg tcttttcaat agtttgaaaa gttttttttt ggaagaattt
     1321 aattttctaa aataaagaat agagctctct tcaattatca tatctgcatc agcacatgcc
     1381 accccgtatt ttaataaatg tgactctaat tttgaggcaa actgagcaaa aagaaccgag
     1441 tatggatcat tattattaga ttccgtcatc taattgacac cttattctcg ttatctatat
     1501 agatctacat gttttttaat tttgcagaat cttgacagat ttagacgatc ggatcaattt
     1561 ttgctcataa ttgaatgaat atgaattata gaaccttttc tttctaaacc gaatgtctgt
     1621 ccttataaaa atagagtgat ggccgatatt actataacat gattgtttcc cttagttttg
     1681 aatgctttta acaaagttgt catctgaact attaccatac tatgatcaat tagtatcttc
     1741 taattatgct caaagactga gagagattat ccacatacac aaaatcttct a
//
LOCUS       DATAAS010000449         3746 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4831526, whole genome shotgun sequence.
ACCESSION   DATAAS010000449 DATAAS010000000
VERSION     DATAAS010000449.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3746)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3746)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3746
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4831526"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(475..930)
                     /locus_tag="VHF08_07170"
     CDS             complement(475..930)
                     /locus_tag="VHF08_07170"
                     /inference="COORDINATES: protein motif:HMM:NF014665.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0016653 - oxidoreductase activity, acting
                     on NAD(P)H, heme protein as acceptor [Evidence IEA];
                     GO_process: GO:0006784 - heme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HEX2068468.1"
                     /translation="MGHQQIVPQTMLWLSFASLVLLYGVMLIGVYISASNLGLSCTEW
                     PLCPNGFDFPSPKYFFEHYHRVLVIITGIFIYATTAYAIKKARNTQKYAIVSSIIISF
                     QILLGMLVVNTKLQPLLVAVHLSTGVLLFAMILMTFLSAYKIKEKKFPI"
     gene            complement(1157..1585)
                     /locus_tag="VHF08_07175"
     CDS             complement(1157..1585)
                     /locus_tag="VHF08_07175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068469.1"
                     /translation="MTSHEGPTILWNMLKGKKVKSNDGKDVGEIKEISLNFLRLEKGT
                     ISKDKFWIPKYIADAFDGKTLWLLVSEEELLGKYLYGSEPSADQYSKDFEAFKTTSYG
                     QKITYLSDMDQNVRVIEEKTAGVETKAEEGTDYKNIRDLE"
     gene            complement(1763..2188)
                     /locus_tag="VHF08_07180"
     CDS             complement(1763..2188)
                     /locus_tag="VHF08_07180"
                     /inference="COORDINATES: protein motif:HMM:NF013987.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068470.1"
                     /translation="MQTSSPPSYFYSWSKFGREAEFVVTLYLKLRGWNIHLSRGSRGP
                     ADIIAIRDFTKWMIQVKSSTKIARLKGYEVKRLQEMAQRDGGQAVIATLQPIETAVIR
                     SMTEEQNALGLYAKDPAVLQFGNYAMSFYSLIDWKRLKP"
     gene            complement(2764..3552)
                     /locus_tag="VHF08_07185"
     CDS             complement(2764..3552)
                     /locus_tag="VHF08_07185"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068471.1"
                     /translation="MPVSRMKLCCIINNTIRREAAKSIVLGLGFIVILSIIYHDNKSP
                     VFAQNLADNNHNFNFLANTTFINNNKTTTDPANITTLISDDFNIEGTINSQVSAKPKE
                     VGTSKNNLATSATNIPSQTYLLDGRWRLDVSGGNVTYFKSNITMITITGMEIHDHLIV
                     FKPSTSEMGLLTNNTLSAQNISITIAANNNSISQNAYNSIIFSGAADIISNGVMQWRD
                     VPISVSILNDKVISIALDSNRIDDHFFGAPIYGLVGSIEPLVSP"
BASE COUNT         1246 a          604 c          578 g         1318 t
ORIGIN      
        1 ggcgattcta tagatgttta atccataagt ctacacgcga tgatatgatc aatttattgc
       61 tattttcatt attgtctcta ttggaacctt tttattcctt agtgaaactt ccaaaggcag
      121 tgtatttagc catatttttg cttaagagcc acataacata atactaataa gcaataaaga
      181 cgatacggaa ataatgctat gtagagcctg tggaggagag atgattgcat ttaagtattg
      241 ctcggattgc aatgaagtta ttcagtccag atgtgatagc tgtaagaagg aagatgaaac
      301 gtcaatgcat aatcatcatc tataagaatc ttagtagttt cactttgcct aatgctacca
      361 ttagcttacg ttatggcaag atctttccac tgttttctat aatttaaaat tacaattgac
      421 aaacagaaaa atatctcact ttaacaagtc ttgtatctga aagattttgc agttctatat
      481 tggaaatttt ttttccttta ttttataagc tgacagaaaa gtcattaata tcattgcaaa
      541 caataaaact cccgttgata aatgcactgc cacaagcaaa ggttgcaatt ttgtattgac
      601 cactagcata cccaataaaa tttgaaatga aatgatgatg cttgatacaa tggcatactt
      661 ttgtgtgttt ctagcctttt taatagcata tgccgtagta gcatatatga aaattcctgt
      721 aattatgact aaaactctat gataatgttc aaagaaatat tttggagaag gaaaatcaaa
      781 tccattagga cacagaggcc attcagtaca agataaacct aggttagaag cactaatgta
      841 tactcctatt aacataacac catacaggag gacgagtgaa gcaaaagata accacaacat
      901 tgtctgagga acgatttgtt gatggcccat ggaagagata ttttcatagt caattattaa
      961 tcttgactaa caaatttaac tctggcaggt gatgaaaggt atttcagatg aaaaaattat
     1021 gatgttcctg atatgtgata atgtatcttc atgggaccat agacagaata agtgagatat
     1081 acatcattag aagtttttta tatttataga aaatagtttt ttattatcct ttactattaa
     1141 gatatttcaa atatctttat tccaaatctc gaatgttttt ataatctgtt ccttcttcag
     1201 ctttagtctc aacaccagca gttttttctt caattactct cacattttga tccatgtctg
     1261 aaagatacgt tattttttgt ccatatgatg ttgtcttaaa tgcttcaaag tcttttgaat
     1321 attgatctgc tgatggttca cttccataaa ggtatttacc aagaagttcc tcttcactta
     1381 ctaaaagcca taatgtcttt ccatcaaaag catcagcaat atactttgga atccaaaatt
     1441 tgtctttact tattgtaccc ttttctaacc gtaagaaatt caaagatatt tctttgattt
     1501 caccgacatc ctttccatca ttgcttttta ctttcttccc cttaagcata ttccataata
     1561 tcgtgggtcc ttcatgtgat gtcatcgtaa attatttgca gaagtatgtc ctataacgat
     1621 tagcgaaaat tgttctatat aaacatcaat tcaggttagc agtagggaaa aagttctaga
     1681 aatgcaagac ctcatagatg cacataacag gtagagacag aagaacaatt gattacagaa
     1741 aatattgaaa gatagggaag tgttaaggtt ttagtctttt ccaatctata agtgaataaa
     1801 aagacatggc ataatttcca aattgcaata ctgctgggtc ttttgcatat aatcctagcg
     1861 cattttgttc ttctgtcatc gatcttataa ccgcagtttc aatcggctgc aaagtagcaa
     1921 ttacagcttg tcctccatct ctttgtgcca tttcctgaag tcgttttacc tcatagcctt
     1981 tcaacctcgc tatcttggtg cttgatttta cttggatcat ccattttgta aaatcacgaa
     2041 tagcgataat gtctgctggt cctctactac ctcttgaaag gtgtatgttc catcctctta
     2101 atttaagata gagagtaaca acaaattcag cttctcttcc aaatttactc caagaataga
     2161 aataagatgg tggggatgat gtctgcaaat aggatcttct catgtataat actaagcttt
     2221 aatacttcct ctcaataatt atttacaaga agatcaataa atatagaaaa gaaacagcca
     2281 ataactgtaa atgtaactta taatatggct tacaaaggac cgaaattgga ttaaatattt
     2341 tggagcataa tactaataat attccaagaa cttgtaaaag gtggatttta ggattttagt
     2401 atatatgtct ataagtcgac tatcgattaa gaagaaatgc catgctctta tctgatccat
     2461 atttctctat cttagatgaa aagctctaaa aatgggatac actatttatg ttgaaaattg
     2521 attatattaa gatgataatt agcagtatat aaaaatatat tattaatatg ttaaaaatta
     2581 atggatacca ttcaaagatt tgtgaatttt tatcttctgc gttaaaatta ttatctaaat
     2641 taagttatgt taactaccat gttgttctat atttctatat attgttttat ttattgaatg
     2701 tgcatcaaga tactctaatg gcattattat atctctagga agactaaatc atcgactatt
     2761 tctctaaggt gatacaagtg gttcaattga acctactaga ccatagatcg gagcaccaaa
     2821 gaaatgatca tcgattctat ttgaatccaa tgcaatactg ataaccttat catttaatat
     2881 agagacagat attggtacat ctctccattg cattactcca tttgatatta tgtcagctgc
     2941 acctgagaat attatactat tataagcatt ttgtgatata gaattattat tggctgctat
     3001 tgttatactt atattctgtg ccgatagagt attattagtt agtaatccca tctctgaagt
     3061 agaaggcttg aaaacaatta gatgatcatg gatctccata cctgtaattg ttatcattgt
     3121 tatatttgac ttgaaatatg tcacgtttcc cccagacaca tcaagtctcc atctaccatc
     3181 taaaaggtat gtctgcgatg gtatattagt ggctgatgta gccaaattgt tcttacttgt
     3241 tcctacttct ttcggttttg cactaacctg actatttatc gttccttcta tattaaagtc
     3301 atcgctgata agagtagtga tattagcggg gtctgtcgta gttttattat tatttataaa
     3361 agtcgtgtta gccagaaaat taaagttatg attattatca gcaagatttt gtgcaaatac
     3421 tggcgattta ttatcatgat aaattattga cagtattacg ataaatccca aaccaagtac
     3481 tattgatttc gcagcttctc ttcttattgt gttgtttatt atgcagcata atttcatccg
     3541 tgaaactggc attgtgttaa tagaacttaa acattcttga agaccaacaa taattgatgt
     3601 taaataacaa acatgcaaca actaatcgga taattattat aacaacaaaa taatgaaaac
     3661 caatgtctac ggattattat atattgataa aagatacttg tgaattatct aatgctgtat
     3721 aaaatgtaga caagtattta tctatc
//
LOCUS       DATAAS010000450         2059 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2669361, whole genome shotgun sequence.
ACCESSION   DATAAS010000450 DATAAS010000000
VERSION     DATAAS010000450.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2059)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2059)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2059
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2669361"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            578..829
                     /locus_tag="VHF08_07190"
     CDS             578..829
                     /locus_tag="VHF08_07190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068472.1"
                     /translation="MRSQPHHRPTQTFFPADREAIMSQFRVWPFPSATIMTCGERNRN
                     PGHHFAGINIISPIYLNNSYKRQKQKLLEHHGKDLRAVN"
     gene            1381..1650
                     /locus_tag="VHF08_07195"
     CDS             1381..1650
                     /locus_tag="VHF08_07195"
                     /inference="COORDINATES: protein motif:HMM:NF016050.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclophilin-like family protein"
                     /protein_id="HEX2068473.1"
                     /translation="MKKEIVVEFVESKRSISIELDNSQSSKTVKAILDNLPIKVNINR
                     WNDELYTDKTVIIAEEENAQSEVSLLDVAYWQKEMHFVYSMVLLQ"
BASE COUNT          682 a          326 c          324 g          727 t
ORIGIN      
        1 aagttctaca agtcatacag agaccgtgtt tccaaaccat ttactattca acagcccctt
       61 gggtcaacat gcctttgcag gtatctttag ggattcctgg tcgtaagtgt cagaaacacg
      121 tagattttct tataataatt ataagtatat tcatcatatc ctataatatt ttgcaaagtt
      181 ttaattgtga tatttgaact gtctccttga atcaactccg tctccctttt cttcttcatc
      241 tgccgcgctt gattcttcct cgctattact gtagtctctt cctcttcgct gccactctcc
      301 tcgttttctg attctaattt actttcactt cttcttcttt gtagactact tcaacatctt
      361 gttcctcttc ttctatttct tctcctggta gaggagggta tccgttgtgc tagcacttga
      421 aaattagaat tcctacaata aagaatagaa ggataaactt aacttaagtc ttcgaagatt
      481 cattaggtca aggtgaaaag atcattccat aaaaatggct attctatagg tcttttacct
      541 aagaaataat ttgtagcttt agaagataca cctcttcttg aggtctcaac cacatcatag
      601 gccaacacaa actttttttc ctgcagacag agaggctatt atgagccagt tccgtgtttg
      661 gcctttcccc tctgccacaa taatgacctg cggtgaacgg aacagaaacc cgggccatca
      721 ttttgcaggt ataaatataa tctcgcctat ttatttaaac aattcttaca aaagacaaaa
      781 gcaaaagtta cttgaacatc atggtaagga tctaagggca gttaactaag actaagactt
      841 ttgcttgatg aatatctgta atgaaatata ttattatcgt catggtaaat aataagagaa
      901 taacatagag aaatttatat tcttttcagt tgctcctact tcttattcat tatgattcct
      961 ttgcttttag cattctgaaa taaggcaaga gaactttatt tctttatcat gtctgtagca
     1021 tctgatgtag atgtaccatc attatttgat gtatactcat atcatactaa tcactaaagc
     1081 taaaatgtta aataataaaa tgattggcga taagattatt atatgagctg cttctgtatt
     1141 tatagaagta atttatgaaa taggtttgat ttttctctac ttcttgtatt gtttattgtc
     1201 atcgataatt ggccatgcat cttcaagcct attgaacttc atctaatatt aagatattat
     1261 attttaattt ctattgttat tatttctaaa agtgagcgtg attaaattag ctattgtgat
     1321 gactctttat gtttttttta tatgaaataa tatatgggct ctatcgacgt agaataaata
     1381 atgaaaaaag aaatagttgt agaatttgta gaatctaaaa gatcaatatc aatagaatta
     1441 gacaattccc aatcgtcaaa aaccgtaaaa gcaatacttg ataatctacc aataaaggta
     1501 aacattaaca gatggaatga tgagctttat acagataaga ctgttataat tgctgaagaa
     1561 gaaaatgctc agtctgaagt tagtctctta gatgttgcat attggcagaa ggaaatgcac
     1621 tttgtctatt ctatggtcct actccaataa gtaaaaaaca gaagataata aaataatact
     1681 tattctcctg tcaatatagt aggcaagatt gtctctaaag acaatatttt aaatcagatt
     1741 aaagacagca gtacagtaat tgtgaagtct aagtagagtt tctctcatcc tgattatgaa
     1801 atatgtatgt tttgctgttg gtagctatat tcttgttgtg tttgaatatt catatagtta
     1861 acagaatata taaatatcta tatatatagg cggacagatt tataataacc agaaataagg
     1921 gtgttataaa agcattaaac aataaaaatt tatgatatat tactatggga atgttatagt
     1981 atgaatagta aaagaacaat atatgttact atgcgaatgt tatagtatga ataaaagaac
     2041 aatcggagtg ctggtagtt
//
LOCUS       DATAAS010000451         4352 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_508628, whole genome shotgun sequence.
ACCESSION   DATAAS010000451 DATAAS010000000
VERSION     DATAAS010000451.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4352)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4352)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4352
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_508628"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(294..596)
                     /locus_tag="VHF08_07200"
     CDS             complement(294..596)
                     /locus_tag="VHF08_07200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068474.1"
                     /translation="MAEDTSSTSSNTIPFPTLTILYLPAEAESIIHEISQKYCNITVE
                     DCKGYFHGGVQKDYKKITIWSQGIDSLWFNAIIARVKELSNVEFVPIVSGGIMYSI"
     gene            1147..1476
                     /locus_tag="VHF08_07205"
     CDS             1147..1476
                     /locus_tag="VHF08_07205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068475.1"
                     /translation="MEESIIRYRVNQITDTGMNVTLALVEDVELETVSQQQLILDAID
                     STVTDKEVKQQIKPILEAILRAQPQTVIKSYSQTVIQITMPKRRYENVGSPRVGEHLL
                     IDIKKAN"
     gene            1726..1995
                     /locus_tag="VHF08_07210"
     CDS             1726..1995
                     /locus_tag="VHF08_07210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HEX2068476.1"
                     /translation="MPTAYVLINCDLGSEEEILKELKKLPEVVEVSGVYGVYDIILKI
                     TSDTMDKLRETITWHVRRIDKVRSTLTMIVIEGQGDKEKKRQQQQ"
     gene            complement(2005..3210)
                     /locus_tag="VHF08_07215"
     CDS             complement(2005..3210)
                     /locus_tag="VHF08_07215"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEX2068477.1"
                     /translation="MDAGYNGFHGDNSIELDLIRRDFPLMRKKVYMNNGAIAPTPIST
                     IKSITDFLLKCSEDGPDSKMIYDYIVSLMKELRTRITHMINCDPNEIVFTQSTTEGIN
                     YVCNGLDWKRTDSIIVRGGPHEHYANYLPWLQLSKRKGVKINELEINENGYFDFTNLE
                     KLAKKKNTKLITLSHALYNSGAIMPVEETGKIARENNILYCIDAAQTVGSIEVDVKKI
                     GCDFMAFPGFKWLCGPVGIGIFYCSKNAGELLIPQSIGGESAILSDQKVIAYVESPQR
                     FQTGFRNYPGVAGLESSLRYILRLGIANIRKKNIKIANILRSELIKIKGIKIYGPEDE
                     KERTSIIPFSSSNLDAKTLVDRLEQNEIIFAERDIGGRKKVVRASPHFFNSEEDVVRA
                     VSYIKNILK"
     gene            3227..3892
                     /locus_tag="VHF08_07220"
     CDS             3227..3892
                     /locus_tag="VHF08_07220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068478.1"
                     /translation="MDTSYNNIFSTKGLNSLTYNDPYAKLCFTSMIASQCQKKVIYID
                     LDTMFAAYAKSDLILLLRNTKCINKTINIYLPTEDRFESILKEIIEDMYDSSIVIFDS
                     VNSFYNMYYKKIDINSGKGLSNINHLLSIFLMLLLKHGIYLNVPILATSMIRYKKYTE
                     WVQTPTSRRLLHKKSIVKLNVVMINEDDLSLEIISHPTRTSEKIIFQNLGVKFGSGID
                     NNA"
BASE COUNT         1515 a          717 c          660 g         1460 t
ORIGIN      
        1 cactaattca aaatgcgctc tttgtggtaa taaccttaat ttcagatata aagcaatgcc
       61 tcaatggaac atttctggtg atctctgtgg agaatgctat ggaaaaaaat tgaccgagca
      121 ttacatttcg actgatcgat aagtattata acattataac attatatctt ctttttagat
      181 gttgttctcc agtcaagagc atcctatata acaaatattc ttcatggtat aggagcttta
      241 tattagaaga tcagcccata gttagcttct tgtctctgta aaaaattgta gccttagatg
      301 gaatacataa ttcctccaga cactattggc acaaattcta cgttgctaag ttccttaacc
      361 cgggcgataa tcgcattaaa ccacaagcta tctattccct ggctccagat agttatcttc
      421 ttatagtctt tttggactcc accatgaaaa tatcctttac aatcctctac tgtaatgtta
      481 caatatttct gacttatttc atggattata ctttccgctt ctgctggtaa atataaaatg
      541 gtgagggttg gaaaaggaat agtattgcta gatgttgagg aggtatcttc tgccattatc
      601 tctgctcaaa tttattatta cgggcgctaa tatctggatt tcgtgttaag ttttttatta
      661 tgaattttgt aaacctttag tatgatatct ataaataaat aaaatgaata tatttttaga
      721 tcttatagta tgaatattcc aaatattcta aaaaatttat atagatttag ctatcactaa
      781 atatcgctag atattagatc aagtataaca aaagtatacg aagatactga ccttatattt
      841 ataacattac aagttcactt gtattgatta cacagaaaga cttgtcgtca gacgtaaaaa
      901 gcagaaaata ttttatagta ttgctatata gcatcatagc atcatatagt ttcataatgt
      961 ttgcatcttc taaaatagaa gaacttgttt ataatttgaa aaagatttgc aataattatt
     1021 gtaaaccttt ataaagttag cataatgaaa atttgactca ataaccttat gtagtcatag
     1081 gtataaggca gattctagag tgaataaacg taaacattat aaatattaaa attataaata
     1141 tttgatttgg aagaatcaat aattcgttat agagttaacc aaataacaga cactgggatg
     1201 aatgtcactc ttgctcttgt tgaagatgtt gagctagaaa ccgtttcaca acaacaatta
     1261 atattagatg ctattgattc gacagtaact gataaagaag ttaaacaaca gattaaacca
     1321 attttagaag ctattctcag agctcaacct cagacagtta tcaaatcata ctcccagacg
     1381 gttattcaaa ttacaatgcc gaagaggcgt tatgaaaatg tagggtctcc gcgtgtcggt
     1441 gaacacttat taatagatat taaaaaagca aattaaccat tgtaaaatac tgctaacaat
     1501 aacaatgcaa aatgtatcaa atgaagagtt tgacaataat tcagaagcat tacaatcatt
     1561 atttggttgt ttctaagtac agtgaacaac agcaacagta aatagagaca tcactggttt
     1621 aagagaacat actagaaatc taaaccaatc attttcttgt ttttgttcaa tcatctataa
     1681 acgaaaaaat agtttaatac tcgcaaagaa catatactgt ttatcatgcc tacagcatat
     1741 gtcctaataa actgtgacct tggttctgag gaggagattt taaaagaact gaaaaaatta
     1801 cctgaagtcg ttgaagtaag tggagtgtac ggtgtttatg acatcattct taagattaca
     1861 tcagatacaa tggataaact gagggaaact atcacttggc atgtaagaag aattgataaa
     1921 gttagatcga ctcttaccat gattgtaatc gaaggccaag gagataaaga gaagaagcga
     1981 caacaacagc aataataatt ataatcattt caaaatattt ttaatataac tcactgccct
     2041 tacaacatct tcctcgctat taaaaaagtg tggtgacgct ctaactacct tttttctacc
     2101 tccaatatcc ctttcagcaa atattatttc attttgttct agtctgtcta cgagagtttt
     2161 agcatctaaa ttagaagagg aaaagggaat tatagatgtt ctctcctttt catcttctgg
     2221 tccataaatt ttaataccct tgatctttat aagttcactt cttaatatat ttgcgatctt
     2281 tatattcttc ttacgaatat ttgctatgcc taaacgtaaa atatatcgta gtgaagattc
     2341 caatcctgca acaccaggat aattgcgaaa tccagtctga aatctttggg gagattcaac
     2401 gtaggcaata actttttgat ctgataatat tgctgattct ccaccaatag attgaggaat
     2461 tagaagttca ccagcatttt tactacaata aaatattcca ataccaacag gtccacaaag
     2521 ccatttaaat cccggaaatg ccataaagtc gcaaccaatt ttctttacat caacttcaat
     2581 tgagcccact gtttgggcag catcgatgca atataagata ttattttcac gtgcaatttt
     2641 tccagtctcc tcaaccggca ttattgcacc agaattatat agtgcatggc tcaatgtaat
     2701 tagtttcgta tttttcttct ttgccaactt ctccagattt gtaaaatcaa aatatccatt
     2761 ttcattgatc tccaattcgt ttatttttac accttttctt tttgataatt gcagccatgg
     2821 caggtaatta gcataatgtt cgtgaggtcc acctctaacg ataatagaat cagttctttt
     2881 ccagtcgaga ccattgcata cgtagttgat gccttctgtg gtgctttgag taaatacaat
     2941 ttcgttagga tcacaattta tcatatgagt aattctagta cgtagttctt tcattaacga
     3001 aacgatatag tcgtatatca ttttagaatc aggtccatcc tcagaacatt ttaaaagaaa
     3061 atcagtaatt gatttgattg tagagattgg agtaggagca atggctccat tattcatgta
     3121 aactttcttt ctcataagtg gaaagtctct tcgaatcaga tctaactcaa tactattatc
     3181 gccatgaaat ccattatatc ctgcatccat ctaaaccaat atagaagtgg atacatccta
     3241 taacaatatc tttagcacaa agggattgaa tagcctaaca tataatgatc cctatgcaaa
     3301 gctttgtttt acttctatga tagcatcaca gtgtcaaaaa aaagtaatat atattgatct
     3361 tgacacaatg tttgcggcat atgcgaagtc agacttgata ttattattga gaaatacaaa
     3421 atgtattaat aaaacaatta atatttatct tccaacagaa gatagattcg aatcgatttt
     3481 aaaagaaatc attgaagata tgtatgattc atcaattgtt attttcgatt ctgtcaacag
     3541 cttttataat atgtattaca aaaaaattga tatcaactca gggaaaggac ttagtaatat
     3601 aaatcatcta ctttcaattt ttcttatgtt attgttaaag catggaatat atctgaatgt
     3661 ccccattctc gcgacgagta tgattcgcta taaaaaatat acagaatggg ttcaaacccc
     3721 aactagcaga cgacttttac acaaaaaaag cattgtgaag ctaaatgtag taatgataaa
     3781 tgaagatgac ctttctctag agataatatc tcatcctaca cgaacttcag agaaaattat
     3841 ttttcaaaac cttggggtca agtttggttc aggcatagat aataatgctt aacagagacg
     3901 gttggatcta ttctcttatg ggttgatatt atcataattt tatgaatacc attaaatcta
     3961 caaccaaaac aagtaatacc agtactgtaa atacattggt aagtataact atacattata
     4021 atgataaaag aagtgataga aagtcaactt tctaatataa catattagca tacttgtctt
     4081 gatttaaaag attaattagg aaaacgagtt acctccaata attattttcc aagcaacatg
     4141 gtttgtaatt tgcttattat tgcaaagcat gtatatcttg tacttctttt tggcaaatag
     4201 gcttctgtaa cgatactagg tggttttaac tatcaacatt aactagcaaa cttctctaaa
     4261 atagcgccaa tgcactttgt cgtcttattt agcagatcaa ttcgtgcaaa ttcgtttgga
     4321 gaatgaattt ttgcatataa atatgtgcta cc
//
LOCUS       DATAAS010000452         4139 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_1061927, whole genome shotgun sequence.
ACCESSION   DATAAS010000452 DATAAS010000000
VERSION     DATAAS010000452.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4139)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4139)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4139
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1061927"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1525
                     /locus_tag="VHF08_07225"
     CDS             <1..1525
                     /locus_tag="VHF08_07225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="beta-CASP ribonuclease aCPSF1"
                     /protein_id="HEX2068479.1"
                     /translation="EDFDNIDLIEKTGWKVRIRKAPLIMDIIRNINEILHNTVNERIR
                     FYREVGEKIFRSKLNEIAEASLITLGGFGEVGRSCVLLTTHESEILLDCGVNGAAKNA
                     PHSFPRFDLTDLKMYEIDAVILSHAHLDHSGFLPALFKYGYHGPIYCSEPTLPLMYLL
                     QREYIKNKDYVSLFSLQDIDAVVMHTIPLSFGMVTDISPDIRLVLGNSGHIIGSALIH
                     LHIGNGDHNLVYTGDMKFSKTLSLENASWNFPRVETIIIESTHGGKEDIFLHRDEAEN
                     RLLNSINETISRKGKVLIPVSAAGLSQEIMLLINMYMKAGKITETKVLVEKIISEATS
                     IYEAYPEYLSKELNMEIMDNEDSPFESSHFETIESTTLECESAIILAPSSMLIGGPSI
                     EYLKQICNDPNSKMILTSYQVVDTLGRYIEDGNRQITIGDQSINIECQIEKIEGFSTH
                     SDYNQLISYINRLRPKLKRVLVNHGEKANVQNLASSINKMFKIQTQHPLVQEAIKLL"
     gene            complement(1769..2047)
                     /locus_tag="VHF08_07230"
     CDS             complement(1769..2047)
                     /locus_tag="VHF08_07230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HEX2068480.1"
                     /translation="MQTQKTPIYLKAITLRDMSDVASIKDDAKKQTILILRVTPLAQK
                     DVEGLRKAIDELYGYVQSIGGDIARLGEERVVLTPPGVKIWRGAYDLK"
     gene            complement(2138..3187)
                     /locus_tag="VHF08_07235"
     CDS             complement(2138..3187)
                     /locus_tag="VHF08_07235"
                     /inference="COORDINATES: protein motif:HMM:NF014610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068481.1"
                     /translation="MSSNTVENSSEVRKKKNAKAVALLSGGLDSNLAVRMMLEQGVEI
                     EAVAIKTPFCDFDCGKGCGHRVKEVASELGVHLKTVYYGEEYLKMLKHPKYGYGSGMN
                     PCIDCRGMMYKTAKEYMEKIGADFVVTGEVLFQRPMSQNKRALHIIEEDAEMKGKILR
                     PLSAKDLTPTGPEKDGLVDREKLYNIKGRSRKEQIALAKYFNISDPPNAAGGCLLTDP
                     SFSKRIRDLMEHTKNIPSINDVELLKIGRHFRLSMEAKLVVGRDEDENYIIDSMVMDS
                     DIKMEASECVGPRCILRSKEYDSKILNMAARIVLRYSDAPRENQSKVKVEINGYKEEI
                     SALPAKDTELEGLRI"
     gene            3272..3457
                     /locus_tag="VHF08_07240"
     CDS             3272..3457
                     /locus_tag="VHF08_07240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068482.1"
                     /translation="MAAEGIVNFDSYAWLAVGLFITGLLAAMVYEKSSSKTKQLKQQQ
                     QQQKHQEVGSSSDIKRD"
     gene            3516..>4139
                     /locus_tag="VHF08_07245"
     CDS             3516..>4139
                     /locus_tag="VHF08_07245"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX2068483.1"
                     /translation="MQKKAIPVISRKINSLLVAPTGSGKTEAAIIPIFTQLSNYTIHH
                     SGKIKAIYITPLRALNNDVLRRIIKYAESQNLRVQIRHGDTTTSTKRKILEDPPDVLI
                     TTPESLAVILTSSKMLKALDCLEWVIIDEVHELVSNERGAHLSIGLERLQAASILPVI
                     RIGLSATLGNLKEAARFISGVNRKCAILIDNSLRVYDIDVKFIKGSLN"
BASE COUNT         1347 a          768 c          708 g         1316 t
ORIGIN      
        1 agaggatttt gacaatattg accttattga aaagaccggt tggaaggtaa ggattagaaa
       61 agctccttta ataatggata tcatcagaaa tattaatgaa attcttcata atacggtaaa
      121 tgagagaatt cgcttttaca gagaggttgg agagaaaatt tttagatcta agttgaatga
      181 aatagcagaa gcaagtttaa tcactctcgg cgggtttggc gaggttggtc gttcatgtgt
      241 attactcaca actcatgaaa gtgaaatttt acttgattgc ggggttaatg gagctgctaa
      301 gaatgcacca cactcctttc caagatttga cttaaccgac ctcaaaatgt acgaaattga
      361 tgcggtaatt ttgagtcatg ctcatcttga ccattcaggt tttttgccag ctcttttcaa
      421 atatggatat cacggcccta tatattgttc tgagccaaca ttgcccttaa tgtatctatt
      481 acaaagagaa tatattaaga ataaagatta tgtatcgttg ttctctcttc aagacataga
      541 cgcagtagtg atgcacacca ttccattatc ctttggaatg gtcactgaca tatctcctga
      601 tataagactc gtgcttggta attctggtca cataatagga tctgcattaa ttcatttaca
      661 tatcggtaat ggcgatcaca atcttgttta tacaggtgat atgaaatttt caaagacatt
      721 atctctagaa aatgcgtcgt ggaactttcc aagagttgaa acgataatca tagaaagcac
      781 tcatggtggc aaggaagaca tttttctgca tcgtgatgag gctgagaatc gccttctcaa
      841 tagtataaac gaaacaatca gtagaaaagg aaaagtcttg attccggtat cggcagctgg
      901 cttatctcaa gagattatgc ttctaattaa tatgtatatg aaggctggta aaattactga
      961 aacaaaggta cttgtcgaaa agatcatttc agaagcaaca tcaatatatg aagcctatcc
     1021 agaatacctt tcaaaagagc tgaatatgga aataatggat aatgaagact ctccatttga
     1081 gtcgagtcat ttcgagacta ttgaatctac aactttagaa tgtgaatctg caataatttt
     1141 ggctccttct tcgatgttaa ttggtggtcc atcgatagaa tatctaaagc agatatgtaa
     1201 tgatcccaat tctaaaatga ttttaacctc atatcaagtg gtggacacgc tgggtagata
     1261 tattgaagat ggcaatcgac aaatcacaat cggtgaccaa agtatcaata tagaatgcca
     1321 aattgaaaag atagaggggt ttagtactca tagtgattat aaccagttga tatcatatat
     1381 taatagatta agacctaaac ttaaacgagt attagttaat catggagaaa aagctaatgt
     1441 acagaatctc gctagctcta tcaataagat gttcaaaatc caaacccagc atccattggt
     1501 acaagaggct ataaaattac tctaaccttt aattattggt agtattgcga taaacatata
     1561 ctactatgaa caataaataa aatagctaat tgaatcagat aatttactca tactgatgtg
     1621 aaacatctaa ttgaaataat atatatactc tattgaaaaa ctattaaggt catattctat
     1681 tattatcgga ctacgcggta ttaataaagt atttaagatt acgtattcat aaaaaaatga
     1741 aatttacgat tggagaagag aaataaattt atttcaagtc gtatgcaccg cgccaaattt
     1801 ttacacctgg tggagttaat acaacccttt cctctcccag cctcgcgata tcgccaccaa
     1861 ttgactgaac atatccatat agttcatcta ttgccttacg taagccttct acatctttct
     1921 gtgccaatgg tgtaactcgt aaaataagga ttgtttgctt cttggcatca tcttttatac
     1981 tggctacgtc gctcatatcg cgcagagtta ttgctttcaa ataaattggt gtcttttgtg
     2041 tctgcatgga accatttatc ctatataatt atagacaaat ccaaaggaat cagcaaatag
     2101 ttatgctggt caaaagacat taacagactg gttgatttta aattcgtaat ccttcaagct
     2161 cggtatcttt tgcaggcaaa gccgatattt cttctttata gccattgatc tcaactttta
     2221 ctttagattg attttcccta ggagcgtcag aataacgtaa cacaattctt gccgccatat
     2281 tcaatatctt actatcatat tctttagatc tcagaataca tctaggtcct acgcattcac
     2341 tggcttccat ttttatatca ctgtccatca ccatagaatc aatgatatag ttttcatctt
     2401 catctctgcc tactaccagc tttgcttcca tagacaatct aaaatgtctt ccgatcttca
     2461 agagttccac atcgttgata cttggaatat ttttagtatg ttccataaga tccctaattc
     2521 tttttgaaaa tgaaggatct gttaacaagc atcctcctgc ggcattgggt ggatcactta
     2581 tgttaaaata ttttgctaga gcaatttgct ctttgcgtga tcttcccttg atattatata
     2641 atttttcacg gtcaaccaat ccatcctttt caggtcctgt aggagttaga tcttttgctg
     2701 aaagaggcct taagatttta cctttcattt ctgcgtcttc ttctattata tgcaaagcac
     2761 gtttattctg actcattggt ctttgaaaaa gaacttcacc agtaacgaca aaatctgccc
     2821 ctattttttc catatattct tttgccgttt tgtacatcat tcccctacaa tcaatacatg
     2881 gattcatccc agatccatat ccatatttag gatgcttcag catttttaga tactcttcac
     2941 cataataaac ggtcttcaaa tgtacgccta attctgaggc aacttcttta acacgatgac
     3001 cgcacccctt tccacaatca aaatcacaaa atggagtctt gatggccact gcctcaatct
     3061 caacgccctg ttctagcatc atacgaacag ctaaattact gtctaatccg ccggacaaca
     3121 atgccactgc ctttgcattc ttctttttcc tgacttcgga ggaattttct acagtattgc
     3181 ttgacattat tatcttagga ttattttact attattaaag ttaattcttg aggcgaatat
     3241 atttattgct gtctcaaaat agaatcaaaa gatggcagct gagggaattg taaactttga
     3301 ttcatatgca tggctcgctg taggattgtt tatcactggt ctacttgccg caatggttta
     3361 tgaaaaatca agttcaaaga caaaacagtt gaaacaacaa cagcagcagc aaaaacacca
     3421 agaagtggga tcttcatctg acattaaaag agactaaagc tgaaccgtta gttagagaaa
     3481 tatttctaaa ggaaggtttc aaatcactaa ctgcaattca aaaaaaagca ataccagtga
     3541 tttcaagaaa aattaacagt ctacttgtag ctccaactgg ttctggtaaa acagaagcag
     3601 ctattatacc aatatttaca caattatcta actatacgat acatcatagc ggtaaaatca
     3661 aggcaatcta tatcactcca ctacgcgcct tgaataatga cgtacttcga agaatcataa
     3721 aatatgctga atctcaaaat ctgcgagtac aaatacgaca tggtgatact actactagca
     3781 ctaagagaaa aattcttgaa gacccaccgg atgtgttgat tacaactcct gaatcacttg
     3841 ctgtaattct aacaagcagt aaaatgctta aggcactaga ttgtttggag tgggttataa
     3901 tcgatgaagt acatgaactt gtatcaaatg aacgaggtgc acatttgtct attggtcttg
     3961 agagattaca ggctgcaagt attctgcccg ttataaggat cggattgtcg gcaacactag
     4021 gtaatctaaa agaggctgcg agatttattt caggagttaa tagaaaatgt gctattctta
     4081 tagataattc tctgcgagta tatgatatag atgtcaagtt tataaagggt tccctcaac
//
LOCUS       DATAAS010000453         3774 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5363220, whole genome shotgun sequence.
ACCESSION   DATAAS010000453 DATAAS010000000
VERSION     DATAAS010000453.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3774)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3774)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3774
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5363220"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(209..784)
                     /locus_tag="VHF08_07250"
     CDS             complement(209..784)
                     /locus_tag="VHF08_07250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4443 domain-containing protein"
                     /protein_id="HEX2068484.1"
                     /translation="MVHVFKALQLMENRGHVSRNLLCQELVLGEGTIKTLLKHLKMHG
                     MIKSTNAGTKMTSKATTIFSELLSYIPEEMNLPKCSIALGKFNYVVLLKQFSFAIKSG
                     VEQRDSAIKMGALGATTMLFKDGKFVMPDTDYDSLKKEPYIYSLLIEKLKPEDKDIII
                     IGSDDMSEKTAELAAKSAALLTIMNHEKHVQ"
     gene            1002..1217
                     /locus_tag="VHF08_07255"
     CDS             1002..1217
                     /locus_tag="VHF08_07255"
                     /inference="COORDINATES: protein motif:HMM:NF021038.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtB domain-containing protein"
                     /protein_id="HEX2068485.1"
                     /translation="MLISKQITNDINAVPKTVIGVLLGILVLGMFMVGYDQGHLFSLA
                     QGDQAFDTMWMHEFYHDMRHSAGFPCH"
     gene            1265..2014
                     /locus_tag="VHF08_07260"
     CDS             1265..2014
                     /locus_tag="VHF08_07260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CbtA family protein"
                     /protein_id="HEX2068486.1"
                     /translation="MKVLTFLATTLVSGAIAGTILGIINQVIVEPYIDKAIDIEIKNA
                     AITEGKVINPSEMSGYRIWQKGGEIVAGTILGTSLSALFGIVFIYIRTSLPGSSNKKK
                     ALALAGIIYLVLFIIPALKYPANPPAVGDPETIYYRQTLYVTFIVISGFSALMLAFIY
                     RTLGNRLSIITKNIIFPLIYAAIIAGAYLALPPNPDKITNVSMDLVQGFRISSVFTMG
                     IFWGMIGIIFGSMWDRFKPHEPPKSQQFKYI"
     gene            complement(2297..3250)
                     /locus_tag="VHF08_07265"
     CDS             complement(2297..3250)
                     /locus_tag="VHF08_07265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068487.1"
                     /translation="MHNKIAHSAEHAFIGSLQYLTGKTLNVRKVEHRKTDNSVFITIP
                     NLDLELIIRAESEVNSLINMGKKIITHSFESLTEAKEHLPSLRANEERIIASNPVRVV
                     EIEGHDLAACAMEHVENLNECSFFLVTRISKNGKDYEISFVVGEQAKETAIALSLKLL
                     KICEEIDANFNTVENTVRKLKTDSEIYLGKLKNLTREKLDSIVPYITEYSKINIIHGI
                     FFNLLDEEIRIFAGRKIAESNSVVVIVANINNQKDDTASIVFARNKSLVNIDCNKLFR
                     EISSEYGRGGGTPHFVTGVVDKERVTAIVNNIIAEVMNCSL"
     gene            3395..3565
                     /locus_tag="VHF08_07270"
     CDS             3395..3565
                     /locus_tag="VHF08_07270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068488.1"
                     /translation="METAVQPGVLGHGVPTIKDIPYLMDMLPWIGLVIGVAIAAVLAT
                     KFLVHKVSYATV"
BASE COUNT         1206 a          638 c          571 g         1359 t
ORIGIN      
        1 ggaagatcta ctattcaaat aataataatc taactggata ttagaacctc tttagatact
       61 aaaatttagt aaaatactat tattccttat cctcctcctt tcttattact aatggtttga
      121 ataccaacac catattagta ataatataat aataaacaat aacaactaca aaaaaataat
      181 atggtgtcaa ttctcctcat tgtgtaaact actgcacgtg tttctcatga ttcataatag
      241 tcaatagcgc agcactcttt gcagcaagtt ctgctgtttt ctcagacata tcatcacttc
      301 ctattattat aatatcctta tcttctggtt ttaatttttc aatcagcaaa ctgtaaatat
      361 atggttcttt tttcaatgaa tcgtaatcag tatcaggcat tacgaattta ccgtctttaa
      421 ataacatagt agtagcacct aatgctccca tttttatggc agaatctctt tgttctactc
      481 ctgactttat ggcaaaacta aattgtttta gtaaaactac ataattgaat ttacctagtg
      541 caatagaaca ctttggaaga ttcatttctt caggaatata ggatagtaat tctgaaaata
      601 ttgtggtagc tttacttgtc attttcgttc cagcattagt agattttatc ataccatgca
      661 ttttcaaatg ttttagtaat gtttttattg tgccttctcc aagaacgagt tcctgacata
      721 gtaaattcct actcacatgt cctctatttt ccataagctg taatgctttg aatacatgta
      781 ccatatcaaa ggaaagaact ctactgggcg catacctccc tgaaatgttt tcaagcattt
      841 taacatactg atgcattatt tgtgatactg ttacctgccc atgaaaaatt taattgtatt
      901 ctaagttgtc catccatcca gactactcat tcaaatgaaa agctcttgtg ttggataaac
      961 taacctcctc tttaaataat agcaccttgt gtagatgcta aatgttaatt agcaaacaaa
     1021 ttactaatga tattaatgca gtaccaaaga cagtaattgg tgtgttgtta ggaatattgg
     1081 tattaggaat gttcatggta ggatatgatc aaggacatct tttcagtctg gctcaaggag
     1141 accaagcttt tgatactatg tggatgcacg agttctatca tgacatgaga cattctgcag
     1201 gatttccatg tcactagtta gtagtttaat gatgatgtaa ctaaacggca ttgagttaaa
     1261 aaatatgaag gtactgacct ttcttgcaac aacccttgtt tctggtgcaa ttgctgggac
     1321 tatattaggg ataattaatc aagttatagt agaaccatat atcgacaagg caatagacat
     1381 agaaataaaa aatgctgcaa tcacagaagg taaagtaatt aacccatctg aaatgtcagg
     1441 atatcgaata tggcagaaag gtggagaaat tgttgctgga actatattag gtacatcatt
     1501 atcagcatta tttggaatag tcttcatata tattagaact tcgttaccag gttcaagtaa
     1561 taagaagaag gcattagctc tggctggaat aatatatctt gtgttattta taattcctgc
     1621 attaaagtat cccgcaaatc cacctgcagt gggcgatcca gaaacaatat actatagaca
     1681 gactctatat gttacattta ttgtcatatc aggattcagc gctctaatgc tggcatttat
     1741 atatagaacg cttggaaaca gattgtcaat aataactaaa aatattatat ttccattaat
     1801 ttatgctgcg ataattgcag gcgcttatct tgctcttcct cccaatcctg ataaaataac
     1861 aaatgtatca atggatctag tacaaggatt tagaatttca agtgtattta cgatgggcat
     1921 attctgggga atgataggta taatatttgg ctcaatgtgg gataggttca aaccccatga
     1981 accaccaaaa tcacagcaat ttaaatatat ataactattg ttattttaga agatgttgtt
     2041 cattttgaat atattgttat aaaacctaag cacgctataa caataataga tataggtaaa
     2101 ttaaattaga tcaaatcagg ccaaaattgt atggtccata ttacaatatc acaagcaata
     2161 caagaagatg aacttgaaat gatcagtgtt ttttgtggat ttattgctat ctattgatat
     2221 ctagattgat tttgtcctca ttgctagtag ccgttttttt atggggactt aaccggtagc
     2281 atatatatat atatatttac aaactacagt tcatcacttc ggcaataatg ttatttacaa
     2341 tagcagttac tctttctttg tcaactacac ctgtaacaaa atgaggcgtt cctccacctc
     2401 gtccatactc ggaggatatt tctctaaata atttattaca atcaatattc actaaggatt
     2461 tatttcttgc aaatacaata cttgctgtat cgtctttctg attatttata ttagcaacaa
     2521 tgactactac cgaattagat tcagcgattt ttcttcctgc aaatatacga atctcttcat
     2581 ctaataaatt aaaaaatatt ccatgaataa tatttatttt actatactca gtgatgtagg
     2641 gtactatgct gtcaagcttt tccctggtta gattttttaa cttgccaaga tatatttcac
     2701 tgtctgtttt taactttctc actgtattct caactgtgtt aaagtttgcg tctatctctt
     2761 cgcaaatctt caatagtttt aatgataatg cgatcgcagt ctcttttgcc tgctctccta
     2821 ctacaaaact aatctcataa tctttgccat ttttagatat tctagttact aaaaagaaac
     2881 tacattcatt gagattctct acatgttcca tagcacaagc agccaaatca tgaccttcaa
     2941 tttcgactac tctcactgga ttggatgcta ttattcgctc ttcatttgct cgtaggctag
     3001 gtaaatgctc ctttgcttca gttagtgatt caaaagaatg tgttattatt ttttttccca
     3061 tattaataag agaattcacc tctgattctg ctctgatgat taactctaaa tcaagattgg
     3121 gaattgtaat aaatacgcta ttatcagttt tacgatgctc tacctttcta acatttagtg
     3181 ttttacctgt taagtattga agtgatccta taaaagcatg ttcagcagaa tgtgctatct
     3241 tgttatgcat attttttata atattttagc ataatatatt atacacgacc tttaaaatta
     3301 ataataatat atctagcatc tgacaatctc acttttggag atatattatt aattcgttag
     3361 caaagaagaa gcattagcat tagtcagaca acgcatggaa actgctgttc aacctggagt
     3421 cttaggtcat ggcgttccaa caataaaaga tattccttat ttgatggata tgttaccgtg
     3481 gataggactt gtaataggag tggctatagc agcagtgtta gcaactaagt tcctagtaca
     3541 caaggtgagc tatgcaactg tgtaacagca gcgcattaaa taaccttttt ttctgttttc
     3601 tttaatgtta ttttttattt tccatattat aattaatttt gtaatgaaag attcttaaaa
     3661 agaaaaaata agtaattctt tgttcattct acttttatct cctttccttt aggttttgcc
     3721 tgttgttttt tattaaagac tatttcgagt attccattct tatatgtaga tttg
//
LOCUS       DATAAS010000454         3828 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4288702, whole genome shotgun sequence.
ACCESSION   DATAAS010000454 DATAAS010000000
VERSION     DATAAS010000454.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3828)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3828)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3828
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4288702"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(178..972)
                     /locus_tag="VHF08_07275"
     CDS             complement(178..972)
                     /locus_tag="VHF08_07275"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX2068489.1"
                     /translation="MKYSRTEGKEEDVLGLVFRDYYFHHKESLAITERNDRFIEAEDP
                     QIWLSKYDEWLDVEKRAMGYVKGKRVLDIGCGVGRHALYLQKERGFDVLGIDRSPLAI
                     KLCKLQGLKKAKVQPITQFTRNAVRKCYSFDTILMLGNNFGLFETPRKAKWLLRKFHK
                     MTCDDAAIIVQSVDPYKKHHEPAHLRYYKINRMKGRMPGQSRMRIRYKSHTGRWFDYL
                     FVSQREMKSIVNGTGVWKIKHFLISADVPDIYIAIIAKEAVMQRHL"
     gene            complement(1327..1458)
                     /locus_tag="VHF08_07280"
     CDS             complement(1327..1458)
                     /locus_tag="VHF08_07280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068490.1"
                     /translation="MVVWIRTYKLYATAKKVCGKIKKTIELWGRENLRACHSSSKTP"
     gene            1578..3203
                     /locus_tag="VHF08_07285"
     CDS             1578..3203
                     /locus_tag="VHF08_07285"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2068491.1"
                     /translation="MSDSKYAYSEFWRIVVILSLVAIVIEYAETMLFPAIPDIIADFK
                     SSYSNSSWVLSGYLIAAAVMAPLVGKLSDIYGKKKVLSVIMTIFVASIAIAGFSTNIE
                     TLIGVRIVQGIGLSMFIIALSIMQSNVPKEKYALANGILASAYFSGSSIGLVLGGVII
                     HYFEWRTVFFSLIPIVVILLTIVIKFLHVKGEHDEEQQDRRNHYSIPARYDGNRNENE
                     TRNMSNKIDEKKENNSDSGKNNSYFVPPLNVKHTFFKSLDITGVITLAVTITLFLTSL
                     TYMENYDSNENAGDYNSIFIIGLASSSVLSLILFLTVEKKAASPLVNLRLIANKTIFP
                     VLMMFLILGFTMFMVYQTIPILVRAPAPLGFEGSTVTSSLVLLPFTLVFLALSPTVSI
                     LVRKFGNMKLFMAGSVISAVGYFSIFLFHSTELEVSITLTIVSSGLALLNTVGMNIVM
                     LSTPKRFGGVIIGMVQVLMFAGMSTGPVVGGIFMERNQESIDGILTSYPSALAYDLIF
                     LAASIASLSFVALAIILKMQKNLSNVSDPIHNP"
BASE COUNT         1160 a          719 c          656 g         1293 t
ORIGIN      
        1 tctattgggt agtggtatag ctctggaaac aaagacttct tcattgtttc ttactttcag
       61 ctataatgtc tctctttaga ttattataat accaaaagta gttgtaattg ttcagttgca
      121 aagacgcttt tagtaaatta gcttttagtg ataatattgt gagatattgt atggatatta
      181 cagatggcgc tgcataactg cctctttagc aataatcgca atgtaaatgt caggaacgtc
      241 cgctgaaatt aagaagtgct taattttcca tactcctgtt ccatttacta tactcttcat
      301 ttctcgttgg gatacaaaaa gatagtcaaa ccatctcccc gtatggctct tgtatcttat
      361 tctcatcctt gattgtccag gcatgcgacc tttcattcta tttatcttat agtacctcag
      421 gtgagcaggc tcgtgatgtt tcttgtatgg gtctacgctc tgtactatga ttgcagcatc
      481 atcacacgtc attttatgaa atttgcgaag caaccatttt gcctttctag gagtctcaaa
      541 cagaccaaag ttatttccaa gcataaggat tgtatcaaaa gagtagcatt ttcttactgc
      601 attacgtgta aattgtgtta tgggctgtac tttggctttc tttaaacctt gaagtttgca
      661 tagctttatc gctaaagggg atctatcaat acccaagaca tcaaaacctc tttccttctg
      721 aagatacaga gcatgcctgc ctactccaca gccgatgtct aatactcttt taccttttac
      781 atatcccata gctctctttt caacatccag ccattcatca tatttagaca gccaaatttg
      841 tggatcttca gcttctatga atctgtcatt tcgttctgtg atggcaagac tttctttgtg
      901 atgaaagtaa taatcccgaa atacgagccc tagaacatct tcttctttac cttctgtcct
      961 actatacttc ataatatgac ctaagttaaa gaaattaaaa aatcaggcgt tttgattcaa
     1021 atgaattttt attcaaatcc ctccggcttt acatcacaag aaaccttttt agcttctaaa
     1081 cacattcaaa aaagactagt aaagaatcca atttttgaag tgatatcact gctagtcccg
     1141 acgggcccgc ttctttatca gttcttttta gaattattat agcttaacga tctagaagct
     1201 ccgaggaaca cactcgtatt caatccccat taattgatag agatgaaatc gtcaaacaga
     1261 aatgatttaa ctcaaggctt gtagttttta tcaaacttca tgacattctt tgaatcttgg
     1321 aagctctcaa ggtgtttttg agctagaatg gcaagctcga aggttctctc ttccccacaa
     1381 ttcaattgtt ttttttattt tgccacatac tttcttagca gttgcatata acttgtaagt
     1441 tcttatccaa accaccataa tggggattag agagtagttg taatattctt actcgtgtta
     1501 cgataataaa tgtctcattt aataaactga catagcaata gctaataata taacaataac
     1561 ggtgttcgaa aaaggcattg tcagattcta aatacgctta ttctgagttc tggagaatag
     1621 ttgttattct aagtctagtt gcaatagtaa tagaatatgc agaaacaatg ctatttcccg
     1681 ctattccaga tattatagcg gattttaaaa gcagctattc taattcatca tgggtattat
     1741 caggttactt aattgcagca gcggtaatgg cacctcttgt tggaaaactc tcagacattt
     1801 atggaaaaaa gaaggtactc agtgttatta tgacgatatt tgtggcaagt attgccatag
     1861 ctggttttag tacgaatata gaaaccctga ttggcgtcag aatagtccaa ggaataggac
     1921 tttccatgtt cataatagcg ttgtctatca tgcaatcgaa tgttccaaag gaaaaatatg
     1981 cactagctaa tgggattcta gcctcagcat atttcagtgg atcctctatc ggtcttgtgt
     2041 taggtggtgt cataattcat tactttgaat ggagaacggt attcttttcc ctgattccta
     2101 ttgtggtaat acttttgaca attgtaataa aattccttca tgtaaaagga gagcatgatg
     2161 aagagcaaca agatagaaga aatcactaca gtatacctgc cagatatgat ggaaacagaa
     2221 atgaaaatga gacaagaaat atgagtaata agattgatga gaagaaagag aataacagtg
     2281 acagcggtaa aaataacagt tactttgtac ctccactaaa tgttaagcac acctttttca
     2341 agagtttaga tattacagga gttataacac tggctgtcac cataacattg tttcttactt
     2401 ctttaacata tatggaaaac tatgatagca atgagaatgc tggcgattat aactcgatat
     2461 ttatcatagg attggcaagt agctcagttc tttcattgat attattctta acagttgaga
     2521 aaaaagcagc atcgccacta gtcaatctta gattaattgc gaacaaaact attttccctg
     2581 tacttatgat gtttttgata ttgggtttta caatgtttat ggtataccag accattccaa
     2641 tattggtaag agctccagca ccattaggat ttgaaggaag tacggtaact tcttcacttg
     2701 tattgcttcc ttttacgctt gtattcttag cgttgtctcc aacagttagt attctggtta
     2761 gaaagtttgg aaatatgaaa ttatttatgg caggtagtgt gattagtgct gttggatatt
     2821 ttagtatctt tctattccac tctactgagc tagaagtatc aataaccctc acaattgtgt
     2881 cttccggatt agctttgtta aatacagttg gtatgaatat agtaatgtta tctacaccta
     2941 aacggtttgg aggagtaatt ataggaatgg ttcaagttct tatgtttgct ggcatgtcga
     3001 cgggacctgt cgtgggaggc atatttatgg agagaaatca agagtctata gatggtattt
     3061 taacttcata cccttctgct ttagcttatg accttatatt cttggcagct tcaattgcat
     3121 ccctttcgtt tgtagcatta gcaataatat taaaaatgca aaaaaatctt tcaaatgtat
     3181 cagatcccat tcataatccg tgaagttact atcccatgat aattgttgca ataatgctct
     3241 gttgcacgat ccgttttgcg tatctgtgca acactaaata aaatgtcaat ttaccagagc
     3301 acattgatta agtaaaatat agaggtaatt caaaggtaca ctaattctca atttgctcgt
     3361 aaagatttag gttactttat ctccccaaca cgtagcctaa acttttgaaa aggcggagga
     3421 attatttctc tacactaagc ttttagtctt cgcacttgag cgagttctca atatctatat
     3481 caagtcaaca tctacatgat tcgaacaacc ctaccataaa cctcattcac cttttgaaag
     3541 cgatacaact tctataacgc acacgatgtg atgcttgcta cagaaatcaa gcatctattg
     3601 tgtttctcga atcctccaac agttaacttt actcattaat catattcgcg tatattgatt
     3661 caaatgtatt gtatccaaat ccccgtgcct aatatttcag aaacctttta gcttctcttg
     3721 cattaaccca gactagcaag aagaatccac tttttgaagc gatatcacac tgctagtccc
     3781 gacgggcccg ctcccttatc agttcttttt agaaggctct cccgagat
//
LOCUS       DATAAS010000455         1741 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2676312, whole genome shotgun sequence.
ACCESSION   DATAAS010000455 DATAAS010000000
VERSION     DATAAS010000455.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1741)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1741)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1741
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2676312"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..642
                     /locus_tag="VHF08_07290"
     CDS             <1..642
                     /locus_tag="VHF08_07290"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0050661 - NADP binding [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEX2068492.1"
                     /translation="PLALSFPSLMELANYNGVLLRFSGTVGGGTPILEFAKRCLKGDR
                     IISFKGILNGTTNYILSKMEEGLTFDSALNDAKQKGYAEAVPSLDIEGYDAAAKLVIM
                     ANLIMGMKVTIKDINRTGISSVQVSDVQRAQERGNAIKLLAICDKNKLDVRPTEVSKK
                     DPICVDGTLNAVTFFSDHSGHQTIIGRGAGGMETGSAILRDLIEIKDTIFEHR"
     gene            801..1454
                     /locus_tag="VHF08_07295"
     CDS             801..1454
                     /locus_tag="VHF08_07295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HEX2068493.1"
                     /translation="MYSGELEVQAKRKALAVLHDEINRILNSARDLSTLFASIMKGDN
                     KDVQVCLERMTNAEEVIENLRRKITREVAEIGSLMVSREDVLRTAYIVDDIAGFITGI
                     AFRLSNIRTSSLKKGNFDDDLRDLIGMAVDTIFKLNEMARALSINASSVIELAQEVQK
                     LERQIDAKYRVIIIKVLNELAVTKDILLLKDVVEGIEGMVDKCQEASDSLTILALSM"
     gene            1454..>1741
                     /locus_tag="VHF08_07300"
     CDS             1454..>1741
                     /locus_tag="VHF08_07300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-intron lyase"
                     /protein_id="HEX2068494.1"
                     /translation="MNAVIGKLVENRIVIWEVEESRNIFGNGYYGKPLGISKPKGTQF
                     DAPLVIDLIEGCYLIQMGRLIAYHVDGRQISLRALKALCRKQYIDFDNKYLV"
BASE COUNT          600 a          242 c          379 g          520 t
ORIGIN      
        1 cctcttgcac tatcttttcc atcgttaatg gaattagcaa attataatgg tgttttgtta
       61 cgttttagcg gaacagtagg aggaggtaca ccaatcctag agtttgcaaa acgatgttta
      121 aagggcgatc ggataatttc atttaaaggg attcttaacg gaactacaaa ctacatacta
      181 agcaaaatgg aagaaggttt gacatttgat agtgccttga atgatgcaaa acaaaaaggc
      241 tatgcagaag cagtgccctc tctagatatc gaaggatacg atgcagctgc gaaacttgta
      301 ataatggcaa acttgattat gggtatgaaa gtcaccatta aggatatcaa caggactgga
      361 atcagttctg ttcaggtttc tgacgtacaa agagcccaag aaagaggcaa tgcaataaaa
      421 ctcttagcga tctgtgataa aaataaacta gatgtaagac caactgaagt atcaaaaaag
      481 gatccgatat gtgtagatgg tacattaaat gcagtcacat ttttctctga tcattcaggt
      541 catcaaacaa taattggccg aggagctgga ggtatggaaa ctggtagcgc aattctccga
      601 gacctcatag aaataaagga cacaattttc gaacatagat agcaagttga aaaggaatat
      661 tgtagatatc taatatttaa cattgcagct ttttaatcca ttattgctat agtattgatt
      721 tatagatatt ataattttta aacgatggat ttattgtaat gtcaaaagga ttaaaagtct
      781 gatgaagtag tttacatgag atgtacagtg gagaattgga agttcaggct aaacgaaaag
      841 cattagctgt tttacatgat gaaattaata ggatcctaaa ttcagctaga gatttatcaa
      901 ctctttttgc ttctattatg aaaggggata acaaagatgt tcaggtatgt ctggagcgta
      961 tgacaaatgc tgaggaagtt atcgagaacc taagaagaaa gattacacga gaagttgctg
     1021 aaataggtag tcttatggtg tctcgagagg atgtattacg tactgcctat attgtcgatg
     1081 atattgctgg ctttattact gggattgcct tcagactatc taatataaga acctcttctt
     1141 taaaaaaagg aaattttgat gatgatctga gagatcttat tggaatggct gttgatacta
     1201 ttttcaaatt aaatgaaatg gctcgtgcat tgagtataaa tgcttcaagt gtgatcgagc
     1261 tggcccaaga ggttcaaaag ctggagcgtc agattgatgc taaatataga gttattataa
     1321 taaaagttct taacgagctg gcagtcacaa aggatatttt actattaaaa gacgtagtag
     1381 agggtattga agggatggta gataaatgtc aagaagcatc tgactctctc actattctgg
     1441 cattgagtat gtaatgaatg ctgtaattgg aaaactagta gagaatagaa tagttatatg
     1501 ggaggtagaa gaatcacgaa atatttttgg taatggttat tatggcaagc ctttgggaat
     1561 ttcaaagcca aaaggtactc aatttgacgc gcctttggtc atagatttaa tcgaaggttg
     1621 ttatctaatt caaatgggta gattgatagc ataccatgtc gatggacgac agatatcact
     1681 aagagcctta aaggcacttt gtcgaaaaca gtacattgat tttgataaca agtacttagt
     1741 a
//
LOCUS       DATAAS010000456         2692 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2677413, whole genome shotgun sequence.
ACCESSION   DATAAS010000456 DATAAS010000000
VERSION     DATAAS010000456.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2692)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2692)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2692
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2677413"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(202..372)
                     /locus_tag="VHF08_07305"
     CDS             complement(202..372)
                     /locus_tag="VHF08_07305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068495.1"
                     /translation="MIGNLINNIFIIGGNVFHAKEIERCLKKRSYNSNVSTTTAAISH
                     FSAKSIEIDLVL"
     gene            complement(394..1347)
                     /locus_tag="VHF08_07310"
     CDS             complement(394..1347)
                     /locus_tag="VHF08_07310"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HEX2068496.1"
                     /translation="MQSEAKSMLVVSTMTERKIWMDGSLVNWDEAKIHILTHSLHYGT
                     GVFEGIRCYKTTNGQAVFRLPEHIRRLMDSGKIYLMNIQYSKDQLQEAVIDTIRANEI
                     EECYIRLIAYYGYGKMGVNPLPNKVSVAIALWKWDEYLRGDKQNYGARMMVSSWARID
                     GRSMPVHAKATANYANSALARVEALKAGFDEAIMLNANGMVVEASAENIFIVKDNILI
                     TPPVMSGALNGITRDSILTLARERRIPYEIRDIARDELYLADEVFLTGTAAEVKSVIE
                     IDNRTIGDGKTGAITQRLKMLFESVVHGEHKKFSKKWLMFV"
     gene            complement(1301..>2692)
                     /locus_tag="VHF08_07315"
     CDS             complement(1301..>2692)
                     /locus_tag="VHF08_07315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEX2068497.1"
                     /translation="IDGVLIPKIMDRIKQMKEESKIVAVFSAPLVNYEEKVISMTDVA
                     IKVGRNYASSNPIEIEVLREVYERIANEHVIKKFHKEFFQHLDKFYHQVIVSLKQATE
                     NRRFVDVTRSRTLAYSGEVTISYLMDYVMRSYGIKSDHVNIEKWPIITDDNFEAANFL
                     SEESRQNFNHLINLIEQNEVVSIGGFIGKTIDGLETTYERGGSDRTAADIAILLHGHY
                     NTKVDFEKDNAVLSADPKIVKDDLEYIKHLSYNEAKLAGMFGMKILDPIAIKEIDDND
                     LDIPIVITNMTNPYNTTIIQRTLPNTQDNNLVKIVTGKKNCAIVRMESIAATYLIASL
                     EKDKQYHDFIKLSPYKRDDTEITRLLFLDADYVRRQERHFRAYYPKVEIVYERGVVTL
                     IGDMMWRMPKIASTASSIVGEHNINILNLDAQEETSRILIVVEDKGVNVADAVKAIHA
                     KRSKIHASSKYYD"
BASE COUNT          774 a          552 c          394 g          972 t
ORIGIN      
        1 aactaactta atttaactat ttgcaattaa attttatatc aaggtaggct ttcccatctt
       61 tgaatttgat atgaactatt tttcatacct atctaagacc tcatcatcat ctcatctatt
      121 cctcatattc aaagtatatc agattcagta atacaaccaa taaatgatta cagtcagatt
      181 acctaaatat atgaatataa gttagagaac aaggtctatt tcaatacttt tagcactgaa
      241 atgactgatt gctgctgttg ttgttgatac attcgagttg tatgatctct tctttagaca
      301 tctttcaatt tctttagcat gaaatacgtt tcctcctatt ataaatatat tattgatgag
      361 attccctatc aataaattta ttcaatttat ctgtcaaaca aacattagcc actttttgct
      421 gaacttctta tgttctccat gaaccaccga ttcaaaaagc atttttaagc gttgtgtaat
      481 tgcacctgtt tttccatcgc caatggtcct attatcaatt tctataactg attttacttc
      541 tgctgcagtt ccagttaaaa atacttcatc agctaagtat aattcatccc ttgctatatc
      601 gcgaatttca tagggaattc tcctttctct tgctagagtc aatatgctgt ctcttgtgat
      661 accattcaag gctcccgaca ttactggcgg agtaatcaaa atgttatctt tgacaatgaa
      721 aatgttttct gcgctagctt caacaaccat gccatttgca ttaagcatga tcgcttcatc
      781 aaatcccgct tttagtgctt ctactcgagc tagggcagaa ttagcataat ttgctgtcgc
      841 ttttgcatgg acaggcattg atctaccatc gattcttgcc catgaagaaa ccatcatacg
      901 tgcgccataa ttttgcttat ctcctcttaa atattcatcc cacttccata atgcaattgc
      961 cacagaaacc ttattaggca gtgggttaac acccatcttg ccatagccat aatatgcaat
     1021 tagacggata tagcattctt ctatttcatt tgctcttata gtgtcaatta ctgcctcttg
     1081 aagctggtct ttagagtatt ggatattcat caagtatatt ttcccgctat ccattaaccg
     1141 tcgaatgtgt tcgggcaatc gaaaaaccgc ttggccatta gtggttttgt aacatcgaat
     1201 tccttcaaaa actcctgttc cataatgtaa actatgtgta aggatatgaa ttttagcctc
     1261 atcccaattt acaagggatc catccatcca tatttttcgt tcagtcatag tacttactac
     1321 tagcatggat tttgcttcgc tttgcatgaa ttgcctttac tgcgtcggct acgttaacac
     1381 ccttatcttc aacaactatt aaaattcttg atgtttcttc ttgagcatcc agattcagaa
     1441 tattgatgtt atgttctcca actatactac tagcggtaga ggcgattttt ggcatgcgcc
     1501 acatcatatc tccaatcaga gtaacaacac ctctttcata aacaatctct accttgggat
     1561 aatatgctcg gaaatggcgc tcctgccttc ttacatagtc tgcatcaaga aaaagcaatc
     1621 ttgtaatttc agtatcgtcc cgtttgtaag gggataactt tataaaatca tgatattgtt
     1681 tatctttttc gagtgaagct atcagatagg tggcagcaat actctccatt cttacaatcg
     1741 cacaattctt ctttcctgtg acaattttca ctagattatt atcttgtgta tttggtagag
     1801 ttctctggat tattgtagta ttatatggat ttgtcatgtt tgttataact attggaatat
     1861 ccagatcatt atcatcaatt tcttttattg ctatgggatc tagaatcttc atcccaaaca
     1921 ttcctgctaa ctttgcttca ttataagata gatgttttat gtattcgaga tcatctttta
     1981 caatctttgg atctgcactt aatactgcat tatctttttc aaaatctacc tttgtattat
     2041 aatgaccatg taataatatt gcaatatctg cagctgttct gtcggaaccg ccgcgctcat
     2101 atgtcgtttc aagtccatca atagttttac cgataaaacc acctatagat acaacttcat
     2161 tttgctctat caaattaatt agatgattaa agttttgtct tgattcttcg ctcaaaaagt
     2221 ttgcagcttc aaaattatca tctgtaatta ttggccattt ttcaatattc acatgatcgg
     2281 acttgatacc ataacttcgc ataacatagt ccataagata agagattgta acctcaccgc
     2341 tatatgcaag ggttctagat ctggtaacat caacaaaacg cctattctca gttgcctgtt
     2401 ttaatgaaac tattacctga tggtagaatt tatcaagatg ctgaaagaat tctttatgaa
     2461 actttttgat aacatgctca ttagcaatcc gttcataaac ttctcgtaaa acttcaatct
     2521 ctattggatt ggacgaggcg tagtttcttc ccacctttat cgcaacatct gtcatggaaa
     2581 tcactttttc ttcataatta acaagagggg cggagaaaac agcaacgatc ttagattcct
     2641 ccttcatttg ctttattcga tccataattt ttggaattag gacaccatct at
//
LOCUS       DATAAS010000457         5913 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4841584, whole genome shotgun sequence.
ACCESSION   DATAAS010000457 DATAAS010000000
VERSION     DATAAS010000457.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5913)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5913)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5913
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4841584"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            303..707
                     /locus_tag="VHF08_07320"
     CDS             303..707
                     /locus_tag="VHF08_07320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S6e family ribosomal protein"
                     /protein_id="HEX2068498.1"
                     /translation="MAHFKLVVSDNKGKSISQELKDRAANPLLGSKIGEIIDSSVIGI
                     AGGKMKITGGSDKSGTPIRPDVHGGVKKYVLLSRGVGMRNTTEGNRIRKLIRGNMITE
                     EIYQLNCSLVEGSLPEKSASSNTNEIADVKKS"
     gene            809..2074
                     /locus_tag="VHF08_07325"
     CDS             809..2074
                     /locus_tag="VHF08_07325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit
                     gamma"
                     /protein_id="HEX2068499.1"
                     /translation="MLHWKETLPDWYIKEFGYQPSINIGTSGHVDHGKTTLIEAITGI
                     WTSAHSEELRRGITIKVGYADAAFYKCQNCPPPVCYSTQPTCTNCGGQSELIRVVSFV
                     DSPGHESLMANMLSGAALMDGSILVVAANEKVPQPQTREHLLALQVLGIQQIVIVQNK
                     VDLTEYEKARDNYEDIKNFVKGSIAEQAPVIPVSAQHKLNIDALIEAIENTIKTPPRT
                     NNAPAIMHVLRSFDINKPGIPIKQVKGGAIGGALVQGEFQIGDEIEIRPGFLEEKKSK
                     YEPINSTIATLGTGAGIVERVRPGGLVAIGTKLDPTFIKSDSLIGSVVGKPNTLPKDV
                     EDITVEVHLFDTAVGTQDMVKVEPVKVKESLRLNIGTAATVGTVTNSKDSKIEIKLKK
                     PVCLIPKSRVAISRRIADRWRLIGAGMAV"
     gene            2078..2476
                     /locus_tag="VHF08_07330"
     CDS             2078..2476
                     /locus_tag="VHF08_07330"
                     /inference="COORDINATES: protein motif:HMM:NF037434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068500.1"
                     /translation="MDVLCDTSFLMVIVSTPIRQLDRVESQIGKLNLLVPSIVIDELK
                     RLQQKAGPKRSMIAKTAIDISHVRFKVIETVKSQHVDDAIVEYALRHKCAAATIDTAL
                     RKRLIKNNVLVITISNNRLIIANNRDNKQV"
     gene            2514..3173
                     /locus_tag="VHF08_07335"
     CDS             2514..3173
                     /locus_tag="VHF08_07335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX2068501.1"
                     /translation="MFDYEGIQFHWMGHDGFRIVGENKKTIYIDPFQIQKAQQNKNDA
                     DILLLSHNHFDHLSVEDLKHVINHNTTIVAAKECIEQLKGIQVKEIKDVRPGDKLVIE
                     DIPIEIISAYNTNKKFHPKDDEKVGFIFTINNQRIYHTGDTDIIPEMKSVNADIALVP
                     VSGTYVMTSDEAAQAVNNFIKPRKLAIPMHYGSIVGTEKDAETFRQLVKVCETKILDR
                     E"
     gene            complement(3441..3596)
                     /locus_tag="VHF08_07340"
     CDS             complement(3441..3596)
                     /locus_tag="VHF08_07340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068502.1"
                     /translation="MKGYSSPFIKTKILTTIKANTMIPIDEIPHYLKKKKKKKKKNDE
                     TKKTNQK"
     gene            3636..>5913
                     /locus_tag="VHF08_07345"
     CDS             3636..>5913
                     /locus_tag="VHF08_07345"
                     /inference="COORDINATES: protein motif:HMM:NF014565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6541 family protein"
                     /protein_id="HEX2068503.1"
                     /translation="MIYFYYWQYLKKEEETSILIIMLDISRTLLKTKGFEFQTRHLLI
                     IAVLAIAFSTAFIMRSYPAKYGFYLNEFDPYFDYRATKFIVENGLEQYWQWHDTMSWY
                     PEGRDIPKTSQSGLHIVSAYLYMIFGGGSSLLDFTIILPVILGSLTTIIVFALVRTLG
                     GTTSGMFAALLFAFTPSIIQRGNLGWFKSEPLGLFFGLLATYLFISAIKHHEIKYAIA
                     KAVTGGIILGLANASWGGVQYFSIPLSIFFICLPFFRKDIQLPMYVAIAFTIFTLISA
                     GAFPRPGMSFVLGLPGIALIGGTVFLVIANFLKKISQPRREIRNTLFLLIAFFAIAIG
                     FLLAGTYYSSSFRYLNAINPFLSSQNPLVESVAEHFTPTVVDYFTDYSILLMFAGLGA
                     WIAFKRRDDMSLFALIIGITGVYVSATFARLMVFSSIGIIVLASLGLYEVTRNILEYR
                     EHLALRSTSLKTAKLKKRLEHGRVQTPIKRIVRVAYVGIIIFMLSIPLLDYRGILYPQ
                     NSNWLSSADVPPSIANGGTGYRLQTDDWINALDWISKNTPKDAVIASWWDYGYWITTM
                     GNRTSLADNATINQTRIETLAKMFMEDEEEGIKIAKDLKADYILVYVVGQRYGGVNGT
                     SFYTLGNGGDESKKQWFIRIGGFNEIDYLEQDGFTPTSQFWNGTLLGNLIPFTPVSYA
                     SFQGGVLTNIQPQYQPGSVGLYTKNIKYPGDAEDNQPLRLVYSSDSFRTDEPGLVFGV
                     LLYEVNDDYTPKTTTTDLS"
BASE COUNT         1976 a          976 c         1155 g         1806 t
ORIGIN      
        1 tgagaagata agttaattat aaaagaaagg actatatttg cgaatttgag cagtgcatta
       61 actttatcgt agtatcacca aaagctgcct ttgtcagagc atgttagttc attaccacag
      121 tttcgacagc ggagatgaca gacttgaatt ggtgtcatta tgaatccgca tcgaagacat
      181 accactaaat tcctgcctgg agtttcatcc ttggcactca tactaacttg atgtaaagtg
      241 aggtttttat tcttttcaat tctgcaaaga ttaataaaga cataactatg cttgaattta
      301 tcatggctca ctttaaactt gttgtttctg ataacaaagg taaaagtatt tctcaggaat
      361 tgaaagatag ggcagccaat ccattactgg gttcaaagat cggggaaatt attgattctt
      421 ctgttatcgg cattgcagga ggtaagatga agattactgg aggaagtgat aaatcaggaa
      481 cccctattcg tccagatgta catggcggag tgaaaaagta tgttttgctt tctagaggtg
      541 taggaatgag gaatactact gagggaaata gaataagaaa gttaatcaga ggaaacatga
      601 ttactgagga aatatatcaa ctgaactgtt cccttgtgga aggcagtcta cctgaaaaat
      661 cagcctcttc aaataccaac gaaattgcag atgtaaagaa gtcataaata attacaacta
      721 aatttcttta gatcgctgtt gatgtctatc ttgaaataaa aatttttttg ggcaattacc
      781 ttaatatccc tctagaaatt taccatcatt gttgcactgg aaagaaacat taccagactg
      841 gtatatcaag gaatttggtt accagccaag catcaatata ggtacatctg gtcatgttga
      901 tcatggtaaa acaacattaa tcgaagccat aactggtatc tggacaagcg cacacagtga
      961 agaattgaga agaggcatta caattaaagt aggctacgct gatgcagcat tttataaatg
     1021 tcagaactgt ccacctccag tttgctattc aacacagccg acctgtacta attgtggagg
     1081 gcagagtgag ctaataagag ttgtgagttt tgtcgactcc cctggacatg aaagtttgat
     1141 ggccaatatg ttatccggag cggcgttgat ggatgggtca attcttgtag ttgcagcaaa
     1201 tgaaaaggtg cctcaaccac aaaccagaga acatcttctc gcacttcaag tacttggaat
     1261 acagcaaata gtaattgttc agaataaggt tgacttaacc gaatatgaaa aagcacgaga
     1321 taattacgaa gatattaaga attttgtaaa aggaagtata gcagagcagg ctccagtcat
     1381 tccggtgtca gcgcaacaca aactcaatat tgatgcgtta attgaggcca ttgaaaatac
     1441 aatcaaaaca ccgcctagga caaataatgc accagctata atgcatgtat tacgatcatt
     1501 tgatattaac aagccgggta ttccaataaa acaagttaaa ggtggagcaa tcggtggagc
     1561 attagtccaa ggagaatttc agatcggaga tgaaattgag attcgccccg gattcttaga
     1621 ggaaaagaag agtaaatatg aaccaattaa ttctactatc gctacacttg gaacaggagc
     1681 cggtatagta gaacgcgtaa gaccgggagg gcttgttgcc attgggacaa aattagatcc
     1741 aactttcata aaaagcgact ccttaattgg ctctgttgtt ggtaaaccta atactctgcc
     1801 aaaagatgtg gaagacatca ctgtagaggt tcatcttttt gatacagcag ttggtacaca
     1861 ggatatggta aaagtagaac cagtaaaggt aaaggagtca ttgagattga atataggtac
     1921 tgcagccacc gtgggaacag ttacaaattc aaaagacagt aagatagaaa taaagttaaa
     1981 aaaacccgta tgcttgatcc ctaagagcag agtggcaatt agcagaagaa tagcagatag
     2041 atggagactg atcggcgcag gcatggcagt ctaataaatg gatgttcttt gcgacaccag
     2101 ttttttaatg gttatagtgt ctacccctat aagacagtta gacagagttg aaagccagat
     2161 aggcaaactg aaccttttgg ttcctagtat tgtaattgat gagcttaaac gtttacagca
     2221 gaaggctgga cctaaacgtt ccatgatagc taaaaccgct atagatattt cacatgtcag
     2281 attcaaagtg attgaaactg taaaatcaca gcatgttgat gacgcaatag ttgaatatgc
     2341 acttagacac aaatgtgctg ctgcaactat cgatacagct ttgcgtaaaa gactaatcaa
     2401 aaataatgtg ttagtaatta ctataagcaa taaccgatta atcattgcaa ataacagaga
     2461 taataaacaa gtttaaattt aatttatcac aatattagca ctagataagc gatatgtttg
     2521 attatgaagg tatccagttt cattggatgg gtcatgatgg atttcgaata gttggtgaaa
     2581 acaaaaaaac aatctatatt gatccatttc aaatacaaaa agcacaacag aataaaaatg
     2641 atgcagatat acttctactt tctcacaatc actttgatca tttaagtgta gaagatttaa
     2701 aacatgttat taatcataat acaactatag ttgccgctaa ggagtgcatt gaacaattaa
     2761 agggaataca agtaaaagaa ataaaagatg taaggccagg tgataaatta gtgatagaag
     2821 atatcccaat tgaaatcatc tctgcatata atacaaataa aaaattccat ccaaaagatg
     2881 acgagaaagt tggctttatt tttacaataa ataatcaacg catatatcat actggtgata
     2941 cagacataat tcctgaaatg aaatccgtaa atgctgatat agcacttgtt cctgtctcag
     3001 gtacttatgt tatgacatca gatgaggctg ctcaagcagt aaataatttt atcaaaccaa
     3061 gaaagctcgc aatacctatg cattatggat caatagttgg aacagaaaaa gatgcggaaa
     3121 cattcagaca acttgttaaa gtatgtgaaa caaaaatcct agatcgtgaa tgattagaaa
     3181 agaaaatgta actacttcat tctttttaaa gatttaaata cgatttcctt tttttatata
     3241 attgaaaatg gcagcaaaga aaaaagcagc aaagtctgca aagaaaggag agaagtcaaa
     3301 gtccaagaag tgatcatgta gatgatcatt cttgtgatac gttagttgac tggcattccc
     3361 tccttctttt ataatctgct gcctattgtg atcataaata ataaaaggat taatttctta
     3421 atctcttgta tctgtatcag ttatttttga tttgtctttt ttgtctcatc attcttcttc
     3481 ttcttcttct tcttcttctt caaataatgt ggtatttcat cgataggaat cattgtattc
     3541 gcttttattg ttgttaaaat ctttgttttg ataaaagggg atgaataacc tttcaagttg
     3601 agatagagat tatttgcgtc tatagatctt tttatatgat ttatttttat tattggcagt
     3661 accttaaaaa agaggaagaa acatcaattc tcattattat gttagatatc agtaggacgc
     3721 ttcttaaaac aaaagggttt gaattccaaa caagacatct tttgataatt gcagttctag
     3781 ctattgcttt ttctacagca tttattatgc gatcgtatcc agcaaaatat ggattctatc
     3841 ttaatgaatt tgatccttat tttgattatc gtgctactaa attcattgtt gagaatggcc
     3901 tagaacaata ctggcaatgg catgacacaa tgtcttggta tccagaaggg cgtgatatac
     3961 ctaaaacgtc ccaatcagga cttcacatag tctctgctta cctctatatg atctttggtg
     4021 gcggcagctc attgttagac tttacgatta ttctgcctgt aatccttggt tcacttacta
     4081 caataattgt ttttgctctt gtgaggacac tgggtggtac gacgtcaggc atgtttgcag
     4141 ctctgctttt cgcattcacc ccttctataa tacaacgagg aaatcttggc tggttcaaat
     4201 cagaaccact tggactattt tttggattac ttgcaactta tctatttatt tctgcaatca
     4261 aacatcatga aataaagtat gctattgcca aggctgtaac aggaggtatt atacttggac
     4321 ttgctaatgc atcatgggga ggagttcaat acttcagcat tccattatca atattcttta
     4381 tttgtcttcc tttctttaga aaagatatac aacttccaat gtatgttgca attgcattta
     4441 caatatttac gctaatatcc gctggagcat ttccaagacc tgggatgtct tttgtattag
     4501 gtttgcctgg tattgcgttg atcggtggta cagtattttt ggttattgca aacttcttga
     4561 aaaaaataag tcaaccaaga agagagatcc ggaatactct atttcttttg atcgcattct
     4621 ttgcaatcgc aatcggcttt cttttagcag gaacatacta ttcttcttcc tttagatatc
     4681 ttaatgcaat taatccgttt ctttcatcac aaaatcctct tgttgaatca gtagctgaac
     4741 actttacacc aactgttgta gattatttca cagactattc aatactgttg atgtttgctg
     4801 ggctcggtgc ctggatagcg ttcaaacgta gagatgatat gtcgttattt gcattaatta
     4861 taggaattac aggagtgtat gttagtgcaa cgttcgctag attaatggta ttttcatcga
     4921 taggaatcat tgtactggct tcattaggat tatatgaggt cacaaggaat attctagaat
     4981 atagagaaca tttagcatta agatcaactt cattaaagac tgctaaacta aagaaaaggc
     5041 ttgaacatgg tagagtacaa acgccaataa aaagaatcgt tagagttgcg tatgtcggga
     5101 taataatttt tatgctttca attccattgt tggattatag aggaatactt tatccacaaa
     5161 actctaactg gttgagctct gctgatgtac ctccgtcgat agcaaatggt ggaacaggct
     5221 atcgattaca aactgatgac tggataaatg ccttggattg gatatcaaag aatactccaa
     5281 aagacgcagt aattgcttca tggtgggact atggttattg gataacaact atgggcaata
     5341 gaactagctt agcagacaat gcaactatta accaaacaag gattgaaact ctggctaaaa
     5401 tgtttatgga agatgaagaa gaaggtatta aaattgctaa ggatttgaag gcagattata
     5461 ttttagttta tgtagtagga caaagatatg gtggagtcaa tgggacttca ttttatactt
     5521 tgggaaatgg aggcgatgag agcaagaagc aatggttcat taggatagga ggatttaatg
     5581 agatcgatta tctagaacag gacggtttta ctccaacttc acaattctgg aatggaactc
     5641 ttctaggtaa tctaataccg tttacacctg tctcttatgc ctcatttcag ggaggagttc
     5701 tcacaaacat ccaaccacaa tatcagcctg ggagtgtggg gctctataca aagaacatca
     5761 aatatcctgg tgacgcagaa gataatcagc cattacgttt ggtatattca tcagatagtt
     5821 tcagaacaga cgagccaggt cttgtctttg gagttctact ctatgaggta aatgatgatt
     5881 acactccaaa aacaactacg acagatttat cgg
//
LOCUS       DATAAS010000458         4287 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2679932, whole genome shotgun sequence.
ACCESSION   DATAAS010000458 DATAAS010000000
VERSION     DATAAS010000458.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4287)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4287)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4287
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2679932"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..958)
                     /locus_tag="VHF08_07350"
     CDS             complement(<1..958)
                     /locus_tag="VHF08_07350"
                     /inference="COORDINATES: protein motif:HMM:NF040138.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HEX2068504.1"
                     /translation="MDKAIHYNIKLPILLTLILLALSTITAIAVSGETNNIPGVKITS
                     HYQDQQVPIGELNVSGISTDNATNDCQVYLDWNDSKPFQAATATGPAGVNDYSTWFFL
                     YSKNYHMIKEGNNELTAKVSCDAVPGSTKYYSLNVTGITADTEDPLSYGSGDSIDPKK
                     VVVDKNNDSLLVKPENPPVSIISEYLDSNIEPAISSARAEQANANNTKPYLLPAPSVR
                     ENRESNFGNTTSLEGRGQLKLIPPIADAGSDSIVNEGSSISLNASKSIDPDGIILSYI
                     WKQNPHPLITLGDAETKIWTFTAPSVSSDTTFTFKLTVSDNNG"
     gene            complement(1377..2015)
                     /locus_tag="VHF08_07355"
     CDS             complement(1377..2015)
                     /locus_tag="VHF08_07355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VTT domain-containing protein"
                     /protein_id="HEX2068505.1"
                     /translation="MVNIDEIFAFYDDFGYLGILLISFVGSIIVFIPIPYFPVLVTAA
                     FNKELDPHILALSSAIGAVVAKMIIFYVSYYGRNILSTTTKRRILPLQRLLRKYGWPG
                     AFAAALTPIPDDLIYIPLGLAKYNPWKFATATFLGKFVLNEIIVLGAVFLGRPFIENL
                     GSESTDPGYLLAGAVASAIVLGIMVYLYVKIDWAKIIGKWFPWTLEDDPNEK"
     gene            complement(2262..3707)
                     /gene="proS"
                     /locus_tag="VHF08_07360"
     CDS             complement(2262..3707)
                     /gene="proS"
                     /locus_tag="VHF08_07360"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004827 - proline-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006433 - prolyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEX2068506.1"
                     /translation="MKETGITVKKNENFSEWYSQVVLKTGLADYAPVKGFIALPPYGY
                     AIWESIRDILDVKFKETGHQNGFLPVLIPESLLVREEDHFAGFTPEVFWVTKAGDNSL
                     SEKLALRPTSETLAYSIFAKWVTSYRDLPLKINYWNTALRAEIKATKPFVRTSEFLWQ
                     EGHTVHASREEAEDEVMSILSIYNELIQNHLAIPTVTGLKSDKEKFVGAEYTVTLEGM
                     MSDGKALQMGTSHHLGQRFSKPFEIKYVGKDTQDHFAWQTSWGASWRLIGALIMVHGD
                     DKGLIIPPKVAPIQVIIIPIYKDKDEEIVKSSADKLYIELKKSGIRAHVDKRDEYTSG
                     WKFNEWEMKGVPLRVNIGPRDIEKRQVELVRRDMKNKILVDRGQLTEHVISLLDQIQS
                     NLLNRAKKLLEDNITKTTNYDTLKLTVQNKGGFVLAGWCGNRQCEDKIKEETGADIRV
                     IPFEGQEESNSAICIYCHQPAKKIVVFAKAY"
     gene            complement(3760..4047)
                     /locus_tag="VHF08_07365"
     CDS             complement(3760..4047)
                     /locus_tag="VHF08_07365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068507.1"
                     /translation="MSESFETKYLVPVKVVEKSIKLTDEAKTELQSIGMMDDKGKLKL
                     KGVSPKMLKRMKLEAVDCPVLKTEVGFIQCYVCKNFHSRVSGKVYCKGEPL"
BASE COUNT         1298 a          803 c          732 g         1454 t
ORIGIN      
        1 aaccattatt atcactcact gtcaatttga acgtaaaggt agtgtcagaa gatacactcg
       61 gagcggtaaa agtccaaatt tttgtttctg cgtctcctag agttatcagt ggatgaggat
      121 tttgtttcca aatataagat aagataatac catcaggatc gatactttta gaagcattaa
      181 gactaatact tgaaccttca ttaactatcg aatcactgcc ggcgtctgct atgggtggaa
      241 ttaattttag ttgtcctctt ccctcaagcg aggttgtatt gccaaagttg gactctctat
      301 tttcacgaac cgatggagca ggaagtagat atggtttggt attatttgca tttgcttgtt
      361 ctgcccttgc actagagatc gctggctcga tatttgagtc aagatattct gatattatag
      421 aaacaggagg attttctggt ttaactagta acgagtcatt atttttatcc acaaccacct
      481 ttttaggatc tatagaatca ccactcccat acgataatgg atcttctgtg tctgcagtta
      541 ttccagtaac atttaaagaa taatattttg tagaacctgg aacggcgtca caagatactt
      601 ttgcagtaag ttcattattt ccctctttta tcatatgata atttttggaa tatagaaaaa
      661 accatgtaga ataatcattt actccagccg gacccgttgc tgtagcagct tgaaatggtt
      721 tcgaatcatt ccaatccaaa taaacctgac aatcattcgt ggcattatcc gtcgaaattc
      781 ctgaaacatt aagttcaccg attggaactt gttgatcttg gtaatgggag gtaattttaa
      841 cgccaggtat attattggtc tctccagaca cagctatggc agtaatagtc gataaagcta
      901 gtaatatcaa agttagaaga atcggaagtt taatgttata gtgaatagct ttatccatca
      961 cgagatacaa aacaaatata aaaaatattt ttaagtagtg ttgttaaaag gcttagagct
     1021 gatgtctaat atatatatat aatctgttaa tcgatggtaa agcagtattt gttctaatcg
     1081 aataaatata attgagcaat atggatttca tcatatctcc gaactcgatt caattgatct
     1141 agtaggctaa tagtatctat atgcgtaaca caacacataa tgacaattat tagtagttga
     1201 tccaatattt tatgtgcatt taatggagat aataaaataa aatgataaga ttcacagaat
     1261 gacaagtagg gtaatttgtg tgttgcaata caaaaaattt ctgatcatat gaaacctata
     1321 gaattacttt attcaagagt aaattaccaa gtagagcgaa tatctcacta cggaatttat
     1381 ttttcattag gatcatcttc aagtgtccaa ggaaaccatt ttccaattat ctttgcccaa
     1441 tcgattttta cataaaggta taccattatt cccagcacta ttgcacttgc aacagctcca
     1501 gcaagtaaat atccaggatc ggtagattct gaaccaaggt tttcaatgaa cggtcttcct
     1561 aagaaaaccg ctcctaatac aattatttca ttcagaacaa attttccaag aaaggttgca
     1621 gttgcgaatt tccaagggtt atactttgca agtccaagag gaatatagat cagatcatcg
     1681 ggtataggag taagggcagc ggcaaaggct cctggccaac catactttct aagcagccgt
     1741 tgaagaggaa gtattcttct ctttgtcgta gtgctcagga tgtttcggcc ataataactc
     1801 acgtagaata ttatcatttt tgctacgact gctccgattg cactagaaag agctaaaata
     1861 tgaggatcca attctttgtt aaaagccgcg gtgacgagta caggaaaata tggtatagga
     1921 atgaaaacta ttatgcttcc aacaaaactt attagtagta tgcctaagta tccaaagtca
     1981 tcatagaatg caaagatttc gtcaatattg accaaataaa ctacctctat agatacataa
     2041 ctatatctag gtgttagtca atagactgat aattgtatct gatttaaagg tagctaagag
     2101 tatatatgaa tttgtgtggg acaagattga catgacctgc atagttattt tggtttattt
     2161 atgggttatg tatcgtcgtc ttggcttatc gtcattttcc atggtaggat gaacataaag
     2221 aaatcgctaa gtaactatag gtataactaa atttgtacac cttagtaagc tttagcaaag
     2281 actacaattt tttttgctgg ctgatgacaa tatatacaaa tagctgaatt agactcttcc
     2341 tgtccttcaa atggaatgac tcgaatatct gctcctgtct cttcttttat tttatcttca
     2401 cattgtctat tcccgcacca tccggctaag acaaatccac ctttattctg aacagtcaat
     2461 tttaatgtat cataatttgt cgttttggta atattatctt cgagaagttt cttggctcta
     2521 tttagcagat tgctttgaat ttgatctaat agagagatga cgtgttcggt taactggccc
     2581 cgatctacaa ggatcttatt cttcatatcc cgtctaacaa gctctacttg acgtttttca
     2641 atatctctcg gacctatatt tactcgaaga ggtacacctt tcatttccca ttcattgaat
     2701 ttccatccgg aagtatactc gtccctttta tcaacatgag cccggattcc tgattttttt
     2761 aattcaatat ataacttgtc ggcggatgat tttactatct cttcatcttt gtctttgtat
     2821 attggaatta tgatcacttg aataggtgct accttaggag gaataataag acccttgtca
     2881 tcgccgtgaa ccattatcaa tgctccaatc agccgccaag atgctcccca agatgtctgc
     2941 caagcaaaat gatcttgtgt atcctttcca acgtatttta tttcaaaagg tttggaaaac
     3001 ctttgtccta aatgatgaga agtacccatc tgtaatgcct ttccatcaga catcattcct
     3061 tccaatgtga cagtatattc tgcaccaaca aacttttctt tatcactttt caatccagtt
     3121 accgttggaa tggctaaatg attttgaatc aattcgttgt aaatagataa aattgacata
     3181 acttcatctt ctgcttcttc acgactagca tggaccgtat gtccttcttg ccagagaaat
     3241 tctgaagtcc tcacgaaagg ttttgttgct tttatttctg cacgtaatgc agtattccaa
     3301 tagttgattt ttaatggtag atctctgtag cttgtcaccc acttcgcaaa tattgagtat
     3361 gcaagagttt ctgaagtagg gcgtaaagca agcttctctg acaggctatt atctcctgct
     3421 ttggtcaccc aaaatacttc tggcgtaaat cctgcaaagt gatcttcttc tcttacaaga
     3481 agactctctg gaattaacac aggcaaaaag ccattctgat gtcctgtttc tttgaactta
     3541 acatctagta tatctctaat agattcccag atagcataac catatggagg aagagctatg
     3601 aatcctttta cgggagcata gtcagcaaga ccagttttta gcactacttg cgaataccat
     3661 tcactaaaat tttcattttt tttaactgta attccagtct ccttcacaga attcaacatt
     3721 cacacgcaga aggattagct ttatgaagtt ttggtgattt tatagtggct ctcctttgca
     3781 atataccttt cctgaaactc tactatgaaa gttcttacaa acgtaacatt ggataaatcc
     3841 tacttctgtt tttaggacag ggcaatccac agcttctaac ttcatacgtt taagcatttt
     3901 aggactaacc cctttcagct tgagtttacc tttgtcatcc atcataccaa tactttgcaa
     3961 ttctgttttc gcttcgtcag ttaatttaat ggatttttca accactttaa caggtactaa
     4021 atatttagtt tcgaagctct cactcatgat aataaaagaa gtcaatagtc atataagatc
     4081 cttcctgata ggtaaatctg tttttcatcc ttccaaaatt ttagaagttt gctttatgac
     4141 agagctgcga caggacatag gacgaggaga tgctttcttc gtgtgttccc aagttgtttg
     4201 tttcagcaaa ctctcttagg atgagaattt tttattctat tcgtagttta caatcctcta
     4261 attttgaagc atttcgtatt tttagtt
//
LOCUS       DATAAS010000459        10565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4294271, whole genome shotgun sequence.
ACCESSION   DATAAS010000459 DATAAS010000000
VERSION     DATAAS010000459.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 10565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10565
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4294271"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..181
                     /locus_tag="VHF08_07370"
     CDS             <1..181
                     /locus_tag="VHF08_07370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="iron-sulfur cluster assembly accessory protein"
                     /protein_id="HEX2068508.1"
                     /translation="EDDKVFEQNGVKVLIDSYSQNYLKGANIDYIDSLMGSGFKINNP
                     NVTKSCSCGHSFTTE"
     gene            complement(283..1557)
                     /locus_tag="VHF08_07375"
     CDS             complement(283..1557)
                     /locus_tag="VHF08_07375"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HEX2068509.1"
                     /translation="MSDSTTTTQALINPFEVALKQLAEAAKIIDLDNGMHEILSHPKR
                     VLTVAIPTRMDNGEIKVFTGFRSQHNDARGPFKGGIRYHPQVSIDEVKALSMWMTWKC
                     AIADLPYGGGKGGIICNPKDMSEGELERMTRRYAYGISDIIGPHTDIPAPDVYTGGKE
                     MAWIMDTYSALKGNFVQPELITGKPLAIGGSLGRNEATGRGLSFTIREAAKKLKINMK
                     TATVIVQGFGNAGQFAAQLVEEQGAKIIGASDSQGGVYNKNGIQVGALRRHKEKTGSV
                     VGFSGTKSISNEDLLEQDCTILIPAALESQLTKKNAGKISTKIIAEAANGPTTTEADE
                     TLYKNKILVIPDILANGGGVTVSYFEWLQNLRREYWSENEVNERLDRNITKAFDDVYN
                     IYEKYDVNMRKASTLLAVNRVVEAIKIRGLWP"
     gene            complement(1706..2053)
                     /locus_tag="VHF08_07380"
     CDS             complement(1706..2053)
                     /locus_tag="VHF08_07380"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEX2068510.1"
                     /translation="MILSSLVMNIGGSEWAIVIILGLILVFGPKKLPQLSRTFGKASG
                     EYEKAKQLFRLEQENMKKHVNQNTYLMGPKILGPVASQRQKLEEIAKSLDIDYAGKTD
                     EELRFQITDKIQR"
     gene            2373..2846
                     /locus_tag="VHF08_07385"
     CDS             2373..2846
                     /locus_tag="VHF08_07385"
                     /inference="COORDINATES: protein motif:HMM:NF025044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEX2068511.1"
                     /translation="MIKSCYLNTISTMAYRSIDSDTIDQLRGYIDRLNEESQNGSVIV
                     VEGKRDVAALISVGFNGNITVFHHFRGVTDFVDNYHLNRKKIILLLDMDRKGKQITSK
                     LVTLLQYKGNNVTLFYKRALAKITNGKVRHVEDLVTYAPHLSGITGSRKDLYFYI"
     gene            2987..4255
                     /gene="dnaG"
                     /locus_tag="VHF08_07390"
     CDS             2987..4255
                     /gene="dnaG"
                     /locus_tag="VHF08_07390"
                     /EC_number="2.7.7.-"
                     /inference="COORDINATES: protein motif:HMM:NF003108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase DnaG"
                     /protein_id="HEX2068512.1"
                     /translation="MKLPSTGIVKYHVKLRFEVDGLVEKADIIGAIFGQTEGLLGPEM
                     NLNELQKVSKVGRIEVNVDTKPNMAKGDALIPMSTDISTAALIAAAIESIDKVGPFQA
                     KFALFGIDDIRAIKKKVIVDRAKKIVQEWATKTISEGEEMLKDVYDATKPGKLTAFGK
                     AQLACGPGVFDSDWIILVEGRADVINLLRAGFDNAIAIEGARIDETITRLTEGKKVIA
                     FLDGDRAGDLILKELQGLVQIDKVLRAPSGREVEECTPLEIADILKEAVPFVSANVQQ
                     SQSLPQTQLDHRQTQKHERQIQYDRDEQQQQVPDIDSKDSDLVPKETAEILSMVREVY
                     PQINETLEAIILDGSLKTLLKIPVSDVVKKLDSAEGAKLLVLDGIVTQRLVEAADKVG
                     IEYIIGHRRGDIKKSTDIRIRTFEDMGITN"
     gene            4261..4962
                     /locus_tag="VHF08_07395"
     CDS             4261..4962
                     /locus_tag="VHF08_07395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF120 domain-containing protein"
                     /protein_id="HEX2068513.1"
                     /translation="MLEIRLQHILTVIQILMLGGRHNFIEITTTDLAKAIKRSQQAVS
                     KQLLELENVGYIERLKYGKKFRVRITDKGFFQIESLSSIIKSAIESSPDTIDLEGIII
                     SGMGEGAYYMSLDGYRKQFKDKLGYDPYPGTLNVKLVDQVYMNARRELGKFPSIFIEG
                     FRDKTRTYGWAKCYLAVINNTAIKNAAILLLERTHYDDSMLEVIAPCSIKNSIGVKNG
                     DRISIRVYINNAKKS"
     gene            complement(4959..5576)
                     /locus_tag="VHF08_07400"
     CDS             complement(4959..5576)
                     /locus_tag="VHF08_07400"
                     /inference="COORDINATES: protein motif:HMM:NF013621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HEX2068514.1"
                     /translation="MDKAILASLYVSALEPQVSSFDRINYKLPIGMEVYRLKVQRLSE
                     LGFLEKNDNYKLSFFGRDALTVVLVGGVFDIIHPGHIHTLKAAKALGDVLVVVIARTS
                     TALKIKKDRRIYHNERLRKELVSSLNLVDLAIIGKEGTLYDTVEYVKPNIIALGYDQA
                     HSEKDVADNCQKRNLNIRVTRVNTPIPETKSSKIKDEMGEFFYRI"
     gene            6268..7203
                     /locus_tag="VHF08_07405"
     CDS             6268..7203
                     /locus_tag="VHF08_07405"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068515.1"
                     /translation="MALPTLLSNILKTLEFKTHIRRKHHGTGKPIGEDGRQSIATSNT
                     SMQFIPDLIMDLKNNNNYNTNHQVHPNTFSGSFYLRNEEQTPKKRDALDEWLEFWRPI
                     IQKMKEILEIKKFISELSSYSSSLQQPSIITGLGQTPIIDTIIPPVTIMPLQPTPLAS
                     APSPQQQEQKKENTNPGTDLIINLFIKSTLVAEEIHRRSRGGGEGEEGFITIPQEPLL
                     SPLVNNITSDDNNNNSKKRGETNLSTKNTRKEEDQLEEDSHDIEGHPLSRNKLLMTIR
                     TMMAVLIMFIWIMMMVENGEETKISLVMLLMCVRG"
     gene            7188..7358
                     /locus_tag="VHF08_07410"
     CDS             7188..7358
                     /locus_tag="VHF08_07410"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068516.1"
                     /translation="MCKGITHPLIEVKEYYYQIKKKVGTKRKEINIRRIREGRRMKDV
                     IKKVTDNWILYD"
     gene            complement(7667..8395)
                     /locus_tag="VHF08_07415"
     CDS             complement(7667..8395)
                     /locus_tag="VHF08_07415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2068517.1"
                     /translation="MCPGSELPIGVKETETETKGVFSENIEYSMSDQLFNNIVGYNDV
                     KKLFRMSLSSEKPVHVLLVGPPASAKTLFMLECIKLERSFFTLGSHSTKSGMIDYLFK
                     DRPRYLIVDEIEHMPMKDQTALLSLMETGIIAETKYQKTRNTQMKTWVFATSNGTERM
                     LTPLLSRFIVLHFKQYKYENFCEIAVHILAQEGVSSEIATACADAVWLKMKSKDIRDC
                     IKIGRLAKMKEDVDWIASTLKNYK"
     gene            8548..9537
                     /locus_tag="VHF08_07420"
     CDS             8548..9537
                     /locus_tag="VHF08_07420"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008465 - glycerate dehydrogenase activity
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="D-glycerate dehydrogenase"
                     /protein_id="HEX2068518.1"
                     /translation="MKKKVYVTRLIPEPALSILSKECDIVVNKKASPPTKKEILSNIR
                     GMDAILCTLSDTIDREIMDAAGPNLKVISSYSTGYDHIDIEEANRRGIYVAYTSDILT
                     ESTADLTFALILSLARRVVEADKFVRKKLWKYGWMPKLYLGSDVNGMTLGIFGLGKIG
                     SAVARRAKGFDMKILYYNRHRIINQLDDPIANYVDINRLLKESDFLSIHANLNKHSFH
                     FFNETKFRKMKNTAFVINTSRWQIIDQRALIKALRNRWIAGAGLDVYEKEPICSSNAL
                     LRMNNVIILPHIGSATYHTRSKMARVAAENILNILNGIEPLYLVNPQILKNLD"
     gene            complement(9686..9982)
                     /locus_tag="VHF08_07425"
     CDS             complement(9686..9982)
                     /locus_tag="VHF08_07425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068519.1"
                     /translation="MPKYCSVRVNGKDCHMPSSYIVSIASLKEEYMIGMVCIDHRDRL
                     EERIRVMQSEGSVPMGTIKIQPAKIISTDCIKGTDEDRMEISLKRGITMPENDI"
BASE COUNT         3567 a         1806 c         1862 g         3330 t
ORIGIN      
        1 cgaggacgac aaagtatttg aacaaaatgg agtcaaagta ttgattgata gctatagcca
       61 aaattatcta aaaggtgcaa atatagacta tatcgatagt ttgatgggtt ctggatttaa
      121 gataaacaac cccaatgtca ccaaaagctg ttcttgtgga cattcattta ctactgaata
      181 agtcatgagg aaataataat aatattatta ttatattatt attatactat attattcttc
      241 tagtctttct gtgttgttaa cttatcgggg taaggataat aactatggcc ataatcctct
      301 aatttttatt gcttcgacaa ctctatttac agctaatagt gtgcttgctt tccgcatatt
      361 gacatcatat ttctcatata tattatagac atcgtcaaat gcctttgtaa tgtttctgtc
      421 aagtctttca ttcacttcat tctctgacca atattctctc ctaagattct gtaaccattc
      481 aaaataagaa actgtaacac ctcccccatt agcgaggata tctggaatta ctaaaatttt
      541 atttttatat aaagtctcat cagcttcagt tgtagtagga ccattggctg cttctgcgat
      601 tattttagta ctaatttttc cagcattctt cttagtgagt tgactttcga gagctgctgg
      661 tatcaatata gtacagtctt gctctagcaa atcttcattg ctgatagatt tagttccaga
      721 gaaacctact acagaacctg tcttttcttt atgtcttctc agagcgccta cttggatacc
      781 atttttgttg taaactcctc cttgtgaatc tgatgcacct atgatttttg caccctgctc
      841 ttctacaagc tgagctgcaa attgaccggc atttccgaat ccctgtacaa tgactgtggc
      901 agttttcata ttaattttta gttttttggc agcttctctt atagtaaaag ataatccgcg
      961 accagttgcc tcattccttc caagagaacc accaattgca agaggcttac ctgtaataag
     1021 ttctggttga acaaaattgc ccttaagtgc tgaataggta tccatgatcc aagccatttc
     1081 tttgccacca gtataaacat caggagctgg aatatctgta tgaggcccaa taatatcaga
     1141 gataccataa gcataacgtc ttgtcatacg ctcaagttct ccttcggaca tgtcctttgg
     1201 attacagatg ataccaccct taccacctcc atatgggaga tctgcgatcg cacatttcca
     1261 tgtcatccac atagaaagcg ccttgacttc gtcaatactg acttgaggat gatatctgat
     1321 acctccttta aaaggtccac gagcatcatt atgttgtgat ctaaagccag taaagacttt
     1381 gatctcccca ttatccattc tagtcggaat tgcaacagtc agaacccttt ttggatggga
     1441 taaaatctca tgcataccat tatctagatc tataatctta gcggcttcgg caagttgttt
     1501 taaagccact tcgaatgggt ttattagtgc ttgggtagtg gtagtggagt cagacaatac
     1561 aatggtttgg aaaacgggat atatttaagt gttgaatacc aactgatgca agattttgca
     1621 agcaacagaa aattaagtac gtcaagttat tatgagacat caactagaca acttttttta
     1681 ataacttaaa caatttttca gagtactaac gctgtatttt gtctgtaatc tgaaagcgta
     1741 actcctcatc agtcttgcct gcataatcga tatcaagtga tttagctatt tcctcgagct
     1801 tttgtcgttg tgaagcaacc ggtcctaaga tttttggacc cataagatac gtattttggt
     1861 taacatgctt tttcatattt tcctgctcta gtctgaataa ttgttttgct ttttcatatt
     1921 cccctgatgc ttttccaaaa gttctggaaa gttggggtaa ctttttcggt ccaaatacta
     1981 aaatgagacc taaaattatt acaattgccc attcagatcc accgatattc attaccaggc
     2041 ttgataatat cattgttctt taatggatcc agctagaatt agtattttaa gttatcttct
     2101 attaatgtag atctgttaaa cagctcaaat gcttttcaaa aaattataca ttgtctgata
     2161 tgtatataca tctgcaaaat aagcaactat tctgggtcag atgatcaatt agataagata
     2221 gactattcta ggaaacaggt attaatgcaa gatagcatgt tagaatgact cctatagaag
     2281 tactatatat catactaatt tattatgtcg ggtcttaata tcatcttcac tatcaaatgt
     2341 aatgcaatat cactacaaaa caagtaacaa taatgattaa atcttgttac cttaatacta
     2401 tttcaacaat ggcttatcgt tcaatagaca gcgacacaat tgatcagcta cgtggatata
     2461 ttgataggct taacgaggaa tcccagaatg gttctgtcat agttgtggaa ggaaaaagag
     2521 atgtagcagc tcttattagt gtaggattta atggtaatat aacggtattc catcatttta
     2581 gaggtgttac agatttcgtt gataattatc atctaaatcg aaagaaaata attcttctct
     2641 tagatatgga cagaaaaggt aaacagataa ctagtaagtt agtgacccta cttcaatata
     2701 aaggaaataa cgtcacttta ttctataaaa gagccttagc aaaaattact aatggaaagg
     2761 ttagacacgt agaagacctt gttacttatg caccccattt gtctgggatt actggctcac
     2821 gaaaagatct ttatttttac atatgaatac gttgaaataa gtctttgtta ttaatgggtt
     2881 agaaaatagt tattattatt ttgttcaact aaaatcagac aatgcgtcaa agcacttata
     2941 ttcaagccag actactttaa ttttacttaa tagtaaatat gaggttatga aattgcctag
     3001 cacaggtatt gtgaagtatc acgttaaatt aagattcgaa gttgatggtt tggttgaaaa
     3061 ggccgatatc atcggtgcga tttttggaca gacagagggt cttttgggac ctgaaatgaa
     3121 tttaaatgaa ttgcagaaag tttctaaagt tggcagaata gaagtcaatg tagatacaaa
     3181 accgaatatg gcaaaagggg atgctttaat tcctatgagc acagatattt caactgcggc
     3241 attgattgct gcagcaattg aaagtatcga caaagttggg ccgtttcaag ccaagtttgc
     3301 cttgtttggt atcgatgaca ttcgagcaat aaagaaaaag gtcattgttg accgtgccaa
     3361 aaagattgtg caagaatggg ctacaaagac aatcagtgaa ggagaggaaa tgctcaaaga
     3421 tgtttatgac gctacaaaac caggtaagct tactgcgttt ggtaaagctc agctcgcttg
     3481 tggcccggga gtattcgatt ctgattggat aatactagtt gaaggtagag ctgacgttat
     3541 caaccttcta cgcgccggct ttgataatgc aatcgctatt gaaggtgcaa gaatcgatga
     3601 gacaattacc agacttacag aaggtaaaaa agttattgca tttctagatg gtgacagagc
     3661 tggcgatttg atactaaaag agttacaggg actcgtacag atagataaag tcttaagagc
     3721 tccttctggc agagaagttg aagaatgtac tcctcttgaa atcgcagaca ttttaaaaga
     3781 agctgtacct tttgtatctg ctaacgttca acagtcgcaa tcacttccgc aaacacaatt
     3841 agatcataga caaacacaga aacatgagag acaaatacaa tatgacagag acgaacaaca
     3901 acaacaagta ccagacatag atagtaagga tagcgatctt gtacctaaag agactgcaga
     3961 gattctttcg atggtaaggg aggtctatcc tcagattaat gaaactctag aggcaatcat
     4021 attggatggt tcattaaaga cactccttaa aatacccgtt tcggacgtag tcaagaaact
     4081 tgatagcgca gaaggagcta aattgttggt tcttgatggt atcgttacac agagattagt
     4141 tgaagcagca gataaagttg gaattgaata tataatcggc catagaagag gcgatataaa
     4201 aaagtcgacc gacataagga ttcgaacttt tgaagacatg ggaattacta actaaatacg
     4261 atgctagaga taaggctaca gcatatactc actgtaatac agattttaat gctaggagga
     4321 cgtcataatt ttatcgagat cactactact gatctagcta aagcaataaa gagatcacaa
     4381 caagcagttt ccaaacagct tttggaacta gaaaatgttg ggtatattga acgtcttaaa
     4441 tatggcaaaa aatttcgagt tagaatcaca gataaaggct ttttccagat cgaaagttta
     4501 tcatctataa taaaatctgc cattgaatct agccctgata caattgattt agaaggaata
     4561 attatttctg gaatgggtga aggtgcatac tatatgtcct tagatggata tcgtaaacag
     4621 ttcaaagata agcttggtta tgatccgtat cctggcacat taaatgtgaa acttgtagac
     4681 caagtatata tgaatgcaag acgagaatta gggaaatttc catccatttt catcgaaggt
     4741 tttagggaca agactcgtac gtatggatgg gctaaatgct atttggccgt tattaataat
     4801 actgcaataa agaatgcagc aatacttctg ttggagagaa cacattatga tgatagcatg
     4861 ttagaggtca ttgcaccatg ttctattaag aattctattg gagttaaaaa tggcgaccga
     4921 attagcatta gagtatacat aaataatgct aaaaaatctt aaattctata aaaaaactca
     4981 cccatctcat ccttgatttt tgaacttttt gtttcaggaa tcggcgtgtt tacccttgta
     5041 actctaatgt tgagattcct cttttgacaa ttatctgcga catctttttc gctgtgggct
     5101 tgatcgtaac ctaacgcaat aatattaggc ttgacatatt ccactgtatc ataaagtgtt
     5161 ccctcttttc ctatgatagc aagatcgacc agatttaaag atgatacaag ctccttacgt
     5221 aatcgttcat tatgatatat tcttcgatct ttttttatct tcaatgcagt agaagttctt
     5281 gcaatcacca ctacaagaac gtcccctagt gctttggctg ccttcagtgt atgaatatga
     5341 cctggatgaa ttatatcaaa tacaccacca actaaaacaa ctgtcaaagc atcccttcca
     5401 aagaaactga gtttatagtt atcgtttttt tccaaaaaac cgagctctga aagtcgttga
     5461 acttttaacc tgtagacttc cattcctatc ggtaacttgt aattgattct atcaaatgat
     5521 gacacctgag gctccaaagc gcttacatat aatgaagcaa gaattgcttt atccaatggg
     5581 tccataattt attgtgaaga catcttcagg caaaataaac aatgcgttag tagtaaagca
     5641 atatgccatc tggaatcgtt caaaagtgag gatttttaat cagcaatata ttagataaag
     5701 atttagaata tggtcttgag agtcatctgt tgtgcttgtc aaaagcatac taaactaatt
     5761 ggaaatatat tgtagtttgc agctcctttc ccttcctttc tacacggaaa tagtcatcaa
     5821 acttttcagc tctatcttac tacactgaat ggtttttttc aattaggttt tgttatatga
     5881 caactagata tatgatgata ttcttatttt ttagtttgag gagggagtct ataaaattct
     5941 gtgtacagcg aaattgcagt tactgcagta actgcaaagt gactgcagtc atttttgaaa
     6001 ttaaaaaata aactgataac agattacatc ttgatcggtc atctgagcac cgttacagta
     6061 atacattaaa taaattattg atatagtatg aaaagaaaat agttctttag gttatttcct
     6121 gcagataaca agtagtaaaa agataataag atttcctata tagttgatta caaaaactgt
     6181 ttgtattctg ctttttcaat gttaactctt aaaagcaatc agacatgtaa gcacatcgaa
     6241 aagtaaaatg acaagatcca gacaaaagtg gcattgccca cattgctctc aaacatcctc
     6301 aagacactgg aatttaagac acacattaga agaaagcatc atggaacagg aaaaccgata
     6361 ggagaagatg gaaggcaatc tattgctacg tctaatactt ctatgcaatt tattcctgat
     6421 ttaattatgg atttgaagaa taacaacaat tataacacga atcatcaggt acatccaaac
     6481 actttttctg gatcattcta cctcagaaat gaagaacaga ctcctaaaaa aagagacgca
     6541 ttagatgaat ggcttgaatt ctggcgtcct ataatccaaa aaatgaagga aatactggaa
     6601 ataaagaagt tcatcagtga actttcttct tattcttctt ctttgcaaca acctagcatt
     6661 attactggtt taggccagac tcctattata gatacaataa tcccaccagt tacaataatg
     6721 ccattacagc caacaccact agcatcagca ccatcaccac aacaacaaga acaaaaaaag
     6781 gagaatacca atccagggac tgatttaatt atcaatttat ttattaagtc aactcttgta
     6841 gcagaagaga ttcacaggag atcaagagga ggaggggaag gagaagaagg ttttattact
     6901 attcctcaag aaccactgtt gtctcctctt gttaataata tcacttctga cgataataac
     6961 aataatagta aaaaaagagg agaaacaaat ttatcaacta aaaatactag aaaagaagaa
     7021 gatcaacttg aagaagatag tcatgatata gaaggccatc cgttgtccag aaataaatta
     7081 ttaatgacaa taagaacgat gatggcggtg ttgatcatgt ttatttggat tatgatgatg
     7141 gtggaaaatg gggaagaaac aaaaataagt ttggtaatgt tattgatgtg tgtaagggga
     7201 taacacatcc tcttatagag gtcaaagaat attactatca aataaagaag aaagttggaa
     7261 caaaaaggaa agagatcaat attaggcgaa tccgagaggg aaggaggatg aaggatgtga
     7321 taaaaaaagt cactgacaac tggatattat acgattgatc ctgacgtaca acatcaagaa
     7381 aaaaggaaga taatatagtt gataacgcaa ccgtactatc tgagttattg caatttgaca
     7441 ccattgatgt tcgatagatt ctcttacata tgcttatgta atattccttt aacttttatc
     7501 ttaataagat tctaaaaccc attgaagtgt tatatcttat tccatagact gtttgcatag
     7561 gctccgctat gatcataaaa aattaacggt actggaaata gcggtaatgt tatcttaact
     7621 atctagtgat tggtgttgaa cttattgaaa aagatcgtat ttattattat ttgtagtttt
     7681 tcaaggtact tgcgatccaa tcaacatctt ctttcatttt tgccagacga ccaattttta
     7741 tgcaatctct tatgtcttta gatttcatct ttagccagac tgcatcagca caggcagtag
     7801 caatttcaga ggaaactccc tcttgagcaa gtatgtgcac tgctatctca cagaagttct
     7861 catacttata ttgcttaaaa tgtaatacta taaatctaga aagcaatgga gtcaacatac
     7921 gttctgtgcc attgctggtt gcaaagaccc atgttttcat ttgtgtattg cgagtctttt
     7981 gatattttgt ttcggctata atacctgttt ccatcaaact caaaagcgcc gtttgatctt
     8041 tcattggcat atgttctatc tcatctacaa tgagatatct cggacgatct ttgaaaaggt
     8101 aatctatcat tcctgacttt gtgctgtgac taccgagtgt aaaaaatgat cgttccagtt
     8161 tgatacattc tagcataaaa agcgtcttag cagatgcagg aggaccgact agcaaaacat
     8221 gaaccggttt ttcagaagat aatgacattc tgaataattt ttttacgtca ttatacccaa
     8281 cgatattatt aaaaagttga tcggacattg aatattcaat attttcagaa aacacacctt
     8341 ttgtttccgt ttctgtttcc tttacgccta ttggcaattc actgcctgga cacatacccc
     8401 tataatcaat ttaagggcat tatagatgta cttgcaaaaa tcaaatgcta aaatagtcta
     8461 tgatcgtaga ctattcaaaa actactgcaa ataatactac atgttataaa ttgatcagca
     8521 agatggatag aatatgatga cggagctatg aaaaaaaaag tgtatgtaac aagattgata
     8581 ccagagccag ccctttcaat cttatcaaaa gaatgtgata tagtggttaa taaaaaagca
     8641 agtccaccga cgaaaaaaga gattcttagc aatatacgtg gaatggatgc aattctgtgc
     8701 acgttatcag atacaataga cagagaaatt atggatgcag caggacctaa tctcaaagta
     8761 ataagctcat atagtacagg ctatgatcac atcgatatag aagaggcaaa tagaagagga
     8821 atatatgtcg catacacttc agatatcctc actgaatcca cagccgatct aacatttgcc
     8881 cttattcttt cattagcgcg cagagttgtt gaagcagata aatttgtcag aaaaaaacta
     8941 tggaaatatg gatggatgcc aaaattatat ttaggatcag atgttaacgg aatgacgtta
     9001 ggaatttttg gattaggcaa aattggcagc gccgtggcaa ggcgagctaa aggatttgat
     9061 atgaagatat tatattataa ccgacatcgc ataattaacc aattagatga tccgattgca
     9121 aattacgttg atattaacag acttctaaaa gaaagcgact ttctgtcaat acatgcaaat
     9181 ctaaacaagc atagttttca tttctttaat gaaacaaagt ttagaaaaat gaaaaataca
     9241 gcattcgtaa ttaacacttc acggtggcag atcattgacc agagggcttt aataaaagca
     9301 ttaagaaata gatggattgc aggtgcaggt cttgatgttt atgaaaagga accaatatgc
     9361 tcgtctaatg ctctattgag aatgaacaat gtaataattc taccacatat cggcagcgcc
     9421 acatatcata cccgctctaa aatggccaga gtagctgcgg aaaatatcct caatatatta
     9481 aatggcatag aaccattata tcttgtaaat cctcagatat taaaaaacct tgattaacat
     9541 cttagaaaaa acacgtaagc tattctggca tacagaatca agaataatgt tgcaacatat
     9601 cttttgtaat ttttattaag gaaatatatc aaatatccct attttatgtc ccttaaagtt
     9661 aatgttattg ttttatgaaa ggactttaaa tatcattttc tggcatagtt attcctcgct
     9721 ttaaagatat ctccatacga tcttcatctg taccctttat acaatccgtt gatatgatct
     9781 tggcaggctg aatttttata gtgcccattg ggacgcttcc ttccgattgc ataactctaa
     9841 ttcgttcttc tagtctgtct ctatgatcaa tgcataccat acctatcata tattcttcct
     9901 ttagagatgc tatggaaaca atgtaggagg atggcatatg acaatccttc ccatttactc
     9961 taacggagca atattttggc aataacacaa ttaacttgtt taataatata atataagact
    10021 tgcattttag aactcaatta aatgctcggc atcactataa aattagtttg aatgctgttt
    10081 gtagaccggt agtatactta ttcttcaaat attagtccgt atcagatgta tatgtatata
    10141 tttgaggatc tactgacctt tgttccaaaa tggatcataa atactgttct aatttctaat
    10201 taacttgtga gatatttata tcgattgtac cttaaaatct tgctatgatt gtcccattat
    10261 ctcatagtta tatctacggc aggtaataaa attaagagat atcctaacct aaataatatt
    10321 attgtattgt agatttacca gcatttatta atcgatcgat atccaagttt tagttgaaga
    10381 aatatttcag tgttgtattc atctgtgcta gttttaaaga taatctgata tttattttga
    10441 ggaagcgcca atctcattaa taaatatact tgccatttat agaagagata aaaaatgttg
    10501 acaaaataat caaagccctt ttccgactga aagagtgtac agaaactcta taggtagagc
    10561 aacta
//
LOCUS       DATAAS010000460         1822 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_520505, whole genome shotgun sequence.
ACCESSION   DATAAS010000460 DATAAS010000000
VERSION     DATAAS010000460.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1822)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1822)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1822
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_520505"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..769
                     /locus_tag="VHF08_07430"
     CDS             <1..769
                     /locus_tag="VHF08_07430"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEX2068520.1"
                     /translation="AHELRTPIQPILGLAEVLSSKTGRIEQYNELIDAIIRNAKRLQR
                     LTEDILDVTKIESNSLILNKQQFNLNDMITSAINDIVVKKDFNSENVKILYEPITNNK
                     QDNNNIFVQADRSRLTQVISNLLSNAVKFTKKGTIRVTTQIKEEEEEQQHEQNDDDGG
                     GVSSSSNKVVVISIKDTGSGISPEIFPRLFSKFATSSFEGTGLGLFITKSIVEAHGGK
                     IWAENNTDGKGARFTMSLPILTHSKSIGRALIDNNNK"
     gene            1171..1350
                     /locus_tag="VHF08_07435"
     CDS             1171..1350
                     /locus_tag="VHF08_07435"
                     /inference="COORDINATES: protein motif:HMM:NF011481.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc finger domain-containing protein"
                     /protein_id="HEX2068521.1"
                     /translation="MSKPLQLPVCTSCSRPIMPNDECVKYYCPSCGYVLIWRCESCRE
                     FARVYKCVGCGFEGP"
     gene            1353..1634
                     /locus_tag="VHF08_07440"
     CDS             1353..1634
                     /locus_tag="VHF08_07440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 1-beta"
                     /protein_id="HEX2068522.1"
                     /translation="MTRLLARIRILPADAESNLDMVIQTLKNKVPKDMELKSHIKEPI
                     AFGLNAIIGDFLLEDAEGQMNRLEDAVRNTEGVGEIEVINVSRHSVKIK"
BASE COUNT          672 a          271 c          366 g          513 t
ORIGIN      
        1 agctcatgaa ttgcgtactc ctattcagcc gatacttgga ttggctgaag ttctcagttc
       61 aaaaacagga agaatagagc aatataatga attaatagat gctattatca gaaatgcaaa
      121 aagactgcaa aggcttacag aagatatttt agatgttacc aaaattgaaa gtaattcact
      181 aatactaaac aaacaacaat tcaacctaaa tgatatgata acaagcgcta taaatgatat
      241 agtagtaaag aaagacttta acagtgaaaa tgtaaaaata ttgtatgaac ctattactaa
      301 caacaaacaa gataataata atatttttgt acaagcagat agatctaggt tgactcaagt
      361 tatttctaat ctgctaagta atgctgttaa attcactaaa aaaggaacta ttagagttac
      421 tacacaaatc aaagaagaag aagaagaaca acaacacgag caaaatgatg atgatggtgg
      481 tggtgtcagt agtagtagta ataaggttgt tgttatcagt atcaaagaca caggttctgg
      541 aataagtcca gaaatatttc ctaggttatt ttcaaagttt gctacaagtt cttttgaagg
      601 tactggattg ggattgttta ttaccaaaag tattgttgaa gctcatggtg gcaagatatg
      661 ggctgagaat aatactgatg gaaagggagc tagatttact atgagcctac ctattttgac
      721 tcatagtaaa tctataggga gagcattgat cgataataat aataagtaat aataataact
      781 cgtctaaatg atacgggtat acacatattt tagattatta tcacgtttga caattatacg
      841 tgtattttaa ataataacga cctaggaaat tccttgcgtc aataacaaca ataatcatca
      901 tcttggacac actggagctg gcttcttaaa ttacaatgaa aagcaagatg agcaaaataa
      961 gtaaaggaga aaacaaaaat taaagtgata tattaccaag aagcaattga atttttgtta
     1021 tcttgtataa atgaattata ttaaaaatgg attattgtta tggagataac gaacgcatgc
     1081 tgacataatt aagtataaga gatggaaatt taatacttca aaagcctcaa aaataaactt
     1141 taaattcgga tatttatctt caagctgtat atgtcaaaac cattgcaatt accagtatgt
     1201 acctcttgca gtagacctat catgccaaat gatgaatgtg taaaatatta ttgtcctagc
     1261 tgcggctatg ttctcatttg gagatgtgaa agctgtcggg aatttgctag agtttataaa
     1321 tgcgtaggct gtgggtttga gggtccttag aaatgactcg tctacttgca agaattagaa
     1381 ttcttcctgc cgacgccgaa tcaaatttgg acatggtgat ccagacacta aagaacaagg
     1441 ttcctaagga tatggagtta aagtctcaca taaaagaacc aatcgccttt ggcctgaatg
     1501 ctattattgg agattttctc ctagaagacg cggaaggcca gatgaatcga ttagaggacg
     1561 ctgttagaaa cactgaaggc gtaggcgaaa tcgaagtaat taacgtaagc agacactcgg
     1621 taaaaataaa gtgataagga acaatcgtcg atggcggggg ttgtaaccac aagccgttga
     1681 aaaaatctcg cgggagcatt ggtgaatcct caccaccaat ccgtttaaga gttgctgagg
     1741 caaaacatcg agatgtagga aagcgtcgcg cacggatcga ctctgattct atgcatgatc
     1801 ttggaattga accgggagaa gt
//
LOCUS       DATAAS010000461         2691 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2682834, whole genome shotgun sequence.
ACCESSION   DATAAS010000461 DATAAS010000000
VERSION     DATAAS010000461.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2691)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2691)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2691
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2682834"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            772..2028
                     /gene="ahcY"
                     /locus_tag="VHF08_07445"
     CDS             772..2028
                     /gene="ahcY"
                     /locus_tag="VHF08_07445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HEX2068523.1"
                     /translation="MNYRVKDISLSSEGRKKIEWAEAHMPVLVSMRNKYEKTKPLKGI
                     KIAGCLHVTKETGVLMRTLKMAGAELSWCGCNPLSTQDDVAASLATDEGISVFARRGV
                     STKEYYDDIHSAMDINPHITIDDGADLTIEMHKENNGSRSSVYGGTEETTTGVIRLRA
                     LQKSGKLIYPIIAVNDAETKHDFDNVYGTGQSALDGIVRATNILISGKNVVVAGYGHV
                     GKGIARNASGMGANVIVTEVDPIAALKAKLDGFSVAPMRSASDKGDVFITTTGCKDVI
                     VEEHISKMKDGAILANAGHFNVEISITALESQCVNKKQMNEDTMQYTLKSGNRVYLIG
                     EGRLVNLAAAEGHPSEVMDMSFANQFLSVLRLAESKGTMKPMVYNIDKSQDQEIALAK
                     LESMNISIDKLTEEQKTYLEGFSEGT"
BASE COUNT          950 a          414 c          496 g          831 t
ORIGIN      
        1 ttgttattta aagaaaaaga ctaaccttat aacacctaat aaattgcatc aatatacgaa
       61 acaaaaagta caactttctt tataagatag atgcatcaaa agatcaacgg aacaattaac
      121 ataaattttt tgtgaagtta agattcgcag aaaagaaatc ctatctcccg catctgtgtt
      181 taccactcat attaagaagt accggttgat acaaaacata tacacaaaat tatacgaaag
      241 tattgttttg atcttatcga aattctccgt ctttagtcaa ataaaagata aattatatag
      301 atgtttctac ttataggaac agtgatagat aaagtaggat attctggtca aaaagataga
      361 agtaaataaa agaagattca ggtggtataa agaaaaagag aagaatgcag caagaatttg
      421 ttctgttaaa ttataaaaac cacgacaatc ggcgaggcat tttgtgcaca ttttgtgcat
      481 gatgagatca ctatacacac acgcatttat gctgatttca atatcaagct tcataaggga
      541 atgtggattg ttagctacaa tctatgtttg aatctaaagg gtagacataa aattattcct
      601 tctctcgatt gtatagaatg aacagatagt aatctccttt aagagtgacc gctcaatctc
      661 attattgtga taaatcacgc gttattatgc ttacaacaga taaaaaaatt tctttgatag
      721 atgaagtttc agtgacgata tatatatatg gtaaaattat tgtccagata tatgaattac
      781 cgcgttaaag atatttcctt gtcttcagag ggcagaaaga aaatcgaatg ggcagaagca
      841 catatgcctg tacttgtttc aatgaggaat aaatatgaga agactaaacc gctcaaaggt
      901 attaaaatcg ctgggtgttt acatgtgaca aaggaaacgg gcgtattgat gcgaaccctg
      961 aagatggccg gcgcagagct ctcatggtgt ggatgtaatc cattaagtac ccaagatgat
     1021 gtcgcagctt cgctagctac tgatgaaggc atttcagtat ttgcaagacg aggagtatct
     1081 acaaaagaat actatgacga tatacattca gctatggata tcaatccaca tataacaatt
     1141 gacgatggtg cagacttgac tattgaaatg cataaagaaa ataatggatc tcgatcaagt
     1201 gtgtatggag gtaccgagga aacgaccacc ggtgttatta gactgcgcgc attgcagaag
     1261 tcaggaaaac ttatctatcc aattatcgcg gtcaatgatg ccgaaactaa acatgacttt
     1321 gataatgttt atggtactgg ccaatcagct ttagatggca ttgtccgtgc tacaaacata
     1381 cttatttcag gaaagaatgt tgtcgttgct ggatacggac atgttggaaa aggaattgca
     1441 aggaatgcat caggaatggg agcaaatgtc attgtaaccg aagtagatcc aattgcagcc
     1501 ttaaaagcga agttagatgg attctctgtt gcaccaatgc gatctgcatc tgataaaggt
     1561 gacgtcttca ttacaactac tggttgtaaa gatgtcatcg ttgaagagca tataagtaaa
     1621 atgaaggatg gggctatcct cgcgaatgct ggtcacttta atgtcgaaat atctattact
     1681 gcactagaaa gtcaatgtgt aaataagaag caaatgaatg aagacacaat gcagtatact
     1741 ttaaagagtg gtaacagagt ttatttaatc ggtgaaggcc gcttagtaaa cttagcagct
     1801 gcagaaggtc atccgtccga ggttatggat atgagttttg ccaaccaatt cttatcagta
     1861 ttaaggctag ctgagtctaa aggaactatg aagccaatgg tatataatat agataaaagt
     1921 caggatcaag aaattgctct tgcaaagcta gaatctatga atatatctat tgataaactt
     1981 actgaagagc agaagacata tttagaagga tttagcgaag gaacatagag atttatcatc
     2041 tatagaacaa atatgtaata catactgatc ggatgcggag aatattttga ttcaattctt
     2101 cttttagtta taataagtat gcattatatg agatgaaatc aagtatacgc tctattcact
     2161 tattacaaga tatcttttgg tcacatcaaa tgagcaaact catccataat tttcattttc
     2221 tctttgtaat atgttagata attattagta attcgataat aacttctatt cgtatacttc
     2281 ttcgatatga aggaaggatt tttttattaa gtcaaatcca cagattttac gtcagcgttg
     2341 gatgtgtcta aatgtctttt ctaaattatg ctttaacaaa ctataacaat tcgctaattg
     2401 tcattattca tcatcattaa taataccttc ctcttttaat tattatattt gaaactacgc
     2461 cagttaaaca attagagagc tgatcaaagg acatgatatt attagaaatt caactttact
     2521 cgttgctcac aataatatat ttatttatag gctgaagagg tacacctatg ttaagtgcag
     2581 tattttaatt ttcttcttac actatttttc ttgtataatt ggcaatatta caaaaagaag
     2641 gaaaatatca tcagctattg gttacccagt aaacacatct gctattttta t
//
LOCUS       DATAAS010000462         1771 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2683237, whole genome shotgun sequence.
ACCESSION   DATAAS010000462 DATAAS010000000
VERSION     DATAAS010000462.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1771
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2683237"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            216..347
                     /locus_tag="VHF08_07450"
     CDS             216..347
                     /locus_tag="VHF08_07450"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068524.1"
                     /translation="MTILGTSGPVAAFTQAAKEQEEEEEQQQVQDQQEQGDNPPNPT"
     gene            complement(433..840)
                     /locus_tag="VHF08_07455"
     CDS             complement(433..840)
                     /locus_tag="VHF08_07455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068525.1"
                     /translation="MIAAIAAIITDAIVVQYAAQSITNNVLVSIFSIITDIGVYIIAF
                     TGLFYIDNRKKYIDVVTGKRGSNRFRQDAKKIVTALGVSEVIYMIGKFTSIYLLLQSN
                     VAPPYQVAMLSTLLAGGFSTVTANLMIKAQKLF"
     gene            complement(911..1168)
                     /locus_tag="VHF08_07460"
     CDS             complement(911..1168)
                     /locus_tag="VHF08_07460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068526.1"
                     /translation="MTLTSSVSSTIQKEGIIINEDPLLDHKLDLITAGARPYLKDHLL
                     NKISRDNCSVIINYILARLIFMFSKRYDGGLLKPSPYHTKE"
     gene            1278..>1771
                     /locus_tag="VHF08_07465"
     CDS             1278..>1771
                     /locus_tag="VHF08_07465"
                     /inference="COORDINATES: protein motif:HMM:NF012451.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaJ domain-containing protein"
                     /protein_id="HEX2068527.1"
                     /translation="MTDSKGYYAALGVSEKASYKQIKYAYRRLARKYHPDRNNSVYAE
                     EMIKKINTAFEVLSDETKRAQYDKREFDNSFGTAQSKHEQVHTIPKSRKMANESEVVD
                     IFNGQYLPDIPRGRFHIIVEPSLCMAFGSCEVLAPKVFVVEKNKMVNPKAKVECETCA
                     DYES"
BASE COUNT          579 a          298 c          340 g          554 t
ORIGIN      
        1 ctgttattaa agttaattct attatttgaa actagataat tttatttaat gttacacctt
       61 tgtaagatct atattgttta tcattcttct ttttgctttt cgatcactgt ttttaagagc
      121 caaagcctaa tgaatttctt ataaagtatg tattttacac ataataatac tcgatgataa
      181 caactccacg attgactatt ttaatgatgg ttgcaatgac tatactgggt acaagtggtc
      241 cagttgcagc atttacacaa gcagccaagg aacaagaaga agaagaggaa caacaacagg
      301 tgcaagatca acaagaacaa ggggataatc cgcctaaccc aacataacct tcttttctct
      361 catcagggct tttttagcag taaatcaatc agccaatcca gttatctatc atatcataag
      421 tagtagctct ttttagaata gcttttgtgc ctttatcatc aagtttgctg taacggtaga
      481 gaatcctcct gccagaagag ttgaaagcat tgcaacttga tatggtgggg ctacatttga
      541 ttgtaataat aggtagatag atgtgaattt gcctatcatg tatatcactt cagatacgcc
      601 taaagcggtc actattttct ttgcatcttg tctaaaccta tttgaacctc tcttacctgt
      661 aactacgtcg atatacttct ttctattatc gatataaaaa agacctgtaa aagcaataat
      721 atatactcct atatctgtaa tgatagaaaa aatagaaaca agaacgttat tggtaatact
      781 ttgtgcagca tactgaacaa ctatcgcatc tgtaattatt gcagctatag ctgctatcat
      841 gatatttttg ttgaaaaaga taagttctcg gtatctggtg tagaattgct tgaatgaatg
      901 ttgcagtcgt ctattctttt gtgtggtatg gggacggttt aagaagtcca ccatcatatc
      961 gtttggaaaa catgaatatt aatctagcta atatataatt aatgataact gaacagttat
     1021 ctcgtgatat cttgtttaat agatggtctt tgagataggg tctagctcct gctgttatta
     1081 ggtctaattt gtggtcaaga agagggtctt cattaataat tatgccttcc ttctgaatag
     1141 ttgaggagac tgatgaagtt aaggtcatct gttagtatca ttttaaataa atgaacgaac
     1201 tgccatataa gacacaatgt tattccatct tattttagaa tgatataata aatgagttaa
     1261 ctcacaattg tctattcttg acagacagca aaggctacta cgcagctctt ggagtttcgg
     1321 agaaagccag ctacaaacag atcaagtacg cctataggcg gcttgcccga aaataccatc
     1381 cggatagaaa taactcagtt tatgctgaag aaatgataaa aaagataaac actgcgtttg
     1441 aagttctgtc agatgaaaca aagagggcgc aatacgacaa gagggaattt gacaattcgt
     1501 ttgggacggc acagtcaaaa cacgagcaag tacacacaat tcctaagtca cggaaaatgg
     1561 caaatgaaag tgaggttgta gacattttca atgggcaata tttgcctgat ataccaaggg
     1621 gcagattcca cataattgtt gaaccttcgc tatgtatggc atttgggagt tgcgaggttc
     1681 ttgcgccaaa agtttttgta gtggaaaaga acaaaatggt caatccgaag gcaaaggtcg
     1741 agtgcgaaac ctgtgccgac tatgaaagca t
//
LOCUS       DATAAS010000463         3543 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2684071, whole genome shotgun sequence.
ACCESSION   DATAAS010000463 DATAAS010000000
VERSION     DATAAS010000463.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3543)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3543)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3543
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2684071"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..338
                     /locus_tag="VHF08_07470"
     CDS             <1..338
                     /locus_tag="VHF08_07470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068528.1"
                     /translation="VILLEGRSSNNITLDQFTKIQYDNFRYLFSDFDFKLENKTAVIV
                     GDNRAGKFEYSIVNPYSDGIRNGMIIWIIRGDTVYMISYVAEQVQYSMYLPTIEKLID
                     SIEFTNNTG"
     gene            495..767
                     /locus_tag="VHF08_07475"
     CDS             495..767
                     /locus_tag="VHF08_07475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068529.1"
                     /translation="MISRICVYIIFTEVLLAAATVNMVVIPASSSQLTARDFEEVRDN
                     LVEVRLALQKGDLIEALQHLNNADEQLLLLAANATASTTDTNSTIS"
     gene            1013..1660
                     /locus_tag="VHF08_07480"
     CDS             1013..1660
                     /locus_tag="VHF08_07480"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068530.1"
                     /translation="MNTTQVKKVTECFVLILTTGIILTFIAISVNEAVGQETSSNRQL
                     NVIFDSIKINNDHDPLFPGEWKIDSYVNGQRTQLWMGSELNRVSTGETVIFREKNINV
                     TIPENGTLRIVTVGAEFDIDLDDPLPNISGILDKDLPFLDYSDKAKDSIESIINFDRN
                     DAIGIIAKEYSAENNFGIGSYDECSESIDEAGDLYDAVDTSCDFRLRYTIKEKAD"
     gene            1822..2685
                     /locus_tag="VHF08_07485"
     CDS             1822..2685
                     /locus_tag="VHF08_07485"
                     /inference="COORDINATES: protein motif:HMM:NF018378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glucuronyl C5-epimerase family protein"
                     /protein_id="HEX2068531.1"
                     /translation="MNNRTFTLLNGLIIFLILSFPAVVCLPFIASAMLVPDDKGVMME
                     NYNGVQRKVYNPLSVAIGGMEYYLEYKNHGDKESKQYFINTADWLVNNANDKGEYSLW
                     EYNFPWRFYGWISPPYSSALAQAQGLNVLLAAYDLTKNEKYLIEANNALGAFLVDYEN
                     GGVVSNEDGDSLFLHLLAKPGFQKIYVLNGHTWSLLLLWNYYQQTQDPAVKAIFDKGI
                     KWLRENLWKYDTGSWSNYDQMENLSLPEYHILHITQLANLYEITGEQIFKEYSDRFDR
                     YNRNIPLDITS"
     gene            complement(3080..>3543)
                     /locus_tag="VHF08_07490"
     CDS             complement(3080..>3543)
                     /locus_tag="VHF08_07490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068532.1"
                     /translation="CQQEILEIIAKGNNIEEVRALIPKVRDSCFQKYSQLLKERKVPF
                     KELVFTKRLSQNSNEYQINRNTIENDAIQQLSIEGKSLKAGQILKYVITDYYNRRKKH
                     SKNNRRTIPIELINEKTTTITAYDVRKYTELLAETCNSVTEPFGYTFSIYI"
BASE COUNT         1234 a          521 c          606 g         1182 t
ORIGIN      
        1 atgttatatt attagaaggc aggtcttcta ataatataac attagaccaa ttcactaaaa
       61 tacaatatga caactttcga tatttattct cagattttga tttcaaatta gaaaataaaa
      121 ctgcagttat tgtaggagat aaccgggcag ggaaatttga atattctatc gtaaatccat
      181 attctgatgg aataagaaat ggaatgataa tttggataat tagaggagac actgtatata
      241 tgatttcata tgttgcagag caggttcaat actctatgta tttaccaaca atagaaaagt
      301 tgatcgactc aattgaattt acaaacaaca caggttgaat gatcgtatta tataacatat
      361 aaacaatgat aatgaaactt tctttataaa tcggacaacg ctcttgtttc cttccttaat
      421 tttacaaaat atatatagat actactgagc tgacttcagc attacttata aaacataatg
      481 acaggcatat tagtatgata tctagaattt gtgtctacat tatatttaca gaggttctac
      541 ttgcagcagc aactgtaaac atggttgtca tacctgcgtc ctcgtctcag ttgactgcta
      601 gggactttga agaagtaaga gacaatttag ttgaagtacg tttagcttta cagaaaggtg
      661 atttaataga agctcttcaa cacttaaaca atgctgatga gcaattattg ctacttgcag
      721 caaatgcaac agcatctact actgatacta attctacaat ttcttagtaa atgataaaaa
      781 ttacctgaca gaaattatga ttatatacat atagggaata ggattagaaa aataaattta
      841 aagtgtgttc atattaatga gttagatcct acattacact aaaatttcga aacgtatcaa
      901 gcttttctat tgttaaaaat taatcaatta atatgatgca tctatttttt tcgcttaaag
      961 aggaaagatt aaaaacctga taatatcttg gctattggaa ttgggactta acatgaatac
     1021 aactcaggta aagaaagtga ctgaatgttt tgtattaatt ttaacaacag gtataatttt
     1081 gacctttatc gccatttctg tgaatgaagc agttggacaa gaaacctcta gcaaccgtca
     1141 attaaatgtg atctttgatt ctatcaagat taataacgat catgaccccc tttttcctgg
     1201 ggaatggaag attgattcat atgtaaacgg tcaaaggaca cagctctgga tgggatctga
     1261 attgaacaga gttagtacag gtgaaaccgt aatttttaga gaaaaaaata tcaatgtaac
     1321 aattccagaa aacggaacat taagaattgt gactgtagga gccgagtttg acatagatct
     1381 tgatgacccc ttaccaaata tttctggtat tttggataag gatcttccat ttttagatta
     1441 ttcagataaa gcaaaggatt ctatagagtc tatcataaac tttgacagaa acgatgcaat
     1501 tggtattatt gcaaaagaat atagtgctga gaataatttt gggataggta gttatgatga
     1561 gtgttcagag tcaatagatg aagcaggcga cctgtatgat gcagtggata caagctgtga
     1621 tttcaggcta cgatatacaa taaaagaaaa ggctgattaa ataagaaata tgatatagct
     1681 tatgatgtat atctattctg tgtaaaaaat aataatgtac tatcatttat tcctcaaaaa
     1741 cactatactc attcaagata agaataaatc atttgccagt actctaaata tcacctttat
     1801 tcatatttca tatctataga tatgaacaat agaactttta cacttctaaa tggtttgata
     1861 atatttttga tattgtcttt tccagcagtt gtgtgtctcc cttttattgc atccgcaatg
     1921 cttgttcctg atgataaagg agttatgatg gaaaattaca atggtgttca acgtaaggta
     1981 tacaatcctt tatctgtagc aattggagga atggaatact atttagaata taagaatcat
     2041 ggcgacaaag aatccaaaca atatttcatt aacactgccg attggcttgt taataatgcg
     2101 aatgacaagg gcgaatattc gctctgggaa tataattttc cttggagatt ctatggatgg
     2161 atatctcctc cgtattcatc tgcattagca caagcacaag ggctgaatgt tcttttagct
     2221 gcatatgatt tgactaaaaa tgaaaaatat ttaattgagg caaataatgc cttaggtgca
     2281 ttcttagtcg attatgagaa tggaggagta gtaagcaatg aagatggtga ctctttattt
     2341 ttacatcttc tggcaaaacc aggttttcaa aaaatatatg ttttgaatgg tcatacttgg
     2401 tcactgctat tactttggaa ttactatcaa cagacccaag atcctgctgt gaaagccata
     2461 tttgataaag gaataaaatg gttgagagag aacttatgga aatacgacac aggaagttgg
     2521 tcgaattatg accagatgga gaatttatcc ttacctgaat accatatatt acatatcact
     2581 cagttggcaa atctatatga aattactggc gaacagatat tcaaggagta tagcgataga
     2641 tttgacagat ataatagaaa catacctctg gatatcactt cttagagaga ctaagaattg
     2701 atgcaatagt agatctggat tcgataacca ggatataaca taagcaataa tgggaatgtt
     2761 aaaaagatga atttggttat tattataaag gaaaatcaga taatgatgga gatatatata
     2821 tgggaatatt agaatgctac atcccatttg caaacagctc aaacaataat cgactcattc
     2881 acataataag caatcaataa ataaacaaga ctatgacaac cgagacatcg agcagtttat
     2941 gaaagcattt ttcatcaaaa aatatgatat ggatttggaa tagatctcca tacacagccc
     3001 catgatccga tggactagat tttctaactt ggttgcttag aactatgcta tatggctgaa
     3061 gaattggtta tctatgtctc tatatatata tactaaaagt atagccaaat ggttcagtaa
     3121 ctgaattgca agtttctgca agcaattcag tgtattttct tacatcataa gcggtgatag
     3181 tagtagtttt ttcattgatt aattctatag gtatagttct tctgttattt tttgaatgtt
     3241 tcttccttct gttataataa tcagttatga catattttaa aatctgtcca gctttgagac
     3301 ttttaccttc aatactcagc tgctgtattg catcattctc tatagtattt ctgtttattt
     3361 gatattcatt tgaattctgt gaaagtctct tcgtaaatac tagttcttta aatggaactt
     3421 ttctttcttt tagaagctga gaatattttt gaaaacaact atctctgact tttggtatca
     3481 aagctctcac ctcttcgata ttgttccctt tagcaattat ttctagaatt tcttgctgac
     3541 att
//
LOCUS       DATAAS010000464         2263 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5375995, whole genome shotgun sequence.
ACCESSION   DATAAS010000464 DATAAS010000000
VERSION     DATAAS010000464.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2263)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2263)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2263
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5375995"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..302
                     /locus_tag="VHF08_07495"
     CDS             <1..302
                     /locus_tag="VHF08_07495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068533.1"
                     /translation="KILSENIGEVADFPQIAASESNLYVVWSDLFIRTYPGMFEILFT
                     FSKDEGRNFSQAVNLSSNQGSSVSPRIAASEDYAYIVWSDTTTGNGDIYFRSVSE"
     gene            complement(952..1920)
                     /locus_tag="VHF08_07500"
     CDS             complement(952..1920)
                     /locus_tag="VHF08_07500"
                     /inference="COORDINATES: protein motif:HMM:NF012703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="arginase family protein"
                     /protein_id="HEX2068534.1"
                     /translation="MKTALDLLEPFFIIPEKTKAGYSFADIPVKVTFNESNVVFYGVP
                     LDITTSFNKGTSRGPEAIRLTSARQIETFLLDEKIDIYERAKIYDLGDLRIPLKTKKR
                     NEDHIISSLKYLNKTIPVITDRLVRSNKLPVIMGGEQTVTYYSLRQLSNIKPIVIHFD
                     AHRDMKPEYNGMKMCHTTPFYHLMKEGYIPGVNIIQIGIRQTDKHENKIAEENGVVTF
                     DAWEIHRDIDNVSNYLRSATLNKNLYISFDIDVYDIPYVPCTGTPEPFGLNPFEILKI
                     IKSLDKSSKLVGMDIVEVGLKNIDYREGTLATQTLFRILSHNCIIR"
BASE COUNT          726 a          360 c          350 g          827 t
ORIGIN      
        1 caaaaatatt aagcgaaaat attggcgaag tagcagactt tccacaaatt gctgcatcag
       61 aaagtaattt gtacgtcgta tggagtgatc tctttatacg cacatatcca ggaatgttcg
      121 aaattctctt tacatttagt aaagacgaag ggagaaattt cagtcaagcc gttaatttaa
      181 gtagcaacca aggaagttct gtctcacctc gtattgcagc atctgaagat tatgcatata
      241 ttgtatggag cgatactaca acaggaaatg gtgacatata tttcagatca gtgtctgagt
      301 aataatttcg tacttactac gcttattact tccgcctagg tttactattt tcatcttttt
      361 ggctatattc atttaacatc gcagtgagta atcattcgtt atgcatatca atgtataatt
      421 aaatgaattg gaaatatgtt ttagtttgca gctcctttct ttctacatgg aaatagtcat
      481 caaaactttc agttctgtct ttaacatact aaatggttcc tttaattaca ttttctcata
      541 tggcaaatga ataatatata ttgtttttag tttgaggaat tacaagcttg gggatatacc
      601 attgtatcac caaaaatggt agatacagaa tgtttcctac tttcttaatg ctaatggcta
      661 tatatatata tactctgcaa aaagcatata cttctttcgt atatgtatac tccttacata
      721 tggagataaa tgctaggata tcttttttct agggatagac gtgaagaaga gtacaaaagt
      781 ataatgtaaa gaagatatac tttggagaaa atgttctgtt tcttaagagc atagaagaga
      841 agtttatatt ttcagctata ggtttaacgt caagtaaaca gaactcttct ttttcttatt
      901 attgtagaga cttttttgag ttcgatgttc ggatagcata tagactttcc gttaacgaat
      961 aatacaatta tgtgagagta ttctaaataa tgtttgtgtc gcaagtgttc cctcccgata
     1021 atcgatgttt tttagaccta cttcgacaat atccataccg acaagtttag aggatttatc
     1081 taaacttttt ataattttta gaatttcaaa aggattcaac ccaaatggtt ctggggtgcc
     1141 agtgcatggc acatatggaa tgtcatagac atctatgtca aatgatatgt atagattctt
     1201 gtttaaagtt gctgatctaa gataatttga tacattatca atatctctat gtatttccca
     1261 agcatcaaaa gttacaactc cattttcttc tgctatctta ttttcgtgct tatcagtttg
     1321 ccttattcca atttggataa tattgactcc tggaatatat ccttctttca ttaaatgata
     1381 gaaaggagtc gtatgacaca tcttcatacc attgtattca ggtttcatat ctctatgagc
     1441 atcaaagtga attacgatgg gttttatatt tgacaattgc ctgagagaat aatacgtcac
     1501 agtctgttct ccacccatga ttacaggtaa tttgttcgac ctaactaacc tatcagttat
     1561 tacaggaatt gtcttattta ggtacttgag agagctaata atatgatctt catttctttt
     1621 tttagtttta agaggaattc ttaaatctcc aaggtcatat attttggccc tttcatagat
     1681 atctattttt tcatctaaga gaaatgtttc aatctgacga gcagaagtta gcctaatcgc
     1741 ctctggccct cttgaagttc ctttattaaa actagttgta atatctaatg gtacaccata
     1801 gaacacaaca tttgactcat tgaatgtcac cttgacagga atatctgcaa aactatatcc
     1861 agcctttgtt ttttcaggaa tgataaaaaa tggttcaagt aagtctagag cagtcttcaa
     1921 tgataactac aaaattcaaa gctttaaatg catttcttct tctcttacca aatgttattc
     1981 attaactgac ttggcatcca atcttgaatt aaagtctatt atctcaaata tatgaaggaa
     2041 attattttga ttttaaagaa tattaagata gttaccgtaa gttacataat aacaaatctt
     2101 tgcaatttca taactagaat taatactcaa atacatatga ctttttttgt ttcggtcttg
     2161 aatccattga tcattcattc attcatttat ttattcattg aaaaaatcca gaatgaacta
     2221 atttcaatta ataaaaatag gttgaatgta tttacgtttg ttg
//
LOCUS       DATAAS010000465         1581 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5376732, whole genome shotgun sequence.
ACCESSION   DATAAS010000465 DATAAS010000000
VERSION     DATAAS010000465.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1581)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1581)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1581
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5376732"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1317
                     /locus_tag="VHF08_07505"
     CDS             <1..1317
                     /locus_tag="VHF08_07505"
                     /inference="COORDINATES: protein motif:HMM:NF012722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEX2068535.1"
                     /translation="EITKDNIQYCKELMRIVKDLRHSDQIEANFGLNEIEYLGSVGLQ
                     EEQLQATYCNIKEVVEKQHYIFDSLWNKSTSADEKIREIEEGVESEFYEVITDNQKAK
                     NVYIDLAKSIEKEALLLFANSQAVLRSDRLGIIDYLIGASAKRRGSMKGPTIRIICPL
                     TAENSHIINKIKENAPDIKIQNSSSSHSGLFIVDRSKFMRFELKEPRSEEFSEAIGFV
                     VYSNSKVGVDSSKAFFELLWNENIQYEKLREYERLKEIQKIKDEFINVAAHELRTPVQ
                     PILGLSELVRSKLKVEDRELIQFLDIINRNAKRLQRLTEDILDVTKIESQSLKLDKEK
                     FNINKKILYIIKDVERQIPDSNKLKILFVEPREAILVNADKVRIYQVIANLLNNSIKF
                     TKEGTISVSVKVTQKNGGNKEEGRDYGSNSSSSSRHVIVSVKDSGA"
     gene            1330..1497
                     /locus_tag="VHF08_07510"
     CDS             1330..1497
                     /locus_tag="VHF08_07510"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2068536.1"
                     /translation="MLPRLFTKFATKSDKGTGLGLFISKSIIEAHGGKIWAENNPDGK
                     GATFAFSLPID"
BASE COUNT          629 a          209 c          302 g          441 t
ORIGIN      
        1 gaaattacaa aagacaatat tcaatattgt aaagagctaa tgcgaatagt taaagatctt
       61 cgccactcag atcaaattga agctaacttt ggattaaatg agatagaata tttaggatct
      121 gtgggtttgc aagaagaaca attacaagct acttattgta atataaagga agtggtagaa
      181 aagcagcact atatttttga tagcctttgg aataaatcaa caagtgcaga cgaaaaaata
      241 agagaaattg aagaaggcgt agaatcagaa ttttatgaag ttattactga taatcaaaaa
      301 gcaaagaatg tctatattga ccttgcaaaa tcgatagaga aggaagctct actactcttt
      361 gctaatagcc aagccgtact tagatcagac aggctaggaa ttattgatta tctaatagga
      421 gcatcggcca aaagaagagg gtcaatgaaa ggtccaacaa tcagaattat ctgtccatta
      481 actgcagaga attcacatat aataaataaa ataaaagaga atgcacctga tattaaaatt
      541 caaaacagca gcagttccca ttctggactg tttatagttg atagatcaaa gtttatgaga
      601 tttgagctta aagaaccacg atctgaagag ttttcagaag ctataggatt tgttgtatac
      661 tcaaacagca aagttggtgt agattcttcc aaggcatttt tcgaattgct ttggaatgag
      721 aatattcaat atgaaaaatt aagagaatat gaaagactaa aagaaataca aaagataaaa
      781 gatgaattta ttaatgtggc tgcacacgaa ttgcgaactc ctgtacaacc aatacttggc
      841 ttgtctgaac ttgttcgttc caagctaaaa gtggaagata gagaattgat ccaattttta
      901 gatattatca atagaaatgc aaaaaggcta cagcgactta cagaagatat acttgatgtt
      961 acaaaaattg aaagtcaatc attaaagcta gacaaagaaa aattcaatat aaacaaaaaa
     1021 atattatata ttataaaaga tgtagaaagg caaatccctg attctaataa attaaaaata
     1081 ttatttgtag aaccaaggga ggctatactc gtaaatgcag ataaagtaag aatataccag
     1141 gttattgcaa atctactaaa taattctata aaattcacta aagagggaac tatatcggtg
     1201 tctgtaaaag tgacacagaa gaatggtggg aataaagaag aaggaagaga ttatggtagt
     1261 aatagtagta gtagctctag acacgtcata gtgagtgtga aagatagtgg agcatgaata
     1321 gatcctgaga ttttgccaag gctatttaca aagtttgcta caaaatctga taaaggtact
     1381 ggattagggt tgtttatttc aaaaagcatt attgaagccc atggcgggaa aatatgggca
     1441 gaaaataacc ctgatggaaa aggcgccaca tttgcattta gtctaccgat cgattaatga
     1501 ataaaagaaa ttctccaata tttgtaaaat gatgtaatat gtattctggg ataattattt
     1561 cgcctagtct tcagtctttc t
//
LOCUS       DATAAS010000466         1852 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_527263, whole genome shotgun sequence.
ACCESSION   DATAAS010000466 DATAAS010000000
VERSION     DATAAS010000466.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1852)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1852)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1852
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_527263"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..652
                     /locus_tag="VHF08_07515"
     CDS             <1..652
                     /locus_tag="VHF08_07515"
                     /inference="COORDINATES: protein motif:HMM:NF012730.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005216 - monoatomic ion channel activity
                     [Evidence IEA];
                     GO_process: GO:0034220 - monoatomic ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="ion transporter"
                     /protein_id="HEX2068537.1"
                     /translation="VEAVLRLIALYPTPQRYFKDAWNCFDFTIIILSLLPTAGQFSTI
                     ARLVRLLRITRLITKSTELRAIVSTLVRSIPSIFNILILLSILFFIYAIVGYHLFRNA
                     DPQHWSSFPTSLTTLFQIITLEGWVNVMEPIVTNLGPLYWLYFVSFIVIGTFIIINLF
                     ISVIVRKSEEAYQHVQRESGIPLTQKEIVQEIKEIRRILEELEKRIGEDTRGTNAS"
     gene            1388..>1852
                     /locus_tag="VHF08_07520"
     CDS             1388..>1852
                     /locus_tag="VHF08_07520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068538.1"
                     /translation="MLRSLINGNSNDVLKQLRQAEYGAHYIIVYYDMMTLRQLYTGYI
                     KTQLEYNNELVLILPYYETTETVRSILSENHSSNEGNIIDVRKYEKEGSLIIIDSAEA
                     YFTSDNNLMSFVEKLAKQVQTSGRNGISVIADLASFYYFNRIDKLIEYEMSLP"
BASE COUNT          658 a          290 c          322 g          582 t
ORIGIN      
        1 cgtagaggct gtattgaggc tgattgcatt atatccaacg ccacaaaggt atttcaaaga
       61 cgcttggaat tgcttcgatt ttacaatcat aattctgtcc cttttgccga ctgcaggtca
      121 gttttcaacg atagcgaggc tggtgagact gctaagaata acgagactaa taacaaaatc
      181 tacggaactg cgcgcaattg tatctacgct tgtccgctca atacccagca tatttaacat
      241 tttgattctg ctttcaattc tctttttcat atacgcaata gttggatatc atcttttcag
      301 aaacgctgat ccacaacatt ggtcatcttt tccgacctca ttgacaacgt tatttcaaat
      361 catcacgttg gaaggatggg tgaatgtaat ggaaccgata gtaaccaatc tagggcctct
      421 atattggtta tattttgtaa gctttattgt aattggaact ttcataatca tcaatttgtt
      481 tatctctgtg attgtcagaa aatctgaaga ggcatatcaa cacgtacagc gagaatcagg
      541 aataccttta actcaaaagg agatcgtgca ggagataaaa gagatccgca gaatcttaga
      601 agagctggag aaaagaattg gcgaagatac gagaggtacc aatgcaagct aacttgaact
      661 tttgtaattc tatgatattt gagatgatct cccaatgcct actcgctgta tcccacaata
      721 tcaacatatg ggtgaaagtt tgtttatgtg tactacaaca tcatcaatgg atgagcgtgt
      781 ttgtgatttt acgacagtta ttaaaaattg tgtagccatt gagtcattta ataatttatt
      841 gaattttcag attaggattc aaattattat taaagtgcaa aaatacaatt aggaatcaca
      901 ttgtagaatt aacaaagatg attgcatagt tatgacaagg cataagaatg taataacaga
      961 gtatttttgt cctaaagaag gaatgtagta gtcgtaaata ttccccatta ttaatgtatg
     1021 tgtgatggct ataagaagcg aatggatctt tgcaatgcaa ggatgaatga tatagaaaca
     1081 ccatatgaaa atcattctat aaatagataa gatctacttt atgagtttat acaaatcaaa
     1141 ccagaagtaa gatctgctaa tgacatcatc tcatattaat atgaatatct tctcagaaga
     1201 gttactggct gctaagataa ttggcttatc caaaagcaat atccaataat gaattgaata
     1261 gtataacagg aaataatgta ttgacataac taatcaaaag taataaaaga aagtctgctt
     1321 gaaagttact tttgttaagc acatataaca ttaaaatcct atcaactaca ttatttagct
     1381 atagcttatg cttagaagtc tcataaatgg taatagtaat gatgttctaa aacaattaag
     1441 acaggcagaa tatggtgctc attatattat cgtctattat gatatgatga ctctaagaca
     1501 actttataca ggttatatta aaactcaact tgaatataac aatgagcttg ttctaatcct
     1561 tccatattat gaaactaccg agacagtcag aagtatattg tcagagaatc atagtagtaa
     1621 tgaaggcaat atcattgatg taagaaaata tgaaaaagaa ggctctctta tcatcataga
     1681 ttctgcagaa gcatatttta cttcagataa caatttaatg tcatttgtag aaaagttagc
     1741 aaaacaggtt caaacctctg gtagaaacgg aatatctgta atagctgact tggcctcatt
     1801 ctattacttt aatcgaattg ataaacttat agaatatgaa atgtcactac ca
//
LOCUS       DATAAS010000467         4406 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_531105, whole genome shotgun sequence.
ACCESSION   DATAAS010000467 DATAAS010000000
VERSION     DATAAS010000467.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4406)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4406)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4406
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_531105"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            155..799
                     /locus_tag="VHF08_07525"
     CDS             155..799
                     /locus_tag="VHF08_07525"
                     /inference="COORDINATES: protein motif:HMM:NF024997.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HEX2068539.1"
                     /translation="MNPTSFMHIFKRNRTSAKYICYGLYLYFLGLSFRNTSKALSPFV
                     ERSHVSIWKWLQHYNPQKIYCKRKRISEFIIDETLIQIGKDYFWLWVAIEPSNKEVLG
                     IHLSLERNMIVAEQFLKHLVIKYGKHKVSSDGGTWYPQACKFLKLKHHIHSSFEKSVI
                     ERMIQYFKDRTESFDDYFPCTKKKKCKLYHVINWLTMFADIHNKLIQNEIMFLS"
     gene            complement(1206..1877)
                     /locus_tag="VHF08_07530"
     CDS             complement(1206..1877)
                     /locus_tag="VHF08_07530"
                     /inference="COORDINATES: protein motif:HMM:NF015324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0007034 - vacuolar transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Snf7 family protein"
                     /protein_id="HEX2068540.1"
                     /translation="MTTGFSSNWINKNRISTTERIKESVRTQKPLKSKIEFAKNSLQA
                     QNQKMDAMLEKLRGKEKTYFNQVIASVQKHDVQQGKMLSNELAQIRKTAKTISQLKIT
                     LEQIQMRLESTLDIGDVMVSIGPAMGALTKVKSGLSSVMPEVDTELGEINGVFRDIMM
                     NAGNMSNNSFTFDASGEDVDRILAEAGAVAESRVNANFPDIPMGSFSSNGSSGGSRTS
                     IDEHS"
     gene            complement(2209..2709)
                     /locus_tag="VHF08_07535"
     CDS             complement(2209..2709)
                     /locus_tag="VHF08_07535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068541.1"
                     /translation="MVNSIKWAVNSKDIITIDPHINWLVISRDMVGDDHLHIEEDDQI
                     ANSLVKSMRAATEGVIKIDIKDQSAVQINLNNDSIMVDLLQPEFFRISEELGLFDKLK
                     TAKEFSQKLTDNGLTISFLRKGKEAISLGKDAKPTLSRLLTRSGDIQIDSIKELANLK
                     RDLEEE"
     gene            complement(3068..4264)
                     /locus_tag="VHF08_07540"
     CDS             complement(3068..4264)
                     /locus_tag="VHF08_07540"
                     /inference="COORDINATES: protein motif:HMM:NF012318.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like peptidase domain-containing
                     protein"
                     /protein_id="HEX2068542.1"
                     /translation="MLHRSKLKIVLSIIFVFTTMNVLLISQNPVMAQQQQQQQNFTGV
                     DVIPTKDNESSLSLNSIFKEVENSVVQITRKVPPSNILPSPESENATTLGSGFVYDNK
                     GRIITNNHVVGDAKIVDITLVDGNRYTANVIGTDIFSDIAVIEIVENLTEQSSPPLNP
                     LIIGNSSELEVGEQVIAIGNPFGLAGTMTTGIISNAERLLPIGGLGFSIPNAIQTDAL
                     INPGNSGGPLLNMNGQVIGMNTAGLFGSGIGFAIPSNTITRIVPALIEKGNYTHPWLG
                     LTAATLTSDLAESVEGLERNFKGVLVDSIVKDGPADKAGVNGSITDQYGEKHGGDIIT
                     AVDGHNVIQIEDFISYLEEQKKVGDRITLTIYRNGQFLDLEMTIEERPSPLLYLTEMP
                     SPVPPP"
BASE COUNT         1411 a          745 c          650 g         1600 t
ORIGIN      
        1 attcttgttt caaatactct attgatacca agtaaattat aataaagtta ttaaaagata
       61 caagtacgca aattaatcga ttattgctgt aatctcattc actctattat ccatcagacg
      121 ggctctgtta acttagcgat aaatctatag ctggatgaat cctacttctt ttatgcatat
      181 atttaaaaga aacagaacgt ctgcaaagta tatctgctat gggttatact tatatttttt
      241 aggattatct tttagaaata catccaaagc tttatctcca tttgttgaaa gaagtcatgt
      301 ttcaatttgg aagtggttac agcattataa tccacaaaaa atatactgta aaagaaaaag
      361 gatttctgaa tttatcattg atgaaacctt aattcaaata ggcaaagatt atttctggtt
      421 atgggttgct atagaaccgt ccaataagga agttttagga attcaccttt cattggaaag
      481 aaatatgatt gtagccgaac agtttctgaa gcatttagta ataaaatatg gaaaacataa
      541 agtgtcatca gatggtggta catggtatcc acaagcctgc aaatttctga aattaaaaca
      601 tcatatacat tcttcatttg aaaaaagtgt catagaaaga atgatacaat attttaagga
      661 taggactgaa agttttgatg attactttcc atgtactaag aagaaaaagt gcaaattata
      721 tcatgttata aattggttga ccatgtttgc ggatattcat aataaactta ttcaaaatga
      781 gataatgttc ttaagttaac agagccccaa gagttaatgg atttgactac tttatagata
      841 aaagaaaaat ttgatatgat aagtatgtcc atataaaatg ttccaatgtt aaagcttttt
      901 aatcgtctag aaactttaga cactattaat cagggatgag aaaataatat tatagttttt
      961 aactactttc tagagagcac acatacacat atacactttt tttatcctca aactttgcta
     1021 taaagaaatt atggcaactc taattaacat acactaataa ttaatcgagt agacccccta
     1081 gcagctccac gtttgaaaag tccttaaata acgaaaggag gttatagagc gacgagcctg
     1141 tattatgttg ttatttatgg gatagtaatg cgactaacca attctgtggt tagtatttga
     1201 ttttattagg aatgttcatc tattgaagtt ctagaaccgc cactactacc attactacta
     1261 aaggatccca ttggtatgtc aggaaagttc gcattcaccc tagattctgc aactgcccct
     1321 gcttcagcca aaattctatc aacgtcttca ccgctggcat caaatgtaaa agaattatta
     1381 ctcatgtttc ctgcattcat cataatatct ctaaacactc cattgatttc gcctaattca
     1441 gtatctacct ctggcattac agatgacaat ccggatttta cctttgtcaa tgctcccatt
     1501 gctggtccga ttgacaccat cacgtctcca atgtcaagtg ttgattctag tctcatttgt
     1561 atctgttcaa gtgtgatctt caattgtgaa atagtcttgg ctgtttttcg aatctgtgct
     1621 aattcatttg ataacatctt accttgctgt acatcatgtt tttgaacaga tgctataact
     1681 tggttaaagt aagttttttc ttttcctctt aatttctcca acatggcatc cattttctga
     1741 ttttgtgctt gaagactatt ctttgcaaat tcaatctttg atttcagagg cttctgtgtc
     1801 cttacacttt ctttaattct ttcagtcgta gatattctgt ttttattgat ccaattgctg
     1861 ctaaagcccg tcgtcattac aaattaggtt gaaaaaatga cgttaaatta caatgtcata
     1921 attgcgtaac aaagtagtaa tattttctaa acatagaaat agtctaagtc gttgatttta
     1981 ttctctttct ctattaataa gctgcactta ttattaatat attaatatag ttgttgattt
     2041 tcaacatata tataaattca ttatcagtgt atactgcaag atgcttgtac caagtcttta
     2101 aaatacaaaa actctattaa taaaaatttt tataaatata ctagaatgat cagaccttga
     2161 tatttttgca tttagagttt gttcatttta gatgccagag ataccaactt attcctcttc
     2221 aagatcacgt ttgagattag caagttcttt tatactatct atttgtatgt caccacttct
     2281 tgtaagtaat ctagatagcg ttggcttggc atcctttcct aaacttattg cctctttccc
     2341 tttcctaaga aaggagatag tcaatccatt atccgtgagt ttttgactaa attcttttgc
     2401 agtttttagt ttatcaaaaa gccctaattc ctcagaaatt ctgaaaaatt ctggttgcaa
     2461 gagatctacc attatcgaat cattgttaag atttatctgt actgcagact gatctttaat
     2521 gtcaattttg attacgccct ctgtcgcagc cctcatagat ttaaccagcg aatttgctat
     2581 ttggtcgtcc tcttcgatat gaagatgatc gtctcctacc atgtctctag atatcactaa
     2641 ccagtttatg tgtggatcta ttgtaattat gtctttgcta ttgacagccc atttaatgct
     2701 attaaccatc ttttaactgg ctggaccttg tgtcattaaa tttggatttc aaggttctca
     2761 aaactataaa ttatttccat gttttctatc aatttgtcaa gaaagttatg atactatttc
     2821 atccaaatga cataggatga taatatgtag aattttgttc attgtatttg atagtatttg
     2881 attgataatt ataataagca tatataaata taaatatata tatatataca aatacatatt
     2941 atatattttg tttagcagat aaagacatta tctaattaac taaatataat atttttacaa
     3001 ttaaaaagta aatcaagcat tttcattttg attttatcta taatatttat caaaaattaa
     3061 aaggaaatta tggaggagga actggagaag gcatctctgt caaatataga agtggagaag
     3121 gacgttcttc gatggtcatc tctaaatcta ggaactgtcc attcctatat atagtcaagg
     3181 ttattctatc accaactttc ttctgctcct caagatagga gataaaatct tcaatttgta
     3241 taacattatg cccatcaaca gctgttatta tatctccacc atgtttttca ccatattgat
     3301 ctgtaatgct tccatttact cctgctttat cagcagggcc atcctttaca attgaatcta
     3361 ctaatactcc tttgaaattt ctttctaaac cttcaacact ctcggctaaa tccgaagtta
     3421 aagtggcagc agtaagtcca agccatggat gagtataatt tcccttttca attaatgcag
     3481 gaactatgcg tgttatagta ttagatggaa tagcaaatcc tatacctgaa ccaaataatc
     3541 cagcggtgtt cattccaata acttgtccat tcatatttag caagggtcca ccagaatttc
     3601 ctggattgat tagagcatca gtctgaattg catttggtat ggaaaaacca agtcctccaa
     3661 ttggcagcaa gcgttcagca ttacttatta taccagtagt cattgtacct gctagaccaa
     3721 atggattgcc aatagctatt acctgttctc caacttcaag ttcagaagag tttccaatta
     3781 taagagggtt aagaggagga gaagattgct cagtaagatt ctcaacaatc tcaataactg
     3841 ctatatcact aaaaatatca gttcctatta catttgcagt atatctattt ccatctacta
     3901 atgttatatc cactatttta gcatcaccta ctacatggtt attagtaatt atgcgtcctt
     3961 tattatcata aacaaatcca gatcctaatg tagtagcatt ttctgattct ggacttggta
     4021 atatattgct aggtggaact ttccttgtta tctgaactac agagttctct acctctttga
     4081 atatgctatt aagagaaaga gaagattcat tatcctttgt tgggatcaca tcaacacctg
     4141 tgaagttttg ttgttgttgt tgttgttgtg ccataacagg attttgagat attaataata
     4201 cattcatcgt tgtaaatacg aatattatag ataatactat tttcagtttt gatctatgta
     4261 acatagcatg attaaatatc ataatcttat agatgttact attcattctg ttatagttac
     4321 aggcattact attttttctt cttttttaag ctcaataatt tttacaattt tgatatttca
     4381 agaggatact aatcagttaa tttcca
//
LOCUS       DATAAS010000468         3706 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5383181, whole genome shotgun sequence.
ACCESSION   DATAAS010000468 DATAAS010000000
VERSION     DATAAS010000468.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3706)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3706)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3706
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5383181"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..263
                     /locus_tag="VHF08_07545"
     CDS             <1..263
                     /locus_tag="VHF08_07545"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068543.1"
                     /translation="KGLTMMDQMRTAVGQCYDWNMPYGVFINGERDFHTNGDIHNLQL
                     AQRLEMLARDLVIYGKLTREQYNRDLMSSESNTFAAHYRVYP"
     gene            complement(490..1251)
                     /locus_tag="VHF08_07550"
     CDS             complement(490..1251)
                     /locus_tag="VHF08_07550"
                     /inference="COORDINATES: protein motif:HMM:NF014419.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068544.1"
                     /translation="MSDIYNPLTLKVLEAYSRDIGRGVARIDHNSLNYLGLSEGDSIE
                     IIDKDKTIEAKCLDLLPSDEGKGIIRLDPHLRKSIGVSLGKTIVIRSIKSDAQKNEID
                     SSREEEEEEALGKTPAKLYNKPASMIISGSCIDFEKERPKIMDFFGTLEIATHMKSQC
                     QCYTDGKKTLGWDFFEISLGADFVEKLRNLYPDIDKQEGNLIEQRFALWLEKQMKKKK
                     LEYHLKLREVPFEVSKGFRLNPKDYRDDSELEKLR"
     gene            complement(1314..2930)
                     /gene="lysS"
                     /locus_tag="VHF08_07555"
     CDS             complement(1314..2930)
                     /gene="lysS"
                     /locus_tag="VHF08_07555"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0017101 - aminoacyl-tRNA synthetase
                     multienzyme complex [Evidence IEA];
                     GO_function: GO:0004824 - lysine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006430 - lysyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEX2068545.1"
                     /translation="MIEEVIGKGTWIDKVASNLLNREKKLGRNLSLIRVESGLGASGI
                     PHIGSMGDAVRAYGIKLALENFGYKAELIAYSDDMDGLRKVPAGLPDWLQDYIAKPVS
                     NIPDPFGGCHTSYGAHMSGLLLEGLDEVNVSYRFQSASEAYRKGMLAKETDIILRNRG
                     LLGQKIAEYVGQKKYNEILPYFPVCESCGRLYVAKAEKYLPDENRVIYFCSEARIGEK
                     KLKGCGYGGQINITKGEGKLAWKVEFAARWNALDIRFEAYGKDIMDSVRVNDWVADEI
                     LGYTHPLHLKYEMFLDKGGRKISKSAGNVLTPQMWLKYGTPESILLLLFKRITGTRHV
                     GVDDIPVLMDEYDLYEDIYFDKVKENNQAKLIKLKGLYEYINHLKPPTQPSTHVPYRM
                     LVQQAALFSSEERINKINDRLIKYGMIKHKSKDLKKRIELASNWANDHLLAEEKFEIE
                     IKENHKKAIKELIETLKSFVGSEHESDAPKNLQSRIFNIARNNQMEPKEFFTLLYRML
                     LNTDRGPRLGNYALDLGINQTCNILERYIK"
     gene            complement(2935..>3706)
                     /locus_tag="VHF08_07560"
     CDS             complement(2935..>3706)
                     /locus_tag="VHF08_07560"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2068546.1"
                     /translation="KDIEDFRTLFEDPAFRPDMLKIYPTLVIQGTALHKLHQDGGYQA
                     YCDDDLIEVLIAVKKMVPPWVRIMRIQREIEYKDIIAGPKSGNLRQILLQKLKERGLK
                     CRCIRCREVGLQRRHLLDTEIKMNRIDYSASNGHEVFLAFESLDKSIILGFLRLRRIF
                     NPHRNELKGEDNSDTAAIVRELHVYGQMLNVGNKKQQKDISYQHQGYGFRLMQEAERI
                     AKDEFKVKKLSVISAVGTREYYKRMGYALNGPYVSKVL"
BASE COUNT         1045 a          760 c          576 g         1325 t
ORIGIN      
        1 agaaaggctt aacaatgatg gatcagatgc gtacagcggt gggtcaatgt tatgactgga
       61 atatgcctta tggtgtattt ataaatggag aacgagattt tcatacaaat ggagacatcc
      121 ataatttaca actggcacaa aggttagaaa tgctagcacg agatctggtt atctatggta
      181 aactaacaag agaacaatac aatcgtgatt tgatgagcag cgagtcaaat acttttgctg
      241 cgcattatag ggtttacccg taaatttttt caagacttca tttttttgaa atctcaatta
      301 tctgactttt cccatatcta tatattaaat atgacctaaa acaataaaaa aataatcaat
      361 gatttctaaa gtagaatatg gaaaagatct ataagaattt caatacatca tcattatcct
      421 aaagtatatg cttatagcaa tatatctatc atacataaca atcctgagtt tctgtatgat
      481 cacattttat tatcgtagtt tttcaagttc actgtcgtct cggtaatctt tgggattcaa
      541 tctgaatcct ttagagacct cgaaaggtac ctcacgcagt tttaaatggt attctagttt
      601 ctttttcttc atctgcttct ctagccataa agcaaatctc tgctcaatga gattgccttc
      661 ttgtttgtca atgtctggat agagattgcg taacttttca acaaaatctg cacctaggga
      721 aatctcgaaa aagtcccagc caagagtttt tttaccatca gtataacatt ggcactgact
      781 cttcatatga gttgcaattt ccaatgtacc aaagaagtcc attatcttgg gtctttcttt
      841 ttcaaagtcg atgcaagatc ctgagataat catagaggcc ggtttattgt acagtttggc
      901 aggtgtcttt cctaaagctt cctcctcctc ctcttctcta gaggaatcga tttcattctt
      961 ttgtgcatct gatttgatac ttcttataac gatggtcttg cctaaagata ctcctatgct
     1021 tttgcgcaaa tgaggatcta atctgattat acccttgcct tcatcggatg gtaaaagatc
     1081 taaacatttg gcttctattg ttttgtcttt gtctattatt tcaatagaat caccttcaga
     1141 caaacccaag taattcagag aattgtgatc tatacgcgcg accccacggc caatgtccct
     1201 ggaatatgct tcaagcacct tcaaagttaa aggattgtat atgtcactca tctagctttt
     1261 attttgcctt cataatataa gtagtttatc caatttttcg aatcgttata tatttatttg
     1321 atatatcttt ctagaatatt acaagtctga tttattccaa gatcgagagc atagtttcca
     1381 agtcttggcc ctctatcagt gtttaagagc attctataaa gaagtgtgaa gaattccttt
     1441 ggttccattt gattgtttct ggctatatta aatattctgg attggagatt ctttggagca
     1501 tcggattcat gttctgaccc aacgaaggat tttaaagttt caattagttc tttgatagcc
     1561 ttcttatgat tttctttaat ttctatttca aatttttctt ctgccaacaa gtgatcattt
     1621 gcccaatttg aagcaagttc tattcttttt ttcaaatctt tgctcttgtg ctttatcatc
     1681 ccatatttga tcaatctatc atttatctta ttgattctct cttcactaga gaatagagca
     1741 gcctgctgta ctagcatcct atacggtaca tgagttgagg gttgtgtagg gggttttaaa
     1801 tgattaatat actcataaag tccttttaat tttatcaatt tagcttgatt gttttctttg
     1861 actttatcaa agtatatgtc ttcgtacaag tcatattcat ccattaatac aggaatatca
     1921 tcgactccaa catgcctcgt accagtgatt cgcttgaaca ataatagaag aattgactct
     1981 ggggttccat attttaacca catctgagga gtaagaacat ttcctgctga tttgctaatt
     2041 tttcttccac ccttatcaag gaacatttca tattttaggt gcagtggatg agtataacct
     2101 agtatttcgt ctgcgaccca atcgttgacg cggacagaat ccatgatgtc tttgccataa
     2161 gcttcgaacc ttatgtctaa tgcattccac cttgcggcaa attctacttt ccatgctaat
     2221 tttccttctc ctttggtgat atttatctga ccaccatatc cacatccttt tagtttcttc
     2281 tctccaattc tggcttctga gcaaaaatag atcacccgat tttcatcagg taaatatttt
     2341 tcagcttttg caacgtataa tctaccgcaa ctttcacaga caggaaaata tggcaatatt
     2401 tcattatact tcttttgacc aacatactcg gctatttttt gcccaagtag gcctctattt
     2461 cgtagaataa tgtccgtttc ttttgctaac atccctttcc tataagcttc acttgcactc
     2521 tgaaaacgat agcttacatt aacctcgtct aatccctcaa gaagaagacc actcatatgg
     2581 gccccatatg atgtatgaca tccaccaaag ggatcaggaa tattagagac tggctttgct
     2641 atgtaatctt gaagccaatc cggcagacca gcgggaactt ttctcagacc atccatatca
     2701 tcagaatatg ctattaattc cgctttgtaa ccaaaatttt ctaaagcaag ctttatacca
     2761 tatgctctaa ctgcatcgcc catacttcct atatggggta taccagaagc cccaagacca
     2821 ctttctactc ttatcaaact taaatttcgt cctaattttt tttcgcggtt taaaagatta
     2881 ctagctactt tatcaatcca ggtgccctta cctattactt cctctatcaa tattttagag
     2941 cacctttgac acgtagggtc cgttcaaagc ataacccatt cttttatagt attctctggt
     3001 tcctactgca cttataacag acagtttttt tactttgaat tcatctttgg caattctttc
     3061 tgcttcttgc ataagtcgga agccataacc ttgatgctga taggagatat ctttttgttg
     3121 ttttttattc ccaacattta acatctgacc atatacatgc aattccctca caatggcagc
     3181 agtgtctgag ttatcttctc ccttgagttc atttctatgg ggattaaata ttcttcgcaa
     3241 tcgcaaaaac cccaatatga tagatttatc aagactttcg aatgccagaa aaacttcgtg
     3301 tccattggat gcagagtaat cgatgcgatt cattttgatc tctgtatcta atagatgtct
     3361 tctttgtaat ccaacttctc tacatcgtat acaacggcat ttcagacccc tttcctttaa
     3421 tttctgtaat aatatttgtc gcaggtttcc gcttttagga cctgcaataa tatctttgta
     3481 ttctatctct ctttgaattc tcatgattct aacccatggc ggaaccattt ttttaactgc
     3541 aattaagact tcgatcaaat catcgtcgca atatgcttgg tatcctccat cctgatgcaa
     3601 tttatgcaaa gccgtgcctt gaataacaag tgtaggataa atcttgagca tatctggtct
     3661 aaatgctgga tcttcaaata atgtacgaaa atcctcaata tctttt
//
LOCUS       DATAAS010000469         3237 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4856863, whole genome shotgun sequence.
ACCESSION   DATAAS010000469 DATAAS010000000
VERSION     DATAAS010000469.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3237)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3237)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3237
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4856863"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            286..612
                     /locus_tag="VHF08_07565"
     CDS             286..612
                     /locus_tag="VHF08_07565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEX2068547.1"
                     /translation="MSEPQTQPQQNQQLNKDGIRDAIYIGKKPLMAYVTSTLIQLANQ
                     PSVTIKARGLSIGRAVDVSQIILKRMESAGYNIGDVRIGSETVQSEDGRTRNVSTIEI
                     EVKRSS"
     gene            664..1290
                     /locus_tag="VHF08_07570"
     CDS             664..1290
                     /locus_tag="VHF08_07570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068548.1"
                     /translation="MGRRAIIYLAHMNPFTKAHQTIISSFLKKDYGIYIFPVRFLKDG
                     KEINTRSFPFPYKIRKAMVESVFNHNNNITILPDYTFFYPFIKYLPPLISPYSWVLRN
                     QIVRNIKENDFVAYTGDEMESIALKLYKLHPNKFKRLEISASNVKEMLYLQAIKGIPN
                     EGEAWHDKVPKEVVTLINENWKIIEKYARCPDFTMRLMGMKFPKEGLF"
     gene            1325..2242
                     /locus_tag="VHF08_07575"
     CDS             1325..2242
                     /locus_tag="VHF08_07575"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004084 - branched-chain-amino-acid
                     transaminase activity [Evidence IEA];
                     GO_process: GO:0009081 - branched-chain amino acid
                     metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid transaminase"
                     /protein_id="HEX2068549.1"
                     /translation="MKTKGAELIWFDGKFVKWDEATVPIMTHALHYGTAVFEGIRAYA
                     SRNNLYVFKLKEHMERLHRSASVYSIALNYTAKELCEATTQLLKKTGLRESCYIRPLT
                     FVGLHGIDLNITRESPTHTAIIIFPFAKYFKGEGIKACISSWRRIHDTAIPPMAKAAG
                     NYLNSILATQESRRNGYDESILLDRDGYVSEASGENIFLVRNNNIYTPSIASSALEGI
                     TRDTAITIAKDLGYKVKERSISRTELYIADEIFLTGTAAEIIAVTSIDDRAIGNGIEG
                     FITKSIREKYSEIVSANVEGFMSWLTPVW"
     gene            2221..3201
                     /locus_tag="VHF08_07580"
     CDS             2221..3201
                     /locus_tag="VHF08_07580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEX2068550.1"
                     /translation="MVNPSMVITEDKFKLAIVGVGGWGKNHARVLHDLDSLVAICEID
                     LQRGKEIADKYGARLYSSLDDMLDKERKLDACLVCTPTKTHSIIAKKIMEKGINVFVE
                     KPLALSSKECEEMMDIAEKKKVILTSGYIERFNPVVQEVKRLIDCRKYGDLLMMEFHR
                     ENRMPLHVKDVGIIYDTSVHDIDTAMLLFNCRPQVVFALSGKKFHSYEDFATIMLGFK
                     GQKVSIIASNWITPKKVRKFSAVCTDGIIAGDFITQEITIDHEDSTIIPRHQQFQEPL
                     TLELQSLLDAIDGKISIPVISAIDATNVTRVAEAALLSSNTGSPIYLDLK"
BASE COUNT         1110 a          534 c          620 g          973 t
ORIGIN      
        1 aatacaggga actagaaatc ctctgacaaa tactattata atcactatca tcatccgaca
       61 aagtttactt cacgtaaaag ataggtagtt tctagtttgt atatcctcaa gcatctaata
      121 agtatagttt tagccattag cgcataatta aatttttata attttcatca aattcgcttt
      181 atcatttaaa taccaaacta ctttatatag cccaaaaaga ttgtttaata tcaagcttta
      241 cttacatctt ctagatttaa attatcctaa ggatttactt gtattatgtc ggaaccgcaa
      301 acacaaccac aacagaatca acaattaaat aaagacggaa ttcgtgatgc tatctacata
      361 ggaaagaaac ccttgatggc ctacgtcacg tcgacactca ttcagcttgc caaccagcct
      421 tcagtaacaa ttaaggcaag aggcttgagc atcggaagag cagtagacgt ttctcaaatc
      481 attttgaaga gaatggagag tgctggatac aatataggtg atgtaagaat tggctccgaa
      541 acagttcaat ctgaggacgg taggacgcgg aatgtttcta cgattgaaat cgaagtaaag
      601 agaagttctt aagcgtccta cgatactttt tgttcttata tccccttata ttttactaaa
      661 gcaatgggaa gacgagctat aatctatctt gctcatatga atccattcac caaggcgcat
      721 cagacgatca tcagttcatt tctaaagaaa gattatggta tctatatttt tccagtaaga
      781 tttttaaaag acggaaagga gatcaatact agaagcttcc catttcctta taaaattaga
      841 aaagctatgg tagaatctgt gtttaaccat aataacaaca ttacaatttt acctgattat
      901 acattttttt acccctttat aaaatatcta ccacctttga tttctcctta ttcttgggtt
      961 ttgcgaaatc aaattgttag aaatattaaa gaaaatgatt tcgttgctta cacaggcgat
     1021 gaaatggaga gtatagcatt gaaattatac aaacttcatc cgaataaatt caaacgactg
     1081 gaaatttcag cttctaatgt gaaagaaatg ctttatcttc aggctatcaa aggaatacca
     1141 aacgaaggtg aagcctggca tgataaggtg ccaaaagaag ttgttaccct aattaatgaa
     1201 aattggaaaa ttatagagaa atatgcacga tgcccggatt ttacgatgag gctaatggga
     1261 atgaaattcc caaaagaggg tcttttttga agatttttat aatccaaaaa tgactttgcc
     1321 ttagatgaag acaaagggcg cagaattaat ctggttcgat ggcaaatttg ttaaatggga
     1381 cgaggcaaca gttcctatta tgactcatgc tttacattat ggaactgctg tttttgaagg
     1441 tattcgagca tatgcctcta gaaataactt gtacgtattc aaattgaaag agcatatgga
     1501 aagacttcac cgatctgcgt cagtatattc tattgctctt aattatacag caaaagagct
     1561 ctgtgaagca acgacacaat tattaaaaaa gacaggactc agagagtcat gctatataag
     1621 acctttgaca tttgtaggat tgcatggtat agatctaaat attactagag agtctccaac
     1681 tcatactgcg attataattt ttccatttgc aaaatatttc aagggagaag gcatcaaagc
     1741 atgtatttca tcatggcgta gaattcatga tactgcaatt cctcctatgg cgaaggctgc
     1801 gggaaattat cttaattcaa tacttgcaac acaagaaagc agacgtaatg gttatgatga
     1861 atccattttg cttgatagag acggatatgt cagtgaggca tcgggtgaaa atatattttt
     1921 agtgaggaat aacaacatct atactccctc tatagctagt tctgcattag aaggaattac
     1981 gcgtgatact gcaataacca ttgcaaagga tttaggatat aaagtaaagg agcgttctat
     2041 atctaggaca gaattgtata ttgcagatga gatatttttg acagggaccg ccgccgagat
     2101 catcgcagtc acaagtattg atgatcgagc gataggtaac ggaatagaag gctttattac
     2161 aaagagtatt cgggaaaaat actcagaaat cgtatctgca aacgttgaag gttttatgag
     2221 ttggttaacc ccagtatggt aataacagaa gacaagttca aactagctat tgttggtgtt
     2281 ggaggatggg gtaagaatca cgcaagagtt ctgcatgatt tggatagttt agtagcgata
     2341 tgcgagattg accttcagcg tggtaaagaa atagcagata agtatggtgc aagattatat
     2401 tcttccctag acgatatgct tgacaaggag agaaaattag atgcttgcct cgtatgtaca
     2461 ccgactaaaa cccattctat tatcgccaaa aaaataatgg aaaaaggaat taatgttttt
     2521 gttgaaaaac cacttgcact ttcttcaaaa gaatgtgaag agatgatgga tatagctgaa
     2581 aagaaaaaag tcattttgac ttcaggttac attgagcggt tcaatcctgt tgtacaagaa
     2641 gttaaacggc ttatagattg cagaaagtat ggtgatctat taatgatgga atttcataga
     2701 gaaaatagaa tgccattaca tgtcaaagat gtcggaataa tttacgatac ttctgttcat
     2761 gatatagata ctgcgatgct tctgtttaat tgtaggccac aagttgtatt tgctctttcc
     2821 ggtaaaaaat ttcactctta tgaagatttt gcgactatta tgcttggttt caagggtcaa
     2881 aaagtatcga ttatcgcatc aaactggatt actcctaaga aagttagaaa gtttagtgca
     2941 gtatgtactg atggtataat agcgggagat tttatcacgc aagaaattac tattgaccac
     3001 gaagattcta ctataattcc ccgccatcaa caatttcaag aacccttgac cttggaatta
     3061 caaagtctat tggatgcgat agatggcaaa attagcatac cagttatttc ggcaattgat
     3121 gcgacaaatg ttacacgagt ggcagaagca gcacttttat ctagtaatac tggctcccca
     3181 atttatctgg atctgaaatg atacatgaaa aaatcaatgc ttgatatcct cgcatgc
//
LOCUS       DATAAS010000470         2580 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3221664, whole genome shotgun sequence.
ACCESSION   DATAAS010000470 DATAAS010000000
VERSION     DATAAS010000470.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2580)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2580)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2580
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3221664"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            341..682
                     /locus_tag="VHF08_07585"
     CDS             341..682
                     /locus_tag="VHF08_07585"
                     /inference="COORDINATES: protein motif:HMM:NF012753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEX2068551.1"
                     /translation="MKKIDAIIRSERMPLVKERLRQLGIGGMTISTVSGWSKQRELHL
                     QWRGQPVAYDLLPKAKFELIVPDDRVDSVIQAVTESARTGDHGDGVIFVSTIEQAINI
                     TTLDKGEKVVQ"
     gene            complement(821..982)
                     /locus_tag="VHF08_07590"
     CDS             complement(821..982)
                     /locus_tag="VHF08_07590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068552.1"
                     /translation="MNNSKSNFTLSDTEWQTVLDALSNTIFNQELTEEARKNAKELFL
                     KLQKELPNK"
     gene            1330..2109
                     /locus_tag="VHF08_07595"
     CDS             1330..2109
                     /locus_tag="VHF08_07595"
                     /inference="COORDINATES: protein motif:HMM:NF024109.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2068553.1"
                     /translation="MKVDNLHIRYIDTKSKGKSVLLIHGLGGSIESWINNIDILSTKQ
                     LRVIAVDLPGFGSSDKPQINYTINFYTKFIAKFIDSLKISGPVSIVGSSLGGHIAAEV
                     AIHYYKIVCKLVLVSPAGALPFSFRGTSALLKYTNILKARTLQEVKRALSSVDDNLVD
                     ENYAQVVYQQLSMPGAKEAFLSALRGSARSPRLNRRLHKIKAKTLLIWGKEDRIIPVK
                     YIEPFIKMKNCRLILLENSGHRPYVDKPAIFNNVVADFIND"
BASE COUNT          881 a          370 c          458 g          871 t
ORIGIN      
        1 ataaggacat aagtatagta aagtacttta aaattatcag catgaatatt attagtaaat
       61 ctatacgcat attagaaaaa agaaagtaaa ggggaggaat tgattatgct cattaggtat
      121 gaagtatttg gaacaaaaac actatacttc tagacaggag acaatatctt ggaaaaaaaa
      181 catctaccgt cacaattaat aatatattaa tagagtatcg aaacaaccca agaattcttg
      241 cttttatctt cttaggaaga agtaatttta attattgagc aaactttcag atacaatatc
      301 accataaaca ttttaagact aatcgcatat tgacgtcatt atgaagaaga tagatgcaat
      361 tataagatct gaacgaatgc ccttagtcaa ggagcgcctt agacaattgg gaatcggtgg
      421 catgacaatc tctactgttt ctggatggag taaacaaaga gaactccatt tacaatggag
      481 aggccaacct gttgcatatg atcttcttcc aaaggcaaaa tttgaattaa ttgttcctga
      541 tgatcgtgtg gattctgtta ttcaggcggt tacagagtct gctaggacag gtgaccatgg
      601 cgatggagtt attttcgtat ctactataga gcaggcaatt aatattacta ccctagataa
      661 aggtgaaaag gttgttcaat agcaaagagg atagcacaat ctgctttggg ctatttctta
      721 catattagtg atagtaattt atcaagaata gtctttattt ttaaatcata aaaatttgtg
      781 acaaatgttg gggcgacata ttaagtagat ttaagctaat ttacttatta ggaagctctt
      841 tttgtagctt caaaaataat tcctttgcat ttttcctagc ttcctcggta agttcttggt
      901 taaaaattgt gttactgaga gcgtctaaga cagtttgcca ttcagtgtca gaaagagtga
      961 agttggattt gctattattc ataatacata cttgcaattt agaccagtta taaaattctt
     1021 attcttaaaa tacgctaaaa taatatatta ttacatgatg ttattatcaa tgatgctgtt
     1081 ttttatgaat cctctatgat aaggcaatat cttataagaa taagccgaag atattattga
     1141 aacagaaaac gttatagata tgtccgtaat aagatgatgt ccaaattgta cttgaaagaa
     1201 gctttgcagg cattgagagt atttaaatta tgaaaatgtt agtttcaaat aaccatgtca
     1261 ttaaataaga aaaggcattt tatgctaata aatacgatat ccaattaata aaatatggat
     1321 tttcactttt tgaaggttga taaccttcat attcgttata tagatacaaa gtcgaaaggc
     1381 aaatctgtgt tacttattca cggtttaggt ggatcgatag agagttggat caataatatt
     1441 gacattcttt caacaaagca actaagagta attgcagttg atcttccagg atttggctct
     1501 agcgataaac cacaaatcaa ttatacaata aatttttata caaaattcat tgcaaagttc
     1561 atcgattctt taaagatatc aggtcctgta tctattgtcg gctcttcact tggaggccat
     1621 attgcagcgg aagttgcaat acattattat aagatagttt gcaaacttgt tttggtaagt
     1681 ccggcaggtg cattgccttt ttcatttaga ggaacatctg ctttgctaaa gtatactaat
     1741 atattaaaag caaggactct tcaagaagta aagagagcat tatcttctgt agatgacaat
     1801 cttgttgatg aaaattatgc acaggtggtt tatcaacagt tatctatgcc tggagcaaag
     1861 gaggcgttcc tgtctgctct tagaggtagt gctcgttcac caagactaaa caggcgttta
     1921 cataaaataa aggcaaagac actattgatt tggggaaaag aagatcgtat aattcctgta
     1981 aaatatattg agcctttcat aaagatgaaa aattgcagat tgatactcct tgaaaattct
     2041 ggtcataggc catatgttga caaaccagca atttttaata atgttgtagc agatttcatt
     2101 aacgattaag gaaatcttga aagtatgtct tgtttattca tctttgctca gtagtcagga
     2161 ttattactct gatgtctgca gcctattcat tggtaagtgc tctaaattaa ttgtcatttt
     2221 gtttttttta ttattcatgt tataataatt cattgagtaa tcgatatgtt cgagcatcaa
     2281 ctcgctctta tgtagtctat aatggggtaa aaaatctaac tagacattag ctaaaatttt
     2341 tcgtattatt tgtagttaat attatgtggg ggcgatataa tcctacgatg gagacatgcc
     2401 tttaattcct ttaattcaca taactgaatt tttcaataca ttatcgttag acaaataaca
     2461 atttatccta gtaaactttt cttttaggta tccaattgaa agtctctgac aggacgcgtg
     2521 gagtagaata tgctattcgt gatatcattt catatgcaaa tgtttatgaa aaatctggaa
//
LOCUS       DATAAS010000471         1562 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3761594, whole genome shotgun sequence.
ACCESSION   DATAAS010000471 DATAAS010000000
VERSION     DATAAS010000471.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1562)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1562)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1562
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3761594"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            837..1130
                     /locus_tag="VHF08_07600"
     CDS             837..1130
                     /locus_tag="VHF08_07600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068554.1"
                     /translation="MSTIRVYKRNSTFVELPSLVEELSNTGLHNTLKKYYNEPVEHEA
                     KSIVAGPSFLQYLNKLFRIQIAAGDILQFESDSHNKFFMFSLTGTWDEIIELK"
BASE COUNT          523 a          265 c          282 g          492 t
ORIGIN      
        1 tgatattcat cccaaattaa gccatcttta gccattaatg gaaaagattg tttctgaagc
       61 tcaacaatat ctggaatatc ttctgacgca atgtttctaa tgatgatgct attatcgtta
      121 ttaccagtcg acaattaaat cagctcaatc atcgggtttt attatataaa attggtgtgt
      181 atgcctgcta gaattcattc ggacgaccaa aatcctttag cagtcaacta gtatgccatt
      241 aattttccca gaagtaagtc tagatgtctg cttcggtatg gttctgtaaa ccaattggga
      301 cagacacata tctctcttgt aggtgatcta tttttacatt tttgggtcaa gaggggtagt
      361 aaatgtcatt tgcaggtagc atttagacta tacacataac atcatctaag ctgacctcct
      421 tcggtagctt gattttgcat ttatactctg tttattcgag ctttttctcc tcttctttat
      481 cttttccatg gtcgtatgtt actaacacac attatttagt atgtgacata tggaaaaata
      541 ttagacaagg ttcttttgcg tctttcattt cataactgaa ttaaagtaat ttttggaaca
      601 atcatctgag caaaactcca aaactcccat gacagagctt gaatacagta caccgcgggt
      661 aagattttga aattcttttc cacaggattt acatattttt atcaattttc tgttgcgaca
      721 ttcttacttg agcatataag ccttaagata ctttacatgt atgtgtggag gaataggcag
      781 gactatatac ctccatactg gcatgataaa gataatgagg aggacatata ttttcattgt
      841 cgacaattag agtctataag agaaactcaa cttttgtgga actaccaagc ttagtggaag
      901 agctcagtaa cactggattg cataatacat tgaaaaaata ctacaatgaa cccgttgagc
      961 atgaagcaaa gagcatagtt gcaggcccaa gttttttgca atatctaaac aaactattca
     1021 ggattcagat agcagctgga gatatactac agtttgagtc agatagtcat aacaaatttt
     1081 tcatgttctc attaactgga acatgggacg agataattga gctgaaatga caaaattaac
     1141 gctcttcgta cgtgtccttt agttctcatc cctccaggac tacaaacaag ttaaaccggt
     1201 tcagatatct tgcatcacgt atacaacata cgattgaaga ttgcattagt atgaagaaga
     1261 aatgatatag ggatagataa agagaaattt aagaagtacg aataataata ataataacaa
     1321 tcaatttcct attgaatagg gacatattgc agcagcatag cagtggcaat attcatttta
     1381 aaagatctgt gctacttaat aaaacaggag aggagatcat caaaatcctt attggaagac
     1441 atgttattct tattatcgac aaaaaccaat gtgtgttgac actagaagtt gggatgttga
     1501 taacccggag aaagagatag gtgaagcaaa tagaaaccta caaaccagat taatgcagat
     1561 tg
//
LOCUS       DATAAS010000472         2721 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5388490, whole genome shotgun sequence.
ACCESSION   DATAAS010000472 DATAAS010000000
VERSION     DATAAS010000472.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2721)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2721)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2721
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5388490"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(156..1238)
                     /locus_tag="VHF08_07605"
     CDS             complement(156..1238)
                     /locus_tag="VHF08_07605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068555.1"
                     /translation="MANSIGPKISNDFGRFILGAILISSVIAMAINYSIENAYAADNN
                     WYVGEGAKQNMYVKYNIRELDTNNGRPFEMTIYFKGKDDKGNWIAPVFVVDEGRVISG
                     TFILSALDLTALGSSDIPDEMRQYRSAYSNSLKWLSAYVAKPGQSLSAASWGKIGSIG
                     GSEIKPAGTAKITIPAFPQPIDTTVIRYHKSVDSDLWILNEFPYPVKAKTFVDVTTGS
                     PRVQFEFELLATGQGEPPKPQGEVLAVKPPLLERTPRGTYFVRLGWEPETIQAGNETR
                     FLVEVMDDTQFPLDRVSYDFKVLNSNSTAVLDLKNQFAEDGTAVHPVKFNVTGPAKVQ
                     VVVNGVQGVNAGEFVENTEFDIGVAS"
     gene            1436..1600
                     /locus_tag="VHF08_07610"
     CDS             1436..1600
                     /locus_tag="VHF08_07610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068556.1"
                     /translation="MCNCPKVHFYEVDFKLAGMRVMPTHKNCGDALNEDQSSKFEKEL
                     IKYWGFEEKG"
     gene            1739..1993
                     /locus_tag="VHF08_07615"
     CDS             1739..1993
                     /locus_tag="VHF08_07615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068557.1"
                     /translation="MAKMLTVNIDTSGVDQNEAKEWVNEMANVYADMEIEDVNVSGNK
                     ISFKAGFSGMDDTEPDDVKMKIEEYLTMNEAFQAKDVSVR"
     gene            2110..2349
                     /locus_tag="VHF08_07620"
     CDS             2110..2349
                     /locus_tag="VHF08_07620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068558.1"
                     /translation="MTCKGICVRHKAQKPVGSGRYASGQKRCQICEIFIKWDGLWCPC
                     CGYRLRTKPRNLKYKAKLRARNKKLEPITPAVIVR"
BASE COUNT          886 a          479 c          497 g          859 t
ORIGIN      
        1 gaaaagaaaa gaaaagaaaa ggagaatgat taaatatttc tgatttctgc tatatagtaa
       61 ggagggcttc attagacgtg ctgttatgaa gaccaccagt cttcagatta tattattatt
      121 attattatcc attaacctca ttgtactgtt ggaaattatg atgctacgcc aatatcaaat
      181 tctgtgtttt ctacaaattc gcctgcattg acaccttgaa cgccgtttac tacaacttga
      241 actttagctg gaccagtaac gttaaatttg acaggatgaa cagccgtgcc atcctcggca
      301 aactggttct tgagatctaa aacggcggtg ctgtttgaat ttaatacctt gaaatcgtaa
      361 ctgactctgt caagtggaaa ttgagtgtcg tccataactt caacgagaaa tctggtttcg
      421 tttccagctt gtattgtttc tggttcccaa cctaaacgaa caaagtacgt tccacgaggt
      481 gtgcgttcaa gcaagggtgg cttgacggcg agaacttctc cttgaggctt tggaggttcg
      541 ccttgacctg ttgctaataa ctcaaattca aattggacac gaggacttcc cgtagttacg
      601 tcaacaaagg tttttgcttt tacagggtaa ggaaattcat tgagaatcca taaatcgcta
      661 tcaacagatt tatgatatct aattactgta gtatcaattg gttgaggaaa ggccggtata
      721 gttatctttg cggtaccagc tggtttaatc tctgaacctc ctatcgatcc aatcttaccc
      781 catgaagctg cactcaatga ctgaccaggc ttagcaacat atgctgacag ccattttaag
      841 gaattagaat atgcacttct atattgacgc atttcatcag ggatatcgga gcttcccaaa
      901 gcagttaaat ctagagcact taatataaag gtgccagaaa taactcttcc ttcgtcgact
      961 acgaatacag gagcaatcca atttccttta tcgtctttcc ctttgaaata aattgtcatt
     1021 tcaaaaggtc tgccattgtt agtatcgagt tcacgaatat tgtattttac atacatgttt
     1081 tgttttgctc cctcgccaac ataccaattg ttatcagccg catatgcatt ttctatagaa
     1141 taattgattg ccatggctat aacagaagaa ataagtatag ctcctaaaat gaagcgacca
     1201 aagtcattac taattttagg cccaatgcta tttgccatag atataataga ataatggaat
     1261 tgataaatgt ttatagattt gcaagagttg tacagaccat ttatctactc aatatctaga
     1321 atatttaatt tgtattacca aaagcatgtg aagaaccaaa aaatatttta tatatatatg
     1381 cggtctttaa gcaaccacaa aacaaataag tggcagattc aaattagagt taataatgtg
     1441 taactgtcct aaagtccact tttatgaggt agattttaaa ttggcaggta tgcgagttat
     1501 gcctactcat aagaactgtg gagatgcttt gaacgaagac cagtcttcaa aattcgaaaa
     1561 agaattaata aaatactggg gctttgagga aaaaggttag tggtcaaaaa cacacactga
     1621 tttcaaacat tatttataaa taaaattgat acatagttta aatccaagac ttttatatgg
     1681 ttcgcagacg cgtcaacttt attaatgtct gttgtagatc ccgttcaggt gatttagaat
     1741 ggccaaaatg ctaactgtaa acatagatac ttctggagta gatcaaaatg aagcaaaaga
     1801 atgggttaat gaaatggcaa acgtttatgc ggacatggaa attgaagatg taaatgtttc
     1861 aggaaataag atatcattta aagcgggatt ttcaggaatg gatgatacag agccagacga
     1921 tgttaagatg aaaattgaag aatatctgac tatgaatgaa gcatttcaag ctaaggacgt
     1981 ttctgtccga taaaacagaa aacaaataac ttttttttac tcaataccga aatttgttgc
     2041 taatgaatca cgattagtta ttacacagct ttaaatacta catagactag ctatctttgg
     2101 ttagaagtta tgacttgtaa aggtatatgc gtacgacaca aggcacaaaa gccggttgga
     2161 tccggccgtt atgctagtgg gcagaaacgc tgtcagattt gtgagatctt cattaaatgg
     2221 gacggattat ggtgtccatg ctgcggatat aggttgagaa cgaagccgcg caatctaaag
     2281 tataaagcaa aattacgagc aagaaataaa aaattagagc ctattacacc cgctgtaata
     2341 gtgcgatagt ttttttaata taattttact tatactcaca aggttgatgt gcaacttttc
     2401 taattgttgc atatcctttg ttaaatccat agatatctgt atcaacttca tatatttgct
     2461 caggaattca taatctctat agactagaca tctatgcccc attttaccaa ggtaataata
     2521 acaatccgat accattcctt tttcaagcaa gtggttcact tttatcttta tcaattcttt
     2581 atcataatcc atggaattta attaacatat tgcttcgata gacctagata tggtagatct
     2641 tgtggctcgt tctaatccta cacattctaa ggctatcttt acaccttcag caatctcttg
     2701 gcgctctata gttatctttc t
//
LOCUS       DATAAS010000473         2141 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3763566, whole genome shotgun sequence.
ACCESSION   DATAAS010000473 DATAAS010000000
VERSION     DATAAS010000473.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2141)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2141)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2141
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3763566"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(462..965)
                     /locus_tag="VHF08_07625"
     CDS             complement(462..965)
                     /locus_tag="VHF08_07625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068559.1"
                     /translation="MFGIEKKKIKWKMEYEDTIYKIYDWDKNLAGYFFPKYDLVESSK
                     DSSNEEDIIERLNKSHKKVIGGDLMIPMIKLNLFDKEEEEVIDLDYTIRALDENLQRT
                     RVWKQWLQQNHKEYEIIGNAVYTAREDRNMLSIVLRIKSTITLGEKEMSMALTPLLDN
                     LHEDGLL"
     gene            complement(1066..1566)
                     /locus_tag="VHF08_07630"
     CDS             complement(1066..1566)
                     /locus_tag="VHF08_07630"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068560.1"
                     /translation="MVSARSFFSRMNQSRNENWLTDAQLLKGSEEFFRSNNYYNIEYN
                     RVFEQGRQIFSSPIVASKMKGREEEIETIVAVFRSKITHYDLSFFGILESTLYDIVDN
                     YENTNLMLVTDSLSYIPIIKTEELSVIIENMMKDGLYILFLNHRFAYALFDNFENLTK
                     PIPVQE"
BASE COUNT          672 a          365 c          301 g          803 t
ORIGIN      
        1 caaacatcaa caatactggg gaattggtag actttccaat aacagttacc tgatatcgaa
       61 ggtcatggaa ctgattctgt aatctattta tccccgtata ctgatggtta tgttcattat
      121 aattcactac ttcaagaatt acattcagga cattcctcaa tgaacagctt atctgttttt
      181 tctgtgtcat ctggtgcaag gataaaacct ctgttcttgc atgttggaca cacttgtatt
      241 ttagaagtgc caagacaata tgctgggcag tcctcctgct cgtatttgat actgttataa
      301 agagtcagta caatcttata ttcgtcaatg tggtataaaa agcctctctc agcatatcat
      361 ttacagtccc taaatggatc tgataatgat caatgatcca agtattcttc agaaccaaaa
      421 gtctgttgta gggatactta aagaccggta tttacatcat cctataaaag gccatcttca
      481 tgtagattat ctaataatgg agttaatgcc atagacattt ctttttctcc caatgtaata
      541 gttgatttta tcctaagaac aatggaaagc atgttcctat cctctctagc agtatatact
      601 gcattgccaa ttatctcgta ttccttgtga ttttgctgca accattgctt ccatactcgt
      661 gttcgttgga gattttcatc cagtgctcta atggtataat ccaaatctat tacttcttct
      721 tcctctttat caaagagatt cagtttaatc atgggaatca tgagatctcc gcctatgacc
      781 tttttatgtg acttgttcaa tctttcgata atatcttctt cattgctgct atctttagat
      841 gattctacta aatcatattt tgggaaaaag tatcctgcta aatttttgtc ccaatcataa
      901 attttgtata ttgtatcttc atattccatt ttccatttta tcttcttttt ttctattcca
      961 aacaattagt attactaaat aattagatgg atatatgtaa gttaatgacg gcttacctac
     1021 tctatattat tcttcaatat gatttggatt atcatattgg cctttctact cttggactgg
     1081 gataggttta gttaaatttt caaagttgtc aaataatgca taagcaaatc tatggttaag
     1141 aaataaaata tacaatccgt ctttcatcat attctcaatt atgacgctta attcttcagt
     1201 cttgataatt ggtatgtatg atagtgaatc tgtgacaagc atcaagtttg tattttcata
     1261 attatccact atatcatata gcgttgattc tagaattcca aaaaaactaa gatcataatg
     1321 ggttatctta gatctaaaaa cagctacaat tgtttctatc tcttcttctc tccctttcat
     1381 tttagatgca actattggtg aagaaaatat ctgtcttcct tgttcaaaga ctctattata
     1441 ttcaatatta taatagttgt ttgatctaaa gaattcttca cttcctttta gtaactgagc
     1501 atcagtcagc caattttcat ttctagattg attcattcta gaaaaaaatg atctagcact
     1561 taccattcgt ggattaggca aacaattaac tattttcttt ctcctaataa atcgttgcta
     1621 agccattatc agcagtcaag atcagaagtt ctttgaagat agtaaataaa atagcaaaga
     1681 ataatacatt gttaataata actggcatta gtcaaacact tagatagata tattcttaca
     1741 aaagtaattt gaagatgaaa atataaaatc cttttgtata aaaattatgt gttttttggt
     1801 atagcatatt ttgtatatgg agttattgtt attgtcactt ttcaagcaag ttattcagct
     1861 taattaaata aaaaactgtt acatattata attacaacgt cctcaaagcc agcagggctc
     1921 atcattattg ttattatcgt gatctttatc cttattggca acatttatca tctttgctat
     1981 atattcaaat tgtctataat gttacgctat cctaagggat aaaatggtat attttcctat
     2041 atagtagtat gttaaccgaa attattatat aacatagtat ctatagtttt tatacctatc
     2101 cacaaaagag gatgataata gggtaagccc tgagcatatc c
//
LOCUS       DATAAS010000474         1541 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_4313650, whole genome shotgun sequence.
ACCESSION   DATAAS010000474 DATAAS010000000
VERSION     DATAAS010000474.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1541)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1541)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1541
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4313650"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            206..1456
                     /gene="larC"
                     /locus_tag="VHF08_07635"
     CDS             206..1456
                     /gene="larC"
                     /locus_tag="VHF08_07635"
                     /EC_number="4.99.1.12"
                     /inference="COORDINATES: protein motif:HMM:TIGR00299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel pincer cofactor biosynthesis protein
                     LarC"
                     /protein_id="HEX2068561.1"
                     /translation="MTKIAIIDSQTAGISGDMLLSCLIDAGADRNKVVNAIVACQNFL
                     EGTKITDAAFIKTKSHGFNATQFHFQFKDSISERNGMKMFHSLAMCCDFLKLEQRAKT
                     FALESFKTLISAEAIIHGENINSVHLHESSSIDTFADLVGCATALQDLKLFGCRIFST
                     KVAIGGGLLKFSHGIISNPTNAILEIFKGKQFTLIGGQVDEEITTPTGAAMLVNLTSE
                     SINYYPSFSPEKIGYGAGLKKFSHMPNTLRLVIGTSQIVYDTTIDTIFMIETNIDDIS
                     GEIVGNMIEQLTESGAKDVTVIQGISKKNRPIHLIRVITDHKYVNNILEILFRESGTI
                     GVRIQEIQRIVIPRSIVTVPVKIHDNFFNIHVKITKDSDGRIITIKPEFQDIVVIASR
                     IGISVKQALDLANSELFHTIGRKS"
BASE COUNT          537 a          258 c          277 g          469 t
ORIGIN      
        1 atagcctatt aactaaaggc atgacaatat tctaaattta tacctttgat tcatagttgc
       61 gtcctgcttc gaaccaaagg taagtataat cttttaaaaa agagtcaaaa gtattgcaaa
      121 ccaaacagaa tcacctgaac cacaaaagac ttttatcttt tcaggcaaat tatatattta
      181 caaatcgcag caattttttt atcagatgac aaaaattgca ataattgatt ctcaaactgc
      241 tggcatatca ggtgatatgt tattgtcatg tttgattgat gcgggggcag atagaaacaa
      301 ggttgtcaat gcaattgttg cgtgtcaaaa tttcctagaa ggaactaaaa ttacagatgc
      361 agcatttatc aaaacaaaat ctcatggttt taatgctaca caatttcatt ttcaattcaa
      421 agatagcatt tctgaacgta acggaatgaa aatgtttcat tctcttgcaa tgtgttgtga
      481 ttttttaaaa ttagaacaga gagccaagac cttcgctctg gaatcattta aaacgctgat
      541 atcagcagag gctattattc atggcgaaaa cattaacagc gtccatttac atgaatcttc
      601 tagtatagat acctttgcag atctagtcgg ttgcgcaact gcgctgcagg atctcaaact
      661 ttttggatgt cgaatatttt caaccaaagt ggccatcggt ggcggacttt tgaaattttc
      721 gcatgggatc atctctaatc caactaatgc cattcttgaa atatttaagg gaaagcagtt
      781 taccctaata ggaggtcaag tagatgaaga gataaccact cctactggcg cagctatgct
      841 tgttaattta acatcagaaa gtatcaatta ttatccaagc ttcagtcctg aaaaaatagg
      901 ttatggtgct ggattgaaga aattctcgca tatgccaaac accttgagat tggtcatagg
      961 tacatcgcaa atagtctacg atactactat agacaccatt ttcatgatcg agacaaatat
     1021 agacgatatt tctggcgaaa tagttggaaa tatgatcgaa caactaacag aatctggtgc
     1081 taaggatgtc accgtaatac aaggtatttc taaaaaaaat agaccaattc atctcattag
     1141 agttataact gatcataaat acgttaataa catattggaa atactattca gagaatcagg
     1201 tacaatcggt gtgagaattc aagagataca gcgtattgtt attccacgaa gcattgttac
     1261 agttcccgtc aaaatacatg ataacttttt taacattcac gttaagatta caaaagattc
     1321 tgatggcagg attattacta taaaaccaga atttcaagac attgtagtta ttgcttcaag
     1381 gatagggata tcggttaaac aagcattgga tctagcaaat tcagagttat ttcatactat
     1441 tggaaggaag agttgaatat gtcaagcgaa tcaacagaaa gttatactaa actagtaaaa
     1501 tggtttttga cgaatggtga caaagtcatc gtcgctttgt c
//
LOCUS       DATAAS010000475         2493 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5390283, whole genome shotgun sequence.
ACCESSION   DATAAS010000475 DATAAS010000000
VERSION     DATAAS010000475.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2493)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2493)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2493
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5390283"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            539..1063
                     /locus_tag="VHF08_07640"
     CDS             539..1063
                     /locus_tag="VHF08_07640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068562.1"
                     /translation="MDSMARFYYYGISPFEVEAIYSTLKRFFGAVEEDEQLQDNDNSY
                     VSMIDIVFPIPFNESFFQLITLEGWFRMKSLIKEMKRRRGNKGIKIFLRFNGIMQGIN
                     SQLLFSLINKNDRQFEMGLEKIEYMVDIIPVQLDKLPANTELVEYSYDEVTHKWKPHI
                     PESSTNVSINNNIK"
     gene            complement(1146..1586)
                     /locus_tag="VHF08_07645"
     CDS             complement(1146..1586)
                     /locus_tag="VHF08_07645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068563.1"
                     /translation="MNLKESNEIFRKAIIKTYFEPELLNMDYHRSFVKHPLMRDDGLT
                     VEDVLHLYFDIVTGNDYPDGDEWFSIEYLLPHNIKLPDHLKGPDYFTTITVSEDKHFW
                     RHRELIRFKYGKAKKLSESLAFINKKYRELSKALYDASVVNQIK"
     gene            1749..1832
                     /locus_tag="VHF08_07650"
     tRNA            1749..1832
                     /locus_tag="VHF08_07650"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:1783..1785,aa:Ser,seq:gct)
BASE COUNT          883 a          380 c          390 g          840 t
ORIGIN      
        1 gcatttacac cacctattga agtaccagca agaatattga gttttatctt atttttttta
       61 agtgccttga atactacaca accaaaggca cctaacgagc cgcctccttg cattataaga
      121 acattctcaa tagaatcatt atcatcagcc atagtgaaat tttaccccct ttatcatcat
      181 tatattagaa acaataccta tatcagacta catgattatt aataattaga ttattaagaa
      241 tataattgac ctgatataat aaactctatc ttattcttta aaattgcagc aacctgtaag
      301 atatttaaat tgtatctttc ttaagttaat ttttaactgg cacaataaca aataaaaaat
      361 attccgtata acttgggaag agaagataaa gtaaaagaat gaaaaattga atattatgtt
      421 gaagctaata tgtctagaat cgtttttcta tcattctaat attaatatag acagttcatc
      481 tagtaaaagc tttaatcttt atattttaac ttaatggtat cttgggatat gatagagaat
      541 ggatagtatg gccagatttt attattatgg catatcacct tttgaggttg aagccatcta
      601 tagcacactc aagagattct ttggagcagt agaagaagat gaacaactgc aggataacga
      661 taattcatat gttagcatga ttgatattgt gtttccgatt ccattcaatg aatctttttt
      721 tcaactaatt acgctagaag gatggttcag aatgaagagc ttgattaaag aaatgaaaag
      781 aagaagaggt aataaaggca ttaaaatatt cttgcgcttc aatggtatta tgcaaggaat
      841 aaattcgcaa ttattatttt cactaataaa taagaatgat agacagtttg aaatgggtct
      901 tgaaaagatt gaatatatgg ttgacatcat acctgttcaa ttagataaac tacctgctaa
      961 tacagaacta gtagaatatt cttatgatga agttactcac aaatggaagc cgcatattcc
     1021 agaatctagt accaatgtca gcattaataa taatatcaag tagaagtcta attattataa
     1081 acaataatct tagaaataat aagaatatat cataacgata ctagtaaaaa atacttttat
     1141 tataattatt ttatttggtt gacaactgat gcatcataca aagctttact aagttcacgg
     1201 tattttttat ttataaaagc tagtgattct gataatttct tagctttacc atacttgaaa
     1261 cgaattaact ctctgtgtcg ccagaaatgt ttatcttctg aaacagtaat tgtggtaaaa
     1321 tagtcaggac ctttcaaatg gtcgggtaat tttatgttat ggggcaatag atattcaata
     1381 ctgaaccatt catcgccgtc aggataatca tttcctgtga caatgtcaaa ataaagatgt
     1441 aaaacgtctt ctactgttaa accatcgtca cgcattaatg gatgtttaac aaaagatctg
     1501 tgataatcca tatttagtaa ttctggctca aagtaagtct tgattatagc ctttctaaaa
     1561 atctcatttg actccttaag gttcaaagat actatataac caagtctacc tattttataa
     1621 ccttttaatg aaaagtctgt aaaatttaca aatgatctat gggcttgtcg cgttgccaga
     1681 gattatattt ttactctact ttgatccatt ataattaata taatgctact gaaccttact
     1741 gcaatagagc gggggtcgcc tagcctggta gggcgtggga ttgctaatcc catgttcgaa
     1801 agaactcgtg ggctcgaatc ccactccccg cgtcatatat gggaattcct aagcaaacct
     1861 ttttagcttc atagaatgct ccttttcata atagttgaca ctggacagct gtatgcagag
     1921 agtagctcta gattagaaaa aagataattt tatcattaaa agtagctcaa accttatttt
     1981 aataatgcat taaaaaatag cttcagataa tccagaaaat gcaatatatc ccctctttgc
     2041 atgttaaaac gaataaatta taaagttaaa ttctatcaat gttacgactc ggcggttaaa
     2101 aagtgttgga ggttacacac actacattct tggtaaattt gttcttattg tcttatttga
     2161 ataatatctc ggttcttttt ataaagtaga ctataatatt actataatca ttttaggaat
     2221 agttggggag gaccatttgc gaattttact ataaaatttt gtgtacgaga aaactgcagt
     2281 tactgcagta actgcgaagt gactgcagtc atttttgaat taaaagaaga ggatgctcag
     2341 agagaattat gtcttcctgt ccgagataga taattaacgc aaaaacaaaa ttatattatt
     2401 gttatcatat cataaaatga atacttctac tgactcggta tagtaacaaa tcctactaaa
     2461 tagaattaga agattttgct aaagtgcctt tct
//
LOCUS       DATAAS010000476         1504 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_2157576, whole genome shotgun sequence.
ACCESSION   DATAAS010000476 DATAAS010000000
VERSION     DATAAS010000476.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1504)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1504)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1504
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2157576"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            320..469
                     /locus_tag="VHF08_07655"
     CDS             320..469
                     /locus_tag="VHF08_07655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068564.1"
                     /translation="MELVNRDEIVDVIALGDDIHESYFRTLRAYLAALYARYNDSNAL
                     IHIHN"
     gene            1224..>1504
                     /locus_tag="VHF08_07660"
     CDS             1224..>1504
                     /locus_tag="VHF08_07660"
                     /inference="COORDINATES: protein motif:HMM:NF012702.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068565.1"
                     /translation="MQTHNIGNDNIYRRICKEVGLYKKHMIFPIFVQERGGEILSIKA
                     MPEMKITPLSKIISELQKILDAGISSIIIFGIPKQRDEGGGAYASNKNG"
BASE COUNT          528 a          221 c          248 g          507 t
ORIGIN      
        1 gacacgtttc atctattgta tccaggatta aactgagtac atacctatct agtttgtgct
       61 caagtactat aaaattgtta atgcgagttc tttttatttc attaatagtc gaagttgaat
      121 atgttatttt atcgctatac agctctatag taattcattt aaaaaactga gcaaataata
      181 attaaggatg catgtacgca tcttcagttt cgaataatat acaagcaacg tgtagtagat
      241 agtagatgtt tatctaacct aagcatgcta ataattaaga cctttatttt gatcaaaaca
      301 cttcggcaac tacgcagtga tggagttagt taatagagac gaaattgtag atgtaattgc
      361 tttaggagac gatatacacg aatcttactt tagaacactc agggcttatc tcgctgcatt
      421 atatgcaaga tacaacgatt cgaatgctct tattcatatt cataattgac tattaatagc
      481 ataggagtaa atctaaggac tgtctatgat aggtagtcat tataaaacat tgcacacaaa
      541 cacctcaaag aaccttaaag atagcaatag cagagttgcc ttcattcttc gaaaaaatat
      601 tctaattcat cctggtttac tgctgtaaag gcttcatcgt catcctatat ccaaatgatt
      661 gtaatttaga aaacctaact caatgtagtc atcgtagtag gaattatatg ttataaattc
      721 aataatattt tgtactttcg attaaaagta tattcgagtc aaattttttt ccgtaaatgt
      781 atatttaatt ttgatcatac ggttaacttt tgacatcata gagccaatta gaagctcata
      841 agtttttgat tacttttata actcaatcat tatttcagat tcgaattttc ttcatggtat
      901 gcatttgtga atattataat atgactgaat gttggatcgc aacttaactt gagtcattca
      961 aagtcaataa agtgaacatc ttaactttta aaatttttgt aatgaatgta gagatattag
     1021 aagatttata gaaaagaaga attgatactt gcttattatt acaatgacat tgtgaaaaag
     1081 tgaaataaga aaagaaggaa gttaatcaac cttatatttt agtaatagtg ctcgctagaa
     1141 ttatatgtta atttttaact tgcctaacta tagatatcac ggcaagtgtt catataccga
     1201 caacaatatg atttctggta cttgtgcaga cacataacat tggtaatgac aatatatacc
     1261 gtagaatttg caaagaagta ggattatata agaaacacat gatttttccg atttttgttc
     1321 aagaacgcgg aggggaaatt cttagtatca aggcgatgcc tgaaatgaaa ataacgccgt
     1381 tgtcaaaaat tatcagcgaa cttcagaaga tattagatgc tggaatttca tcgataatca
     1441 tctttggcat tcctaagcaa cgggacgaag gtggtggcgc ctatgcttct aacaaaaatg
     1501 gaat
//
LOCUS       DATAAS010000477         3322 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_5392171, whole genome shotgun sequence.
ACCESSION   DATAAS010000477 DATAAS010000000
VERSION     DATAAS010000477.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3322)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3322)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3322
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_5392171"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..330
                     /locus_tag="VHF08_07665"
     CDS             <1..330
                     /locus_tag="VHF08_07665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEX2068566.1"
                     /translation="IARIIGKGGSTISELERMLGIKIDVEVKTPTLGKELDFEVTEAG
                     STVNILVDRSAIGKKVDVYIEDEFILNSQVGKKASIKTDKRSDNGKKIINALLAGNKI
                     SVFQSRD"
     gene            complement(918..1406)
                     /locus_tag="VHF08_07670"
     CDS             complement(918..1406)
                     /locus_tag="VHF08_07670"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEX2068567.1"
                     /translation="MASPLKPGKRPAESQAEMTIIMLPTDANPKGNVFGGVILKHVDL
                     IAGLVAKRHSGRANTVTASIDRMTFLKPVFIGNALILTARLNYVRKSSMEVEVTVMSE
                     DLDDGTRTHAGTAFVTMVALDKYGKPTEVPPIILDSAEEKSHFKEGELRMLSRLKEAG
                     RI"
     gene            complement(1670..2512)
                     /locus_tag="VHF08_07675"
     CDS             complement(1670..2512)
                     /locus_tag="VHF08_07675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine-N1)-methyltransferase"
                     /protein_id="HEX2068568.1"
                     /translation="MRIQEGYYVLLFHSNRKKWLVKVMPQKKLHTHLGVIDVSAVIGM
                     KYGSIIKTSEGKNVYLIEPTVHDFIMKSERKTQIVYPKDFGYIASRTGMQNGSIILEI
                     GTGSAALTTFMASIVKPSGHIYTYDVNADFMAIARRNLEKAGMLQYVTMHQQDPHLGL
                     NIREADVAIVDLGDPWTVVTEVHVSLKGSGAFVAICPTMNQLEKTATVLKQCGYTDVD
                     CVEIMIRNIEAREGMTRPSMRMIGHTTYLIFGRKVEFSNSELLDPSSLSASPQSDDRV
                     RVFY"
     gene            complement(3015..>3322)
                     /locus_tag="VHF08_07680"
     CDS             complement(3015..>3322)
                     /locus_tag="VHF08_07680"
                     /inference="COORDINATES: protein motif:HMM:NF017555.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DALR anticodon-binding domain-containing
                     protein"
                     /protein_id="HEX2068569.1"
                     /translation="KKNIPSENFSLLIQDAEVNLIKTIAKMDLVIEETVRTLNPKLLA
                     RYAYDLATAFNVFYEKIPVLREKDEETMFSRLGLVKAFGVTLNNIFNVLGISALEKM"
BASE COUNT         1097 a          583 c          542 g         1100 t
ORIGIN      
        1 atcgctagga tcattggtaa aggtggatct acaatatccg agttagaaag aatgctaggc
       61 ataaaaattg atgtggaagt taaaactcct actcttggca aagagcttga ttttgaagtc
      121 actgaagctg gatctactgt aaacatattg gtagatagga gtgctattgg gaaaaaagtc
      181 gatgtctata ttgaagatga attcatctta aacagtcaag taggaaagaa agccagtata
      241 aagactgaca agcgatcaga caatggaaag aaaataataa atgcattatt ggctggaaac
      301 aagattagtg ttttccaaag tagagattaa tactgattca tagtcaatgc attattttga
      361 tctttttgtg caaatgatct gtaagcagaa tctcaacaca gatctgagaa gaaaaatata
      421 cgtaatcaag ttagagaatt aatttgacat attgaaatct cagaaatcaa ttgaaaatat
      481 tcgatttgtt tatttagatc aagattatat gttaaataga aaagatattt ttcaaaacat
      541 tcctctggcc tgagaatttc aagaacaata ggtattacat tgtgattttt ttactttaac
      601 cttttacaat cacaatgaca atttttctat tacattttga atagatatgc agagtaaggc
      661 ctaataatta caatgtagat aaatagcgag ctgaaaaata ttgcttctgc gaatttgcgt
      721 tatcagtaag caagtttaga aagatttgct cgtgcactac cttcttattt acaataaaga
      781 atgtataaac cttggcattc acgcttcttc aataaacatg aatgattgac aaacaacaat
      841 tggactttat tgctaatatc ataaaatcaa agtgaagcca ggtaaaacta tatgatattt
      901 aaaataaatg cgtttaatta tattcttccc gcctccttca aacgggaaag catcctcaat
      961 tcaccttctt taaaatggct tttttcttct gcactatcta ggattattgg agggacctct
     1021 gtaggctttc catatttatc gagagcaacc attgttacaa acgcagtacc cgcatgagtt
     1081 cttgtaccat catcaagatc ttcagacatt acggtaacct ctacttccat tgatgactta
     1141 cgtacataat ttaatctggc tgttagaatt aaagcatttc ctatgaatac aggttttaaa
     1201 aatgtcattc tatcaatgct tgcagtaaca gtattggctc ggccagaatg ccttttcgca
     1261 acgagtcctg caataaggtc tacgtgtttt aatataacgc cgccgaaaac attgcctttt
     1321 ggatttgcat cagtgggtaa cataataatt gtcatctctg cttgggattc agctggcctt
     1381 ttccccggtt taagcggcga tgccatccct tatacttgca caaattatca taattaaaca
     1441 ttcataggta tcaaagcaaa cacaaaaagg tctccaatca agttgtttca caattatatc
     1501 ccattgcaat agatcgaaaa ctgatcctgc gttagcaagt gattatgaca acatttaagg
     1561 tagaagaagt attataaaca atattataga tgatatgtgc catttatgta aacagatgag
     1621 gattaaatta aacatataag aatagcatta caataagcca taaattggct tagtagaata
     1681 ctcgaactcg atcgtctgac tgtggtgaag cggataggga cgatggatca agtaattctg
     1741 agttactaaa ttcaactttt cttccgaata ttaagtaagt agtgtgtcct atcattctca
     1801 tcgaaggccg cgtcattcct tctcttgctt ctatattgcg aatcattatt tccacacaat
     1861 caacatcggt atatccgcat tgttttaaca cagttgcagt cttttctagt tgattcattg
     1921 ttgggcaaat cgctacaaat gcgccgcttc cttttaatga aacgtgaacc tccgttacaa
     1981 cagtccaggg atccccaaga tccacaatgg caacatctgc ctctctaatg ttaagtccca
     2041 aatggggatc ctgttggtgc atcgtaacgt attgaagcat tcctgctttc tccagatttc
     2101 ttcttgctat agccataaaa tcagcattga catcgtaagt gtagatatgt ccagatggtt
     2161 ttacgatact agccataaat gttgtaagag cagcgcttcc cgttcctatt tccaatatta
     2221 tagaaccatt ttgcatccct gtcctagaag ctatataacc aaaatccttt ggataaacaa
     2281 tctgtgtctt gcgttcagat ttcattataa agtcatgcac agttggttca ataagatata
     2341 cgttttttcc ttcagacgtt tttataatag agccatattt cattccaata actgctgaaa
     2401 catcgatgac tcctaaatgc gtgtgcaatt tcttttgtgg cataaccttt accaaccatt
     2461 tttttctatt tgaatgaaaa agtaaaacat agtaaccttc ctgaatcctc ataccataat
     2521 agacaaatgg tataccgata aaaatccttg cagagaaaga attgttttgc cgatcttata
     2581 tcattattta agcaacagat tactttgaag aaaaacttga tatcacattc acaatcaata
     2641 tactaaagaa cattctatta tctgatccaa aaaaaagatt gttgatctta gagatacttc
     2701 tggaaatgca aagctattat caattaacaa aaagttgcta atactgctct tttagataac
     2761 gattagtgat atgtaaggtt ttattctcaa gaaggtttgt acaatggtat gttgtataaa
     2821 cttgtataaa cactattttt attaataagt caagtatact ctcaattaac agatagaaat
     2881 tctgatatga cctgtgtttc aaatgtccaa gaatagaata agtgtatgag aagttgcata
     2941 attattagta gataatccat acatatgaac tcctcaagta ttcatgtttt cttattagat
     3001 attgatcgtc ttctttacat cttctctaat gcagaaattc ctagcacatt gaagatattg
     3061 ttcaaagtaa ctccaaatgc ctttacaagt cctaatcgcg aaaacatagt ttcttcatct
     3121 ttttccctta agacaggaat tttttcatag aatacgttaa aggctgtcgc aaggtcataa
     3181 gcatatctag ccaatagttt tggattaagt gttctgactg tttcttctat tactagatcc
     3241 atctttgcaa tcgttttaat taaattaact tctgcgtctt gaatcaagag gctaaagttt
     3301 tctgatggta tgtttttttt cc
//
LOCUS       DATAAS010000478         4262 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6678
            k141_3779448, whole genome shotgun sequence.
ACCESSION   DATAAS010000478 DATAAS010000000
VERSION     DATAAS010000478.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955300
            Sequence Read Archive: SRR12676702
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4262)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4262)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:34:31
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 1,541
            CDSs (total)                      :: 1,515
            Genes (coding)                    :: 1,510
            CDSs (with protein)               :: 1,510
            Genes (RNA)                       :: 26
            rRNAs                             :: 1, 1 (5S, 23S)
            complete rRNAs                    :: 1 (5S)
            partial rRNAs                     :: 1 (23S)
            tRNAs                             :: 23
            ncRNAs                            :: 1
            Pseudo Genes (total)              :: 5
            CDSs (without protein)            :: 5
            Pseudo Genes (ambiguous residues) :: 0 of 5
            Pseudo Genes (frameshifted)       :: 1 of 5
            Pseudo Genes (incomplete)         :: 4 of 5
            Pseudo Genes (internal stop)      :: 1 of 5
            Pseudo Genes (multiple problems)  :: 1 of 5
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4262
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_3779448"
                     /isolate="SMAG_U6678"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="34.05 N 114.3 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            971..1702
                     /locus_tag="VHF08_07685"
     CDS             971..1702
                     /locus_tag="VHF08_07685"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIM barrel protein"
                     /protein_id="HEX2068570.1"
                     /translation="MSNSIHKTLHRPSIDSENKNERRQAVEYTFKTIDYLESAGISRL
                     VLHSFCDLPSFFRLRSEHANRIGYYVGGNTVKIYGFLAPLLKSYRHIRQENLKENFMS
                     SLFEISKYAADKKVSGKSIEIVFEEHFSDAIDYNAISYGRGNLINVVRGIDTAHHLIR
                     TGKNSDLSEISELIHFHAVDTNGLLDDHRTLGKGKVNFKDALSNIIEKKLTNVAVLED
                     GTRRSVLQSKEVLKILIKNAEKKIV"
     gene            complement(1945..2565)
                     /locus_tag="VHF08_07690"
     CDS             complement(1945..2565)
                     /locus_tag="VHF08_07690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068571.1"
                     /translation="MFASDMDSERASSIEDYQNTCVEFINDISRDYKDWVDRYQLPQE
                     ENKTRKAAIDNIVRTTNEWIIKYGDTIKKVDIIMNDGVSKMAENTAGYPFKFEVFVND
                     MVRYTWHPIGRIKVNIKAVPREGKLIRLGKYQRDQLLLINSISTLNYSISQESLKCAD
                     FLNDYVVIDASESKKYDLISITIVTEETEGDHTTESRGNSTLILLT"
     gene            2655..3128
                     /locus_tag="VHF08_07695"
     CDS             2655..3128
                     /locus_tag="VHF08_07695"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068572.1"
                     /translation="MVLFSTLMDELRENIDHNKNILQLILNKDPNKAYQKINEISLFT
                     GSRYKVNLQLHFPDSKKISHIESYGEENIGIVIDKLRKTFPIPRQSIKLKAIEIMGNN
                     VQSQDAYMYEGKEGVKIIFEKGRIEILPGSCHFWCKIDEQVRSYGDWLMKNVYLI"
     gene            complement(3184..3876)
                     /locus_tag="VHF08_07700"
     CDS             complement(3184..3876)
                     /locus_tag="VHF08_07700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068573.1"
                     /translation="MSPRQTVFLIAGIFSIIGIAVSVIIIAIGGGFSGASTSITDPPT
                     DADLWRIGQKVNDGTELNYSLTILSPVSSLIDAEVSINFSEGTSDDWKTNFHVINDTI
                     AEDTTIFLSKKQLLPESSVEEEFKQYFRLIENSILSIRDIAREPKYLVIGAPWDTIFV
                     GASSIPVKVIHKEYIKTSLGNFDSFIIGYKIGSKTSKIWLTHELPLPVKAEVYNSEGE
                     LWYRYRLVGIKL"
     gene            complement(4059..>4262)
                     /locus_tag="VHF08_07705"
     CDS             complement(4059..>4262)
                     /locus_tag="VHF08_07705"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2068574.1"
                     /translation="YDFKVLNSNGTAVLDLKNQFAEDGTAAHPVKFNNTGLAKVQVVI
                     NGVQGVNTGEFVENTEFNIGVAS"
BASE COUNT         1509 a          676 c          694 g         1383 t
ORIGIN      
        1 atgacaaagt tgcagctact actattattg acgctggctc gtatttacgg agcgaagaaa
       61 aatagagggt aaaaaaaaca aaaggattat aacaatatat tatgacatct attctacgat
      121 aaaagaacag ttcatattaa ttaatgatac cttgaaattt ggtcttcaca gctccttgtc
      181 tgtagatgca cccacattcg tgaaattatt atatctaaat tgggtcgatc ttagaagaga
      241 atagatgtta attccctttt aattaattaa gatcatctgc taataatgat tttatattaa
      301 taatcaataa cagagcatat atcaaattga tgagagaatt atttgttact taaatccgac
      361 cgcatataca tcataatata aataattacg cagatctaat tgttagggga tgttgaagtc
      421 taatcatcaa aaggctatta caatagtgca acaactcata aacataaaat aaattgtttg
      481 ataagagcaa tacaagaggc ttgtatgaaa taaaaaatgt tataatgata aaaaattaaa
      541 gccagtgcta aaagttagca caacttctaa tgtgtcttaa gaactctaaa ttcatgttat
      601 cataactacc ataatattta agaaaaatta ggtacttaaa gtggctcaga attgacaatt
      661 caaattatca agagcaaata tggctttatc ttaaagtgca attgtttata tcaaatatgg
      721 tctcatatat gagcgagaac aaaattactt gataagttca aagtcatttt aacggtgtgt
      781 aattaacatg gaaattaaaa tagttacatc agtagctcca tatatcgcaa atagtgcatc
      841 tcaggctatt gaattggcac accaagatgg ctttgcaggt attgagctca acgaagatca
      901 tttacattgt ctggtgtaaa gaaagccaaa ctgccttcga ttaatcaaag attatagtac
      961 agataagcgt atgagtaatt ctatacacaa aacgcttcat agaccaagca ttgattctga
     1021 aaacaaaaat gagaggaggc aagcagttga atatacattt aaaacaatag attatctaga
     1081 atcagcaggg atttctagat tagtgttgca tagtttttgt gatttgcctt ctttctttag
     1141 attaagatct gagcatgcca atagaatagg atattatgtt ggaggtaaca ctgttaaaat
     1201 atacggattt cttgctcccc ttttgaagtc atatagacat ataaggcaag aaaatttaaa
     1261 agaaaatttt atgagttctc tttttgaaat atcaaaatac gctgcagata aaaaagtaag
     1321 tggcaaatca atagaaattg tttttgaaga gcatttttct gatgcaatag attataatgc
     1381 catctcatat ggcagaggaa atttaattaa tgtagtaaga ggcattgata ctgcccatca
     1441 cttgattaga acaggaaaaa actcggacct atcagaaata tcagagttaa ttcattttca
     1501 tgcagttgat acaaatggac tattagatga tcatagaact cttggcaaag gcaaggtaaa
     1561 ctttaaagat gctctatcta atattataga aaaaaaattg acaaatgttg cggtgttaga
     1621 agacggcact agaaggagtg tattacaatc caaagaagta ttaaagatat taataaagaa
     1681 tgcagagaaa aaaattgtat agttgtaatc agattttgtg ctgtcacttt catcaaacta
     1741 atacaattac aaatcaaatc aaataatgtg ccactgctct ttatattaat ttaaacaacc
     1801 gctttgctta atacattatc acaaaaggca gtttatataa aagagtaata cacagttttg
     1861 tgacatctag cagtcttgga ttatccaaaa aatcgcaggt gctataatca tattttgtaa
     1921 taaatatgaa aggagtatgt cttcttatgt taataaaatt agagttgaat tacctctgct
     1981 ttcagttgta tggtctcctt cagtctcttc tgtgactatg gttatggaaa taagatcata
     2041 ttttttgctc tcactggcgt caatgacaac ataatcatta aggaagtcag cacacttcaa
     2101 actctcttga ctgattgaat aattcaaagt agaaatagaa ttgattaata ataactgatc
     2161 tctttgatat ttacctaatc gaataagttt tccttctctt ggaactgctt taatatttac
     2221 tttgattctt ccaatagggt gccaggtata gcgtaccata tcgttaacaa atacttcaaa
     2281 cttgaaagga tagcctgcag tattctctgc cattttgctg acaccatcat tcataattat
     2341 atcaactttc ttgatagtat caccatattt gataatccat tcatttgtag ttctaacaat
     2401 attgtctata gcggcttttc ttgtcttatt ctcttcttga ggtaattgat atctgtctac
     2461 ccaatccttg taatccctac taatatcatt tataaattcc acacatgtgt tttgataatc
     2521 ttctatgctg ctagctctct cagaatccat gtctgaagca aacatagaat gcatttctag
     2581 caacccgaat aaaaagatga atttaggtta gtaaatatat aattcaataa taaaataata
     2641 attagaacaa gaaaatggtg cttttttcta cgttaatgga tgaattaaga gaaaacattg
     2701 atcacaataa aaatatttta caattgattt taaataaaga tcccaacaag gcctatcaaa
     2761 aaatcaatga aatatctctt tttacaggat caaggtataa agtaaatttg caattacatt
     2821 ttcctgattc aaaaaaaatt tcacatatag aatcttatgg agaggaaaat ataggaatag
     2881 taatagataa acttcgtaaa acatttccta tcccccgcca aagtatcaag ttgaaagcca
     2941 tagaaataat gggcaacaat gtccaatctc aggatgccta tatgtatgaa ggtaaggaag
     3001 gagtcaagat aatattcgaa aaaggtagga tagaaatact tcctggctct tgtcatttct
     3061 ggtgtaagat agatgaacaa gtgagatcct atggcgactg gttgatgaag aatgtttatc
     3121 ttatctgagt agactctctt ttaatttacg attgcaggca tacaagttgt agcagacttt
     3181 atgttatagt tttatgccaa cgagtctata tctataccaa agttcacctt cagagttgta
     3241 aacttctgcc ttcaccggta aaggaagttc atgagttaac caaattttac ttgttttaga
     3301 acctatttta tatccaataa taaaggaatc aaaatttcca agacttgtct tgatatattc
     3361 tttatgtatt actttgacag gtatcgatga tgcacctacg aaaatggtat cccagggggc
     3421 acctataacc aaatattttg gttctcttgc gatgtctctt atagacaaaa tagagttctc
     3481 tataagtcta aaatattgct taaattcttc ttctacgcta ctctctggaa gtaactgctt
     3541 ttttgaaaga aaaatggtgg tatcctcggc tattgtgtca ttgattacat ggaaattcgt
     3601 tttccaatca tcacttgtac cttcagaaaa attgatagat acctcggcat caataagtga
     3661 actaactggg ctaagtatcg tcaaagagta atttagctct gttccatcat taaccttttg
     3721 accaattctc catagatccg catctgttgg tggatctgta atggaagtgc tcgcccctga
     3781 aaatccacct ccaatcgcaa tgataataac actcactgct atgccaatta tagagaaaat
     3841 tcctgctatt aaaaaaactg tttgtctagg agacactcat tttgagtgat aattatggat
     3901 tatttaagcg taaagaaaag aaaaataaga gaatgattgg atatttctga tttcagctat
     3961 atagtaagga gggcctcatt agacgtgctg ttttgaagac caccagtctt cagattatta
     4021 ttatgattaa ccattaacct cattgtactc attggaaatt atgatgctac gccaatatta
     4081 aattctgtgt tttctacaaa ttcgcccgta ttgacacctt gaacaccgtt tataacaact
     4141 tgaactttag ctagaccagt attgttaaat ttgacaggat gagcagccgt gccatcctcg
     4201 gcaaactggt tcttgagatc taaaacagcg gtgccgtttg aatttaatac cttgaaatcg
     4261 ta
//
