LOCUS       DATABJ010000001         3652 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1528075, whole genome shotgun sequence.
ACCESSION   DATABJ010000001 DATABJ010000000
VERSION     DATABJ010000001.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3652)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3652)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3652
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1528075"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..761)
                     /locus_tag="VHF44_00005"
     CDS             complement(<1..761)
                     /locus_tag="VHF44_00005"
                     /inference="COORDINATES: protein motif:HMM:NF014408.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2123963.1"
                     /translation="MNYSPLTENDKEEMLKSIGVRSINDLIMDLKPPLNEKLDLSEPM
                     SELELMEHMRIISQKNKIMKYFIGAGSYNHYIPSAINHLLMRGEFLTGYTPYQAEMNQ
                     GTLHTMYEFQSFICLLTGMDIANASMYEGSSALAEAVLLSSSYNGRNCIFIKNGLNPR
                     YLEVLKTYCEGADLKIVNEIDHNTACVIAQNPDFYGNIENLQYMSEQAHKVGALFITC
                     VVEPTSLAILEPPGNYGADIVVGEGQSFGIPVNFGG"
     gene            complement(761..1186)
                     /gene="gcvH"
                     /locus_tag="VHF44_00010"
     CDS             complement(761..1186)
                     /gene="gcvH"
                     /locus_tag="VHF44_00010"
                     /inference="COORDINATES: protein motif:HMM:NF002270.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HEX2123964.1"
                     /translation="MIENIRFTKEHEWIIIKEGIAIMGISDFAQRQLGDIVSIELPKV
                     GTIFRHMQSMAIIDSVKASSDIYCAMSGEVVEVNEDLLEHPEWINQSPYKLGWIVKIK
                     PSNMMEFNSLMTNEQYNKFIGEIEEEGEEKDQRGGRYQL"
     gene            complement(1229..2308)
                     /gene="gcvT"
                     /locus_tag="VHF44_00015"
     CDS             complement(1229..2308)
                     /gene="gcvT"
                     /locus_tag="VHF44_00015"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: protein motif:HMM:NF001567.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004047 - aminomethyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0019464 - glycine decarboxylation via
                     glycine cleavage system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HEX2123965.1"
                     /translation="MKTPFYDIHRSSGAKMLDFHGWKMPLHYSSGIIDEHINTRTNVS
                     LFDVSHMGRFEVKGPDAYDCLQTLLTNDVSKLNNHQALYSTICYDNGRIIDDLIIYMI
                     NREKFLIVVNASNREKDLEWIIKHSNNSATVEDISDKIALLALQGPLAQNLLEKAAMV
                     GIDLNQLKPFDLNITNIFGIECMISRTGYTGEDGFELFFDSSKIDIWDKLIQLGSPTS
                     NIKPAGLGARDTLRLEAGLMLYGNDIDENTTPLEVPLKWTVKFEKKEFIGKKALTTQQ
                     INRKLVGFEVIEKRVARHGNEVLLNSQKVGFVTSGSFSPTLKKSIGFCFVPTYVLPNQ
                     LIEINIGGKLYKAKVLSSTRFYKRK"
     gene            2375..3280
                     /gene="lipA"
                     /locus_tag="VHF44_00020"
     CDS             2375..3280
                     /gene="lipA"
                     /locus_tag="VHF44_00020"
                     /EC_number="2.8.1.8"
                     /inference="COORDINATES: protein motif:HMM:TIGR00510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016992 - lipoate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009107 - lipoate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl synthase"
                     /protein_id="HEX2123966.1"
                     /translation="MFLVKRIKMELIKKPAWLRVRAPAGENYTKVKQSLRSLNLHTVC
                     EEARCPNISECWGTGTATIMIMGDICSRGCRFCAVNSGKPVLLDTGEPERVAKAIKEW
                     GLRYVVITSVCRDDLEDGGAEHISKTIKAIKLLCPTIIVESLIPDFRGDDCSIIKIVK
                     SEPEVISHNIETVLRLTPKVRDARASYEQSLLVLKKIKDINSLIYTKSSIMLGLGESE
                     EEVIQTIMDLRSVGVSILTIGQYLQPTPKHLPLIEFIAPEKFNWFREIAERMGFVYVA
                     SGPLVRSSYRAGEFFVKKNYNNNKI"
BASE COUNT         1155 a          667 c          603 g         1227 t
ORIGIN      
        1 cctccaaagt ttactggaat accaaaggac tgtccttcac cgactactat atctgcacca
       61 taatttcctg gtggctctaa tattgcaaga gaggttggct caacaacaca tgtaataaag
      121 agtgcaccca ctttatgtgc ctgttctgac atatactgta aattctcaat atttccatag
      181 aaatcagggt tctgagcaat cacgcaagct gtattatgat caatctcatt tacaattttg
      241 agatctgctc cttcacaata tgtttttaaa acttccaaat atcgaggatt gagcccattc
      301 tttataaaaa tgcaatttct tccattataa gatgaagaga gcaatacggc ttctgccaat
      361 gcagatgaac cttcatacat agaagcatta gctatatcca tgcctgtaag aagacatatg
      421 aatgattgga attcgtacat ggtatgtaga gttccttgat tcatttctgc ttggtatggg
      481 gtatatcctg ttaggaattc tcccctcatt agcaaatggt ttattgcaga cggaatataa
      541 tgattgtaag atccagcccc aataaagtat ttcatgatct tattcttttg tgatataatt
      601 ctcatatgct ccatgagttc aagctcgctc attggctcag agagatccag tttttcatta
      661 agaggcggct ttaaatccat gattaaatca tttatcgatc ttactccaat actttttaac
      721 atctcttctt tatcattttc agttaatggt gagtaattca ttataattga tatctgcccc
      781 ccctttgatc tttttcttct ccctcttctt caatttcacc aatgaacttg ttatattgct
      841 catttgtcat caaactgtta aattccatca tatttgatgg ttttattttt acgatccaac
      901 ctaatttata tggagactga tttatccact caggatgctc aagcaagtcc tcgttaacct
      961 ccacaacttc tccactcatg gcacaatata tatcagaaga agcctttact gaatcaatta
     1021 tagccattga ttgcatatgt ctaaatatag taccaacctt aggcaattct atagaaacta
     1081 tatcaccaag ttgtctctga gcaaagtctg agattcccat aatagctatt ccttccttga
     1141 ttataatcca ttcgtgttct tttgtaaatc ttatattctc aatcacaaag atctattttt
     1201 aatgttatgc aacccataaa aaattttttt attttcgctt atagaatcgt gtactactaa
     1261 gaacttttgc tttatacaat ttcccgccaa tattaatttc aattaattga ttgggcaata
     1321 cgtacgttgg tacaaaacaa aagccaatag acttttttaa agttggtgaa aagcttccac
     1381 ttgtcacaaa accaaccttt tggctattca ataagacttc atttccatgt ctagccaccc
     1441 ttttttctat aacctcgaat cccacaagct ttctatttat ctgctgggtt gtcaaagctt
     1501 tttttccaat gaactctttc ttttcaaatt ttactgtcca tttaagtggg acctctaaag
     1561 gagtagtatt ttcatctatg tcattcccat aaagcatcaa acccgcttct agtctgagtg
     1621 tatctctggc tcccaaacca gctggtttaa tgttagatgt gggggaacct aactgtatga
     1681 gcttatccca aatgtctatt tttgaagaat caaagaatag ctcaaaacca tcttctcctg
     1741 tataaccggt ccttgatatc atgcattcta ttccaaaaat atttgtaata ttaagatcaa
     1801 atggctttaa ctgattcagg tctataccaa ccattgctgc tttctctagc agattttgag
     1861 caagaggacc ttggagtgct agaagagcaa ttttatcact gatatcttca acagtagctg
     1921 agttgttcga atgcttaata atccattcta gatccttttc tctatttgaa gcattaacta
     1981 caataaggaa tttctccctg ttaatcatgt atatgattaa atcatctatt attctaccat
     2041 tatcataaca tatggtagaa tataacgcct gatggttgtt taattttgag acgtcattag
     2101 taagtaaagt ttgtagacaa tcataggcgt cggggccttt aacttcaaaa cgacccatat
     2161 gtgagacatc aaataaacta acgtttgttc tagtattgat gtgctcatcg attattccag
     2221 aagaatagtg taaaggcatt ttccatccat gaaagtctag catttttgct ccagaggatc
     2281 tatgaatatc ataaaagggt gttttcatta tatgtaagcc agcaaaatat aattaacgag
     2341 tgatgagtat taacccttat tattataatg gctgttgttc ttagttaaaa ggataaaaat
     2401 ggaactaata aaaaaaccag cgtggcttag agtaagagct cctgcaggag aaaactatac
     2461 aaaggtcaaa caatcactta ggtccctaaa tcttcacacc gtttgtgaag aagcaagatg
     2521 tcctaatata tcagagtgtt ggggaacagg aacagctact attatgatca tgggagacat
     2581 ttgtagtaga ggatgtagat tttgtgctgt taatagcggt aaaccagttt tgcttgatac
     2641 aggtgaaccc gaaagagtcg ctaaggcaat taaagaatgg ggattaagat atgtagtaat
     2701 tacttctgta tgtagagatg atttagagga tggaggagca gaacacatat ctaagacaat
     2761 caaagcaata aaacttctat gccctacaat aatagtggaa tcactgatcc ctgacttcag
     2821 gggagatgac tgttcgataa taaagatagt taaatctgaa ccggaagtca taagtcataa
     2881 catcgaaacc gtacttagac ttacacctaa agttcgagat gctagagctt catatgaaca
     2941 atcactctta gttcttaaaa aaattaagga tatcaattcg ttgatttata caaaatcttc
     3001 tataatgcta ggtcttggag aatcagaaga agaagttatt cagacaataa tggatctgag
     3061 atcagttgga gtaagtatat tgactatagg tcaatacctt caaccaactc ctaagcattt
     3121 gccacttatc gaatttattg cgccagaaaa atttaattgg tttagagaaa ttgcagagcg
     3181 aatgggattt gtttacgtag cctctggtcc acttgttaga agttcttata gagcaggaga
     3241 attttttgtg aaaaaaaatt ataataataa taagatctaa tgtggtcata ttacaatttg
     3301 cagaatattc tatctttgta ttcataatct acaaaggata acgctgaatt gcgaacaagg
     3361 aattttcgca tattaacaca aaactgcaat tgttaacaga aaaacgtcat ttggcaactt
     3421 tttgttagca tttttgttaa caatttatga tctttgtaca ttacatgaat attgtttttg
     3481 ttaacaattc gttcaaattt atgcgtcaaa tctccgatta tccccatcgc gatcaataag
     3541 tggactgggt gggattccaa cccatttgtt ttaattctta ttctgtgata cctactcttc
     3601 gtgcaaattg agatgagcta aaaattgcat gaggcattgc attgtagctg ac
//
LOCUS       DATABJ010000002         1723 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_4774, whole genome shotgun sequence.
ACCESSION   DATABJ010000002 DATABJ010000000
VERSION     DATABJ010000002.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1723
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_4774"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(246..986)
                     /gene="psmA"
                     /locus_tag="VHF44_00025"
     CDS             complement(246..986)
                     /gene="psmA"
                     /locus_tag="VHF44_00025"
                     /EC_number="3.4.25.1"
                     /inference="COORDINATES: protein motif:HMM:NF003075.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000502 - proteasome complex [Evidence
                     IEA];
                     GO_function: GO:0004175 - endopeptidase activity [Evidence
                     IEA];
                     GO_process: GO:0010498 - proteasomal protein catabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal proteasome endopeptidase complex
                     subunit alpha"
                     /protein_id="HEX2123967.1"
                     /translation="MLPAAAGYDRAITVFSPDGRLYQVEYAIETVRRGTLAIGIKSRD
                     GVILAVEEKARKLQISNVTQKIFQVDDHIGVAAAGYIPDARTQVDHARFFAQSNRLIY
                     DEPVDVEGVAKNIADMAQQFTQYAGVRPFGVALILAGVDKNGASLYLTDPSGTYIGYD
                     AVAIGAGSDQVTEFLEKGYKNNISMEEAGALAIESIYLVSEDKTGTRHVKMAIIDNNT
                     KIMRKVEEDEIDKYASIVKEGADKRTSP"
     gene            1084..1503
                     /locus_tag="VHF44_00030"
     CDS             1084..1503
                     /locus_tag="VHF44_00030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF371 domain-containing protein"
                     /protein_id="HEX2123968.1"
                     /translation="MVEDEVIFYGHPNVLSLHPRALEITKNTELTLRGDCIIGVGANK
                     ACKDLDPALQRLLKNDNSVVRLSIIAGNRSCTLNGFGSSRLLLLNSQDIVIRKTNFAC
                     SRTLCLNTDKSSLDIPREIVRLLQNPKTRAILNINIE"
BASE COUNT          513 a          343 c          272 g          595 t
ORIGIN      
        1 ttctaaatat ctttattgca tctggtatgc catacataaa acaaccaggg caattcactt
       61 ggaatacttc tactaggata acgttattaa tctctttgtc aatattcgtt ggcttaccct
      121 gaatccattc cgataccttt aaatttggtg ctttatcgcc aatcctgata gccatacgta
      181 aaaaaatagc ttatcattat ttaaaccaat gctacataaa catattctaa atattgaaga
      241 aaaaattatg gagatgttct tttatctgct ccttctttaa cgattgatgc atacttgtct
      301 atttcatctt cttctacctt ccgcattatt tttgtattat tatcaataat cgccattttt
      361 acatgcctcg ttccagtctt atcttcactt acaagataga tcgactctat tgctagtgca
      421 ccggcttctt ccatcgatat attattttta taaccctttt ctaagaattc tgtgacttga
      481 tcgcttcctg cacctattgc cacggcatca tatccaatgt aagtgccgct tggatcagtt
      541 agataaagag aggctccatt tttatcaaca cctgcaagaa tcaaggcaac accaaatggt
      601 ctaacacctg cgtattgagt aaattgttga gccatatctg caatattttt tgctactccc
      661 tcgacatcta ctggctcatc atagattagt cgattacttt gtgcgaaaaa tcttgcatgg
      721 tcaacctgtg ttctagcatc tggaatatat cctgctgcgg cgactccaat atgatcatcg
      781 acttggaaaa ttttttgtgt aacatttgat atctgcaact ttctagcttt ttcttcaact
      841 gctagaataa caccatctct actttttatt ccaatagcta atgtccctct tctgacggtt
      901 tcaatggcat attcaacctg atataatctc ccgtcaggtg agaaaacagt aatagctcgg
      961 tcatatcctg ctgctgctgg taacaattca tttttaacta ctttgtaacg tttaatttaa
     1021 atttacctta tggctttttc gccgctaggt ttaattctag caaccagcag atagccaatt
     1081 gccatggtcg aggacgaagt tattttctat ggacatccaa acgtcctatc tcttcatcct
     1141 cgtgcgttag aaattacgaa gaatacagaa cttacattaa gaggagactg tataatcggc
     1201 gtaggggcaa ataaagcttg taaagattta gatcctgcct tgcaaaggct attgaagaat
     1261 gataattcgg ttgtaagact ttcaataatt gctggcaatc gatcctgtac acttaacgga
     1321 tttggaagta gtagacttct gctattaaac tctcaagata tagtaattag aaaaaccaat
     1381 tttgcttgtt caagaacgct atgtctgaat acggataaat cttctttaga tatacctaga
     1441 gaaatagtac gactgttaca gaatcccaag acaagggcta ttttaaatat aaatattgaa
     1501 taatatcaga gagattgtat atttaagatg tccgcaatat gaaaagtagt ccgattaatc
     1561 cttgacgttt tagtctaaat aactttaatt atgctgtagg ttatgacaga ttagtgtaaa
     1621 tcgtctttcg atacataggc cttttaaaag ccgtcgcact tcatgacatt gttcttgcta
     1681 catattagaa tttttccccg ctaatttttt cataagcaaa aat
//
LOCUS       DATABJ010000003         2664 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1966050, whole genome shotgun sequence.
ACCESSION   DATABJ010000003 DATABJ010000000
VERSION     DATABJ010000003.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2664)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2664)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2664
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1966050"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..375
                     /locus_tag="VHF44_00035"
     CDS             <1..375
                     /locus_tag="VHF44_00035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX2123969.1"
                     /translation="TTELFAKAKEYEKNGVMRRFAAILRHRDAGFSANGMVVWQVPDE
                     KIDEIGYKLAAFPQVSHCYRRPVYSDWQFNLFSMIHARTLEAAEKIAVEMSEIVEIKD
                     YKILFSSREFKKERVKYFEESN"
     gene            complement(919..1374)
                     /locus_tag="VHF44_00040"
     CDS             complement(919..1374)
                     /locus_tag="VHF44_00040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2123970.1"
                     /translation="MPALLIISLHSVIFMINSEKRNLAPRIMVVDDEADITLQLSVVL
                     EENGFKVDPFNDALLALENFKPDLYDLLILDIKMPKMNGFELYKQIKKIDAKVKTMFL
                     TALTELQEYEVFRKEVFPKLGERYFVPKPIENEDLIKRVNTILSQIKNN"
     gene            complement(1398..2429)
                     /locus_tag="VHF44_00045"
     CDS             complement(1398..2429)
                     /locus_tag="VHF44_00045"
                     /EC_number="1.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEX2123971.1"
                     /translation="MKYRKLGRSGIKVSEIGFGAWTIGLDWWGKKIDDDEAIRMLKRA
                     YDLGINFYETADMYGNGKSEKIVSQAFKDMRDEVVYSTKWGYDMYDAIQIGHNELPQK
                     HNPEFLKYALQQSLNRLQTDYIDVYSLHNPKMDAIKNDSLFISLDKLVQSTKIKSHGV
                     ALGPAIGWKDEGLLAIEKRNITCLQTVYNVLEQDPGRAFLNAVRKNNNDVGIMVRVPD
                     ASGVLTGKVNEKTAFDKNDHRSNRKKEWILEAMQKIEKMKPIANARGWSISQLAIKFI
                     LSQKEISIVLPTVIDVGEIESFAEMADGNYLNENEMAEIIDLYNNNFYIQQQSSYSSV
                     ATSSSHSKL"
     gene            complement(2433..>2664)
                     /locus_tag="VHF44_00050"
     CDS             complement(2433..>2664)
                     /locus_tag="VHF44_00050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2123972.1"
                     /translation="VYKMNNPLEVDIKHEWAGCRSWVSIEVEFPQLIANSTNSTDNND
                     EPLYLPHVQQEQPVIDNLKFNQIASEIKEVLN"
BASE COUNT          818 a          496 c          374 g          976 t
ORIGIN      
        1 acgacagaac tctttgcaaa ggctaaggaa tatgaaaaaa atggcgtaat gcgccgattc
       61 gcagcaatat tgcgccatcg agacgcaggt ttttctgcaa atggtatggt agtatggcag
      121 gtgcctgatg agaagatcga tgaaattggc tataaacttg cagcttttcc acaagtaagt
      181 cactgctatc gtagaccagt atactctgac tggcaattca atctatttag catgattcat
      241 gcccgaacat tggaagcagc agaaaaaatt gcagttgaaa tgtcagaaat tgttgaaatt
      301 aaagactata aaattctatt tagttctagg gaattcaaga aagaacgagt aaagtatttc
      361 gaagaaagta actaatatac acagtctata ttttctcatt ctatttgatt cttattgata
      421 tatattgttt catttcatct tcttctttta caatatttaa taatctcatt cattcttcaa
      481 ttctttctct ttttcatact cacattagac cagttttaaa ttcaatatat tctaatcctg
      541 tcataatcaa atattacctt catcatctat gacagaaatt atcttttagc taacatttat
      601 tgtgcccaaa tttctcattg ccaggtatta taggttagta atctatcaca caaatattac
      661 atccataaga tattcattat tgcgataagc attgagttat aaatagcgat aaataaattt
      721 gtccttttta ttaggattta ctacattatg aattctttat taaaaaatat atatacttct
      781 catctaaatt ctatgtttat ataattaaaa taactttctg ttaaataata gtagtattgt
      841 caaaggtgat gtcaatacaa tacacttcaa aatacaaata aggcaaggaa aaattgaatc
      901 tattttttct gagatatgct aattattttt aatttggctc aatattgtat ttactcgttt
      961 tattagatct tcattctcaa tcggttttgg aacaaagtat ctttcgccta atttaggaaa
     1021 cacttctttt ctaaatacct catattcctg caattcagtc aaagctgtca aaaacattgt
     1081 cttgaccttg gcatctattt tttttatttg cttatataat tcaaatccat tcatttttgg
     1141 cattttgata tcgagaatta ataagtcata caaatcaggt ttaaaatttt ctaatgccaa
     1201 aagagcatca ttaaatggat caactttgaa tccattctct tctaaaacaa cgctcaattg
     1261 tagggtaata tccgcctcat catcaacaac cataattcga ggagccaaat ttcttttttc
     1321 gctattgatc ataaaaatta cagaatgtaa gcttattatt aataatgcag gcaatagtat
     1381 ggcattcttc tattccttca taatttagaa tgagaggacg aagttgcaac agaagagtaa
     1441 gaagattgtt gctgaatata aaagttatta ttataaagat cgattatctc tgccatttcg
     1501 ttttcattta gataattgcc atcggccatt tccgcaaagc tttcaatctc cccaacatca
     1561 ataacggtgg gtaacactat tgatatttct ttttgagaca gtatgaattt gattgccagc
     1621 tgagatatac tccatcctct tgcatttgca attggtttca ttttttctat tttttgcata
     1681 gcttctagaa tccattcttt ctttctgttg cttctatggt cattcttatc aaatgcagtt
     1741 ttttcattaa ccttgccagt taatactcct gaagcatcag gaactctaac cataattccc
     1801 acatcattat tgttctttct tactgcattt agaaatgccc ttccgggatc ctgttccaaa
     1861 acattgtaga ctgtttgaag acatgtaatg tttcgttttt ctattgccaa aagtccttca
     1921 tccttccaac cgatagcagg acctaatgct actccatgac ttttgatctt tgtactttgt
     1981 actaacttgt cgagtgagat aaacaaacta tcatttttaa tagcatccat ttttggattg
     2041 tgaaggctat aaacatcaat ataatcagtt tgcaaacggt tgaggctctg ctgcaatgca
     2101 tactttaaaa attcagggtt atgtttttgt ggtagctcat tatggccaat ctgtatagca
     2161 tcgtacatat cataacccca ttttgtggaa tagactactt catcacgcat atctttgaat
     2221 gcctgtgaga ctattttttc acttttacca tttccataca tatctgctgt ttcgtaaaaa
     2281 ttgataccta gatcataagc acgttttaac atcctgatgg cttcgtcgtc atctatcttc
     2341 ttaccccacc aatccagacc tatcgtccag gctccaaacc ctatttcact taccttaatt
     2401 ccacttcttc ctaattttcg atatttcata tcttaattta aaacctcttt aatctcggat
     2461 gcgatctgat tgaatttcaa attatctata actggttgtt cttgttgcac gtgtggtaga
     2521 tacagtggct cgtcattatt gtctgtacta ttggtactgt tagcaatcaa ctgtggaaat
     2581 tcaacttcaa tcgaaaccca tgacctgcag ccagcccatt catgtttaat atcaacctct
     2641 aaagggttat tcattttata aact
//
LOCUS       DATABJ010000004         9246 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1533501, whole genome shotgun sequence.
ACCESSION   DATABJ010000004 DATABJ010000000
VERSION     DATABJ010000004.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 9246)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9246)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9246
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1533501"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..582
                     /locus_tag="VHF44_00055"
     CDS             <1..582
                     /locus_tag="VHF44_00055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-8X methylmutase"
                     /protein_id="HEX2123973.1"
                     /translation="DAEIGSHGYNELEWPIVRRVIHATADFDFARKGKIIFHNNPIGS
                     AFNAIKNKCNIVTDVDMVLSALNKKSISDLGLKSACYISDKTLSDKARLYNKTRSEMA
                     MRYAADEINGGIVAIGNAPTALYEIIKMVRENVTKPALIVGIPVGFVSASESKDELRK
                     IDIPFISNIGRKGGSPAASSIVNAIMLLYKSKL"
     gene            961..1404
                     /locus_tag="VHF44_00060"
     CDS             961..1404
                     /locus_tag="VHF44_00060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC domain-containing protein"
                     /protein_id="HEX2123974.1"
                     /translation="MKEIKTQLEIMASSKRVWQVLTDFPNYSKWNPVIVQLKGEAKVT
                     TKLEIHVRTKGGKTRIYKPTITKVEPNHELRWFGKSIFPGMLNGERIFTIDSLGINNV
                     LFFHRQIFTGLGVYIAGNRLDRDIRGTLNEMNVALKKQAEQLPVS"
     gene            complement(1460..1846)
                     /locus_tag="VHF44_00065"
     CDS             complement(1460..1846)
                     /locus_tag="VHF44_00065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2123975.1"
                     /translation="MTSANNFALEQGKSAKAIDWMNSYAKMKNRKLEIRSENYSLSTL
                     KFGNFDAISWNGDWSAARLIIVKASSKLNMKVIEAGYHKKGSLISSLLGVSDEIAKVY
                     SGGKLVGNIVLKSKSGKWIVKSEKTI"
     gene            2014..2358
                     /gene="trxA"
                     /locus_tag="VHF44_00070"
     CDS             2014..2358
                     /gene="trxA"
                     /locus_tag="VHF44_00070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEX2123976.1"
                     /translation="MESKSENVIHVTSKSWESVVINSDMPVLVDFWAEWCGPCRMVGP
                     AVEQLSQTMSDKIRVAKLNVDQNQEIAMKYGIRSIPSLLLFKAGKEIARTVGASSKES
                     YQKFIEQSLSKA"
     gene            2456..5194
                     /gene="alaS"
                     /locus_tag="VHF44_00075"
     CDS             2456..5194
                     /gene="alaS"
                     /locus_tag="VHF44_00075"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEX2123977.1"
                     /translation="MSKKELANLFSSNPDRYYRVSLFDRKGFTRQKCNICGKFFWSMI
                     ERTFCPDHENYSFIGKPPTRKRLDYVNAWKEVREYFSSNSHSIIRRYPVVCRWRDDLY
                     FTIASIVDFQRVMGSKVVFELPSNPLIVPQMCLRFNDIENVGLSGRHYTSFCMIGQTC
                     NADAPGGYWKDKCIDLDYGMLTNALGILPEEITFVEDVWMGAGAFGYSLEYFVSGLEL
                     GNAVFTEFEGNENNYRVLPNKIIDMGAGLERFSWITMGTPTSYDCSFGPVVQKLLNKV
                     SASEDLAFLSRYFEAASSKVEHMGRDIKELKSSIAKELKISEEQLVKVITPYEAIYTI
                     ADHSRTLLFAISDGALPSNVGGGYNLRVILRRALSISDRLGWNIKLEDVADLHIDYLK
                     QMYPELEDYREDVRTILQIESSRYIGSRERMDSIAASIKNNKKKIIVEDLIRMYESDG
                     VTPDFLMESGAIESIPSTFYTKLAELHTIQASTQAQQPIYGLENLAPTRLLYYEDESI
                     RKFTAKVLKIIDNKYVILDQTAFYPRGGGQEPDNGEIDDIKVIEVIKQSDIIIHKLKD
                     AREKDIVEGKTVYATINGRRRDLITKHHTATHILNTSSRSNLGSWVWQNSAFKDEGYA
                     RLDITHHSALNREEIERIEKTANNVIRQNLPVKIKIYDRGDAEQQYSFRIYQGGVVPT
                     NNIRIVNIEGWDIEACGGTHIGQTGEIGLIKIIKAERIQDGIVRLEFVAGEAALNYIQ
                     KQENQLTVIAQSLGSSREKVVETFHKGVQESEETNKKIKIIMRKIAPLIAKSISAEAS
                     ELVPHGIKLYNVYDEELDDEYYIAIGEKSIEIDPSLIYIALISKGQGIRVIVFVGEKA
                     RGKNIKAGLIAKQLSSKLGGSGGGDERFGQGGGKFKSKIQEALLSAEESVMKTISG"
     gene            5204..8272
                     /gene="leuS"
                     /locus_tag="VHF44_00080"
     CDS             5204..8272
                     /gene="leuS"
                     /locus_tag="VHF44_00080"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004823 - leucine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006429 - leucyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEX2123978.1"
                     /translation="MINTNNRYNNNNNDNIDWSLIEKKWRHRWDEQQIFNSDPDFSKK
                     KYFITVAYPYPNSPQHIGHGRTYTLADAHARYMRMKGYNVLFPMGFHYTGTPILGMSR
                     RIASGDKELLETFQYIYHISEDVIKSFVEPIKIASYFHNEIKLGMKEMGYSIDWRREF
                     TTIDKLYSKFISWQFNTLRKKGLIVQGSHPVGWCPKDQNPVSQHDTIGDVEPDFNEYI
                     LIKFKLDDGYIIPTATLRPETIYGVTNLWVNPNVEYVRIQIDNERWIVSKEAARKLQF
                     LNHKVAIQSSIYGKQIVGKYVEDPVRKVSIPLYPASFVESDNGTGIVMSVPGHAPYDF
                     QAIEDLKKNISLRDEFVSLKIDVMPITIIGSDDYNHAEGNDSILMSPAAKIISKFKVK
                     DQEDPQLEKATNELYSHEYYKGKMLQNTGKYVGMAVSVAKDMIKNEIVSNGIAEIMFE
                     LINKPVRCRCGTECVVKILNDQWFINYGDKKWKKLAHECINKMDIVPEEIRQEFNYVI
                     DWLRERACARKSGLGTKLPLDQDWIIESLSDSVIYMSYYILAKYVNHTNNNNNNGISD
                     SSSKLIINVNNVDALNDSFFDYIFLGNGDVRQIAAECNVSISLIESIRNEFSYFYPLD
                     ARHSGRDLVQNHLSFFIFNHVAIFTRENWPRKIVVNGSVLMEGKKMSKSLGNIIPLRA
                     AIKEHSADVIRLAMLSSAELLQDADFSFEAIKGIRSKLDDIYDMAIEYSMVKSKFGSS
                     LFSSKILSEANTEIEDRWLLSRLQNHITDITVSMDKLRVRKALHDILYLLDQDLQWYR
                     KRITAKNRDDSLIALTLAIFLDNRIRMLAPFAPFISEEVWEIIGGKYDSIIFAGWPIV
                     DEDKKDPIAEESEQLIINLISDLQNILRVTKISPTKIIIYTSAQWKQEIYQKILEYIL
                     LENKTNFGDIMKQLVKDPETAKARNDPKLIRNMIDDILSDPIEARNRRLKLTVFDEIF
                     PLNDAKKLLSIESGNSQAEIIVHSEDDINKYDPKEKSKYSRPFKPAIYVE"
     gene            complement(8678..>9246)
                     /locus_tag="VHF44_00085"
     CDS             complement(8678..>9246)
                     /locus_tag="VHF44_00085"
                     /inference="COORDINATES: protein motif:HMM:NF021246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="poly(R)-hydroxyalkanoic acid synthase subunit
                     PhaE"
                     /protein_id="HEX2123979.1"
                     /translation="EERAKDKIGNDTTNVSVPQQEEQMTKILHNWTEFIKMPTIGPFH
                     AFFQDFTSYAQDLLSLNQTIINAQTNLNEYWKLINMAYVQATKEVSERAPKKLNSKED
                     FEQYRKITINAFEDAFTKLFSSKEFSVAYGKVSNDLLDLFKKMQKFAEKNLKVLNLPT
                     RDEMDQILKDIHDIKRTIHDMKKLDYKG"
BASE COUNT         3205 a         1477 c         1751 g         2813 t
ORIGIN      
        1 gatgctgaaa tcggttcaca tggctataac gaattagaat ggcctattgt ccggcgagtg
       61 attcatgcga ctgcagattt tgacttcgca agaaaaggaa aaataatatt ccacaacaat
      121 cctataggtt cagcattcaa tgctattaaa aacaaatgta atatcgtcac cgatgtagat
      181 atggtattat ctgcgttgaa taaaaaatcc atttccgacc ttgggttgaa gagtgcttgt
      241 tatatctctg ataagactct cagcgataaa gctcgtctat ataataaaac tagatcagaa
      301 atggccatga ggtatgctgc agatgaaatc aacggaggaa tagtagccat tggcaatgct
      361 ccgactgcct tgtatgaaat tataaagatg gttagagaga atgtgacaaa acctgcactt
      421 attgttggga ttccagtcgg atttgtttct gcttctgaat ccaaagacga attaagaaag
      481 atcgatattc catttatttc taacatagga agaaaaggag gaagtcctgc cgcctcctcg
      541 attgtaaacg caataatgtt gctatataaa agtaagttat aatctagatt attcggatat
      601 tggcaaagca atgaaaaggc tatgtttttt tagccagcgt tattggtata atgcagacta
      661 acaaactagg agtaagaaat taacaccagt aacaaaatga aaaattcatc aaaaaaaatt
      721 cttgacatat tggcacgaag acaaagtaaa gaagtgccaa gccatgaaga ttatctgcga
      781 aagatttaca caataaggca ttacgattat tagagattga aatatctcta ctctttttat
      841 tattattatt atttttgagg ttaaattcat gaacgggata aaaatataac aagcaatatc
      901 gggagctacc aaaatacgtt taagtgccat tggcatttaa taatgagaaa ctgaatcata
      961 ttgaaagaaa tcaagactca acttgaaatc atggcatctt ctaaacgtgt atggcaagtc
     1021 cttacggatt tcccaaacta ttctaaatgg aatccagtta ttgttcaatt aaaaggagaa
     1081 gcaaaggtca caacaaagtt ggagattcac gttcgaacaa aaggtggtaa aactaggatt
     1141 tacaagccta ctataacaaa ggttgaacct aatcatgaat tacgttggtt tggaaaatca
     1201 attttcccag gaatgttaaa tggtgaacgc attttcacta tagattccct tggaataaat
     1261 aatgtacttt tttttcatag acagatcttt accggattag gagtttatat tgcaggcaac
     1321 cggctggata gggatataag aggcactcta aatgaaatga acgtggcatt aaaaaagcag
     1381 gcagaacagc ttcctgtcag ttgattattt atcttcgaaa aatcttgtta tctatgcttt
     1441 atattaaatt gttttatacc taaattgttt tttctgattt gacaatccac ttgcctgact
     1501 ttgatttcaa tactatattg ccaacaagct ttcctccgct atacaccttt gcgatttcat
     1561 cgctgacacc aagaagcgat gaaataagac tgcctttttt atggtaacct gcctctataa
     1621 ctttcatatt taatttgctg cttgctttaa cgatgattaa gcgagctgct gaccaatcgc
     1681 cattccaaga tattgcatcg aaattaccaa attttaaagt agaaagagaa taattctctg
     1741 atctaatctc taattttcta tttttcatct tagcatatga attcatccaa tctatagctt
     1801 ttgccgattt tccttgttct aatgcgaaat tatttgcact tgtcaatttg tatttgttaa
     1861 attataattt ctttttgaat attaaaactt aatatttaga ggtaaataaa gatatgatag
     1921 agaaaggcaa cagaattctc atctcgatat agaaagcacc tattgccaca tttacgagac
     1981 ggttcaaata ggacttcata tatatataaa gaaatggaaa gcaaaagcga aaatgtaatt
     2041 catgtaacaa gtaaatcttg ggagagtgtt gttataaact cagatatgcc tgtattagta
     2101 gacttttggg ccgaatggtg tggcccatgt aggatggttg ggcctgctgt agaacagctg
     2161 tcgcaaacaa tgagtgacaa gataagagta gcaaagctaa atgtcgatca aaatcaagaa
     2221 attgcaatga aatatggcat tcgatcaata ccttcattat tgttgttcaa agcaggcaag
     2281 gaaattgcaa gaacagtagg tgcttcttcc aaagaatcat atcagaagtt tatcgagcaa
     2341 tctctttcaa aggcttaaat tgcaatattg catcattgca atatctccat atatcacttt
     2401 tatttttaat ctctacaaaa gcattaatat tgtttcttgc tacggatagc aagcattgag
     2461 caaaaaggaa cttgctaatc tcttttcatc taatcctgac agatattata gagtttcact
     2521 atttgataga aagggtttca ctagacagaa atgcaatata tgcggcaagt tcttctggtc
     2581 aatgattgaa aggacatttt gcccagatca tgaaaattat agttttatag gcaaacctcc
     2641 aacaagaaag cgactggatt atgttaacgc ttggaaggag gtcagagaat atttcagttc
     2701 aaacagtcat tcaataatca gacggtatcc agtagtctgc agatggcgag atgatctcta
     2761 ttttacaata gcatcaattg tagattttca gagggttatg gggagcaaag tagtttttga
     2821 attgccttca aacccgctta ttgttccaca gatgtgtttg cgttttaacg acattgaaaa
     2881 tgtaggtttg agcggcagac actacacaag tttttgcatg attggacaga catgcaatgc
     2941 tgatgcaccg ggtggctatt ggaaagacaa atgtattgac ttagattatg gcatgcttac
     3001 aaatgccctt ggaatattgc cggaagaaat cacctttgta gaagacgtct ggatgggtgc
     3061 tggggcattt ggatattcat tggaatattt cgtcagcggc ctagaactag gcaatgccgt
     3121 ttttacagaa tttgaaggaa atgagaataa ctatcgtgtg ctaccaaaca agattatcga
     3181 tatgggagcc ggacttgagc gcttctcttg gattacaatg ggaacaccga caagttatga
     3241 ttgctctttt ggtcctgtag tacaaaaatt acttaacaaa gtgagcgctt ctgaagattt
     3301 agcgtttctc tccagatatt ttgaggcagc ttctagcaaa gttgaacata tgggcagaga
     3361 tataaaagaa ttaaaatctt ctattgctaa ggaattaaaa atctccgagg agcagcttgt
     3421 gaaagtaatt acaccttacg aagcaattta cacgattgca gatcatagtc gtacgttatt
     3481 atttgcaatt tcagacggag ctcttccatc aaatgtgggt ggaggatata atcttagagt
     3541 gattctaaga agagcacttt caatatcaga tagacttggt tggaacataa aactcgaaga
     3601 tgttgctgac cttcatattg attatcttaa acagatgtat cctgaacttg aagattatag
     3661 ggaggacgta agaacaattc ttcagattga atctagcaga tatataggct ccagagaaag
     3721 aatggattca attgctgctt ctataaaaaa taataaaaag aaaataatag ttgaggatct
     3781 cattagaatg tatgaatctg atggtgtcac tccagacttt ttaatggaat caggagcaat
     3841 agaaagcatt ccttctactt tttacacaaa gcttgccgaa cttcatacga tccaagcatc
     3901 aacacaggcc caacagccga tctatggtct agaaaatctt gcacctacaa gactcttata
     3961 ttatgaagac gaatcgatcc gtaaatttac agccaaggtt ctcaagataa tagacaataa
     4021 atatgttatt ttagatcaga ccgcctttta tccgcgcggc ggtggccagg aaccggataa
     4081 tggggagatt gatgacataa aagtgataga ggtaataaaa cagtcagata ttataattca
     4141 taaattaaaa gatgccaggg aaaaagatat cgttgaaggc aaaactgtct atgcaactat
     4201 aaatggtcga agacgagatc tgattactaa acatcatact gcaacacata tacttaatac
     4261 atcatctaga agtaatcttg gatcatgggt atggcagaac tctgccttta aggatgaagg
     4321 ttatgccaga ctcgatatca ctcatcattc tgctcttaat agagaagaaa ttgaaagaat
     4381 tgaaaagact gctaataatg taattagaca aaatttgcca gttaaaatca agatatatga
     4441 ccgtggcgat gctgaacaac aatactcatt tagaatttat cagggcgggg tggttccaac
     4501 caacaatatc agaattgtaa atattgaagg ctgggacata gaagcctgtg gaggaactca
     4561 cataggccag actggtgaaa tagggcttat aaaaattata aaagccgaaa gaatacagga
     4621 tggaatagta agattagaat tcgttgctgg cgaagctgca ttgaactata tacaaaaaca
     4681 ggaaaaccaa ctcactgtta ttgcacaatc tttaggctca agcagagaga aggtagttga
     4741 gacattccat aaaggcgttc aggagtcaga agagacaaat aagaagatca agataattat
     4801 gcgaaaaatt gcacctttga tagcaaagtc tatttctgcg gaggcatcag aattagtacc
     4861 acacggaatc aaactctaca atgtttatga cgaagaactc gatgatgagt attatattgc
     4921 tataggcgaa aaatctatcg aaatcgatcc atcccttatc tatatcgctt tgatctctaa
     4981 aggtcaagga attcgcgtga ttgtctttgt cggtgaaaag gcaagaggta aaaatatcaa
     5041 agctggcctt atcgcaaaac aactttctag caaacttgga ggctcaggag gaggagatga
     5101 aagattcgga caaggtggag gtaagttcaa atccaaaata caagaagctt tactttcagc
     5161 agaagaatca gttatgaaaa ctatctcagg ataatagtaa aacatgatta acaccaataa
     5221 caggtacaac aacaacaata acgacaatat agattggagt ttaatagaaa aaaagtggcg
     5281 tcatagatgg gatgagcaac agatcttcaa tagtgatcct gatttttcaa agaaaaaata
     5341 tttcataaca gttgcgtatc cttatccaaa ctctcctcaa catattggac atggaaggac
     5401 ctacacactt gcagatgctc atgctcgtta tatgaggatg aaagggtaca atgtattgtt
     5461 tccaatgggc tttcattaca ccggcacacc tattctaggc atgtcacgaa gaattgcatc
     5521 cggtgataag gaactcctag aaacatttca atatatttat catatttcag aagatgtaat
     5581 aaaaagcttt gttgaaccaa taaaaattgc aagctacttt cataatgaga tcaagcttgg
     5641 tatgaaagag atgggatatt ccatagattg gagacgggaa tttactacaa tagataaatt
     5701 atattccaag tttatttcat ggcaatttaa tactttgcga aagaaaggat tgatagtcca
     5761 aggttcccat cctgttggct ggtgtccaaa agaccaaaac ccagttagtc aacatgatac
     5821 gatcggtgat gtagaaccag attttaatga atatatacta attaaattta agctggatga
     5881 tggatatata attccaactg caacgcttcg gcctgagact atttatggtg tcactaactt
     5941 atgggtcaat cccaatgtag aatatgtaag gatacagatt gacaatgaga gatggattgt
     6001 tagtaaggaa gctgccagaa aactgcaatt tttaaaccat aaagttgcaa tccagtcgtc
     6061 gatatatgga aaacaaatag ttggcaaata tgtagaggat cccgttagaa aggtttcgat
     6121 cccattatat cctgcatcat ttgttgagtc tgataatggt actggaattg tgatgtctgt
     6181 tcccggacat gcaccttatg atttccaggc tatcgaagat ctgaaaaaga acatttcact
     6241 tcgtgatgaa tttgttagtt taaaaatcga tgtaatgcca ataacaataa tcggatcaga
     6301 tgattacaac cacgccgagg gtaatgacag tattttgatg tcacctgcag ccaagatcat
     6361 aagcaaattc aaagtaaagg atcaagagga tccacaactg gaaaaggcga caaatgagct
     6421 gtattcacat gaatattata aaggaaaaat gttacagaat actggcaagt acgtaggaat
     6481 ggcagtatct gtggcaaagg atatgataaa gaacgagatc gtatcaaacg gtatagccga
     6541 gataatgttt gaactaataa ataagccagt tagatgcaga tgcggtactg aatgtgtcgt
     6601 caaaatattg aatgatcaat ggtttataaa ttatggtgat aagaaatgga aaaaattagc
     6661 acatgaatgc ataaataaaa tggatatagt tccagaagag atcagacagg agtttaacta
     6721 tgtaatcgat tggttgagag aaagagcatg tgcaagaaaa tccggtcttg gtactaagtt
     6781 accattggat caggactgga taattgaaag tctgtcagac tctgttatct atatgtctta
     6841 ctacatactc gcaaaatatg ttaatcatac taataataat aataataatg gcatttctga
     6901 tagtagtagt aaattaatca taaatgtaaa taatgttgat gctttaaatg attctttttt
     6961 tgattacata tttttaggaa atggagatgt caggcagata gcggcagagt gcaatgtttc
     7021 tatatcacta atagagtcga tacgaaacga attttcctat ttttaccctc tagatgcaag
     7081 acattctgga agagatttag ttcaaaatca tctatcattt tttattttta atcatgtagc
     7141 aatttttaca agagaaaact ggccgagaaa aattgtcgtc aatggttctg tccttatgga
     7201 aggaaagaag atgtcaaaat ctctaggtaa cattattcct ctgcgcgctg ctatcaaaga
     7261 acatagtgcc gatgtaattc gtttagcaat gttgagttct gcagaactat tacaagatgc
     7321 agatttttca tttgaagcaa ttaaaggaat tcggtcaaag ttagatgata tttatgatat
     7381 ggcaatagaa tattcaatgg ttaagtctaa attcggatca tctttatttt catcaaaaat
     7441 attatcagaa gcaaatacgg agatagaaga tcgatggctt ctcagcagat tgcagaatca
     7501 tattacagat attacagtat caatggataa gttaagagta agaaaagcat tgcatgatat
     7561 actgtatttg cttgatcaag atttgcagtg gtataggaaa agaataacgg ccaaaaaccg
     7621 agatgattca ctcattgctc ttactttagc aatatttctt gataatcgta tcagaatgct
     7681 tgctccattc gctccattta taagcgaaga agtctgggaa attataggag gaaaatatga
     7741 ttcaattatt tttgcaggtt ggcctattgt agatgaagat aaaaaagacc caatagcaga
     7801 ggaatcagaa caactaatca ttaatcttat atctgatctt cagaatattc ttagagtcac
     7861 aaagatctct ccgactaaaa tcattatcta tacttcagct caatggaaac aagaaatcta
     7921 tcaaaagatt cttgaatata tattattaga aaacaaaact aactttggag atattatgaa
     7981 acaactggtc aaagatccag aaacagcaaa agcgaggaac gatcctaagc tgatacgaaa
     8041 tatgatagac gatatcctat ctgatccgat tgaagctagg aacagacgat taaaattgac
     8101 tgtttttgat gaaatatttc ctctcaatga tgcaaaaaag ctgttatcta tagaaagcgg
     8161 aaattcacag gcagagataa ttgtccattc agaagatgac ataaataaat acgatcctaa
     8221 agaaaaatca aaatattcta gaccttttaa acctgcaata tatgtcgaat agttctatca
     8281 tttttaaata gcttgcaaga gtggcttctc tgtatattgc agacaatatg gaagggttta
     8341 gaaatgttag aatgattaat aggattaatg atatgagtaa tttctatatc ttttaagata
     8401 tgcaaattat cgttttttca atattcgagt tgcaaatcat gctgcggttt ctgcctttga
     8461 tatgaaaaac atgatcctgt cctattacat cttttgcttt tattgcaatt ttatctttta
     8521 caaaaatatg ctatatccaa actataacat ataaaacaga tgttcttata ttactatatt
     8581 tatagatcgg agggtctcct aattaagata gtatccattg ataatatcga cggtgtcagt
     8641 gaatctttac tcatttttta tgagacttat tgtattctta tcctttatag tccagttttt
     8701 tcatgtcatg aattgtcctt tttatgtcat gaatatcttt taatatctga tccatttcat
     8761 cccgtgtagg aagatttaaa actttcagat tcttctctgc aaacttctgc atctttttga
     8821 agagatccaa gagatcattt gatacctttc cataagcgac tgaaaattct tttgaactaa
     8881 ataatttagt gaaagcatct tcaaatgcat ttattgttat ttttctgtac tgctcaaaat
     8941 cttcttttga attgagtttt tttggtgctc tctctgagac ttcttttgtt gcttgtacat
     9001 aagccatatt gattagtttc caatattcat taagattagt ctgcgcgttt attatggttt
     9061 gattaagact caaaagatcc tgggcataag atgtaaaatc ttggaaaaaa gcatgaaatg
     9121 gaccgattgt aggcatttta ataaattcag tccaattgtg caatatcttt gtcatctgtt
     9181 cttcttgctg tgggacacta acattggttg tatcatttcc aattttgtct ttagccctct
     9241 cctcca
//
LOCUS       DATABJ010000005         1712 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_8780, whole genome shotgun sequence.
ACCESSION   DATABJ010000005 DATABJ010000000
VERSION     DATABJ010000005.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1712
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_8780"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(138..1316)
                     /locus_tag="VHF44_00090"
     CDS             complement(138..1316)
                     /locus_tag="VHF44_00090"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX2123980.1"
                     /translation="MSDYYDVIIAGGSVSGLLAGREIAAKGLSVAILEEDAEIGTPEH
                     CGGLVSINGIQNLGIIPSSNAIENKIKYARIASSSKNFELNAEEQKVIVLDRRVFDKQ
                     IAFQTQRLGGNIRVRCSMRSISKRNDFGNDDNHHYYDIRTSEGTLKCNYFVDARGVTS
                     ILQRNREGVLQSAQYEVYASWIEHDTIEVKFDSERYPGFFAWIIPTGRGKAKVGVAGK
                     SINAANALKSYIDSKGQSYSVIRKVYAPIWVRGPLETFVYERTLIIGDAAGQTKPTTA
                     GGIYTCGMGGIFAGRAIANAIQQKNDKLLYDYQKNWFSIFKEEFDKMIIARRLLERLD
                     NKAIDELFSTITQVETEQLSKTGDFDFHSSALAKMLGAKGAAKIIKTVLGNEIRRLLN
                     "
BASE COUNT          535 a          331 c          250 g          596 t
ORIGIN      
        1 ctttttcctt tatttttctc tattcttgta cttttgttgt catgacgacg tcattcaact
       61 tgtaacgtga gcaacgttca atatagatac aagtgatctt ttcttgattg aaaagttgta
      121 tacaacttat atcttgctta atttaacaac ctcctaatct cattacctaa gactgttttt
      181 attatttttg cagcaccttt agctcctaac atttttgcta aagctgatga atgaaaatca
      241 aagtcacctg tttttgaaag ttgttcagtc tctacttgtg ttatcgttga aaataattca
      301 tctattgctt tattatctaa tcgttccaat aaacgtctag caataatcat cttatcgaat
      361 tcctctttga aaatagaaaa ccagtttttc tgatagtcgt ataataattt gtcattcttt
      421 tgttgtatag cattggcaat ggccctgccc gcaaaaattc ctcccattcc acaggtatat
      481 attcctccag cagtggtagg cttagtctgt cctgcagcat ctccgattat tagagttcgt
      541 tcataaacaa aggtttccag tggtcccctg acccaaattg gcgcatatac cttacggatg
      601 actgaatatg actgtccttt actatcgata tatgatttta aggcatttgc agcattgatc
      661 gatttacctg caacacctac ttttgctttt cctctacctg ttggaataat ccatgcaaag
      721 aatcctggat atctttcact atcaaactta acctcaattg tatcgtgctc aatccaagaa
      781 gcatacacct catattgagc tgattgcaac actccctctc tatttctctg aagaattgat
      841 gtgacacctc tggcgtcaac gaaataattg cattttagag tgccttctga cgttcttatg
      901 tcgtagtagt gatgattatc atcattacca aaatcatttc ttttagatat agaccgcata
      961 gaacacctaa ctcgaatatt tcctcccaat ctttgagttt gaaaagcaat ttgtttatca
     1021 aatacgcgtc tgtcaagaac aattactttt tgctcttctg cattcaattc aaaatttttt
     1081 gaagaagagg caattcttgc gtatttgatt ttattttcaa ttgcgttact tgatgggata
     1141 atgccaagat tttgtattcc attaatgcta acaagtccgc cgcaatgctc cggcgttcca
     1201 atttctgcat cctcttcaag aatagcaaca gatagacctt ttgcagctat ttctctgcct
     1261 gctagtaatc cggaaacact tcccccagcg atgattacat cataataatc agacataaat
     1321 aacacataag taacgtggaa gggtaaatta tactattata attaaaagag ataatctgac
     1381 tttaataata tttactaatc tctaatggat attttatgtg tgcttttgtt cttcatattt
     1441 gaccaaatct gcgcaaaatt tatcatgctt gatgttaaga tcaaaataaa ataaaaaagc
     1501 aaaaaaaggt attatccttg acagaaaaaa aatcgtgtag agatgtaatt gcccaataca
     1561 atgttaatat gtaaatatta gaaaacgcag aaaaaatctt ataaagcatc attaaaaatc
     1621 aaattagcca ttatgactga caaaagattg attgcctgaa atgtcaatca atagaattgc
     1681 aaaagatcag agtcacacag atatttgtct tt
//
LOCUS       DATABJ010000006         6174 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_227312, whole genome shotgun sequence.
ACCESSION   DATABJ010000006 DATABJ010000000
VERSION     DATABJ010000006.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6174)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6174)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6174
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_227312"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..211
                     /locus_tag="VHF44_00095"
     CDS             <1..211
                     /locus_tag="VHF44_00095"
                     /inference="COORDINATES: protein motif:HMM:NF012346.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="TCP-1/cpn60 chaperonin family protein"
                     /protein_id="HEX2123981.1"
                     /translation="QEKNSIKMWYRQALLLIGMDKILVDSLGDVPITNDGATILKEID
                     VQYPAAKMMVVVSKSVDDGVGKDLW"
     gene            891..1106
                     /locus_tag="VHF44_00100"
     CDS             891..1106
                     /locus_tag="VHF44_00100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2123982.1"
                     /translation="MHPLSKDDNDTRKQQQPADNSQAEQIEDGINKLPANKSKVIASK
                     ISKFASGFKIPDNKKPKISKSKVHERD"
     gene            1450..2811
                     /locus_tag="VHF44_00105"
     CDS             1450..2811
                     /locus_tag="VHF44_00105"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: protein motif:HMM:TIGR02086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitase/3-isopropylmalate dehydratase large
                     subunit family protein"
                     /protein_id="HEX2123983.1"
                     /translation="MQSLAQQNSSHSVSSIKNILEDSSLTFAEKAISIKSLTLKNKQG
                     EVSKPSMAGDIAIVDVDLAMAQDSTGPLAIRSLNEMRVNKLFNPSRVLLVIDHTFPAA
                     DEKVANLHAMMRGFASKHSCMLVEGSISHQHILEYLAVPGMMILGADSHTCQAGCISA
                     FATGIGSTEMAAVWATGQMWLRVPETIKIKLSGNFSKGVFARDLILDYIGKVGEDGAN
                     YKALEWTYANDNTRKEFSIDSRACISNASMECGAKISVFPTDELTRTYLNKNPRIIKD
                     VPEIDIQAGSSANYVEEIEIECGKIEPMVAGPDHPDLVHSVEEIGGMEIDQAFIGSST
                     NGRIEDLEIAARILKGRKVHKNTRCVVTPASVKVYEEAIKRGYVEIYLESGAVFTNAT
                     CGACVGTHLGALGESEICLSSSSRNFVGRMGALSSKVYLASPATVAASAIEGKIIDPR
                     RFL"
     gene            2813..3415
                     /locus_tag="VHF44_00110"
     CDS             2813..3415
                     /locus_tag="VHF44_00110"
                     /inference="COORDINATES: protein motif:HMM:TIGR02087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEX2123984.1"
                     /translation="MNNKPTPESSPHSSPLMPSPPSGTVPPPVVTTAILNGKAWVFGD
                     DINTDIIIPFRFKSRTNDPYEMAKYAMYGIDPDFPTKISKGDFIVAGKNFGGGSSREQ
                     APVALKYAGISIVIAESFARIFYRNAFTIGLPALEISEIKGKVVQGDELKVDIGNFTV
                     ENIRTKGIFHARKIPEFMQQMLLEGGLVEYYKRNKRFPWM"
     gene            3534..4379
                     /locus_tag="VHF44_00115"
     CDS             3534..4379
                     /locus_tag="VHF44_00115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2123985.1"
                     /translation="MTSVEKNWIGLRNSGIRIVLLGLFSLLLTFIIYGRLTTPSGEQP
                     VIITPYLMNLANAVLTIIFLSLLFVGYGIYRIFKAEQRLKTDANSLMSYITAAFLDNK
                     YWKVMAISAIIYGIFFGFLSQIFIYRYDISFSEQGITVPSVNVIPCCNMPGYVPMLTV
                     FPTDHFLIMIIPINIILAVIVSVLVGFNISLTLYAFKLEKAQNTKRVSFVGSVGAISG
                     LFVGCPTCAGSLFSMLLGYSLGTTMAVLAPFQTLFILISIPSLILAPFLIGRRIRGRY
                     SCKLA"
     gene            complement(4376..6070)
                     /gene="asnB"
                     /locus_tag="VHF44_00120"
     CDS             complement(4376..6070)
                     /gene="asnB"
                     /locus_tag="VHF44_00120"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004066 - asparagine synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006529 - asparagine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HEX2123986.1"
                     /translation="MCGIAGILSKRNEDVVPLVGTMLSCMTNRGPDGAGIAVADSIVQ
                     SDSLASLEYHELSGSNALGHVRLAIVGGTHGQQPFHSCNGKFTLEHNGEIYNYKKIRR
                     RLMKHHQFVTQTDSEVIVHLLEDHFNKNNDLLYAIRKTVAELDGVYALVIKDEETENI
                     ALVRDRMGVRQIYYGENNHFIAFASERKALWKVGIKEPTNRVLPGHAIIIKSDGLIQN
                     FEVARSPVYSKKIIYKTMDSAVNAYEKVLLASMKKRTQDFDRVGIIFSGGIDSVIIAW
                     LAKKMVRDVICYTGGVQGSSDIAFARLIAKRLNLKLRVNELTQNEVEQMIPEVINTIE
                     DTNAGQIEVAIPVYAAVKLAHEDGINVMFSGQAADELFGGYSWYTKVVEKEGYEKLRE
                     HMTEDMLLLYRETLEREDKITMAHSIEMREPFLDLKVIAFSMQTDMKLNVKGSGDTFG
                     KHVHRKLAQKLGIPRNIAYRVKEAAQHGSGMHDIFNAIARKHGFDESTISKQYLNALQ
                     SRQKIGSSQRYGYLFENEKMWIAEPHVQMYLDSISKTLPILEQDLVTNLRKDKKAY"
BASE COUNT         1970 a         1086 c         1126 g         1992 t
ORIGIN      
        1 gcaggaaaaa aacagtatca agatgtggta caggcaagcc ttactcctta taggcatgga
       61 taagatatta gtagattctt taggggatgt tccaattaca aatgatggtg caacaatatt
      121 aaaagaaatt gatgttcagt atccagcagc caagatgatg gtagtagttt ccaaatctgt
      181 agatgatggg gtagggaagg atttgtggtg actatggccc cagtgacatc tagacatgat
      241 atgtagagtg aagaacgata attcgtcgct agatacgttt tgctttaatt gattatggtt
      301 ttgggactta accaataata gattctaatt taatgttgat agtattggta attataccag
      361 aagaatactt gttattctct cccaagaact atgtatttta atcaattgca agagataggt
      421 gtaggacagc aaggaacatg gctagaagat atatactaaa ggttgctaga gaataataca
      481 ttacaatgtc ttgcaggctt aatgaattct aaaagaaaca tggcaataga agataaaagt
      541 gaaagagaaa atatgtatgc taaggcccgt atgcaagaag tagttcattt attaatgcaa
      601 cgagagatta tttatattct aacctcctaa tatttcaaca agttagtcca ttagtgttaa
      661 agttaaatta cataactgga tctctggatc agcatgtatg ctacctataa aaattagtgt
      721 attattgtat gaaaagaaaa gttacaatgt ttactatctg aagaattgtc attgtgtgtt
      781 gatattcaca gaaaacaacg agtaggctgc ttttaatata ttatgtttct tttgataaaa
      841 taccaaacca aatatttatc atatattata actatataat agatacacta atgcatcctc
      901 tatcaaaaga tgacaatgat actcgcaagc agcagcagcc agcagacaat tcacaagcag
      961 aacaaataga agatggtata aacaagcttc ctgcaaacaa gtctaaagtt atagcgtcaa
     1021 aaattagcaa atttgcaagt ggatttaaaa ttccagataa taaaaagcca aaaataagta
     1081 aatcaaaagt tcatgagcga gattagtata tatacaatct ttgatgccaa attaagacat
     1141 taacctagta ttactaatct agatgtttct ccaaatgttg caattaaatt aaaatgttat
     1201 tgtgaatcta aatcatgcat agagtttctt ataatgacac tattaattca atagctataa
     1261 tttataccgc atctaatgtc tcgctttact catcagaaaa gtggatatga ctttgttttt
     1321 gattcaactg gcaccagtta tactcttgtt atactagtta taaagacaaa ttttaggtat
     1381 taaaaatgat aaacatccat aagtaataaa aactgatgct taaaatatct gattaggaaa
     1441 ggaactaata tgcagtcatt agcacagcaa aacagctctc attctgtttc ttccattaaa
     1501 aatatactgg aggatagttc acttacgttc gctgagaagg caattagcat aaaaagctta
     1561 acactaaaaa ataagcaggg cgaagtgtcc aaaccttcta tggctggcga tattgcaatt
     1621 gtagatgtgg atcttgctat ggcacaagac agtacgggtc ctttggcaat acgttcatta
     1681 aatgaaatgc gagtgaataa actctttaac ccttcaaggg ttttgctagt catagatcat
     1741 acatttcctg cagcagatga aaaggtcgca aatctacacg ccatgatgag aggtttcgct
     1801 tcgaagcata gctgtatgtt agttgaagga tctatatctc atcagcatat tcttgaatat
     1861 cttgctgttc ctggtatgat gatactcggt gcagattctc atacatgtca agctggatgt
     1921 atttcggcat ttgccactgg aattggaagt acggaaatgg cagctgtatg ggctacgggc
     1981 caaatgtggc tacgcgtacc agaaacaata aaaattaaat tatcgggcaa ttttagtaaa
     2041 ggggtttttg ccagagatct aatactcgat tatattggaa aggttggtga agatggagcc
     2101 aattataagg ctttggagtg gacatatgca aatgacaata ccagaaagga gtttagtatt
     2161 gactcaagag catgtataag caatgcttca atggaatgtg gtgccaagat ttccgtattc
     2221 cctactgatg agctgactag aacttattta aataaaaatc caagaattat taaagatgtg
     2281 ccagaaattg atattcaggc tggcagctca gctaactatg tagaggagat agagatagaa
     2341 tgtggtaaga tagaaccaat ggtggctggt ccagatcatc cagatttagt acattcagtt
     2401 gaagaaatag gtggaatgga aatcgatcag gctttcatag gttcttctac aaacggaagg
     2461 atagaagatc ttgagatagc agcacgtata ttaaagggca gaaaagtcca taaaaataca
     2521 cgatgtgtag ttactcctgc atctgtcaaa gtatatgagg aggccattaa acgtgggtac
     2581 gtagaaattt atcttgaatc aggagcagtt tttaccaatg ctacatgtgg agcatgtgtt
     2641 ggtactcacc ttggtgcatt aggggaatct gaaatttgtt tatcttcctc ttcaagaaat
     2701 tttgtcggaa gaatgggggc gctttcatca aaagtatatc tcgcatcccc agctactgtt
     2761 gctgcatctg caatagaagg aaaaataatt gatccacgga ggtttctcta atatgaataa
     2821 taaaccaact ccagaatctt caccacattc ttcaccatta atgccatcgc caccatcagg
     2881 aacagtgcct ccaccagttg tcactactgc cattttaaat ggtaaagcat gggtttttgg
     2941 agatgatatt aatacggaca taattatacc gttcagattc aaaagcagga ccaacgatcc
     3001 ctatgagatg gcaaaatatg ctatgtatgg aattgatccc gattttccga caaagatatc
     3061 taaaggtgac tttatagtgg caggaaaaaa ttttggaggt ggatccagta gagaacaggc
     3121 tccagtagca ttaaaatatg caggaatctc tattgttata gcagaaagtt ttgcccgcat
     3181 cttttatagg aacgcattta ctattggact tccagctctc gaaatttcag aaataaaagg
     3241 taaagtagtt cagggagatg agcttaaggt agacattgga aactttaccg tagaaaacat
     3301 acggacaaaa ggaatatttc atgcaaggaa gattccagaa tttatgcaac agatgttgtt
     3361 agaaggtgga ttagttgaat attataagag aaacaagcgg tttccatgga tgtaatcaga
     3421 attacatcaa ggtatattct atattttagc atagatccat acgataaatg atgatgctca
     3481 tgaccgacat gaccgataaa atttaattcc gactgggcac tccatttgtt aatatgacat
     3541 ctgtagagaa aaactggata ggtctacgca acagcggaat tagaattgtg ttgcttggct
     3601 tattctcttt gcttttgacc tttataattt atggcaggtt gactactcct tcaggcgagc
     3661 aaccagttat aattacacct tatcttatga accttgcaaa tgctgtttta acaattattt
     3721 tcttatcact gttatttgtg ggctatggaa tatacagaat tttcaaagca gaacaacgac
     3781 taaaaactga tgctaatagt ttaatgtctt atataacagc agcattttta gacaataaat
     3841 attggaaagt gatggcaata tctgcaatta tatatggcat tttttttgga tttctgtccc
     3901 aaatattcat ttataggtat gatatttcat tttctgaaca aggaattact gttccatctg
     3961 ttaatgttat tccatgttgc aatatgccag gttatgttcc catgctgact gtatttccta
     4021 cagatcactt tctaatcatg attataccaa tcaatattat cctagcagta attgtatctg
     4081 ttctggtcgg gttcaatatt tctttaactc tttacgcatt caaattagag aaagcacaga
     4141 acactaaaag ggtgtctttt gtggggagtg taggggcgat cagtggattg tttgtagggt
     4201 gtccaacctg cgccggcagt ttgttttcta tgctcttagg ttatagtcta ggaacaacca
     4261 tggctgttct tgctccattc caaacccttt tcattttaat aagcatacca tctttgatac
     4321 ttgcaccatt tcttataggc cgtagaatta gaggtagata tagctgcaag ctagcctaat
     4381 aggctttctt gtcttttctt agatttgtca ctaaatcttg ttctaatatt ggtagcgttt
     4441 ttgaaatact atctaaatac atttgcacat gtggctctgc aatccacatt ttctcatttt
     4501 caaatagata accatatctc tgtgagctac ctattttttg acgtgattgg agcgcattga
     4561 ggtattgttt agaaatagtg gattcatcaa atccgtgttt tcttgctatt gcattgaata
     4621 tgtcatgcat acctgatcca tgctgtgctg cttcctttac acgatacgca atatttcttg
     4681 gaatacctag tttttgggca agttttctgt gtacatgctt gccaaaggta tcgcctgaac
     4741 cttttacatt cagtttcata tccgtctgca ttgaaaatgc aattactttc aagtcaagaa
     4801 atggctcacg catctctatg ctgtgtgcca tagtgatttt atcttctctc tctaaagttt
     4861 ctctatacag taaaagcatg tcttcagtca tatgctcacg taatttctcg tatccttcct
     4921 tttcaactac ctttgtatac caagaatatc ctccgaaaag ttcatctgct gcctgccctg
     4981 agaacataac attaattcca tcctcatgtg caagctttac tgccgcgtat acggggattg
     5041 caacctctat ctgtccagca tttgtgtctt ctattgtatt aataacctct ggaatcatct
     5101 gttctacttc attttgagta agttcattga ctcttagttt aagattaagt ctctttgcta
     5161 tcagtcttgc aaatgcaata tcactagaac cctgaactcc accagtataa caaataacat
     5221 cccttaccat tttctttgca agccaagcga taattacact atcaatacca cctgagaata
     5281 ttattccgac tctatcaaaa tcctgcgtac gctttttcat ggatgcaagt aatacttttt
     5341 catatgcatt aacagcagaa tccattgttt tgtagattat tttctttgaa tatactggag
     5401 aacgggctac ttcaaaattt tgtattaaac catctgattt gataattatt gcatgacctg
     5461 gtaatactcg gtttgtaggt tcttttattc ctactttcca taacgcttta cgttcagacg
     5521 caaatgcgat aaaatgatta ttttccccat agtaaatttg tcttacaccc attctatctc
     5581 taaccaaagc tatgttttct gtctcttcat ccttgataac caaagcataa acaccatcaa
     5641 gttcagcaac agtctttcta attgcatata ataaatcatt gttcttgtta aaatgatctt
     5701 ctaacaaatg gacaataact tcgctgtctg tctgagtaac aaattgatga tgtttcatta
     5761 gccttcgccg aattttctta tagttgtaaa tttctccgtt atgctctaga gtaaactttc
     5821 cattgcagct gtggaaaggt tgctgtccat gagtaccgcc tacgattgcg agccttacat
     5881 gacctaaagc attactaccc gaaagctcat gatattctaa acttgcaaga gaatctgact
     5941 gtacgataga gtcagcgact gctattcctg ccccgtcagg tccacgattt gtcatgcaag
     6001 aaagcattgt tccaactaga ggtacaacat cttcatttct tttgcttaat atacctgcta
     6061 ttccacacat attatatcct ctgaattcta aaattgaatt cctaccttat agataagcaa
     6121 attacttgag ttcaactata atataattat gtataatggc ttaaaagtgt taat
//
LOCUS       DATABJ010000007         4610 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1751766, whole genome shotgun sequence.
ACCESSION   DATABJ010000007 DATABJ010000000
VERSION     DATABJ010000007.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4610)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4610)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4610
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1751766"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1010
                     /locus_tag="VHF44_00125"
     CDS             <1..1010
                     /locus_tag="VHF44_00125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004814 - arginine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006420 - arginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="DALR anticodon-binding domain-containing
                     protein"
                     /protein_id="HEX2123987.1"
                     /translation="NCWVIKPENEEEKVIVRSDGTATYIAKDIPYAAWKLGLVEDPFF
                     YYKFADQWDDSVLWATTLKFDAANPRHPSFNSGEKVITIIDSRQARLQRIISTVLSHL
                     QISNDRYYHLAYEAMTLSADTAKSLGLNIGDRQFMHISGRKGIYINADYILNKLQTTA
                     YQEVRKRNPDISNDITNRIAEEISISAIRYNLIKQDLDKIITFDIVDSLSLEGNTGPY
                     LQYTYARSQRILEKYGKENIPSENFSLLIQEAEVNLIKTISKMDLVIEETVRSLNPKL
                     LARYAYDLATGFNVFYEKVPVLREKDEKTMFSRLALVKAFGVTLNNIFNVLGISALEK
                     M"
     gene            1511..2353
                     /locus_tag="VHF44_00130"
     CDS             1511..2353
                     /locus_tag="VHF44_00130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine-N1)-methyltransferase"
                     /protein_id="HEX2123988.1"
                     /translation="MRIQEGYYVLLFHSNRKKWLVKVMPQKKLHTHLGVIDVSAVIGM
                     KYGSIIKTSEGKNVYLIEPTVHDFIMKSERKTQIVYPKDFGYIASRTGMQNGSIVLEI
                     GTGSAALTTFMASIVKPSGHIYTYDVNADFMAIARRNLEKAGMLQYVTMHQQDPHLGL
                     DIREADVAIVDLGDPWTVVTEVHVSLKGSGAFVAICPTMNQLEKTATVLKQCGYTDVD
                     CVEIMIRNIEAREGMTRPSMRMIGHTTYLIFGRKVELSNSELLDPSSPYASPESDDRV
                     QVFY"
     gene            2620..3108
                     /locus_tag="VHF44_00135"
     CDS             2620..3108
                     /locus_tag="VHF44_00135"
                     /EC_number="3.1.2.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047617 - acyl-CoA hydrolase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEX2123989.1"
                     /translation="MASPLKPGKRPAESQAEMTIIMLPTDANPKGNVFGGVILKHVDL
                     IAGLVAKRHSGRANTVTASIDRMTFLKPVFIGNALILTARLNYVRKSSMEVEVTVMSE
                     DLDDGTRIHAGTAFVTMVALDKYGKPTEVPPIILDSAEEKNHFKEGELRMLSRLKEAG
                     RI"
     gene            complement(3730..>4610)
                     /locus_tag="VHF44_00140"
     CDS             complement(3730..>4610)
                     /locus_tag="VHF44_00140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEX2123990.1"
                     /translation="SFEKAADILLLVRPDYTIFDEVRRAHDFGVFSDMRLAGVGMIGV
                     VHASSPLDAIQRFIGRVDLGMIPHILDTIIFIKNGKIEKVYEVLLTVKVPTGMSEADL
                     ARPLVEVRDFETQVIEYEIYTYGEENVVVPISELKSVTQSDNVIKKLAESKIRDTIRR
                     FDPDADINIISDNRVQVKVGKDVIARIIGKGGSTISELERMLGIKIDVEAKTPTLGKE
                     IDFEVSEAGSTVNILVDRSAIGKKVDVYIEDEFILNSQVGKKASIKTDKRSDNGKKII
                     NALLAGNKISLFQSRD"
BASE COUNT         1511 a          810 c          806 g         1483 t
ORIGIN      
        1 aaaattgttg ggtcattaag ccagagaatg aagaggaaaa agtgattgtc agaagcgatg
       61 gaaccgcaac ttacattgct aaagacatac catacgcggc atggaaatta ggactagtgg
      121 aggatccttt cttttattat aaatttgctg atcaatggga tgattctgtt ctttgggcaa
      181 caaccttaaa gtttgatgct gctaatccca gacatcctag ttttaattca ggtgaaaagg
      241 ttattacgat aattgattca agacaagcaa gattacagag aatcatctca acggtcctgt
      301 cgcatttaca gattagcaat gacagatatt atcatcttgc atatgaggca atgactctta
      361 gtgctgatac tgccaaaagc ctaggactaa atattggaga cagacaattc atgcatattt
      421 cgggcaggaa gggaatatat attaatgcag actacattct aaataaactt caaactactg
      481 cttatcaaga agtcagaaaa cgaaatccgg acatatcaaa cgatatcaca aatagaattg
      541 cagaagaaat atccatatcg gccattagat ataatttgat aaaacaagat cttgataaga
      601 taataacttt tgacatagtc gattcactca gcttggaagg taacacagga ccgtacttac
      661 aatataccta tgctagatct caacggattt tggaaaaata cgggaaagaa aatataccat
      721 cagaaaactt tagtctcttg attcaagaag cagaagttaa tttaattaaa acgatttcaa
      781 aaatggatct agtaatagaa gaaacagtca gatcacttaa cccaaaacta ttggctagat
      841 atgcttatga ccttgccaca ggctttaacg tattctatga aaaagttcct gtcttaaggg
      901 aaaaagatga aaaaaccatg ttttcgcgat tagcacttgt aaaggcattt ggagttactt
      961 tgaataatat cttcaatgtg ctaggaattt ctgcattaga gaagatgtga acgaagacga
     1021 tcaatctctt ataaagagac acatgaatac ttgaggagtt tatatgtata tattaactac
     1081 caatattatg caacttctca tcatttgttc tattcttgga cattagaaga aacacaggtc
     1141 atatcagaat ttctatctct taatctagag tatacttgag ttattaaaaa aaccgtttgt
     1201 ataacacacc cttgtacaaa accttcttga gaataaaacc ttacctatca ctaatcgtta
     1261 tctaaaagaa caatactagc aactttttgt taattgataa tagctttgca ttttcagacg
     1321 tggttttaag atcaacaatc tcttttctgg atcagatagc aggatgttca ttagtatatt
     1381 gattgtgaat gtgatatcaa caagcttttc ttcagcaaag taaactgttg cttaaagaat
     1441 gatgtaagat cgccaaaaca attctttctc tgcaaggatt tttatcggta taacatttgt
     1501 ttattatggt atgaggattc aggaaggtta ctatgtttta ctttttcatt caaatagaaa
     1561 aaaatggttg gtaaaggtta tgccacaaaa gaaattgcac acgcatttag gagtcatcga
     1621 tgtttcagca gttattggaa tgaaatatgg ctctattata aaaacgtctg aaggaaaaaa
     1681 cgtatatctt attgaaccaa ctgtgcatga ctttataatg aaatctgaac gcaagacaca
     1741 gattgtttat ccaaaggatt ttggttatat agcatctagg acaggtatgc aaaatggctc
     1801 tatagtatta gaaataggaa cgggaagcgc tgctcttaca acatttatgg cgagtatcgt
     1861 aaaaccatct ggacatatct acacttacga tgtcaatgct gattttatgg ctatagcaag
     1921 aagaaaccta gaaaaagcag gaatgcttca atacgttacg atgcaccaac aggatcccca
     1981 tttgggactt gatattagag aggcagatgt tgccatcgtg gatcttgggg atccctggac
     2041 tgttgtaacg gaggttcacg tttcattaaa aggaagcggc gcatttgtag cgatttgccc
     2101 aacaatgaat caactagaaa agactgcaac tgtgttaaaa caatgcggat ataccgatgt
     2161 tgattgtgtg gaaataatga ttcgcaatat agaagcaaga gaaggaatga cgcggccttc
     2221 gatgagaatg ataggacaca ctacttactt aatattcgga agaaaagttg aattaagtaa
     2281 ctcagaatta cttgatccat cgtccccata cgcttcgcca gagtcagacg atcgtgttca
     2341 agtattctac taagccaatt tatgtcttat tgtaatgcct ttcttatgtg tttaatttaa
     2401 tcctcatctg tttacataaa ttgcatatgt tgtctatatt gtttataata cttcttttcc
     2461 cttaaatgct tttgtcataa tcacttcgct aacgcgggat cagttttcag tctgttgtaa
     2521 tgggatataa aattgttgag caacttaatt ggagaccttt ttgtgtttgc tttgatacct
     2581 atgaatgttt aattatgata atttgtgcaa gtataaggga tggcatcgcc gcttaaaccg
     2641 gggaaaaggc cagctgaatc ccaagcagag atgacaatta ttatgttacc cactgatgca
     2701 aatccaaaag gcaatgtttt cggcggcgtt atattaaaac acgtagacct tattgcagga
     2761 ctcgttgcga aaaggcattc tggccgagcc aatactgtta ctgcaagcat tgatagaatg
     2821 acatttttaa aacctgtatt cataggaaat gctttaattc taacagccag attaaactat
     2881 gtacgcaagt catctatgga agtagaggtt actgtaatgt ctgaagatct tgatgatggt
     2941 acaagaattc atgcaggtac ggcgtttgta acaatggtcg ccctcgataa atatggaaag
     3001 cctacagagg ttcctccaat aatcttggac agtgcagaag aaaaaaacca ttttaaagaa
     3061 ggtgaattga ggatgctttc ccgtttgaaa gaggctggaa gaatctaatt aaacgtattg
     3121 attttaaata ttatatagtt ttccctagct tcactttgat gttatgatat tagcaatgaa
     3181 gtccaattgt tgtttatcaa tcattcatgt ttattgaagt agccaaatct aactggccaa
     3241 gatgttccta tatttcgtga atgccaagat ttgtacattc tgtaatgtaa acaagagggt
     3301 agtgcacgag caaatcctcc taaacttgct tgtctgataa cgcaaattcg cagaagcaat
     3361 atttttcagc tcgctattta tctgcattgt acttatcagg tcttactctg catatctatt
     3421 caaaatgtca tcggaaaatt gtcattgtga ttataaaagg ttaaagttaa aaaaatcaca
     3481 atataatacc tcttgttctt aagattctca agtcagagga atgttttgaa aattattcct
     3541 tctatttaac cctataaact gatctaaaca aacaaatcga atattttgaa ttgatttgag
     3601 atttcaatat atcaaattaa ttatataact tggttatgta tatttttctt attagatctc
     3661 tgttgaggtt ttgcttacag atcattcaca caaaaaagat caaaataatg cattgactat
     3721 gaatcagtat taatctctac tttggaaaag actaatcttg tttccagcca ataatgcatt
     3781 tattattttc tttccattgt ctgatcgctt gtcagtcttt atactggctt tctttcctac
     3841 ttgactgttt aagatgaatt catcttcaat atagacatcg acttttttcc caatagcact
     3901 cctatctacc aatatgttta cagtagatcc agcttcactg acttcaaaat caatctcttt
     3961 gccaagagta ggagttttag cttccacatc aatttttatg cctagcattc tttctaactc
     4021 ggatattgta gatccacctt taccaatgat cctagcgatc acatccttgc cgactttaac
     4081 ttgcactctg ttatctgaaa ttatgttgat atcagcatct ggatcgaatc tccttattgt
     4141 atctctgatt tttgattcag ctaatttttt aatgacgtta tctgactggg tgactgactt
     4201 cagttcagag attggaacaa caacgttttc ttcaccatat gtataaattt catattcgat
     4261 tacttgtgtt tcaaaatctc gcacctctac aagtggtctg gcaagatcag cctcgctcat
     4321 tccagtggga actttgaccg taagcagtac ttcatagact ttttcaattt ttccattctt
     4381 gataaatata atagtatcga gaatatgagg aatcattccc aaatctactc tacctatgaa
     4441 tctctgaatt gcatctagtg gactactagc atgtactact ccgatcatac ctacacctgc
     4501 taacctcata tctgaaaata caccgaagtc atgtgctctc ctcacctcat caaatattgt
     4561 ataatctgga cgcactaata acaaaatatc tgcagctttt tcaaaactac
//
LOCUS       DATABJ010000008         2778 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_9656, whole genome shotgun sequence.
ACCESSION   DATABJ010000008 DATABJ010000000
VERSION     DATABJ010000008.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2778
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_9656"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            522..1079
                     /locus_tag="VHF44_00145"
     CDS             522..1079
                     /locus_tag="VHF44_00145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2123991.1"
                     /translation="MKRTINIKKIVSSKAQTTMLVTIAIASVVMTTVWQIPQATATSL
                     EEIKVSREISAPVDQIWNIVSDVDNETKYWTTYKTIKNINKIDNIIEREVTVTAGLQN
                     AKTHQFVTVNPEQMVIQTNITEGPVTGSRVLTLSPSSDINATKIDVLWNIDMSGIPVI
                     VKGLAKDNFMKTTEEALNRIAQTVE"
     gene            complement(1239..1733)
                     /locus_tag="VHF44_00150"
     CDS             complement(1239..1733)
                     /locus_tag="VHF44_00150"
                     /EC_number="1.-.-.-"
                     /EC_number="1.4.3.5"
                     /inference="COORDINATES: protein motif:HMM:NF013412.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004733 - pyridoxamine phosphate oxidase
                     activity [Evidence IEA];
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_process: GO:0008615 - pyridoxine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEX2123992.1"
                     /translation="MKILNASEPEFGGPMTEDEVRNFLTNSKKNVHISTIDEKGEPNI
                     HPTWYYFDNNNDKIYIESGKASRKTQNLRRNNIIYYCIDDDNIPYKGVRGKGSVRISE
                     DVNCNLPIIEKILTKYLGSIGHPMSQTIISSIRKGDAIILEIIPKFYATWDHGKVKKH
                     NEIL"
     gene            complement(1910..2743)
                     /locus_tag="VHF44_00155"
     CDS             complement(1910..2743)
                     /locus_tag="VHF44_00155"
                     /inference="COORDINATES: protein motif:HMM:NF019013.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ester cyclase"
                     /protein_id="HEX2123993.1"
                     /translation="MEKIHTIKKIEKKDEAIISNIKIDKEVKQENNYCISFESGKAAM
                     NPKELSAAAATIVIVALTIMAIGTLDVIVPFPHASAQNVMAGESMTTSGINITSSDMI
                     DGEVENIASTGTEEEEQEAKNIKTVNQLREALNTGDVSRVHEFISPEYFNYESQVDPV
                     RSKLRGPEEFIDTVKNLRSAFADLHYEEQETIASGDKVISILNVTGKHVGNFFGIAAP
                     TGHDISYQAVHIHRIGEDGKIVEHRAIRDDLTFMMQLGLVGPASPEYEQLFQAWKGFK
                     Q"
BASE COUNT          856 a          506 c          442 g          974 t
ORIGIN      
        1 aatgtccttt gcccttttag atgatttttt tattttttct gttccagcgc ctccgtgtat
       61 tagtattcca aaatcaggaa gtatagaatt ggacttgttc attatctagg tctaaatcaa
      121 tgaagttaac tatatgatat aacattttta ttttctcatg tatgcaattt tcagtctgag
      181 tggtaaattt gagtcaattc tatctccgca ttccaccgaa tcagcttcac tagtgtatca
      241 ctttaaaggc tacatcatac aataatattt gaaaatggta cttggatgtt ttgtttgatt
      301 ataattcgaa ctacatggac agctatgctt aggcgaaata ataagcagac tctttgatac
      361 catttcgtat ataacaataa atatctctgc tacaactact tctttgatct caaattgttg
      421 gtcgttctct ctgaatgata aagcaactct tcttcagata acttagttac gtttcataga
      481 taaacaagga ttataagaaa aatttagtcc tttttatcaa aatgaaaaga acgataaata
      541 taaaaaaaat tgtaagtagc aaagcacaaa caactatgtt agtgacgata gcaatagctt
      601 ctgttgttat gacaacagta tggcaaatac ctcaagcaac agctacttca ttagaagaaa
      661 tcaaggtcag ccgtgaaata tctgcacctg tcgatcaaat ttggaacatt gtttcagatg
      721 tcgacaatga gactaaatat tggactacat ataaaactat caaaaatatt aacaagatag
      781 ataatataat cgaaagagag gtcacagtaa cagcaggcct ccagaatgcg aaaactcatc
      841 agtttgtaac tgtgaatcca gaacaaatgg taatacaaac aaatatcacc gaaggtcctg
      901 taacaggcag tagagtactc acactgagcc cttcatctga catcaacgca acaaaaattg
      961 atgtgttgtg gaatatcgat atgtcaggca ttcctgtcat tgtgaaaggt cttgcaaaag
     1021 ataactttat gaaaacaaca gaagaggcac ttaacagaat cgcacaaaca gtagaataat
     1081 aggatcactg tctgccgctc tttttttgca gtcaatcatc ctgaaattta tgttgacgta
     1141 tctataggaa gtcggatcaa gcctcagtta taggtgttaa tggtttagtt tttaataata
     1201 tataccgatc agagatgaaa tggccatata tcggaatact acaatatttc attgtgcttt
     1261 ttgactttac catggtccca tgtagcatag aattttggta ttatttctaa tatgatagca
     1321 tctccctttc taatactact tataatagtc tgtgacatag gatgtccaat acttccaaga
     1381 tatttggtta gtatcttttc aattataggc agattacaat taacatcctc agatattctt
     1441 acacttcctt tgccacgaac tcctttgtat ggaatattat catcgtctat acaatagtat
     1501 atgatgttgt ttctcctaag gttttgggtt ttcctagagg cttttccact ttctatgtaa
     1561 attttgtcat tgttattgtc aaaataatac catgtgggat gtatgttagg ttctcctttt
     1621 tcatctatgg tagagatgtg aacattcttt ttactattag tcaagaaatt cctaacttca
     1681 tcttctgtca taggaccacc aaattcaggt tcacttgcat taaggatttt catagcagtc
     1741 tatccaattg attgaaatat aaagagataa tatcatacct aatagaacat tgcaatagat
     1801 acctgaagat agccttttac aatttttggt acaagttatt ataattagca tatacttttc
     1861 atttggtttt ccttattcat atgttcacat aatattacat gagagatcat cattgtttga
     1921 aacctttcca agcttggaac aattgctcat actctggcga tgctggacca actaaaccaa
     1981 gttgcatcat aaaggtaaga tcatcacgga ttgccctgtg ttctactatt tttccatctt
     2041 cgccaattct gtggatatgt actgcttggt aagatatatc atgtcctgtt ggagcagcaa
     2101 tgccaaaaaa gtttcctaca tgttttccag ttacattcaa tatcgatata accttatcac
     2161 ctgaagcaat ggtctcttgt tcttcataat gaagatcagc aaaagcactt cgtagattct
     2221 tgacagtatc tataaactct tcgggtcctc ttagctttga cctgactgga tctacttggg
     2281 actcgtaatt aaagtattct ggacttatga attcatgaac tctgctcaca tctccagtgt
     2341 taagagcttc tcttaattga ttgacggttt taatattttt tgcttcttgt tcttcttctt
     2401 cggttccagt tgatgctata ttttctactt caccatctat catatcacta cttgtaatat
     2461 ttattccact agttgtcatg ctctcaccag ccatcacatt ctgagctgat gcatgaggaa
     2521 aaggaacaat gacatcaagg gttcctatgg ccataatggt tagtgctact ataacaattg
     2581 tagctgcagc agccgacaat tcctttggat tcattgcggc cttgccggat tcaaaagata
     2641 tgcaataatt gttttcttgc tttacttctt tgtctatctt tatgtttgat attattgctt
     2701 catctttttt ttctatcttt ttgatcgtat gaattttttc catttaattc actcaaagca
     2761 taaactatct ggaaaaaa
//
LOCUS       DATABJ010000009         3003 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1753146, whole genome shotgun sequence.
ACCESSION   DATABJ010000009 DATABJ010000000
VERSION     DATABJ010000009.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3003)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3003)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3003
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1753146"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..478
                     /locus_tag="VHF44_00160"
     CDS             <1..478
                     /locus_tag="VHF44_00160"
                     /inference="COORDINATES: protein motif:HMM:NF025939.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEX2123994.1"
                     /translation="KNYPMIEEKILALGIELPNAPRSAGSYVQVAITGNLVFVSGQLP
                     VEPGSIPMQVKFKGKVGKDISLEQGQEAARLCTINALAQLKSTLGSLEKIRKFVKVSG
                     FVNCDAAFSSHPQIINGASDFILQIFGEKGRHSRSAIGASSLPLDSAVEIEFIVEI"
     gene            910..2262
                     /locus_tag="VHF44_00165"
     CDS             910..2262
                     /locus_tag="VHF44_00165"
                     /inference="COORDINATES: protein motif:HMM:NF025017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX2123995.1"
                     /translation="MIILASFWFSTIPVAFLTLGRFLKNRNTFVEQDLRRIYNDPTII
                     FQITTRSATMTPVVKRGIDSIIDSSLKINYRNYQISIITDDPKDQVTLNDINCEVIIV
                     DKKFASSAIKKGRALQYAVEHRRKTGKNISNYWIFHMDDESYVTTQTIMSLLKFIREG
                     NAIASEGPIFYPLKFESANRLTAIAESIRPFTCYDCVSQMTNPPPLHMHGSNLLVRSD
                     IEDSIGWNFGPTLAEDQIFGYKIYEKYGPKSMGWHGGMLLEQPPLNIKDHFMQRRRWV
                     LGSLQNMVRFPLIHKFKLMFKLVTYFMGFVSGVVSTILYFHAYIPKLFLVLSISISEF
                     NLDIISWFDMVMKVFSSEATMNASINSGPLDPIIGLILLFPYTMWLFSYQLGLFLNLR
                     YSKISLIKRVALHLQTLLLSVVIGLLETFPAFYAMLEYYIRDRTNKMKKIYDFYVIKK
                     "
     gene            2701..2949
                     /locus_tag="VHF44_00170"
     CDS             2701..2949
                     /locus_tag="VHF44_00170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2123996.1"
                     /translation="MEADDNRGLEALAMIAKLVSNDNKSFKLLLYYISRRYKIYDILT
                     SQERKRLELELDNQVKTYREISKVSKNSCMWLGLFLTR"
BASE COUNT         1009 a          482 c          546 g          966 t
ORIGIN      
        1 taagaattat ccgatgatag aagagaaaat tctcgcttta ggcatagagt tacctaatgc
       61 cccacggtcg gcaggttctt atgttcaagt cgcaatcaca ggaaaccttg tctttgtttc
      121 tgggcaactc cctgttgaac ccggttcaat tcctatgcag gtcaaattta aagggaaagt
      181 aggtaaagac atatcactag aacaaggcca agaggccgca agactttgta cgataaatgc
      241 tcttgcacag cttaaatcta ctcttgggag cctcgaaaaa ataaggaagt ttgtcaaagt
      301 ctcaggcttt gttaattgtg acgctgcttt tagcagtcat ccccagataa ttaatggcgc
      361 atcagatttc attttgcaga tatttggtga aaaaggtaga cattcaaggt cagcgatagg
      421 agcaagcagc ctacctttgg atagtgcagt tgaaatagag tttattgttg aaatctagtc
      481 tacacaagag agcaaatatc gatttttcag ctttagcctt gagcaaaaaa ttctacagtt
      541 ctcctcagca aagataatat ctgtaagaat aatagcctct tttcttcaac aaacaaataa
      601 aagagttagc agacttactg tgagatgata gataatttta ctcatgtccg atgttatttt
      661 ttatggtatc ttgaatttta ttccgtataa gtgaagaaca ttgacctttt gtctaatttt
      721 acactatgat ttatagtatc tttctgacaa ggagagcaat cacacattca tattcagcac
      781 tgttcctttc tatatacgtt cttttgtgac ggatgaatta attcgctatt gagtttaaga
      841 cgggctttaa aaaggaatct tttataaaac aagagattcg ccagtaaggt gttgttagag
      901 aatgttgtga tgatcatact agcgtctttc tggttctcca ctatacctgt cgcctttctg
      961 acgctaggaa gattcctaaa gaatagaaat acttttgttg aacaggatct tcgccggatt
     1021 tataatgatc caacgataat ttttcagata accactcgtt ctgcgacaat gacaccagtt
     1081 gtaaaaaggg gaattgattc aatcattgat tcttctctaa aaattaacta taggaactat
     1141 caaatatcta tcattacgga tgatccaaag gatcaagtta cattaaatga tatcaattgt
     1201 gaagtcatta tagtcgataa aaaatttgca tcgtctgcaa tcaaaaaagg acgagcccta
     1261 caatatgctg tggaacatcg tcgcaaaacc ggtaaaaata tctccaatta ctggatattc
     1321 catatggatg atgaaagcta tgtaacaact caaacaatta tgtctttgct aaaattcatt
     1381 agggaaggga atgcaattgc atcagagggt ccaatttttt atccattaaa gtttgagtcg
     1441 gcgaatagat taacagctat tgcagaatct ataaggcctt ttacatgcta tgattgtgtt
     1501 tctcaaatga caaatcctcc tccattgcac atgcatggta gcaatctatt agtcagatca
     1561 gacattgaag attctatagg ttggaatttc ggaccaactc ttgcagagga tcaaattttt
     1621 ggctataaaa tttatgagaa gtatggtcca aagtctatgg gctggcatgg aggaatgttg
     1681 cttgaacaac ctcctctgaa catcaaagac cattttatgc agcgacgcag atgggttctt
     1741 ggaagtttgc aaaatatggt tagatttccg ctcatacata aatttaaact tatgtttaaa
     1801 ttagtaacat attttatggg atttgtttca ggtgtcgttt ctactattct ttatttccat
     1861 gcctatattc caaaactctt cttagtatta tcgatatcaa tcagtgaatt taatttagat
     1921 ataatatcat ggtttgatat ggtgatgaaa gtattttctt ctgaagcaac gatgaatgca
     1981 tcgatcaaca gtggtcctct tgatcctatc attggcttaa tcttactatt tccctacact
     2041 atgtggctat tttcatacca gttaggatta tttcttaatc taagatattc aaagatcagt
     2101 ttgattaaga gagttgcatt gcatttacaa acgctattgt tgtctgttgt catcgggctc
     2161 cttgaaacat ttcctgcatt ctatgcgatg cttgagtatt atattcggga tagaaccaat
     2221 aaaatgaaaa aaatctatga cttctatgtt ataaaaaaat aatgtcatga acacattctg
     2281 ttataaaata ttttcttgag caaatgcacc tatttatgat tgcacttaaa gcaggaggtt
     2341 tttgttatta gtaatcatgt tagataaaag tggtttagaa tactactacc ttattagcct
     2401 ctttaaaggg aaagaaatag aattgattga agatatagta atatcaagat atcaagaata
     2461 ccactataac tgcgaatgca gcaaaatatg acaatgaaag atattgttat gaagatctat
     2521 attctaaaag aaagatcaat ctaataacag aaggttcaga accacggtag tgggagtttg
     2581 taattcatag atgtatctgt atgagatcat aataagttgt tgtcagctat atatagcagc
     2641 catatatatg acaggaatat tagacataat ttgaattcaa ataccgtaca ttggtaacag
     2701 ttggaagcag atgataacag aggtcttgaa gcgctagcaa tgatagcgaa actggtatca
     2761 aatgataaca agagctttaa acttctatta tactatattt ctagaagata taaaatatat
     2821 gatatattaa caagccaaga aagaaaaaga cttgaactag aacttgataa tcaggtcaag
     2881 acttatcgcg agatatctaa ggtgtcaaag aatagctgca tgtggctagg actattttta
     2941 acaagataat tgaagagtga acgctaaaat atataatttc gtaatatatg ataattcaac
     3001 tac
//
LOCUS       DATABJ010000010         3137 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_10916, whole genome shotgun sequence.
ACCESSION   DATABJ010000010 DATABJ010000000
VERSION     DATABJ010000010.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3137)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3137)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3137
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10916"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            199..1215
                     /locus_tag="VHF44_00175"
     CDS             199..1215
                     /locus_tag="VHF44_00175"
                     /EC_number="1.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004412 - homoserine dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006520 - amino acid metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEX2123997.1"
                     /translation="MRLIVVGFGIVGQSLAKLLLSRSADLFSLYGIKPRIVACMDKGG
                     CAIAPRGLDIQRLLEVKRLKGTVGEYEKTSSRFDPLYVIEKMDAEMLIELTPTDIDSG
                     EPGTSNIISAMRSGKHIITVNKGPLALSFPSLMELANYNGVLLRFSGTVGGGTPILEF
                     AKRCLKGDRIISFKGILNGTTNYILSKMEEGLTFDSALNDAKQKGYAEAVPSLDIEGY
                     DAAAKLVIMANLIMGMKVTIKDINRTGISSVQVSDVQRAQERGNAIKLLAICDKKKLD
                     VRPTEVSKKDPICVDGTLNAVTFFSDHSGHQTIIGRGAGGMETGSAILRDLIEIKDTI
                     FEHR"
     gene            1480..2118
                     /locus_tag="VHF44_00180"
     CDS             1480..2118
                     /locus_tag="VHF44_00180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 family protein"
                     /protein_id="HEX2123998.1"
                     /translation="MEVQAKRKALAVLHDEISRILNSARDLSTLFASIMKGDNKDVQV
                     CLERMTNAEEVIENLRRKITREVAEIGSLMVSREDVLRTAYIVDDIAGFITGIAFRLS
                     NIRTSSLKKGNFDDDLRDLIGMAVDAVFKLNEMARALSINPASVIELAQEVQKLERQI
                     DAKYRAIIIKVLNELAVTKDILLLKDVVEGVEGMVDKCQEASDSITILALSM"
     gene            2118..2330
                     /locus_tag="VHF44_00185"
     CDS             2118..2330
                     /locus_tag="VHF44_00185"
                     /inference="COORDINATES: protein motif:HMM:NF014797.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2123999.1"
                     /translation="MNAVIGKLVENRIVIWEVEESRNIFGNGYYGKPLGISKPKGTQF
                     DAPLVIDLIEGCYLIQMGRLIAYHVD"
     gene            2337..2669
                     /gene="endA"
                     /locus_tag="VHF44_00190"
     CDS             2337..2669
                     /gene="endA"
                     /locus_tag="VHF44_00190"
                     /EC_number="4.6.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR00324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000214 - tRNA-intron endonuclease
                     complex [Evidence IEA];
                     GO_function: GO:0000213 - tRNA-intron endonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0006388 - tRNA splicing, via
                     endonucleolytic cleavage and ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-intron lyase"
                     /protein_id="HEX2124000.1"
                     /translation="MSLRALKALCRKQYIDFDNKYLVFRILRDGGYVVSPGVKFGCDF
                     AVYEHGPGIDHAPYLVQVFKQNDYLTATGIVLAGRLATTVKKQFILALPRIKERKVDF
                     IGFDWWRA"
     gene            complement(2674..>3137)
                     /locus_tag="VHF44_00195"
     CDS             complement(2674..>3137)
                     /locus_tag="VHF44_00195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124001.1"
                     /translation="PLDFPTTQMVKSHNNNKHVLKQSPSFPPIPVDLKGSENKIGLRE
                     FYADKKPSSHYEKTIVFVYYLTKFNKEEEIRLGKILSCYEEVDEKKPSITDIVKNTIR
                     YKGWLEYGYDKLSTRLTISGENFVKFDLPHKKKNILNDPISPSVSLNDPSQ"
BASE COUNT         1040 a          455 c          650 g          992 t
ORIGIN      
        1 atttttatat cttatacatg ataagttgtt atgacctgag ctactttttt catttcttaa
       61 cagattccaa tcttaaatta tagttgctgg tattgaatac tttatgtgag tcattgtcaa
      121 tgcaatatca tttagataag cggtcacaac aagtccagat ttaaacatat taagcccaaa
      181 tcgttattga gtattaaatt gcgattaatt gtggtgggct ttggcatagt gggtcaaagc
      241 cttgcaaaat tacttttatc tcgttctgca gacctgttta gcctttatgg tatcaaacct
      301 cgcattgtag catgcatgga taagggtggc tgtgccattg ctcctagagg tctagatatt
      361 caaagattgt tagaagtaaa aaggttaaag ggcactgttg gagagtatga aaagacaagt
      421 tcaagatttg atcctcttta tgtaattgaa aaaatggatg cagagatgct tattgagtta
      481 actccaacgg atatagattc tggcgaacct ggaacatcaa atatcatctc agcgatgaga
      541 tcgggcaagc atataattac tgtaaacaaa ggccctcttg cactatcttt tccatcgtta
      601 atggaattag caaattataa tggtgttttg ttacgtttta gcggaacagt aggaggtggt
      661 acaccgatcc tagagtttgc aaaacgatgt ttaaagggcg atcggataat ttcatttaaa
      721 gggattctta acggaactac aaactacata ctcagcaaaa tggaagaagg tttgacattc
      781 gatagtgcct tgaatgatgc aaaacaaaaa ggctatgcag aagcagtacc atctctagat
      841 atcgaaggat acgatgcagc tgcgaaactt gtaataatgg caaacttgat tatgggtatg
      901 aaagtcacca ttaaggatat caacaggact ggaatcagtt ctgttcaggt ttctgacgta
      961 caaagagccc aagaaagagg caatgcaata aaactcttag ccatatgtga taaaaaaaaa
     1021 ttagatgtac gaccaactga agtatcaaaa aaggatccga tatgtgtaga tggtacatta
     1081 aatgcagtca cctttttctc tgatcattca ggtcatcaaa caataattgg ccgaggagct
     1141 ggaggtatgg aaactggtag cgcaattctc cgagacctca tagaaataaa ggacacaatt
     1201 ttcgaacata gatagcaagt tgaaaacgaa aatacatacg tatgtaaaag agagaagaga
     1261 ttaacataca taataaaaca aaaaaatgtt ctttaatgat tcagtattta gttgtagact
     1321 atattgtaga tatctaatat ttaacattgt agctttttaa ttcattatag ctatagtatt
     1381 gttttataga tattataatt tttaaacgat ggatttatta taatgtcaaa aggattaaaa
     1441 gtctgatgaa gtagtttaca tgagatgtac agtggagaat tggaagttca ggctaaacga
     1501 aaagcattag ctgttttaca tgatgaaatt agtaggatcc taaattcagc tagagattta
     1561 tcaactcttt ttgcttctat tatgaaaggg gataacaaag atgttcaggt atgtctggag
     1621 cgtatgacaa atgctgagga agttatcgag aacctaagaa gaaagattac acgagaagtt
     1681 gctgaaatag gtagtcttat ggtgtctcga gaggatgtat tacgtactgc ctatattgtc
     1741 gatgatattg ctggatttat tactgggatt gccttcagac tatctaatat aagaacctct
     1801 tctttaaaaa aaggaaattt tgatgatgat ctgagagatc ttattggaat ggctgttgat
     1861 gctgttttca aattaaatga aatggctcgc gcattgagta taaatcctgc aagtgtgatt
     1921 gagctagccc aagaggttca aaagctggag cgccagattg atgctaaata tagagctatt
     1981 ataataaaag ttcttaatga gctggcagtc acaaaggata ttttactatt aaaagacgtg
     2041 gtagagggtg ttgaagggat ggtagataaa tgccaagaag catctgactc tattactatt
     2101 ctggcattga gtatgtaatg aatgctgtaa ttggaaaact agtagagaat agaatagtta
     2161 tatgggaggt agaagaatca cgaaatattt ttggtaatgg ttattatggc aaacctttag
     2221 gaatttcaaa gccaaaaggt actcaatttg atgcgccttt ggttatagat ttaatcgaag
     2281 gttgttatct aattcaaatg ggtagattga tagcatacca tgtcgattga cgacaaattt
     2341 cactaagagc cttaaaggca ctttgtcgaa aacagtacat tgattttgat aacaagtact
     2401 tagtattccg gatcttgagg gatggaggtt atgttgtatc tccgggagtc aaattcggtt
     2461 gtgattttgc agtatatgag catggacctg gcattgatca tgcaccatat ctcgttcagg
     2521 tattcaaaca gaacgattac ttaacggcaa ccggaattgt acttgcagga agacttgcta
     2581 ctacagtcaa aaagcaattc atattggcat taccaagaat aaaggagaga aaagttgatt
     2641 ttatcggttt tgattggtgg cgcgcttaag gaattactgt gacggatcat ttagagaaac
     2701 agaaggagaa atcggatcat taagtatatt ctttttttta tgcggaagat caaactttac
     2761 gaagttttct cctgagatgg ttaaacgagt agagagctta tcataaccat attctagcca
     2821 acccttatat ctgatagtgt ttttcacaat gtcagttata ctaggttttt tttcatctac
     2881 ctcctcatag caagacagta ttttaccaag tctaatttcc tcttctttgt tgaattttgt
     2941 caaataatat acaaagacta ttgtcttttc ataatgacta gatggctttt tatcagcata
     3001 aaattctcga agacctattt tattctcact cccttttaga tcaacaggta ttggagggaa
     3061 agaaggagat tgttttaaaa catgcttatt attgttatgt gattttacca tttgtgtcgt
     3121 tggaaagtca agaggtt
//
LOCUS       DATABJ010000011         3074 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_10956, whole genome shotgun sequence.
ACCESSION   DATABJ010000011 DATABJ010000000
VERSION     DATABJ010000011.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3074
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_10956"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(230..1159)
                     /locus_tag="VHF44_00200"
     CDS             complement(230..1159)
                     /locus_tag="VHF44_00200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreD"
                     /protein_id="HEX2124002.1"
                     /translation="MNNLEFYIPVDIPPEVLAYDSELKQLEVGKAGKLGALTLGLEGD
                     LERGKTVVKEQYSKVPLFTQRALYLEESIPSMAYIYIISPSGGILQGDRYRMDIKLKN
                     NAFSHITTQGATRVYRMENNFATQIVNVVVDDGCYFEFVPDQIIPYRNSRFYQTVNLN
                     VHDNATMVYSEIIVPGRVARGESFEYDICYMKALAKNQKERLRFIDIAILEPKKRNLK
                     TLGILGSFDVVGSMYILTMAKYVAELNEAINSSVQKFFKISGGATILPYNSGVLVRML
                     GSVASDLRNAMYEVIRITRKIILNASFSGIRKG"
     gene            complement(1178..1831)
                     /gene="ureG"
                     /locus_tag="VHF44_00205"
     CDS             complement(1178..1831)
                     /gene="ureG"
                     /locus_tag="VHF44_00205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016530 - metallochaperone activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0019627 - urea metabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory protein UreG"
                     /protein_id="HEX2124003.1"
                     /translation="MSTKRIPRVGIGGPVGSGKTMLIEQVVPILSSRGYRAGIISNDV
                     VSREDADRMRRNLATQKGLMPEDLVIGLATGGCPHTAVREDPSMNISVVEEMEAKHND
                     LDLIIIESGGDNITTTFSPALADYFIYIIDVSGGDKYPRKRGLGIESCDLLVINKIDI
                     APHVGADLGIMERDAKSVRGTKPYVFVNSRTGQGVKEVTEHIIRDVLFESPPKAIAK"
     gene            complement(1851..2555)
                     /locus_tag="VHF44_00210"
     CDS             complement(1851..2555)
                     /locus_tag="VHF44_00210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018050707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0006807 - nitrogen compound metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease accessory UreF family protein"
                     /protein_id="HEX2124004.1"
                     /translation="MSIDNMNIEEISILQLSDSFFPTGMYTTSNGLETLFYSKKIHNA
                     NELRDLIKVYVQHQIGPADCTALGNAYDYAEKSDLSKLLEVDQMIYSMKLIKEIRDAS
                     TRSGTQLLRCLTSFITDNKLMNEYQQAIKEGQATGVYSTVMAVASNALKIPKQKSAIM
                     MLYTFSVSIVGAALRLGMLQHFEGQRIIHELKPTILDTMIKNIDRPLISMWQFAPEID
                     IIQISHEKLDSKMFIT"
     gene            complement(2545..3060)
                     /locus_tag="VHF44_00215"
     CDS             complement(2545..3060)
                     /locus_tag="VHF44_00215"
                     /inference="COORDINATES: protein motif:HMM:NF014829.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124005.1"
                     /translation="MITIYSVIGNINKNANLKKKYDEMSEKNGCEAFQISRLESQRVR
                     MRKTSNKGTDIALILPQGTQLRHGDVIMVTEEKMVIVELEPENVAMIEIKDNIHDHDI
                     IKIPVRVGHTIGNLHRPLKLEGNKIYFPIQADSELELFRKLLAPIAGHLDINNTKMVF
                     EPEEGTEVHEH"
BASE COUNT          889 a          628 c          473 g         1084 t
ORIGIN      
        1 ctttttatat caaattttgc tatattaaaa tatgaacgca tttgataagc acagaaaaaa
       61 cttgacagct tggtgtgagg attgtaatga agtatttgat gtattatgga ctgccaatat
      121 gcaccgcgat caaaaaggac ataaaataaa agtaacagaa ttctggatca caggaagatg
      181 ataaatatat ctatgatagg tgtttccaaa ataaaaaatg attgttatcc tatcccttcc
      241 ttattccgct aaaggacgca ttaagtatga tctttcttgt tattcttatt acttcataca
      301 tagcatttct aagatcacta gcaacgctac caagcattct gactaaaacg ccagaattat
      361 aaggaaggat tgtcgctcct cctgaaatct taaaaaactt ctgtacactt gaatttatcg
      421 cttcatttaa ttctgccaca tattttgcca ttgtaagtat gtacatgctt ccaacaacat
      481 cgaaactacc aagtattcca agtgtcttca agttgcgttt cttaggttcc aatattgcga
      541 tatctatgaa ccttagtctc tctttttgat tctttgccaa agctttcata taacaaatat
      601 catattcaaa tgattctcct ctcgcaaccc tacctggtac tatgatttca gaatatacca
      661 tggttgcatt atcatgaaca ttcaagttaa ccgtctggta aaaacgagag ttcctgtaag
      721 gaattatttg atcaggaaca aattcaaagt aacaaccatc gtctacaacg acattcacta
      781 tctgtgttgc aaaattattc tccattctat aaactcttgt tgcgccttgc gtggttatat
      841 gtgaaaatgc attattcttc aattttatat ccattctgta tctatctcct tgaaggatgc
      901 ctccagaagg agatattatg taaatgtatg ccatcgaagg tatggactct tcaaggtata
      961 atgctctctg tgtgaacaaa gggactttcg aatattgttc tttgacaaca gtttttcctc
     1021 tttctagatc tccctctaat cctaatgtca gggctcctag ttttcctgct tttcctactt
     1081 caagttgttt taactctgag tcgtatgcta gtacttccgg aggtatatct accggaatgt
     1141 aaaattctaa gttgttcatt aatatattat gaccttgtca ttttgcaatc gcctttggag
     1201 gggattcaaa gagaacatct cttattatat gctctgttac ctctttgact ccttgacctg
     1261 tcctagagtt cacaaagaca tatggtttgg ttcctcttac agacttggca tctctttcca
     1321 tgatgccaag atccgcgcca acatgaggtg caatatcaat cttatttatt accaagagat
     1381 cacagctttc tatgccaagc cctctttttc taggatattt atcgccgcca gagacatcta
     1441 tgatatagat aaaataatca gctagtgctg gactaaatgt ggtagtaata ttgtcgcctc
     1501 cactttcaat tataatcaaa tcgagatcat tatgtttagc ttccatctcc tctactacag
     1561 aaatattcat tgatggatct tcacgtacag ctgtatgagg acatccacct gttgctaatc
     1621 caatcactaa atcctctggc atcaagccct tttgtgttgc taaattccgt ctcattctat
     1681 ctgcatcctc ccgagacact acatcatttg aaattatacc tgccctataa cctctagatg
     1741 ataatatagg aacaacttgc tcaattagca tggtctttcc tgaaccaaca ggaccaccaa
     1801 ttcctaccct aggaattcgt ttagtactca tataaaaaat tacgacatga tcaagtaata
     1861 aacatttttg aatccaattt ttcatgtgaa atctgaataa tatctatctc tggagcaaac
     1921 tgccacatgc taatcaatgg cctgtcaatg ttctttatca tggtatctag aatagtaggt
     1981 tttaattcat gtataattct ctggccttca aaatgttgta acatccctaa tcttaatgca
     2041 gctccgacta tgcttacgga aaaagtataa agcatcataa tagcggattt ttgctttggg
     2101 atctttagag cgttacttgc aacggccatt acggtagaat atactcctgt agcttgtcct
     2161 tcttttattg cctgttgata ttcgttcatt aatttattat ctgttatgaa tgatgtcaag
     2221 catcttaaaa gttgagtacc ggatctagtg gaagcgtctc ttatctcttt aataagtttc
     2281 attgaatata tcatttgatc cacctctaac aatttagaca aatcagattt ttccgcatag
     2341 tcataggcgt ttcctaatgc agtacaatct gctggaccaa tttggtgttg tacatacact
     2401 tttatcagat cacgcaattc atttgcatta tgtatcttct tgctataaaa taatgtttca
     2461 agaccatttg atgtggtata cataccagtt ggaaaaaaag aatcagaaag ttgtagtata
     2521 cttatttctt ctatattcat attgtcaatg ctcatgtact tcagtgcctt cttcaggttc
     2581 aaagaccatc tttgtgttat taatgtcgag gtgtccggct atcggtgcca aaagcttcct
     2641 aaataactcc aattcgctat cagcttgaat cggaaagtaa attttatttc cctctaactt
     2701 tagcggacga tgtaggtttc ctattgtatg cccaactctt actggtattt tgatgatatc
     2761 atgatcgtgt atgttatctt taatctcaat catcgcgaca ttctctggtt ccaattctac
     2821 tatgaccatc ttctcttctg ttaccataat aacatcaccg tgtcttagct gtgtaccctg
     2881 tggaagaatc aaagcaatat cagtaccttt gttagacgtc tttctcatcc tgactctctg
     2941 ggattctaat ctgctgattt gaaatgcttc acaaccattt ttctccgaca tctcatcata
     3001 ttttttctta agatttgcat tcttattgat atttccaatt accgaataaa tagtgatcaa
     3061 tttctattct tctt
//
LOCUS       DATABJ010000012         1555 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_11474, whole genome shotgun sequence.
ACCESSION   DATABJ010000012 DATABJ010000000
VERSION     DATABJ010000012.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1555)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1555)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1555
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11474"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(249..1034)
                     /locus_tag="VHF44_00220"
     CDS             complement(249..1034)
                     /locus_tag="VHF44_00220"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX2124006.1"
                     /translation="MVEITRGVHSIDDLGYPVPGVGFVSYIVEEKENDLTLIDTCFRS
                     ELPKLEDYIKNSGYELKQIRRIILTHVHIDHIQATNELRKKVAEDVKIYAHWIDAAYI
                     SQDPSYHGPPSHEQLKELFEKFGVKLEDLPKRFGPMTVDAIYIDEQIQDGDAIGSLKV
                     IHTPGHTPGHISLYSEKHRIIFGADFLFKSVFGTEGLFIPIIPNAIVSIDPITAAISA
                     KRISRVNFDKLLLAHQDSPVLENAQKEVEKAATEAIRNLKEQR"
     gene            1264..>1555
                     /locus_tag="VHF44_00225"
     CDS             1264..>1555
                     /locus_tag="VHF44_00225"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124007.1"
                     /translation="MGYSKQTDQGLRKEDEPTEVSYTVLRGISQRNISDILQKIVTAI
                     NVQLTLENGQGLPFVPSNGFDTTKHQDKLFIYGPSGCGKSRCIYEIIKDKLND"
BASE COUNT          526 a          273 c          267 g          489 t
ORIGIN      
        1 ctttttacga cattaataca aaagaagaaa gtatgttaag caacgagaaa attgatccaa
       61 ggattcaaga gatattagac tatcaagtcg cacatgaaca aatgctcaaa aaatggaaca
      121 tttgagctca gaaatagaac accagaatca gatagaatag agaagagata aagtgaaaga
      181 gctttgcagc aaaggctaca gccaactagg gattaacatt gatacgaata ggcagagcaa
      241 aaaaatagtt atcgctgttc ttttaaattt ctgatcgctt ctgtggcagc tttttcaacc
      301 tctttttgtg cattttcaag cacaggagaa tcttgatgtg ctaacaacag tttatcaaaa
      361 tttactctag atattctttt tgccgatatg gcagcggtaa tggggtctat tgaaactatc
      421 gcattgggta taatgggtat aaacaaaccc tctgtaccaa acacggattt gaaaagaaaa
      481 tcagcaccaa aaataattct atgcttctca gaataaagtg aaatatgtcc gggagtatgt
      541 cctggagtat gaattacttt taaactacca atcgcgtctc catcctgaat ttgttcatct
      601 atatatattg cgtcaacagt cattggtcca aatctcttag gcaaatcttc cagcttgacc
      661 ccaaactttt cgaataactc ttttaattgt tcatgtgatg gaggaccatg atatgaagga
      721 tcttgagata tatatgcagc atcaatccaa tgtgcataga tttttacatc ctctgcaact
      781 ttcttcctta gttcatttgt tgcctgaata tgatctatat gaacatgcgt tagtattatg
      841 cgtcttattt gcttcaattc atatcctgaa ttcttaatat aatcttctaa ttttggtaat
      901 tctgatctaa aacatgtatc aataagagtt agatcatttt ccttttcttc aacaatatat
      961 gaaacaaatc ccacaccagg tactggatat ccaaggtcat ctattgagtg aacacctctt
     1021 gttatttcca ccattctaac ttttgtgctc cactactaca acctataagt taaatttcat
     1081 tattagatgc atttatttgt ttattaaatg ataatttaag attattttgc actatacaaa
     1141 ccttacaata ctctaaagtt tactgaggaa ccaaacaaaa cagtaaaaca ttatagaaag
     1201 cgttctgtat aattattggt tagtagagcg tcacggtaac ttgttgtggg agaaggaagt
     1261 tgaatggggt actccaaaca aacggaccaa gggctgcgaa aagaggatga acctactgag
     1321 gtttcatata ctgtactgag agggatcagc caaagaaata ttagcgatat tcttcaaaag
     1381 attgttaccg ccattaatgt ccagttaact ttagaaaatg gtcaaggtct tccatttgtc
     1441 ccttctaatg gttttgatac tacgaagcat caagataaac tctttattta tggaccaagc
     1501 ggatgcggca aatccagatg tatctatgaa attatcaaag ataagttaaa cgata
//
LOCUS       DATABJ010000013         1509 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1754237, whole genome shotgun sequence.
ACCESSION   DATABJ010000013 DATABJ010000000
VERSION     DATABJ010000013.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1509)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1509)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1509
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1754237"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            503..1453
                     /gene="nadA"
                     /locus_tag="VHF44_00230"
     CDS             503..1453
                     /gene="nadA"
                     /locus_tag="VHF44_00230"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HEX2124008.1"
                     /translation="MMIQDRDYANEIFALKKEKNAIILAHNYQLPEVQDVADFIGDSL
                     ALSRHAAHTDAEHIVFCGVHFMAETASIICPDKRVLIPDLEAGCSLSSTINAEELKTW
                     IKEHPEAIVVSYVNTSAEVKALSDYCCTSSNAVKVVNSIPKDKEILFLPDMFLGSYVA
                     NVTKRKNMYIWPGECHVHAGIKAEDINKMLTTFKEADFLVHPECSCTSSALYHMATGD
                     LIKSGHILSTEGMMNHARKSHASQFVIATETGILHRMIKENPDKTFIPVKDDAVCKYM
                     KKINLKKVHNSLVNGIYEVKVPSKTAEKARLAIERMLVIS"
BASE COUNT          505 a          249 c          277 g          478 t
ORIGIN      
        1 atagttacca gaaatagatt gaactaactg ccaacacgtt tttgtctaca ttattttact
       61 tacatgaaaa acaatactgg atattctcaa tcctaagctc ttccaaattt agcaacctat
      121 attcaaaaag ctccttctct tgcgaatatt tctggtttgt atattatatc tatttgacac
      181 agacggacac gattatcttt acaagtttgg ataatgcttt actgtgactg tgtagaaaaa
      241 ccaaaaaata taagtataac agaagtaatc cattttatat tgtcttattc tttttttagt
      301 attaagaaga gagtttctag ctttagcttt tacttaagtt aatagagact taatattatc
      361 tcagcttttt tggtaaggct ttcgcgaatt actagatcat gtggcaagta ttgcccttaa
      421 cgtggatact aaaggcaagg ctatcctgga ttatactact ttaaatgtaa tagcaaagat
      481 gtagtattgt tatccaaaga aaatgatgat tcaagataga gattatgcga atgagatttt
      541 tgctttaaag aaagaaaaga atgcgataat cctcgctcac aattatcaat tgcctgaagt
      601 gcaggatgta gcagatttta taggagattc tctagcactt tcaaggcacg ctgcacacac
      661 ggacgctgaa catatagtct tctgcggcgt acattttatg gctgagactg cttcgattat
      721 atgtccagat aaaagagtgc ttattcctga tttagaagca ggttgttctc tatcatctac
      781 tattaatgcg gaagagttaa agacatggat taaagagcat ccggaggcca tagttgttag
      841 ttatgttaat actagtgctg aagtaaaggc attatcagat tactgttgca cttcttcaaa
      901 tgctgttaaa gtagttaaca gcattccaaa agataaagaa atattgtttt tgcctgatat
      961 gtttcttggc tcctatgttg caaatgtaac caaaagaaag aacatgtata tttggcctgg
     1021 cgagtgtcat gtccatgctg gaataaaggc agaagacatc aacaaaatgc ttacaacgtt
     1081 taaagaggca gattttttag ttcatccaga atgtagctgt acatcatccg cgctatatca
     1141 tatggccact ggcgatttga taaaatctgg tcacatttta tcgaccgaag ggatgatgaa
     1201 tcatgccaga aaatcacatg caagtcaatt tgtaattgct accgaaacag gaattctcca
     1261 tagaatgatt aaggagaacc ccgataagac atttattcca gtaaaagatg atgcggtttg
     1321 taaatatatg aaaaagatca atctaaagaa ggttcataat tctctagtaa acggtatata
     1381 tgaagttaaa gtcccctcta aaacagcaga aaaagcaaga ctagccattg agcgtatgct
     1441 agtaatatca tgaaatgtga cctctggaga agcatttcat taaaacttgg tctcttcaaa
     1501 tgcttttct
//
LOCUS       DATABJ010000014         4255 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_11993, whole genome shotgun sequence.
ACCESSION   DATABJ010000014 DATABJ010000000
VERSION     DATABJ010000014.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4255)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4255)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4255
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_11993"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(85..1221)
                     /locus_tag="VHF44_00235"
     CDS             complement(85..1221)
                     /locus_tag="VHF44_00235"
                     /inference="COORDINATES: protein motif:HMM:NF044739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124009.1"
                     /translation="MVNVNNKKILLQTLKSNYNLCKYCLKRHIPSVKLTHKSGQENCF
                     ICHGMMDNIDVINTKILSTVNNVYEFDSFLIGATIPTEYYEREDQIRAKFKIRGKENL
                     KIQLIRELRKKFLKITKTRLDFLMPDISINISIDKNNNVEVIARTRPLHFFGRYLKKH
                     RGIRQKQTKCSSCQGKGCLACDYSGLSGYDSIEGIIAKRLISITEGQNPKFTWVGSED
                     EESIVLGKGRPFFASISNPRNRKLENNFKFSENGILVTLRRKSDNVIGSSLAFITKIK
                     ILVQCDRALTKADIENIKVYGGSIVKFETKSRQFSKRIYSLKVQKIDSNRFAITVITD
                     GGFQVKQFIGEREYAKPNISDIFDSNCRCISFDNLEVDIQKHFI"
     gene            complement(1214..2581)
                     /locus_tag="VHF44_00240"
     CDS             complement(1214..2581)
                     /locus_tag="VHF44_00240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle receptor subunit
                     alpha"
                     /protein_id="HEX2124010.1"
                     /translation="MLDNLRTGLRTALKKIVGASDVNEELIESLCKDVQRALLQSDVN
                     VRLVLTITNNLKSRAINEAPPKGLSKKDHIITILYGELAKLLGYKGETIKSVDKSVDL
                     DEQIVSFKPGKQNVVLMLGVQGSGKTTVTAKFARWLMRHGYRVAVIAADTWRPGALTQ
                     LKMICSKINVEVFGDENNKDAIEIVRDGLKYYNTQNIDVIIIDTAGRHKEENELLEEM
                     NSMYKVALPDLVLLVVDGTIGQQAYNQAKAFHETAPVGGIIITKLDGTAKGGGALAAS
                     AATGARVMFIGTGERVDDLEQFSPTRFVGRMLGMGDIKALLDMAKSLEVQADESQAKR
                     LLGGKMTIEDFYGQMENVGKMGFKNVIDNLPGLSGMVKEEQLDALQGKMEKWRFIIQS
                     MTKDEKRNPDIINDSRRKRIARGSGITEHDVKELIKQYNNSKTMMKQTKGRQMQGMLR
                     RFGIG"
     gene            complement(2588..3274)
                     /locus_tag="VHF44_00245"
     CDS             complement(2588..3274)
                     /locus_tag="VHF44_00245"
                     /EC_number="6.3.1.14"
                     /inference="COORDINATES: protein motif:HMM:TIGR00290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0017178 - diphthine-ammonia ligase
                     activity [Evidence IEA];
                     GO_process: GO:0018193 - peptidyl-amino acid modification
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="diphthine--ammonia ligase"
                     /protein_id="HEX2124011.1"
                     /translation="MRLVSLFSGGKDSTFSIFKMKEIGHEVVCLITIQPQTDDSLLFH
                     YPNSALTKQLGEAMGIPSFRFALNKSTKEEEVNSLEYAIKKIKSIHNIQGLVHGGISS
                     IFQKNNFQIACSKQGLEIFTPLWGVEPFRYMHDLIDQKFCIKIVGVSTMGLDESWLGM
                     TLDNNSLYKLKRLSKKYGFNITFEGGEAETLTLDCPLFKKRLKIKDARTHWDGQRGIF
                     EILEVALISK"
     gene            3628..4224
                     /locus_tag="VHF44_00250"
     CDS             3628..4224
                     /locus_tag="VHF44_00250"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX2124012.1"
                     /translation="MISTGDNNAKSFLSMPVSSILQRNVAILDRFQTAADAITAMRDL
                     SVRSVLVADTKKEIIGLVSKTDILYRLLSLHKLPARTRLEEIMSSPIISVPPEVTILD
                     ALAAMEKHNIRQLVVSSGSKVYGTISREDIIIKTEKAVVQTVNSFKLDSAVCIMSPFA
                     STSLMNKRDGLTCPHCSNQYNNKELLSKHVKVIHSDSK"
BASE COUNT         1253 a          833 c          649 g         1520 t
ORIGIN      
        1 tcaggttagt gtccactgta taatgaatcc tctagtattt gcaaagaatt aaaaaccatc
       61 tggatactct aaaactgaga tagtctaaat aaaatgtttc tgtatatcta cttcaagatt
      121 atcaaaggaa atacatctgc aattagaatc gaaaatatct gaaatattgg gtttggcata
      181 ctctctttct ccaatgaatt gcttgacttg gaatccacca tctgtgatga ccgtgatagc
      241 aaaacgattt gaatctattt tttggacctt gagtgaatag attcttttac taaattgcct
      301 tgatttggtt tcaaatttta ctatagatcc accataaact ttgatatttt ctatgtcagc
      361 ttttgtcaga gctctgtcgc attgtactaa aattttgatc tttgtgataa atgcaagaga
      421 agaacctata acattatctg acttgcgcct tagtgtaact agaattccat tttcactgaa
      481 tttaaaatta ttctccaatt tacggtttcg tggatttgat atacttgcaa aaaacggcct
      541 tcctttccct aaaactatgc tttcttcatc ctcacttccc acccaggtaa atttaggatt
      601 ttggccttct gttatcgata ttagcctctt tgcgatgatc ccttctatac tatcataacc
      661 tgataggcca gaataatcac aggctaagca accttttcct tgacagctac tacattttgt
      721 ttgtttctgt cttatacctc gatgtttctt taaatatctg ccgaagaaat gcaacggacg
      781 ggtccttgcg attacttcta cattattatt cttatcgata gatatattta ttgagatatc
      841 aggcattaaa aagtcaagtc ttgtttttgt tatttttaga aatttttttc tcaactctct
      901 tattaattgg attttaagat tctctttccc tcttatcttg aatttagccc taatttggtc
      961 ctctcgttca taatattcag tgggaattgt tgctccaatt aaaaaactat caaattcata
     1021 cacattattt actgttgata aaattttggt attaattaca tctatattat ccatcattcc
     1081 atggcatata aagcaattct cttgacctga tttatgagtc agtttaactg aaggaatatg
     1141 tcttttaaga caatatttgc aaagattgta gttgcttttt agcgtttgta gaagaatctt
     1201 tttattgttg acattaacca ataccaaatc tccttaacat tccttgcatc tgtctaccct
     1261 tagtctgttt catcattgtt ttggaattat tgtattgctt tatgagctct ttgacatcat
     1321 gttcagttat accagaacct cttgctattc gcttcctcct agagtcatta attatatcgg
     1381 gatttctttt ttcatcttta gtcattgact gaataataaa tctccatttt tccatcttgc
     1441 cttgaagagc atctagctgt tcttctttta ccatacccga tagaccaggc agattgtcga
     1501 ttacattttt aaatcccatt ttaccaacat tctccatctg tccataaaag tcctctatag
     1561 tcatcttgcc tcctaataat ctcttggctt gactttcatc tgcttgcact tcaagacttt
     1621 ttgccatatc aagcagggct ttaatatctc ccattccaag cattctacca acgaatcgag
     1681 tgggtgaaaa ctgttccagg tcgtcaactc gttctcctgt accaatgaac atgactctcg
     1741 ctccggtggc agcggacgcc gcaagtgctc ccccaccttt ggctgtccca tcaagttttg
     1801 ttataattat tccaccaaca ggcgcagttt catggaaggc tttggcctgg ttgtaggctt
     1861 gttggcctat tgttccgtct actactagta aaaccaaatc gggtaatgcc actttataca
     1921 tagaattcat ttcctctaaa agttcattct cttctttgtg tcttcctgca gtgtcgataa
     1981 ttataacatc tatattctgt gtattgtagt atttcaagcc gtctcttacg atttcaatag
     2041 catctttgtt attttcatct ccaaatacct caacattgat tttactacaa atcattttta
     2101 actgagtaag agcaccaggc ctccaagtat ctgctgcgat tactgcaacc cgataaccgt
     2161 gtctcattag ccatcgagca aatttggcag ttacagttgt ctttccactg ccttgaacac
     2221 caagcatcaa aacgacattt tgctttccag gcttgaaaga gacgatttgt tcatccaaat
     2281 ccaccgattt atcaacgctt tttattgttt ctcctttata gccaagtagt tttgcaagtt
     2341 ctccatatag aatagtaatt atatgatctt tttttgacag accctttggt ggtgcttcgt
     2401 tgattgcccg gcttttgaga ttattggtta ttgttaagac taatctaaca ttgacgtcag
     2461 attgaagcaa tgccctttgt acatctttac acaaagattc aatgagctct tcattaacat
     2521 cagatgctcc tactattttt ttaagagctg ttctaagacc tgttcttaaa ttgtctaaca
     2581 cgacagatta cttggatatt aatgcaactt ccaatatttc aaatattccc ctttgtccat
     2641 cccaatgagt tctggcatcc tttatcttta atcttttctt aaacagagga cagtctagag
     2701 ttaaagtctc ggcttcccca ccctcaaaag ttatgttaaa tccatatttt ttgcttaaac
     2761 gttttaactt atataaagaa ttattatcca atgtcattcc aagccaactc tcatctaatc
     2821 ccatagtaga aacaccaacg attttaatac agaatttctg atcaataaga tcatgcatat
     2881 atcgaaaagg ttctactccc catagtggag taaatatttc aaggccttgt tttgaacagg
     2941 ctatctgaaa attgtttttt tgaaagatac tagatattcc cccgtgaact aatccttgaa
     3001 tattatggat agattttatc tttttaattg catattcaag tgaattaact tcctcttctt
     3061 ttgttgattt attaagggca aatctaaagg atgggatacc catggcttct ccaagttgct
     3121 ttgtcagcgc gctgtttggg tagtgaaata ataggctatc atctgtctga ggttgtatag
     3181 taatcaaaca tactacttcg tgtcctatct ccttcatctt aaatattgaa aaagtactgt
     3241 cctttcctcc agagaaaagt gaaacaagcc tcatgttaat aatgaaaaga tcgcctttat
     3301 taactgcatg atgatataat gacgatttaa tctaaaataa ataatctatt agatgataaa
     3361 tttacagcgc atttatatca ttactgagca gttgatgagc tataattatc tgacgatata
     3421 caattaaaca tttactcata aattacttgt ttaagaaaat ttctcaacca tatctgatag
     3481 gtattgacct ttaaatcgtt ccaatacttt caactgcttt tgtggttgaa tagaataagt
     3541 taaagatata accacgaagt ttgtgtatga tgtcagctgc aattattaga atacaacttt
     3601 aaataatcca cagaccattg aatattattg atttctacag gagataataa tgctaaatca
     3661 tttttatcta tgcctgtttc atcaatattg cagcgaaatg tggcaatttt agatcgattt
     3721 caaacagcgg cggatgctat aactgctatg cgagatctct ccgtccgctc tgttttagta
     3781 gcagatacaa agaaggaaat aataggcttg gtatctaaaa ctgatatctt gtatcgatta
     3841 ctatcattgc ataaattacc agcgcgtaca cgacttgagg aaataatgtc ctcgccaata
     3901 atatcagtac caccggaagt gaccatttta gatgcactcg ctgcaatgga aaaacataat
     3961 ataagacaac tagtagtaag ttcaggttct aaagtctatg gtactataag tagagaagat
     4021 attattataa aaacagagaa agcggtggta cagaccgtaa attcattcaa attagattcg
     4081 gccgtctgta taatgagtcc gtttgcttcc acatctctta tgaataaaag agatggattg
     4141 acttgccctc attgcagtaa tcaatataac aacaaagaat tgttgtcaaa acacgtaaag
     4201 gtaattcatt ctgacagtaa gtagaattcc aatgatcttt tctttcattc tctag
//
LOCUS       DATABJ010000015         6114 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_448354, whole genome shotgun sequence.
ACCESSION   DATABJ010000015 DATABJ010000000
VERSION     DATABJ010000015.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6114)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6114)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6114
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_448354"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            455..1264
                     /locus_tag="VHF44_00255"
     CDS             455..1264
                     /locus_tag="VHF44_00255"
                     /EC_number="2.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020266229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate
                     synthase"
                     /protein_id="HEX2124013.1"
                     /translation="MLLLNMVFGRDIRLTRILKEGKMLCIPMDHGISNGPIQGLENIH
                     DMIYQCENAGLTCVLVNKGVIKTMPRPPKIGLIVHFSGSTSIGPAPNRKILMGSLEEA
                     LRLGADAVSIHINIGSKEEPEMLQKLGTISDKCDEWSVPLVAMMYPRGENVKNPYDPD
                     IVAHVARIGAEAGADIVKTVYTGDSDSFRRVIKSCPVPVVIAGGPKANSDEEIIEMCA
                     GAMKAGAKGVTFGRNIFQYQNPPAIVNALHKVIVQGINTKEVLRDLAKYKE"
     gene            1245..2306
                     /locus_tag="VHF44_00260"
     CDS             1245..2306
                     /locus_tag="VHF44_00260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003856 - 3-dehydroquinate synthase
                     activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0009073 - aromatic amino acid family
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase II"
                     /protein_id="HEX2124014.1"
                     /translation="MQNTKSREIIINPTVPPSNLNDFLSRLNNITIIKADPKHVQAKN
                     FKIIFESSDADLVICKTIPEIQEFKSIGKVAGFLKRVSNNDDIDEIGRASQAGADFVI
                     VEAEDWKIIPLENVIAQLHKSNTKVYTTAKNADEIRTMFSVLELGVDGVIFSTDNEKA
                     VDELRDYLEAFVFPIKSAKILDVRDVGTGERVCVDTTSMLQLGEGMLIGSKSNFLFLV
                     HNESVGSSFTSPRPFRVNAGAVYCYTVMPDGKTKYLSEIEAGSEVLIVKNNGSSRRVT
                     VGRSKIETRPLRLIRADIEGETGTIILQNAETIRFIKSDGTLLPITEARVGEEILCYI
                     KPPSGRHFGMEVKEFIVEK"
     gene            2402..3283
                     /locus_tag="VHF44_00265"
     CDS             2402..3283
                     /locus_tag="VHF44_00265"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEX2124015.1"
                     /translation="MLVQQNIVNEIITGNCKEILSRIPANSIQLTITSPPYRNAIDYN
                     MHVSGNGEYYRGRTKLETSEYLEDMVEIFNDKVYRVTNNGGYCCIVIANEVTNGTLLP
                     LPHMLLSRLIQPFGNWNLHEEIIWHKVTGGTNRYGSFVINPYPKYYRANIMHEFILVL
                     RKGDVNSGRTQRIEMLPATHEEWTKEIANSIWHIAPVPPGYIEHPCPFPEEIPYRLMK
                     LYSYEGDIILDPFNGSGQTTKVAFHFQRRYVGIDTVKEYTKLAKGRLDDEPLHIRPEA
                     LIANWKKIPSHHTRRLR"
     gene            3325..3474
                     /locus_tag="VHF44_00270"
     CDS             3325..3474
                     /locus_tag="VHF44_00270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="C2H2-type zinc finger protein"
                     /protein_id="HEX2124016.1"
                     /translation="MAAATSSNRKSPRSYRCDICGRNFDNIEELNSHKRIEHGETSKP
                     PAGVG"
     gene            3558..4268
                     /gene="aroD"
                     /locus_tag="VHF44_00275"
     CDS             3558..4268
                     /gene="aroD"
                     /locus_tag="VHF44_00275"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: protein motif:HMM:TIGR01093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003855 - 3-dehydroquinate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HEX2124017.1"
                     /translation="MSRICVSIAAYDLEQLKRQINQAFNYGADYVEIRFDFLNLSDMD
                     QAMSISNMINKKAVYTLRAPDEGGQFKGSITQRIAWLKKLAASKPMLLDVELNTIKYN
                     TCLTDYLKAQNVSLLISWHDFEKTPQDAELIRLLNEMGTYSQNIKMVATAQTSVDSLR
                     LLDLYENARELNLIAFAMGDAGVISRVLCVIIGNAPFTYAALEKAISPGQLTIKQMRK
                     LYDRINDQLNQTTNAKPS"
     gene            4252..5097
                     /locus_tag="VHF44_00280"
     CDS             4252..5097
                     /locus_tag="VHF44_00280"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEX2124018.1"
                     /translation="MQSQVKTYCIIGDPVYHSLSPSMHNAAFNSLGLNCTYIAFRVPK
                     GQLEESINALRAVGISGFNVTIPHKVDILKYVDHLDSTAVKATAVNTVHNVNGILKGY
                     NTDIFGFIEPLRKRNINFNGMDILLLGAGGSAYAVIAALSEEKGINKIIISNRTQEKA
                     SKLAKKGKDLGLECQVIEMENIKDIAVKSHLIVNTTPIGMNDEQSLIDYEHISKNTIV
                     YDLVYKPVTTNLLENAKYAEAEVVYGYEMLLEQGARAFEIWTNMQAPRQTMRKSLVGD
                     IGEPV"
     gene            5094..5948
                     /locus_tag="VHF44_00285"
     CDS             5094..5948
                     /locus_tag="VHF44_00285"
                     /EC_number="2.7.1.71"
                     /inference="COORDINATES: protein motif:HMM:TIGR01920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004765 - shikimate kinase activity
                     [Evidence IEA];
                     GO_process: GO:0009423 - chorismate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEX2124019.1"
                     /translation="MKVIVKATMHGAISIVNAIATGKGSALGISLKVVAEVKINDGQG
                     INFPDNKADKLINNIIHYTIPKDIIENNSISIKIYSDIPAGWGLKSSSAVSNALALAC
                     YMIGKDEIDDYLILESAVRASRDAKVTITGAYDDSTACYFGGFVTTDNYLNKLIHRER
                     VQDDLFVVIFLPHNIKRGKIYNLKILSDLFLDAFKIAEKGEYWKAMKMNGVLTSAAFS
                     TDYEPILSALEEGALSASISGNGPSISAICYKDNITNVKSAFSKFNGNILVSTVNNEK
                     ASVEKLVG"
BASE COUNT         2146 a          961 c         1215 g         1792 t
ORIGIN      
        1 tttgatcagg tttacttctt gttttattct aaacgatcgt tttctggtca ttctatcaag
       61 aattcaacaa atatactatc ttcttagaat agaatgtaac tgaacaaaaa gaaataaatc
      121 tttacatacc tatatattga taaattatag ttttcaataa attacttggg ctgcctgaga
      181 atgttttcta aatatgtaaa tccgctgata taacgtggct acttacctta tatcatctat
      241 gcataattaa taggaagatt taatgctaaa ttgactgata gcctcttata gaatcatgta
      301 tcccatatac gcattctata tattatattt ggttacctaa gactcggcta agggtaagca
      361 catatttgga gtggctagtt gttctatgat tgcgatatgg ttttaaacta ttcttatcta
      421 tagaaacata tcacttttta agtgagtttg taagatgctc ttgttaaata tggtttttgg
      481 cagagacata agactgacta gaatattaaa ggaggggaag atgctctgca ttcctatgga
      541 tcatggtatt agcaatggtc ctatccaagg gttagaaaat attcacgata tgatatacca
      601 atgtgaaaat gcaggtttaa cctgtgttct tgttaacaaa ggagttataa agactatgcc
      661 aagacctccg aaaataggtt tgattgtgca tttctctgga agtacctcta tcggccctgc
      721 cccaaacagg aagattttaa tgggaagctt agaagaagca ttgagattag gagccgatgc
      781 tgtatcaatt catattaata ttggatccaa agaagaacca gagatgctcc agaagttggg
      841 gacgatttct gataaatgtg atgagtggag cgtaccgctc gtagcaatga tgtatccgcg
      901 cggtgagaat gtcaagaatc cttatgatcc agatattgta gcccatgtag cgagaatagg
      961 tgcagaggca ggagctgata tcgtcaagac agtttacact ggtgatagtg attcttttag
     1021 aagagtaata aaaagctgcc ctgtgcctgt tgtgatagca ggaggaccca aggcgaatag
     1081 tgatgaagaa ataatcgaga tgtgcgcagg agcaatgaaa gcaggtgcga aaggtgttac
     1141 atttggtcgt aatatattcc aatatcaaaa cccgccagca attgtaaatg cactacataa
     1201 agtgatcgta caaggaatca atacaaaaga ggtgttaaga gatcttgcaa aatacaaaga
     1261 gtagagagat tataataaat ccaacggttc caccatcaaa tctaaatgat ttcttatcca
     1321 gactaaataa tattacaatt ataaaagcag atccaaaaca tgtacaagca aaaaatttca
     1381 aaataatttt cgagtcatca gatgcagatt tagttatatg caaaacaatt ccggaaatac
     1441 aagaatttaa gtctattggg aaagttgcag gatttctcaa aagagtttca aataatgatg
     1501 acattgatga aattggcagg gcttctcaag ctggtgcaga ctttgtgatt gtcgaagcag
     1561 aggactggaa aataatacct ttagaaaatg tgattgctca actccataaa tcaaatacta
     1621 aagtctatac tactgccaaa aatgcagacg agatcagaac aatgttttca gttttagaat
     1681 tgggtgtaga tggtgtcata ttctcaactg ataatgaaaa ggcagtagat gaattaaggg
     1741 attatctaga ggcttttgtt tttccaatta aatcagcaaa gattttagat gtaagagacg
     1801 tagggacagg cgaacgagtc tgtgtagata ctacctcaat gcttcaattg ggggaaggta
     1861 tgcttattgg aagtaaatct aactttttat tccttgttca taatgaatcg gtcggatcct
     1921 catttacatc tccaagaccc tttcgggtaa atgcgggtgc agtatattgt tacaccgtaa
     1981 tgcctgatgg aaaaactaaa tacctttcag aaatagaagc aggaagtgaa gtattaatag
     2041 ttaaaaataa tggcagttcg agacgtgtta ctgtaggaag atcaaaaatt gagacccgtc
     2101 ctttaagatt aattagagca gatattgaag gtgagactgg aactataatt ctgcagaatg
     2161 cagagacaat aagatttata aaaagtgatg gtacgctgtt gccaataaca gaggcgagag
     2221 taggtgagga aatactctgt tatatcaaac ctccgtcagg caggcatttt ggaatggaag
     2281 taaaagagtt catagtagag aaataaaaaa gactgacaca cttggaaaat aatatttctt
     2341 tatcggaaag ttgattattt taaagtatac aggatattga caaatctata gcgtttagtt
     2401 aatgctagtt caacaaaaca ttgttaacga aataattaca ggtaactgta aagaaatttt
     2461 atctagaatt ccagctaact cgatccaact gactattact tcaccaccat atagaaatgc
     2521 tattgattat aatatgcacg tatctggaaa tggtgaatat tatagaggtc gaacaaaatt
     2581 agagaccagt gaataccttg aggacatggt agagatcttt aatgataaag tatatcgagt
     2641 gacaaacaat ggaggatact gctgcatagt tattgctaat gaagttacta atggaacatt
     2701 attgccattg cctcatatgc ttttatcgag gcttatacag ccatttggta attggaacct
     2761 acatgaggaa ataatatggc acaaggttac tggaggtaca aaccgatatg gatcgtttgt
     2821 cattaatcca tatccaaagt attacagggc taatattatg catgaattta ttcttgtgtt
     2881 aagaaaagga gatgtaaata gcggtagaac acagcgtata gaaatgcttc cagcaacgca
     2941 cgaagaatgg acaaaagaaa ttgcaaactc aatatggcat attgctcctg ttcctccagg
     3001 atatatagaa catccatgtc catttcccga ggaaatacca tatcgactga tgaaattata
     3061 ttcatatgaa ggtgatatta tcctcgatcc gttcaacgga agcggacaaa caactaaggt
     3121 agcttttcat tttcaacgcc gatacgtagg aatagacaca gttaaggaat atacaaaatt
     3181 ggctaaggga agactcgatg atgaaccttt acatataaga ccggaggcct taatagcgaa
     3241 ttggaagaag atcccatcac atcatacccg tcgcctccgc taatctttca catttaatta
     3301 ttagttattc cttcaaatac aattatggct gcggctacat cgtcaaatag aaaatcacct
     3361 agatcatacc gatgtgatat ttgcgggaga aattttgata acattgaaga attgaatagt
     3421 cataaaagaa tagaacatgg cgagacaagt aaacctccag ctggagttgg ataagagaag
     3481 gatataagaa atgtatagtt ttaaaagtaa tatcctttca aaagcaatta attttacttt
     3541 tattatacga tatttgtttg agtagaatat gcgtatcaat agcggcttat gatttagaac
     3601 aacttaaaag acaaataaat caggccttta attatggagc agattatgtc gaaattcgtt
     3661 ttgactttct gaatttatct gacatggatc aagcgatgag tatttctaat atgataaata
     3721 aaaaagctgt atatactctg agagcccctg atgagggcgg ccagtttaaa ggaagtatta
     3781 ctcaaagaat tgcttggtta aagaagttgg ctgcttcaaa gccaatgcta ttagatgttg
     3841 aactaaatac aattaaatat aatacttgtt tgacggatta tctgaaagca caaaatgtct
     3901 cattattgat ttcttggcat gattttgaaa aaactccaca agatgccgaa ctcataagac
     3961 tcttaaacga aatgggaaca tacagccaaa acatcaagat ggttgcaact gcgcaaacaa
     4021 gtgtagattc cttgcgtttg ctcgatttat atgaaaatgc tagggaatta aatttaattg
     4081 cgtttgctat gggtgatgcc ggtgtaatat ctagggtgtt atgtgtgatt attggaaatg
     4141 ctccatttac ttatgctgct ctagaaaaag ctatatctcc tggtcaattg accattaaac
     4201 aaatgagaaa gttatatgac agaattaatg atcagttaaa ccaaaccacc aatgcaaagc
     4261 caagttaaga cgtattgtat aatcggagat cctgtctatc attcattgtc tccgtctatg
     4321 cataatgctg ccttcaactc attgggtcta aattgtacgt atattgcatt tcgagttcca
     4381 aagggacaac tggaagaatc aataaacgcc ttaagggcag tgggaatatc cggtttcaat
     4441 gtcacaatac cacataaagt agacatatta aagtatgttg atcatcttga ttctactgct
     4501 gtaaaggcaa ctgcggtaaa taccgtacat aatgttaatg ggattctaaa aggctataac
     4561 acagatatct ttgggtttat agaaccattg cgaaaacgga acataaattt taatgggatg
     4621 gatattcttt tattaggagc tggaggaagt gcttacgcag taattgctgc gctgtccgag
     4681 gagaaaggaa taaacaaaat aataatttct aatagaacac aggaaaaagc ttccaaatta
     4741 gcaaaaaaag gtaaggacct tggcttagaa tgtcaagtta tagaaatgga aaatatcaaa
     4801 gatattgctg tcaaatcaca tctgattgta aatacaactc ctattggaat gaacgacgaa
     4861 caaagcctaa tagattatga acatataagc aagaacacca ttgtttatga tcttgtctat
     4921 aagccagtta ccactaattt actagaaaat gcaaaatatg ctgaagcaga ggttgtatat
     4981 ggatatgaaa tgctgcttga gcaaggtgca agagctttcg agatatggac taatatgcaa
     5041 gctccacgcc aaacaatgag aaagtcattg gttggagata tcggagaacc tgtatgaagg
     5101 ttatcgttaa agccacaatg cacggggcaa tatctatcgt taatgctatt gcgacgggca
     5161 agggatccgc tttaggaatt tctttaaaag ttgtagctga agtaaaaata aatgatggtc
     5221 aggggataaa ctttcctgat aataaagcag acaaattaat aaacaatatc attcactaca
     5281 ctattccaaa agacataatt gagaacaact cgatatctat aaagatatac tcagatattc
     5341 ctgcaggatg gggattgaaa agctcaagcg cagtttccaa tgcgctagca ctcgcatgct
     5401 atatgatcgg taaagatgaa atagatgatt atttgatttt agaatcagct gtaagagcat
     5461 caagagacgc gaaggtcacg attactggag cttatgatga ttctacagct tgttactttg
     5521 gaggttttgt tactactgat aattatctaa acaaattgat tcacagagaa agggttcaag
     5581 atgacctatt tgtagtaatt tttcttccac ataatatcaa aagaggaaag atctataatt
     5641 tgaagatatt gtcagatctt tttttggatg cttttaaaat agctgaaaaa ggcgaatatt
     5701 ggaaagccat gaaaatgaat ggtgtcctca cttctgctgc atttagcacc gactatgaac
     5761 ccatactctc agctttagaa gaaggtgcat tatctgcaag tatttctggt aatggacctt
     5821 caatatctgc aatatgctac aaggataata taacaaacgt taaatccgca ttttcaaagt
     5881 ttaatggtaa tatcttagtg tctactgtca ataatgaaaa ggcaagtgta gaaaaattag
     5941 ttggttaatg ttcaagtaaa gagatcaaaa attaatggta ccattagatg tccatcaagc
     6001 aaaagctata cgcaccgtgc tatcgtcatc gcttcacttg ttgaaacccg atctgttatt
     6061 acaaatatat tgattgccag agatactctt gcaacgctga atgcctgtag atcc
//
LOCUS       DATABJ010000016         1760 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_12393, whole genome shotgun sequence.
ACCESSION   DATABJ010000016 DATABJ010000000
VERSION     DATABJ010000016.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1760)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1760)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1760
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12393"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..598)
                     /locus_tag="VHF44_00290"
     CDS             complement(<1..598)
                     /locus_tag="VHF44_00290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase"
                     /protein_id="HEX2124020.1"
                     /translation="MGIPEKIKAIEDEIHKTQINKATEFHIGLLKAKMARLRREMNEN
                     THGKTVSIGGENAGFDVRKAGDATVVLIGLPSVGKSTLLNTLTNAKSRVASYQFTTLT
                     AVPGIMEYRGARIQILDLPGIIEGAAAGRGIGKRVLSVARNADLVLIILDVFQPHHLG
                     VLKNELAEMGIKIDQKPPNVIVEKTSTGGVSVNILVPTK"
     gene            936..1115
                     /locus_tag="VHF44_00295"
     CDS             936..1115
                     /locus_tag="VHF44_00295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124021.1"
                     /translation="MNQGKVGAPFEYSHSYIHFLAFIKIGFKIAYRTVQGIVRGLSEY
                     IRIEEIHLHISGEGL"
     gene            1608..1739
                     /locus_tag="VHF44_00300"
     CDS             1608..1739
                     /locus_tag="VHF44_00300"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124022.1"
                     /translation="MIAEIVFSSLKRVLGEDILSKKIKAQKVEAGLKVMLYNKFISL"
BASE COUNT          607 a          288 c          316 g          549 t
ORIGIN      
        1 attttgttgg aaccaaaata tttactgata ctccaccagt agatgtcttt tcaactatta
       61 cgtttggagg tttttggtca atcttaattc ccatttcggc taattcgttc tttaaaactc
      121 ctaaatgatg tggttgaaaa acatctagaa ttatcaaaac aagatctgca tttctagcaa
      181 cggagagtac tcttttgcct atacctcttc ctgctgctgc accttctatg atacctggaa
      241 ggtctaagat ttgaatccta gctccacgat attccataat gcctggtact gccgtcagag
      301 ttgtaaactg atatgatgca actcttgatt tagcatttgt caatgtattt agaagagttg
      361 atttgcccac acttggtagt ccgatgagaa caacggttgc gtcgcctgcc ttcctgacat
      421 cgaaaccagc attctctcca ccaatagaaa ccgtcttgcc atgggtattt tcattcattt
      481 cacgtctcag acgagccatt tttgctttta gtagaccaat atgaaattca gtagctttat
      541 tgatctgagt tttatgaatc tcgtcttcga tggctttaat tttttctgga atacccattt
      601 atgtaaaata tagaatggtt gaaatattta ccttttcata gagtgttttt ttagaatgat
      661 aatccgaaaa aataatcaaa acacatagga gtttttcaat tcatctttta tcccatttct
      721 aacaaccgta ataaaacgac aactttgcta tcactatgct tttataagct ttcatttact
      781 atctactttg tagcattatt accttggata tattagaatc agttcatgcc actaaacaaa
      841 tcctggcatg attacaatga atcattgatt gaacgtggat gtgtgtactt atgtatattg
      901 gctttttgaa gtcatgaaat aaggagatta agaaaatgaa tcaaggaaaa gttggagctc
      961 cctttgaata ttcacacagt tacatccatt ttctagcgtt tattaagatt ggatttaaga
     1021 ttgcttatag aactgtccaa ggaattgtaa gaggactatc tgaatacatc aggattgaag
     1081 aaatacattt acacatatca ggagaaggat tataaagatt aaaccatcat ctgtcggaaa
     1141 tctaggtttt gaagaagaac atgacaagcc aataatgctg ataatcgatg catcgggttt
     1201 aaccatatca aaaagaaagg tgattatatt gaggaggaga aatggatacg tgggaaaaaa
     1261 gagtttatca agctgcatat agctgtagac ggagaatcta taaaaaggta gtatcattca
     1321 gagaatagca aaaggtaatg ctcatgattc caaaaaagtt ttgtcaacta ataaaggaat
     1381 cagctaaaag acatgatatc gataaagtat atgatggaga taaagcatat atgacaatag
     1441 aaagaacttc aatatactgg acgacataaa tgctgaacca gctgttagta ttagcaaaat
     1501 gcatctacca gatccaaggg atgttcatta agaagaaacg gagtcttctt gcttatcaag
     1561 aaactaggat atgatagatg gaaacagcta aaggatacag gtagaagatg atcgcagaaa
     1621 ttgtcttttc ctcattaaaa agagttttag gtgaagacat actttcaaag aaaattaaag
     1681 cacagaaagt agaagcagga ctgaaagtaa tgttatacaa caaattcatc agcttgtaaa
     1741 ccaattataa caatatctag
//
LOCUS       DATABJ010000017         1663 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_12769, whole genome shotgun sequence.
ACCESSION   DATABJ010000017 DATABJ010000000
VERSION     DATABJ010000017.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1663)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1663)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_12769"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..646
                     /locus_tag="VHF44_00305"
     CDS             <1..646
                     /locus_tag="VHF44_00305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124023.1"
                     /translation="VRILDNLQPAIIIRNIQQEDIPEIVALQKKSFPDVAAGMITAPS
                     FLENHIHIFPEGQFCAEINERIVASACSLIISLKPEYAEHTWYDIVGDRKLTSHNPKG
                     DSLYADDISTLSDFRCLGIATMLYNMRKDLAMKLNLRRIIGGGRLLEFHKYADKMSAL
                     EYSQKVIKGELKDPVLSFQLKNGFRFIKILPNYIQDSCSLNYASFIEWLNPKYR"
     gene            663..1451
                     /locus_tag="VHF44_00310"
     CDS             663..1451
                     /locus_tag="VHF44_00310"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2124024.1"
                     /translation="MDCHVHLNYYEYTNKLSLEERLKALLDVMAANNIDYSIILSSYK
                     VNVDRPSTAEILDITKKHDNLGVVAGLSIDNHTDEDYRNCRIWLKEGLLKGVKLYCGY
                     EHYYPFDKRYQRVYDMCMEFKVPVMIHTGDTFSSKGKIRFSHPLNIDDVAVDNPDLKI
                     VMCHLGNPYILDCQEILYKNKNVYADISGLVFGNFTVHSKKYMVNKVTELLNYAGEPH
                     YLLYGTDWPISNMSSYLNFVEKLKLSSQIRDLVMFRNAKNLFRI"
BASE COUNT          591 a          243 c          275 g          554 t
ORIGIN      
        1 tgtcagaata ttggataatc tacagccagc aattatcatt agaaatattc aacaggaaga
       61 tatacctgaa atagtcgctt tacaaaagaa atcatttcct gatgtggctg ctggaatgat
      121 aacggccccg tcctttctcg aaaatcatat tcacatattt cctgaaggtc agttttgtgc
      181 agaaataaat gaaagaatag ttgcatccgc atgcagttta ataatctcac taaaacccga
      241 atatgcagag catacatggt atgacattgt tggagatcga aaactcacaa gtcataatcc
      301 taaaggcgat agtctttatg cagatgatat ctcgactctc tcagattttc gatgtcttgg
      361 gatagcaaca atgctttata atatgaggaa ggatttagcc atgaaattga atttaaggag
      421 aataataggt ggaggtagac tgctggaatt tcataaatat gcagataaaa tgtcagcttt
      481 agaatattca caaaaggtaa taaaaggaga actaaaagac cctgtccttt catttcagtt
      541 aaaaaacgga tttagattta ttaaaatact acctaattat attcaagatt cttgctcact
      601 gaattatgcc agtttcattg aatggttaaa tcctaaatat cggtagtgat attcttatca
      661 ttatagattg tcatgtacat cttaactatt acgagtatac aaataaactt tcactagaag
      721 aaagattaaa agcattacta gatgtcatgg ccgcaaacaa tattgattat tctattattc
      781 tatcatctta taaggttaat gtggatagac cctcaacagc tgaaattctt gatattacaa
      841 aaaaacatga taatcttgga gttgtggccg ggctttcaat tgataatcat accgatgaag
      901 attatcgaaa ttgtagaata tggttaaaag agggtttact taaaggtgtc aagctttact
      961 gtggctatga acattactac ccatttgata aaagatatca aagagtatat gatatgtgta
     1021 tggaatttaa agttccagtt atgattcata ctggcgatac attttcaagt aaaggtaaga
     1081 ttagattttc acatccattg aatatagatg atgttgctgt cgacaatcct gatttaaaga
     1141 tagtaatgtg tcatttagga aacccctata tccttgattg tcaggaaatc ctgtataaga
     1201 acaagaatgt ctatgcggat atttcaggat tggtttttgg caattttaca gtacattcca
     1261 aaaaatatat ggttaacaaa gtgacagagc tattgaatta tgccggtgaa ccacattatc
     1321 ttttatatgg aacagattgg ccaatttcta atatgagttc ttatcttaat tttgttgaaa
     1381 aacttaagct cagttcccaa ataagagatc ttgtaatgtt tagaaatgca aagaatcttt
     1441 ttagaattta aatttattat ctatgtgttt cttttttaag atgaatttta tcaaaagtga
     1501 tattattgag tctttcatta ttattattag ccaagatatc gcattccaac acagcttact
     1561 aattatgcca gtttcattga atggttaaat cctaataata ttgcgcttat aatactaaaa
     1621 taaatattaa tgcataatta tatctaaata caaaacacaa aac
//
LOCUS       DATABJ010000018         1516 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1538385, whole genome shotgun sequence.
ACCESSION   DATABJ010000018 DATABJ010000000
VERSION     DATABJ010000018.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1538385"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1200)
                     /locus_tag="VHF44_00315"
     CDS             complement(<1..1200)
                     /locus_tag="VHF44_00315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX2124025.1"
                     /translation="MTHPKVVLTADRTLMSPYRGISLASFFGCAPALDANRSHDSIWY
                     HLLGNQVTPRILFDFICNPIENINGHATYAPYGLRKVEASLIRDGYSREDVVVAHPDY
                     IEQFIGPETQVVGTYEMDPLGMGPVTMTFTYGRKQMSYDEFYNRELHHKINAAKTKNG
                     SKAKVIAGASGTWQYNYDPAKIEEYGLYGIVEGDLGGIGPEIDGAGRRFFDALINGEM
                     EIANPFKKKEFKIEIKEFSRNDRNYHGRFIHYRDEPSIDEIPNIVNPSMHGMIEVMRG
                     CGRGCKFCDVTLRPLRYYPVEKVQKEIEINMKYGGLKNAWVHSDDIFVYGLNPRTTKN
                     MQPNREAIEELFKGIMATGIEHTNPTHGTLAGAIADERLIPNVSKIIRAGADNHIGIQ
                     CGFETGSI"
BASE COUNT          453 a          320 c          239 g          504 t
ORIGIN      
        1 tatgctacct gtttcgaatc cacattgaat accgatgtga ttatctgccc ccgctctaat
       61 tatcttcgaa acattgggaa tcaatctttc atcggcgatt gctcccgcaa gagtgccatg
      121 ggttgggtta gtatgttcaa ttccagtagc catgataccc ttaaatagtt cttcaatagc
      181 ttccctattt ggttgcatat tcttcgtagt tcttgggttt aatccataga caaaaatatc
      241 atcgctatga acccaagcgt tcttcaaacc accatacttc atatttattt caatttcttt
      301 ttgaactttc tctactggat aatatctcaa cggtcttaga gtgacatcac agaatttgca
      361 tccgcggccg catcctcgca ttacttcaat catgccatgc atacttggat taacgatatt
      421 tggaatctca tcaattgagg gttcgtctct ataatgtatg aatctgccat ggtaattcct
      481 atcatttcta gaaaattcct taatctcaat tttgaattct ttctttttaa atgggttagc
      541 aatttccatt tctccattga ttaacgcatc gaaaaacctt cttcccgctc catcaatctc
      601 tggtccgata ccaccaagat ctccttcaac aattccataa aggccatatt cctcaatctt
      661 agctggatcg taattgtatt gccaagtgcc tgatgcacca gcaatcactt tggccttact
      721 gccattctta gttttggcag catttatctt atgatgtaat tctctattgt aaaattcgtc
      781 gtatgacatc tgcttacgcc catatgtgaa tgtcatagtc acaggaccca ttccaagagg
      841 atccatctca tatgttccta ctacttgggt ttctggtcct atgaattgtt cgatataatc
      901 tgggtgagca actacaacgt cctctctgct ataaccatct cgtataagtg aagcctctac
      961 tttcctgagc ccataaggcg cataggtggc atgtccattt atattctcaa ttggattgca
     1021 tataaagtca aagagaattc tcggagtaac ttggttacca agtaaatgat accaaatgga
     1081 atcatgactt ctattagcat caagagcagg tgcacaaccg aaaaatgaag ctagagagat
     1141 tcccctataa ggagacatta aagtccggtc cgctgttaaa acaacctttg gatgggtcat
     1201 aaatctaagt ccctaatcag tatgcagata aaggtggata gattttaagc tttgcaattt
     1261 tctaaccact atctcatatt atcttaagac acattatttt aaatacattg aaaataatag
     1321 gagtttaaaa tagaatggat tttaacatgg gttctgctac tcaaacaaaa aaactattat
     1381 ttttctatat gctgaatatg aaacgtattc tccgccttat aatttttgaa agctaaatcc
     1441 aaatgaagat atctaatagc aaatggtata caaaaaaaga ttataacatt ttcacatcat
     1501 ataaactcat gttgtt
//
LOCUS       DATABJ010000019         2018 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_14181, whole genome shotgun sequence.
ACCESSION   DATABJ010000019 DATABJ010000000
VERSION     DATABJ010000019.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2018)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2018)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2018
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_14181"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(104..508)
                     /locus_tag="VHF44_00320"
     CDS             complement(104..508)
                     /locus_tag="VHF44_00320"
                     /inference="COORDINATES: protein motif:HMM:NF012753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEX2124026.1"
                     /translation="MNEGSSSLPYEVVKKEGQEQETTGGKKYTAMKRVEAFIAAEKTD
                     KVVSALEALNLQATFYESKGMGKGEKYRLSYGRGAGTTKMSYSERHTVVTIVEENRVG
                     AVVAAIRREAAKTDKTSAGIIVISAVEDILSI"
     gene            complement(681..817)
                     /locus_tag="VHF44_00325"
     tRNA            complement(join(681..703,735..749,779..817))
                     /locus_tag="VHF44_00325"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(780..782),aa:Gly,seq:tcc)
     gene            complement(880..1446)
                     /locus_tag="VHF44_00330"
     CDS             complement(880..1446)
                     /locus_tag="VHF44_00330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124027.1"
                     /translation="MSEFRFTDGNLIILYGINRGKSADGELPDHIKERVKVCLGTFNI
                     IMKSKPDKQKTLVIVVAEEKSGKLIKEELVKGGVEEKIIAIDSSSENVAQTFDRIIDM
                     IKTRSNPPYIYFIGSVWLRDIYDSTVVSKLKGYKVRFEGALDHRPVEEVEKEKALDVP
                     RKSIEHYKKRSKDKAIDMLLNYIFPDKK"
BASE COUNT          598 a          397 c          315 g          708 t
ORIGIN      
        1 attttgtcag ataggatgtg cccagcaact gtccagataa tcatgttttg aagagaataa
       61 agaaattagg aggtgagaaa aggactctag acttacacat tttttaaata ctcaatatgt
      121 cttcaacagc tgaaatgact attattccag cacttgtttt atcagtcttt gcagcttctc
      181 ttcttatggc agctactaca gctccaactc tattctcttc tactattgtc acaactgtat
      241 gtctttctga atacgacatt ttagtagttc ctgctcctct gccataactt agtcgatatt
      301 tctcaccttt acccatacct tttgactcat agaatgttgc ctgtaagttt aaagcttcta
      361 gcgcagatac taccttgtct gttttttcag ctgcaataaa tgcctcaact cttttcattg
      421 cagtgtattt cttaccaccg gttgtttctt gttcttgtcc ttcttttttt actacctcat
      481 aaggcaatga tgatgaccct tcgttcataa gcattaatat tctaccataa cttttattta
      541 atgatctttt tgttcaatac aactaaacca gttactaatg tcattatcct cctatgaact
      601 aatatttttt tgtcctgctt gttatttaca ggcaaatgga ttgaaaataa tagcatatcc
      661 agtatatgaa ttcctataaa tggtgcggtc accgggattt gaactcccgc tctatcattt
      721 gttaaagata gagtcccggg ttacgggctt gcttcgcatt tgcatatata taaatgcatg
      781 gaaggccagt gtcctaacca aactagacga tgaccgcaca ctagatagcc gaacatgaaa
      841 tggatattaa atcttaacga ttaatgcgga taagaacagt tatttcttat ctggaaatat
      901 atagttaagg agcatgtcaa ttgctttatc ctttgatctc ttcttgtagt gttctatgct
      961 ttttcttgga acatctaatg ctttttcttt ttcaacttcc tccacaggcc tgtgatctaa
     1021 tgcgccttca aatcggactt tatatccctt taatttagaa actactgtag aatcataaat
     1081 atctctaagc caaacagaac ctatgaaata aatgtatggc ggattactcc tagttttaat
     1141 catatctata atacggtcga aagtctgtgc gacattttct gaagaagagt ctattgcaat
     1201 tatcttttct tcaactcctc cctttactag ctcctctttt ataagtttgc cagatttctc
     1261 ttctgcaaca actatgacca atgttttttg tttatcgggt tttgatttca tgataatgtt
     1321 aaatgtgcct aggcatacct tcactcgttc ttttatatga tcgggtaatt ctccatcagc
     1381 agattttcct ctatttatac catagagaat gatcagattt ccatctgtaa agcgaaactc
     1441 ggacataatt gtatctaatg gaagtcatca aggttcacat ttatacactc ttctaataaa
     1501 aactgcatag acatttaaat taatttgtga ggatattctc ttgcgttaga aagtcaaaga
     1561 aggattagac cagagattag accagaattt taaaaaatat tattgaaata gacttgtaat
     1621 aggtttaagt cggtactggt gatgtatctc ctacacatat tgaccatgat gaataggcag
     1681 cagttcagta tcagaattta tttggatttc cagcaataac aggaatggtt tgatatgctc
     1741 atatgtttca ttcactagtt ccacggcaga ttgctggctt gatataatac agcctatcag
     1801 aatgagaacc atattgtctt cgagacaaag acatgagaga tgaaaaacta caaagcacaa
     1861 acatccttct tttcatgcac atttccacta tcaactacat acacattatc tgaagaatca
     1921 atagcaatgt catgtggaag ccaaaattga ccatcaccat atccttcaga accccatttt
     1981 gttataaagt taccatcgct gtcgaatttt tggatatt
//
LOCUS       DATABJ010000020         4699 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_450783, whole genome shotgun sequence.
ACCESSION   DATABJ010000020 DATABJ010000000
VERSION     DATABJ010000020.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4699)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4699)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4699
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_450783"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            177..776
                     /locus_tag="VHF44_00335"
     CDS             177..776
                     /locus_tag="VHF44_00335"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124028.1"
                     /translation="MLTNVGHLSSFHMFETYKNKHLSTHALRQRFILKSLALYKQQPL
                     YMTRGNLSTLLAQEFNISKKNAYQYVFKELQKCLIPNQFVEVAGNVLITKGPRILQRK
                     GIPSYRLTKMGILVTSALEELEIKKRKELLEDYLISAKILNIYEFSVNEQLLFQLRKY
                     PEFALESIRQGVLKYIEDRTNHPFDIIQNSQGNLYFNDK"
     gene            931..1593
                     /locus_tag="VHF44_00340"
     CDS             931..1593
                     /locus_tag="VHF44_00340"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF013366.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit D"
                     /protein_id="HEX2124029.1"
                     /translation="MTSSPSVDILERADEKIVIKFTNVPRQYVNAIRRTSISEVPTLA
                     IDDVVILENSSVMHDEAIAHRLGLIPLQTKLDRFVMPHDCDCKSTLGCSKCRVLLVLD
                     SEANEKTKVVTSGELVSEDELIKPVSKDIPIITLAPSQKLKFEAYARLGIGRDHAKWQ
                     PTSAAIVKDGNNENESILVIETNRALTAEETLMAAIEKINSKIKNFNHIIQHLEVPKN
                     SS"
     gene            1644..1994
                     /locus_tag="VHF44_00345"
     CDS             1644..1994
                     /locus_tag="VHF44_00345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18e"
                     /protein_id="HEX2124030.1"
                     /translation="MLANTVIDNTIWTLRRAFKKNKAPIWKALENELSGRRSNKREVN
                     VGRLSDITKNDEVVIIPGKVLSSGAIDHKLTVCTFSISQEAAKKILESGGKIITLDRL
                     IEKYPDGNGVRIIG"
     gene            1987..2478
                     /locus_tag="VHF44_00350"
     CDS             1987..2478
                     /locus_tag="VHF44_00350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEX2124031.1"
                     /translation="MANKQELLKRSSSQSTQNKQIVIDAANCISGRICSHVSKLLLQG
                     NRVTIVNAEKAMLSGQRYKTIQLYKEHLEINSVTNPIHGPFHPRRPDTILTKMVRGMI
                     PKRKSSGIEAFKRLRVYIGIPESLKNSEMKYYDDSKITKPSSYYITVGEVAKEIGWSG
                     GVE"
     gene            2483..2926
                     /gene="rpsI"
                     /locus_tag="VHF44_00355"
     CDS             2483..2926
                     /gene="rpsI"
                     /locus_tag="VHF44_00355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEX2124032.1"
                     /translation="MNKIDLYPGQRKTCRAVATISKGRGKVRINNVPVELLQPAVAKE
                     LVITPLLLIGELRNKVDINVNVEGGGFMGQAFASAVAISKALTGEGKGGRDPKDHPLA
                     KSVREEIRKKITEFDRHFLAGDPRQSESKKFGGPGARRRKQKSYR"
     gene            3243..3932
                     /locus_tag="VHF44_00360"
     CDS             3243..3932
                     /locus_tag="VHF44_00360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly factor SBDS"
                     /protein_id="HEX2124033.1"
                     /translation="MTDTRLTVVRLTVDGDKFEILVKPDPALEYKLGKRTDLSSVLIS
                     DEIYSDANKGSRAAGEKLTKHFKTADPTEVAKQIISRGELSLTTEQRRKIVEEKKRQI
                     IQYINKSFVDPKTHIPHPILRIESAMDEVRVIIDPFKRAEDQAKTVVDALRKILPLKS
                     EIMRLTVTVPPEFSGQSYSVFKTIGNFKGEQWLENGSLRVILEINAGMKAAFLDRIGS
                     ITKGSAQVVEE"
     gene            4044..>4699
                     /gene="rrp4"
                     /locus_tag="VHF44_00365"
     CDS             4044..>4699
                     /gene="rrp4"
                     /locus_tag="VHF44_00365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000178 - exosome (RNase complex)
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex RNA-binding protein Rrp4"
                     /protein_id="HEX2124034.1"
                     /translation="MGMQEIKRKFVVPGDKIADGNFRPLMNVIKVNNTIIATRIGIAE
                     AGRDGIKVIPLSGVYIPRVNDIVIGKITDHSSLSWEVDINSCFSGHLPAQDVFGRDFS
                     PARDDMGRQLAIGDLITARIIVFDRTRDPMLTIQDKDLGKIPRGEFLKISATRVPRLI
                     GKRGSMIQTIEQATQTRVLIGQNGIVVVTGRNPEGINLAVRAIRMVEEEAHTSNLTQR
                     V"
BASE COUNT         1712 a          719 c          905 g         1363 t
ORIGIN      
        1 attgataaat aataattatt tttatttcac ttattttgat atattatttt gatgtgtata
       61 cacaaagtaa taatcataat atttacgtat cattacaaaa ataaactgac tgttttttaa
      121 tttattataa taattttata agataaagta tatcaataga agggttcaat ttatctgtgt
      181 taacaaatgt tggccacctt tcatcatttc atatgtttga aacttacaaa aataagcatc
      241 tctctacgca cgcactaaga cagagattta tccttaaatc attagcatta tacaagcagc
      301 aaccattata catgactaga ggcaatcttt ccacacttct tgcacaggaa tttaatatct
      361 ctaagaaaaa tgcatatcaa tatgttttca aggagttaca aaaatgctta attccaaatc
      421 agtttgttga ggtggcagga aatgttttga ttacaaaagg accaagaatt ctccaaagga
      481 aaggcatacc atcttatcgt ctaactaaaa tgggaatttt ggtaacatca gctttagagg
      541 aacttgaaat taaaaaaaga aaggaacttc ttgaagatta tttaatttct gcaaaaattt
      601 taaatatata cgaattttct gtgaatgaac aacttctctt ccagcttcgt aaatatcctg
      661 aatttgctct ggaatctatc aggcagggtg ttttaaaata tatcgaagac agaactaacc
      721 atcccttcga tataattcaa aacagccaag gtaatctata ttttaatgat aaatgaagac
      781 taagagtgct aggagatatc aataaactgt tatggtttgt acaagattat tattacatag
      841 tgattagaaa aaatatataa aaaatgaaag tatatttgtg attcggtaga tttttaagga
      901 tgctataaga acaaattctt tgaattaata ttgacgtcct ctccatctgt tgatattctt
      961 gagagagcag atgaaaaaat tgtcataaaa tttactaatg ttccaaggca atacgtaaat
     1021 gccattagaa gaacttcgat aagcgaagtt cctaccttag ctatagacga tgttgtaatt
     1081 ttagagaatt catcggttat gcatgatgaa gcaattgctc atagactagg tcttatccca
     1141 ttacaaacaa aacttgatag atttgtaatg ccacatgatt gcgactgtaa aagtacgtta
     1201 ggctgctcaa aatgcagagt gttattagta ttagattcag aggcaaatga gaaaaccaaa
     1261 gtggtcactt ctggtgagct cgtgtctgag gatgagctta taaagccggt tagtaaagac
     1321 attccaatta tcactcttgc tccaagtcag aaactgaaat ttgaggctta tgcaagatta
     1381 ggaattggaa gggatcatgc aaaatggcag ccgacttcag cagcgattgt taaggatgga
     1441 aataatgaga atgaatctat ccttgttatt gaaactaaca gagcattaac agcagaagaa
     1501 acactgatgg cagctattga gaaaataaat tctaaaatca agaatttcaa ccatataata
     1561 caacatcttg aagtacctaa gaattcctcc taggtacatt tatttgggga ttcacgataa
     1621 ctgacggaga cgaagaataa attatgcttg ctaacactgt aatagataac acaatatgga
     1681 ctcttcgtag agctttcaaa aagaataaag ctccaatttg gaaggctcta gaaaatgagc
     1741 tttcaggtcg aagatcaaat aaaagagaag ttaatgtcgg tcgattatca gatattacta
     1801 aaaatgatga agtagtcatt attcctggca aggtgttaag ttctggcgca atagatcaca
     1861 aattaacggt ttgtacattt tcaatttcac aagaagctgc aaagaagata ttagaatctg
     1921 gaggaaagat tataacactt gatcgactga tagagaaata tcctgatggt aatggagtgc
     1981 gcataattgg ctaataagca agaattgcta aagagatcat cttcacaatc aacacagaat
     2041 aaacaaatag taattgacgc agcaaattgc atctcgggta gaatttgctc tcatgtttca
     2101 aaactattgc ttcagggaaa tagagtgaca attgtaaatg ctgaaaaagc tatgctatct
     2161 ggacagaggt acaaaacaat ccaactttac aaagaacacc ttgaaattaa ttcagttaca
     2221 aaccctattc atggtccttt tcatcctaga agacccgata caatactaac aaagatggta
     2281 agaggcatga taccaaaacg caagagtagt ggtatagaag cttttaaacg gttaagggtt
     2341 tacataggta ttcctgaatc cttaaagaat tccgaaatga aatattatga tgactcgaag
     2401 atcacaaaac catcatccta ttatattaca gttggcgaag ttgcaaaaga aattggatgg
     2461 tctggaggag tagagtaaat agatgaataa aatagatctt tatccaggac aaagaaaaac
     2521 atgtcgagcc gtggccacaa tttctaaagg aagaggcaag gtgagaatca ataacgttcc
     2581 tgtagaactt ttacaaccag cagtggctaa ggaattggta ataacacctc tcctcctgat
     2641 aggagaattg agaaacaagg ttgatataaa tgtcaacgta gaaggtggag gattcatggg
     2701 acaggccttt gcaagtgctg ttgctatttc taaggctcta acaggagaag ggaaaggagg
     2761 aagagatcca aaagatcatc cgttagcaaa aagtgtacgc gaagaaatta gaaagaaaat
     2821 cactgaattt gatagacatt ttcttgcggg cgatccaaga cagagcgagt ccaagaaatt
     2881 tggaggacct ggagctagac gtagaaagca gaaatcgtat cgttaattct gcttttccta
     2941 tctgtattta ttatctatat attataaaca atacaagttc gtctgattat ttctctctat
     3001 ttatatctag caacatatac tattgcataa taatactcac gaaatatata atattccgaa
     3061 attaataact tattatctgg atggctcaat cagttgatag aatagataat attcagatat
     3121 gatctatttt tgaatcgagt agttttcatg aaagcttgac tgattataaa ttagaaaagt
     3181 ccttagattt gagaactaat tgacatgcat atataaatgc aagacagttt aatttacaga
     3241 ctatgacaga taccaggtta accgttgttc gactaaccgt agatggtgat aaatttgaaa
     3301 ttttagtaaa gcctgatcca gctctagaat acaaactggg taaaagaact gacctttcta
     3361 gtgttcttat ttctgatgag atatactcag acgcaaataa aggttcaaga gcagccggtg
     3421 aaaagttaac aaaacatttc aagacagcag atcctacaga agttgctaaa caaatcattt
     3481 ctcgaggtga acttagtttg acaacagagc agcgtcgaaa aatagttgaa gagaagaaga
     3541 gacaaattat tcaatatatt aataaaagct ttgttgatcc caagacacat attccacatc
     3601 caattctgag aatcgaaagt gcaatggacg aagtaagagt tattattgat ccattcaaga
     3661 gagctgaaga tcaagctaaa actgtcgttg atgcgcttcg caagatatta cccctaaaat
     3721 cggaaattat gcgattaacg gtaacagttc cacctgaatt ttcaggtcaa tcatatagtg
     3781 tatttaaaac gattggaaat tttaaaggag agcagtggct tgagaatggt tcgttgagag
     3841 tcatcttaga aataaatgca ggaatgaagg ctgccttcct agatagaata ggatctataa
     3901 caaagggttc tgctcaggta gtagaagagt aaatattttt cgatagttaa aatataggta
     3961 tgttcttact gacccaaaag gtaaggaaat gatgcaaaga atcttttggt atattgaggc
     4021 ttttacattg ggggttattt aatatgggca tgcaagaaat taaaagaaag tttgttgttc
     4081 caggagataa gatcgctgat gggaatttca ggccgttaat gaatgtaatt aaagtgaaca
     4141 atactattat tgctactaga attggaattg cagaagcagg aagagatggc attaaagtta
     4201 taccactatc aggtgtgtac attcctcggg taaatgatat tgtaataggc aagattaccg
     4261 atcactcttc actttcttgg gaagtagaca tcaactcttg tttttctggt catctacctg
     4321 cacaggatgt ttttggaaga gacttttctc cagctaggga cgatatgggc agacagttgg
     4381 caataggaga tttaatcaca gcaagaatta ttgtattcga taggacaaga gatccaatgc
     4441 taactatcca ggacaaggat ctaggaaaga tccctcgtgg agaattttta aaaatttctg
     4501 caacacgtgt tccacgtctg attggaaagc gcggttctat gatacaaaca atagaacaag
     4561 caacacaaac aagagtttta attgggcaaa atgggattgt tgtcgttacg ggtagaaatc
     4621 ccgaaggaat aaacctagca gttagagcca ttagaatggt tgaagaagaa gctcacacat
     4681 caaacctaac acaaagggt
//
LOCUS       DATABJ010000021         1505 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_233252, whole genome shotgun sequence.
ACCESSION   DATABJ010000021 DATABJ010000000
VERSION     DATABJ010000021.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1505)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233252"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(102..1301)
                     /locus_tag="VHF44_00370"
     CDS             complement(102..1301)
                     /locus_tag="VHF44_00370"
                     /inference="COORDINATES: protein motif:HMM:NF040322.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124035.1"
                     /translation="MDSNIKVAFWNLGNLFDTSSTSVIGSDLEFTPERGWNDAAKDKK
                     IENLANVINSLHNNQGPDLLGLCEIENEELAKKLIEKMGKQDIYEVAQYTDSPDIRGI
                     DTCLIYSKKVFKFIDAKSHNIYFRYPTRDIFQVNLSVINNNNSELNVLVNHWPSRTGG
                     RFETEPLRIAVAENCARAVESVLKVSLDYLKAMPDNLKEDEESLAKLNQKWNKNVLVM
                     GDLNDNPFDRSILNYLRATPDKNRLTQWKEIFEHPNLKKWPTNKQTDKHNYLYQPSFL
                     YNCMWNLIPDGTIFFDGGLDLFDQFIISRGLLNGEQGLKMDLNEIKIDKSTKMSNHIL
                     AGNFEPIGQENKIHPIFKESPMSFEYIKKKANGEPEKFQVGRDPLTGFSDHFPIQSVI
                     NIHNDNF"
BASE COUNT          463 a          254 c          220 g          568 t
ORIGIN      
        1 tagaaaagtc tttattttat tttattactc taagatgcca tagaaaagag agtgagtaat
       61 tgctgagact cctcatataa tcaattctta gcagtatgat ttcaaaagtt atcattatgt
      121 atatttatta ctgattgaat agggaaatga tcactaaagc cagtcaatgg atctctacca
      181 acttgaaact tttctggctc tccgttagcc ttcttcttga tatattcaaa tgacattggg
      241 ctttctttga atattggatg aattttattt tcttggccaa taggttcaaa atttcctgca
      301 agaatgtggt ttgacatttt agttgacttg tcgattttta tctcattcaa atccattttt
      361 aatccttgtt ctccattgag taatcctctt gatattataa attggtcaaa tagatctaag
      421 cctccgtcaa agaatatagt accatctgga ataaggttcc acatacaatt atacaaaaat
      481 gaaggctgat aaagatagtt atgcttatca gtctgcttat tagttggcca ttttttcaaa
      541 ttaggatgtt caaatatttc tttccattga gtcaatcgat ttttatctgg agtagcccgt
      601 aaataattta agatacttct atcaaaagga ttatcattca aatcccccat aactagaaca
      661 ttcttattcc atttttgatt tagtttagct aatgactctt cgtcttcttt aagattatcc
      721 ggcattgctt tcaggtagtc taaggaaact tttaatacgc tctccactgc tcttgcacaa
      781 ttttcagcaa ctgctattct gagaggttct gtttcaaagc gacctccagt ccttgagggc
      841 caatgattta ctagcacatt taattcagaa ttgttattat ttatcactga tagatttact
      901 tgaaagatat cgcgcgttgg atatctaaaa tagatgttgt gactttttgc atcaataaat
      961 ttgaaaacct ttttggaata aataaggcag gtatctattc ctctaatgtc cggactatct
     1021 gtatattgag caacctcata aatatcctgt ttacccattt tttctatgag ttttttggct
     1081 aactcttcat tttcaatttc acacaatcct aacaaatcag gaccttgatt gttatgtaat
     1141 gaattaatga cattagctaa attctcaatt tttttatcct tagctgcatc attccaacct
     1201 ctttctggag taaattcaag gtctgagcca atcactgaag tagatgaagt atcaaataga
     1261 ttacccaaat tccagaaagc aactttaatg ttactatcca tattgccttt gctaatttat
     1321 gtaatataat atattcttaa agtggaagtt tactataagg tgtaattttt tttcttttca
     1381 taaactaact gaaaacttta cataaatata gaattaaaaa gactctcata gtattgtgtt
     1441 atttcaatat ttgttagggg atatggagtt gcagctttct aaatgtatcc aaagctcttg
     1501 acaat
//
LOCUS       DATABJ010000022         4225 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_233780, whole genome shotgun sequence.
ACCESSION   DATABJ010000022 DATABJ010000000
VERSION     DATABJ010000022.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4225)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4225)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4225
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_233780"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..374)
                     /locus_tag="VHF44_00375"
     CDS             complement(<1..374)
                     /locus_tag="VHF44_00375"
                     /inference="COORDINATES: protein motif:HMM:NF018178.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1080 domain-containing protein"
                     /protein_id="HEX2124036.1"
                     /translation="MIKEDNNNFTILFDGKSLDGWKMIGEGNFIVIESEKALLSQGGM
                     GLLWNTKKKYNDFMLKLEWRVMHKDDNSGVFVRFPDPGNDPHVAVNNGYEIQIDDLGK
                     PDGDRIHKTGAVYNFAAPSKIVS"
     gene            complement(830..1930)
                     /locus_tag="VHF44_00380"
     CDS             complement(830..1930)
                     /locus_tag="VHF44_00380"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2124037.1"
                     /translation="MPARNEQGNIEKCILSLLAQNYPNFEVIVIDDNSTDDTLKIMKE
                     IERTIVPANNRLKIISLIHKPDNWTGKTWASQQGYLQSSGSILLFTDADTYYSSKDTI
                     LLTISYMQKQNLDVLSGIPSIDLRDFWSKIIIPLWDLVSVLFGVNIADVNNPKSKVAY
                     LMGSFFLIHKTVLEEVGTFQSVSKAVQEDRALGVRIKEAGYSMKIVRIDDMVSALWSR
                     DLNTLWHGIGRTLAPIVIKNKFKVIKNLLIIIFMSTLPFMLLPYTLSVTIQQFTFTFM
                     PQFFTQFDFRLILFLNIVSCIMPIIGASIKAIKQHRQTPMYAMFVFFSAIFVVLACLY
                     NIAPLLMSNKTKSIIWRGRKYVYGREKERFVI"
     gene            complement(2493..3863)
                     /locus_tag="VHF44_00385"
     CDS             complement(2493..3863)
                     /locus_tag="VHF44_00385"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEX2124038.1"
                     /translation="MQKFDLIVIGSGSGLDVANAATQNGLKVAVIEKDRMGGTCLNRG
                     CIPSKLLIHSADVAEIIKSANLFGIEVDGLSVNFQKIVERVNGIIDHNSGQIKNAFKD
                     IENPKLFAKECKFVGEKTISIRDNEKITAEKILIASGTRPQIPKKIKGLEGSGYITSD
                     EALRLKKQPRVITFIGGGYITCELAHFFGSLGTEINIVQLGDALIPNEDEEISKKFTE
                     VFSKKYNVYLGYETESVSKRKKDSDNDADSTFKIIAKNSNNQKSLELDSDQLLLAVGR
                     IPNSDILDIEKAGVKVDEKGFIITDEYLETNVKGIFALGDAVGRYQFKHNANHESQYA
                     FNNILHPNRKVAVDYTAMPHAIFSSPQVAGVGFTEQKLKKKSIDYQRSVYPYINTGMG
                     EAIEDRDGFVKFLVDRKSRKILGCHIIGSHASILIHEVLVIMRVGDGTIDIFQELFIS
                     IQHFLK"
BASE COUNT         1388 a          738 c          594 g         1505 t
ORIGIN      
        1 gaaactattt tacttggagc ggcaaaatta taaactgctc ctgtcttgtg aattctatca
       61 ccatctggtt tacctaaatc atctatctgt atttcataac cattattaac tgcaacatgt
      121 ggatcattgc ctgggtcagg aaatcgtaca aacacacctg aattatcatc tttatgcatt
      181 actctccatt ctaactttag cataaaatca ttgtatttct ttttagtatt ccatagaaga
      241 cccattcctc cttgggaaag aagagctttt tcgctttcta ttactatgaa gtttccttca
      301 cctatcatct tccagccatc taaggatttg ccatcaaaga gaattgtaaa attattatta
      361 tcttctttta tcaaattgat ttctcacatc ttgtttggtt taaactatag tttgatatag
      421 ttgatgacct gccacaaagt atactataaa ctctatatta ttgctcatat cttggaagat
      481 cgcttttaga tattttatct ccaaaccaga ttctatgagt attatcatcg attttgtttt
      541 tttatactgt ggttgtgcag actctaaggt atttggatat aaaaaaaggt gttagaataa
      601 aattaatact atatgttttc ttcatgatca atcattattt agttttgata taatgatttt
      661 aatattatta aatatctatg gcggattaaa tcaagataca gataatagta ttgctaaacg
      721 ataactaaga ttacttgatg ctactgctac cttctttgac gttgttaatt acactcaaga
      781 tattcatgat taggcataaa aaagtaatta ttctaataat atagaaaatt catattacaa
      841 atctctcttt ttctcggcca taaacatatt ttctccctct ccatattatt gactttgtct
      901 tatttgacat caataatgga gcaatattat agagacaagc aagaactaca aaaattgcac
      961 taaagaagac aaacatagcg tacatgggcg tctgcctgtg ttgtttgata gccttgattg
     1021 atgctccaat aattggcata atacaagaca ctatgttcaa aaataatata agacgaaagt
     1081 caaattgcgt aaaaaattgt ggcataaacg taaaggtaaa ttgctggata gtaactgata
     1141 aagtgtaagg aagaagcata aatggcaaag tagacataaa aataataatt agtaaattct
     1201 taatgacttt aaatttattt ttgattacaa taggagcaag tgttcttcct ataccatgcc
     1261 atagagtatt aaggtcgcga gaccaaagag cagacaccat atcatctatc ctcacaatct
     1321 tcatactgta gcctgcttcc ttaatacgta ctccaagcgc tctgtcctcc tgtactgcct
     1381 tagaaacaga ttgaaatgtt cctacctctt caagtactgt tttatgtatc aaaaaaaaac
     1441 ttcccataag atatgctact tttgacttcg gattgtttac atcagctata tttacgccaa
     1501 agagaacaga tactaaatcc catagaggta ttataatctt tgaccaaaaa tcgcggagat
     1561 ctatagatgg tataccactt aacacatcta aattttgttt ctgcatatat gaaatggtaa
     1621 gtaaaattgt atctttgcta ctatagtagg tatcagcatc tgtgaataac aatatacttc
     1681 cactgctttg tagatatcct tgctgtgaag cccatgtctt gccagtccag ttgtcaggtt
     1741 tatgaatcaa agatataatc ttcaacctat tgtttgccgg tactatagtt ctttctatct
     1801 ctttcattat tttcaaagta tcatcagttg aattatcatc tattacaatt acttcaaaat
     1861 ttggataatt ctgagcaagc aaagataaga tacatttttc aatattacct tgttcgtttc
     1921 tagctggcac aacgacactt acaaacggat aaaggaaagg atcattggta aacatctttt
     1981 ttttagagaa ataataagaa ttataattat gattactata tgacgatatt atacttttct
     2041 ttaatatctg tgacggcgaa agaaacagca ttctttcttg tttatggtgg agtataggaa
     2101 taagaagata agacctgaga gaaatgataa agacatacat acatgaagca attatcaata
     2161 taaataaaat gaataacaaa gactcactag tactactgct gttccaaata gcatagaaat
     2221 cgattgccat accttactgc ttactagtta gtataattaa aagatataac aatccaaatc
     2281 ttgtatctta tcatcttctc cttcttttct ctttgtgaaa aattaataga accttaaaat
     2341 tggaaatttg ttattttatc gacatttaag aataccatcc tgaattaaat atttgtaact
     2401 agtttattta gaagcaatct tttcatgatt ttaatatttt ccacgtcggt tatacttata
     2461 atactactaa attttgtctg ccgccctagc aatcacttca gaaagtgctg gatggatatg
     2521 aatagttctt gaaatatgtc gatagtacca tctcctactc tcataattac caaaacttcg
     2581 tggataagga tagatgcatg gcttccaata atatgacagc caagaatttt tctacttttt
     2641 ctatctacaa gaaactttac aaaaccatct ctatcttcaa tcgcttctcc cattcctgta
     2701 ttaatatatg gataaactga tctctgatag tctatgctct tcttcttgag tttctgctct
     2761 gtaaaaccta ctccagcaac ctgaggtgag ctaaagatag catgaggcat tgcagtataa
     2821 tcgactgcaa cttttctatt aggatgcaat atattgttga aagcatattg agattcatga
     2881 ttagcattat gcttaaattg atatcgtcct actgcatcgc caagtgcaaa tattccttta
     2941 acattagttt caagatattc atctgttatt atgaaacctt tttcatcaac ttttactcct
     3001 gctttttcaa tatcaaggat gtctgaattt ggaattcggc ctacagcaag aagaagttga
     3061 tcagaatcga gttccagtga tttttgatta ttagagtttt ttgctataat cttaaatgta
     3121 gaatcagcat cattatcgct atccttcttc ctctttgaaa cagactctgt ttcatatcct
     3181 aaatacacat tgtacttttt agaaaatact tctgtgaatt tttttgaaat ttcttcatct
     3241 tcatttggaa tgagtgcatc tccaagctga actatgttaa tttctgttcc aagagagcca
     3301 aaaaagtgag ctaattcaca tgttatatat cctccaccta taaatgtaat aacacgtggt
     3361 tgttttttta gacgtaatgc ttcatcacta gtaatgtaac cgcttccttc tagacctttt
     3421 atcttttttg gaatttgagg tctcgttcca gaagcaatca atattttctc tgcagttatt
     3481 ttttcattat ctctaatcga gattgttttt tctccaacga acttgcattc ttttgcaaag
     3541 agtttagggt tttctatatc tttaaaggca ttcttaattt gacctgaatt atgatctatt
     3601 ataccattaa ctctctcaac tattttttga aaattaactg acaacccatc aacttcaatt
     3661 ccaaaaagat ttgcgctctt gattatttca gccacgtctg cactatgtat aagtaattta
     3721 gatggaatgc aacctctatt aagacaagtt ccacccattc tatccttctc gataactgct
     3781 accttaagac cattctgtgt tgcagcatta gcaacatcaa gtccagaacc gctaccaatg
     3841 acgataagat caaacttctg caattcgtct attataaatc aagtcatcat tatattataa
     3901 agataacatc cattatacta gcacatatta aagaatggtg ttaggattca attattaaac
     3961 tcaaatgaac tttagccaat aattagtgat aaaaattata tgttttctat aagagcaaat
     4021 tgtagttgga agacgatagt agatgagttc tttataatca ggttgttaca ttttatgact
     4081 atatgtataa tttactaaaa tcaatgttag atagaataag cctagcattt tggataagca
     4141 attcattcta aaagaatatc taaaagatag atatacatcc ttcttattat catactattg
     4201 gtggattcaa ctctaccaat acaat
//
LOCUS       DATABJ010000023         2659 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1540400, whole genome shotgun sequence.
ACCESSION   DATABJ010000023 DATABJ010000000
VERSION     DATABJ010000023.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2659
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1540400"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(216..1040)
                     /locus_tag="VHF44_00390"
     CDS             complement(216..1040)
                     /locus_tag="VHF44_00390"
                     /EC_number="2.4.2.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfide-dependent adenosine diphosphate thiazole
                     synthase"
                     /protein_id="HEX2124039.1"
                     /translation="MTKIFADVNEKEITRAIAGMFHETITEFTDSDVIIIGSGPSGLS
                     AGMELGKMGVKTIIIEQNNYVGGGYWVGGYMMNPVTVRAPAQKVWDELGVPYRKVSEG
                     LYATWGPHACSKLIAATCDAGVRFLQLTKFDDLVLKKNRVCGVVVNWMPVSALPRNIT
                     CVDPVALESKIVIDASGHDSVAVRRLMDRGYVKWKGMEPMWVDGGEDAVVNNTDEIFP
                     GLIATGMSVTETHGLPRMGPTFGSMLLSGKRAAEVALRKLKQVHRPPKLKINSIQT"
     gene            complement(1370..2497)
                     /locus_tag="VHF44_00395"
     CDS             complement(1370..2497)
                     /locus_tag="VHF44_00395"
                     /inference="COORDINATES: protein motif:HMM:NF024299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEX2124040.1"
                     /translation="MGRFLGRKSTRFSPTPSENNTQQTDYNEDLEFRKRDLYKKGINH
                     MANEKLEDAIRSFELALRIDQKYVDAWIKKGYAHFHMNEYNAAISSYDKALEIDLNNA
                     EAWNLKGLSYYRMRNYDKAIAACEKAIDINPNDGMAWYNEACYLTVSGRVDEGLEALK
                     RSIEIDISNAKKAVRDRDFENARAEEGFRRIIEVVVLESIRQGYDYVGKIVWITAMDK
                     EDVEDAITRLSMKGLIIKKEKRTLTSREEYYELANEIAYKVGTAKRSGLLGKSKEISA
                     PVQQLKDIIEIIGRAKDSVEKGDVNSTIQDFDSLINPMKHGSAMIEQFFDEHRDLRLF
                     QIRLKDKGQDYLNSHRSDLIKLLNDIDSKIRNNQVTKPIKD"
BASE COUNT          776 a          561 c          401 g          921 t
ORIGIN      
        1 gatgcgtagc tttgaagttc ttctgccaac caattaactc ataaggactt ggacgtattg
       61 cagaaaaggg attctcatat ctattgtaca gtttgaaaaa atatcattac atcttgaacg
      121 aatatttcag attcaaattt ccgactctaa aatcacaata aagaagaata tatcgaaaat
      181 tcaattttat ttattcaaag aaatagaaag agatttcagg tttgaatgct atttatcttt
      241 aatttaggag gtcgatgtac ctgttttagt ttacgcagtg ctacttctgc agccctcttt
      301 ccagaaagca gcatcgaacc aaatgttggt cccattcgtg gtaagccatg tgtctctgtg
      361 actgacatac ccgttgcaat caaccctgga aagatctcat ctgtattatt gaccacagcg
      421 tcttcccctc catctaccca cataggctcc attcccttcc acttcacgta accacgatcc
      481 attaagcgtc ttacagcaac agagtcgtga cctgatgcat ctatgacaat tttactttca
      541 agtgcaacag ggtctacaca agtaatattt ctaggaaggg ctgagacagg catccaatta
      601 acaacaacac cacatacacg attctttttt aatactaagt catcgaattt cgttaactgc
      661 aagaatctaa cgcccgcatc acaggtagcg gcaattaatt ttgagcatgc gtgcggtccc
      721 catgtagcgt aaagtccttc actcaccttc ctatatggga caccgagttc atcccaaacc
      781 ttttgtgctg gagctctaac tgttacagga ttcatcatat atcctccaac ccaataaccg
      841 ccgcctacat agttattctg ttcaataatg attgtcttta cgcccatttt tcctaattcc
      901 atgcctgccg ataatccact aggtcctgag ccaatgatta ttacatcaga atctgtaaat
      961 tctgtaatgg tctcatgaaa catcccggcg atagcgcgag taatttcttt ctcgttcaca
     1021 tcagcaaaga tctttgtcat atgattcttc ttttactact aggtattaat acattctctg
     1081 ctaaaaaata cttcaagata aatatactaa ttgaaaaatt tttgctctac cctatacact
     1141 tcacttcgtc aattgatgct atcattgttt aatacagaat aagatctgtt tagaattatt
     1201 ctacttattt gatcgcaaat aacttattat ctttcatttt attaagaata tatataagga
     1261 ttaggaaaga gtgagaaaca ctaaattatt agaacatata tctttttcat cgcgaactat
     1321 ttgagcaaca tcttatattg ataacaagat cttaatgagt gttcaatctt caatctttta
     1381 tgggcttcgt tacctgattg tttcggattt tagaatcaat gtcattaagt aattttatca
     1441 agtcagatct atgggagtta agataatctt gccccttgtc ttttaatctt atctgaaata
     1501 gtctaagatc tctatgctcg tcaaagaatt gttctatcat ggcactccca tgtttcatag
     1561 gattgataag agaatcaaaa tcctggatgg ttgaattgac atcgcccttt tctacagagt
     1621 ctttggctct gccaatgatt tcaatgatgt ctttcaattg ctgcactgga gcagaaattt
     1681 ctttgctttt tccaagaaga cctgaacgtt ttgctgtacc gactttatag gctatttcat
     1741 tagcaagttc gtaatattcc tccctgcttg tcagtgtcct tttttctttt ttaatgatta
     1801 atcctttcat agataatcga gttatggcat cttcgacatc ttccttatcc attgcggtaa
     1861 tccatacaat ctttcctaca taatcatagc cttgtctgat agattctaat acgactacct
     1921 caataattcg ccggaatccc tcctcagctc tagcattttc aaagtctcta tcacggaccg
     1981 ctttcttggc attggaaata tctatttcta tggaacgctt caaggcttcc aacccttcat
     2041 cgaccctacc actcacagta agatagcatg cttcattata ccaggccatc ccatcattag
     2101 ggttaatatc aattgctttt tcacatgccg ctattgcctt atcataattt ctcattctat
     2161 aatatgataa acctttcaaa ttccaagctt ctgcattatt aaggtcgatc tctagtgcct
     2221 tatcatatga agaaatagca gcattatatt cattcatatg aaaatgagca tagccttttt
     2281 tgatccatgc atcgacatat ttttgatcta ttcttaatgc aagttcaaaa ctgcgaatgg
     2341 catcttctaa tttttcattt gccatatgat ttatcccttt cttgtataaa tcacgttttc
     2401 gaaactcaag atcttcgtta taatcagttt gttgagtatt attttcggaa ggagtagggg
     2461 aaaatctcgt gcttttcctt cctagaaatc ggcccattga ataaattgct caaatcgcag
     2521 ataaatacat ttggactagt ataataatta ctatatacca atccattatg tttattatgt
     2581 tacgcattgt caaatcatgg agacaaaaat agctccatcg gtgtgtaaat gtcttttttt
     2641 tgctctcttg attaagatt
//
LOCUS       DATABJ010000024         2467 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_887795, whole genome shotgun sequence.
ACCESSION   DATABJ010000024 DATABJ010000000
VERSION     DATABJ010000024.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2467)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2467)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2467
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_887795"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(283..1644)
                     /locus_tag="VHF44_00400"
     CDS             complement(283..1644)
                     /locus_tag="VHF44_00400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124041.1"
                     /translation="MTWFAVQVHRKIFLMARLNICKLSHHFGFFKKKNNLRKIRPSTD
                     NNPVTNATSITVLDALAELAKIESENVRILSNNLSPIKEDVTRTLRSIQKVAEELKKD
                     KIKLDEHKFKSIVENSKATVVTSLEREASSDLPSPHSVYDAKRFKERLESIMNRFSEV
                     SGSHSKVLNVFMKKYAGKLKDEFEQLSSLLEDTKSFITDFEQEARVIGECNNILNTIS
                     QKTSSLKSDKKEVENTRSAVEKLEYDLIELDNTLKNFEDSVEFRDSVHTMSEIDKIKE
                     EEEEFNKQLLDLFGHLSRAITKYSYGMSKETYRRLHVLSEMPWKIFEDVEGLSPYIKL
                     LSEIRRSVQLYDITLKDSDKVIQYCDHILKSLPKFEEIAKERKLRLESLNKKKANSLV
                     ATSREIREKINNYNEAIQNNNRVLEQLAKQINEKNHELEELTKKAEERLMIISGRRFS
                     IST"
BASE COUNT          780 a          414 c          367 g          906 t
ORIGIN      
        1 agaatcacaa tgtagttaac gataattaga ttggagaaaa tacatgctat ataacaaaga
       61 gcacttaaag catttggcaa taatataacc gtgcggaact aatgcaattt ttacattatc
      121 atgattcaag aatcagaaaa tacggaagga gaattatgat actgctagag cataaacatt
      181 gggctactct gtatttctta tttttgatat gataaaaagg ctgaaaggaa ataacaccta
      241 aaaatgcctt tataaatcga acatcgaatg aagcaaatgt tgtcacgttg atatgctgaa
      301 ccttcttcca ctgattatca taagtcgctc ctcagctttt tttgtcaatt cttctaactc
      361 atggttcttt tcatttattt gtttagctaa ttgttccaat actctattat tattttgaat
      421 tgcctcgtta taattattaa ttttttccct tatttcccga gaagttgcga caagtgagtt
      481 tgcctttttc ttatttaatg actccaatct taactttctt tccttggcta tttcttcaaa
      541 ctttggtagg gactttagga tatgatcaca atattgtatg actttatcag aatccttaag
      601 tgtaatgtca tacaattgga ctgatctgcg aatttcggaa agcagtttta tatatggaga
      661 gagaccctct acatcttcaa aaatcttcca tggcatttca gacaaaacat gaagcctcct
      721 atacgtctcc ttgctcattc cataagaata tttggtaatt gctcgggata aatgaccaaa
      781 aagatccagt aattgtttat taaattcttc ttcttcttct tttattttat ctatttcact
      841 catagtatgg acagaatctc taaattcaac tgaatcctca aaattcttca atgtgttatc
      901 caactctata agatcatatt ctaatttttc aacggcactc ctggtatttt caacttcttt
      961 tttgtctgat ttcaaagaac ttgtcttttg agaaattgta ttaagtatat tattacattc
     1021 tccgattact cttgcttctt gttcgaaatc tgtaataaaa gattttgtgt cttctagcaa
     1081 tgaggaaagc tgctcaaatt cgtcttttag ctttccagca tatttcttca taaaaacatt
     1141 taaaacctta ctgtgagatc cactgacttc actaaaacga ttcataattg actctaatct
     1201 ttctttgaac ctttttgcat catacacaga atgtggtgac ggtagatctg aagatgcttc
     1261 tctttctaga gatgtcacta ccgtcgcttt tgaattttca acaattgatt taaacttgtg
     1321 ctcatctagt ttaattttat cttttttgag ttcctctgct actttttgta ttgaccttag
     1381 cgttcttgta acatcttcct tgataggaga gagattattc gataaaattc ggacgttttc
     1441 tgactcaatc tttgctaatt ccgctaatgc atccaaaaca gttatgctag tagcatttgt
     1501 cactggatta ttatcagtag acggtcttat cttacggaga ttatttttct tcttgaaaaa
     1561 tccaaagtga tgagacaatt tacatatatt taatctagcc atcaaaaata ttttacgatg
     1621 aacctgtacg gcgaaccacg tcattttcat aatatgcatc aatttaataa aattgataat
     1681 atgtcccagc tctgtctgct ttctataata tctgttaaaa attggttaaa taatactcta
     1741 catctaatta tattgctaat tttctaaaat gttgcaactg tttacaaagg cttgatcttg
     1801 tgataagagg taaaagagaa ttctcaccaa ttaagctgct tcaccgtaat atgattgctt
     1861 tgttatgcct tttctatcta aatattttcg aagatttaaa agaaattcat ctctaactga
     1921 attagatgta atctaatata catagaaatt agacatatct gttgatttca atagcccata
     1981 gaacgcttca acgataatat ttgtatgata tagggttaat tatcggatac gctaactcat
     2041 ccaatagtaa cgatagagtt ctatctagat aatatgattg tcaaggaaca tatcaaaaaa
     2101 gattttggaa ggttatagaa ggatgatact actgaagagc aaaaacacgt tcgtaaagtt
     2161 aaaggtgtca gtattaacaa taggaaggaa tattaaaatt gtaatatact agaaaatatt
     2221 ctctccatga tttgactctg gtcaacttat tcaagaaaag tgattgttat gtcgaaagca
     2281 atgtgcacaa gtgagaacta tgtatccaca ttctttattc tccttcatct tgaatgaaat
     2341 tatgacattt attgtatatc gagtcacatt tgcctggata aagagtgatt acaataagct
     2401 ttctcaaact gtcctagatt agacttattt tatttgattt gagagcttca tgatgtcgtg
     2461 atcagtt
//
LOCUS       DATABJ010000025         2104 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_452658, whole genome shotgun sequence.
ACCESSION   DATABJ010000025 DATABJ010000000
VERSION     DATABJ010000025.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2104)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2104)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2104
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_452658"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(54..911)
                     /locus_tag="VHF44_00405"
     CDS             complement(54..911)
                     /locus_tag="VHF44_00405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043190 - ATP-binding cassette (ABC)
                     transporter complex [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEX2124042.1"
                     /translation="MTIILEILQFLEFSFVQRALIAGVAVAIICSIIGLFLVLRRHSL
                     FGDALSHMAFGGIAIGMYTNVYPIWTAFIVSILAALAITKLRQSTNIPPDSAVAVLLS
                     SGLALGVVLVSLSDGFSIDLFSFLFGSILLVSVEDTLMILVIAVTILSIVLILYRKLL
                     YITFDEEQAKVSGLQVTKLNYLFIVLAGITVIASMRLVGILLISSLIVIPTITAIMFG
                     KGFRKTALVSVSISVLSVVTGIIISYMLNLAPGGTIVLVSVVIFIATLATKYSIKKVR
                     RFEKSTIRI"
     gene            complement(1093..>2104)
                     /locus_tag="VHF44_00410"
     CDS             complement(1093..>2104)
                     /locus_tag="VHF44_00410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEX2124043.1"
                     /translation="LSNIIKLLIEIVIVVTVTAILSSVFAINTTIIHATNNTASEINN
                     TIASINGNKASKVKVVASFYPIYDFVQKIGGDRVEVSSIIPPGVEPHDWEPTIQQRLK
                     AESSDMIVYNGAGFEKWIEEIDAKFRVDTSEGLELLEGSSEGGDHQTSASGHTDLNEN
                     ADPHIWLDPILAKYQIEKIRDGLIKIDPANTNYYNGTAKKFIAELDSLDAFIRSELSN
                     CDKIDFIAFHNAFTYFSNRYGLNQHSVYEGVSPEGDILPQRLQEIIKLSRELNIDTIY
                     AEDLIDPRLVNVIATEIPNGKVLILSPIEGIDEEEQKAGKGYIDKMRQNIENLKVGLR
                     CT"
BASE COUNT          692 a          394 c          318 g          700 t
ORIGIN      
        1 ctatgttatt gtatagtaat aattacatgc aaaggttggg ataatgataa gatctaaatt
       61 ctaatagtag atttttcaaa tcttctaact ttcttaatag agtattttgt tgctaatgtt
      121 gcaataaata tgactacaga aacaagaaca atagttccac caggagccaa gttcagcata
      181 taagagataa ttatgcctgt tactacagat aataccgata ttgaaacaga aactaaggct
      241 gtttttctaa aaccttttcc aaacattatc gcagtgatcg taggaattac aattaatgaa
      301 gagattagta aaattcctac caaccgcatt gatgcaatca cagttatgcc tgcaagcact
      361 atgaaaagat agttcagctt tgtaacttgc aatccactga cttttgcttg ttcctcatcg
      421 aaagtaatgt ataataattt tctgtaaaga atcaatacta ttgacaagat tgttactgct
      481 atgactaaaa tcatcaaggt atcttcaacg cttactaaca ggatacttcc aaatagaaag
      541 ctgaacaaat ctattgagaa gccatctgat aagcttacta aaacaacgcc aagagcaaga
      601 ccagatgata gcaatacagc aacagctgaa tccggaggaa tatttgttga ctgtcttagt
      661 ttagtaatag ctaatgctgc aaggatcgaa acaatgaagg cagtccatat aggatagaca
      721 tttgtataca tacctatagc aatccctcca aatgccatat gtgagagtgc atctccaaaa
      781 agagaatggc gtcttaacac caaaaataat ccaattattg agcaaattat cgcaacggca
      841 actccagcta tcaacgcacg ttgcacaaaa ctaaattcaa gaaattgaag aatttcaaga
      901 attatggtca tagtatatag tcatgacaga tttcatataa gcttacgatt gagttgtgta
      961 ctattcccag cagcatagtt agaaccaatt acttctggct gatcattctc ttctttcata
     1021 ttgaatataa tagagttgcc taaattagga accactaata tatatatcga taatatattc
     1081 catcaatact tactatgtac atctaagacc cacctttaga ttctcaatat tctgtcgcat
     1141 cttgtcaata tatcctttgc ctgctttttg ttcctcttcg tcaataccct ctattggact
     1201 tagaatcagt actttgccat taggaatttc tgttgcgata acattaacga gacgaggatc
     1261 gatcaaatcc tctgcataaa tggtatctat attcaattca cgagataatt ttataatttc
     1321 ttgtaacctc tgtggtagaa tatctccctc tggtgaaact ccttcataca cactatgttg
     1381 gtttagtcca tatctatttg aaaagtaagt aaatgcatta tgaaatgcga taaaatcaat
     1441 tttatcacag ttgctgagtt ctgatcttat gaatgcatcc aatgaatcaa gttctgcaat
     1501 aaacttttta gcagttccat tataatagtt tgtattagct ggatcaattt ttatcaatcc
     1561 atcacgaatt ttctcaattt gatattttgc tagaatcgga tccaaccata tatgagggtc
     1621 agcattttca ttgagatcag tatgcccgct agcagaggtt tgatgatccc ctccttcact
     1681 acttccttca agcaattcta atccttcact cgtatctact ctaaatttcg catcaatttc
     1741 ttcaatccac ttttcaaatc ctgcgccatt gtatactatc atgtcagaag attctgcctt
     1801 aagtctttgt tgaatagtgg gttcccagtc atgtggttct actcccggtg gaattataga
     1861 tgatacttca actctatctc cacctatttt ctgaacaaaa tcatatattg gatagaatga
     1921 tgcaacaact tttactttag acgctttatt tccatttata cttgcaatag tattatttat
     1981 ttcagaagct gtattatttg tagcatgaat aatagttgta ttaattgcaa atacgcttga
     2041 taggatggca gttactgtaa ctacgattac aatttctatc agcagtttaa taatattact
     2101 caat
//
LOCUS       DATABJ010000026         2212 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_17907, whole genome shotgun sequence.
ACCESSION   DATABJ010000026 DATABJ010000000
VERSION     DATABJ010000026.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2212)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2212)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2212
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_17907"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            345..>2212
                     /locus_tag="VHF44_00415"
     CDS             345..>2212
                     /locus_tag="VHF44_00415"
                     /inference="COORDINATES: protein motif:HMM:NF025182.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4185 domain-containing protein"
                     /protein_id="HEX2124044.1"
                     /translation="MIDETFDLQNTFAVNFNPSCIGNPGPAKLFGTRKVIQLTGDIDR
                     ETGHMTINQTGKKFGIYGTDLGVSFLHDGKLYFLFGDTTRRGPDGGIPQSAMPAAPYN
                     EDETDYDSIAYTTSDRAYDGINLIFNSDFPRVDDISQLTAEHPIEGVSIGNDMYVFFT
                     TDLMEEGRILPRRTVLARSTDGGYNFGNSLYTFSKDKFIHVSIQIINNENIQGLPDPI
                     GKGLLIWGSGVYRKSDVYLAYMPLDEITNRSSLRFFAGFAPCSSRPIWESNESMAKPL
                     FSAGCIGELSIRWNYYLEKWIMLYNCGLCNTKGVIVRLADKPWGPWSTPKIVFDPADG
                     HGRFIHQPGRDRLYDRDRDRDLPSDVGYEYGPYQMTPYATGVKGRYTKIYFTLSTWNP
                     YQVIQMSAIITSEEEDKNPKPYANNMNDRNDRKYAYVSVLLAHLAKIKNISLGNSIQN
                     STYIADHNEWAQFHSHLELRSELKTKFLQLITNLASDRDKADAYTAMTAAIVRLGYDY
                     SSFNNSVNDIVYVKWALNAVHSGHKQWLIDDINEKIDNEHFLQNNDYLCYAYSSDDSN
                     EFKYARVSLLEAKLADNVGMKWDLPFQGLLDCNSHITWARFRSVEEMREDLAYKFN"
BASE COUNT          723 a          353 c          411 g          725 t
ORIGIN      
        1 attttgctgc gtgttataag ggttaatatt tgcttccttc gcctgctgtg ttgtctgaga
       61 tattatcctc tctcataata ctggtttctg ctttgtaata tcatctatat gatgacgcct
      121 ctgctcatat ttggatgata aagctaatgg gatggcacat atattcattt aaccttctct
      181 actattaaaa gtccaagttt gtattacaat cttcaataat atcagttcat tgagtgatta
      241 tatttttact tgcctaaaac aataaggtag aatatatttc ataataattt gaaactgtta
      301 atacatatgt agaatcatta tcgtcgatag tgaaataata aaaagtgatt gatgaaacat
      361 tcgatctgca aaatactttt gcggtaaatt ttaatccatc atgcattgga aaccctggac
      421 cagcaaaatt atttggtacg cgtaaagtaa tacaattaac tggtgatatt gaccgtgaga
      481 ctggccatat gacaataaat cagacaggaa agaaatttgg aatatatgga acagacttgg
      541 gtgtatcttt tcttcatgat ggcaagcttt attttttatt tggcgatact actagaagag
      601 gaccagatgg tgggattcct caatcagcta tgcctgcagc tccttataat gaagatgaga
      661 ccgactacga tagtatagct tatacaacta gcgatcgtgc atatgatgga atcaatctta
      721 tatttaattc tgattttccc cgtgtagatg atatttctca acttactgca gaacatccga
      781 tagaaggtgt tagtataggc aacgatatgt atgttttttt tactactgac ttgatggaag
      841 aaggaaggat attacctagg cgaacagtct tggcaagatc tactgatggt ggatataatt
      901 ttggtaactc actatatact ttctcaaaag ataaattcat tcatgtttca attcaaataa
      961 taaataatga gaatattcag ggattaccag atccaatagg caaagggtta ttgatctggg
     1021 gaagcggtgt atatcgcaaa agtgatgttt atttagcata tatgccatta gatgaaatta
     1081 caaacagatc atcacttcgt ttcttcgcag gctttgcccc ctgttcatct agacctatct
     1141 gggaatccaa tgaatctatg gctaaacctt tattttcagc tggatgtatc ggtgaactct
     1201 caattagatg gaattattac cttgaaaaat ggatcatgct ttataattgc ggtttatgta
     1261 atacaaaagg tgttattgtt cgtttagcag ataagccatg gggtccctgg tctactccaa
     1321 agatagtttt tgatcctgct gatggtcatg gacgttttat acatcaacca ggacgtgata
     1381 gactttacga tcgagatcga gatcgagatc ttccttctga tgttggttac gaatatggtc
     1441 catatcaaat gactccttac gctacaggag ttaaaggacg ttatacaaaa atatacttta
     1501 cactatctac ttggaatccc tatcaagtaa tacaaatgtc tgcaattatt actagcgaag
     1561 aagaagacaa gaaccctaag ccctatgcta ataatatgaa tgacagaaat gatagaaaat
     1621 acgcctatgt gtctgtctta ttggcacact tagcaaaaat aaaaaatata agtttaggaa
     1681 attccataca aaatagcacc tatatagcag atcataatga atgggcacaa tttcattccc
     1741 atctagaatt gcgctctgaa ctcaagacta aatttttgca attaattacc aatttagcat
     1801 ctgacagaga taaagctgat gcgtatacag ctatgactgc agctattgtc agattaggat
     1861 atgattatag tagttttaat aatagtgtca atgacattgt ttatgtaaaa tgggcattaa
     1921 atgctgtaca ttctggtcat aagcaatggc tcattgatga tataaatgaa aaaatagata
     1981 atgagcattt tctacagaat aacgattatt tatgttatgc atatagctca gatgattcaa
     2041 atgaattcaa gtatgcccgt gtgagtcttc ttgaagctaa acttgcagat aatgttggaa
     2101 tgaaatggga tcttcctttt caggggttat tggattgtaa ttcgcatatt acatgggcta
     2161 gatttagatc agtagaagaa atgcgtgaag atcttgcata caaatttaac ca
//
LOCUS       DATABJ010000027         5448 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1979107, whole genome shotgun sequence.
ACCESSION   DATABJ010000027 DATABJ010000000
VERSION     DATABJ010000027.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5448)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5448)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5448
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1979107"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..389
                     /locus_tag="VHF44_00420"
     CDS             <1..389
                     /locus_tag="VHF44_00420"
                     /inference="COORDINATES: protein motif:HMM:NF044671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEX2124045.1"
                     /translation="NSFYISGDDTTKLNVGDEIRLMELYNIKIVEIKSKDHKKLLIAN
                     HVGDELKHGISKIQWVAKNNIVPFKVKIARELYIDEEYNINSLKISDGFAETFVSSLE
                     YGTIIQFVRFGFCKLEENNTAIFTHR"
     gene            400..1269
                     /locus_tag="VHF44_00425"
     CDS             400..1269
                     /locus_tag="VHF44_00425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEX2124046.1"
                     /translation="MKIARIKNEKIGETYAIVSEDEKRLITKSEIQEQTGIPIPPRIK
                     EFMFEGWLNEVKEHQGKLEYIHRIEDVGLLAPLPNPSKIICLAFNYYDHAKDAGLTPS
                     DEPVIFMKPRTTLNPPFSDIICPSFVKRLDYEAEIAAIIGKDIKKVSVEHALDSIFGY
                     MILHDVSARDIQFKDKQFTRGKSIDTFAPCGPWITTKDEIEDPQNLKIITKVNGEIRQ
                     NSSSINMVIPIKKIISSLSTLMTIEAGDIISTGTPAGVAMSMKEPKYLKDDDIVEISI
                     ERLGMIRNRIVFR"
     gene            complement(1404..1721)
                     /locus_tag="VHF44_00430"
     CDS             complement(1404..1721)
                     /locus_tag="VHF44_00430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124047.1"
                     /translation="MLYQIMTRWFDTKDFSRNSNEIDQLTQTINEQSAEQRQIVDSFN
                     KAMNNFAEQRSLETCLEALNTSMQLANIRGKLVECYMYYARLLEKEVIRLSKIKDLKD
                     SQK"
     gene            1798..2640
                     /locus_tag="VHF44_00435"
     CDS             1798..2640
                     /locus_tag="VHF44_00435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX2124048.1"
                     /translation="MVVDNKGAITYVRVLKEDLAIIRVTPSDGPVPDFKAGQFVTLGT
                     YLPAEGKIIRRAYSIASPPEQKKHFELLIRWVRKPVPGRLTTDLFNKKEGDEIFWVKP
                     VGIFTINEKMHDGSPDNRRMVLIGGGTGLAPFIAYTLHLKSIGSKREIIVLHGASYVD
                     ELSYRELLTDLEEESLDKGKDKWNFRYRASISRPQEWFNRTWSGQKGRVESFLRPKAG
                     TDRSPLEELVGEKITPENTSFYVCGWQGTVDGALDYLVPKGFVTERNKRKDGSYDVKF
                     ESYG"
     gene            2699..3034
                     /locus_tag="VHF44_00440"
     CDS             2699..3034
                     /locus_tag="VHF44_00440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124049.1"
                     /translation="MKFEFEEFSTIEDVFLYLVSVAPYMKQVLPVSSYKGYVFSIVPL
                     TPLSGDVLMMIYTKGKIEPGMIEFDISTKKYKIVTAVERADKNYFIILTPRNATIADS
                     AIQYLESKE"
     gene            complement(3059..4633)
                     /locus_tag="VHF44_00445"
     CDS             complement(3059..4633)
                     /locus_tag="VHF44_00445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX2124050.1"
                     /translation="MAAGRRIVLTADRSLMTNYRGNFLYGFIACGPYELVPEFVFDKL
                     FCPSVETDKSTGEVKVAQCGLRRIEGALLKEYKREDIFLAHPEMLDKCIGSNTKVVGI
                     NVMDPLGMAPVTTTMSPEKLSYVAMKFKKMCASIIQLKKKYDFKVVVGGNGSWELAKP
                     DRMKIHGVDTVVIGEADELALDLFHDLEADDAPELLHTFVRNIDNIPLIRGPTINSLI
                     EAMRGCGRGCDFCDVNKRSKKDIPLDRLQTEAKINLKYGFDSIWLQSDEMLLYGCDNK
                     NFIPNSDAILDVWKGLKSVGANFVGTTHMTLSAVASSPDLIKNLSAVNNMDASGRWLA
                     TNLGVETVAPRMVKKHLGVKTKPYQPEEWGAVVREGCKILNQNHWFPALTLIIGWPDE
                     TPDETQYTIDLIQDFREMNMRGLVAPLLYQDFSEKNSMHFGNLNEAQFTLFWKCWQHN
                     LWVINDIIPIIIRNKTYGPAMKVFMAGLIKAGTWAIMRYLRGLSKDLFDGQIPEDIVE
                     RYTRQRSVTAPVPPRL"
     gene            complement(4730..5152)
                     /locus_tag="VHF44_00450"
     CDS             complement(4730..5152)
                     /locus_tag="VHF44_00450"
                     /inference="COORDINATES: protein motif:HMM:NF012514.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEX2124051.1"
                     /translation="MALEQSIGAVIRYCTSVENAESEFLLLKNRRGFWGFPQGHKEKG
                     ETEIQTLIREVFEETGIAYLYIQSYIGRIHYSYFRADGMKSEKEVRFYFATTTTRNVI
                     ISKEHDDYKWVKFSDALCILDHRQLKSILVRGHRKGLY"
     gene            5244..5317
                     /locus_tag="VHF44_00455"
     tRNA            5244..5317
                     /locus_tag="VHF44_00455"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:5278..5280,aa:Ala,seq:ggc)
BASE COUNT         1735 a         1017 c          978 g         1718 t
ORIGIN      
        1 caaattcctt ttatatctcc ggtgatgaca caaccaaact taatgtcggc gatgaaatta
       61 gactaatgga attatataat attaagatag tggagatcaa atcaaaagat cataaaaaac
      121 tattgattgc caatcatgta ggagatgaat taaaacatgg catttctaaa attcaatggg
      181 ttgcaaagaa taatatagtt cctttcaagg ttaagattgc tagagagctg tacatagatg
      241 aagaatataa cataaatagt ctcaagatct ctgatggatt tgccgagaca tttgtgtcat
      301 cattagaata cggaactata attcaattcg taagatttgg tttctgcaaa ctggaggaaa
      361 ataatacagc catattcact cataggtaga taaaaaataa tgaagatcgc acgaataaag
      421 aatgagaaga ttggtgagac atatgccatt gtttctgagg acgaaaagag attaatcaca
      481 aaatcggaga tccaagaaca aacaggcatt cctattcctc ctcgcatcaa ggaatttatg
      541 tttgaaggtt ggttaaacga agtaaaagaa catcaaggaa aattggaata tattcacaga
      601 attgaagatg ttggactctt agctcctctg cctaatccat ccaagataat ttgtctcgct
      661 tttaactatt atgatcacgc caaagacgca ggattaacac cttctgatga acctgtaata
      721 tttatgaaac caagaactac attgaatcct ccctttagcg acattatttg cccttccttc
      781 gttaagcgtt tagattacga agcagaaatt gctgcaataa taggaaaaga cattaaaaag
      841 gtatccgtag aacatgcgct tgattctatt tttggatata tgattttaca cgatgtatct
      901 gccagagata tccagttcaa agacaaacaa tttacccgag gaaagagtat tgatactttt
      961 gcaccctgtg gtccttggat aacaactaaa gacgaaatag aggatccaca gaacctaaag
     1021 atcattacca aggttaatgg agaaatacga cagaattcat ctagtataaa catggtgata
     1081 cctataaaga agataatttc aagtttgagc acccttatga caatagaagc tggagacata
     1141 atatcaacgg gaactccagc aggcgtagca atgtctatga aggaaccaaa gtatctaaaa
     1201 gatgatgaca ttgttgaaat ttctatagag agactcggta tgattagaaa tcgcattgta
     1261 tttcgataat gaggatacta gagacgcaga gaatagaacg ttaatgaaga tcaatcttct
     1321 tgagtgtgcg aataatgtat taatgctaac tttgaagata actgataaaa atgaatatat
     1381 atctccttca tgcctattca atattatttt tgactatctt tcagatcctt tattttactt
     1441 aatctaatca cttccttttc taataatctt gcataataca tataacattc aactagttta
     1501 cctcgaatat ttgcgagttg catagaagta tttagagctt ctagacatgt ttccaatgac
     1561 ctttgttctg cgaaattgtt cattgcctta ttaaaactgt ctactatttg cctctgttct
     1621 gcactttgct cgtttatcgt ttgtgtaagt tgatctattt cattagaatt acgagaaaaa
     1681 tcttttgtat cgaaccatct tgtcattatt tgataaagca tttactttcc aaataagaat
     1741 tacctatcca catgacaaca atatatttat ttagcataaa ttgaatttga ggattgtatg
     1801 gtagttgaca ataaaggagc gataacttat gtccgtgtac tcaaggaaga ccttgctatc
     1861 attcgtgtaa caccttctga tggtcctgtt ccagatttca aagccggcca atttgttact
     1921 ttgggaactt atctaccagc cgaaggcaag ataatacgtc gggcatattc tattgcttct
     1981 ccgccggaac aaaaaaaaca ttttgaattg cttattagat gggtaagaaa acctgttcca
     2041 ggtcgactca ccactgactt gttcaataaa aaagaaggcg acgaaatctt ttgggtcaaa
     2101 cctgttggaa tatttactat taatgaaaaa atgcacgatg gatcacctga taacagaaga
     2161 atggttctaa taggaggcgg tacaggtttg gcgcctttta tagcatatac actacatcta
     2221 aaatcaattg gaagtaagcg tgagataatt gtcttgcacg gagctagtta cgttgatgag
     2281 ctgagttatc gggaattatt aacagatttg gaagaggaga gcttagataa agggaaggat
     2341 aaatggaact tccggtatag agcaagcatc agcaggcccc aagaatggtt caatagaaca
     2401 tggagtggtc agaaaggaag agtagaatcc ttcttaagac ctaaggctgg cacagaccga
     2461 tcacccttgg aagaactagt cggtgaaaag ataacaccag aaaatacttc attttatgta
     2521 tgcggatggc aggggactgt agatggcgca cttgattact tggttccaaa gggttttgtt
     2581 actgaacgaa ataagagaaa agatggaagc tatgacgtaa aattcgaatc atatggataa
     2641 tcacgttcat ttttcatttt ttaaagcctt atatcatgga aacatcgaca actaatgtat
     2701 gaaatttgaa tttgaagaat tctcaacaat agaagatgtt tttctttacc tagtgtcagt
     2761 tgcaccgtat atgaaacagg ttctacctgt aagctcctat aagggctatg tgttttccat
     2821 tgtccctttg acacctcttt caggagacgt actcatgatg atttatacaa aaggtaagat
     2881 agagccagga atgatagaat ttgacatttc gactaaaaaa tataaaatag tcacagcagt
     2941 tgaacgagca gataaaaatt actttatcat tttaacacct agaaatgcga ctattgcaga
     3001 cagtgcaatc cagtatttgg aatctaaaga ataaatataa ttgggaataa ttatattttt
     3061 agagacgcgg cggtactggc gctgtcactg atctctgtct ggtgtatctt tcaacaatat
     3121 cctcaggaat ctgtccatca aagagatcct ttgataatcc tcgaagatat ctcattatgg
     3181 cccaagttcc agccttaatt aagccggcca tgaatacttt cattgcagga ccatatgtct
     3241 tatttctgat aattatagga attatgtcgt tgattaccca taagttgtgt tgccaacatt
     3301 tccagaataa agtgaattgt gcttcattta agtttccaaa gtgcattgaa ttcttttcag
     3361 aaaagtcttg ataaagtagt ggcgcaacta gacctctcat attcatttct ctgaaatcct
     3421 gaatcagatc tatcgtatac tgtgtctcat cgggcgtttc atctggccat cctataataa
     3481 gagtcagtgc gggaaaccaa tgattttggt ttagaatttt acaaccctct cttactactg
     3541 caccccactc ttctggttga taaggcttgg tctttacgcc tagatgtttt ttgaccattc
     3601 tcggtgctac tgtctctact cctaaatttg tggcgagcca tcttccactt gcatccatat
     3661 tgttgactgc ggaaagattc ttgataagat ctggtgaaga tgccacagcc gataacgtca
     3721 tatgagttgt gccaacaaaa tttgcaccta cagattttaa tcctttccac acatccaata
     3781 ttgcatcaga atttggaatg aaattcttgt tgtcacatcc ataaaggagc atctcatctg
     3841 actgaagcca aatagaatca aagccatatt tcagattaat cttagcctcg gtctgtagcc
     3901 tatctaatgg tatatctttc tttgagcgtt tgttgacatc acaaaagtca caaccccttc
     3961 cacatccacg cattgcttct atcaatgaat ttatagtcgg ccctcttatc agaggaatat
     4021 tgtcaatatt tctaacgaat gtgtgaagta attctggtgc atcatctgcc tctagatcat
     4081 gaaaaaggtc cagtgcaagt tcatcagcct cgccaatcac aactgtatca actccatgga
     4141 tcttcattct atcaggttta gccaattccc atgaaccatt tccaccgaca acgactttga
     4201 agtcatactt cttttttaat tgaataatcg aagcacacat cttcttaaat ttcatagcaa
     4261 cataagatag tttttctgga gacattgtcg tagtaacggg tgccatacct agtggatcca
     4321 ttacattaat accaacaact tttgtatttg atcctataca tttatcaagc atctccggat
     4381 gagcaaggaa aatatcttca cgcttgtatt ctttcaaaag agctccttca attcttctta
     4441 gtccacattg ggcaacctta acctctccgg tacttttgtc ggtctcgacg cttggacaaa
     4501 ataatttatc gaagacaaat tcaggcacta gttcataagg tccgcatgca atgaaaccat
     4561 aaaggaagtt tcccctataa ttggtcatca gactgcggtc cgctgttaaa actatacgtc
     4621 taccagccgc catttctatt ctgtatcctc tgcatttcgt ctacggatta gatataaatc
     4681 tattaccata acgtttctac tatggtctgt aggttaagca gttaattaat cagtagagac
     4741 cttttctgtg acctctaacc aatatggact tgagctgtcg gtgatcaaga atgcacagag
     4801 catctgaaaa ttttacccat ttatagtcat cgtgttcttt tgagatgatt acattcctag
     4861 tagtcgtggt tgcaaaataa aatctgacct ccttttctga cttcatccca tcagctctga
     4921 aataagaata atggattcta ccgatatatg attgaatata caaatatgct attcctgttt
     4981 cttcgaatac ttctcttatt agggtctgta tttctgtctc ccctttttct ttatgtccct
     5041 gtggaaaacc ccagaaacct cttctatttt tcaggagaag aaattcagat tctgcatttt
     5101 ccacggaagt gcaatatctt ataactgctc ctatagactg ctcaagtgcc acgctatacc
     5161 aatactgaga aattaggata attataatat tgttacttta tcttaaacgt attaatatcc
     5221 taataaaact gttgattaat gcagggccgg tcgtctagtc tggtaggata cggcattggc
     5281 attgctgagg tcgtgggttc gaatcccacc cggtccaaac cttttgtata tttgatcatg
     5341 actaattata tactaaaaat ctccttaatt ttgaaggcta cttgtctttt atgtataatt
     5401 tggtaaattc taaatacaga cttggtgttt gaatcataac ctattgtt
//
LOCUS       DATABJ010000028         2922 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1979236, whole genome shotgun sequence.
ACCESSION   DATABJ010000028 DATABJ010000000
VERSION     DATABJ010000028.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2922)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2922)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2922
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1979236"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..440
                     /locus_tag="VHF44_00460"
     CDS             <1..440
                     /locus_tag="VHF44_00460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="HEAT repeat domain-containing protein"
                     /protein_id="HEX2124052.1"
                     /translation="QYDNQNEQYFKDLSSHEDSVIRTRVICILADISGLDAVESISRV
                     LESDKNALVRHEAAFSLGQLGYPAATAALSNAVKSDPSYFVRHEAAVALGVIGSEDAR
                     ETLNEALKDESEEVRESAIIALANLDYVSTIKRNNKFTRMTGG"
     gene            complement(562..2658)
                     /locus_tag="VHF44_00465"
     CDS             complement(562..2658)
                     /locus_tag="VHF44_00465"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0006302 - double-strand break repair
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2124053.1"
                     /translation="MIKDIELHNFISHRDTSLLLEKGITIFVGHNGSGKSSIIDAITF
                     ALFGEHTRKSNKNLILRGASSSYVRLIFYVNSREYSAYRQLGSLGQSISAKLDLLSDS
                     NNIVNKPIVAGERKQFGESMSAEVAKTLGLDYKKLKVATIIQQGELNRIIEFHPKDFK
                     ELLNGMIGIDRLDLAYQTMHETIDGFRERLRTHNNGFDDKQIESIRNTIQLNMSELFD
                     AENILKQLESERNRIKANLDSLEKEIERIEPLILKARELKTMENSLIEYLNEKKDCLS
                     EDIIKLDRIVKEAQNSIHIVSEREEIRINLQMVRSEVEDAEIRIINNEGEFGRLKGLL
                     EFARKIEIKDGKCPVCNSTVQTVNKILDTGHIKNEMKKKTEERSKLLTERINSKKEES
                     FLEEKEKRIAAAEKFLASNNICNLQDIIKLEKELFQKKNDLSKLPKTIVGVDEDATIF
                     MIDHFSKSLVENIIKLKYQVKDLRIQDYLDAKLNHTRLSDALLEINMKIGSSQKSIQQ
                     ATKVIDDSNKILTELDYAAKYITILEKIRATVFNRDGLVGLSLRSWALKTISFKASEY
                     ATMFNIGISRIDLAEKVKDVDIICYGRHGEIDINSLSGGEKVAVALALRFAISYMMGS
                     SKLDFIILDEPTAHLDTERRKSMVKIISEAFKDGDGPLSQIIIITHDAEIFEDSEVDR
                     IYRFTMSVDGSLVSTE"
     gene            complement(2660..>2922)
                     /locus_tag="VHF44_00470"
     CDS             complement(2660..>2922)
                     /locus_tag="VHF44_00470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124054.1"
                     /translation="NYSCLHYIWQPLEEYTTTPLTYDEKPFDIDNELQKLAAEALKSE
                     YLASLAIKEILPLAGRGDSKATLDLLWKIYNDIKVHGGELKV"
BASE COUNT          846 a          535 c          468 g         1073 t
ORIGIN      
        1 cacaatacga taatcaaaac gaacaatatt tcaaggattt gtcgagtcat gaagatagtg
       61 ttattagaac ccgtgtcata tgcatattag cagatatttc aggtctggat gcagtagaat
      121 ctattagtag agttcttgag agtgacaaga atgcattggt aagacatgaa gcagcttttt
      181 ctctgggtca gcttggctat ccagctgcta cggccgctct ttccaatgct gttaaatcag
      241 atccaagtta ttttgttaga catgaagcag cagttgcatt gggcgtaatt ggatccgaag
      301 acgcaagaga aacactcaat gaggcattga aagatgaaag tgaagaggta agagaatcag
      361 caattattgc acttgcaaat ctcgattatg tctctaccat aaaaagaaac aataaattca
      421 ctagaatgac aggcggataa aggaatagat agagtatata aaaaattaat cattaatatc
      481 atttagaact gttaatggat tgtactgata tttgctaaca ggaaggaaga atattactct
      541 ctctcttttt ttattaaata tctactctgt agagacaagc gaaccatcta cactcattgt
      601 gaatcgataa attctatcaa cctcagaatc ctcgaagatc tctgcatcat gagtgattat
      661 gataatttga gaaagaggac cgtctccatc cttgaaggct tcggagataa tttttaccat
      721 agattttcgt ctttctgtgt cgagatgagc cgtaggttca tctaaaatta tgaaatcgag
      781 tttactcgaa cccatcatat atgatattgc aaatcttaat gcaagcgcta ctgcaacttt
      841 ttcacctccg cttagagaat ttatgtcaat ttctccatgc cttccataac agataatgtc
      901 tacatctttg actttctctg ctaaatctat tcttgaaatt cctatgttaa acatggtcgc
      961 atattccgaa gccttaaatg agatcgtttt taaagcccat gaacgaagac ttaatcctac
     1021 caacccatca cgattaaaca cagttgctct aattttttcc aatatagtga tgtattttgc
     1081 ggcatagtcg agttctgtta agattttgtt agagtcatca ataacttttg tcgcttgttg
     1141 aatagatttt tgagatgacc ctattttcat attaatttca agcaaagcat cggaaaggcg
     1201 ggtatggttg agctttgcat ctaaataatc ttgtattctc aagtccttta cttgatattt
     1261 aagttttata atattctcga ccaaggattt tgaaaagtgg tcaatcatga agatcgtggc
     1321 atcttcatct actcctacaa tagtcttggg aagttttgac aaatcattct ttttttgaaa
     1381 aagttccttc tccaacttta ttatatcttg aaggttgcaa atattatttg aagcgagaaa
     1441 cttttcagct gctgcaattc tcttttcttt ttcttctaga aaagattctt ctttttttga
     1501 attgattctc tctgttaata gttttgatcg ttcttcagtt ttctttttca tttcattttt
     1561 aatatgacct gtatccaaga tcttgttaac cgtttgaact gttgaattac agacaggaca
     1621 ttttccatcc ttgatttcta tttttcttgc aaattctaat aatcccttga gccttccaaa
     1681 ttctccttca ttatttataa ttctgatctc tgcatcctca acctcagatc ttaccatttg
     1741 aagattaatt ctgatttctt ccctttcaga aactatgtgt atcgagtttt gagcttcttt
     1801 tactatgcga tcaagtttta taatatcctc tgaaagacaa tctttttttt cattcagata
     1861 ttcaataagt gagttctcca ttgttttaag ctctcttgcc tttagtatca atggttcaat
     1921 tcgttctatt tctttttcaa gtgaatccaa attcgctttt attctatttc tttcactttc
     1981 taattgcttt agaatgtttt ctgcatcaaa gagttcagac atattgagtt gtattgtatt
     2041 gcgtattgat tcaatttgtt tatcatcaaa tccattatta tgagtacgta atctttccct
     2101 gaagccatca attgtctcat gcatagtttg ataagcaaga tccaatctat cgataccaat
     2161 cattccattg aggagctctt tgaaatcttt aggatgaaac tctattattc tgttgagttc
     2221 tccttgctgg ataatagttg ctactttcaa tttcttatag tctaacccaa gagtctttgc
     2281 aacttctgca ctcatggact ctccaaattg ttttctttct ccggctacaa tgggtttatt
     2341 tacaatattg tttgagtctg atagaagatc taattttgct gatatcgatt gccctaaaga
     2401 tcctaactgc ctgtaggcac tatattctct tgaattaaca taaaagatta gacgaacata
     2461 ggacgaggaa gcgcctctga gtataagatt cttattggat tttcttgtat gctctccgaa
     2521 caaggcgaaa gttattgcat ctattatact cgatttacct gagccgttat gtcctacaaa
     2581 aatcgtaatt cccttctcta acaataaaga ggtatcccga tgtgatatga aattatgtag
     2641 ctcgatgtcc tttatcatat tatactttta attctcctcc atgtactttt atatcattgt
     2701 atattttcca aagcagatct aatgtcgctt tcgaatctcc tcggcctgcc aaaggcaata
     2761 tttcctttat agctagtgaa gctaaatatt ctgactttaa cgcctctgct gctagctttt
     2821 gtaattcatt gtcgatatca aaaggtttct catcataagt tagaggtgta gttgtgtatt
     2881 cttctaatgg ttgccatata taatgtaaac aggaataatt ta
//
LOCUS       DATABJ010000029         3877 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1981250, whole genome shotgun sequence.
ACCESSION   DATABJ010000029 DATABJ010000000
VERSION     DATABJ010000029.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3877)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3877
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1981250"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            102..377
                     /locus_tag="VHF44_00475"
     CDS             102..377
                     /locus_tag="VHF44_00475"
                     /inference="COORDINATES: protein motif:HMM:NF025392.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nickel-binding protein"
                     /protein_id="HEX2124055.1"
                     /translation="MAIFLDVHKVPFKEDHLKELVHSPADEFGVRHVNLFYNKEASVC
                     FCLLEAPDREAVVKHHDKVSIQCEWISEVTMATGNQFFPQNDMDSAA"
     gene            1065..2372
                     /gene="asnS"
                     /locus_tag="VHF44_00480"
     CDS             1065..2372
                     /gene="asnS"
                     /locus_tag="VHF44_00480"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004816 - asparagine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006421 - asparaginyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HEX2124056.1"
                     /translation="MYVRADDIKSIDYIGKEVTIRGWVYRLRKQKENTFVLIRDDRGG
                     IIQSIFPSEKVTNLTIESSVEINGVVRQDSRAPEGGFEIKGNDLEIFHIADPDYPIGE
                     YQSPELLLDYRHLSLRMRRMIAIAKIRVSILKYARQWFIENDWMEITPPIVVKGAVEG
                     GSTLFKIKYFDEEAYLSQSAQLYLEAMIFCLGRVWCLTPSFRAEKSRTIRHLAEFSHL
                     EAEAPWVNLEDILNIQEQLISYIVQKTVEERTKEFALLKRDVSQLKKVKVPFDRIQYE
                     EAIEILRSKGFSIEEKNGKKRNIRKGDDLNIESERELTRNTEKPIFIIGYPIQVKPFY
                     VKEDPKNEGIGLAADMLAPSGFGEIISGGLREEDITSITKRIEKEGLNPDAYKWYLEL
                     RKYGSVPHGGFGLGIERLMRWIINIEDIKDTSLFPRTMSRATP"
     gene            2519..3328
                     /locus_tag="VHF44_00485"
     CDS             2519..3328
                     /locus_tag="VHF44_00485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEX2124057.1"
                     /translation="MSEQPEEGAGSLFFELAGDLRLSMLMKLTHKQYRLSQLATELDA
                     TMQEAHRNMTRLIDSGLVMKDSEGDLVLTPYGITIVSLIPSYDFLFNQKEYFLEHSLG
                     ELPRKFIQRLGSLHNCEIVHGVMAILQRWKTLYAMSNEYIKEIMAQVPLDLIETVSDR
                     VQMGVKFSYIFASNVVIPKGRSQILQKIGWRNLMAKGLVERRMLDEVKIMTIFNEKQS
                     CVLFPNLKGEPDLNIMFYSEDNEFHDWCEDFFFYQWEKASAFDEGKLSPEV"
BASE COUNT         1380 a          579 c          743 g         1175 t
ORIGIN      
        1 taaatgatta tcgatactaa gatctatgta caaaataaaa taatcatcta tggagaagaa
       61 tgggaaattt tttatagcat tgatataatt atagatataa tttggcaata tttttagatg
      121 ttcacaaggt accttttaaa gaagatcatt taaaggagtt agtccactct cctgctgatg
      181 aatttggtgt tagacatgtg aatctcttct ataacaagga ggctagtgtc tgtttttgtc
      241 tgcttgaggc tccagataga gaggcggttg taaaacatca tgacaaagtt agcattcaat
      301 gcgaatggat tagcgaagta actatggcaa caggaaatca attctttcct caaaatgata
      361 tggattctgc tgcttaatcc tattaacttt taaacaaaaa cccagatact tagttgagtg
      421 tatttgattg tgttgctaca aaaaatagat aattctcaac cgcatatgtc aaactcgaat
      481 gtcggatgga aacacatatt tcattatgat aatttaggat tatgtattac tgataataag
      541 catttataac atacacatat ttgtatattt gtctacgata aagatgatca gataagattg
      601 cctttctcta aatgcatgtg taaaaccgat gatcttcatc agaggaaaat tctgatcagg
      661 tatttagaat tttctaattt gaaagaaaca tgcgttgagc atgtcaaatt cacatttaat
      721 tataagaaaa atatcatgag tatagatata cccgattatc gcaaaagagt agaatttaat
      781 atatatgatt tcatagactg ggatcaggct atgtatccta atgatccgtg ttttgtaagt
      841 tagtagagag gatgtggagg gggcttactg aagccaagga tatgcgaaat tgttacaaga
      901 accactaagg tcgatataat atatatatat atattctaat attaattgca acatatagat
      961 aaatttgtaa ctgttcttat cactcattgt tacatttagt accttgattt tgaaaagaag
     1021 atattctgat aaatttaaga atcacgagga agcgacttat caatatgtat gtcagagcag
     1081 atgatataaa gtctattgat tatattggaa aggaagttac tataagagga tgggtatatc
     1141 ggctaagaaa acaaaaggaa aacacttttg tcttgatccg ggatgatcga ggcgggataa
     1201 tccagagtat atttccaagc gagaaagtta caaatctgac tatagagtcc tctgtagaaa
     1261 tcaacggtgt cgtgaggcaa gatagccgag ctccagaagg tggatttgaa atcaaaggca
     1321 acgatttaga aattttccat atagcagacc cagattaccc aataggagaa taccaaagcc
     1381 cagaactact attagattat agacatctct ccctgcgaat gagaagaatg atagcaatag
     1441 caaagattcg cgtttcaatt ttgaaatatg cacgtcaatg gtttattgaa aatgattgga
     1501 tggaaataac tcctccaatt gttgttaaag gtgcagttga gggtggctct actctgttca
     1561 aaataaagta ttttgatgaa gaggcatatc tctcacaaag tgcacaatta taccttgaag
     1621 ctatgatatt ctgtctgggt cgtgtctggt gtcttacccc ttcatttaga gcagaaaaat
     1681 caagaaccat taggcatctg gcagaatttt cacaccttga agctgaagct ccatgggtta
     1741 acctagaaga tatattgaat atacaagaac aattgatctc atatatagtc caaaagacag
     1801 tagaagaaag aacaaaagaa tttgctctgc tgaaaagaga tgttagtcaa ctaaaaaaag
     1861 tcaaagtacc atttgataga atacaatatg aagaagcaat tgaaatttta cgatccaaag
     1921 gattcagtat agaagaaaaa aatggaaaga agcgtaatat aagaaaggga gatgatctta
     1981 atatcgaatc agaacgtgaa ttaacaagaa atactgaaaa acctattttt ataataggtt
     2041 atccaattca agtcaagcca ttttatgtca aggaagaccc caagaatgaa gggataggac
     2101 ttgctgcaga tatgcttgcg cctagcggtt ttggagaaat tattagcggt ggtttaagag
     2161 aagaagatat cacatccatt acaaagagaa tagaaaaaga agggttgaat ccagatgcct
     2221 ataaatggta tctagagctg agaaagtatg gatccgttcc acatggagga tttggactcg
     2281 gtattgaacg cttgatgaga tggattataa atatagaaga tattaaggat acatctcttt
     2341 ttccaaggac aatgtcaagg gctacgccgt gagctttgac ctcctgctat gcttatataa
     2401 atatgcatca cgatatataa ttatgatata cttcgaattg cagtttccag aagttataga
     2461 taacgctcta caattccttt aacaagttta aatttgagat atgcggaatg tcagttaaat
     2521 gtccgaacag ccggaagaag gagctggctc tcttttcttt gaactcgcag gtgacctaag
     2581 actatctatg ttaatgaaac tgacgcataa acagtaccga ctgtctcaac ttgcgacgga
     2641 actcgatgct acgatgcagg aggcacatag aaatatgaca cgcttaatag actctggtct
     2701 tgtgatgaaa gatagtgaag gagatttagt cttgacacca tatggcatta cgattgtctc
     2761 gcttattccc agttatgact ttttattcaa ccaaaaggaa tattttcttg aacatagctt
     2821 gggagaactc ccccgaaagt tcatacaaag attaggttca cttcataatt gtgaaatagt
     2881 acatggagtc atggcaattc tacaacgttg gaaaacactt tatgcaatgt ccaatgaata
     2941 tataaaggaa attatggctc aggtgcctct tgatttgata gaaacagtaa gcgacagagt
     3001 gcagatggga gttaaatttt catatatatt tgccagcaat gtggtaatac cgaaaggaag
     3061 aagtcaaata ctgcaaaaaa ttggatggcg caatctaatg gctaaaggtt tagtggagag
     3121 gcgaatgctt gatgaagtta agataatgac aattttcaac gaaaagcaat catgtgttct
     3181 atttcctaat cttaaaggag agccggattt aaatataatg ttttacagcg aagataatga
     3241 attccatgat tggtgcgaag attttttttt ctatcagtgg gaaaaagcaa gcgcatttga
     3301 cgaaggcaaa ttaagtccag aagtctagac tacttttaaa ttgtcaatgc tatttggttt
     3361 ttttagatag tttctatgaa cattgcggta atcaagaaaa ctgtgaaaac tgtaatataa
     3421 ttgaagatcc tcgaacaaga acgacaatag agtgaagata aaaatttctg acatggcgtt
     3481 taatagccaa gacgctaaac taatatgtcg aatggctcta aaggataaaa catgaactca
     3541 acatattaat ctaatccata ataaaatatc ttttcatcgt aatcctaaag ttctctcatt
     3601 taatacttaa tcttcctaga tgaccaatat gcagtttttt tatattcagt gataccatac
     3661 aaaattgcaa taggatctac tatttgggag tcacatttat cactaatatt atgcatctgc
     3721 aagcgcctta acaacacaga ataagctttt tttgatattg atggtaagat aacctatagg
     3781 acttagtttg caatatttat tccagtattg aactataaaa taaaaatttc ataatttttc
     3841 attatgtttt tatattcaac ttggaataag ctatcat
//
LOCUS       DATABJ010000030         2176 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1982267, whole genome shotgun sequence.
ACCESSION   DATABJ010000030 DATABJ010000000
VERSION     DATABJ010000030.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2176)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2176)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2176
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1982267"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..796
                     /locus_tag="VHF44_00490"
     CDS             <1..796
                     /locus_tag="VHF44_00490"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF044548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD/NAD(P)-binding oxidoreductase"
                     /protein_id="HEX2124058.1"
                     /translation="PNLREKILSLKSGRIVICIADIPYKCPPAPYEISLLVNDMLIKN
                     GTRKSVDLYICGTTLAALPVAGTHISQSVVNLLNDNNIKFHPLHKLKKVLDKKTVEFE
                     NGNKTNYDLLIVIPPHQVPQVIKNSDLLRDGDQSWIKVDKFTLRTKYTNVFAIGDVTE
                     IRLDNGMTIPKAGIFTEGEAKVVSQQIIDEIKNNNNSNNSRKTHISAFDGKGFCFMEV
                     GNKKAGYIDADFYKEGGPVVRLDSPSEELYQKKLDFERTRLNEWLT"
     gene            877..1140
                     /locus_tag="VHF44_00495"
     CDS             877..1140
                     /locus_tag="VHF44_00495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124059.1"
                     /translation="MDSNSSDSHCDARVRAYKNGKTFEECKEEARQKTEILSKEILER
                     GEVSWGRIMETVDFDELVYKLTLKYLRQKGYDIGYNKLARVKA"
     gene            1267..1548
                     /locus_tag="VHF44_00500"
     CDS             1267..1548
                     /locus_tag="VHF44_00500"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124060.1"
                     /translation="MIEDSIHSGRYPMGEDTEKQMEHHVQIINRSSSDDLKDKDIKIE
                     VRIKDLYVLNNYIQSIQHLPGVIEIDALDSFRMLNRRVGRIEKPNTSFK"
BASE COUNT          820 a          351 c          423 g          582 t
ORIGIN      
        1 cccaaatctc cgagaaaaaa tactctctct gaaaagtggt cgtatagtga tatgtatcgc
       61 ggatattcca tacaaatgcc cacccgcacc ttatgagata tcattattgg ttaatgatat
      121 gttaattaaa aatggaacac ggaagtccgt tgatttgtat atatgtggaa ctacacttgc
      181 cgcattaccg gtagctggaa cgcatataag tcaaagtgtt gtcaatttgc ttaatgataa
      241 caatataaag ttccacccat tacataaatt aaaaaaagta ttagataaaa aaacagtaga
      301 atttgaaaat ggcaataaga caaactatga tctcctaata gtaattcctc ctcatcaagt
      361 ccctcaagtt atcaagaatt ctgatttatt aagggatgga gatcaaagtt ggattaaggt
      421 tgacaaattt acccttagaa caaaatacac caatgtcttt gcaataggcg atgtgacaga
      481 gattagactt gacaatggaa tgaccatccc caaagccgga atatttacag agggtgaagc
      541 gaaggtggtc agccaacaaa ttattgacga gattaaaaat aataacaata gtaataatag
      601 tagaaagacg cacatttcag cgttcgatgg taaagggttt tgctttatgg aggtaggtaa
      661 taaaaaagca gggtacattg atgctgattt ttataaagaa ggaggtccag ttgttaggct
      721 tgattcccct tcagaagagt tatatcaaaa gaaacttgat ttcgaaagaa ctagattaaa
      781 cgaatggttg acgtgacact aaccctgaag atgaagaaag cgtctgtcac aataactatt
      841 attagtcgct ccttttaatt ttagatatgt ttagacatgg attctaattc tagcgacagc
      901 cattgcgacg ctcgtgtgcg tgcatataaa aatggcaaga cctttgagga atgcaaagaa
      961 gaagccagac aaaagactga aattctatca aaagaaatct tggagagggg tgaagtttct
     1021 tggggaagaa taatggaaac ggtagacttt gatgaattgg tttacaaatt aactttaaaa
     1081 tatctccgac aaaaagggta tgatataggt tacaataaac ttgccagagt taaagcataa
     1141 catcaccgct atcttgctcg ttcgctaaaa agattagtac tgttgtctgt gtgcgtgagt
     1201 attatcaaat acaataaata agtatatgat ttattgtaat ctatgaaaat ttctgaatta
     1261 tgcaaaatga ttgaagattc aattcattct ggaagatatc ctatgggtga ggatactgaa
     1321 aaacagatgg aacatcatgt gcaaatcata aaccgatcat catccgacga cttgaaagac
     1381 aaagacatca agatagaagt aaggataaag gatctttacg tgttgaacaa ctatattcaa
     1441 agtatacaac acttacccgg agtaattgaa atagatgcat tagattcatt taggatgttg
     1501 aatagacgcg taggaagaat tgagaaacca aacacttcat tcaaataaag taaagtatgt
     1561 tatttttgtc ctgactccag cagcaggaca tcgtgcacaa agttcactca accgaaaata
     1621 gaatcctcaa atgccaataa attgtagtag acataacggc atacaaaaaa caagggcaaa
     1681 aatagagaag aaatagaata aagagccaga cagaatttgt atgtcttcgg agagactaaa
     1741 ggatatacaa caatcaggct cgacctaact aagtggtaag aagaaatgga gaaaaacagc
     1801 cttaaacata gcaaaaagag gttctttgga ctgtacaaat atagcactac actagttgac
     1861 atcaagatac gccagaaagt atcctaataa caatctaaaa ctgaagagat tccagtatgg
     1921 tagtcaacca aatgacaacc cataatggat cgcaacatcc aaacaagcac agatacaaaa
     1981 aagggataat gcttttattt atggattggc gttcattatc gtatcatcaa ctttgacgtt
     2041 gctcttacaa aggttctaga ccactgggaa aaagtataag gaaaaacaat agtagcgttg
     2101 acgagtaatt cagcattctg ttttattaag catcatacac tgccaacacg agaaggggtt
     2161 ttctgttatc cttgtg
//
LOCUS       DATABJ010000031         6776 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_678142, whole genome shotgun sequence.
ACCESSION   DATABJ010000031 DATABJ010000000
VERSION     DATABJ010000031.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6776
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_678142"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1005
                     /locus_tag="VHF44_00505"
     CDS             <1..1005
                     /locus_tag="VHF44_00505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol-3-phosphate synthase"
                     /protein_id="HEX2124061.1"
                     /translation="QGVGYYNKNRESIGLTAYNLGGFEPGDIEFVAAFDVVDTKVGKD
                     LSEAIFEKPNNTVKIYDVNKMDVKVERAEVLDGIGRHYNEKVKISKEPATDVAKVLKD
                     TQAEVLLNYLPVGSQRASQFYAERCLDAGVCFINAIPVFIASMPKWQQAFQNRNLPCA
                     GDDVMSQLGATVLHKTLVKLFVDRGVKIDETYQLNIGGDMDFYNMLDEERLEDKRKSK
                     TSAVEAMIPYQIPMRIGPSDFVRFLENDKICYISMKGRYFGNIPVELDLKLRVVDAYN
                     SAGVMIDAIRGAKLALDRNISGPLESISAYCFKHPPVQMPYSQAKANFIEFVEGKRER
                     "
     gene            1094..4636
                     /locus_tag="VHF44_00510"
     CDS             1094..4636
                     /locus_tag="VHF44_00510"
                     /inference="COORDINATES: protein motif:HMM:NF014516.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003682 - chromatin binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_process: GO:0007076 - mitotic chromosome condensation
                     [Evidence IEA];
                     GO_process: GO:0051301 - cell division [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation SMC family protein"
                     /protein_id="HEX2124062.1"
                     /translation="MVYIKKLEIYGFKSFGFRNTIISFEKGLVAVTGPNGSGKSNILD
                     AILFAIGENSPKALRVNKLQSLFHDSQNSSHRLIRVSLTFDNADRGIPIDSDLVILTR
                     EMEGQTGDSQYHLNGKKVSKTTIVELLEVVMAAPNKINIVQQGMITRISELNVEERRK
                     IIEDIVGLSYFDEKKTEALKQLEESDRRLEVALARMGEIRRRIDELEIERNDQLRYEQ
                     LESELKRFKAIQLSNAIISIRNKLELQNRLLESNSLKVTELFKQIEEIQSQIQKVDSE
                     KLKFIQEIDIANRSKAQIGSRIANIVYESERMKAIMKESEQRCLQIEKRISSIDLEKQ
                     NMNRQLDDFRHQADQNKTVMNYKSSKIIALKTDLGDIDNELEKLTRRIAIYARIRDKL
                     EYRYDTLLRIKNDLDVSFARLEEKVRSNEEKLKANKLNAIYLKNEVDNGTTLLADIHD
                     NLKLQNTKLEAEVRTLQNLKTLKSTFEKELKSSSILLNRADNVTTKYEAKSVIAKNAR
                     NEDFAIAELMKGSEKFGIKGLVHHMMTWDKKYEKSVFAAGSEWMKAFVVDNVKSMISI
                     AEYAKTKKLPRLKIIPLDIIKYVKYSKIPYEDVSIIGNLADFVYSDFKELSNFIFGNT
                     FIVRGPTAAYILSKQGYRAVSVDGELFEPKGACMSLDFGSKISDLTKAILLSSTVDIL
                     RGSLETLRTTIETKKNDLEELILKINCSESEKIKIEERISNLNQQISSQTIMMGQVEK
                     KQQQLVSDNALFQSERNTLTIDVDRVVRRLSILTASMKKVLERIGAIDDSTIRNELDN
                     INSRRNLILKSIEEVDFELRQTITSSAGMSSKIEISLERMKGMEDEKVQLISELSHRR
                     TQTKELEIKLKSIESELISLRDQEQQIIDSSGRSYSIVQEYEKKLKLMNENERKLNKE
                     YNTIEKDNALLRKDILDQAAQESRLTNDLHWLGYKSLLETFDVDTVIKELTDEYEAIK
                     TRINLRADESYVQVIEGYRSMSNRKNHLETERNSIVLFIEEIVKEKENVFMDAFNKVD
                     NDIRKTFSQVTGGVAWLEIENVEDVFSSGIMLMVQFPGKQGRESTALSGGEKTMAATI
                     FLLAIQALKPSPFYLMDEVDAHLDAQNTERLSQVLLERSKDNQIIMVTLKDSTITKVG
                     LIYGVYSKNGVSQVVKYRYPNQLSLAEITSVEGK"
     gene            complement(4770..5615)
                     /locus_tag="VHF44_00515"
     CDS             complement(4770..5615)
                     /locus_tag="VHF44_00515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2124063.1"
                     /translation="MDTILQVNNVKKYFPVNIGIRRIFHSTGRHYIKAVDDVSLTIEK
                     GKVFVLAGGSGSGKTTLARLILRAIDPDSGSIVFDGEDITRTTGKKLKKFRINTQMIH
                     QDPYTSINPRMKIMDVIMEPLNIYNKQDSKQQRIEKVLKSLEDVRLEPAIDIAEKFPY
                     MLSGGQRQRASLARALVLKPKLIIADEPVSMLDVSIRAEILEIVKTLKDKFQISYLYI
                     THDLSTARYIGDNIAIMFNGKIVEAGPIDRVLLNPFHPYTQALIDAVPELNTDNTLQN
                     KTNLY"
     gene            complement(6066..>6776)
                     /locus_tag="VHF44_00520"
     CDS             complement(6066..>6776)
                     /locus_tag="VHF44_00520"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEX2124064.1"
                     /translation="AGGLALALFAINFSTKPATPQRTYGFYRIEILAALANGAVLILV
                     SIYIIYDAYGRIIEPPEIQSIPMILVAVIGLAVNLVGMKLLKVYAKDNLNIEGAYLEV
                     LKDTLGSVSVILVGVIIFTTKFYLADPIISVGLAFYILPRTWSLIKKSINILMEGVPM
                     NISYEEVKKAILQIKGVTGVFDIHIWTITSGMDAITAHVVVSDPSKSQTILKEISSIL
                     EKRFKITHTTIQIETYHT"
BASE COUNT         2444 a         1052 c         1251 g         2029 t
ORIGIN      
        1 caaggtgttg gttattacaa taaaaacaga gagtcaatag gtcttactgc ctataattta
       61 ggaggatttg aacctggcga tattgaattt gttgcagctt ttgatgtagt ggataccaag
      121 gtaggcaaag acctttcaga ggcgattttt gagaaaccaa ataacacagt caagatctat
      181 gatgtaaata aaatggatgt caaggttgaa agggcagagg tgttagatgg aataggtaga
      241 cattataatg aaaaggtgaa aatctctaag gaaccagcta ccgacgttgc aaaggttcta
      301 aaagatactc aggcagaggt tcttttaaat tatcttcctg ttggaagtca acgtgcaagc
      361 caattttatg ctgaaagatg tcttgacgcg ggagtctgtt ttattaatgc catacctgtt
      421 tttattgcct ctatgccaaa atggcaacaa gcatttcaaa ataggaatct tccttgtgca
      481 ggtgatgatg taatgagtca gttgggtgct actgtattac acaagacatt agtaaaattg
      541 ttcgtagaca gaggagtaaa gatagatgaa acttatcagc tgaatatagg cggtgacatg
      601 gatttttaca atatgcttga tgaagaaaga cttgaagaca aaagaaaaag taagacaagt
      661 gcagtagaag caatgatacc atatcaaatt cctatgcgta ttggaccgtc agattttgtt
      721 agatttctag aaaatgacaa aatatgctac atttcaatga aaggcagata ttttggtaat
      781 attccagtag aactagatct taaactacgt gtagtagatg catataacag cgcaggagta
      841 atgattgatg caataagagg agcaaaattg gctcttgaca ggaacatttc tggtccgctt
      901 gagagcattt ctgcatattg ctttaaacat cctcctgtac agatgccata ttcccaagct
      961 aaagcaaatt tcatagagtt tgttgaagga aaaagagaga gatagatata ggttaaaaat
     1021 atttacaaaa aggagatcga taatgctcta aaacacataa tagtcccagt aaactctcat
     1081 tagcaatcat tcattggttt acattaaaaa actcgaaatt tacggcttca agtcatttgg
     1141 ttttaggaat acaataatca gttttgaaaa aggacttgta gccgtcactg ggcctaatgg
     1201 ctcagggaaa agcaatattt tagatgctat attattcgct ataggtgaaa atagccctaa
     1261 agcattacgt gtcaataaac ttcaatcgtt atttcatgat agtcaaaata gctcacatcg
     1321 actcattaga gtaagtttaa catttgacaa cgcagataga ggcattccta tagattctga
     1381 tttagtgatc ttaacaagag aaatggaagg tcaaacagga gacagtcaat accatcttaa
     1441 cggcaaaaag gtatctaaaa ccaccattgt ggaattgcta gaagtagtaa tggctgcacc
     1501 aaacaagatc aatatcgtac agcagggaat gataacccgt atatctgaat taaatgtgga
     1561 ggagcgtaga aagattattg aggacattgt tggactctca tattttgacg agaagaagac
     1621 agaggcacta aaacagttgg aagagtctga cagacgactt gaagttgcac ttgcaagaat
     1681 gggggaaatt cgcagacgaa ttgatgaatt agagatagag agaaacgacc aattaagata
     1741 tgagcagtta gaatccgaac ttaaaagatt caaagcgatt caactttcaa atgcaataat
     1801 ctcaattaga aataagctgg aattacaaaa cagacttctc gaatctaata gtctaaaagt
     1861 tacagaattg tttaaacaga tagaagaaat tcaatcacaa atacagaaag ttgattcaga
     1921 aaagctaaaa tttatccaag agattgatat tgcaaatagg tccaaagcac aaattggcag
     1981 tagaatagca aacatagtat atgaatctga aagaatgaaa gcaatcatga aggagtctga
     2041 acagcgttgc cttcaaatag aaaagcgaat ttcttcaata gatttggaaa aacaaaacat
     2101 gaatagacaa ttagatgatt ttcgccatca ggccgatcag aacaagactg ttatgaatta
     2161 taaatcatcc aagattatcg ctttaaaaac agatttagga gatatcgata atgaattaga
     2221 gaaactgact agaagaattg caatttatgc tagaattaga gataaattag aatatcgata
     2281 tgatacgctt ttgcgaatca aaaatgatct tgatgtttca ttcgcaagac ttgaagaaaa
     2341 agttagatct aatgaggaga aattaaaagc taataaattg aatgccattt atttaaaaaa
     2401 tgaagtagat aatggcacaa cgttattggc agatattcat gataatttga aattacaaaa
     2461 tacaaagttg gaagctgaag ttagaacact tcaaaattta aaaactttaa aaagtacctt
     2521 tgaaaaagag ctcaaaagct catctattct tttaaataga gcagacaatg tcacgacgaa
     2581 atatgaagcg aagtctgtta ttgcaaagaa cgctaggaat gaagactttg ctattgcaga
     2641 attaatgaaa ggttcagaaa aatttggaat caaaggtttg gttcatcata tgatgacctg
     2701 ggacaaaaaa tatgaaaagt cagtttttgc ggccggctca gaatggatga aggcatttgt
     2761 agtcgataat gtaaaatcaa tgatttcaat tgcagagtat gcaaaaacaa aaaaattgcc
     2821 tcgtcttaag attattcctt tagatataat aaaatatgtc aaatactcta aaattcctta
     2881 tgaagatgtc agcattatcg gtaatttagc cgattttgta tattctgatt ttaaagaatt
     2941 aagcaatttt atatttggca atacttttat tgttagaggt cccacagctg catatatcct
     3001 gtcaaaacaa ggataccggg cagtatctgt tgatggcgag ctttttgaac cgaaaggtgc
     3061 atgtatgtca ctggattttg gatctaaaat ttcagatctg acaaaggcaa tacttcttag
     3121 ctctactgtt gatattctaa gaggatctct cgagacatta agaactacaa ttgagacaaa
     3181 gaaaaatgat ctagaagaac tcattttaaa aattaattgt tcagagtctg agaaaataaa
     3241 aattgaagaa agaattagca atttgaatca gcaaatttca tctcaaacta ttatgatggg
     3301 gcaggtagaa aaaaaacaac aacaacttgt ctctgataac gcgctatttc agtcagagag
     3361 aaatactcta acaattgatg tggacagagt tgtacggcga ctttccattt taacagcttc
     3421 aatgaagaag gttttagaaa gaataggtgc tatagatgac tctaccatta gaaatgaatt
     3481 agataatata aattcaagaa gaaatctaat tctcaaatca atagaagaag tagattttga
     3541 attgcgtcaa acaataacat cgtcagcagg tatgagtagc aaaatcgaaa taagtttaga
     3601 acgaatgaag ggaatggaag atgagaaggt gcaattaata tccgaactca gccacagacg
     3661 tacccagaca aaagaattag aaataaaatt aaaatcaatt gaatcagagc ttatttctct
     3721 cagagaccaa gaacagcaga taatagattc gtcgggcagg tcgtatagta tagtacaaga
     3781 atacgaaaaa aaattgaaac tgatgaatga aaatgaaaga aaactcaata aagagtataa
     3841 cactatagaa aaggataacg cattacttcg aaaggacatt ctagatcaag cagcgcaaga
     3901 gtcacgcttg actaacgatc tgcattggtt gggatacaag agtttgctgg aaacatttga
     3961 tgtcgataca gtaataaaag aactcacaga tgaatatgaa gcaataaaaa ctagaattaa
     4021 tttacgtgca gatgaaagct atgttcaggt cattgaaggt tatcgaagca tgtctaatag
     4081 aaagaaccat ctggaaacgg aacgtaattc tattgtcctt ttcatagagg aaattgtcaa
     4141 agaaaaagaa aatgtcttca tggatgcatt taataaagtt gataatgata taagaaagac
     4201 tttttcacaa gtaacaggtg gagtagcatg gttggagata gagaatgttg aagatgtatt
     4261 ctcaagcggg ataatgctaa tggtacaatt tccaggaaaa caaggtcgtg agtcaacagc
     4321 attgtctggt ggggaaaaaa ccatggccgc gacaattttc ttattagcaa ttcaagctct
     4381 caaaccatct cccttttatt tgatggatga agtggatgcg catcttgatg cccaaaatac
     4441 tgaaaggtta tctcaagtgc tgcttgagcg ctcaaaggat aaccaaatta taatggttac
     4501 gctgaaagat tctacaataa ccaaagtagg cctaatctat ggcgtgtatt ctaaaaatgg
     4561 tgtttcacaa gttgtaaaat acagatatcc aaatcaactg tcacttgcag agatcacatc
     4621 cgtagagggt aaataaaaaa gagatataaa agatcttttt cttcttctta caatttcgat
     4681 tcgtttttac acttacccat tgaatatgga cattgataga gaaatttacc tcacactttc
     4741 agattgattg aactgtatct tctgcctctt taatataaat ttgttttatt ttgcaaagta
     4801 ttatcagtat tgagctcagg aaccgcatca attaacgcct gcgtataggg atgaaatgga
     4861 tttaacaaaa cccgatctat cgggcctgcc tcaactattt taccattaaa cataattgca
     4921 atattatctc ctatatatct agcagtagat agatcatgag taatatagag atacgaaatt
     4981 tggaatttat cttttaaagt tttcacaatc tcgagtattt cggctctgat agaaacatct
     5041 agcatagaga caggttcatc agctataatt aattttggtt tcagaacaag tgctcttgct
     5101 agagacgccc tttgtcgttg acctcctgaa agcatatatg gaaatttctc agcgatatct
     5161 atcgcaggct ccaaacgtac atcctctaac gattttaata ctttttcaat gcgctgttgt
     5221 ttagagtcct gtttattgta gatatttaat ggttccatta tgacatccat tattttcata
     5281 cgaggattaa tagaggtata agggtcttga tgtatcatct gtgtatttat gcggaacttc
     5341 tttagttttt ttccagtggt tctcgtaata tcttcaccat caaacactat cgatccacta
     5401 tctggatcaa ttgcgcgtaa aattaatctt gccaaagtag tctttccaga tccagatcca
     5461 cctgcaagaa caaacacttt tcctttttca attgtgagac ttacatcatc tactgctttg
     5521 atataatgtc tgcctgtcga atggaaaatc ctacgaatac ctatatttac aggaaaatac
     5581 tttttaacat tatttacttg aagaattgta tccaattgat agcattattt atttgctaat
     5641 tcagaatata aataatcctg aagagtcaat tttgatagca agttaattca tcaataacgt
     5701 acattatttt gatttcgtca tcttagtcaa tatagctaat agatagtatt tatgtattta
     5761 tgataataat gatgtttcta tttatagaaa gcatgtatat acgtaagcat atatatatat
     5821 tgcttgtaat tgttttttat tatttctata ttacttagga aataggatca atcgtatagg
     5881 ttgaattaac tgtatcaata ttaccataca tcccaacaac tatacagtat ttagagtaaa
     5941 ataattatgg aaagtattgt aggcgcacaa aacaaaattc gtcagtccat atctatgacc
     6001 gtctcccagt aaatagaagc ttgtaaatta ttacaagttt atcattcctc ttttccaggc
     6061 ttgcattaag tatgataggt ctctatttga attgttgtat gtgtaatttt aaatctcttt
     6121 tctagaatag aagatatttc ctttagaatt gtttgtgatt tgctaggatc acttactact
     6181 acatgtgctg tgattgcatc catgccagat gttatagtcc atatatggat gtcgaataca
     6241 cctgttacac cttttatctg cagtattgct ttctttactt cttcatagga tatattcata
     6301 ggaactcctt ccattaatat gttgatcgac ttttttatca aagaccatgt cctaggaagt
     6361 atatagaatg ccaggccaac actgataatt ggatctgcaa ggtaaaattt ggtagtaaaa
     6421 attatgacac ccaccaaaat aacgctaaca gaacctaaag tatctttaag aacttccaaa
     6481 tatgcccctt cgatattcag attatccttg gcatagactt taagtagttt cattccaacc
     6541 aaatttactg ccaagccaat aacagctacc aatatcattg gtatactttg aatctctgga
     6601 ggctcaataa tacgtccgta tgcatcgtat ataatatata tagagaccaa aattaataca
     6661 gcaccatttg ccaatgctgc aagtatttct attctataaa agccataagt tcgttgtgga
     6721 gttgcgggct tggtagaaaa atttatggca aagagagcca aagccagacc tccagc
//
LOCUS       DATABJ010000032         4074 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_896205, whole genome shotgun sequence.
ACCESSION   DATABJ010000032 DATABJ010000000
VERSION     DATABJ010000032.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4074)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4074)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4074
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_896205"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..213)
                     /locus_tag="VHF44_00525"
     CDS             complement(<1..213)
                     /locus_tag="VHF44_00525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124065.1"
                     /translation="MCAHHEKEQGLRKNHNLVAVGWSILVMGLSLAAVIILWMWFGHI
                     GPTFSEDVLAEQQRMLRERYDLPAQRV"
     gene            complement(421..2772)
                     /locus_tag="VHF44_00530"
     CDS             complement(421..2772)
                     /locus_tag="VHF44_00530"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEX2124066.1"
                     /translation="MEPKIKDKSWNPAVEQIILKKWEEIDIYKFSIKKEKEAFVIDTP
                     PPYPSGRPWHIGAAAHYAQIDMIARTARKMGYNVMFPIGIDRNGLPVEIYTEKKHKVR
                     MRQMDREKFLDLCRVALDDLEAEMIQIMKNMGLSANFEEYYRTDSDEFRALTQSTFIE
                     LWERELVYLANRPNNYCSDCGTTIADAEIIYEDIPTKLIYMNFKVKETNENIIIASTR
                     PELLFACQSVIVNPEDERYLGLQGKHAILPLFDREVEILPHHLAKPEFGSGAVMVCSY
                     GDHNDVQIFRELGLKEIVALNSNGMTTSAAGPYSNLWVKQARIRIIEDLKNAGLLSKE
                     ENIIHRTPLCERSNTPIEIIPLQDYFVKQLDFIPKLKELAMKIKFHPEMHKQILLNWI
                     DSVAIDWPVSRRRFYGTEIPIWYCINCKTPNLPKPGKYYRPWKEKPPFEKCNKCGNTE
                     FIGEDRTFDTWMDSSITPLFITKYKRDQELYKHSYPTKIRPQAKDIVRTWLYYTMLRC
                     YQLTDQLAWSDAWIMGYGVDEKGEKMSKSKGNVIDPFPIVHRYGADTFRFWSAIEANL
                     GHDFRCSEQRILNSQKFLSKLWNLGRFLSSFDFISEAPHELSASDKWILAELSNLVDE
                     CEKGYEDFNFFIPANAIREFTWSLFASHYVEMVKGRVYDINDSVGQKSAIFTLHKCLS
                     TILKLLAPLCPFITEELWTKMYSTKSIHLQCLPQAQKYYLEMRKYTQYITEFNSRVWN
                     KKKQTISRETGKPLSLKDSIDITVPIELDAFKKDLCIMHNLRK"
     gene            complement(3317..>4074)
                     /locus_tag="VHF44_00535"
     CDS             complement(3317..>4074)
                     /locus_tag="VHF44_00535"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HEX2124067.1"
                     /translation="VFLVSQGQNICTNCDKFIANERYKSPCYNLVGNYMSKEILMLAI
                     IIIATTTITTLLLTSTISLVDQILPLPSITTVWALNVTGTQDSDTLIGTNKSDNIRGH
                     GEDDMISGLEGNDRITGDMGDDTIHGDRGHDGIRAGEGDDMIFGDSGDDNLFGGPDDD
                     SLTGGPGKDSFNCGEGTDTVIDFDPSKNETMSTNCENMSAPPPTTGGDIAINTPEPPA
                     EEDFVINPFSIPLEEDDDSDGGEEDDGDGNVGE"
BASE COUNT         1222 a          783 c          634 g         1435 t
ORIGIN      
        1 gactctttga gctggaagat catacctttc tctcagcatt ctttgctgtt ctgctaaaac
       61 gtcttctgaa aaagttggtc ctatatgacc aaaccacatc catagaatta taactgcggc
      121 tagagatagc cccataacca atatcgacca tcctacagca acaagattat gatttttacg
      181 caagccttgc tctttttcat gatgtgcaca cataatacaa caatgttaaa ctatgattgc
      241 ttttaaaaat tattcgcttt ttacatatat atttactagt ttaattaaaa caataaacta
      301 tgcaataaaa aacgatgttt ttattattat tcaaagccag atttggaact tttccttatg
      361 ctttaaaatg ttagctgaag cttatttata aaaagatgat actgctccca atagtagatt
      421 tcattttctc aaattatgca taatacaaag atctttttta aacgcatcta actcgatagg
      481 aacggtaata tcaattgagt cttttaatga gagtggcttt ccagtttccc ttgaaatggt
      541 ttgttttttc ttattccata cccgcgaatt gaactcggta atatattgag tatattttct
      601 catctccaag tagtattttt gcgcttgggg cagacattgc agatgaatgc tttttgtact
      661 atacatcttt gtccagagct cttctgtgat aaatggacac agaggtgcaa gtaattttaa
      721 aattgttgat agacatttgt gcaaagtaaa tatagcggat ttctgaccta ctgaatcatt
      781 tatatcatat acgcgacctt ttaccatttc tacataatgg gaagcaaaca gactccaagt
      841 aaattctcta atcgcattgg ctggaataaa gaagttaaag tcctcatagc ctttttcgca
      901 ttcgtcaacc aaatttgaaa gttctgcaag aatccattta tctgaggcag aaagctcatg
      961 tggagcttct gaaataaaat caaatgatga gagaaatcta cctaagttcc atagtttaga
     1021 aagaaacttt tgtgagttta agattctctg ttctgaacat cgaaaatcat gacccaaatt
     1081 agcttcaatt gcagaccaaa atctaaaagt atctgcacca tagcgatgaa cgataggaaa
     1141 aggatcaatt acattacctt tactcttgct catcttctcg cctttttcgt caactccata
     1201 tcccataatc caagcatcag accatgcaag ttggtccgtc aactgataac agcgcagcat
     1261 cgtgtaataa agccatgttc ttacaatatc ttttgcttgg ggtcttattt ttgttgggta
     1321 actgtgtttg tataattctt gatctctttt atattttgta ataaataatg gagtaatgct
     1381 agaatccatc caagtatcaa atgttctatc ttcgccaata aattcagtat tgccgcattt
     1441 gttacatttt tcaaatggcg gcttttcttt ccatggccga taatatttac caggttttgg
     1501 aagattcgga gttttgcaat tgatacaata ccatattgga atttctgtgc cgtagaaccg
     1561 cctccttgaa acaggccaat caattgctac tgaatctatc caattgagca ggatttgttt
     1621 atgcatctca ggatggaact taattttcat tgcaagttct tttaactttg gaatgaaatc
     1681 tagttgcttt acaaaatagt cttgtaatgg tattatttca attggtgtat tgcttctctc
     1741 acacaacggt gtcctatgta ttatgttttc ttcttttgat agaagtcctg cattttttaa
     1801 atcttcaata attcttattc ttgcctgctt tacccaaagg ttactgtatg gtccagcagc
     1861 actagtagtc attccatttg aatttaaggc tactatttct ttcaatccta gctctctgaa
     1921 tatttgcaca tcattatgat caccataact acataccatt acagcaccgg aaccaaattc
     1981 aggttttgct aaatggtgtg gaagaatttc aacttctcta tcaaatagag gcagtattgc
     2041 atgtttacct tgcaatccta aataacgttc atcttctgga tttacaataa cagactgaca
     2101 tgcaaaaagt aattctggcc tagtagaagc aattataata ttttcgttag tttctttgac
     2161 tttgaaattc atataaataa gtttagttgg aatatcttca tagataatct ccgcatcggc
     2221 aatagtagtt ccacaatcag aacaataatt atttggtcta tttgccagat aaacaagttc
     2281 acgttcccaa agctcaataa aagtactctg agttaaagct ctgaattcat cagaatcagt
     2341 acggtaatat tcttcaaaat tggcacttag acccatattt ttcattatct gaatcatttc
     2401 agcttctaga tcgtcaagag caaccctgca aagatcaaga aacttttctc tatccatctg
     2461 acgcattctc actttatgct tcttctcagt atagatttcg actggtaaac cgtttctgtc
     2521 aataccaatg ggaaacatga cattatagcc catctttcta gcagtcctag caatcatgtc
     2581 tatttgcgca tagtgtgctg cagcccctat gtgccatggc cttccagacg gatatggtgg
     2641 cggagtatca attacaaaag cctccttttc tttttttatt gaaaatttgt aaatatcaat
     2701 ttcttcccat ttttttagga taatctgctc taccgcagga ttccaagact tatctttgat
     2761 tttaggctcc atttcgttgt tacatttaat gcatagctat aaggttatta acgttagtat
     2821 attttcatat atattgaata tggcggctgc tgctaccggt caattattac ttttacatat
     2881 cttgataatg gggataatct cattattctt tctgtttaca gtggctagtt ccattctctt
     2941 gataatgata ctccttgctt cagaaatatc tggagaattt gcagcaaatt ctatgtggtt
     3001 agcgacgata ctggcatcaa taattacggt tatattttta caaaaagtaa taggtagact
     3061 ctacgataga ttatactgtg taatagtcca tttcccaaat gacaatcaca ttcgaaaatg
     3121 aaagatgaaa aatgtgtgta taataaagca atcataaaaa attaaaagag atcctcttta
     3181 ccaactaata tataatactt ggtgatcctc ttaaagattt ttaagaggat aaaggaaact
     3241 tgttttatat tgttgttgtt gttttatatt ttgtagccat aatattatta tatttttact
     3301 ctggtcgtct tatttctcac tcaccaacat taccatcacc atcatcctcc tcccctccat
     3361 cgctatcgtc atcttcctct aatggaatac taaaaggatt tatcacaaaa tcttcttctg
     3421 caggaggttc cggagtattt atagcaatat caccacctgt tgtaggagga ggagcgctca
     3481 tattttcgca gttagtcgac atagtctcat ttttagatgg atcaaaatct ataactgtat
     3541 cagttccttc tccacagtta aaactatctt tgccaggtcc tcctgtcagt gaatcatcat
     3601 cagggcctcc aaataagtta tcatcaccgc tgtcaccaaa tatcatatca tctccttcac
     3661 cagctcgaat tccatcatgg cctctgtcac catgtatagt atcatctccc atatcacctg
     3721 tgatgcggtc attgccctca agaccagata tcatatcgtc ttctccatga cctcgtatgt
     3781 tatcactctt attggtacca attagtgtat cagagtcttg tgttcctgtt acattaagtg
     3841 cccaaacggt tgttatagat ggtagtggta atatttggtc tactagtgat attgtactag
     3901 ttaataatag agtagtaatc gtagtagttg ctataataat tattgctaac attaaaattt
     3961 cttttgacat ataattccct actaaattat aacaaggtga tttatacctt tcattggcaa
     4021 taaacttatc acaatttgtg catatgtttt gaccttgtga tactaagaag acgt
//
LOCUS       DATABJ010000033         3199 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1333426, whole genome shotgun sequence.
ACCESSION   DATABJ010000033 DATABJ010000000
VERSION     DATABJ010000033.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3199)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3199)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3199
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1333426"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..425)
                     /locus_tag="VHF44_00540"
     CDS             complement(<1..425)
                     /locus_tag="VHF44_00540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEX2124068.1"
                     /translation="MPNYSYAFQNFDKTKHVRAAIREKDISHKHSREVAVAIKGMSIE
                     KARDFLNDVIRKKIAVPYRRYNNEVAHRSNVRDGFFAGRFPQKPAKEFLKLLDNLETN
                     AEYKGMDLDRLRIISAVVHKGTRLERFTPRAMGRASPKF"
     gene            complement(433..837)
                     /locus_tag="VHF44_00545"
     CDS             complement(433..837)
                     /locus_tag="VHF44_00545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEX2124069.1"
                     /translation="MREFKFRGYSPEQLQSLSVASLLPLLNSRQRRSLDKRVGKYMDD
                     GKRKLREEIKLLREGKLKSQLKTHVRDMIILPDMIGLSISVYNGKEFTPIHIRPEMTG
                     HYLGEYAITNKRVQHGSPGVGSSRSSLYVPLK"
     gene            complement(906..1199)
                     /locus_tag="VHF44_00550"
     CDS             complement(906..1199)
                     /locus_tag="VHF44_00550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEX2124070.1"
                     /translation="MSTKQENRSMTVEKASSIIIKPYITEKTFNLIEKENKLTFIVAE
                     KASKNQIVKALQILYESEASEVNTVRTIQGKKAFIKIKAREGARDLATKMGLV"
     gene            complement(1196..2014)
                     /gene="rplD"
                     /locus_tag="VHF44_00555"
     CDS             complement(1196..2014)
                     /gene="rplD"
                     /locus_tag="VHF44_00555"
                     /inference="COORDINATES: protein motif:HMM:NF012782.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEX2124071.1"
                     /translation="MKSNTILGIDGRESNTIALPEIFETPYRPEVIHKVYVNLLSHTY
                     QRQGRYPAAGEIVSAESRNTGLGIARLARARGEGFPRAGQAAGVAGVRHGRVAHPPES
                     WKEIYKKINKKEKQLGLCSAIAATSQKDLIIKRGHKIGRLSQFPIVVSNDIESISKTK
                     DLRKVLVALGLEEDLIRARSSHKARTGTSRRRGRQARSGISALIVVENDEKLERLSGS
                     IPGVEVKSVQRLSVLDLAPGAKPIRLTIFSQNAIEKLKNVKAPILKVMEMMMRK"
     gene            complement(2011..3009)
                     /locus_tag="VHF44_00560"
     CDS             complement(2011..3009)
                     /locus_tag="VHF44_00560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEX2124072.1"
                     /translation="MGHRKYSAPRRGSIAFRPRARAKSLEARIRTWPESSMEKTSLLG
                     FAGFKAGGLHILTIDDRERTPNFGKQLLNVSTVIVTPPIRVIGIRGYNLNAYGKRAVF
                     DVYAKDLPKELSRKFDAKYNEEAITKSQSFLDSINSIMAVVAVTPRKINMSQKKPFVF
                     EIAVSGNNVRAQYDYLKSLLGKEIHASDVFQVGQYIDVFGITRGKGIEGPVTRFGVKR
                     KQHKSRKSVRAVGTLGPISPAVVMYTVARQGQRGFHQRTEYNKRILMLSNTDKDGENS
                     INPPGGFKHFGLVKGEYMVVRGSIPGVPKRLIKMRHPIRNAQKKVIEPKIVEVIAH"
BASE COUNT          875 a          690 c          503 g         1131 t
ORIGIN      
        1 tcaaactttg ggcttgctct tcccatggca cggggtgtaa accgttcaag tcttgttcct
       61 ttatgaacta ctgcactaat aatccttaat ctatccaggt ccataccttt atactctgcg
      121 tttgtttcta aattatcaag aagttttaaa aattcttttg ctggtttttg tgggaaccta
      181 cctgcaaaaa aaccatcacg aacatttgaa cgatgtgcta cttcattgtt atatcttcta
      241 tatggaactg caattttttt tctaataaca tcgttcaaaa aatctcttgc tttttcgatt
      301 gacattccct ttattgcgac agccacttca cgtgaatgct tatgagaaat atctttttct
      361 ctaattgcag ctctcacatg ttttgtttta tcaaaattct gaaaggcata ggagtaattt
      421 ggcataattc tatcacttta atggaacata caaactggat ctcgatgatc ctacaccagg
      481 acttccgtgc tgaactcttt tatttgtgat ggcatattca cctagataat gtcctgtcat
      541 ctccggcctt atgtgaatag gagtaaattc cttcccatta tatacgctta tagaaagacc
      601 aatcatatca ggaaggatta tcatgtctct aacatgagtt tttaattgac ttttaagctt
      661 gccttcgcga aggagtttta tttcctcacg taattttcgt tttccatcgt ccatatactt
      721 gcctactctt ttgtcaagag acctacgctg cctcgaattc aatagtggta aaagagatgc
      781 tactgataat gattgtaatt gctcaggcga gtagcccctg aatttaaatt cacgcaccaa
      841 ttatatcaat tacaccatca caaaatacta cttttaaatc taacgagaaa taatggcagt
      901 gttccttaca ccagacccat ctttgtcgca agatcccgag caccctcgcg agccttaatt
      961 tttataaatg cttttttacc ttggatagtt ctaacagtat tcacttcact tgcttccgat
     1021 tcatacagaa tttgtaatgc ttttactatt tgatttttgc tggctttttc cgctactata
     1081 aaagttaatt tattctcctt ttcgatcaag ttgaatgttt tttctgtgat atagggttta
     1141 atgataattg agctagcttt ctctacggtc atagatctat tttcttgttt ggtactcatt
     1201 ttctcatcat catctccata actttgagaa tcggtgcttt aacatttttt aatttttcaa
     1261 ttgcgttctg agagaatatt gtcaatctga ttggttttgc tcctggcgca agatctaaga
     1321 cactcaatct ttgtaccgat ttaacttcga ctcctggaat cgatccagac agcctttcta
     1381 acttctcatc attttcaaca actatcaagg cacttatccc tgaccgagcc tgtctgcctc
     1441 ttcttcttga cgtacctgtt cgggctttat gtgatgatct tgctctaatc aaatcctcct
     1501 ctaatcctaa agctacaagg acctttcgca aatcctttgt ctttgaaata gattctatat
     1561 cattagaaac aacaatagga aattgtgaaa gtctaccaat tttgtggcct cgcttgataa
     1621 ttagatcttt ctgactggtc gctgcaatag cagaacaaag acctagctgc ttttcttttt
     1681 tattaatttt cttataaatc tccttccaag attcaggggg atgtgcaacc ctaccatgcc
     1741 tgacacctgc aacacctgcg gcctgtcctg ctctcggaaa accttcgccg cgggctcttg
     1801 caagtcttgc aatgccaagg cctgtattac gtgattctgc acttactatc tcgcctgcag
     1861 caggataacg gccttgtctt tgatatgtat gagacagcaa atttacgtat actttgtgaa
     1921 ttacttcagg tctataaggt gtttcaaata tttcaggtaa cgctatagta ttagattctc
     1981 tgccgtctat tcctagaatt gtgtttgatt tcaatgtgca ataacttcca cgatttttgg
     2041 ttctattact tttttctgag cattacgtat aggatgtcgc attttaataa gccttttggg
     2101 tacaccagga atggaccctc ttactaccat atattcgcct ttaactaatc caaaatgctt
     2161 aaaaccgcca ggtggattta ttgaattttc tccgtcttta tcagtattgg ataacatcaa
     2221 tattcgtttg ttatattctg ttcgttgatg aaatcctctc tgtccctgtc ttgcaactgt
     2281 atacattact actgcaggcg atataggtcc taatgttcct actgcacgaa cactctttct
     2341 tgatttatgc tgttttcgct tcacaccaaa ccttgtaact ggaccttcta taccttttcc
     2401 tctcgtaatt ccaaaaacat ctatatattg cccgacctgg aaaacatcgc tagcatgaat
     2461 ctccttgcct aaaagactct ttaaatagtc atactgtgct ctaacattat tgcccgaaac
     2521 agctatttca aacacaaatg gtttcttctg agacatattt atttttcgtg gagtaactgc
     2581 aactactgcc attatagaat ttatactatc tagaaaagat tgagatttgg ttattgcctc
     2641 ctcattatat ttggcatcaa atttgcgtga aagctccttt ggcagatctt ttgcatatac
     2701 gtcaaatact gcgcgttttc catatgcatt tagattataa ccacgaatgc caatcactct
     2761 tattggcgga gtaacaataa ctgttgaaac atttagaagc tgctttccaa aatttggagt
     2821 tctttcacga tcatcaatag ttaagatatg taatcctcct gctttaaaac ctgcaaaacc
     2881 caacaaagat gtcttttcca ttgaagattc tggccatgtt cttatgcgag cctccaaact
     2941 cttggctctg gctcttggcc taaatgcaat gctacctcgc cgaggagcgc tatatttacg
     3001 atgacccatt gataaactaa cacctcaaat tccctttaat aaatttataa ccaaaatttc
     3061 gattacacta gagattctgt tctatgagtt aagtatgtcc ataaacggga tcgcaaaatg
     3121 aagacttgaa agtattcaaa ttttgatttc ttaacaatca aaaaagcaat agatcttagt
     3181 taggtaatta agtcgatca
//
LOCUS       DATABJ010000034         4417 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1115585, whole genome shotgun sequence.
ACCESSION   DATABJ010000034 DATABJ010000000
VERSION     DATABJ010000034.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4417)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4417)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4417
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1115585"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..568
                     /locus_tag="VHF44_00565"
     CDS             <1..568
                     /locus_tag="VHF44_00565"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX2124073.1"
                     /translation="DIVGLSDPSLSVRKQIEKIERLNNLINSCDAFKKITEKKIILPT
                     GDGMAIGFMLNPELPLQLSIQLHKELDRYNHSKKISEEDILGVRIGLATGPVFIVSDI
                     NNNQNIWGPGIILARRVMDLGDSGHILIADILAEQLIALKDEYRVMINPIGNYRIKHG
                     QTIKMYSAYSQDFGNPDPPAKFQVESVN"
     gene            680..1273
                     /locus_tag="VHF44_00570"
     CDS             680..1273
                     /locus_tag="VHF44_00570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124074.1"
                     /translation="MVDKKKSSNRRTNDDSYFARSRRKNKKYMMIIIPIVAAIIAIAV
                     ISAVMYSTQQSSNNNNYGPVGSAHEHAAFAIKINGKQIDFSQPKYQVQSRLIHVEGGD
                     GTTLHRHATGVPFAEFIKSVNMNIEDGCFTLDDGKQYCNNENNKLRFFINGNETESIN
                     NYVINPNDRLLVLYGNENADQINQELAALREAEIRET"
     gene            1785..2648
                     /locus_tag="VHF44_00575"
     CDS             1785..2648
                     /locus_tag="VHF44_00575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0017004 - cytochrome complex assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome c biogenesis protein CcdA"
                     /protein_id="HEX2124075.1"
                     /translation="MDISINTKIVHRLFVVEINVIVSALAGAGSFFSPCILPILPAFI
                     SYLSGTTLHEVQNSNNNNNTITTTTSGGSAAAAAAAAAKQSLTVKRSTRLNIFLNTVY
                     FVLGFSLVFAVLGVILNSVLVTVGIGFQSALQSIGGIVIILFGAYLILSTKLRRLNFE
                     KKMTKLPRFKTSYITSFVFGAAFAAGWTPCVGPILGSTFTLAATAPGAAYNSLLAYSL
                     GLGVPFLITGAFFSQATGLIRRMVKYLKYFNPIMGAVLIILGILVFTNQLALLGNFPL
                     ANQIINLERGF"
     gene            2655..3830
                     /locus_tag="VHF44_00580"
     CDS             2655..3830
                     /locus_tag="VHF44_00580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEX2124076.1"
                     /translation="MNRDNISALIMAIAVVSLITGFAIYFNSPYLNKAASSGQQESNF
                     IPASIESKNGSTISQIDKSQFKKAPDFAKITGYINTEEGRSINLKDLKGKVVLVDFWT
                     YSCINCIRTLPYLVDWNEKYADKGLIIVGVHSPEFEFEKNIDNVKAAVQKYGIKYPVI
                     QDNDKGTWDAYQNRYWPRKYLVDNEGYIRYDHIGEGGYAETEKVIRSLLAERAAQTGI
                     SPINLDTNTNTTTPKNVQTVDFTKVKTPELFFGYEFARAPLGNSEGFKPNQTVTYSVP
                     QRSDLKPNTIYLIGDWKNNADNMELQSDTGRIALAYSAKSVNIVAGGKGEELSISENG
                     VALTNKSGRGIDLSEQGKLVVDGQRLYNIVMHEGYDWRSLIIDVKGKGFQIYTLTFG"
     gene            3843..4124
                     /locus_tag="VHF44_00585"
     CDS             3843..4124
                     /locus_tag="VHF44_00585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124077.1"
                     /translation="MTILMDISAIISLANVSILLALLTVYVKIYKNTRAIFTVGLMFF
                     ASMLMLHNLIAVYAYFAMAPLYAEGLLPYFLGVHIAELAGIGALLKVTL"
BASE COUNT         1560 a          708 c          800 g         1349 t
ORIGIN      
        1 agatatagtg ggtctgtcag atccttcact gtctgttcgt aaacagatag aaaagatcga
       61 gcgactcaac aacctgatca attcttgcga tgctttcaag aagatcacag agaaaaaaat
      121 tattttacca acaggtgacg gaatggctat aggattcatg ttaaatcctg aattaccact
      181 acaacttagt atacaattac ataaagaact cgacagatat aatcatagca aaaagataag
      241 cgaggaagat atacttggag tacgaatcgg attagctaca ggtccagttt ttatagtaag
      301 tgatataaac aataaccaaa acatatgggg accgggtatt atacttgctc gtcgagttat
      361 ggatctagga gatagcgggc atatattaat tgcagatatt ctcgctgaac aattgattgc
      421 tctcaaggat gaatatagag taatgataaa tcctattggt aattatcgaa ttaaacatgg
      481 acagacgatt aaaatgtact ctgcatattc gcaggatttt gggaatcctg atccacctgc
      541 aaaatttcaa gttgaatctg ttaattaata gacgaatagc taatatgtat atatctatat
      601 atatggatat atgtagatat atacatactt tctctttaaa tcaagcctaa aataatggat
      661 atgtataaaa tgataaacaa tggttgataa aaagaaaagc agtaacagaa gaactaatga
      721 cgacagctac tttgcaagaa gtcgtcgaaa gaataaaaaa tatatgatga ttataattcc
      781 aattgtagca gcaattattg caatagcggt aatttctgct gttatgtatt caacacagca
      841 gtctagcaac aacaacaatt atggtccagt tggttcggct catgaacacg cagcttttgc
      901 aataaaaatc aatggaaaac agattgattt tagtcaacca aaataccaag tacaatctag
      961 gttgatacat gtcgagggag gtgatggaac tacattacat aggcatgcaa caggcgtccc
     1021 atttgccgag tttataaaaa gtgtcaatat gaatattgag gatggatgct ttacattaga
     1081 tgatggaaaa cagtattgca ataatgaaaa caataaactt agattcttca taaatggaaa
     1141 tgagacagag tcaatcaaca attatgtaat taaccctaac gatagattat tggttcttta
     1201 tggcaatgaa aatgctgatc agataaacca agaacttgct gctttgcgag aggctgagat
     1261 tagagaaact taggaggcag tttttattgc ttccttgtat atatcttcat ttcatttgat
     1321 tttattagct tcacatataa atgatgattt aataaagaac aatggaatat cagataataa
     1381 tacaacagaa atactgatcg aacatttatg tatattcaaa cacaatgaaa gcttttgatt
     1441 ttataagaga agagctttag aaattgttat cttgctctga cattatgcct atgctatgat
     1501 gtatgctatg atgtagcaat aaataattct tctgggcaga ttacaaatca gggaaaactc
     1561 tccaaagtag tgagcttgaa gttttcaagc accctagact ttcaattggg actgcaaaag
     1621 atagacagca aacaattagt agctttttct aaaaggagct tgtcaagtca aatgtaagca
     1681 ttatttctgc aataatccat cacagatgat agtatatgca ataactatgc gtgtccttct
     1741 atgtaacaag tcaaaaagta atttggatgt aatacggaca caatatggac ataagtatta
     1801 atacaaaaat tgtgcacaga ctattcgtgg tagaaataaa cgttatagtt tctgcactag
     1861 caggagcagg ttctttcttt tctccttgta ttcttccaat acttccagca tttatatcgt
     1921 atttgtcagg aacaactctc catgaagttc agaacagcaa taataataat aatacaatta
     1981 ctactactac cagcggagga tcggcagcag cagcagcagc agccgcagca aaacaatcgc
     2041 taaccgtcaa gaggtcaacc agacttaaca ttttcttaaa tactgtttac tttgttcttg
     2101 gtttttcact tgtatttgca gtattaggag ttattctaaa tagcgttctt gtcacagtag
     2161 gaattggctt ccaaagtgcg ctccaatcaa ttggaggaat agtaattata ttatttggcg
     2221 catatctaat tttatctaca aaattaagga gactgaactt tgagaaaaag atgacaaagt
     2281 tacccagatt taaaacaagc tatattacat catttgtttt tggagctgca tttgcagctg
     2341 gctggactcc ttgtgtaggt ccaattctag gtagcacatt tacattagca gctactgcgc
     2401 ctggggctgc atacaattcg ctattagctt actctttagg cttgggcgta ccatttctaa
     2461 ttactggtgc tttcttctca caagctacag gtttaatcag aagaatggta aaatacctaa
     2521 aatatttcaa tcccataatg ggtgcagtgc tgataatatt gggtatacta gtattcacta
     2581 atcaactggc tttactaggc aattttcctc tagctaatca aattattaat ttagagagag
     2641 gtttttgatt tataatgaat agagataata tcagtgcgtt aattatggca attgcagtag
     2701 tctcccttat tactggcttt gcaatatact ttaacagccc atatcttaat aaagcggcat
     2761 catctggaca acaggaatca aattttattc cagcatcaat agaaagcaaa aatggaagta
     2821 ccatatctca gattgacaaa tcccaattca aaaaggcacc tgattttgcc aaaattacag
     2881 gttacataaa cacagaagaa ggacgatcaa taaaccttaa agatctaaag ggaaaagttg
     2941 tactagttga cttttggaca tacagctgca ttaactgcat acgtactctt ccatatctag
     3001 tagattggaa tgaaaaatat gctgataagg ggttgataat agttggtgtt cattcgcctg
     3061 aatttgaatt tgagaaaaac attgacaatg taaaggcagc tgtacaaaaa tatggaataa
     3121 agtatccagt catacaagat aatgacaaag gaacttggga tgcctatcag aatagatact
     3181 ggccaagaaa atatctagtt gataatgaag gatacataag atatgatcat ataggtgaag
     3241 gtggttatgc tgaaactgaa aaggtaattc gatcattact tgctgaacgt gctgctcaaa
     3301 caggtatatc tccaataaat ctagacacaa atacaaacac aactacacct aaaaatgttc
     3361 agactgtaga tttcacaaaa gtaaagacgc ctgaactctt ctttggatac gagtttgcta
     3421 gagcgcccct tggaaattct gaaggcttca aaccaaatca aactgtaaca tactctgtcc
     3481 cccagcgttc tgatcttaaa ccaaacacca tatatcttat tggtgactgg aaaaataacg
     3541 cagataatat ggaattgcaa agcgatactg gtcgtattgc attagcttac tctgcaaagt
     3601 cagtaaacat agtagcagga ggaaaaggag aagaactttc aatctctgaa aatggagtag
     3661 cgctaacaaa taaatcagga agaggaatag acctatcaga acaaggtaaa ttagtagtag
     3721 atggacagag attatacaac atagttatgc atgaaggata tgactggcgc tcacttataa
     3781 tagacgtaaa gggcaaaggc ttccagatat atacacttac ctttggttag ttgtcatctg
     3841 ccatgactat cttgatggat attagtgcaa taataagtct ggcaaatgta tctatcttgc
     3901 tagctttatt gacagtatat gtaaaaatct acaagaatac tagagcaatt ttcaccgttg
     3961 gcctcatgtt ctttgcaagc atgctaatgt tacataattt aattgcagtc tatgcttatt
     4021 ttgcgatggc tcccttatac gcagaaggat tactaccata ttttttagga gtgcatatag
     4081 cagaacttgc aggaatagga gctttgctga aagttactct ttaaagttgt ttatatcatt
     4141 ttagattaaa atagatcttt tatttttatg gttatattat tagtgtataa aataatttgg
     4201 aatagacaga tgttctttct gatataatga tcacttattt tattgagaga aactaacgtt
     4261 taataattac atagaaaata acttcttgca aattggtagt gtattgggca aataaacatt
     4321 ttgctctaac tgaatttgta accaatcatt ttatattcca tagatggatt aatatatttg
     4381 tgattaaagt acaaacttat ttcttgtcta ataacat
//
LOCUS       DATABJ010000035         2633 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1773262, whole genome shotgun sequence.
ACCESSION   DATABJ010000035 DATABJ010000000
VERSION     DATABJ010000035.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2633
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1773262"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..559)
                     /locus_tag="VHF44_00590"
     CDS             complement(<1..559)
                     /locus_tag="VHF44_00590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-binding protein"
                     /protein_id="HEX2124078.1"
                     /translation="MPKFKSTQDILRIIGNKEQIRNFGVIAHVDHGKTTMSDSLLAAS
                     GIISPSVAGQALALDSMKLEQNRQMTIRGANVTLFYENEGKEYVINMIDTPGHIDFTG
                     RVTRALRAIDGVVVVSDSVEGIMTQTETVTRQALEERVRPVLYINKIDRLVKELRLDP
                     PAMQKWLSNIIAEFNRLVDIYAEPEL"
     gene            complement(719..1156)
                     /locus_tag="VHF44_00595"
     CDS             complement(719..1156)
                     /locus_tag="VHF44_00595"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124079.1"
                     /translation="MPYTLLFGNNFITNSPQSVKMANEVLFSLGEDSEGPYLTTSILD
                     SNGNTLIIIEKNNCIFYNKEFIKKNQRDHVLLENRKGQIMLESRVLDKQMILVSGIFS
                     FKDFVLTATQNYLILPNGQRMMHNRTMANKSSVTITEFGIKSE"
     gene            1300..2127
                     /locus_tag="VHF44_00600"
     CDS             1300..2127
                     /locus_tag="VHF44_00600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MqnA/MqnD/SBP family protein"
                     /protein_id="HEX2124080.1"
                     /translation="MMEITLGHTPDADDAFMFFGIACGKVSSVDIKIKHVIEDIETLN
                     KHALRHDLDVTAISAHAYAYLKDYVILRSGGSFGLNYGPIVISKRKLTLSELRKGIIG
                     IPGKMTSANLLLNLALGEFNGMEMPFQLIPEAVLNDKVDAGLVIHEAQITYDTSRLHT
                     VFDLATWWTAKTKGLPMPLGINVASNKSMTLEQIKMFDKLFKESILYGLEHIESAVDY
                     AMKYGRGQPRDVITRFIKMYVNDVTIDMGTIGEKSIKKMFAIAEEKGFLSFSKLNFA"
BASE COUNT          876 a          421 c          441 g          895 t
ORIGIN      
        1 taagctctgg ttcggcataa atatcaacta gtctgttaaa ttctgcgata atgtttgaaa
       61 gccatttttg catagctggt ggatctaatc ttaattcctt tactagtctg tcaattttgt
      121 taatataaag aactggtcta actcgttctt caagcgcttg tcttgttact gtttctgtct
      181 gagtcataat gccttcaaca gaatcagaaa ctactacaac accatcaatt gctcttaggg
      241 cacgagtgac tcttcctgta aagtcaatgt gaccaggtgt atcaatcata ttaattacgt
      301 attccttgcc ttcattttca taaaatagtg taacgttagc tccacgaata gtcatttgtc
      361 tattctgttc aagtttcata gaatcaagcg ccaaagcttg gcctgcaaca gagggagaga
      421 taatgcctga agcagctaaa agactatcac tcatagttgt cttgccgtga tccacatggg
      481 caatgactcc gaaattacga atctgttcct tattaccaat aatccttaga atatcctgag
      541 ttgatttgaa ctttggcata tatattcaag caaaaaattt gctggaggac tattaaacgt
      601 tccttacatt caaaattaaa aattttattg ttttacataa tacaagcgag catatacact
      661 taatatttaa ttaatcctga gagcatattt ctgttagaat ttatggtttc tcgctcgctc
      721 attctgattt tattccaaat tctgtaatcg ttaccgaact cttatttgcc atagtcctat
      781 tatgcatcat ccgttgtcca tttggcaaaa taagataatt ctgtgttgca gtcaatacaa
      841 aatccttgaa agagaagatg ccacttacta aaatcatctg cttatccagc accctagatt
      901 caagcatgat ttgtcctttt ctattctcta gcaaaacatg gtcacgttga ttttttttaa
      961 taaattcttt attatagaat atgcagttat ttttctcaat aatgattaac gtatttccat
     1021 ttgaatcaag aatcgatgtt gttaaatatg gtccctcact atcctcgccc agcgaaaaca
     1081 aaacttcatt ggccatcttt actgattgag ggctatttgt gataaaatta tttccaaata
     1141 gaagagtata aggcaaatgg atcattattt tatataatgt ttcattaatt attctttgtg
     1201 tgtagcaagg taatatgtta agttgattga tgcccgagat tacctaaatt atacttggtt
     1261 tttatagaga aaatattagt ctatttctgt agataatata tgatggaaat aactctaggc
     1321 catacccctg atgctgatga tgcatttatg ttctttggca ttgcatgcgg taaagtatct
     1381 tctgtggata tcaaaatcaa acatgtcata gaagacattg aaaccctcaa caaacatgct
     1441 ttaagacatg atcttgatgt tacagctatt tccgcgcatg cctatgctta tttgaaggat
     1501 tatgtaatat tacgtagtgg cggaagtttt ggcttaaatt atggtcctat agtcatttct
     1561 aaaaggaaat taacattatc tgaattaaga aagggcataa ttggtattcc aggtaagatg
     1621 acatctgcta atttattgct aaatcttgcc ttaggagaat ttaatggaat ggagatgccc
     1681 tttcaattga ttcctgaagc cgttctaaat gataaagtag atgcaggttt ggtgattcat
     1741 gaagcacaga taacatatga cacttcaaga cttcataccg tttttgattt ggcgacttgg
     1801 tggactgcaa aaacgaaggg attgccaatg ccattgggta taaacgtagc aagtaataaa
     1861 tcaatgacat tagaacagat aaagatgttt gataagctat tcaaggaatc gattctttat
     1921 ggccttgaac acattgaatc agcagtagat tatgcaatga aatatggaag aggacaacca
     1981 cgtgatgtga taaccagatt tatcaaaatg tatgtaaatg atgtaactat agatatggga
     2041 accatcgggg aaaagtcaat aaaaaaaatg tttgcaatag ctgaagagaa gggattctta
     2101 tcgttttcta aactgaattt tgcttaattc tacttttacc cataataata taaatcaagt
     2161 aagaattcat tatgatttat atattccgtg ccatttcttt gaactttcct tcgacgtatg
     2221 gttcgataag taaaggtaaa ggcatacgaa ttttattaca attggatagc gaaagtgaat
     2281 tctatgactt atagagtgac aatgcgaatg ttgactactt ctaattccaa tctttatgct
     2341 agaagtacta ctaactcatc atatgattag attcttataa taagagaaga atactggcta
     2401 tatattatat atctgcatca aagcaaaaat actcaaaaat atgaaagtaa aagagaatta
     2461 atgataaagt gaatatatgt aacccctaat gacaaagata gaataagtcg ttatatgtta
     2521 aaatccaaaa gccactattg gtttggttaa taatttctaa aagaaaaagg aattaatatg
     2581 tatgtatgta tatatatata catacataca tattaattcc tttttctttt aga
//
LOCUS       DATABJ010000036         1799 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1339166, whole genome shotgun sequence.
ACCESSION   DATABJ010000036 DATABJ010000000
VERSION     DATABJ010000036.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1799)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1799)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1799
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1339166"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(319..1380)
                     /locus_tag="VHF44_00605"
     CDS             complement(319..1380)
                     /locus_tag="VHF44_00605"
                     /inference="COORDINATES: protein motif:HMM:NF013832.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124081.1"
                     /translation="MAENNLPTMLLWLAELIVASWILSYGAEHLSKKYGGKFVGRTLL
                     SVATTLPEIAIVVYAAAAGSYGVAIGAGLGSNLLMMTLGLSIMLLIATTRLSKAPLKG
                     VDVSTFKLDKIFLVITAIVSALLFIDGYNYIDGIVFTLMFVAYLVMALYEMKAEKSKI
                     KPQELLHNIGDHEIVEVKEEHKSNKGFDRQMLKAYLAFLAGTIGILLGAEPFIHSLEG
                     FSIEVGISAVILAVIISPIAGEMPEKVSMMILARKGAAGAAIAVANVLGSKILNNTLL
                     LAVAVFGAMYHGGFFASIDLSNILTYQVVLVTSVTLIALIPMFKKEIGLKVGIMLFSM
                     YIISLFIQFLLPQEINETH"
     gene            1569..1694
                     /locus_tag="VHF44_00610"
     CDS             1569..1694
                     /locus_tag="VHF44_00610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124082.1"
                     /translation="MPSNTSAVGVEVNMINSAGTAAHTIMVRIISTTAVIFSAII"
BASE COUNT          592 a          346 c          295 g          566 t
ORIGIN      
        1 acaaacatag agaacaaatg aatttcatct gcttagaatt aatctagaac ccttaataca
       61 acaattttta tcaataatta ttcaaaataa tattgtcaaa agtaaatctc aagcatggat
      121 aattgtcctt gaacatcaac attcttcatc gacaggttac attattcttc cttcttataa
      181 tgtctgtgaa tgcttttgat taacattatc ggttatctta ccctgagtta gagaaaccag
      241 tgcaataaca agtctttttt ataatggcta attgaaacag gactatttct tccaagaaga
      301 atggtactta tttctttgtt aatgtgtctc attaatctcc tgaggtagaa gaaactgtat
      361 aaatagacta ataatgtaca tactgaataa cataatcccg actttaagac caatttcttt
      421 tttgaacatg ggtatcaatg ctattaatgt tactgatgtt acaagtacaa cttgatacgt
      481 tagaatatta ctcaaatcta ttgatgcgaa aaagccgccg tgatacattg ctccaaatac
      541 ggcgacagct aagagtagag tattgttcaa tatcttcgat cctaagacat ttgctacagc
      601 tatagctgca cctgcagcgc ccttcctagc caaaatcatc atggaaactt tttcaggcat
      661 ctctccagct attggactaa tgatgaccgc cagtataact gcagaaattc cgacctctat
      721 cgaaaatcct tctaatgaat gaataaaagg ttcagctcca agcaagatgc cgattgttcc
      781 tgctagaaat gctaaatatg cttttaacat ttgcctgtcg aatcctttat ttgacttgtg
      841 ttcttcttta acttccacaa tctcatggtc gccgatgtta tgaagcaact cctgcggctt
      901 tatttttgat ttttctgctt tcatttcata taaagccatt actagatagg cgacaaacat
      961 aagagtaaaa acaattccgt caatatagtt atagccgtct atgaacaaga gagcgcttac
     1021 tatagccgtg atgacaagaa atattttatc caatttgaat gtgctcacat ctacgccctt
     1081 cagcggggct tttgaaaggc gggtagttgc aataagcaac attatagata atcccaaagt
     1141 catcatcaaa agattgctgc ctagtcctgc acctatggca acaccgtagg atcctgcagc
     1201 ggccgcataa acgactatcg ctatctctgg aagcgtggta gccacactaa gaagtgtcct
     1261 accaacaaat tttcctccat atttttttga aaggtgctct gcgccataag agaggatcca
     1321 actagccact attaattctg cgagccagag taacatggta ggcagattat tttcagccaa
     1381 ggatgaattt atccttcgaa aggacaatat aaatcacagt atattattca aaatcaaagg
     1441 actattataa taaaagcaaa taaaaaaagt tacgtcgttg cggttactca cattatagaa
     1501 aatatatttt tctgcattaa agattaattg ccaaatggta aaatactaat tggttgctca
     1561 aatcttcgat gccaagcaat acttccgcag taggtgttga agttaatatg atcaatagtg
     1621 cagggacagc agcacatact atcatggtga gaattataag cacaactgca gtcatctttt
     1681 ctgccataat ctagaaactt cgaattggtt atataaattt taaatatatc tcttactatt
     1741 tgctatttac tttagcgatt tttgtttact ttgagcaata caataggatt agaaggaca
//
LOCUS       DATABJ010000037         3601 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1556688, whole genome shotgun sequence.
ACCESSION   DATABJ010000037 DATABJ010000000
VERSION     DATABJ010000037.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3601
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1556688"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            398..1588
                     /gene="radA"
                     /locus_tag="VHF44_00615"
     CDS             398..1588
                     /gene="radA"
                     /locus_tag="VHF44_00615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair and recombination protein RadA"
                     /protein_id="HEX2124083.1"
                     /translation="MLENDDFLYLPPFMVRFDINRSTYYQVMKMVDRKASMENESNNN
                     IVQKNDTNTISEISSPIIDLEIQDIEGIGPTTAKKLKEAGIISVMDLAVASSDELAVD
                     LNSSKDSAASFIMAAQKLLRDSNVLEKEFVTADAALEKRKSMLRCSTGSIALDDLLLG
                     GIETQAVTEFYGEFGSGKSQICHTLCATARQPIAVGGLDGGVIYIDTEGTFRPERVEQ
                     IARARGFDPSQILKSVAVCKIYNSSHLELIIKDLGKYINDFKAKLVVIDSIISLHRAE
                     FAGRGTLADRQQRLNNMLHKLVRLTEIYNIAIVITNQVQSSPDTFFGDPTKAAGGNVL
                     GHASTYRIYLRKSGENRVAKMIDSPYHPYSETRFTVNEKGTDDIEEQIKKGGRKLAKD
                     EDEN"
     gene            2299..2607
                     /locus_tag="VHF44_00620"
     CDS             2299..2607
                     /locus_tag="VHF44_00620"
                     /EC_number="4.2.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008124 -
                     4-alpha-hydroxytetrahydrobiopterin dehydratase activity
                     [Evidence IEA];
                     GO_process: GO:0006729 - tetrahydrobiopterin biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="4a-hydroxytetrahydrobiopterin dehydratase"
                     /protein_id="HEX2124084.1"
                     /translation="MSEDEYKKLSDEEIKRELNKNPDWMVENGKLNRTLEFDNFVQAF
                     GFMTEVAIEAEKINHHPEWFNVYNRIKIDLVTHDVKGISNYDFKLATIINTLYNRIRH
                     "
     gene            2806..3177
                     /locus_tag="VHF44_00625"
     CDS             2806..3177
                     /locus_tag="VHF44_00625"
                     /inference="COORDINATES: protein motif:HMM:NF042555.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6659 family protein"
                     /protein_id="HEX2124085.1"
                     /translation="MSMDFAKLCEEVFALHDDIRYAGIIDDTGTLIAGGLRKGLDSMT
                     EQDNDELYLAQTAIRKSMRQRFDNTMGKARFAYVEREKISMLTFYMDKNILVVSIEPN
                     VDPHTVMDIAIDTLELLNGRI"
BASE COUNT         1279 a          550 c          655 g         1117 t
ORIGIN      
        1 ttgataataa gtactcctat taatatcgaa acataccatg aagggaggga ggtagagaaa
       61 gtcatcattc tccagcattt attgtattta gctagtgcat ccaatggcta aagagttata
      121 atataacaaa gtgactttaa tctgcttctg atcatcgtct ttgcgatatg caaaaaaaga
      181 tccatagttt tctattcttc aagaccttcc ctgataatat ttttcaggaa gatgcagcaa
      241 attaactata ttatagaatt agcattaagt tattgaataa cattgtatgc ggattgtatt
      301 tttgcatatc gcaagacaat gatcagaagc agattaatgt caatttatta tattatactg
      361 tttagccatt ggatgcatta gatgagttat acaataaatg ctggagaatg atgactttct
      421 ctacctccct cccttcatgg tacgtttcga tattaatagg agtacttatt atcaagtcat
      481 gaagatggta gatcgaaaag catctatgga aaacgaatct aataataaca ttgtccaaaa
      541 gaatgataca aataccatat ctgaaatttc atcacctatt attgatttag aaatccaaga
      601 tatagaaggc attggtccta cgacggccaa gaaactcaaa gaggctggta ttatatcagt
      661 aatggatctt gcagtagcaa gttcagacga actggctgta gaccttaatt cttcgaagga
      721 tagcgctgca tcatttataa tggcagcaca gaagcttttg agagattcta atgttctaga
      781 aaaagagttt gtcacagccg acgccgctct tgaaaaaagg aaatctatgc tacgatgttc
      841 cactggatct atagctcttg acgatctttt gcttggaggc atagagacac aagctgttac
      901 tgagttttat ggtgagttcg gttctggtaa atcacagata tgtcatacat tatgtgcaac
      961 agcgagacag ccaattgcag taggaggact tgatggtggc gtaatataca tcgatactga
     1021 gggtacattc agacctgaga gagtagagca aatagctaga gcaagaggat tcgatccttc
     1081 tcagatattg aaaagtgtgg ctgtatgcaa aatctataac agctcacatc tggaactaat
     1141 aataaaagat cttggtaaat atatcaatga ttttaaagca aaacttgtcg taattgatag
     1201 tataatttct cttcacagag cagaatttgc tggaagaggt acattggctg atagacaaca
     1261 gagactcaat aatatgctgc acaaactcgt aagactcaca gagatttaca acattgcaat
     1321 agttataaca aatcaagtgc aatcttctcc agatactttc tttggagatc caacaaaagc
     1381 agctggagga aatgtattag gacatgcctc aacctataga atttatctta gaaaatctgg
     1441 agagaacaga gttgcaaaga tgatagactc tccatatcac ccctactcag aaacaagatt
     1501 tactgtaaac gaaaagggaa cagatgatat agaagagcaa ataaaaaagg gcggaagaaa
     1561 attagcaaaa gacgaagatg aaaactaact gacctactta atttgtcgaa tagctcgcga
     1621 aggttaatct caagtagatg agattgaatg aacgcatcat caattttatt tatactactt
     1681 gtgattaata tttgttataa tatattcata aatccacaat gcaaaattaa aattcgaacc
     1741 tcctgttgta ataattattg ttgttgtatt gtttcttcta aattcttcta aattgcattc
     1801 tatcttttat gttaatgatc atagtagtat agtaaaacac caaagttaag agcagatgta
     1861 ttttaagata actaatggat attgatacta gtatatgtat tacatttgca aaaaccatag
     1921 gtagtgacat ccagtcctga ctcatgtctt tactccagcg tcattcgcta tcgcagcatt
     1981 ttgtttgtaa atgagatgga tgtcatctgt tagttgcaac ccattgatcc ataattatgt
     2041 catatctgac aagatgcgtt aagaataaag tcccgtactt tgctaggagg aggacagcag
     2101 attagttatt agaaattaag tcagaaattc ctacctatta attattatat taataaaaaa
     2161 tttgaatctt ctcaactaag taatatatat aggatatcgt catcagaaac ttcctctact
     2221 tcatattttg taaaccaaaa gagagaggtg aggacattaa tcatccgcct tttatatgag
     2281 agagcgtatg aatagaacat gtctgaagat gaatacaaga agttatctga cgaggaaatc
     2341 aaaagggagc ttaataaaaa tcctgattgg atggtcgaaa atggcaaatt gaacaggaca
     2401 ctggaatttg ataactttgt tcaggcattt ggttttatga cagaagtggc tatcgaggct
     2461 gaaaaaatta atcatcatcc agaatggttc aacgtttata atcgtataaa aattgacttg
     2521 gtaacacacg atgtgaaggg aataagcaat tatgatttta aattagcaac cataatcaat
     2581 acactctata atagaatacg tcattaattt tataaatatt tcaatagaat aagaaaagct
     2641 tctattctcc tagacttctt aactaaagca atcacaaaaa atatgttata aaaggattag
     2701 agatatattg ttgcaaaata cctgaactat gatgctaacg caaagacatg ctcagatgca
     2761 ataagacaaa aaaaactatt cctttatatg ttaaaatttt cttacatgag tatggatttt
     2821 gcaaagctat gcgaagaggt cttcgcatta catgatgata tccgttatgc tggtatcata
     2881 gatgacaccg gtacgttaat tgctggaggc ttgcgtaaag gtcttgattc catgacagaa
     2941 caggataatg atgaattgta tctggcacag acggctattc gaaaatcaat gagacagaga
     3001 tttgataata caatgggaaa agcacgattt gcatatgtag aacgtgaaaa gatttcgatg
     3061 ttgacattct atatggataa aaatatacta gttgtatcga tagaaccaaa cgttgatcct
     3121 catacagtca tggatattgc aatagataca cttgaactat tgaatggaag aatctaaatt
     3181 cttttaatta taacaactgt atgtaagcat tcttcttata aacaattgat gaattcaaag
     3241 tacttgtttg gagcaattga gatctttcga taatagtata gcgattgctc ttcttaagga
     3301 gttggagact atactagtca ttatgacaga taaaacaaga tgttttttat gttcttgatt
     3361 accgtgagga cttgccatac gtattatttt cagattgtac ctatatcttt gaaattaaat
     3421 ggtcatggat actgaattag atcattgcta gatattgtct atatgagata tccattaaat
     3481 ctaaaacatt ttgagatgtt ttattaatga aaatctttag catttcttag atcatgtaat
     3541 atctgatgtc taaattagat attacctggc aaacaaatta ctgaacagat aatatggcgg
     3601 c
//
LOCUS       DATABJ010000038         6021 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1122960, whole genome shotgun sequence.
ACCESSION   DATABJ010000038 DATABJ010000000
VERSION     DATABJ010000038.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6021
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1122960"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            66..1403
                     /locus_tag="VHF44_00630"
     CDS             66..1403
                     /locus_tag="VHF44_00630"
                     /EC_number="2.1.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004372 - glycine hydroxymethyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0019264 - glycine biosynthetic process from
                     serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEX2124086.1"
                     /translation="MSAKTSYDKVIQLMKEHHKWFNKSIPLIASENIPSAAVREAIIS
                     DFGNRYAEGWPGERVYAGCTYIDQVEIICNDLAKRVFRAEFADCRATSGVVANLAIYA
                     AFSNPGDYMMAASIPSGGHISHGKKEHFGTAGLVHGLYIEHYPFSKEEMTIDVDATKK
                     KIQDMMYEGKSPKIGMFGGSLFLFPHPVKELADFMHDHNIYVNYDGAHVAGLIAGGEF
                     QDPLKEGADSMTMSSHKTLWGPQGGIIVSVEKYSEAIKKAIFPGNTSSHHLHHVAGKA
                     IALAESLEFGKEYAKQVIRNAKALAEALAEFGFGVLGEKRGYTASHQIAVDVSMFDDG
                     GTVEKDLEKANIILNRQLLPGDIKAGRHYMHPSGVRIGVPETTRLGMKESEMKEIANF
                     IKRVIVERQDPAIVRNDVADFRKQFQKVHYAFDNAVGAYEYISLIGDDKKMVQ"
     gene            complement(1729..1995)
                     /locus_tag="VHF44_00635"
     CDS             complement(1729..1995)
                     /locus_tag="VHF44_00635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124087.1"
                     /translation="MSKEQIDVTIQISKYIIDYLEKNKPDEHAVIIALIGVYFGSVEA
                     VVRDYRKNGLSENDINIFIDDSLKLLEESKQKIMELKEKKIRNE"
     gene            complement(2255..2977)
                     /locus_tag="VHF44_00640"
     CDS             complement(2255..2977)
                     /locus_tag="VHF44_00640"
                     /inference="COORDINATES: protein motif:HMM:NF017808.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEX2124088.1"
                     /translation="MKKKNNIVTIAIAAISIAIIVSGSFVSLASSQSEKPLPVLLIHG
                     YAEDAAIWKKWEDLLKKDGIQFFTITFKDSDDKCGSAEQHAKELEKRVQDVKQQSGAQ
                     KINIVGHSKGGLDARVFLDITDTKDVANLIMIGTPNAGSPAAETNNACAPAIFDLRPG
                     ANATRAEMNPNTKYYTITGDWLPAVQGNLAIPGHDDGLVPVESVESEGYFQSLGRTEH
                     AHAELLQEQEYNMAKDVLLGKR"
     gene            3123..3800
                     /locus_tag="VHF44_00645"
     CDS             3123..3800
                     /locus_tag="VHF44_00645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124089.1"
                     /translation="MKEKPHMINNKLMASILLALVIITFDPVSLITYAESQAPNTTSI
                     TIEDRIGMIMGNRITKMMDDTINMIKNVNSTAIVNQSENGITPVTNLTDVDVNKTEIR
                     STNELEKLAGNNIALTVDDISTDISNASMLEELEKSRTENATMDKQDTAAVFEGQNIS
                     STVNTTENTSYIDQKIINDNTRTNTTLYADNKTLATTTDKPTSSNNIGNFFTQIGESV
                     KKFFGGN"
     gene            complement(3829..6009)
                     /gene="polC"
                     /locus_tag="VHF44_00650"
     CDS             complement(3829..6009)
                     /gene="polC"
                     /locus_tag="VHF44_00650"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_function: GO:0004527 - exonuclease activity [Evidence
                     IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II large subunit"
                     /protein_id="HEX2124090.1"
                     /translation="MIQLTKDPFTIFPTVEDAFEISKKFDIPLHPKYSFYWDSLSIDE
                     VLLLKEKFCIQKQQNTSIRNNNNSNNNISSDTYLLSFDNDPKIKDILERLGVIHSVKS
                     GDNTIEINSQDQSYSLTRLLLLSSQSAAVGNTDITKGMSFSSSHAAANSIEKKDTSEY
                     ISITSGVEVRPKFASSVAVRVGRPEKAAERKMKPPVHVLFPIGSKGGATRDILKAANN
                     ESFYTEISNRFCNNCRLPSLGIHCRNCSAPTPLRNLCILCKEQILDDADNSLCHRCGK
                     EGKTYSPVKYPLKTTVEAAEQKLGIKATEPFKGVKALMSRDKATEPLEKGILRQKYSL
                     YTFKDGTIRFDATNEPLTHFKPNWIQTSIEKLRELGYTRDYSGKDLTSSDQLIELLMQ
                     DVIIPLDSAKHLLNVAKFVDEELVKLYGLEPFYNASSVEDLVGHLTVGLAPHTSVGIM
                     GRIIGFTNSQVCLASPVWHSAKRRDCDGDADSLMLLMDSFLNFSYNFLPDKIGGLMDA
                     PLLIQPIVLPYEVQRQAHNIDITSVYPLEFYEATWKQAKAGDLSDKIELVKNRIGNES
                     QFFDYAFTHFTGLLTTNIQRSAYSRLNTMNEKLEMQIATAKLINAVDPDEVVSMVLTT
                     HILPDIMGNMRSYSSQGFRCSNCGEKYRRMPLIGRCIGCGNELLQTVTRGSVEKYVGI
                     ATNMCDQFKISDYLRSRIETLTMELKLIFKEQKKEQSTLTEFMG"
BASE COUNT         1959 a         1066 c         1064 g         1932 t
ORIGIN      
        1 tcacaaatga tatctagtca tgcaatattt taaattagac aggaaaggca agattatgaa
       61 tctaaatgag tgctaaaaca tcctatgata aagtcataca actaatgaaa gaacatcata
      121 aatggtttaa taaatcaatt cctctaattg caagtgaaaa cataccaagc gcggcggtaa
      181 gagaagcaat aatatcagac tttggtaata gatatgctga aggatggccc ggcgagagag
      241 tttacgctgg ctgtacttat atagatcagg ttgagatcat ttgtaatgat ttagcgaaaa
      301 gggtttttag ggcagaattt gcagattgta gggcaacatc aggtgtcgtt gcaaatctag
      361 caatttatgc tgcattctca aatccaggcg actatatgat ggctgcttct attccaagcg
      421 gaggacatat ttcccatgga aagaaggagc attttggtac tgcaggtctt gtacatggat
      481 tgtatattga acactatccc ttttcaaaag aagaaatgac aatagatgtg gatgcaacaa
      541 aaaagaagat ccaggatatg atgtatgaag gaaaatcacc aaagatagga atgtttggag
      601 gcagtttgtt tctttttcct catcctgtaa aagaactggc agattttatg catgatcaca
      661 acatttatgt aaattatgac ggggcacatg ttgcaggcct gattgcagga ggagaatttc
      721 aagatccatt aaaagaagga gcagactcca tgaccatgag ctcacataaa actctctggg
      781 gaccacaggg aggaatcatt gtatcagtgg aaaaatactc agaagcaatc aaaaaagcaa
      841 tctttcctgg caacactagc agtcatcatc tacatcatgt tgcaggcaag gctattgcat
      901 tagcagagtc attagagttt ggaaaagaat atgcaaaaca agtgatcaga aatgcaaagg
      961 cactagctga agccttggct gaatttggat ttggagtgct aggtgaaaaa agaggatata
     1021 ctgcatcaca tcaaattgca gttgatgttt caatgttcga tgacgggggt accgtcgaga
     1081 aggatctaga aaaggcgaat ataattttaa acagacaatt gctaccagga gacatcaagg
     1141 caggtaggca ctatatgcat ccgagcggag ttagaatagg tgttcctgaa acaactagac
     1201 ttggcatgaa agaaagtgaa atgaaagaga ttgcaaattt cataaaacgt gtgattgtag
     1261 agagacagga tcctgctatt gtaagaaatg atgttgctga ctttaggaaa caattccaaa
     1321 aagtacacta tgcgtttgac aacgctgtcg gtgcatatga atatataagc cttattggtg
     1381 atgataaaaa aatggtacag taaagcaaag gcgaaagtgg cattattgat ttaaaagtcg
     1441 tgcttaactt tgctttttca tgctcctata ggttggagcg cacatgaaca ttcgatcagc
     1501 aattgttgtt aatatcctta gactcaattt aaaatatcga aaaaataata ttttgataca
     1561 aattctctac tagatcagat actagaaagt ataaaagaca tttgatgaca taccaaactc
     1621 cactggttta tcatactgct gctctactac tagagcctct taatcatatc aatatataaa
     1681 agaaaaacag ccattactat cttaattttt atttatttat ttatttgttc attcatttct
     1741 aattttcttt tcttttagtt ccattatttt ttgttttgat tcctctaaga gtttaagtga
     1801 atcatcaata aatatattaa tatcattttc actcaaacca ttcttgcgat aatctctaac
     1861 tactgcctct actgacccaa aatatactcc aataagagca ataatgacag catgttcgtc
     1921 tggtttattc ttttccagat aatcaataat atattttgat atttgtattg ttacatcgat
     1981 ttgttctttg ctcattgtta ttttccctgc taacaggatg tgcaatggat aattaaacta
     2041 acgtattcac ttccctgtca acaatgtcaa caataacaaa tctacagatc tgtaaataga
     2101 aatacagcag atcacacata aaagaggaca tattcacttt gtaattattt tccactcagt
     2161 caaatgtcta tcgagacata attgtgtaga aacccaaaaa ataaaataag agaatttttt
     2221 atttgatcat atccttactg cctcagaagt ctatctatct tttcccaagt aatacatcct
     2281 tcgccatatt atattcctgt tcttgtaata gttctgcatg tgcatgttct gtgcgaccca
     2341 gactttggaa gtaaccttct gattcaacac tttctacagg tactaaacca tcgtcatgtc
     2401 ctggaatagc taggtttcct tgtactgcag gtaaccagtc accagtaatc gtatagtatt
     2461 tggtatttgg gttcatttct gctctagttg catttgctcc aggtcttaaa tcaaatatag
     2521 ctggtgcaca ggcattattt gtctctgctg ctggagaacc ggcgttagga gttccaatca
     2581 ttataagatt tgcaacatcc tttgtatcag taatatctaa gaatactcta gcatcgagtc
     2641 cacctttact atggcctaca atgtttatct tttgagcgcc tgattgctgc tttacatctt
     2701 gtaccctttt ctctaattct ttggcgtgtt gttctgctga tccacattta tcgtcagagt
     2761 ctttgaaggt tattgtaaag aattggatac catctttttt gagcaaatct tcccattttt
     2821 tccatatcgc ggcatcctca gcataaccat gtattaatag tactggaagt ggcttttcag
     2881 attgactact tgctaaggaa acaaatgagc cacttactat tattgctatg gatatagcag
     2941 ctatggcgat tgtgactata ttattttttt tcttcatctt attgatagtg gttagaaaga
     3001 tttatcaaag ttatttttaa ataacagcat tctaaaaggg agtttatatt cttcaccaac
     3061 tgtatagttt gcagtcgtta acaccttagg atgaacaaat gaacaacatt gcttaataaa
     3121 atatgaaaga aaaaccacac atgataaata ataaactgat ggcttctata ttattagctt
     3181 tggtcataat aacttttgac cctgtctctt taataacata tgcagaaagt caagctccta
     3241 atactaccag tataactatt gaagatagaa ttggaatgat aatgggtaac agaattacaa
     3301 agatgatgga tgacacaata aatatgataa agaatgtcaa tagtacggct atcgttaatc
     3361 aatctgaaaa cggaatcact ccagtaacaa accttacaga tgttgatgtt aataaaactg
     3421 aaataagaag tacaaacgaa ttagaaaaat tagcaggaaa caatatcgct ttaactgtag
     3481 acgatattag tacagatatt tccaatgctt ccatgttaga agaattagaa aaatctcgga
     3541 cagaaaatgc caccatggat aaacaagata cagcagcggt ctttgagggg cagaatattt
     3601 cttctacagt taatacaact gaaaacacat catatatcga tcagaagatt attaatgata
     3661 atacaagaac aaacacaaca ttatatgcag acaataaaac cttggctaca acgaccgata
     3721 aaccaacaag tagcaacaat ataggaaatt tctttactca aatcggcgaa tcagtcaaga
     3781 aattctttgg tggtaattga taaattatgt tggaaagaat ttcaaatatt aacccatgaa
     3841 ttcggtcaaa gtagactgtt ccttcttttg ttccttaaag attaatttca attccatcgt
     3901 taaagtttcg attctgctac gtaagtaatc actgatttta aattggtcgc acatattggt
     3961 tgcaatgcca acatattttt caaccgatcc tcgtgtgact gtttgtaaca attcgtttcc
     4021 acatccaata catcttccta ttaaaggcat tctgcgatac ttttctccac agttgctaca
     4081 tctaaaaccc tgggaagaat atgaccgcat attacccata atatcgggta aaatatgtgt
     4141 tgtaaggacc attgatacaa cttcgtcagg atcgacagca ttgattaact ttgcagtagc
     4201 gatctgcatc tctaattttt cattcatagt attgagtcta gagtatgcac tgcgttgaat
     4261 attggttgtt aacaaacctg taaaatgtgt aaaggcatag tcgaaaaatt ggctttcatt
     4321 tccaatccta tttttgacta attctatctt gtcagacaag tctcctgctt tggcctgttt
     4381 ccatgtcgct tcataaaact cgagtggata aaccgaagtg atgtcgatat tatgagcctg
     4441 tctttgaact tcatatggca atactattgg ttgaatcagt aatggtgcat ccataagtcc
     4501 accaatttta tctggtaaaa aattgtacga aaagttaagg aaagaatcca ttagtaacat
     4561 taatgaatct gcatcaccat cgcaatctct gcgttttgca gaatgccaaa caggagacgc
     4621 caaacagact tgggaatttg taaagccgat tatccttccc ataatgccta cagaagtatg
     4681 tggtgctagt cctactgtca aatgtccaac aagatcttct acagaggaag cattgtaaaa
     4741 aggttcaagt ccgtataatt ttacaagttc ttcatcaaca aattttgcta cattgagcaa
     4801 atgtttagca gaatccaaag gtattattac atcttgcatt aatagttcga ttaactgatc
     4861 agaggacgta agatccttgc cactataatc tctagtataa cctaattccc ttaatttttc
     4921 tatactagtc tgtatccagt ttggtttgaa gtgggtcaaa ggctcattag tggcgtcaaa
     4981 cctaatagtc ccatctttaa aagtatagag gctgtacttt tgtcgtaata tccctttctc
     5041 taatggctca gttgctttgt ctctgctcat aagagccttg acacccttaa atggctcagt
     5101 tgctttgatg ccaagttttt gctccgctgc ttcaactgtt gttttcaacg gatatttaac
     5161 tggagagtaa gttttgccct ctttaccaca gcgatgacac aagctgttgt cagcatcatc
     5221 taaaatctgc tctttgcaaa gaatacacag attgcgaaga ggagtaggcg cactacaatt
     5281 acggcagtgt attccaagtg aaggaagtct gcaattatta caaaatctat ttgaaatttc
     5341 agtataaaaa gattcattat ttgctgcctt caaaatatca cgtgttgcac cacctttgga
     5401 ccctatagga aatagtacat gaactggagg tttcatttta cgctctgcag ctttttcagg
     5461 acgtcctact cttactgcta ctgatgaagc aaattttggc ctaacttcta ctcctgatgt
     5521 tatggatata tattcacttg tatctttttt ttcaatacta ttagcagcag catgtgatga
     5581 ggagaaggac attcctttgg taatgtccgt attccctaca gccgccgatt gagaagataa
     5641 taataataat ctagtcaaag aataagactg atcttggcta ttaatctcga tagtattatc
     5701 tccacttttg actgaatgaa tgacgcctag tcgttccagg atgtctttta tctttggatc
     5761 gttatcgaat gaaagtaaat aagtatcaga agagatatta ttattactat tattattatt
     5821 tcttatgcta gtattttgct gtttttgtat acaaaatttt tcctttaaca ataaaacctc
     5881 atctatactg agagaatccc aataaaatga atattttgga tgaagtggaa tatcaaattt
     5941 tttactgatt tcaaatgcat cttcaactgt tggaaagatt gtaaatggat cctttgttag
     6001 ttgaatcagc ctctcgtttt a
//
LOCUS       DATABJ010000039         9286 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_906117, whole genome shotgun sequence.
ACCESSION   DATABJ010000039 DATABJ010000000
VERSION     DATABJ010000039.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 9286)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9286)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9286
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_906117"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            660..818
                     /locus_tag="VHF44_00655"
     CDS             660..818
                     /locus_tag="VHF44_00655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124091.1"
                     /translation="MENQGFSDHCKNGNHIECEECICNCHIPGTMDNLAKNIARLERQ
                     SPGLGESL"
     gene            complement(832..1893)
                     /locus_tag="VHF44_00660"
     CDS             complement(832..1893)
                     /locus_tag="VHF44_00660"
                     /EC_number="5.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-guided pseudouridylation complex
                     pseudouridine synthase subunit Cbf5"
                     /protein_id="HEX2124092.1"
                     /translation="MNFPQLHNLVKIDEDITDEKYGHFPDKRPIESLLNYGLILIDKP
                     AGPTSHEVVAWIKRILDIEKTGHSGTLDPGATGLLPIGLGEGTKALSVLLLGPKEYYA
                     LARMHAHISEQRINSLITEFIGDIYQRPPQRSAVKRATRVRTIFEFDKIEQNDRLILM
                     RILCQAGTYIRKIIYDIGEVLGPGATMVELRRTQVSNFSEKEGSFTKLHDLADAYQLY
                     NEKKEDAKIRKLIKPIEHCLEGIRAVTIRDTAVDALCHGAQLAVPGVLAVPSGLKPDE
                     LVGVYTLKGEIVGLAQAALTTETIENSTTGIAFIMKRIIMKPGTYPKVWHKSSQNFLK
                     LKTTNKRSSLDQLEDEDVQ"
     gene            complement(1900..2511)
                     /locus_tag="VHF44_00665"
     CDS             complement(1900..2511)
                     /locus_tag="VHF44_00665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidylate kinase family protein"
                     /protein_id="HEX2124093.1"
                     /translation="MTNIQNEKQKLSIVISGWPAVGKTTIAAELAKEFRLEIYNGGDI
                     LKMLAGEHGYSISGKDWWDTEDAKKFMIERKSNPSFDKEVDQRLVEIVKKGNVVITSY
                     TLPWLVKDAVKFWLKGSQSNRAKRMAYRDNISLEDAKNIINLRDEDNTKVYHQTYGFD
                     FGEDLTVFDFALNTDLMSLDDLIVISKDIVKKLTIYSCYYEEQ"
     gene            complement(2514..3119)
                     /locus_tag="VHF44_00670"
     CDS             complement(2514..3119)
                     /locus_tag="VHF44_00670"
                     /inference="COORDINATES: protein motif:HMM:NF014061.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="EMC3/TMCO1 family protein"
                     /protein_id="HEX2124094.1"
                     /translation="MNIIIDSIIMQIPGLMPQYTKHPLFPDMFTAMIVAALISIGMNY
                     AFALLRKKTTDIEKMNKVMKETNEWRKQYTDAIKKQDKVRVAELKKKQAYVNKMAMEM
                     QQQQMRPMLIYMAPSFMLWIFVFPAIFGQTVALSPIEIPWIMCNQQNVEIDTQTDENG
                     EPKGSCSVPGEVFLWGWFLITSFAFSGIISKVTHTSMPSLG"
     gene            complement(3116..3715)
                     /locus_tag="VHF44_00675"
     CDS             complement(3116..3715)
                     /locus_tag="VHF44_00675"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEX2124095.1"
                     /translation="MAENNKRVVVVGIPGVGKTTVISRTAEILNQRGTQTAVVVFGTM
                     MFEEARKLGISNRDAMRRESIEVQRHMQDLAARRIADLKDNIVIVDTHLFINTNEGYY
                     PGLPLHLLEVIKPTNIVMVAAHPEEIVNRRKIDETRDRDIESVEDIQYQLDISKVMVP
                     PCSVLTGCPFIIIMNSNNKIDETASNIVKALSDDYGSRI"
     gene            complement(3702..5132)
                     /gene="secY"
                     /locus_tag="VHF44_00680"
     CDS             complement(3702..5132)
                     /gene="secY"
                     /locus_tag="VHF44_00680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEX2124096.1"
                     /translation="MNTSQSESPFRRVVKSASRYIPQVEKPKKKISLTEKFVWCGIAL
                     FAYLIMGQIPLYGVTDDPAFDFLAFARVIFAAQQGTLMELGIGPIVTAGLLMQLLKGS
                     NLINLNFKNPDDRSLFTSATKIVTIIVIVAEGALYGVSVYGPLVASPSIIPIVVGQLI
                     GASIIVMFLDELIQKGWGLGSGISLFIMAGVAQTILWSIFSPLPAQDGPVGVIPFIID
                     SAATGHPEDSIFRAGQLPSIFVLVITAGILLLLVYVQGIHVDIPIVSTKYRGFTAVYP
                     IKLLYTSNIPVILSSALIANGIFMGQMLWANYNPQNDNPIFNGIAQFDPSAPQSPTGG
                     LLYYLTAPRGLETAVQDPVRAIVYVVLITAIVTVFGRLWVELGGLSAKSAAKNLLDAD
                     VQVPGFRRAEGSVEVLLNKYIPSVTILGGVIIGLLASTSDVLNVFGTGIGILLMVDIL
                     VNYYNLLIREQVDTHMPKLAALLGRK"
     gene            complement(5113..5550)
                     /locus_tag="VHF44_00685"
     CDS             complement(5113..5550)
                     /locus_tag="VHF44_00685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uL15 family ribosomal protein"
                     /protein_id="HEX2124097.1"
                     /translation="MATRFRKSRRQRGSRYCGWGQVGQHRQSGGRGGIGGAGKHKHFW
                     TRTVIEEPNHFGHDAFNSFNRNLVYNWINIKDLDSVVAKHGKVDQDGKVILDLTSLGY
                     DKLLGGGKVNSAFTVKITRISSSAMKKIQEAGGEVLTNEHIAE"
     gene            complement(5632..6090)
                     /locus_tag="VHF44_00690"
     CDS             complement(5632..6090)
                     /locus_tag="VHF44_00690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HEX2124098.1"
                     /translation="MAYLVVRIRGTVNIPHWANNTLDNLNLDKRFRATVIPENPESLG
                     MLRKVKEMVAWTSADATIIKELLEKRGKKTGFKPITNSDLPEGYNTIEELATAIADNK
                     IALSKIRSIKPWFALNPPRGGFKRKTKTQYSQDGILGEDKGLTDIVKRML"
     gene            complement(6100..6720)
                     /locus_tag="VHF44_00695"
     CDS             complement(6100..6720)
                     /locus_tag="VHF44_00695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEX2124099.1"
                     /translation="MSRYSRQQEEHVEWKPRTTLGMMVASGKISSMDQIYENGMRIQE
                     AEIVKRLLPEIKSQVVHVGIVQKQTDAGEMTRFNALVAVGNEAGWFGVGKGKASQMRI
                     SIDKATTAAYLDVIPVKLGCGSWECRCSQLHSIPFKVRGRGGSVAIEILPGPRGLGLV
                     AGENIKSLLKLAGLKDAWTKSFGSTSTMSSTIKAIFNALRSTYMSG"
     gene            complement(6717..7406)
                     /locus_tag="VHF44_00700"
     CDS             complement(6717..7406)
                     /locus_tag="VHF44_00700"
                     /inference="COORDINATES: protein motif:HMM:NF006342.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEX2124100.1"
                     /translation="MAYVHTLKRIRQRKTNYRKRSGILIGRRPFIITKISGQNISAQS
                     LKPTLTGDIVIASAHSRELIRHGWKGSMNSMPACYLTGLLLGKKTIEKGATNAVLYTG
                     NNPFTTKVAACLKGIVDSGIKIPVSKESLPGDDRVSGEHIASYAKLLKDSEEKYNSRF
                     SALLKQGLRPEDYPVHFEEIRMRISGKSSSEDKELNESDIEVNELSKEGSHNTNMAKS
                     KSSSKGGNRKE"
     gene            complement(7504..8304)
                     /gene="larB"
                     /locus_tag="VHF44_00705"
     CDS             complement(7504..8304)
                     /gene="larB"
                     /locus_tag="VHF44_00705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nickel pincer cofactor biosynthesis protein
                     LarB"
                     /protein_id="HEX2124101.1"
                     /translation="MELEGILNKFAQGHLSIDEVQKQITIHSIEYVKNNLAQLDIGRE
                     IRKGVPEVIFAEGKEYRDIISIVLCAIKKKEKVIVSRIRRDELSKLCKDLKKRKLNLD
                     IGRQSTTILVSRSNHRPTKTGAKIGILTAGTSDIGVAEEARLIANAMGCDAIFKYDVG
                     IAGIHRLFSPLKEMINENVDAIVVVAGMEGALASIVSSIVDIPVIGVPTSIGYGFGSN
                     GMAALGSMLQSCTFGLAVVNIDNGIGAGAFAASIANRMATKKKDTIRT"
     gene            9027..>9286
                     /locus_tag="VHF44_00710"
     CDS             9027..>9286
                     /locus_tag="VHF44_00710"
                     /inference="COORDINATES: protein motif:HMM:NF024258.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HEX2124102.1"
                     /translation="MKIGIISDTHDCIGNIEKSVKIFKHNEISFVLHAGDYTNPDAVR
                     SFQSVKLIGVLGNNDIDIDGLADAFNEIGGDLKGELYEFNEG"
BASE COUNT         2766 a         1929 c         1473 g         3118 t
ORIGIN      
        1 attccaggct tgcgccctcc caggctaggc gaccccggca atataatttt cctaacaaat
       61 ctgtatatta atcattcaaa ttatatttaa tgactacata tagaattatg gctgtatgaa
      121 aaataaagtt actattcctt gtcatatgca atactttcaa gcaatttacc tgatgataaa
      181 tcatattttt ttgttcctat atgtgcaaac ttagccttgt ggtcttgcat atcagaaaag
      241 aaaataaacg tcatgccgca tacgttacat atccataccg tcttcaaatc atcttgatgc
      301 atatcaatga tagagtcaaa ttcatgcaat ttaagtgata ggtaaggaag tcatactagt
      361 tttgtttaca attttattag gaaattatat gtaaggtatt gctaaagtaa aatcttagag
      421 agcaaactaa cttctttatt tcagggatat tcttttttgc taagaagtat acataactta
      481 aatgctatca attaacactt tattccaaca gtaaacagaa cttttacatt tatttgtatg
      541 aaaatacatt aataaaatcc attcttgata tcaaaccgca acattctgtt tacttatatg
      601 gctcaagaca tatagacaaa cgtaaaaata aggtttaaaa cataaaattc tcatcttcaa
      661 tggaaaatca aggattctcc gaccattgta aaaatggaaa tcacatagaa tgtgaagaat
      721 gtatatgcaa ctgtcatatt ccaggtacaa tggataacct agcaaagaat atcgccagat
      781 tagaaaggca atccccgggt cttggcgaat ctctttaatt ttcttttagt cttactgtac
      841 atcttcatct tctaattgat ctagactgct tctcttattt gtagtcttta gttttaggaa
      901 attttggcta cttttgtgcc atactttagg atacgtacca ggtttcataa ttattctctt
      961 cattataaaa gcaatacccg tggtactgtt ctcaatcgtc tctgtcgtta atgctgcttg
     1021 tgcgagccca actatttctc cttttagcgt atatactccg acaagttcat ctggcttcag
     1081 ccctgaaggt actgccaata ctccaggaac agcgagttgt gcgccgtggc aaagtgcatc
     1141 aacagctgta tcccttattg taacggcgcg tattccctcc aaacagtgtt cgataggctt
     1201 tatcaattta cgtatctttg catcttcctt cttctcgtta tatagctgat atgcatcagc
     1261 gaggtcatgt agttttgtga aacttccttc cttttctgaa aagttactta cttgggtccg
     1321 tcgaagctca accattgttg ccccaggacc caatacctca cctatatcat aaattatttt
     1381 tctaatatat gtgcctgctt gacacaatat tcgcatcaag ataagacgat cattttgttc
     1441 tattttatca aattcgaata ttgttcgtac tcgagttgcc ctttttactg ctgaccgctg
     1501 cggtggcctt tgataaatat ctcctatgaa ttctgtaatc aatgaattta ttctttgttc
     1561 ggatatatga gcatgcatac gtgctaatgc ataatattcc tttggtccta gaagtaagac
     1621 agaaagagct ttagttcctt ctccaagacc tattggcaaa agccctgtgg cgcccggatc
     1681 tagcgttcca ctgtgtcctg tcttttcaat atctaatatt ctttttatcc atgctactac
     1741 ttcatgactt gtaggaccgg ctggtttatc aattaaaatt aatccgtaat taagtaatga
     1801 ttctatcggt cttttgtctg gaaaatggcc atatttttca tcagtaatat cctcatctat
     1861 ctttactaga ttgtgtaact gaggaaaatt caaattgttt tattgctcct cataataaca
     1921 agaatagatt gtaagttttt ttacaatatc tttagatatg acaattaagt cgtcaaggct
     1981 cattagatca gtgtttagag caaaatcaaa aacggtaaga tcttcaccaa aatcgaatcc
     2041 atacgtttga tgatagacct ttgtattatc ctcatccctt aaatttataa tatttttagc
     2101 atcttctaaa cttatgttat ctcgataagc cattcttttt gctctattgc tttgtgagcc
     2161 cttaagccaa aatttaaccg catctttaac taaccacgga agagtataac tggtaattac
     2221 aacattccct ttcttaacta tttcaaccaa tctttgatcc acttctttat caaagctagg
     2281 atttgatttt cgttctatca tgaatttttt agcatcttct gtatcccacc aatcttttcc
     2341 tgagattgaa tacccgtgtt ctccagcaag cattttcaag atatcacctc cattgtatat
     2401 ttctaatcta aattcttttg caagttcagc agctatagtt gtcttgccta ctgcgggcca
     2461 gcccgagata acaatgctca acttctgttt ttcgttctgt atatttgtca attctaaccc
     2521 aaacttggca tggaggtatg cgtaacctta gatattatcc cgctaaaagc aaatgacgta
     2581 attaggaacc atccccaaag aaagacttct ccaggaacgg agcaagaacc tttaggctca
     2641 ccattttcat ctgtctgcgt gtctatttcc acattttgct gattacacat tatccatgga
     2701 atttctatag gtgaaagagc tactgtttgt ccaaagattg ctggaaatac aaatatccac
     2761 aacatgaatg agggtgccat atagattagc attggacgca tctgttgctg ctgcatttcc
     2821 atggccattt tgtttacata agcttgtttc ttttttaatt ctgccacacg cactttgtct
     2881 tgttttttta tcgcatcggt gtattgtttt cgccattcat tggtctcttt cataaccttg
     2941 ttcatctttt caatgtcagt agttttttta cgaagtaaag caaatgcata gttcattcca
     3001 atggaaatta atgccgctac aatcatagct gtgaacatgt ctggaaaaag aggatgtttt
     3061 gtatactgag gcattagacc tggaatctgc attataattg aatcaataat aatattcata
     3121 ttcttgatcc ataatcatca cttaatgcct taactatgtt tgatgcagtt tcatcaattt
     3181 tgttattact attcataatt ataataaatg gacagccagt caatacggaa catggaggaa
     3241 ccataacttt tgaaatatcg agttgatatt gaatatcttc taccgattca atgtctctat
     3301 cacgggtttc atcaattttt cttctattga ctatctcctc tggatgtgca gcaaccataa
     3361 cgatatttgt gggctttata acttcaagta aatgcagtgg gagcccagga tagtatcctt
     3421 cattagtatt tatgaaaaga tgagtatcca caatcacaat attatctttc agatcagcga
     3481 ttcttctagc agcaagatct tgcatatgtc gctgaacttc aatagactct ctccgcattg
     3541 catcacgatt gcttatacct aatttccttg cttcttcgaa catcatagta ccaaatacaa
     3601 ccaccgctgt ttgtgttccc ctttggttta gaatctctgc tgtcctagaa attacggtag
     3661 tctttcctac accaggtatt ccgactacta ctactcgttt attattttct gccaagaaga
     3721 gccgccaatt taggcatatg ggtgtcgact tgttctctaa tcaataaatt ataatagttt
     3781 actagtatat ctaccattag aaggatacca attcccgtcc caaacacgtt taagacatcg
     3841 gatgttgatg ctaacaagcc tattataaca ccacctaaaa tcgtgactga aggaatatac
     3901 ttattaagta atacttccac tgatccttca gctcttctaa aaccaggaac ctggacatca
     3961 gcatccagaa ggttctttgc agcggatttt gcagataacc cacctaactc cacccataac
     4021 ctcccaaaaa ctgtcacaat agctgttata aggacaacat aaacaatggc tctaactggg
     4081 tcctgtactg cagtttctaa acctctagga gccgtaagat aatacaacaa tcctcctgtt
     4141 ggactttgtg gtgcgctggg atcaaattgt gctatgccat tgaaaatagg attatcgttc
     4201 tgaggattgt agttagccca caacatctgg cccataaata tcccgttggc aatgagtgca
     4261 gatgataaga tcacaggaat gttggatgta tacaacagct tgatcggata cacagcagta
     4321 aatcccctat attttgtaga tacaattggt atgtctacat gtatgccttg cacatatact
     4381 aacaatagca gtataccggc agtaattacc aagacaaaaa tgcttggaag ttggccggct
     4441 ctgaagattg aatcttcagg atgacctgta gcagcagaat caataataaa aggaatcact
     4501 cctaccggcc catcctgagc aggcaaagga ctgaatatgc tccagagtat agtctgcgct
     4561 actcctgcca tgataaacag actaatgcct gatcctaatc cccagccttt ctgtatcaat
     4621 tcatcaagaa acattacaat gatactggca ccaattagtt gtccaaccac aattggtata
     4681 atactaggtg aggctacaag aggaccgtat acgcttacac catataatgc accctctgca
     4741 actattacaa taattgtcac tatctttgta gccgatgtaa ataatgatct atcgtcagga
     4801 ttcttgaaat ttagattaat gagattagag cctttcagca actgcatgag caatcctgct
     4861 gtaactattg gaccgatgcc caattccatc aatgtacctt gttgtgctgc aaaaataact
     4921 ctagcaaacg caagaaaatc aaatgcagga tcatcggtaa caccgtatag aggtatttgc
     4981 cccataatta aataagcaaa aagagctata ccacaccaaa caaacttttc agtaagcgat
     5041 attttctttt tcggtttttc aacctgagga atatatctag acgcactttt aactactcgt
     5101 ctaaatggac tttcactctg cgatgtgttc atttgtcaat acctcgcctc cagcttcctg
     5161 aatttttttc attgcactac tcgatattct tgttatctta acagtaaatg cactgttaac
     5221 cttgcctcca ccaagcaact tatcgtagcc aagagaggtt aaatccaaaa taacttttcc
     5281 atcctggtct accttaccat gtttagcaac aacagaatct aaatctttga tgttaatcca
     5341 gttataaact agattcctat taaatgaatt gaaagcgtca tgtccaaaat gattaggttc
     5401 ttcaattact gtacgcgtcc agaagtgctt atgttttccg gccccgccaa taccgccgcg
     5461 gccaccggat tgtctgtgtt gacctacctg tccccatcca caatatctgc tgcctcgttg
     5521 tcttctactt tttctaaatc tagtagccat ttttgatata ttctcctttt tcaattaact
     5581 ttgaaaggtg ttttaaattc attctatcac cttacttaag ctttgctcta ttcataacat
     5641 tctcttcacg atatcggtta agcctttgtc ttcaccaagt atgccatctt gagagtactg
     5701 tgtcttggtt ttccttttaa aaccaccacg aggaggattc aatgcaaacc agggtttaat
     5761 ggatctaatc tttgacaatg ctatcttatt atctgcaata gcagttgcaa gctcctcaat
     5821 agtgttatat ccttctggca gatcggaatt cgttatgggt ttaaatccgg tttttttccc
     5881 tctcttttca agcaattcct ttataattgt cgcatcagca gaagtccaag caaccatttc
     5941 cttgactttt cttagcatac caagagattc tggattttct ggtattactg ttgcgcgaaa
     6001 tcttttgtcc agatttagat tatctaaagt gttatttgcc caatgcggta tgtttactgt
     6061 tcctcttatt cgaacaacta gataagccat atctaataat caacccgaca tataggtgct
     6121 tctgagtgca ttgaaaatag cttttattgt ggatgacatt gtgctagtcg atccaaaaga
     6181 cttcgtccat gcatctttta atccagcgag ttttagaagg cttttgatat tctcacctgc
     6241 aacaagaccg agtcctcttg gacctggaag tatctctatt gctacacttc ctcctcttcc
     6301 tctaactttg aatggaattg aatgaagctg actgcatctg cattcccagc ttccacaacc
     6361 taactttact ggaattacat caagataagc cgcagtggtt gccttgtcta ttgaaatacg
     6421 catttgggat gctttaccct tcccgactcc aaaccaacct gcttcattgc caactgcaac
     6481 taaggcattg aatcgagtca tttcgccagc gtctgtttgt ttttgaacaa ttcctacatg
     6541 aactacttga ctctttatct ctgggagtaa ccttttaaca atttctgcct cctgaattcg
     6601 cataccattt tcatagattt ggtccatgga actgatcttt ccgctggcta ccatcatacc
     6661 caatgtcgtt cgcggcttcc attctacatg ttcttcctgc tgacgagaat atctactcac
     6721 tcttttctat tacctccttt agacgaagat ttcgacttag ccatattagt attatgggat
     6781 ccctctttgc tcaattcatt tacttcaata tcagattcat tcaattcttt gtcctcagaa
     6841 gaggatttgc cagaaattct cattctaatc tcttcaaaat gtactggata atcttcaggc
     6901 cttagacctt gttttaaaag cgcagaaaac cttgaattat atttttcttc actatccttt
     6961 aacaatttag catagctagc tatatgttct ccactcacac ggtcatcgcc aggaagagat
     7021 tcctttgaaa ctggaatctt aattcctgaa tctacaatcc ctttcaaaca tgctgctact
     7081 tttgttgtga atggattatt accagtatat aaaaccgcgt tggtagctcc cttttcaata
     7141 gttttctttc ctaataaaag accagtaaga taacaagcag gcatgctgtt cattgaacct
     7201 ttccatccat ggcggataag ttctctgcta tgagcagaag caataacaat atcgccggtt
     7261 aaagtaggtt tcaaagattg agcggaaata ttttggccgc tgatttttgt aattatgaac
     7321 ggtcgtcgac cgatcaaaat accactcctt ttacggtaat tcgttttacg ttgtctaatt
     7381 ctcttaagag tatgaacata agccataact aaccattcac cactttttta ataattaaaa
     7441 ggcaaacgat agaaagcact tataaacgtt ttaacataat atgcttgaac gatataataa
     7501 atattaggtt cgtatagtat ctttcttttt tgttgccatt ctattagcta tcgatgcggc
     7561 aaacgcgccc gcaccgattc cattatctat attaactact gcaagaccaa acgtgcaact
     7621 ctgtagcata gatcctagag cagccatgcc gttggaacca aatccataac ctattgaagt
     7681 cggaacccca attacaggaa tatcaactat tgaagaaaca atagatgcaa gagccccttc
     7741 cattcctgca acaactacta tcgcatcaac attttcatta atcatctctt tgagtggaga
     7801 gaagagtcta tgaattcctg ctattccaac atcatatttg aaaattgcgt cacagcccat
     7861 agcgtttgca attaatctgg cttcttctgc aactccaata tcagacgtac ctgctgtaag
     7921 gatacctatt tttgctccag tttttgtcgg tcggtggtta ctcctagaga ctaaaatagt
     7981 cgtgctttgt cttcctatat cgagattcag ttttctcttt ttcaaatctt tacaaagttt
     8041 agacaattca tctcttctaa tcctgctaac tatcaccttt tcttttttct ttatggcgca
     8101 tagcactata ctaataatat ctcggtattc tttaccttcc gcgaatatta cttcaggtac
     8161 tccctttcga atttcccttc ctatatctaa ttgagcaaga ttatttttga catattctat
     8221 agaatggatg gtaatctgtt tttgaacttc atctatgcta agatgacctt gcgcaaattt
     8281 atttagaata ccctctaatt ccattcttag ataagataga atacgtccat atatgtctag
     8341 tctaagccat cattatatat caactaaagt aagtattgct actacagtca ttaaagattc
     8401 agtaattgat agaaaataga gatgtctaca gtctaattag ttccatataa ttcttaacat
     8461 cttttaaaaa agtgtcaaaa aaaatgcact gatatagata tgctcttgct atgaagatag
     8521 aaattaatct atcaggccat tatagacaat acataattgt cttttagtcg gattttcaat
     8581 ctttaacaat aataataatc atccaaacac gtatctagac atgacatctt atcttttctc
     8641 gatagctatc gaaagtcaga aacaaggaga cttgttgtat aagtcaatcg ctgcttataa
     8701 tatatataga atacatttaa tgaaattctt caggcattta tattatccta aattataacc
     8761 aaacaaaagg acaaaccgca agtcagccaa tatctcgcta ttggaaaaga aagaatagtc
     8821 aatatgcaag cctacggata atgtacgaag aagatgacat tctctttcga aaatattgta
     8881 ttggtaagcg tatcaaatgt tatcataaga ttttaagcaa tactagttgc aaaaagcatt
     8941 tcatttgcac cattgattct ttaagttcat tgaattacta tatataggta ttttaagtcc
     9001 tggaaaaatc ggtagatcag atacgtttga aaattggcat aatatctgac acacatgatt
     9061 gtatagggaa tatcgaaaag tctgtcaaaa tattcaagca taatgaaata agttttgtac
     9121 ttcatgctgg tgattatact aatccagatg ctgttagaag ttttcaaagt gtaaaactaa
     9181 taggagtttt aggaaataac gatatagata tagatggttt agctgatgcc ttcaacgaaa
     9241 taggcggcga tcttaaaggc gagctttatg aattcaatga aggcag
//
LOCUS       DATABJ010000040         2208 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1124475, whole genome shotgun sequence.
ACCESSION   DATABJ010000040 DATABJ010000000
VERSION     DATABJ010000040.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2208
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1124475"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(40..951)
                     /locus_tag="VHF44_00715"
     CDS             complement(40..951)
                     /locus_tag="VHF44_00715"
                     /inference="COORDINATES: protein motif:HMM:NF012509.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124103.1"
                     /translation="MASVVATPVATAKAFSPGHITGIVIKSAEKGNYLHAGSKGAGFS
                     IDRGISTVVEVFEHKTPNYQISINSKVVDANVSKWVVESYLGFVHKPYYINIKHETDI
                     PIGFGLGSSGAGALSLSYALNEALDTKLSKYKVAQIAHHAEIACKTGLGTVIAEFFGG
                     FEIRTSIGAPGVGLIEKIDLKDYKALVLCIAPLSTKLFLSDHVSLANQLGEMMLKRLK
                     ASKDIDEFLSMSYQFADNLGLTQCRCKEPLKILKSHGIEAGVALFGETIFTIVPLDRV
                     NYAKQCLKSFEGTLIVCNIDKTGARVL"
     gene            1021..2034
                     /locus_tag="VHF44_00720"
     CDS             1021..2034
                     /locus_tag="VHF44_00720"
                     /inference="COORDINATES: protein motif:HMM:NF014010.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate uptake regulator PhoU"
                     /protein_id="HEX2124104.1"
                     /translation="MSRYARRLQKIGSSMLISLPSEWIKNNNLKKGNMVMIEVNRNNS
                     ISLYPSDIDTEDVKEVNIPHPQLSMDSLTNQIYGAYLLGYDVIRIKGKSQISFDDREL
                     IKLAMRKLVGLEIVDENGSNIISQFLLDANTLDAEKILRRMSSIVAGMYKDTLIGIQK
                     KESGSEKSIVSRDDEVDRQYFLLVRLIRSAMMDQKLASKLNLSNIDILDYRIAANHLE
                     SAGDYITDFAAALPIISHDNLIEEIIQAASLIEKMQEKSIAGFINKNRVESNEVVKIY
                     SKFNDLLNLTKELSAQTEIDKQDAPIALLNSIFSMDKIARCWVDIADLVKPVYLTAAL
                     RNA"
BASE COUNT          724 a          391 c          408 g          685 t
ORIGIN      
        1 cgggtgactt gatggaataa tagatctatg catagttatc tatagaactc tcgctccagt
       61 tttatctata ttgcatacaa ttaaggtacc ttcaaaactc ttcaaacact gtttcgcata
      121 attcactctg tctaaaggta caatcgtaaa aattgtctct ccaaataacg caactcctgc
      181 ttcaattccg tgagatttta ggatttttag tggctcctta catctacatt gggttaatcc
      241 aagattgtcc gcaaattggt aagacatact taagaattca tcaatgtcct ttgaggcttt
      301 caatcttttt aacatcattt ctccaagctg atttgccagg ctcacatggt cactaagaaa
      361 tagtttggta gaaagcggag caatgcataa aactagagct ttatagtctt tgagatcaat
      421 tttttctatc aaacctacgc caggagcacc aatactagta cgtatttcaa agcccccaaa
      481 aaattccgca attacggttc ctaagcctgt tttgcaagca atctctgcat gatgtgcaat
      541 ttgtgctacc ttgtatttgc taagttttgt gtcaagggct tcattgagcg cataggaaag
      601 gcttagtgct cctgctccac tagagcctaa tccaaaacct attgggatat cagtttcatg
      661 cttaatatta atataatatg gtttatggac aaatccaaga taactctcta caacccattt
      721 ggatacattg gcatctacta ctttgctatt aatagaaatt tgataatttg gtgtcttatg
      781 ttcaaagact tctacaacag tactaattcc acgatcaata gaaaatcctg caccttttga
      841 acccgcatga agatagttgc ctttctcagc agattttatg acgataccgg taatgtgacc
      901 aggactaaat gccttagctg ttgccactgg ggtcgcgact actgatgcca cattccatca
      961 tcgcgaccaa aaaatataaa aatattgttt aattagttta aataggtata aattagtcgt
     1021 atgtctcgtt atgcacgaag gttgcagaaa ataggaagta gcatgttaat atccttacct
     1081 agcgaatgga taaagaacaa caacttgaaa aaaggaaata tggtaatgat cgaagttaac
     1141 agaaataact ccatctcatt atatccctct gatatagaca ctgaagatgt aaaggaggta
     1201 aacatcccac atcctcaact atctatggat agccttacaa atcaaatata tggtgcctat
     1261 ctgctcgggt atgatgtcat acgtattaaa ggaaagtctc aaatatcttt tgatgaccga
     1321 gagcttatca agcttgcaat gagaaaactt gtcggattag aaatcgttga tgagaatgga
     1381 tctaatatca tttcgcagtt cttactagat gcaaatacat tggatgctga gaagattctt
     1441 agacgaatga gttctatcgt agcaggcatg tataaagata cgctaatagg gattcaaaaa
     1501 aaggaaagtg gtagtgagaa atcaattgtt agtagagatg atgaagtaga tcgacaatat
     1561 tttttactcg tgaggttgat acgaagtgca atgatggatc agaaactggc gagcaaactc
     1621 aatttaagca atattgatat tttggattat cgaatagctg caaatcattt ggagagtgct
     1681 ggagattata ttaccgactt tgcagcagct ttgcctatta tttctcatga taatctcatc
     1741 gaagagataa ttcaagctgc ctccttgatc gagaaaatgc aggagaaatc tattgctggt
     1801 tttataaaca agaatcgagt tgaatcaaat gaagttgtca aaatctacag taaattcaat
     1861 gacctgttga atttaacaaa ggaactttct gcgcagacag aaatagacaa acaagatgct
     1921 ccaattgcac ttctcaattc tatcttttca atggataaga ttgcaagatg ctgggttgac
     1981 atagctgatt tagtaaagcc tgtgtattta acagcggctt tgcgaaatgc ctaagattgt
     2041 aaatcaaaaa aagttgttct attcgtcagt gtatgctaga cttggtcttt gaaatataac
     2101 gtgctttgca gaacatgaaa atatctagtt catcaaacta atagttaaag aatgaggaaa
     2161 gtatactagt acctatttga ttgtgtctta tccattgtgt ctctaata
//
LOCUS       DATABJ010000041         3724 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1125055, whole genome shotgun sequence.
ACCESSION   DATABJ010000041 DATABJ010000000
VERSION     DATABJ010000041.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3724)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3724)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3724
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1125055"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(163..927)
                     /locus_tag="VHF44_00725"
     CDS             complement(163..927)
                     /locus_tag="VHF44_00725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX2124105.1"
                     /translation="MQFVQISDMHIGGLFKQDSFNTIVQEVNNLKPNAIIISGDLTDD
                     GLIFQFQQAHTEIKKFNCSNLIVFPGNHDYRHTGYLLFKKFFPSSKQIYEFDDVVVLT
                     VGTARPDRDEGEVGHRQNLWIEETLSKYVNKTKIVAMHHHLIAIPDTGYTNVVGILDA
                     GDTLRAFLESKVDLVLCGHKHRPWLWNLGSLKIAYAGTACSWRYRGIFEDTYNIIDVR
                     DGKIDVNIKIVGGKRMPLSDVVKKYETEIRNTILSK"
     gene            complement(1255..1797)
                     /locus_tag="VHF44_00730"
     CDS             complement(1255..1797)
                     /locus_tag="VHF44_00730"
                     /inference="COORDINATES: protein motif:HMM:NF013224.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX2124106.1"
                     /translation="MLKTFKHQQRSLNVQLDSDLLDNINLKIIDFLSKDSSTPFVEIA
                     KQIGISDATVHIRVRRLLAAGIINKFTISVDNNRLGYDHLAFMGINVEPGFAEELTDE
                     LSKVDEVLEIHEMHGRFDLLLKVRAKDLDQMRDIVVNKIRILPHIIETELMTVLKSRK
                     EEQIVSLKKDLSDKADGLTL"
     gene            1905..2852
                     /locus_tag="VHF44_00735"
     CDS             1905..2852
                     /locus_tag="VHF44_00735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00269 family protein"
                     /protein_id="HEX2124107.1"
                     /translation="MSQRPCNKCHNGLSVFYRSYSGEYLCKKCFLQSIEEKAAKTMSK
                     FSMLNYNDRVAVAVSGGKDSLALLFVMKKIFEKHDRSDVIAITIDEGIEGYRNESLQI
                     VKKFCSDLKIESKILSYKNLFGIDMDKAMMTRPSDKMTSCSMCGTFRRRAIDLAAESV
                     GANIIATAHNLDDQLQTFTINLFAGDIERIGWIYPEPVQYGSNGLKKIKPFVEIYEHE
                     IAFYALQRNIPFQSEECPYMHESIRTDIREFLNKLEKGHPGIKYNTYNSILKISKSMK
                     SVSLIHTPKKCSVCRRDSTGDICSVCRTVGILTSNNRLA"
     gene            3092..3407
                     /gene="ffs"
                     /locus_tag="VHF44_00740"
     ncRNA           3092..3407
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="VHF44_00740"
                     /product="signal recognition particle sRNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF01857"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="archaeal-type; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01857"
BASE COUNT         1198 a          622 c          664 g         1240 t
ORIGIN      
        1 gaaactatat gtgtaataaa taatcatata atattgttat actgcatagg ttacaaacta
       61 atgtggttga cacgatacca tttgacaatt attatgtaat aagcacaata atgaaatgag
      121 gaaggaggag acaggttaaa acatgtcgaa agtaataaac gactattttg ataatattgt
      181 attccttatc tcagtctcat atttcttaac tacatctgaa agaggcattc tttttcctcc
      241 cactattttt atattaacat caattttacc atctctaacg tctatgatgt tgtatgtatc
      301 ttcaaatatt cccctatagc gccatgaaca ggcggttcct gcatatgcaa tttttaaaga
      361 tcccaaattc caaagccaag gtctgtgctt atgaccgcag agaacgagat ctactttaga
      421 ttccaagaat gctcttaagg tgtctcctgc atcaagaata ccgacaacat tggtatatcc
      481 tgtatcaggt atagctatca aatgatgatg cattgctaca atctttgttt tgttaacata
      541 tttgcttaga gtttcttcta tccataggtt ctgtctatgt cctacctcac cttcatctct
      601 atcaggtctg gcggttccga cagtaagtac aactacatca tcaaattcat aaatttgctt
      661 tgaagaagga aagaatttct tgaacaaaag ataacccgta tgacggtaat catgatttcc
      721 gggaaaaact attaaattag aacaattgaa ttttttgatt tctgtatgag cttgctgaaa
      781 ctgaaatatt agaccatcat ctgtcagatc gcctgatata attattgcat ttggttttaa
      841 attgttaacc tcttgaacaa tggtattgaa agaatcttgt ttgaaaagac caccaatatg
      901 catatcagat atctgaacaa actgcattat ctacctactt cctaacaaca taatatatta
      961 atagaatgct gataaactag aaattaattg tgtcgttaaa ctcatttgca tattattcag
     1021 cttttgatta gtagatgatg taaatgatca tgatgtgtta gtatatgcat tgacacacac
     1081 aataattggt agaatagtga ttttgaaata aggctttagt agagtagtta ctagtggtat
     1141 gatataaaat aattaattga tagtccttta tattatttca ctcgacatga taaaaattgg
     1201 atttaaatcc acatatcatc tatgcttcaa tttcacaagt tgattaaacc ttatttataa
     1261 tgttaaccca tcagctttgt ctgagagatc ttttttcaag gagactatct gctcttcttt
     1321 tctggatttc agaactgtca ttaattctgt ttctataata tggggtaata tacggatctt
     1381 atttactaca atatctctca tctgatccaa atctttagca cggactttca aaagcaaatc
     1441 aaatctgcca tgcatttcgt gaatttccaa tacctcgtca acttttgata gctcgtcagt
     1501 aagctcttct gcaaatccag gttctacatt tattcccatg aaagcaaggt ggtcataacc
     1561 aagtcgattg ttatctacgg aaattgtgaa cttattaata attcctgctg caagcaggcg
     1621 cctgactctg atatgcactg tggcatctga aataccaatc tgtttagcta tttcgacaaa
     1681 tggtgtcgat gagtctttac tcaaaaaatc tattatcttg agatttatat tgtctagtag
     1741 gtctgagtct aattgcacat ttaaactacg ttgttggtgt ttaaatgttt ttaacataac
     1801 aacattttcc tatgatatct ctttattatg aggaaaataa gaattgttct ggttcatgtt
     1861 actgatatca agaaataata atacttattg atttaatata ttcaatgtca cagagacctt
     1921 gcaataaatg tcataatgga ttgagtgtat tttatagatc ttattctggg gagtatctat
     1981 gcaaaaaatg ctttctgcag tctatagaag aaaaggctgc caaaactatg tccaagtttt
     2041 cgatgctcaa ttataatgac agagtagcag ttgctgtttc gggaggcaaa gacagtttag
     2101 cgttactatt tgttatgaaa aaaatctttg agaaacatga ccgttcggat gttattgcta
     2161 taacaataga tgagggaata gaaggttatc gtaatgaatc attgcagatc gtaaaaaaat
     2221 tctgttcaga tctaaaaata gagagtaaaa ttctcagtta caagaatcta tttggtatag
     2281 atatggataa agctatgatg acaagacctt ctgacaagat gacttcttgc tcaatgtgcg
     2341 gcacttttcg tagaagagca atagatttgg cagcagaatc tgtaggtgca aatatcatag
     2401 cgacagcaca caatttagat gatcaattac aaacttttac aataaacctt tttgctggag
     2461 atatcgaaag gataggttgg atttaccctg aaccggttca gtatggttca aatggcttga
     2521 agaagataaa accttttgta gagatttatg aacacgaaat agcattctat gctttacaga
     2581 ggaatattcc atttcaatca gaagaatgcc catatatgca tgaaagcatc agaactgata
     2641 ttcgagaatt tctaaacaag ctcgaaaaag gtcatccggg aatcaaatat aacacataca
     2701 actcgatctt aaagatttct aaaagtatga agtcagtatc actaatacat acgcccaaaa
     2761 aatgctcagt ttgcagacga gattctactg gagacatctg ctcagtttgt agaactgttg
     2821 gtattctgac tagtaataat aggttagctt aaagtattcc ttattacaga cttggtgggt
     2881 catttatgct tgactgtcag gtgttattaa ttattataga tgatatatca ccatccatat
     2941 agatattatg gattataaga aacaatcaca ccttcatatg tgatattaga ttgattcagt
     3001 taaaaccaat ttatccttta aaccaattgt aattagaaga tataagataa gtgataagca
     3061 aatataatga aactgcgtaa tagagttgcg gaggcaggga ggatcggggt gccagccgta
     3121 ccccatatca gaaatcggct tcatgctggg atcagtaact gctgggtaaa tccatagatg
     3181 gaaggcacct gcttgacttg ctgaaatgaa atcacgccgt gtcggatggt tatgaacagc
     3241 gtactgcgtg aaggcgcagt ttcgactgtg aatcgttgaa atgggtgagg tccgggaggg
     3301 agcaacccta aggcggcata gtcatgctgg cacgtctacg tggtggatct tgtatagctt
     3361 gagatgggac cttgtgttta tggtggtacc agtaggctgc cccgcctttt taaaatatta
     3421 tattgagaca cattactact cctatagagt aggcgtctat cctatccttt tctcgtagtc
     3481 tataatatga tcagctctag ttttcttccc ttcataacaa tggtgattcg gatcttaaat
     3541 aaatctgttc tagatgcatt actttgtctt gtttggcttt ttaattaagc cttttagtat
     3601 aacaatacaa atctgtcttg ataattattt attttcttaa tgtacgatct tgattttgta
     3661 tgaaactctg cagaaagtat aggagatgaa tgacatagtc cattctctct cacatttacc
     3721 acat
//
LOCUS       DATABJ010000042         1936 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_473754, whole genome shotgun sequence.
ACCESSION   DATABJ010000042 DATABJ010000000
VERSION     DATABJ010000042.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1936)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1936)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1936
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_473754"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            689..934
                     /locus_tag="VHF44_00745"
     CDS             689..934
                     /locus_tag="VHF44_00745"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124108.1"
                     /translation="MDSTLKSTLKSTLKRQIPYLIGGTITGIIMSYYYGFIVSIIVNS
                     AIWFVISTVVNKYYWNYTGFKEEMYLMKFGLSRINAR"
     gene            980..1243
                     /locus_tag="VHF44_00750"
     CDS             980..1243
                     /locus_tag="VHF44_00750"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124109.1"
                     /translation="MPLICVSNRDDNNDRKKITVGRVYAVSTLLAVIIAIPAVAVTFV
                     MHYVIRADFFLTLGAGLITLFIAMGFGYKLSKKFVKILSGNSR"
     gene            1303..1443
                     /locus_tag="VHF44_00755"
     CDS             1303..1443
                     /locus_tag="VHF44_00755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124110.1"
                     /translation="MTLKQIRVTLTETIILTLYRRQSYNGRPASFKGSLEGEELKIIN
                     PS"
     gene            1462..1794
                     /locus_tag="VHF44_00760"
     CDS             1462..1794
                     /locus_tag="VHF44_00760"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124111.1"
                     /translation="MNINLVSSENFMFSTLLWRYRYPISKNSCGDPNTTVNLKHIALQ
                     LCTCTWIEIMTGAGIILYMLYLGNYTLAAIIVAVFAPLIGFHFAVSKIQHSNVEWNPT
                     RRTIKLRS"
     gene            complement(1791..1934)
                     /locus_tag="VHF44_00765"
     CDS             complement(1791..1934)
                     /locus_tag="VHF44_00765"
                     /inference="COORDINATES: protein motif:HMM:NF014768.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124112.1"
                     /translation="MFKCPNLKCITNSGEEIRSLIDVIDMEKVVLKCRYCARTLSTDE
                     LVF"
BASE COUNT          602 a          343 c          386 g          605 t
ORIGIN      
        1 cttgagaacc ttctttaacc gaatcatgca aacgtaggtg gagactgaat tgattaagca
       61 gttgcaagag ggaaagccgt atacagggac actgattact gcctgatact tttgctgttg
      121 gcacaaaaac taggtctcta tatgtagccc ctttgaatga aatacaaagt ttcaatcaga
      181 ttcaatagct gagaggatgt aagaggaatt gtagaatgta aagtaaagta gctgtcgctg
      241 atattgacca ggagcccatc gatcatccca gcgcagccag ccacaattgt tgcgtacggt
      301 tctctaaatc aaatgcaacc tcccattttt atttaggggt cgtaggattt ttctagaggc
      361 cgatgattaa actactatta ttactctctg cgctcttgtt tttcgtcttt atagtatgtg
      421 aacaacatcg gtattagagc tcgtatgatt ggcgggcccg tcgggatttg gataaaaatt
      481 caatagaatc caaagacgag gtttcggcag ttagtattac ctaaaggcta tggctaataa
      541 tatttaatag ctttacgaat aggaatatgc ctcagcagtt tccgaagaac tagaggataa
      601 tgccataatt tctgttgaaa gtggtgctaa tactatatag gcttatatac atataagcta
      661 tgttatctat taataggtag aatatattgt ggactctact ttaaaatcaa cgctaaaatc
      721 aacgctaaaa cgtcaaattc cttaccttat aggaggtact ataactggca taattatgtc
      781 gtattattat ggctttattg tttccatcat agtaaatagt gctatttggt ttgttatatc
      841 aactgttgtt aacaaatact actggaatta cactggattt aaggaagaaa tgtatcttat
      901 gaaatttggt ttatctagaa tcaatgcaag atgaataaat taaatttggg cttcatataa
      961 caaggcttaa attaattcca tgcccttgat ttgtgtgtcc aatagagatg ataataatga
     1021 tcgaaaaaag atcacggtag gtcgcgtcta tgctgttagt accctcttgg cagttataat
     1081 agcaattcct gctgtagcag ttacattcgt catgcattat gtgatcaggg cagatttctt
     1141 cttgactctt ggtgcaggat tgataacact ctttattgca atgggttttg gatacaagct
     1201 gtcgaaaaag tttgtcaaga ttctatctgg taatagtcga taaaatatac aaggtgttat
     1261 agacgattgc tatcaataca acgaagagag aaaaccacca atttgacact taagcagata
     1321 agagtcacgt taacagaaac cattattctt acattataca ggaggcagag ttacaacgga
     1381 cgtcctgcaa gcttcaaagg ttcattagag ggtgaagaat taaaaataat caatccatct
     1441 tagcttgaag accttattaa tatgaatatt aacttggttt catctgaaaa ctttatgttt
     1501 tcaactctac tatggagata ccgttatcca attagcaaaa atagctgtgg tgacccaaat
     1561 acaactgtga acttaaagca catcgctttg cagctctgta cctgtacctg gattgagata
     1621 atgacaggcg ctggcatcat actctatatg ctgtaccttg gcaactatac tctagcggct
     1681 attattgtgg cggtgtttgc accactgatc ggctttcatt ttgcggtcag caagatacaa
     1741 catagcaacg tagaatggaa tccgacgagg aggacaatta agttacgttc ctaaaaaacc
     1801 agttcgtcag ttgagagcgt ccgggcgcag tatctacact taagcaccac tttttccatg
     1861 tcgatgacat ctatcagtga tcttatttct tcaccgctgt ttgtaatgca ttttaggttg
     1921 ggacatttga atatcc
//
LOCUS       DATABJ010000043         3149 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1994336, whole genome shotgun sequence.
ACCESSION   DATABJ010000043 DATABJ010000000
VERSION     DATABJ010000043.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3149)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3149)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3149
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1994336"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..584
                     /locus_tag="VHF44_00770"
     CDS             <1..584
                     /locus_tag="VHF44_00770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124113.1"
                     /translation="KDRKENQIEHSYNHLDREGLGGQNTAAIPVNEERFSISKNTVSE
                     DVKIEKRWISATRKVEIPLPYEEVYVNDKVVKLFDEKDDDNILSKLKDKILDSIDRDK
                     NKQQQTTISQQQNEPRGELIPLFDDNDNNQITEKVIPILGEEIVVSRRTVKIGEIVIK
                     NRRVPDNKKIQIDIKKEKVILEYPDGTTEQITA"
     gene            811..1584
                     /locus_tag="VHF44_00775"
     CDS             811..1584
                     /locus_tag="VHF44_00775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0047294 - phosphoglycerol
                     geranylgeranyltransferase activity [Evidence IEA];
                     GO_process: GO:0006650 - glycerophospholipid metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="geranylgeranylglyceryl/heptaprenylglyceryl
                     phosphate synthase"
                     /protein_id="HEX2124114.1"
                     /translation="MIYNYKQSRNNLRQTVEDYIVNELGKHGTLCFPLIDSENFLNAS
                     SIAKKAELMGASGILVGGSSAVDQLELAEIVSSIKSRIQIPVILFPGNVTGISPKADA
                     ILFSSLLNSENPYFITEAQALGALAVKKYGIEPLPTGYLIIGEGTTAWFVGRARAIPF
                     NKSGIAIMYSLAAQYLGMRFLYLEAGSGAVQNVSPQMVSAVRKHYEGILIVGGGIRTP
                     ETAKEIADAGADAIVIGTMIEKEGNWEDRFSSIINAIRR"
     gene            1598..>3149
                     /locus_tag="VHF44_00780"
     CDS             1598..>3149
                     /locus_tag="VHF44_00780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase II large subunit"
                     /protein_id="HEX2124115.1"
                     /translation="MTIISDAEILLKEVNMPEYYLNYQHEILNNVQRNFELATKARRM
                     GLDVSDRVEPKIAYDLADRVAKMHNIDIADRLRALLSHTTKEKATLKIAEEIALGEYG
                     IGDLRTRLDNAVRVSLAVMTEGVTVAPLQGIADVQLKNNANGSQYLSVSFAGPIRSAG
                     GTEAALTMLIADHIRKVAGVDKYIANSYDDETGRFVEELRIYEREVGNFQFKILDEDV
                     VKCITNLPVELDGVDTDPVEVVGHRGMNRISTDRVRGGALRVMNDGLIGRSRKLLKLV
                     EILKLDGWNWLNDLKGAIQTGDDDAAHHRMSEVITGRPVLSMTKKIGGFRLRYGRCCN
                     TGFATIGIHPVVPILLNYAIVVGTQIKMDVPGKASTIALVDTIEPPLVRLDDGSVVQV
                     SSVDQAMKIRSRVDKILYLGDILISYGDFLENNAQLLSASYVEEIWALQLHSRLLTLS
                     SSSDFPMGEIKNERLIQLTKDPFTIFPTVEEAFEISKKFDIPLHPKYSFYWDSLSIDE
                     VLLLKEKFC"
BASE COUNT         1106 a          489 c          653 g          901 t
ORIGIN      
        1 aaaaagacag gaaggaaaat caaattgagc attcttataa tcatctagat agggaaggtc
       61 tcggtggaca aaatactgct gccattcctg ttaatgaaga gcggttctca atttcaaaga
      121 ataccgttag tgaagatgta aaaatagaaa aaagatggat cagcgcgact agaaaagttg
      181 agataccatt accatatgaa gaagtatatg tcaatgataa agtggtaaaa ttatttgatg
      241 agaaagatga tgacaatata ctatcaaaac taaaagataa aatcctagac agtattgata
      301 gggataagaa taagcagcag cagacgacaa tatcacaaca acaaaatgaa ccaagaggag
      361 aattgattcc attatttgat gataacgaca ataatcaaat aactgaaaag gtaattccta
      421 tcttgggaga ggagatagtg gttagcagaa ggacagtaaa aataggagaa atagtaatta
      481 aaaacagaag agtacctgac aataagaaaa tccagataga cattaaaaag gaaaaggtaa
      541 tattagaata tcctgatgga actacagagc aaataacagc ataaatagct gatcaatata
      601 gaaatagaag atcaccaatt aaaacacaat tcatagataa tattcctaaa aatcaattaa
      661 cttgcttata ttcattcaat caagtactat attttcattg actaactttg ttgtatgtct
      721 tctttaatat ttctataaat attcattatg tctgaattat tcgtcagtaa tttataggac
      781 catattgtga tgtaacgtaa atcgatagcg atgatatata actataaaca atccagaaat
      841 aatttgagac aaactgttga agattatatt gtaaacgaac ttggaaagca tggcacatta
      901 tgctttcctc ttatagactc ggagaacttt ttaaatgcat cttctatcgc caaaaaggct
      961 gaattaatgg gcgcctctgg catcttggtt ggtggatcct cagcagtcga tcaacttgaa
     1021 ttggcagaga tagtttcaag tattaaatca cgaatccaaa ttccagtaat attgtttcct
     1081 gggaatgtca ctggaatatc gccaaaagct gatgctattc tcttcagttc cctacttaat
     1141 tcagagaatc cttactttat tacggaagca caggcattgg gagcccttgc tgtaaaaaaa
     1201 tatggaattg aaccattgcc aaccggttac ttgattatcg gtgagggtac tactgcatgg
     1261 tttgtcggac gagctcgtgc cattcctttc aataaatcag gaatagctat tatgtattcc
     1321 ctagctgctc aatatttggg catgaggttt ttatatctcg aggccggttc tggtgccgta
     1381 cagaatgtct caccccagat ggtatcagca gtaagaaaac actatgaagg catacttatt
     1441 gtaggtggtg gaatccgtac cccagaaacg gcaaaggaaa tagctgatgc cggggctgat
     1501 gctattgtaa ttgggacaat gattgaaaaa gagggaaatt gggaagatag gttctcctca
     1561 attataaacg caataaggag atgataataa ctatatcatg acaattataa gcgatgcaga
     1621 aatccttcta aaggaggtta atatgcctga gtattacctc aattatcaac acgaaatttt
     1681 aaacaatgta caaagaaact ttgaattagc tacaaaagca cgaaggatgg gactagatgt
     1741 ttctgacaga gttgagccaa agattgctta tgatctagca gacagagttg caaaaatgca
     1801 taatatagat attgccgaca gattacgtgc cttactctca cataccacta aagagaaggc
     1861 aacacttaaa attgctgagg agattgctct aggagaatac ggtataggcg acctcagaac
     1921 taggctggat aatgctgttc gtgttagtct agctgtaatg acagaaggtg taacagttgc
     1981 cccattgcaa ggaattgctg atgtgcagtt aaaaaataat gcaaacggta gtcagtatct
     2041 ctcagtatct tttgccggtc ctataagatc tgcgggaggg actgaggctg ctcttactat
     2101 gttaatagcg gatcatataa gaaaagttgc tggtgtagat aaatacattg caaattcata
     2161 tgacgatgaa acaggaagat ttgtcgaaga attgagaatt tatgaacgcg aagttggcaa
     2221 ttttcagttt aaaatattgg atgaagatgt agttaaatgt ataaccaatt taccagtaga
     2281 gcttgatggt gtcgatactg atccagtaga agtagtagga cacaggggga tgaatagaat
     2341 ttctactgat agggtacgtg gtggtgctct tagagtaatg aatgacggtc taataggtcg
     2401 aagcagaaaa ttacttaaac ttgttgaaat acttaaacta gatggatgga attggctcaa
     2461 tgatctcaaa ggagcaattc agacaggaga tgacgatgca gctcatcata gaatgtctga
     2521 agtgattact ggtagacccg tactttcgat gactaagaaa atcggtggct tcagattaag
     2581 atacggtcga tgttgcaata ctggttttgc aactattgga attcaccctg tcgtgcctat
     2641 tttgttaaac tacgctattg ttgtaggaac acaaataaaa atggatgtac caggaaaggc
     2701 atcaactata gcacttgtag atacaattga gcctccacta gttagacttg atgatggcag
     2761 tgtagtgcaa gtatcaagtg tagatcaggc tatgaaaatt cgatcaagag ttgataaaat
     2821 actttatctt ggtgatattc taataagtta tggcgatttc cttgaaaata atgctcaact
     2881 gctttctgcc agttatgttg aagaaatttg ggctttacaa ttgcattcaa gattgctgac
     2941 attatcctct tcttctgact tcccgatggg agaaataaaa aatgagaggc tgattcaact
     3001 gacaaaggat ccatttacaa tctttccaac agttgaagag gcatttgaaa tcagtaaaaa
     3061 atttgatatt cctcttcatc caaaatattc attttattgg gattctctca gtatagatga
     3121 ggttttattg ttaaaggaaa aattttgta
//
LOCUS       DATABJ010000044         4156 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1994426, whole genome shotgun sequence.
ACCESSION   DATABJ010000044 DATABJ010000000
VERSION     DATABJ010000044.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4156)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4156)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4156
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1994426"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            293..1702
                     /locus_tag="VHF44_00785"
     CDS             293..1702
                     /locus_tag="VHF44_00785"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEX2124116.1"
                     /translation="MRLIMKFGGTAIDSGQKVIHVANLIKSYRYKKYDEMVGVISAVR
                     GLTDEILSISNSVKRGDKISIIDFIKRTRMAHLAIIDESISDRKLKDEARIVITKLID
                     ELQDILEGIVLLAEVTPKSLDYLLSFGERLSTPIVSFALRDIGLTSDYIIGKEVGILT
                     DSNFGEARPLMDTTKLRVAHKIEPLLREGIIPIVTGFIGADQNGNITTLGRGGSDYTA
                     TIIAASINADEIWLWSDVDGLMTADPKIVSSAKVLKEVSYAEAMEMALFGAKYIHPRA
                     LEPILDSKIPLIIRNTFNVKHEGTIISHNPSMTSKKIVKSISAIRHTALIDVSGGGMV
                     GTPGTAAKIFDTLAKNRVNIMMISQSPSESSISMVVRKSDLDKATTTFELNLLGKIIK
                     QLNVNEDVAIIAVVGSGMRGIKGVAAKVFGSVARRNINVMMIAQGSSELNLAFVVNDN
                     DCEQAVRALHDEFGLANIE"
     gene            1880..2704
                     /gene="cobJ"
                     /locus_tag="VHF44_00790"
     CDS             1880..2704
                     /gene="cobJ"
                     /locus_tag="VHF44_00790"
                     /EC_number="2.1.1.131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030789 - precorrin-3B
                     C17-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-3B C(17)-methyltransferase"
                     /protein_id="HEX2124117.1"
                     /translation="MSKTGGKLFVVGVGPGHHDHMTYRAKQVIEQSEIIVGYDTYVSL
                     VEDLIVGKEVYRYAMTQEVDRANQAIGFAEQGKIVSLVSSGDPGIYGMIGLIYEILSE
                     KGWSKEKGIYVECVPGVSSLNSCSALIGSPLMTDFAVVSMSDLLVPWDIIVKRVEAAA
                     LGDYVTVIYNPASKKRIHQLRDTRDIFLKYRKSETPVAIVKGAYRESQAIVMTTLDRM
                     LEHQDMLGMITTVIVGNSSTFIYKGMMINPRGYRSKYDLVKEVPVTTSSTNNSSNS"
     gene            2932..3978
                     /locus_tag="VHF44_00795"
     CDS             2932..3978
                     /locus_tag="VHF44_00795"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEX2124118.1"
                     /translation="MDIQERLDLIKKDPTEEIVTTDELITLLQTVDSPRHYIGLEISG
                     ELHVGSLILTGFKINDFIKAKVHTTVFLADWHTYINNKLGGDWNKIKDISNYYSEAFK
                     FFCPSTSIIIGSDLYDNTDDYWENFIRFSKQMTLSRTVRSLTIMGRTEKENLDFSQLL
                     YPPMQSVDIKALNLDIVHAGMDQRKIHMLTREIFPRLGWKVPVSVHHHLLPGLSQPSK
                     LGFSEDSSEDLKISSKMSKSKPSSGIMIHDTEQTINEKINKAFCPPDVVEGNPVLELV
                     KYIVFHQFSEFVIERPSKYGGNISYNNYKDVEYDFIKSKIHPIDLKNATAIYINKIIE
                     PVRNHFKDRKPKFD"
BASE COUNT         1436 a          635 c          792 g         1293 t
ORIGIN      
        1 agaatattgt ctgagatatt tctatagtca cgaacccgtt aaaggtcgcg cactatttgg
       61 aaaaggagat gatttgctat atgtaatgtc aatgaagttt tattcttgat gatgttgtta
      121 taaaattcaa tggacagcgg catttatagg tctatgtgat tcctcaaatc tttttgtatc
      181 attttcttgg ttacttcaat taaccttatt atgaagaaat attcgactaa tatattaaaa
      241 attagacaaa agaagcatta atctttagga ggctagaatg tattgactta gtatgcgcct
      301 tataatgaag tttggtggaa ctgccataga ttctggtcaa aaggtgattc atgtagccaa
      361 tctgataaaa tcatatagat ataagaaata tgatgaaatg gtaggcgtaa tttctgctgt
      421 caggggctta acggacgaaa tactatccat ttcaaacagt gtaaagaggg gagataaaat
      481 ttctataatc gatttcatta aaaggacacg tatggctcat ttggccatta ttgatgaatc
      541 aatctcagat agaaaattaa aagatgaggc acgaattgta attacaaaac tgattgatga
      601 attacaagac atacttgaag gaatagtgct tctagctgaa gtcactccaa aatcattaga
      661 ttatttattg tcatttggag aacggctatc aactccaatc gtttcgtttg cattacgtga
      721 cataggatta acatccgatt acattatcgg aaaagaagtt gggatattga ctgattctaa
      781 tttcggtgaa gctcgtccgc ttatggatac tacaaaactt cgtgttgctc ataaaattga
      841 accattactg agagaaggta taatccctat agtaactgga tttattggtg ccgaccagaa
      901 tggcaacata acaacattgg gtcgaggagg ctctgattac acagctacaa taattgcagc
      961 aagtatcaat gctgacgaga tttggctttg gagtgacgtt gacgggttaa tgacagcaga
     1021 tcctaagatt gtgagctctg caaaagtact caaagaggta tcctatgcag aagcgatgga
     1081 aatggcgttg tttggtgcaa agtatattca tccacgcgct cttgaaccta ttttagactc
     1141 aaaaatccca cttataatac gcaatacatt caatgtaaaa catgaaggta ccattatctc
     1201 acataacccc agcatgacat ctaaaaaaat tgtaaaatcc attagtgcta ttcgccatac
     1261 ggctttgatt gatgttagtg gaggtggaat ggtggggacg ccaggaaccg ctgcaaagat
     1321 cttcgataca cttgcgaaaa atagagtaaa tattatgatg atctctcaaa gtccttcaga
     1381 atctagtata tcaatggtag taaggaaaag cgacctcgat aaagcaacaa ccacatttga
     1441 gttaaattta cttggaaaga tcataaaaca gctaaatgtc aatgaagatg ttgcgataat
     1501 tgctgttgta ggatcaggca tgcgtggaat aaagggtgta gcagcaaaag tatttggttc
     1561 tgttgcaaga agaaatatca acgttatgat gattgctcag ggatcctccg aactaaattt
     1621 ggcttttgtg gttaatgata atgattgcga gcaggcagtt agagcattac acgatgagtt
     1681 tggacttgcc aatatagaat agaataaata atttgcgatt gattgtttga tggttataaa
     1741 aatattatta ttattatgat atagttcgtt atacaggtca tacaaaccgc caaatgactg
     1801 tcttttaata agagtgtcga tgatgtacag ccttttgtat gaaaaaagat aaattctatc
     1861 ttatccccag tcagatagaa tgagtaaaac tggtggtaaa ttatttgttg ttggtgttgg
     1921 tcctggtcat catgaccata tgacatatag agcaaaacaa gtaatagaac aaagtgaaat
     1981 tattgttggt tatgatacat atgtatcttt agttgaggat ttaattgttg gtaaagaagt
     2041 gtatcgttat gccatgacgc aggaggtaga tagagcaaat caagcgatag gttttgcaga
     2101 acagggcaaa atcgtatcgc tagtatcatc tggagaccct ggcatatatg gaatgatagg
     2161 cttaatctat gagattcttt cggagaaagg atggagtaaa gaaaaaggaa tctatgtcga
     2221 atgtgtgcca ggagtttcgt cattgaattc ttgctcagct ttgattggtt ctccattaat
     2281 gactgatttt gctgtagtta gtatgagcga tttacttgtg ccatgggaca taattgtaaa
     2341 gcgggtagaa gcggctgcct taggagatta cgttactgtt atttacaatc cggctagcaa
     2401 aaagcgcata catcaactaa gagatactag agacattttt ctaaaataca gaaaatcaga
     2461 aactcctgta gcaatagtta agggagcata tagagaaagc caagcaatag ttatgaccac
     2521 tctagacaga atgctagaac atcaagatat gcttggtatg attacaacag taatagtagg
     2581 taattcatct acctttattt acaaaggtat gatgataaac ccgagaggat atagatcaaa
     2641 atatgatctc gtcaaagaag ttcctgtcac tacgagttct actaataaca gcagcaattc
     2701 ctgacttttg ttatttttgc aataattctg taattgcaat tggaaatatc tagaccaaat
     2761 ataagatgca atcaagaaaa attattctat agctataata tagaatatct tggatatgtt
     2821 tctattagaa gattgaattt acactgaaca aatttatttg tttatgagag tattaaccta
     2881 tctatttgag tgaaaaaatt aataggcatt acttaccgcc cacttttata aatggacata
     2941 caagaacgtt tagatcttat taaaaaagat cctactgaag aaattgttac cacggatgag
     3001 ttaataactc tattacaaac tgttgactca ccaagacatt atattggtct agaaatttct
     3061 ggagagctcc atgttggaag tcttatatta actggtttta aaattaatga ctttattaaa
     3121 gccaaggttc acacaactgt ttttttggct gattggcata cctacataaa caataagcta
     3181 ggtggagact ggaataaaat taaagatatc tcaaattatt attctgaggc attcaaattt
     3241 ttctgtccta gcacaagtat aataatcggc agtgaccttt atgataatac agatgactat
     3301 tgggaaaatt ttatacgttt tagcaaacaa atgactttat ctagaacagt acgctctttg
     3361 acgatcatgg gtaggactga gaaagaaaat cttgattttt ctcagttgct atatccgcct
     3421 atgcaatctg ttgacatcaa ggcacttaac ctggacatag tccatgcagg aatggatcag
     3481 agaaaaattc acatgctgac aagggaaata tttccaagat taggatggaa ggttccagtt
     3541 tccgtacacc atcatttgct gccagggctt tctcaacctt ccaaattagg attttcagaa
     3601 gattcttctg aagacttaaa aatatcaagt aaaatgagca agagcaaacc ctcaagtggg
     3661 attatgattc atgataccga gcaaactatt aacgaaaaga tcaacaaggc tttttgtcct
     3721 cctgatgttg tagaaggtaa tccagtcctt gagctagtca aatatattgt ctttcaccaa
     3781 ttttctgagt ttgttattga gcgtccttca aagtacggtg gaaacatttc atacaataat
     3841 tacaaagatg ttgagtatga cttcattaaa agtaaaatac atccaattga tctgaaaaat
     3901 gctacagcta tatacataaa taaaataatt gaacctgttc gtaatcactt taaggataga
     3961 aaaccaaaat ttgattaaat attcttaaga acctaaaaat caaacaatgt tctgcaatta
     4021 tggcatcacc gctatattat tatagataat catacaattc cttgttatct tcttgtttaa
     4081 taatcataag taggctattt aattgcaaat tttataataa aaataaataa atatatatat
     4141 atcaatacat tttgta
//
LOCUS       DATABJ010000045         5727 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_909557, whole genome shotgun sequence.
ACCESSION   DATABJ010000045 DATABJ010000000
VERSION     DATABJ010000045.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5727
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_909557"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(205..1173)
                     /locus_tag="VHF44_00800"
     CDS             complement(205..1173)
                     /locus_tag="VHF44_00800"
                     /EC_number="1.2.7.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018491 - 2-oxobutyrate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0019164 - pyruvate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0047553 - 2-oxoglutarate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     beta"
                     /protein_id="HEX2124119.1"
                     /translation="MALKLADYKTDIHNDWCPGCGDFGILNAIQMALFDMQVPRHRTA
                     IFSGIGCSGKTPHFIHTYGIHTLHGRVLPFAQGAKLSNPELEVMAVGGDGDGLGIGAG
                     HFIGAGRRNVDMVYIIFNNGVYGLTKGQAAPTLKLGMKTKSLTQPNVNNSVNPISLAL
                     VAGFTFIARGYSYDVRHLKEIIKKAIEHKGLAFLDVLQPCPTYNDINTKEWYQGLDNI
                     DSETNKQIPRTYKIEETGYDGKVHEADDINDKMAQVIQKSTEWGNKIPIGIFYQNEHI
                     PTYQERILARVPNYIENPPSKQAIKDENNKSVSGIDKLLAELKVDK"
     gene            complement(1163..3127)
                     /locus_tag="VHF44_00805"
     CDS             complement(1163..3127)
                     /locus_tag="VHF44_00805"
                     /EC_number="1.2.7.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0018491 - 2-oxobutyrate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0019164 - pyruvate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0047553 - 2-oxoglutarate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxoacid:ferredoxin oxidoreductase subunit
                     alpha"
                     /protein_id="HEX2124120.1"
                     /translation="MTISKTTNSLTWVIGGAQGSGVDSAANIFSRACAQGGLHIFGNR
                     EFYSNIKGEHSYFTVRVSEKPIRSHVDNIDILASFDAETVFRHADKVTDGGAIIYDSE
                     LVNTTIQDVPTIDEIASERISTMLEKAGKPLTIQGMLDYAKDNGAQLYKIPYLKVLKE
                     FAEKINDTSLSKFTRMVNVMALSASMAILNFDSEVLANAIRHVFRAKPRVAEINISVA
                     NYAYNYSKSEFDPSKVRFIIRCRHPSADTILAQGNQSSGLGKIVAGCKFQTYYPITPA
                     SDDSEFLESNQIIEQRNGHNGSLVVLQTEDEIAAIAMAIGGALTGVRSATATSGPGFS
                     LMTEALGWAGMNEVPLVVSLYQRAGPATGLPTKHEQGDLLFAVNAGHGEFPKIVFASG
                     DIEESFYDTIKAFNFAEKYQMPVIHMLDKAIANSIMTCKIFNPYKVTLDRGQLLESVA
                     PSTETGIAGHYLRFKLSENAISPRIPLGTENGIFWNTGDEHTEEGHITEDPEMRLKMM
                     NKRMSKLDVALKEISNEDKAIAYGEDDPSSGLTIISWGSTKGAILDAMDRLSYDGKKI
                     KFVQVRLIHPFPTEVVEKMLVNTKVLVDIEMNYSSQLALLVKQNLKREIDYSIVKYNG
                     RPMSSSEIYNAIMHIINGSASRRIVLEIGT"
     gene            complement(3195..3359)
                     /locus_tag="VHF44_00810"
     CDS             complement(3195..3359)
                     /locus_tag="VHF44_00810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124121.1"
                     /translation="MSDNVKQQQQASNNDGTSCDYCGNPMEACMCVCPYCGELNGCEC
                     CLYDAVTGGG"
     gene            3589..4563
                     /gene="pdxS"
                     /locus_tag="VHF44_00815"
     CDS             3589..4563
                     /gene="pdxS"
                     /locus_tag="VHF44_00815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HEX2124122.1"
                     /translation="MTISLVANKLEPKGIKLDKLENTKIVRGTTLIKRGFAHMQKHGV
                     IMDVTNVEQAQIAEDAGAVAVMVLDKLPYDVRKAGGVARTASVKVIQDIMDAVTIPIM
                     AKCRIGHVWEAKVLEVTGVDMIDESEVLTPADEVSHIWKWDYTTPFVNGAKNLGEALR
                     RIEEGCAMIRTKGEPGTGNVAEAVTHIKMVNNSIRHISSMYHGLEDNQGLIKTARELN
                     VSFQLVEETARLGRLPVVNFAAGGISTPADAAFLMNLGCDGVFVGSGIFKADDPSQRA
                     RSIVLATTYYDNPQIVMEAQKMVDEKKSMLGLDTKNLELKMQERGPSN"
     gene            4560..5159
                     /gene="pdxT"
                     /locus_tag="VHF44_00820"
                     /pseudo
     CDS             4560..5159
                     /gene="pdxT"
                     /locus_tag="VHF44_00820"
                     /inference="COORDINATES: protein motif:HMM:TIGR03800.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0042823 - pyridoxal phosphate biosynthetic
                     process [Evidence IEA]"
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
     gene            complement(5203..5323)
                     /locus_tag="VHF44_00825"
     tRNA            complement(join(5203..5247,5264..5277,5298..5323))
                     /locus_tag="VHF44_00825"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5265..5267),aa:Leu,seq:taa)
BASE COUNT         1727 a         1069 c         1087 g         1844 t
ORIGIN      
        1 taagttgaat acatggacat atagatggat ggctgcatgg agtaaatggg actgatctaa
       61 tccccttcct ttattttatt ttattttcaa attctaaatt attaataatc atcatcaagg
      121 aacaactttt tttatcgaat aactgtaaat aataaaatta gttttaatcc aaataattat
      181 tcctagcaga tatttttcaa tttttcattt gtcaactttt agctctgcta aaagcttgtc
      241 aataccagag acagatttgt tattctcatc ttttatagct tgtttagatg ggggattttc
      301 tatatagttt ggtactctag caagtattct ctcttgataa gtcggtatat gttcattttg
      361 atagaatatg cctataggta ttttgttgcc ccattcagtc gatttttgaa ttacctgtgc
      421 cattttatca ttaatgtcat ctgcttcgtg tactttgcca tcatatcctg tctcctctat
      481 cttgtatgtt cgtgggatct gcttattcgt ttcagagtca atattgtcca atccttgata
      541 ccattctttt gtgtttatgt cgttataagt tggacacggt tgcaaaacgt ccaaaaaagc
      601 aagacctttg tgctcaattg cttttttgat gatctctttt aaatgtctga catcgtatga
      661 atatcccctt gcaatgaacg taaatcctgc cactaaagcg agtgatattg gattaacaga
      721 attattgaca ttaggctgtg taagagactt ggttttcata cctaatttta aagtaggtgc
      781 agcttgacct ttcgttagac cgtagactcc attattgaat ataatataaa ccatatctac
      841 atttcttcta cccgcgccta taaaatggcc agcaccaatt cctagaccat cgccatctcc
      901 tcctacagcc ataacttcta gttctggatt agacaacttt gcaccctgcg cgaatggtaa
      961 aactctgcca tgtaacgtat gtattccata tgtgtggata aagtgcggtg tcttaccgga
     1021 acaacctata cccgaaaata ttgcagtgcg atgacgagga acttgcatat cgaataaagc
     1081 catttgaata gcatttaata tgccgaaatc tccacagcca ggacaccaat cgttatgtat
     1141 gtctgtcttg tagtctgcta atttaagtgc caatttctaa cacaattctc cttgatgcgc
     1201 ttccatttat tatatgcatt atagcattat aaatctcact tgaagacatt ggcctgccat
     1261 tgtattttac aatactatag tcaatctcgc gctttagatt ctgttttaca agtaatgcca
     1321 attgcgatga ataattcatc tcaatatcta ccaagacttt tgtattgact agcatttttt
     1381 ctactacttc tgtcggaaat ggatgtatca atcttacctg aacgaatttg attttctttc
     1441 catcatatga caatcgatcc attgcatcta gaatcgcacc cttggtcgaa ccccaactaa
     1501 ttattgtcaa acccgatgat ggatcatctt cgccataggc tattgctttg tcttcattgg
     1561 atatttcctt taaagcgaca tctagtttac tcattcgttt attcatcatt ttaagacgca
     1621 tttccggatc ttctgtaata tgaccctctt ccgtgtgttc atctcctgta ttccagaata
     1681 ttccattttc agtcccaagg ggtatgcggg gagaaatcgc attttcactt aacttgaatc
     1741 tcaaatagtg accagcaata cctgtctctg tcgatggagc aacactttct aataattgcc
     1801 ctctatctag tgtaacctta tacgggttga atattttgca tgtcattatg ctgtttgcta
     1861 tggctttgtc cagcatatgg atgactggca tttgatattt ttctgcaaag ttgaatgctt
     1921 ttatggtgtc gtaaaaactt tcttcaatat ctccagaagc gaaaacaatt tttggaaatt
     1981 ctccatgtcc tgcatttact gcaaataaca aatcgccttg ttcatgtttg gttggaagac
     2041 cagtagcagg gccggcccgt tgatataatg agacaaccaa tggaacttca ttcatccctg
     2101 cccaacctaa tgcttctgtc attagcgaaa agccaggtcc tgaagttgca gtggctgagc
     2161 gcactccagt taaagccccg cctattgcca tcgcaatagc agctatttca tcttcagttt
     2221 gaagaactac tagagaacca ttatgaccat ttctctgctc aattatctga ttagattcta
     2281 agaattcgct gtcatcactt gctggggtta tgggataata tgtttgaaac ttgcatcctg
     2341 ccacaatctt tcctaaaccg gatgactgat ttccctgcgc cagtatcgtg tctgcggaag
     2401 ggtgcctaca tcttataatg aacctgactt tagatggatc aaattctgat ttactataat
     2461 tataagcata attggctacg gagatattga tttctgcgac tctgggtttt gctcgaaaaa
     2521 catgtcttat tgcgtttgcg agtacctcag aatcaaaatt taaaattgcc attgatgctg
     2581 ataaagccat aacatttacc attcttgtaa acttgctcag agaggtgtca ttgatctttt
     2641 ctgcaaattc ttttagtacc ttaagatatg gtatcttgta gagctgagct ccattatcct
     2701 tagcataatc cagcatccct tgaatagtca gtggcttacc agctttttcc agcattgtag
     2761 atattctttc agaggcaatt tcatcaatag tagggacatc ttgaatagtc gtattgacta
     2821 actctgaatc ataaattatg gctccgccgt ctgttacttt atctgcatgt ctaaatactg
     2881 tttcagcatc aaaggacgca agtatatcaa tattatcaac atgagatcga ataggctttt
     2941 ctgatactct taccgtaaaa taactgtgtt cacctttaat gttggagtaa aattctcggt
     3001 ttccaaagat atgcaagccg ccctgcgcac aggctcgtga gaatatatta gctgcagagt
     3061 ctactccact tccttgagct cctccaataa cccatgttaa agaattagta gtttttgata
     3121 tagtcatcta gattgatttt cgcaagacga gcttttaatg atttagaaaa gagaatgtta
     3181 ttttaattat tttcttagcc accgccagtt acggcatcat acaggcaaca ttcacaacca
     3241 ttcaattcgc cacaataagg acatacacac atacaggctt ccattggatt gccacaataa
     3301 tcgcagctag ttccatcatt gttagatgcc tgttgttgtt gtttaacatt atctgacaat
     3361 ttaatatata ttggtgatat cttcaaagta atatacttta cacatttgag ttagcaggag
     3421 atctttacat cattatcaag acatttaaaa aaatgaaata aagaaaggag acagtttaga
     3481 tatatgattc catattttgt cttataggta gttaatcaca ataataaaac taatgttgaa
     3541 aagcaagaaa aactaatctc tatatagagc gaactaagaa gttaagttat gacaatatct
     3601 cttgtggcaa ataagcttga gcccaagggc ataaaattag ataaattaga aaatacaaag
     3661 atcgttcgag gcactactct gatcaaacgt ggttttgctc atatgcagaa gcatggagta
     3721 ataatggatg tcactaatgt cgaacaagca caaattgcag aagatgctgg cgcagttgct
     3781 gttatggtat tggataaact accctatgac gtgcgaaagg ctggaggggt cgctaggaca
     3841 gcaagtgtta aggtaattca ggatattatg gatgctgtta ctattcctat tatggcaaag
     3901 tgcaggattg gtcatgtgtg ggaggccaaa gtacttgaag taacgggagt cgatatgatc
     3961 gatgaaagtg aggttttaac tccagcagac gaggtcagtc atatatggaa atgggattac
     4021 acaacaccat ttgtaaatgg agcaaagaat cttggtgagg cattaagaag aatagaagaa
     4081 ggatgcgcca tgattagaac aaaaggcgaa ccaggtactg gtaacgttgc tgaagcagtc
     4141 acccatatta aaatggtgaa taatagtatt cgtcacatta gttcaatgta tcatggtctg
     4201 gaggataatc aaggattaat taagactgcg agagaattaa acgtttcatt tcagcttgtt
     4261 gaagaaactg cacgtctggg cagattacct gtagtaaatt ttgcggcagg tggaatatct
     4321 acccctgctg atgcagcctt tctaatgaat ctcggatgtg atggtgtctt tgttggttct
     4381 ggtatcttca aggcagatga tccgtctcaa agagctaggt ccatagttct tgctactaca
     4441 tattatgata atccacagat tgttatggaa gcacagaaaa tggttgatga gaaaaaatct
     4501 atgcttggac ttgatacaaa gaaccttgaa ttaaagatgc aagaacgagg accttcaaat
     4561 tgaatgatga aataatcatc gggatattag cagttcaagg tgacattgaa gaaaatattg
     4621 ctgccactaa tgaagcacta cggaatatga aagtaaatgg gagtgcaaga cctgttcgct
     4681 actctaagga aatagaacaa gttgatggct tgataatacc tggaggagaa agtacggtaa
     4741 taagtagtct agttacatta catgaagcaa catttcaggc aattagaaga cgtatttcca
     4801 ctggcatgcc tgcaatggga tcatgtgctg gaatgattat gctttcaaaa cgtgcttacg
     4861 atagagtaat cggtgagaca aagcaacaat tgataggaaa tttggatatt gtgatagaga
     4921 gaaatgcatt tggaagacaa aatgattctt ttgaaactga tctctatata ccaatgctgg
     4981 gtaaggacct atacaaaggc attttcatac gatctccagt tataactgaa ttcggaaatg
     5041 gagttgatgt cattgccaaa tttaacgata aaatcgttgc tgtaattcaa aagaacatta
     5101 tcggaactgc tttccatcct gaattgtcgg gtgatgatag gctccacaga ctctttatca
     5161 ataaagtgct agagttcagg caaaatcagc aaaattatga ggtgcggggg gtgggattcg
     5221 aacccacgaa cccctaaggg acgtgatcac ccatgtttaa gatcttaagt cccgcgtctc
     5281 caattctata ttagcctatt tggccaggct ctacaacccc cgctttattt attggtcagg
     5341 ttaatttgga tactgtaatt aaaccttaca cgataaatat cctaattcta tttacaagtg
     5401 aactaagata gactctttca ttatggtacg gtttggtgta tttggattgt gaacgaaaat
     5461 atgacactgc ttcggattgt tgttttattt actttaccat tctacaacat tatagaataa
     5521 catgaacgaa aaactactga cagctagatt aataaataca aataatagca aattagttaa
     5581 ttagccgatt atcggttgat tattcctata atctatagaa tacaattagt gaaaatgtat
     5641 ggtcttattg catcgtaggc gccttggtag ctcagcctgg tagagcgttg ccttggtaag
     5701 gcaaaggtcc cgggtccaaa tcccggc
//
LOCUS       DATABJ010000046         3771 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1995293, whole genome shotgun sequence.
ACCESSION   DATABJ010000046 DATABJ010000000
VERSION     DATABJ010000046.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3771)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3771)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3771
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1995293"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..431
                     /locus_tag="VHF44_00830"
     CDS             <1..431
                     /locus_tag="VHF44_00830"
                     /inference="COORDINATES: protein motif:HMM:NF020645.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cell division control protein Cdc6"
                     /protein_id="HEX2124123.1"
                     /translation="RKAIDLLRVAAEIAEREKADKVEEKYIRLAQEKIEKDTNFEILK
                     NSTTHTKIIIMAIMKSKIGNTGEVYEIYSSLCRHTEQEPLTQRRITQIISELDQLGLV
                     ISDIMNQGRYGRSQRIKITVPFLTIKEALKDDPILSALLI"
     gene            complement(432..2030)
                     /locus_tag="VHF44_00835"
     CDS             complement(432..2030)
                     /locus_tag="VHF44_00835"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed DNA polymerase II small subunit"
                     /protein_id="HEX2124124.1"
                     /translation="MALQREISNAISYATSKGYQMHPDAFAMLKGLDNDVVKIVQDII
                     KMKIKQNENSLIKVDDIRNHINPEEDKVAVIDFEDIGKIDDTKINRLSTTTTTTAAVI
                     EYSSSFEQNSHKIILDPTPNINTGEGVEGYAALFRSRFEKSHRILALRPESKRIIQIA
                     SVKHNTNNAKAAKSYSSRTEGNFVRNPSSVVAGLLMSKRSKKNGIELVIDDYSGTLSA
                     LAVTEELKKLAMTLTLDQMVMLEIDNNNKSTQGFTIKNLASPDIPDHVPNRSKAEYYA
                     VLISDLHVGSKYFMEIEFMRFLTWLSSSEDELVRKIRFLCIGGDLIDGIGIFPNQDKE
                     LLELNTSKQMAHVIDLLAKIPKHIKVFIIPGNHDPGRRSLPQPSLPRKDADKLYSFEN
                     FTMLGNPAFLELNGVKVLMYHGQSLDDIIATTPGLSYSKPAEAMKVLLKARHLSPIYG
                     QRTPIAPEQEDMMVISEVPDVFHSGHVHVIDVKNYRGTLIVNSGTWQAQTKFQQTMGI
                     VPTPGFAILINLATLQPFQMDFNH"
     gene            2156..2662
                     /locus_tag="VHF44_00840"
     CDS             2156..2662
                     /locus_tag="VHF44_00840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="stage II sporulation protein M"
                     /protein_id="HEX2124125.1"
                     /translation="MAFGAIAFLLAYSGGAEVNINKEEAEDVKGEFIKKIEGIDQNGI
                     FINNVMIALVMFIPIVGIGLGIFSGFSTGLVFNALAETSSYLQNVPPLAILLTPFGIM
                     EVFAYSLAISRSGMLTYNLVKKKPWKEYAIHTVIEIGIIVILLIAGAVIEWQMIMQLD
                     GSANLPDI"
     gene            2896..3135
                     /locus_tag="VHF44_00845"
     CDS             2896..3135
                     /locus_tag="VHF44_00845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124126.1"
                     /translation="MTEHPEIIDQWLQKLHREYINNKKICDFENDPTACFNLGLYEEF
                     ERNLKSWEEGGFIKIMLPVKKAIRVSKSPIFSLAK"
     gene            complement(3306..>3771)
                     /locus_tag="VHF44_00850"
     CDS             complement(3306..>3771)
                     /locus_tag="VHF44_00850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX2124127.1"
                     /translation="NFSESEVVDRLFEIFGDDNVEIIPGISSIQMASAKSRVPLDKAY
                     IVTFHVTGDIEQKKSELVKAIIDGKSVILLPRPWSADPSKKFMQSDIALFLKKNGIDI
                     SNLTVWVFEYLTKDDKETVFKGKVVDLEEREFSDLSVMVIDQVKRQTYLHFD"
BASE COUNT         1221 a          629 c          666 g         1255 t
ORIGIN      
        1 caagaaaagc aattgatctc ttaagggttg ccgccgaaat tgccgaaaga gaaaaggcag
       61 ataaggtaga agaaaaatat ataagattag ctcaagaaaa aatagagaaa gatactaatt
      121 ttgagatatt aaaaaattct acaactcata ctaagataat aataatggca ataatgaaat
      181 caaaaattgg caatactggt gaagtatatg aaatttattc gtcattatgt agacatactg
      241 agcaagaacc acttacacaa cgccgtataa ctcaaataat aagtgagctt gatcaacttg
      301 gtcttgtaat aagtgatata atgaaccaag gacgatatgg tagatcacag agaatcaaaa
      361 ttactgttcc atttttaact attaaagaag cattgaaaga cgatccgatt ctctctgcat
      421 tattgatatg attaatgatt gaagtccatc tgaaatggct gtagggtagc cagattaatg
      481 agaattgcaa atcccggagt tggcacaata cccatcgtct gttgaaattt agtttgtgcc
      541 tgccatgtgc ctgaattgac gatcagggtt ccccgataat ttttaacatc tataacatgg
      601 acatgtcctg aatgaaatac atcaggaact tctgaaatca ccatcatatc ttcttgttca
      661 ggtgctatag gagtacgttg tccatatatc ggtgataaat gacgagcctt cagcaatact
      721 ttcattgctt ctgccggctt tgaataactt aaaccaggtg ttgtggcaat aatgtcatct
      781 aaactctgtc cgtgatacat caataccttt acaccattta attcgagaaa ggcaggattt
      841 ccaagcattg taaaattctc aaaggaatat aatttatcag cgtcttttct cggcaatgaa
      901 ggctgcggta gagaccttcg acctgggtca tgattgccag gaattataaa aaccttgata
      961 tgttttggga ttttagcaag caaatctata acatgtgcca tttgcttgct agtattgagt
     1021 tcaagcaatt ctttgtcctg attaggaaat attccgatac catcaattaa atctccgcca
     1081 atacataaga atctgatttt tcgtacaagt tcatcctcac ttgatgaaag ccaggttaaa
     1141 aatctcataa attctatttc cataaaatat ttactaccaa catgtagatc ggaaattaaa
     1201 actgcataat attctgcttt agatctatta ggaacatgat caggaatatc aggagaagct
     1261 agattcttta tagtgaaacc ctgggtagat ttattattat tatcgatttc tagcatgacc
     1321 atctggtcaa gcgtaagtgt catcgcaagt ttctttaatt cttcagtaac tgcaagtgcg
     1381 ctcaatgttc cactgtagtc atcaattact aattctattc catttttttt tgaacgcttt
     1441 gacattagca aaccagctac aacagaagaa gggttcctga cgaaattccc ttccgtcctg
     1501 ctgctgtatg actttgctgc ctttgcatta tttgtattat gtttcacaga tgcaatttgt
     1561 ataattcttt tactttctgg tcgtaatgcc aagatgcgat gagacttttc aaagcgacta
     1621 cgaaagagtg cagcataacc ttcgactcct tctccagtgt taatattagg agttgggtct
     1681 aagattattt tatgagaatt ctgctcaaaa gaagaagaat attctataac ggcggctgtt
     1741 gttgttgttg ttgttgatag tctattgatc ttagtatcat caattttacc aatatcctca
     1801 aaatcaatga cagctacttt atcttcttct ggattaatat gatttctgat atcatctacc
     1861 ttgataagag aattttcatt ttgtttgatt ttcattttga tgatgtcttg tactatcttt
     1921 acaacatcat tatcaagacc tttaagcatc gcaaaggcat caggatgcat ctgatagccc
     1981 ttgctagtgg catatgatat tgcgttagaa atttctcttt gtaaggccaa ggtgctgaac
     2041 tgattttact ttggatatca tatttaatta tatttctata attgacaaaa ctaattatag
     2101 aataaaatgt catatctgca cgttgcgttt taactttaaa cggcgcttta tatatttggc
     2161 atttggcgca attgcctttt tgcttgctta ttctggtgga gctgaagtta atataaacaa
     2221 ggaggaagca gaggatgtaa aaggggaatt tataaaaaaa atagaaggta ttgatcagaa
     2281 tggaatattc atcaataacg tcatgattgc acttgttatg tttattccca tagttgggat
     2341 aggattagga atattttctg gtttttctac aggactggta ttcaatgcac tggcagaaac
     2401 ctcttcttat cttcagaatg ttcctccact agcaatttta ctcacacctt ttggaattat
     2461 ggaagttttt gcttacagct tggcaatatc tagaagtggt atgcttacat acaatcttgt
     2521 gaagaaaaaa ccatggaaag aatatgctat ccatactgtt attgagattg gaattattgt
     2581 aattcttttg atagccggcg ctgtaattga atggcaaatg ataatgcaac tcgatggatc
     2641 tgctaatcta cctgatatat aatttttaat aaactatcta gtaaagcatt atttcttatc
     2701 attttcattg ttatgatata ttaattgtaa tgttataaag aaatagttta ataattcgaa
     2761 aatctatata ttacttatgt ctgaaatgct gaaggatgat tcacttgggc tggtcttacg
     2821 aggatatgac ctagttccca atgcctcact tgcaaccaag attgctgtct acactgctag
     2881 gttgtagaga ctattttgac tgaacatcct gaaataattg atcaatggtt gcaaaaattg
     2941 catagagaat acataaacaa taaaaaaatc tgcgattttg aaaatgatcc tacggcatgc
     3001 tttaatctag gattatacga agagtttgaa agaaatctta aaagttggga agaaggagga
     3061 ttcataaaga taatgctacc tgtaaagaaa gcgatccggg taagcaagag tccaatattc
     3121 tcacttgcaa agtagggtgt ttctgacaat actgatgctt gttagcacgt tccctcaatc
     3181 atttcaaatt tgattatgca gatttaatct gtgcctgtgc agcaagaagc cttataataa
     3241 ataatatttg ttcgaatagt tgatcaaatt tttgataaat agaaataagg aaataatgtc
     3301 tagtctcaat caaaatgcaa atatgtctga cgctttactt gatcgattac cataacagaa
     3361 agatcactaa attccctttc ttccaaatcg acgactttgc ctttgaagac agtttcttta
     3421 tcatctttgg tgagatattc aaaaacccag actgtaagat ttgaaatgtc aattccgttt
     3481 ttcttcaaaa ataaggcaat atctgattgc ataaatttct ttgagggatc cgcagaccaa
     3541 ggtcgtggta ataatattac actttttcca tcaattatag ctttgaccaa ttcagatttt
     3601 ttttgttcaa tatcgcctgt tacatgaaaa gtaacaatgt atgccttatc aaggggaact
     3661 cgggattttg ctgaggccat ctgaattgag ctaataccag gaataatttc gacgttatca
     3721 tcaccaaaaa tttcaaatag tctatcgact acttctgatt ctgaaaaatt g
//
LOCUS       DATABJ010000047         2021 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_910586, whole genome shotgun sequence.
ACCESSION   DATABJ010000047 DATABJ010000000
VERSION     DATABJ010000047.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_910586"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..312)
                     /locus_tag="VHF44_00855"
     CDS             complement(<1..312)
                     /locus_tag="VHF44_00855"
                     /inference="COORDINATES: protein motif:HMM:NF012492.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX2124128.1"
                     /translation="MTLKETKAEPLVREIFLKEGFKSLTAIQKKAIPVISRKINSLLV
                     APTGSGKTEAAIIPIFTQLSNYTIHHSGKIKAIYITPLRALNNDVLRRIIKYAESQNL
                     RV"
     gene            complement(293..481)
                     /locus_tag="VHF44_00860"
     CDS             complement(293..481)
                     /locus_tag="VHF44_00860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124129.1"
                     /translation="MAAEGIVNFDSYAWLAVGLFITGLLAAMVYEKSSSKTKQLKQQQ
                     QQQQKHQEVGSSSDIKRD"
     gene            566..1615
                     /locus_tag="VHF44_00865"
     CDS             566..1615
                     /locus_tag="VHF44_00865"
                     /inference="COORDINATES: protein motif:HMM:NF014610.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124130.1"
                     /translation="MSSNTVENSSKVRKKKNAKAVALLSGGLDSNLAVRMMLEQGVEI
                     EAVAIKTPFCDFDCGKGCGHRVKEVASELGVHLKTVYYGEEYLKMLKHPKYGYGSGMN
                     PCIDCRGMMYKTAKEYMEKIGADFVVTGEVLFQRPMSQNKRALHIIEEEAEMKGKILR
                     PLSAKHLTPTGAEKDGLVDREKLCNIKGRSRKEQIALAKYFNISDPPNAAGGCLLTDP
                     SFSRRIRDLMEHTKNIPSINDVELLKIGRHFRLSREAKLVVGRDEDENDMIDSMVMDS
                     DIKMEASECVGPRCILRSKEYDSKILNMAARIVLRYSDAPRENQSKVKVEINGYKEEI
                     SALPAKDTEFEGLRI"
     gene            1706..1984
                     /locus_tag="VHF44_00870"
     CDS             1706..1984
                     /locus_tag="VHF44_00870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HEX2124131.1"
                     /translation="MQTQKTPIYLKAITLRDMSDVASIKDDAKKQTILILRVTPLAQK
                     DVEGLRKAIDELYGYVQSIGGDIARLGEERVVLTPPGVKIWRGAYDLK"
BASE COUNT          665 a          309 c          433 g          614 t
ORIGIN      
        1 tactcgtaga ttttgagatt cagcatattt tatgattctt cgaagtacgt cattattcaa
       61 ggcgcgtagt ggagtgatat agattgcctt gattttaccg ctatgatgta tcgtatagtt
      121 agataattgt gtaaatattg gtataatagc tgcttctgtt ttaccagaac cagttggagc
      181 aacaagtaga ctgttaattt ttcttgaaat cactggtatt gctttttttt gaattgcagt
      241 tagtgatttg aaaccttcct ttagaaatat ttctctaact aacggttcag ctttagtctc
      301 ttttaatgtc agatgaagat cccacttctt ggtgtttttg ctgctgctgc tgttgttgtt
      361 tcaactgttt tgtctttgaa cttgattttt cataaaccat tgcggcaagt aggccagtga
      421 taaacaatcc tacagcaagc catgcatatg aatcaaagtt cacaattccc tcagctgcca
      481 tcttttgatt ctgttctgag acagcaataa atatattcgc ctcaagaatt aactttaata
      541 atagtaaaat aatcccaaga taataatgtc aagcaatact gtagaaaatt cctccaaagt
      601 caggaaaaag aagaatgcaa aggcagtggc attattgtcc ggcggattag acagtaattt
      661 agctgttcgt atgatgctag aacagggcgt tgagattgag gcagtggcta tcaagactcc
      721 attttgtgat tttgattgtg gaaaggggtg cggtcatcgt gttaaagaag ttgcctcaga
      781 attaggcgta catttgaaga ccgtttatta tggtgaagaa tatctaaaaa tgctgaaaca
      841 tcctaaatat ggatatggat ctgggatgaa tccatgtatt gattgtagag gaatgatgta
      901 taaaacggca aaagaatata tggaaaaaat aggggcagat tttgtcgtta ctggtgaagt
      961 tctatttcaa agaccaatga gtcagaataa acgtgctttg catataatag aagaagaggc
     1021 agaaatgaaa ggtaaaatct taaggcctct ttcagcaaaa catctaactc ctacaggagc
     1081 tgaaaaggat ggattggttg accgagaaaa attatgtaat atcaagggaa gatcacgcaa
     1141 agagcaaatt gctctagcaa aatattttaa cataagtgat ccacccaatg ccgcaggggg
     1201 atgcttgtta acagatcctt cattttcaag aagaattaga gatctcatgg agcataccaa
     1261 aaatattcca agtatcaacg atgtggaact cttgaagatc ggaagacatt ttagattgtc
     1321 tagggaagca aagctggtcg taggcagaga tgaagatgaa aacgatatga ttgattctat
     1381 ggttatggac agtgatataa aaatggaagc cagtgaatgc gtaggaccta gatgtattct
     1441 gagatctaaa gaatatgata gtaagatatt gaatatggcg gcaagaattg tgttacgtta
     1501 ttctgacgct cctagggaaa atcaatctaa agtaaaagtt gagatcaatg gctataaaga
     1561 agaaatatcg gctttgcctg caaaagatac cgagtttgaa ggattacgaa tttaaaatca
     1621 accagtctgt taatgtcttt tgaccagcat aactatttgc tgattccttt ggatttgtct
     1681 ataattatat aggataaatg gttccatgca gacacaaaag acaccaattt atttgaaagc
     1741 aataactctg cgcgatatga gcgacgtagc cagtataaaa gatgatgcca agaagcaaac
     1801 aatccttatt ttacgagtta caccattggc acagaaagat gtagaaggct tacgtaaggc
     1861 aatagatgaa ctatatggat atgttcagtc aattggcggc gatatcgcga ggttgggcga
     1921 ggaaagggtt gtattaactc caccaggtgt aaaaatttgg cgcggtgcat acgacttgaa
     1981 ataattttta tttctcttct tcaatcgtaa atttcatttt t
//
LOCUS       DATABJ010000048         2572 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_35988, whole genome shotgun sequence.
ACCESSION   DATABJ010000048 DATABJ010000000
VERSION     DATABJ010000048.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2572)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2572)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2572
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_35988"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            274..465
                     /locus_tag="VHF44_00875"
     CDS             274..465
                     /locus_tag="VHF44_00875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124132.1"
                     /translation="MKQQRQKQQKTSKPRKNYDYNKPIGKCIVCYFLSGWHCYDCDND
                     FCGAHFHDHKERNLCIKVA"
     gene            472..810
                     /locus_tag="VHF44_00880"
     CDS             472..810
                     /locus_tag="VHF44_00880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124133.1"
                     /translation="MYIDVVCWFDDSGTELCKNYKISWLDLKKEISNLLKENEILLDE
                     TIFEPSRRGTNTAIIQPLAGSIKVRGDGSARTDYRSIELFNTSDIRRAFIAIDRVTVG
                     VIYPPCSLIR"
     gene            1071..1841
                     /locus_tag="VHF44_00885"
     CDS             1071..1841
                     /locus_tag="VHF44_00885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124134.1"
                     /translation="MINIKSKSTSSSDDKYYKEKDNSDSLSHGTNDDDNNNGIDSIEH
                     RSHSSSHHHDHHPRHHDHLSSRERIRKHLGARRIEFISTAVICVIFAVSFAHLEYYYI
                     KDPALQISNGKVQVIDPNFDRSRETEPIIGNMYQYHLFPMLFIFILISFAALFDDMTF
                     RLFGKSKRREAFFLGFANLVTAITVEDFAWFVNRWLVPLKDDPKGEQLMQFSDWTSMH
                     LGALDIGSNFVIPYWYLIAIAGATMAYYVAFRNHDIIN"
     gene            complement(2030..2386)
                     /locus_tag="VHF44_00890"
     CDS             complement(2030..2386)
                     /locus_tag="VHF44_00890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124135.1"
                     /translation="MLIRSKKFTKKKKPSPANEISEDDINKFITSIKSKNTYSKVKDL
                     PKIIPSLNSVKITTILRYLERSKRLILDSDGYIIWIRQDNNDNNTDRLSFAEVANFKG
                     NLGDQFIKEDNKNDEN"
BASE COUNT          831 a          388 c          450 g          903 t
ORIGIN      
        1 cttttccaat aactgtaact tcgataagcg tcttttcata atcgtcagtc atatcgacga
       61 tggataacgg ccgctaccaa aataaatctt gtacccaact aaaggttaat gcttatataa
      121 tgatatttct aattaaatga agttgattca ctttaagaaa acttctatgt atggagaagt
      181 aactattcct ggggcctaaa tgctttgttt ctgaataata tctctaagag taattttgtt
      241 aatagttgat tataggagca gtctattatt attatgaaac aacagcgaca aaaacaacaa
      301 aagacctcaa aacctcgaaa gaattatgac tataacaagc cgataggaaa atgcatagtt
      361 tgctattttc tttcaggatg gcattgctat gactgtgaca atgatttttg cggggctcat
      421 ttccatgatc ataaagaacg aaatctttgc ataaaggtgg cttgatctaa tatgtatatc
      481 gacgttgtct gctggtttga tgattctggt acagaattat gtaaaaatta taaaatatca
      541 tggcttgatt taaaaaaaga gatttcaaat ttactaaaag aaaatgaaat attactcgac
      601 gaaaccatct ttgaaccttc aagaagagga actaacactg ccattataca acctttggcc
      661 gggtccataa aagtgcgtgg agatggttct gcaagaaccg attatcgttc aatagagcta
      721 ttcaacacgt cggatatcag acgcgctttt atcgctattg atagagttac tgttggcgta
      781 atatatcccc catgttccct gataagataa cacgtatcta gttgatacaa tataaagaaa
      841 attaaagtaa tatatataag tactaaagtc gctatgcgaa ggataattta gtttaattaa
      901 acttcatatt tagattctgt tacttatgaa cataattagg tatgtaaata tgtaatcatt
      961 atacaaagaa tgtttttact atgactgctc ctttgtcttg gagaaacgat ttgacgatct
     1021 tattggtgaa tgctaaatag aatgtaaact gatataagtt gttattctgt ttgataaata
     1081 tcaaatcaaa gtctacctct tcttcagatg ataaatatta taaagaaaaa gataatagtg
     1141 atagtcttag tcacggtacc aatgatgatg ataataataa tggtattgac agcatagaac
     1201 ataggagtca tagcagcagc caccaccacg atcatcatcc tcgtcatcat gatcatctta
     1261 gttccagaga gcggattaga aagcacttgg gcgcaagaag gattgaattt atttcaacag
     1321 ctgttatttg tgtgattttt gctgttagtt ttgctcatct tgaatactat tatatcaaag
     1381 atcctgcatt gcaaatctca aatggaaaag tacaggtaat cgatcctaat tttgatcgaa
     1441 gtagagagac agaaccaata atcggcaata tgtatcaata ccatctcttt ccaatgcttt
     1501 tcatttttat ccttatcagt tttgctgctt tatttgatga tatgacattt aggttgtttg
     1561 gaaagagcaa aagaagagaa gcattttttc ttggttttgc aaatctagta actgcaatta
     1621 ctgtagagga ttttgcatgg tttgtgaata gatggttagt accgctcaaa gatgatccaa
     1681 aaggcgaaca actaatgcaa ttttctgact ggacttctat gcatttagga gcattggata
     1741 tcggtagtaa ttttgtgata ccttattggt atcttattgc cattgctgga gctacaatgg
     1801 catattatgt tgcctttaga aatcatgata tcataaacta agtatttgtt attatgtgta
     1861 tatgtaggtc gaatataagc aggattttaa agatattgat gaatatcatc gatttcataa
     1921 taacaatatt aaggagaaaa gagacacaat tgtaataatt tcatattctc tcatattata
     1981 ttacccagac tgttttatga gatgaaaaag aagaaataat taatatcatt taattttcat
     2041 cgtttttatt atcttctttg ataaattgat ctcccaaatt ccctttaaaa ttggctactt
     2101 ctgcaaagct tagccgatca gtgttattat cattattatc ttgccttatc caaataatat
     2161 aaccatcact gtctaatatt agtcttttag aacgttctag gtatcttagt atagtggtta
     2221 ttttcacaga atttagcgaa ggtatgattt taggaaggtc ttttactttg gaataagtgt
     2281 ttttgctttt tatcgatgtt atgaatttat tgatatcgtc ttctgatatc tcatttgctg
     2341 ggcttggttt cttttttttt gtaaatttct tggatctaat aagcatacta tatcttgact
     2401 atattctaaa actttgtgtt ttgtgtttct ttcttttttc aatccagtga atgagattaa
     2461 aatagataca atgcgggggg tgggatttga acccacgaat ccctaaggaa cagggttgta
     2521 ggagcgtgcg tgtattatac tgtcctggct cattctaagc ttcgcactcc tt
//
LOCUS       DATABJ010000049         3265 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1996045, whole genome shotgun sequence.
ACCESSION   DATABJ010000049 DATABJ010000000
VERSION     DATABJ010000049.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3265
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1996045"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..469)
                     /locus_tag="VHF44_00895"
     CDS             complement(<1..469)
                     /locus_tag="VHF44_00895"
                     /inference="COORDINATES: protein motif:HMM:NF003239.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEX2124136.1"
                     /translation="MKGVNYREPRGMPYVRREYISGKPQLKIARFSSGQARNDYDYKL
                     QLLVTEKMQIRHNSLESARLAANKTMAKAGDQSFFSMLKVYPHVILRENKMIATAGAD
                     RLQEGMRRAFGKSTGLAARVQPGQVIFEAHVSAANLRLAKDGFKVASSKLGCPT"
     gene            527..1147
                     /gene="endA"
                     /locus_tag="VHF44_00900"
     CDS             527..1147
                     /gene="endA"
                     /locus_tag="VHF44_00900"
                     /EC_number="4.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000214 - tRNA-intron endonuclease
                     complex [Evidence IEA];
                     GO_function: GO:0000213 - tRNA-intron endonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0006388 - tRNA splicing, via
                     endonucleolytic cleavage and ligation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA-intron lyase"
                     /protein_id="HEX2124137.1"
                     /translation="MSSSSSPSSSPSSSPSSSPQQSPCNELPYVIEAFLVEKELKIIV
                     KDTRFQDQLRSKGFGEKEDSQYLLKPYEALYLIYSKRLNLKREMNNINFDSLVEVVLK
                     QDRYILTKFLIYRDLRSRGYVAKEGFGFGVDFRVYERGDFDTKPAKYVVFGINEGINL
                     EVNDFSQIIKDIGKMGKDAIIAVVERRGEIIYYKVSTMHFTEIKNF"
     gene            1316..1684
                     /locus_tag="VHF44_00905"
     CDS             1316..1684
                     /locus_tag="VHF44_00905"
                     /inference="COORDINATES: protein motif:HMM:NF042555.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6659 family protein"
                     /protein_id="HEX2124138.1"
                     /translation="MLGNLCDTIIKLDRNIRFVGIVNDKGEVIEGGFQDGVEPLLEVT
                     DEQEMYTNSLSNMTLLKNYSDRLGKVKYSLTELQNIAMMSVPLDNGILCLSVYSKDID
                     VDKLKNTILEIISTRTKTND"
     gene            complement(2509..2584)
                     /locus_tag="VHF44_00910"
     tRNA            complement(2509..2584)
                     /locus_tag="VHF44_00910"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2546..2548),aa:Glu,seq:ctc)
     gene            2747..>3265
                     /locus_tag="VHF44_00915"
     CDS             2747..>3265
                     /locus_tag="VHF44_00915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124139.1"
                     /translation="MQHIPSELVDYISNNFRCPAGIIGCRATNPEMSLDCCEYDIAIF
                     NKQSAGNRFIRLGNHGLELISLTETSRINVMKLHNMIIIQDDDSLSLSSSLSSSISSS
                     SSSSSISSANNVSGYQKYYLRALRDLGKKSIINSLFYYETITKNIQKNSVLAAMWLKI
                     AAYDFLNGILALS"
BASE COUNT         1086 a          551 c          559 g         1069 t
ORIGIN      
        1 tagtaggaca tcctaattta ctggatgcta ctttaaagcc atctttagca agacggagat
       61 tagcagctga gacatgggct tcaaaaatta cctgtccggg ctgaactctt gcagctagtc
      121 ctgttgactt accgaaagcc cttctcatac cctcctgcaa acgatcagca ccggccgttg
      181 cgatcatctt attttctctc aaaatcacat gtggatatac ctttagcatg gaaaaaaaac
      241 tctgatctcc cgctttggcc attgtcttgt tggcagctaa tcttgctgat tccaaagaat
      301 tatgccttat ttgcatcttc tctgtaacaa gcagttgaag cttgtaatca taatcattcc
      361 gtgcctgccc tgaagaaaac cttgcaattt ttaattgtgg tttgccagat atatattcgc
      421 gtctcacata cggcatacca cgaggctcac gataattaac tcctttcata aaatattcac
      481 tgattttgaa tgcttaaatg tggttatgta ctctgattta atcgttatgt catcctcatc
      541 ttctccctca tcttctcctt catcttctcc ttcatcttct ccacagcaat caccctgtaa
      601 cgaacttcca tatgtgatcg aagcattttt ggttgaaaag gaattaaaaa ttattgttaa
      661 agatactaga tttcaagatc aattaaggag taaaggcttt ggagaaaaag aggattctca
      721 atatctactg aaaccttatg aggctctata cctgatttat agcaaacgtc ttaacttgaa
      781 acgagaaatg aataatatta attttgattc tcttgtagaa gttgtactca aacaagatag
      841 atatatcttg acaaaatttc tcatttatcg tgatcttaga agcagaggct acgtagctaa
      901 agagggtttt ggattcggtg ttgattttag agtgtatgaa agaggtgatt ttgataccaa
      961 gcctgcaaaa tatgtagtat ttggaatcaa cgagggcata aatttggagg ttaatgattt
     1021 ttcacaaata attaaagata tagggaaaat gggaaaggac gcaattattg cagttgtgga
     1081 gagacgagga gaaataatat attataaagt ttcaacgatg cattttacgg aaattaaaaa
     1141 tttttagtta taagtgtaat catatcacgc tcttttagaa aaggatataa tgattaattt
     1201 aaagtcaaaa caatcagaat ctaaatggat ttaacatgcc accgttaatg ggtctgacaa
     1261 caactatgga agtgataaat caaccattta tatcactaca ataatattat ttatcatgct
     1321 aggcaattta tgtgatacaa taataaaact tgatcgcaat ataagattcg tcggtattgt
     1381 caacgataaa ggagaagtca tagagggagg ttttcaggac ggtgttgaac ctttactaga
     1441 agtaaccgat gaacaagaaa tgtacacaaa ctccttatca aatatgacat tacttaaaaa
     1501 ttatagcgat agattaggca aagtcaaata tagtttgaca gaactccaaa atattgcaat
     1561 gatgagcgtt ccattagata atggtatact ttgtctatcg gtttattcca aagacataga
     1621 tgttgataaa ttgaagaaca ccatccttga gataatttca acacgaacaa aaaccaacga
     1681 ctaattagtc attttcgtgc tagaagatct tcctacacaa acataatact aatgttctaa
     1741 aaaagataaa ggattcgatg taagccaagt agttagaatt tacaaataaa gagtttgtaa
     1801 ggctgttttt acgcagtgat atatcaggat tcctatcagc aagcgactat cgtatttgat
     1861 gtattgatgt tcattcaatg tgtccaaaat gcaaatcagg ttatcatatc gtctatatta
     1921 tagaataatc atttcgtaaa ttctctgaat aaaaggtaat catgagttgc cctcttttta
     1981 aaatactcct gccagcactt ttttttgaat tgtcattgtc atggacaaag gttctcgagt
     2041 gcataattac aaatttatct acttccctgc tgaatgagtt agtggcaata ttcatacgat
     2101 atttagcatt gataacggaa attttttcgt atcgacatgt acttcttatc tttataaata
     2161 tagatatctt ttgagtatcg atgtaaagaa atgtaccagt atttctgtta atgatagtaa
     2221 taatttctat taaaaggcta ctgattgaaa tgtattattt attattctat gataattttt
     2281 tcatgactga agagtccatc accgccagac atacttttgt tattattcac cattaaaata
     2341 taattattga taggattctt gatctgacaa gatttttatc agtcatttac ttttcagaat
     2401 caatgtagga taatgacgat tatgatagtc cccctattat tctgggttat aggccagaaa
     2461 agatgaagag aactaccgga ctaccgaatc ctacaggaag taattaaatg ctccggccgg
     2521 gatttgaacc cgggatcgtc gccttgagag ggcgaaatgc ttaaccggac tacaccaccg
     2581 gagctcaggc acaatgaatt tggatcttca tataaaactt atgccatcat atttactatg
     2641 cggcacatat atatctgaag atatgaggtt ttgaaatttt tcaagttatt tgtaaattct
     2701 tacttactat atttgtcaat aacagcttta ttaattttta taagtattgc aacatatacc
     2761 tagtgagctt gttgattata taagcaacaa ttttcgctgt ccagcgggaa taatcggctg
     2821 ccgggcaacc aatcctgaaa tgtcacttga ttgttgcgaa tatgacatcg ctatttttaa
     2881 caaacaatcg gctggcaata gatttatccg gctaggcaat catggactag aattgatttc
     2941 tctaacggaa acatcaagga tcaatgtgat gaaattgcat aatatgatta taatacagga
     3001 tgatgatagt ttgagtctat catcatcatt atcatcatca atatcgtcgt cgtcatcatc
     3061 atcatcaata tcgtcagcca ataatgtctc tggttatcaa aaatattatc ttagagccct
     3121 aagagacctt ggaaaaaaat cgataataaa ttcattattt tattacgaaa caattactaa
     3181 aaatattcag aagaattctg tattagccgc tatgtggcta aaaatagctg catatgattt
     3241 tctgaatggc atattagcat tgtct
//
LOCUS       DATABJ010000050         2043 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1563904, whole genome shotgun sequence.
ACCESSION   DATABJ010000050 DATABJ010000000
VERSION     DATABJ010000050.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2043)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2043)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2043
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1563904"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..991
                     /locus_tag="VHF44_00920"
     CDS             <1..991
                     /locus_tag="VHF44_00920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="electron transfer flavoprotein"
                     /protein_id="HEX2124140.1"
                     /translation="EEQLRTRFAVSKLIKTWEELRHTYYSPSGRAKLIENGKYKSSEE
                     IKARLDFIHKELSSKYGTRFVTDYIELEYSAKLVPDGKRCRMKKPYYKNVLFIGDAAG
                     RGIFIGPKIEGLNVGIDDAVRAANAVARSIDRNNFSPNYMGEFYSQLVEDSPYTRDMK
                     EIDKDYLKIFLDAAKDVPKDIVGSRYGMIFKLMSSGTFRGLAVGFANMLGYDRLLPLI
                     ESEETYVQVPIEIAEKLGSRISSSYVPSIPTLAQRIARLKYDDDSLSHIKVLDPKSEF
                     MKKMVILCPTKCYITENNKVMLQHEGCIECGTCAKDTEWRHPRGEKGINYQYG"
     gene            complement(1227..1775)
                     /locus_tag="VHF44_00925"
     CDS             complement(1227..1775)
                     /locus_tag="VHF44_00925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEX2124141.1"
                     /translation="MVKTPSSQTLKTGQNAPDFKLRGIDGKIYSLHDFTSKSLLIVFI
                     CNHCPYVKARIGDIINLQSIFKNSELQVVGINSNDPNYIEEGFDNMIKFANERKLNFP
                     YLIDDTQYIAKSYGAVCTPDPFLFDEQRRLVFHGKINDAVEPEMTPKIQVMENNIRKI
                     LKGEKIEKDFDPSIGCSIKWKN"
BASE COUNT          686 a          324 c          377 g          656 t
ORIGIN      
        1 ggaagagcaa ctaagaacac gttttgcagt aagcaaactg ataaagacat gggaagagct
       61 acgtcacacg tactattctc catctggtag agcaaaactt attgaaaatg gtaaatacaa
      121 gtcaagtgag gaaattaagg cacgacttga ttttatacat aaagaattaa gcagcaagta
      181 tgggacaaga tttgtaactg attatattga gctagaatat agtgcaaaat tggttcctga
      241 tggaaaacgc tgtaggatga agaaaccata ctataagaat gtattattta taggtgatgc
      301 tgctggtcgg ggtattttca taggtccaaa aatagagggt cttaacgtag gaatagatga
      361 tgcagttagg gcagccaatg cagttgcaag atctattgat aggaataact tttctcctaa
      421 ttatatgggc gaattttaca gccagctagt cgaggatagc ccatatacaa gagatatgaa
      481 agaaattgac aaagattatc tgaagatatt tctggacgct gcaaaagacg ttccaaaaga
      541 tattgtcggc tctagatatg gaatgatctt caagttaatg tcgagcggca catttcgagg
      601 acttgcagta ggctttgcta atatgctagg atatgatcgt ctcttgccat taatagaatc
      661 agaagagact tatgtccaag tgccaattga gattgcagaa aagctaggta gtagaatttc
      721 ctcttcatat gtaccttcaa ttccaacact tgcccagcgt atcgcaagat tgaagtatga
      781 cgatgattct ctttctcata tcaaagtatt ggatccaaaa agtgagttta tgaaaaagat
      841 ggttatactt tgtccaacaa aatgctatat cacagaaaac aataaagtaa tgcttcaaca
      901 tgaaggatgt atagaatgtg gaacttgtgc aaaagatacg gaatggagac atccgcgggg
      961 cgaaaaagga attaactacc agtatggcta gctattcata aatagctatg ttattattca
     1021 cagtttttat tctgcatgac gaggaggatc tgaataatta ccataaagtc tcggcaggtc
     1081 aggcaggcta ctaaatagga aattgaatca gctaaaagat tgacgtgtag atgttaaatt
     1141 aacaggtaga ataccttaca ctatttttta tatcatctac tatatcgatc tattcacaag
     1201 ttatgttcat tagaatacgt aataaactaa tttttccatt tgattgaaca accaatagat
     1261 ggatcgaaat ccttttctat tttttcccct tttagaattt ttcttatatt attttccatg
     1321 acttgaattt tgggtgtcat ttcaggctca actgcatcgt taattttgcc atgaaaaacc
     1381 agtctgcgtt gctcatcaaa cagaaacgga tcaggcgtac aaacggctcc atatgatttt
     1441 gctatatatt gagtatcgtc aattaaatac ggaaaattta atttccgttc atttgcaaat
     1501 tttatcatgt tatcaaaacc ttcctctata tagttaggat cgttgctgtt aatacctact
     1561 acttgtaatt ccgaattttt gaatatagat tgcaaattta taatatctcc gattcttgcc
     1621 ttgacataag gacaatggtt acagatgaat actataagca atgatttgct tgtaaagtca
     1681 tgtagagaat atatcttgcc gtcaatgccc ctcaatttaa aatctggtgc attctgacca
     1741 gtttttagag tttgacttga aggtgtcttt accatacaat aagccttgag catcatacca
     1801 tattaaaaat tctatgtttt tttgaaaatg cgcaaattcg caaaaattta taatatctaa
     1861 ttcattgtcg atagacaaca actaaatcga tatttgcata taattgatcg tgttataatt
     1921 actattgcat aatttctggg tgtttgcgga aatactcttt tatatctagg caagtcaaat
     1981 cactatgtaa tggcaattat atgtatatca acagcttgta atttatagaa ttttacttct
     2041 gat
//
LOCUS       DATABJ010000051         2435 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1996630, whole genome shotgun sequence.
ACCESSION   DATABJ010000051 DATABJ010000000
VERSION     DATABJ010000051.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2435)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2435)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2435
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1996630"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(122..259)
                     /locus_tag="VHF44_00930"
     CDS             complement(122..259)
                     /locus_tag="VHF44_00930"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124142.1"
                     /translation="MAFSKKDSSILFYFTISVCARAPPIAIKDKTIATPEAELLKEDY
                     S"
     gene            complement(554..1132)
                     /locus_tag="VHF44_00935"
     CDS             complement(554..1132)
                     /locus_tag="VHF44_00935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEX2124143.1"
                     /translation="MIFQQVIKIPKDRIGVIIGKNGKVKGQIEDKCSVTIEVDSEYGD
                     TIISAGTKPVEEMEPFKAVEIVSAIGKGFSPERAYRLLGEEEVLQLIDLRDYAGKSPN
                     ALSRIKGRIIGEAGKSRKTIEDLSGTYISVYGHNVAIIGTFEEIKLATEAVTMLSKGR
                     SHANVYNMLQEAKRKSKLDRMQLWENDRMRKL"
     gene            complement(1129..1965)
                     /locus_tag="VHF44_00940"
     CDS             complement(1129..1965)
                     /locus_tag="VHF44_00940"
                     /inference="COORDINATES: protein motif:HMM:NF013341.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protein kinase RIO"
                     /protein_id="HEX2124144.1"
                     /translation="MGKEEKLEKNRAGYAHNTAMDRADRRYLRHERENRLLIKTSEDR
                     RVFDDVFDMRTLMVLNSMISDGVFKYLRSPFASGKESKIYLALDNNDKFLAIKIYLTV
                     SAEFKKRLQYIAGDPRFSNIKQGSQNLIATWAKKEFRNLKTAYEAGVSVPNPYQVRRN
                     VLAMEFMGDSEGNPYSNLADADPITSEDYDDVIEETTKLYNKANLVHADLSQYNIFKD
                     VDHARIILFDFGSSVDIKHPNSKQFLTRDILNINNFFAKHGVKILANELALKRVTGEI
                     NN"
     gene            complement(1999..2307)
                     /locus_tag="VHF44_00945"
     CDS             complement(1999..2307)
                     /locus_tag="VHF44_00945"
                     /inference="COORDINATES: protein motif:HMM:NF016157.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF424 family protein"
                     /protein_id="HEX2124145.1"
                     /translation="MNYALRRMKYQGSTMVNICDIELVGTKLEHGDIVVDLSKEYFQQ
                     EIIEESKAKNLLQTCSIANLVGERIVNLAIKLRLAKEISIKRISGIPFLMIFKFHHRY
                     "
BASE COUNT          708 a          483 c          364 g          880 t
ORIGIN      
        1 gaaggcatta agcatctcga cctattgata caatcggcta tggttttact ataaacagcg
       61 tcaaaaagtc aactcggaat tagttcactt tattggctga tgaaatgaaa aaatatgttg
      121 tttaactata atcttctttt aataattctg cttcaggagt ggcaattgtt ttatctttga
      181 tagcaatagg tggagcacga gcacatacac ttatagtaaa gtagaacaga atactcgagt
      241 cttttttgga gaatgccaaa aattatccag gcccaccgat ttatacgccg ctaccaagag
      301 aggctcatgc tatattatct gaacttcgtg aaatgtcgag gggacttaac actgaagctc
      361 catcatagta ctttatagct agattatatc ttcctaaatt atttatatag agagcaatct
      421 tattgtaaaa ttcgactggt gtttccttgt cgtttatttt cagaacagtt accgaaaaaa
      481 gaaattaact ttttttagct agcttctaca gtattgatca tcattattat cagcagcaaa
      541 ttgaatgctt atactatagt ttacgcattc tatcattttc ccataactgc atcctatcta
      601 acttagattt cctctttgcc tcttgcaaca tattgtagac attagcatgc gatcttccct
      661 tcgatagcat agtcacagct tcagtagcaa gcttgatttc ttcaaaagtt ccaatgattg
      721 cgacattatg accatagacc gagatataag ttccactaag atcttcgatc gttttcctag
      781 atttaccggc ttctcctatg attcttcctt tgattctact taatgcatta ggggatttac
      841 ccgcataatc tctcaaatct attagctgca aaacttcttc ttcacctagc aatctatatg
      901 ctcgctcggg ggagaatcct ttgccaatag cagagacaat ctctactgct ttaaaaggtt
      961 ccatttcctc aacgggcttt gtaccagcag aaatgatggt atctccgtat tcactgtcta
     1021 cttcaattgt aacgctacat ttatcctcaa tttgtccttt caccttgccg ttctttccga
     1081 taatgacgcc tattctatcc tttggaattt ttattacttg ttgaaagatc aattatttat
     1141 ctctcctgta actctcttta gtgctaattc gttcgctaga attttaacac catgttttgc
     1201 aaaaaaattg tttatattaa gtatatcacg tgtcaagaat tgttttgaat taggatgttt
     1261 gatatctacc gatgatccaa agtcaaataa tatgattcgc gcatgatcaa catctttgaa
     1321 tatgttatat tgagataaat ccgcatgcac tagatttgct ttattgtaaa gctttgttgt
     1381 ctcctcgatg acatcgtcat aatcttcgga tgtgattgga tctgcatctg ccaaatttga
     1441 ataaggatta ccttcagaat cacccataaa ttccattgct aaaacgtttc gacgaacttg
     1501 atagggatta ggaacgctga cccctgcctc ataagcagtc ttcaaatttc ggaattcttt
     1561 tttcgcccat gtggcaatta aattctgaga accttgttta atatttgaaa atcgtggatc
     1621 cccagctata tattgcaatc tctttttaaa ttcagcgctt acggtaagat atatttttat
     1681 cgcaagaaat ttatcattat tatctaatgc caaatagatc ttagattctt ttcctgaagc
     1741 aaaagggctt cttaaatact taaaaactcc gtcactaatc atactattta gaaccataag
     1801 agtgcgcata tcgaaaacat cgtcaaaaac tcttctgtct tcagatgtct ttattagcaa
     1861 ccgattttct cgttcatgtc taaggtatcg tcggtctgct ctgtccatag ctgtattgtg
     1921 cgcatagcca gctctattct tttccaactt ttcttctttt cccacaaacc aatatgtttt
     1981 tacttattta actattagtc aatatctatg gtgaaattta aaaatcatca agaaaggtat
     2041 accagatatc ctctttatgc ttatttcttt tgctaatcta agcttaatgg ccagatttac
     2101 aattctttct ccaactagat ttgctataga gcacgtttga aggaggttct tagccttgct
     2161 ttcttcaatt atttcttgtt gaaaatattc cttgcttaga tcgactacaa tatctccgtg
     2221 ttctaattta gttccaacta gctcaatatc acatatatta accatagttg atccttggta
     2281 tttcatcctt ctaagtgcat aattcattat gaagcgctct gcaagaatgt ataatatata
     2341 ataatatttg catcaatcga tatatgcaaa gctaatattt catttacttg tctttttgcc
     2401 atgttataat acatttcgct atgaaccgta aattt
//
LOCUS       DATABJ010000052         5024 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_37466, whole genome shotgun sequence.
ACCESSION   DATABJ010000052 DATABJ010000000
VERSION     DATABJ010000052.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5024)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5024)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5024
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_37466"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..529
                     /locus_tag="VHF44_00950"
     CDS             <1..529
                     /locus_tag="VHF44_00950"
                     /EC_number="1.8.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004604 - phosphoadenylyl-sulfate
                     reductase (thioredoxin) activity [Evidence IEA];
                     GO_process: GO:0019379 - sulfate assimilation,
                     phosphoadenylyl sulfate reduction by
                     phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoadenylyl-sulfate reductase"
                     /protein_id="HEX2124146.1"
                     /translation="NQETYDVMDAIRKKYGIQIEVYFPEQRETEEMVKIKGMNLMYES
                     VENRKLCCEIRKVHPLNRALSKLDGWITGLRREQAITRANIYKLEIDSSHGNIVKINP
                     LADWTNEMIWDYIHKNNVPYNKLHDSGYPSIGCEPCTRAVHRGEDPRAGRWWWENATQ
                     KECGLHWDPTKKYQK"
     gene            432..1691
                     /gene="sat"
                     /locus_tag="VHF44_00955"
     CDS             432..1691
                     /gene="sat"
                     /locus_tag="VHF44_00955"
                     /EC_number="2.7.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004781 - sulfate adenylyltransferase
                     (ATP) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfate adenylyltransferase"
                     /protein_id="HEX2124147.1"
                     /translation="MEKIHELVDGGGKMRHKKNAVCIGIPLRNTRSRELLLGHIRSNS
                     IPQPHGGKLINRFTTSKKNIDGMFSINVSYDLRNDIENIADGVLSPLEGFIGHDDFQS
                     IIKSGHLKNGLAWTIPIILDVDEQTAIKMKDAREVCLSSNENFGILHVEDAYSFDKLA
                     AAKAIYQTDDLEHPGVSNMIRMKDRSIEGKVDVIKRIEKSPLRKYRMSPSETRSQIQK
                     SGWKTVVGFQTRNIPHIAHEMLQKAALNIYDGLFLNPLIGKKKVGDFKDEIILGAYET
                     LIENYYPKNRAMFVTLHTEMRYAGPKEAIHHAIMRKNFGCSHFIVGRDHAGVGNYYPP
                     FAAHDIFKDYEDLGIEPLFFPAFYYCKKCLSYANERNCPHTPEFREELSGTKMRKMVS
                     SHETPAEHLMRPEIAKLIMSSIDPFVK"
     gene            2069..2818
                     /locus_tag="VHF44_00960"
     CDS             2069..2818
                     /locus_tag="VHF44_00960"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124148.1"
                     /translation="MLYFVISFLLVSIILISELPFVLSQQQQQLVNPPQGEYQVIKTE
                     NSEQFVFPYSSSNSDRKNPFVYAFDTPKVTNWILTIQNNMSYSDMQNAKTIVKLQEPA
                     PSDKFIEIAMFGDASKKFWVAVNTKESGYIRVYEHDTDGWSRDQPVIVAHANNQGLTI
                     TNGQRIIIDKLSIEDFTIASIAVYGKDEPTSAVNTYGGDISFNVIYGNPMNSPLYYFP
                     LAMIVGIGGLVIGLLVFKKRKPSSEEQTQHQ"
     gene            complement(2772..3473)
                     /gene="nth"
                     /locus_tag="VHF44_00965"
     CDS             complement(2772..3473)
                     /gene="nth"
                     /locus_tag="VHF44_00965"
                     /EC_number="4.2.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140078 - class I DNA-(apurinic or
                     apyrimidinic site) endonuclease activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEX2124149.1"
                     /translation="MTAKSIGSIISKMEKVLYHRKLPRLTALTELQREEECDAFKVLI
                     GTILSARSRDENTKKVLNNLFIRFKNAKELAEADIQEIKAIIHSSGFYNVKAKRIKEV
                     SQLIIERFNGKVPDDLERLLDLPGVGIKTANCVLVYAFNKPAIPVDIHVHRISNRLGL
                     VNTRTPENTEAELSRIIDKKYWLKVNSTFVMYGQNVCLPIKPNCKVCQLKNVCKFYRN
                     ITDAVSAPQKKASFS"
     gene            complement(3785..4516)
                     /locus_tag="VHF44_00970"
     CDS             complement(3785..4516)
                     /locus_tag="VHF44_00970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEX2124150.1"
                     /translation="MGKRTLVRRRGRGGKQFRAITVGKLAPAKYPNFKLDEHHSGTVV
                     DIVHERGRDAPLARIHYDDNTYSYVPAPDGTTVGSRIEIGVGATATARNILSLESIPD
                     GTLICNIEKNAGDGGKLIKSAGSSALVFAHGTEGVTLKFPSGKFLAVNPKCRAMIGII
                     AGAGRKEKPFLKAGNRAKYMQAHGRLYPTVRGIAQAAVYHPHGGGRHQHIGRQSSVGR
                     TTPPGRKVGIIAPRKTGRGRIKERK"
     gene            4713..>5024
                     /locus_tag="VHF44_00975"
     CDS             4713..>5024
                     /locus_tag="VHF44_00975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2124151.1"
                     /translation="MSIVLGVIVSQNTLSLKVLEAYTRDVGRGVARIDYDSMDSLSAS
                     TGDVIEIRGKRRTVAKCLPLYPSDEGKGIIRIDGLVRNNAGVAIGDTVVVRKIKAVPA
                     EK"
BASE COUNT         1684 a          827 c          926 g         1587 t
ORIGIN      
        1 caatcaagaa acttatgatg tgatggatgc gatccgaaaa aaatatggca tacaaattga
       61 agtctatttt cccgaacaga gagaaaccga agaaatggtc aaaataaaag gtatgaattt
      121 gatgtatgaa agtgttgaaa atagaaagct ttgctgcgaa attagaaaag tacatccact
      181 taatagagcg ttaagtaagc ttgatggatg gattactggc ctcagaagag agcaagcaat
      241 aaccagggct aatatctata aacttgagat tgattcttca cacggcaata ttgttaagat
      301 taatccgtta gcagactgga ctaatgaaat gatctgggat tatattcaca aaaataatgt
      361 tccatataat aagttacatg atagtggata tccaagcata ggctgtgagc catgtacgag
      421 agctgttcat cgtggagaag atccacgagc tggtagatgg tggtgggaaa atgcgacaca
      481 aaaagaatgc ggtctgcatt gggatcccac taagaaatac cagaagtagg gaattattat
      541 tgggtcatat acgtagcaac agtataccac aaccccatgg aggcaaattg ataaacagat
      601 ttactacttc taaaaaaaat attgacggga tgttttcaat taatgtaagt tatgaccttc
      661 gaaatgacat tgaaaatatt gctgatggtg tcttaagtcc cctggaggga tttataggtc
      721 atgatgattt ccaaagcatt ataaaatctg gtcatttgaa gaatggttta gcatggacta
      781 tccctataat cttggacgta gacgagcaaa cggcgataaa gatgaaggat gctagggaag
      841 tttgtttgag tagtaatgaa aattttggaa ttcttcatgt tgaagatgct tattcatttg
      901 ataaacttgc tgcagcaaaa gcaatctatc agacagatga tctagaacat cctggagttt
      961 caaatatgat aagaatgaaa gatcgatcta ttgaaggtaa ggttgatgtt attaagagaa
     1021 ttgaaaaatc gcctttgaga aaatatagaa tgagcccctc tgaaactaga tctcaaattc
     1081 agaagagtgg atggaaaact gtagtaggat ttcagacaag aaatattcca catattgctc
     1141 atgaaatgtt gcagaaggca gccttgaata tttatgatgg attatttcta aatccattaa
     1201 tcggcaaaaa aaaggttggt gattttaagg atgaaataat tcttggagca tatgagacat
     1261 tgatagaaaa ctactatccc aagaacagag ccatgtttgt aactcttcat acagaaatga
     1321 gatacgctgg gccgaaagag gcaattcatc atgcaattat gagaaaaaat tttggatgtt
     1381 cacactttat agttggaaga gatcatgcag gagtaggtaa ctattatcct ccttttgcag
     1441 cccatgatat ctttaaagat tatgaggatc ttggaataga accactattc tttcctgcat
     1501 tttactactg caagaaatgt ttgagctacg caaatgaaag aaactgtccg catacaccag
     1561 aatttcgaga agaactgagt ggcaccaaga tgagaaaaat ggttagctcc catgagactc
     1621 cagccgaaca cttgatgaga ccagaaattg caaaattgat tatgtcatct attgatccat
     1681 ttgttaagta agagactaat aatattataa tgaatctaga agcttagttg cttttgttct
     1741 tgtcttgtcc gttggattta ttgttttgta tcttgccgat tttttagaaa aggtacaacc
     1801 aaaaattaaa aaaactttat acaatagcat agacaggaac aactatcatt tgataataag
     1861 aaaaaaacat ctttagcttt tacaaaacaa atttgttgcc ataattgcct gtaaaactac
     1921 taatcatata taatagattt caaaataatt gtaagcaata attacagata ataaaatata
     1981 tacattataa attataatac tataataatt actgagcgag atgaggtagg aataattaat
     2041 attactatat gacaaatctc tatgttatat gctgtatttc gttatatcat ttttattagt
     2101 atccattata cttatctccg aactaccctt tgttctaagc caacaacaac aacaattagt
     2161 taatcctcct caaggtgaat atcaagtaat caagacagaa aatagcgaac aatttgtttt
     2221 tccatattct tcatcaaata gtgatagaaa gaatccattt gtttatgctt tcgacacgcc
     2281 taaagttacc aattggattt tgacaataca aaataatatg tcatatagtg atatgcagaa
     2341 tgcaaagact attgtaaaat tgcaagaacc cgcaccaagt gacaagttca ttgaaattgc
     2401 aatgtttgga gatgcttcta agaaattctg ggtcgcagta aatacaaaag agtctggcta
     2461 cataagagtc tatgaacacg atactgatgg atggtctaga gatcagccag taattgtagc
     2521 acatgcaaac aatcagggtc tgactattac caatggtcaa aggattatta ttgataaatt
     2581 atccatagaa gattttacca ttgcttcgat agcagtttat gggaaggatg agccaacttc
     2641 tgctgttaac acatatggag gagatatctc gtttaatgtg atttacggaa atcctatgaa
     2701 ttctccgctt tattattttc cacttgctat gatagttggt attggtgggc ttgttattgg
     2761 actgctggta tttaagaaaa ggaagccttc ttctgaggag cagacacagc atcagtaata
     2821 ttgcgataga atttacaaac attctttaat tgacatactt tgcaatttgg ttttatcgga
     2881 agacagacat tttgaccata cattacgaaa gttgagttta ctttgagcca atatttttta
     2941 tcaataatgc ggcttagttc agcttcagta ttttctggtg ttcgagtatt aacaagacct
     3001 aatctgtttg atattctgtg aacgtgaatg tcaactggaa ttgcaggttt attaaaagca
     3061 tatactaaaa cacaatttgc cgtctttatg cctacaccag gcagatctag aagtctttct
     3121 aaatcatcag gaacttttcc gttaaatctt tcaattatta attgtgaaac ttctttgatc
     3181 ctcttagctt tgacattgta aaaaccactg ctatgtatta ttgctttaat ttcttgtatg
     3241 tctgcctctg ccagttcttt agcattttta aacctaataa ataagttgtt gagaactttt
     3301 ttggtatttt cgtctctact acgtgctgat agaattgtcc cgataagtac tttgaatgca
     3361 tcgcattctt cttccctttg caattctgtg agggcagtaa gtcttggtaa ttttctatga
     3421 taaagcactt tttccatttt actaattatg ctgccaatag attttgcagt caatatagaa
     3481 acctctaaga atataataat tctatattac caaattctat atatttgctg tccaataaca
     3541 gtcgcttgct ttttgaatac agaaaatatt gtcgtcacca tttttgctat gtcattcatc
     3601 ataacgattc aacctaacag atctgattaa aatgcgctat gacagaatag attaaatatt
     3661 taatgtaatt gtataatata aacaatgaaa taattttttc tatcaatatg gaatagccaa
     3721 aaggaaatta aaataggttt gatcttaaaa aaagaaataa aaaactggca tattcttatt
     3781 tttattattt tcgctctttt attctaccac ggcctgtctt tctaggtgct ataatcccaa
     3841 ctttgcgtcc tggtggagta gttctgccaa ctgacgattg acggccgata tgctgatgtc
     3901 ttccaccacc atgtggatga tacactgcag cttgtgcaat acctctaact gtaggatata
     3961 gtcttccatg agcttgcata tactttgctc tattgccagc cttcagaaat ggtttttctt
     4021 ttctacctgc acctgcaatt attccaatca ttgctcgaca ttttggatta actgcaagaa
     4081 acttaccaga agggaacttt aatgttacgc cttcagtgcc atgagcaaaa acaagagcag
     4141 aagaacctgc tgatttaatt aacttaccac cgtcgccagc gttcttttca atgttgcaaa
     4201 ttaaagtgcc atcaggtatc gattctaaag acaaaatatt tcttgcagtt gcagttgctc
     4261 cgacaccgat ttcaattcta cttccaacag ttgtaccgtc aggagctgga acataggaat
     4321 aagtgttatc atcatagtga atcctcgcca gaggagcatc tcttccacgt tcatgtacaa
     4381 tatcaacaac agtaccagaa tgatgctcat ctaatttaaa attaggatat ttggcaggag
     4441 caagctttcc aaccgtaatt gctctaaatt gcttgccccc tcgacccctt ctacgtacta
     4501 acgttcgctt acccaaactt attcaaaaaa gagacgcgca aataggtgat tttaagtttg
     4561 tgttaattta atgtcaattt aagacggatg acaaataata aatgctgtat ttaacatttt
     4621 attagttaaa cacatcttca taatatacaa ggatcaatag attaaagata ttaccactaa
     4681 gatttggaca gaaacgtagt aaaggtataa agatgagtat agtactaggt gttatcgtga
     4741 gccagaatac tctatctcta aaggtacttg aagcttacac tagagatgta ggccgtggag
     4801 ttgctcgaat tgactatgat tctatggatt ctttgagtgc gtctacaggc gatgttatcg
     4861 agattagagg caaacgtaga actgttgcca agtgtttacc actttatcct tcagacgaag
     4921 gtaagggtat aatcaggatt gacgggcttg ttagaaacaa tgcaggtgtt gctattggtg
     4981 atacagttgt tgtaagaaag attaaggcag ttcctgctga aaag
//
LOCUS       DATABJ010000053         1999 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1784881, whole genome shotgun sequence.
ACCESSION   DATABJ010000053 DATABJ010000000
VERSION     DATABJ010000053.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1999
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1784881"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            318..1391
                     /locus_tag="VHF44_00980"
     CDS             318..1391
                     /locus_tag="VHF44_00980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124152.1"
                     /translation="MGIAKLAKVTLILPRVESAQAISRLAEFQWFHPVTTASEHSEPN
                     LDNLLLRAQKLYQNVDEIVRALGIQVGIGIIDTMIKGAKKEKKEFKVAELESLVAKLE
                     AESKILVEECRAVLNEQASLKRQLEEYNTLKDALNVVSGLQVNLNRIGEGIRFFSAMY
                     IINIKDFPEIQRSLPGIPLVTIPLNDFQSSLFAVGAKDEADRINKVIRSFDAYPFVIP
                     ANLPQNPKSAYEHVLTKIAELTKKKKEIDSQITKITTDITPKILSIHEGARVSRDVLE
                     TLRKPGGLRKFAIIQGYIPDIMAEKFRRITNKWITIVEDIQESESLHNEGYDGKKKDD
                     LQPKPSLFVNSRYFRSFEPITLT"
     gene            1413..>1999
                     /locus_tag="VHF44_00985"
     CDS             1413..>1999
                     /locus_tag="VHF44_00985"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124153.1"
                     /translation="MDPTPMIAFIFPILYGLMFGDLGQGAIIAAVGAIFRIRAVGNLR
                     QWGTLLMASGISAMIVGLIVGEAFGFHILELPGAEALKSTGFIGILNATEFTQENVFT
                     ILTISINIGILHLISAFSLSIYKGIKQGKGFEVITQRVPVLIMYMAIISIMLAAVGAN
                     YQVLEMFSSQNPAPFFSNIAGNWVTVELTAKIAIP"
BASE COUNT          661 a          338 c          396 g          604 t
ORIGIN      
        1 gacaaattga tggcaagttg aggtgcacaa ctgttatctg ccatttctta tcgatacctt
       61 gaatgagtat tttcaataaa tattactttt tcttgaaata actatttggt ttttaagatc
      121 atgataaagt attatctcct atagtctcga tatctattat tgtaattata aaagaatatg
      181 gcgaaaatag aggtgattgc tttaaaggta attataagat ttagatttca tacatcagct
      241 aaatgttgca taagatacac gtctcactgt tacagaagat aagattttaa agcggagtgt
      301 tgacacttta aattggagtg ggaatagcaa agctcgcgaa ggtcacccta atacttccca
      361 gagtagaatc tgcgcaggct ataagcagac ttgcagaatt tcaatggttt catcctgtaa
      421 ctacagcttc agaacattca gagcctaatc ttgataattt gttattacgg gctcaaaaat
      481 tatatcagaa tgtagacgaa attgttcgag cgcttggaat ccaagtaggt attggcatca
      541 tcgatacaat gatcaaaggt gcaaaaaaag aaaagaaaga gtttaaggta gctgaattag
      601 agtctttggt tgctaagctt gaagcagaat caaaaattct cgttgaagaa tgccgggctg
      661 ttcttaacga acaggcatcg ctaaaaaggc aactcgaaga atacaacaca ttaaaagatg
      721 ctctgaatgt ggtgtctgga ttacaagtta atttaaatag aataggcgaa ggtatacgtt
      781 ttttttccgc gatgtacata attaatataa aggattttcc agaaattcaa cggtctcttc
      841 ctggaattcc acttgtcacc attccactaa atgattttca atcttctttg ttcgctgtgg
      901 gtgctaagga tgaagcagac agaatcaaca aagtaatcag aagtttcgat gcttatccat
      961 ttgttatccc tgcgaacctt ccacaaaatc ctaaatctgc atatgaacat gtcctcacca
     1021 agattgccga actaaccaaa aagaagaaag aaatcgatag tcaaattact aagattacta
     1081 ccgatattac tccaaaaata ctttctatac atgagggtgc aagagtttca agagatgttc
     1141 ttgaaactct tcgcaagcca ggaggcctta gaaaatttgc aataatacag ggatatattc
     1201 ctgatataat ggctgaaaaa tttaggagaa tcacaaacaa atggattaca attgtcgagg
     1261 acatacaaga atcagaatct ttgcacaatg aaggatatga tgggaaaaaa aaggatgatc
     1321 ttcaaccaaa acccagcttg tttgtaaaca gccgttattt taggtcattt gagccaatta
     1381 cgcttacata aggtcttcca aaagcaggtg aattggatcc aacacctatg atcgccttca
     1441 tctttccgat tttatatgga ctaatgtttg gtgacttagg acaaggagca ataatagcag
     1501 cagtgggtgc catttttagg attcgtgcgg ttggaaatct cagacaatgg ggaactcttc
     1561 taatggcatc aggcatatct gcaatgattg taggtcttat cgttggagaa gcattcggct
     1621 ttcacatact ggaattgcca ggggcagagg cattaaaatc aactggcttt attgggatat
     1681 taaatgcgac agaatttacc caggagaatg ttttcactat tcttactata tccattaata
     1741 ttgggatctt gcatctgatt agcgcattca gtctaagtat atacaaaggt ataaagcaag
     1801 ggaaaggctt tgaagttata acacaacgtg ttccggttct tataatgtat atggctataa
     1861 tatctattat gctggctgct gtgggggcaa actatcaggt tctagaaatg tttagtagcc
     1921 aaaatcctgc tcctttcttt tctaatattg ctggaaattg ggtaactgtc gaacttacgg
     1981 ctaagatagc tattcctat
//
LOCUS       DATABJ010000054         5491 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_913660, whole genome shotgun sequence.
ACCESSION   DATABJ010000054 DATABJ010000000
VERSION     DATABJ010000054.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5491)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5491)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5491
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_913660"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            57..725
                     /locus_tag="VHF44_00990"
     CDS             57..725
                     /locus_tag="VHF44_00990"
                     /inference="COORDINATES: protein motif:HMM:TIGR01470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional precorrin-2
                     dehydrogenase/sirohydrochlorin ferrochelatase"
                     /protein_id="HEX2124154.1"
                     /translation="MIVDLNLDNKYVIVIGGGTEGVRKVRGLLGQNCKIIVISNRFNR
                     YLLNLDKDGKIQVIKAKLKDANILDDYKNPFLILAATNDKSLNRKLVDKGRQMGSFVY
                     AADDPLYSDFSYASIINIEGIMQVAISTSGKSPIMARKVRIKAERILRRVIKRSDIEN
                     TKLQEFARIAAKPKIKTVDKRKEFLYSIIHDQQIQNLIKEDRFEDAKSTTLKLLEKWE
                     NKNK"
     gene            725..2014
                     /gene="hemA"
                     /locus_tag="VHF44_00995"
     CDS             725..2014
                     /gene="hemA"
                     /locus_tag="VHF44_00995"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0008883 - glutamyl-tRNA reductase activity
                     [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEX2124155.1"
                     /translation="MTLSSSMIQSLQVINARVTFRNAPIHLLEKFAFIDIDYAYKKII
                     ENCNIRECVIIQTCNRVEVFAAGTGPYEKKLLEVWSSIIGLPVGEIENTAEISKDRDV
                     VLHLLKLASGLDSLVIGEDQILGQVKRAFDFANKNHYVGSTLLVMFDRAAKVGSKVRT
                     LTSLNKGSISIGSIAVNLAEEYIENLKSKGIILIGTGEGASLVAKSLKQRDINFLVTS
                     RTFQRAKSFADTVGGEPIPFEKALEILHEIDLIFVSTTAPYYLVTYDRIEKAMSKREN
                     GMMILDLSNPRTVEERVASVSKVKLINMDQIAEIVEKNRRSRKNEIGSAERLIDIEMN
                     SMYSMYKRKKADPIVDSVFKNVDTIRDRELKKAFSILGNKIGPEEYKIIEKLSYAIVE
                     GVLSSPMNNLRKELEKCNEKDDDFMKFIIKLFSYENK"
     gene            2001..3005
                     /gene="hemB"
                     /locus_tag="VHF44_01000"
     CDS             2001..3005
                     /gene="hemB"
                     /locus_tag="VHF44_01000"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0004655 - porphobilinogen synthase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0033014 - tetrapyrrole biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEX2124156.1"
                     /translation="MKTNNNNGNIGFPTVRLRRLRRSPAIRDILQETRLSVKDLICPV
                     FIKEGIEKTQVIESMPDIRRIPISEVIKNIESIADLGIRAILLFGIPSYKDDNATSAF
                     DDKGIVQQSTDIIHKHFGDSIAIITDVCLCQYTSHGHCGIIKNQKVDNDSSIATLGKV
                     AVSHAGAGADFVAPSAMMDGQVKAIREGLDDAGFSDTGIIGYSAKQASPLYAPFRDVA
                     HSTPEFGDRRSYQMPTSNTREALREIEFDINEGVDIIMIKPAIPYLDLIYQAKTTTTL
                     PVCAYSVSGEYALIKAAADEGWIDEDAVMTEFLTSIKRAGANMIITYYAKQMAKLLNG
                     "
     gene            3061..4341
                     /locus_tag="VHF44_01005"
     CDS             3061..4341
                     /locus_tag="VHF44_01005"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEX2124157.1"
                     /translation="MLSRSESLFNRARNVMPYGVNSPVRFYEPYPFFAVSAKGSKIVT
                     ADHDIFIDYCMGYGALLLGHAHPTVTETVKNQLDIGNLYGVPTEKEVKLAELIEEVVP
                     CAEMTRLVNTGAEATMNAIRLARAFTKKKKIIKFDGCYHGSYDYVLVNAGSGAGGFSH
                     SEGSLEETTSQTLVIPYNDSEELDRVITKNEDIACVIIEPVLANMGLILPEKQYLNDV
                     RKITHQNDIILIFDEVITGFRLALGGASEFFGIKPDLATFAKAMGNGFPIAAIAGKKE
                     IMQQLAPLGGVYQASTYAGNPISVSASISTIESLIMAKNEIYPGIAKTCDSLVNGIKD
                     ELEDAKLNFTLNTIGSMFQLFFSGEKVNDSKSAKKSNITNFRLLFDELLKKGIFIPPS
                     QFETCFVSHSHNEDDVYKTIEFYGDALRRIKDNS"
     gene            4338..5288
                     /gene="hemC"
                     /locus_tag="VHF44_01010"
     CDS             4338..5288
                     /gene="hemC"
                     /locus_tag="VHF44_01010"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004418 - hydroxymethylbilane synthase
                     activity [Evidence IEA];
                     GO_process: GO:0006779 - porphyrin-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEX2124158.1"
                     /translation="MTISLKVGTRGSKLAIVQTQIALAALRKSNPSIECEIVTIATRG
                     DVDKRPIFTIDQKGIFEKELNDAVMKGSIDFAVHSLKDLPSDLNDELILASIPKRARP
                     NDVLVNKKKLKLSDLPEGSIVGTSSLRRAIQIIRRRPDLNVKPIRGNVETRVKKSIDG
                     EYDAVVVAEAGLIRLGMKDVIVERFNIRDFMPSPGQGAIAIICRKNNHRLIRLLKSIE
                     DKQSRAEVDAEREMSSKIEGGCRFPVGAIAVTSSDRRQMTLYASVFSADGIRSINLQK
                     SGSIKNPHKLGTMVAEMLIKEDVLKLSEDWHDAVERWNKK"
     gene            5285..>5491
                     /locus_tag="VHF44_01015"
     CDS             5285..>5491
                     /locus_tag="VHF44_01015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX2124159.1"
                     /translation="MKNIGKVFLCGAGPGDPKLITVKAMELLKHCDVVLYDRLVSKDI
                     INQIPAESEKIYVGRAVGDSTAHQD"
BASE COUNT         1888 a          884 c         1152 g         1567 t
ORIGIN      
        1 acgattaaat aaagaattca cctcagtttc tctgttaata gctattggtg tattaattga
       61 ttgttgacct gaatcttgat aataaatatg tcatagtgat aggtggtggc acagaaggtg
      121 taagaaaggt acgtggactt ttaggccaga actgtaaaat tatagttatt agtaaccgtt
      181 ttaatcgata tttgctcaat ctagataaag atggcaagat acaagttatt aaggcaaaat
      241 tgaaagacgc taacatactt gatgattaca aaaatccatt tctgatttta gctgctacta
      301 atgataaatc gctcaatcgc aaacttgttg ataaaggacg tcagatgggt tcatttgtat
      361 atgctgccga tgatcctctc tatagtgact tttcctatgc ctccatcatt aatattgagg
      421 gaataatgca ggttgctata tcaacctctg gtaagagccc tataatggca cgaaaagtta
      481 gaataaaagc tgaacggatt ttaagaagag taatcaaaag atcagatatc gaaaatacaa
      541 aattgcagga gtttgcgcgt attgctgcaa aaccaaagat taaaactgtt gataagagaa
      601 aggaattcct atattctatt atccatgacc aacaaattca gaaccttatt aaggaggaca
      661 gatttgaaga tgctaaaagc acaacgctga agctattgga gaaatgggag aataagaata
      721 aataatgaca ttatcatcta gcatgataca atcattacaa gtaataaatg ccagggtaac
      781 cttcagaaat gctcctattc atcttctcga aaaatttgcc ttcattgata tcgattatgc
      841 atataaaaag attatagaaa attgcaacat cagagaatgt gttatcattc agacatgtaa
      901 cagggttgag gttttcgctg ccggcacagg tccttatgaa aaaaaattgc tagaagtttg
      961 gagttcgata attggcctac ctgttggtga aatagaaaac actgccgaaa ttagcaaaga
     1021 tagagatgtt gttcttcact tgctgaaact ggcatcagga ctggattcat tagtgatagg
     1081 agaagatcaa atactaggtc aggtaaagcg agcatttgac tttgctaata aaaaccatta
     1141 tgtcggctct actcttttgg ttatgtttga tagggcagca aaagtcggta gcaaagttag
     1201 gaccctcact tctctcaata aaggaagtat ttcaattgga tcaattgcag ttaatctagc
     1261 agaagaatac attgaaaatc taaaaagtaa aggtattata cttataggaa caggagaagg
     1321 tgcaagtcta gtagccaagt cattaaaaca acgagatatt aattttctag ttacaagcag
     1381 gacatttcaa agggctaagt catttgctga tactgtagga ggtgagccta ttccatttga
     1441 gaaagcactt gagatactac atgagattga tttaatcttt gtttctacta ctgcaccgta
     1501 ttacttagtt acatatgata ggattgaaaa ggccatgagt aaacgggaaa atgggatgat
     1561 gattttagac ctttcaaatc caagaactgt ggaagaaaga gttgcatcag taagtaaagt
     1621 caaattgata aatatggatc aaatcgcaga gatagtagaa aagaatagac gttctcgcaa
     1681 aaatgaaatt ggttcagccg agagattaat tgatatcgaa atgaattcca tgtatagtat
     1741 gtataaaaga aaaaaggccg accctattgt ggattctgtt ttcaagaacg tagatactat
     1801 aagagatcgc gaactcaaaa aagcattttc aattttagga aataaaatag ggcccgaaga
     1861 atacaagata attgaaaagc tttcatatgc tattgttgaa ggggttcttt cttctccaat
     1921 gaacaacctt agaaaagagc ttgaaaagtg taacgaaaaa gacgatgatt ttatgaagtt
     1981 catcataaag ctgttcagct atgaaaacaa ataacaataa tggaaatatt ggatttccaa
     2041 ctgttaggtt gcgtcgttta agacgaagtc ctgcaattcg cgatattttg caggaaaccc
     2101 gcctctcggt caaggatcta atttgtccgg tatttattaa agaaggaatt gaaaaaactc
     2161 aagttattga atcgatgcct gatatacgaa gaatacctat ttccgaggta atcaagaata
     2221 tagagtcaat tgctgacctc ggaatcagag caattcttct ttttggcatt ccatcttaca
     2281 aagatgacaa tgcaacttct gcctttgatg ataaaggaat tgtacaacaa tctactgaca
     2341 ttattcacaa acactttgga gacagtattg ccattattac agacgtatgt ttatgtcagt
     2401 atacctccca cggtcactgt ggaataataa agaatcaaaa agtagataat gatagtagta
     2461 tagccacttt aggaaaagtt gccgttagtc acgcaggtgc gggagcagat tttgttgctc
     2521 cgtcggctat gatggatggc caagtgaagg ctattcgtga aggtctggat gatgcaggtt
     2581 tttctgatac tggaattatt ggatattctg caaaacaagc atcgccgctt tatgctcctt
     2641 ttagagatgt ggcccattca acgccagaat ttggcgacag aagaagttat caaatgccaa
     2701 ctagcaacac tagggaagca cttcgagaaa tagaatttga cattaacgaa ggcgtggaca
     2761 ttataatgat aaaacctgcc attccatatc tggatcttat ttatcaggct aagactacga
     2821 ctactctgcc tgtctgcgct tatagtgtct ctggagaata tgctttgatc aaagcagctg
     2881 cagacgaagg atggattgat gaagacgccg taatgactga gtttttaaca tctataaagc
     2941 gagcaggtgc taatatgata attacttatt acgcaaagca aatggccaaa ttactgaatg
     3001 gctgatttta agtcacacga tacaattata atgttttgta ggcaagaact ctactattag
     3061 atgcttagca gatcagaatc tttgttcaac agggcaagaa atgtaatgcc atatggagtt
     3121 aatagccctg tacgttttta tgaaccatat ccattttttg cagtttctgc caagggtagc
     3181 aagattgtta cagctgatca tgatatattt attgattatt gtatgggata tggtgcactt
     3241 ttacttggtc atgctcatcc tacagtaacg gaaacggtaa agaatcaact cgacattgga
     3301 aacctctacg gtgtcccgac tgaaaaagaa gtaaagctag ccgaactcat agaagaagtt
     3361 gttccttgcg ccgagatgac aaggcttgta aatacaggcg cagaggcaac tatgaatgct
     3421 attagattag cacgtgcatt tacaaagaag aaaaaaatta taaaatttga tggttgctat
     3481 catggttctt atgactatgt cttggtaaac gctggctcgg gtgctggcgg tttctcgcac
     3541 tctgaaggga gtctagaaga gaccacatct cagactctgg taatacctta taatgattca
     3601 gaagaattag atcgagtaat aacgaagaat gaggatattg cctgtgttat aatagaaccg
     3661 gtattggcaa acatgggtct tatattacca gaaaaacaat atctcaatga cgtcagaaag
     3721 ataacacacc aaaatgacat tattctaata tttgacgaag ttataactgg atttagactt
     3781 gctctaggcg gtgctagcga attctttgga attaaacctg atttggcaac attcgctaag
     3841 gcaatgggaa atggttttcc tatagcagca atagctggca agaaagaaat aatgcagcaa
     3901 ttggctcctc taggtggagt atatcaagcg agcacatatg ctggtaatcc gatttctgtt
     3961 tcagctagca tatctaccat cgaaagtctg atcatggcaa aaaatgaaat atatccaggt
     4021 atcgccaaaa cttgtgattc tttagttaat ggaattaaag atgagttaga agatgccaaa
     4081 ctgaacttta cattaaatac aattggatca atgttccaat tgttctttag tggtgaaaaa
     4141 gtaaatgatt ccaaaagcgc aaagaaatct aatattacaa acttcaggct tctatttgat
     4201 gaattgctta agaaaggtat tttcattccc ccttctcaat ttgagacctg ttttgtttcc
     4261 cattcccata atgaagacga tgtatacaag actatagaat tctacggcga tgctttacgc
     4321 agaataaaag ataactcatg accataagtt tgaaggtagg tacaagaggg agcaagcttg
     4381 ctattgttca gacacaaata gcattagccg cattacgaaa atctaatcct tctattgaat
     4441 gtgaaattgt tactattgct accagaggtg atgtggacaa gaggcccata tttacaattg
     4501 atcaaaaggg aatttttgaa aaagagttaa atgatgctgt aatgaaaggg agtattgatt
     4561 ttgctgttca tagtctgaaa gatcttccgt ctgatcttaa cgatgagcta attcttgcat
     4621 caataccgaa acgagcaaga cctaatgatg tattagttaa taaaaaaaaa ctgaaattga
     4681 gcgatcttcc tgaaggttcg atagtgggaa ctagtagttt aaggcgagcc attcagataa
     4741 tcagaaggcg tccagacttg aacgtcaagc caattcgtgg aaatgtcgag acgagagtca
     4801 aaaaatcgat tgatggagaa tatgacgccg tagttgtagc agaagcaggt ttaattagac
     4861 ttggaatgaa agatgtcatc gtagaaaggt ttaatatcag agattttatg ccatcacctg
     4921 gccaaggtgc aatagcaata atctgtagaa agaataatca tcggctaatt agactgttga
     4981 agagtattga ggataaacaa tctagagctg aagttgatgc tgaacgtgag atgtctagta
     5041 aaatagaggg aggatgcaga ttccctgttg gtgccattgc agttactagc tctgaccgca
     5101 ggcaaatgac actgtatgca tctgtgtttt ccgcagatgg gattagatct atcaatctac
     5161 aaaagagcgg aagtataaaa aatccccata aacttggaac aatggttgcc gagatgctta
     5221 taaaagaaga tgttctaaaa ctttcagaag actggcacga tgcagtggaa aggtggaata
     5281 aaaaatgaaa aatataggca aagtgtttct ttgcggtgca ggacccggtg atccaaagct
     5341 aatcaccgtg aaagcgatgg aacttttgaa acattgcgat gttgtacttt atgatagatt
     5401 agttagtaaa gacattatca atcaaattcc tgctgaatcc gaaaaaatct atgttggaag
     5461 agcagtagga gattcgacag ctcatcagga c
//
LOCUS       DATABJ010000055         2495 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1565461, whole genome shotgun sequence.
ACCESSION   DATABJ010000055 DATABJ010000000
VERSION     DATABJ010000055.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2495)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2495)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2495
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1565461"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..186
                     /locus_tag="VHF44_01020"
     CDS             <1..186
                     /locus_tag="VHF44_01020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEX2124160.1"
                     /translation="VYGHNVAIIGTFEETKLATEAVTMLSKGRSHANVYNMLQEAKRK
                     SKLDRMQLWENDTMRKL"
     gene            587..847
                     /locus_tag="VHF44_01025"
     CDS             587..847
                     /locus_tag="VHF44_01025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124161.1"
                     /translation="MSDGTGKNSDKYSVPKLTYYTASTIVAMVMAIPGIIALLLMRSY
                     TTDIATQIVISSIVFFVGMGFSFKIAKKIADNMSKNKATDSR"
     gene            complement(844..1404)
                     /locus_tag="VHF44_01030"
     CDS             complement(844..1404)
                     /locus_tag="VHF44_01030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiX family flavin prenyltransferase"
                     /protein_id="HEX2124162.1"
                     /translation="MRLIVAITGSSGVIYGIKTLEVLRDLKLESHLIMSEWGKRNVTI
                     ETDRSIDYVKSLAFKYYSNDNMAAAISSGSFKTDGMVIIPCSMKTLSSIANGYDDNLI
                     SRAAGVCIKESRKLVIVPRETPLSRIHLENMLKLSQTGVIILPAMPGFYYKPKTMDDM
                     ITHIVGKMLDQFGIEHNIFRRWTEHY"
     gene            1505..2401
                     /locus_tag="VHF44_01035"
     CDS             1505..2401
                     /locus_tag="VHF44_01035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEX2124163.1"
                     /translation="MLTVFGTIALDTTRTPFRTEIKIMGGAATFASLSSSFYTHTSLV
                     GVTGFDFPTHYREILDKRVDTKGIITNLQEKTFHYDSTFDYGLSHRTTNKTELNVISH
                     FEPTIPDEYQKSEYIYLANNDPIQNIKLLEFFPNPKLTVCDTIEYWILNKRDEVIKMM
                     SKVNGVVINDEEARLLCKTTNLIKCAKMIMSWGPHFTVIKKGEHGSLLFMDDYIFPAA
                     AYPMEEIVDPTGAGDAFAGGFIGYLAQQDNLRVSTFKEAVVHGNVMGAFAVEDFGVKR
                     LVSITKDDIQKRFEIYRKIVEF"
BASE COUNT          832 a          420 c          439 g          804 t
ORIGIN      
        1 gtctatggtc ataatgtcgc aatcattgga acttttgaag aaaccaaact tgctactgaa
       61 gctgtgacta tgctctcgaa gggaagatct catgctaatg tctacaatat gttgcaagag
      121 gcaaaaagga aatctaagtt agacaggatg cagttatggg aaaatgatac aatgcgtaaa
      181 ctatagtatc tggattcaat ttgctgctga tgataataat gatcaatact acagaaacca
      241 gctaaacaaa gttaacttct tttttctgta actgttctga aactcaacga caaagaaaac
      301 agcagttgaa ttaatcaata aaattgatct ttatataaat aagctaggag aaatatgctt
      361 ctcactaaca tccaattcaa taatgttcct atcatagttt ctaatttcgg taaaaaaagc
      421 atgtattcat cataatatat tgacctgagg atttgttata ccctctaatt gcaatgataa
      481 tatatttaat gactatatcg attgcaatac attattgttt gtcaatcgat attttattta
      541 cggtacaaat ataatttata tggtctcttt gagacatatc taattattga gtgatggtac
      601 cggcaaaaat tcagacaagt attctgtccc gaagttaacc tactatactg caagcacaat
      661 agttgcaatg gtaatggcga taccaggcat tatagctctg ctgttaatga gaagctatac
      721 tacagatatt gctacccaaa ttgttattag ctcaattgtc ttttttgtag ggatgggatt
      781 ttcatttaaa atagcaaaga aaattgctga taatatgagt aagaataaag cgactgactc
      841 acgttaataa tgttctgtcc atcttctaaa aatgttatgt tcaataccga attgatcaag
      901 catctttcct acaatatgag ttatcatatc atccatagtc tttggtttgt agtaaaagcc
      961 aggcattgca ggtaatatga tcacacctgt ttgagatagc ttaagcatat tttcgagatg
     1021 tattctagaa agaggtgttt cccttggtac aattactaat tttcgtgatt cttttataca
     1081 tacacctgcc gccctagata taagattgtc atcatagcca tttgcaatac ttgacaatgt
     1141 tttcatgcta catggaatga ttaccatccc gtccgtttta aaagatccac tggaaatagc
     1201 agcagccata ttgtcattgc tgtaatactt aaaagcaagc gatttcacat agtcgatact
     1261 tctatctgtt tctattgtta cgtttctctt tccccattca ctcatgatta aatgtgactc
     1321 gagcttaaga tctctcaata cttcaagtgt cttaattcca taaataacac ccgaactgcc
     1381 ggttattgct acaataagtc gcatcacttc aattgcgcgc ttattttgat atatatttga
     1441 tcatataata tattgaagag aatcaaggtt tatttacgta gaaagaaaac cttgactttg
     1501 gggcatgtta acagtctttg gaaccattgc attagataca actcgcacac cttttagaac
     1561 tgagataaaa attatgggag gtgccgccac ctttgcatct ctttcatcta gcttctatac
     1621 acatacttcg ctagtgggag taacaggttt tgattttcca actcattata gagagattct
     1681 cgacaagagg gtagatacaa aaggaattat cactaaccta caagaaaaaa cattccatta
     1741 tgattctacg tttgactatg gcctttctca tagaactact aataaaacag aattgaatgt
     1801 aatatcacat tttgaaccta caatacccga tgagtatcaa aaatcagaat acatttatct
     1861 tgctaataat gatcctattc aaaacataaa gttactggaa ttttttccaa atcccaaatt
     1921 gactgtttgt gatacgatcg aatattggat tctaaacaaa cgggatgaag taattaagat
     1981 gatgagcaaa gttaatggag tagtcattaa tgatgaagaa gcaagattat tgtgtaagac
     2041 gactaacctg attaaatgcg ccaaaatgat aatgtcatgg ggaccacact ttacagttat
     2101 aaaaaaggga gagcatggtt cattgttatt catggacgac tacatttttc ctgcggcggc
     2161 ttacccaatg gaagaaatcg tggatccaac tggcgcagga gacgcttttg ctggcggatt
     2221 tattggttac cttgctcagc aagataatct tagagtcagc acattcaagg aagcagtagt
     2281 tcatggaaat gttatgggag cattcgctgt tgaagatttt ggggtgaaga gattagtttc
     2341 gattactaag gacgatattc agaaaaggtt tgagatatat cgcaagattg ttgaatttta
     2401 gtaatttttc agctatattt taaatattaa ataagaaatt cgacgaacaa attacttcag
     2461 cggaagagtg caataaacat tcatgtcttt ctgag
//
LOCUS       DATABJ010000056         3044 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1345407, whole genome shotgun sequence.
ACCESSION   DATABJ010000056 DATABJ010000000
VERSION     DATABJ010000056.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3044)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3044)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3044
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1345407"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            72..1280
                     /locus_tag="VHF44_01040"
     CDS             72..1280
                     /locus_tag="VHF44_01040"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000287 - magnesium ion binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006261 - DNA-templated DNA replication
                     [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEX2124164.1"
                     /translation="MQHSDNTSTPRIIIHIDFDYFFAQCEEIKSPEIKDKPVVVCIYS
                     GRTKESGVVSTCNYIARNYGIKSGIPIKIAKAKLAQVSQAVFLPSDIKHYSEKSDNAM
                     TLIRDFLDNYSLSSARSNVFQPIECAKFEYIGLDECFVEVTEKADFDFAKAKELANNL
                     KKQIRKETRLTCSIGIAPNKMIAKIASDFQKPDGMTIVEPDEAKNFISNCNVDKIPGI
                     GPKTSAKLLEMGIRTGGELSAFGLFRLIDAFGKKYATYLYNSAQGIDNEPVKSRGLAK
                     QIGRIITLKKDISQTSEIEGELEYICKSVYKMALDQNVLFRNIGILLILNDLDNITRS
                     KSLKTHSRDFNELYSSVKSILNVTLNNYPNIKVRRLGIKISDLKDNEGQNTMLNFINN
                     NNNVIDTKTQ"
     gene            complement(1395..2405)
                     /gene="artG"
                     /locus_tag="VHF44_01045"
     CDS             complement(1395..2405)
                     /gene="artG"
                     /locus_tag="VHF44_01045"
                     /inference="COORDINATES: protein motif:HMM:TIGR04297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thaumarchaeosortase"
                     /protein_id="HEX2124165.1"
                     /translation="MFDKKKSVSFDRKKDLKKFRINSSIIVTLLLIAPIMFTLIAYPD
                     TFYLSWNVGRGGLLFAMVFIAAEVIGSNQKINNKKFYLIIGLLSLTVGYFIAIEELGL
                     KESIRAAAPIYNVQIQESWTLMWDFIIIVLYVSICLSILYGKKGFKIAPAGLVFIAGI
                     VVILSLDAFFPKDTLGPLQYIVPIYLQIDESVIRLIDSSIVDLGPDGPLVSARDNMLT
                     LNGLQGRMNLIVFWPSAGVHSMIIYSLIMLIFFLKMRIPLKRKLTYFVIGTIGTAVIN
                     IIRILSLSLFALIVSANPISWQSFHSIAGEIIFIPWLFIYVYSVLFLENRLARKLQAL
                     KV"
     gene            complement(2456..>3044)
                     /locus_tag="VHF44_01050"
     CDS             complement(2456..>3044)
                     /locus_tag="VHF44_01050"
                     /inference="COORDINATES: protein motif:HMM:NF024703.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016818 - hydrolase activity, acting on
                     acid anhydrides, in phosphorus-containing anhydrides
                     [Evidence IEA];
                     GO_process: GO:0006139 - nucleobase-containing compound
                     metabolic process [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="helicase C-terminal domain-containing protein"
                     /protein_id="HEX2124166.1"
                     /translation="SNFPLKNRPIYLMNVAWLNAKTMNQSLPAIANAVNNIMTTHKNE
                     KGIIHITSYSQLRFIKENISKENAIRLIETGSKLDRNEMLEKHYKSSKPTVLISPSLY
                     LGVDLKDNFSRFQIIVKVPYADLTDRKISVMKQRDPNWYTWNAILKLIQAYGRSIRSK
                     EDFANTYILDSSITYLLKQAKEMSPKWFSDAIIQR"
BASE COUNT         1063 a          496 c          509 g          976 t
ORIGIN      
        1 acaaaaattc atacagaatt cagttaccaa tttagttata ttcttgaaaa tctgcagtaa
       61 gaatagagaa gatgcaacat agcgacaata catcaactcc caggataata atccatattg
      121 actttgacta tttctttgcg cagtgtgaag aaataaaaag tccagaaata aaagataaac
      181 ctgtagttgt ttgcatctat tctggtagga ctaaagaaag tggagtggtt agtacttgta
      241 actatatagc aagaaattat ggaatcaaat cagggattcc aatcaagata gcaaaagcaa
      301 aacttgctca agtgtcgcaa gcagtatttc tgccttcaga tataaagcat tattctgaaa
      361 aatcagataa cgcaatgacc ttaatacgtg actttttgga caactactct ttatcgagtg
      421 ctcgttcaaa tgtttttcag ccaatagaat gtgcgaaatt tgaatatatc ggattagatg
      481 aatgttttgt agaagtaaca gagaaagctg attttgattt tgcgaaagca aaagaattag
      541 caaacaatct taaaaaacag ataagaaaag aaactcgatt gacatgttca ataggtattg
      601 ctcctaataa gatgatagca aagatcgcat ccgactttca gaagccggac ggaatgacta
      661 ttgtcgaacc agatgaagcg aaaaatttta tttctaattg taatgtagat aaaatcccag
      721 gcatcggtcc taaaactagt gctaaattgc tcgaaatggg aatacgaaca ggcggcgaat
      781 tgtcggcctt tggtttattc aggttaattg atgcctttgg aaaaaaatat gcaacctatc
      841 tttacaactc cgctcaaggt attgataatg aacctgtcaa atcacgagga ttagcaaaac
      901 agatcggtag aataattaca ttaaagaaag atatttctca aacctctgaa atcgagggtg
      961 aactagagta tatatgcaaa tctgtataca aaatggcatt agatcaaaat gtcttattta
     1021 gaaatatagg tattttgtta atcttaaatg acctcgacaa tattacccgt tcaaagagtt
     1081 tgaaaaccca ttcaagagac tttaatgaat tgtattcatc tgtaaagtca atattgaatg
     1141 tgacactaaa taactatcca aatatcaagg tcagaagatt aggaattaag atatctgatt
     1201 tgaaggataa tgaaggtcag aatacgatgc ttaattttat taataataat aataatgtta
     1261 tcgatacaaa aacacaatga atcagtgtca acattttctt tgattagttg acatttttac
     1321 tattaggaaa attgaaagtg catcagttca tactatattt taaaggatat cttggagtat
     1381 atatgatata tggcctacac ctttaatgct tgtaactttc ttgctaatct attctcaagg
     1441 aagagaacac tatatacata tatgaacagc caaggtataa agataatttc tcctgcaata
     1501 gagtgaaatg attgccatga gataggattt gcagatacaa ttaatgcaaa taatgataat
     1561 gagagtatgc gtattatatt tatcacagca gtccctatag tacctattac gaaataggtc
     1621 aattttctct ttaatggaat tctcattttt agaaaaaata tgagcatgat tagactataa
     1681 atgatcatac tatggacccc ggctgatggc caaaatacta tcaaattcat ccgtccctgt
     1741 aaaccattca aagtcaacat attatctcgt gcagacacta gtggaccgtc tggtccaagg
     1801 tccacgatgg agctgtcgat aagtctgatt acactctcat ctatttgtaa atagataggt
     1861 acaatatatt gaagaggacc aagggtatct tttggaaaga atgcgtcaag tgacaagatt
     1921 actacaatcc ctgctataaa taccaatcct gcaggagcaa ttttgaatcc tttctttcca
     1981 tataatatag atagacaaat acttacataa agcacgatta tgatgaagtc ccacataagc
     2041 gtccagcttt cctggatctg aacgttatag ataggcgcag cagctctgat tgactctttg
     2101 agtcctaatt cttcaatagc aataaaatat cctactgtaa gactcaataa acctattata
     2161 agataaaatt tcttattgtt gatcttttga tttgacccaa ttacttctgc tgcaataaaa
     2221 accatagcaa acaaaaggcc tccacgtccc acattccatg ataggtaaaa tgtatcagga
     2281 taagcaatca aagtaaacat aataggcgca atgagaagaa gagtaacgat tatacttgaa
     2341 ttgattctaa atttctttaa atctttcttt ctatcaaaag aaacactttt ctttttatcg
     2401 aacaaacaca gccgccttta tagtttttta atataaataa aaatatctta tactattatc
     2461 tttgtataat agcgtctgag aaccattttg gggacatctc cttggcttgc ttcaataagt
     2521 aggttatact gctgtcaaga atataggtat ttgcgaaatc ttccttgctt ctaatgcttc
     2581 taccgtatgc ttgtattaac tttaaaattg cattccacgt ataccagttt ggatcccttt
     2641 gtttcataac agaaattttc ctatcagtaa gatctgcata gggcactttc acaataatct
     2701 ggaatctaga aaaattatcc tttagatcta ctccaagata taacgatgga gatatgagta
     2761 ctgttggttt tgaactttta taatgttttt ccagcatctc atttcgatct aattttgatc
     2821 ctgtttctat aagtctaatt gcattttctt tgctaatgtt ctcctttata aatcgaagtt
     2881 gagagtaaga tgtgatgtga ataattcctt tttcattttt atgtgtggtc atgatattgt
     2941 taacagcatt ggctatggca ggtaaacttt gattcattgt ttttgcatta agccaggcaa
     3001 cattcataag ataaatcggt ctatttttta gagggaaatt tgac
//
LOCUS       DATABJ010000057         2729 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_480971, whole genome shotgun sequence.
ACCESSION   DATABJ010000057 DATABJ010000000
VERSION     DATABJ010000057.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2729)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2729)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2729
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_480971"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..515
                     /locus_tag="VHF44_01055"
     CDS             <1..515
                     /locus_tag="VHF44_01055"
                     /inference="COORDINATES: protein motif:HMM:NF039482.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124167.1"
                     /translation="DSIDDAINSILAHHYFYDSRLRIQASVDGTTTPAALNDFLFTRI
                     NLTRTPTLSLRFMNHEMKERMDGILVSTPTGSTGHSFSIGSPVIHESLNCFMISPVAS
                     VNRMPQIIIPPTEEIEIKSNHDANLIIDGQEVLRVIAGQSVKISRFYPDAEFIRIHKK
                     GMRQLAKLGF"
     gene            496..999
                     /locus_tag="VHF44_01060"
     CDS             496..999
                     /locus_tag="VHF44_01060"
                     /inference="COORDINATES: protein motif:HMM:NF028455.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN domain-containing protein"
                     /protein_id="HEX2124168.1"
                     /translation="MQNSASNISVIDASAFYSGFPFLTLSKCYTTNSILNEIKHMNRK
                     YGAIELLIDSDRLKILEPNKECLRQVITIAKKTGDYEKLSTADVSILALAFQLKSTLI
                     SDDYAVQNIAAILNIPVGTIGTKGITKVRRWTKFCSACSKAYGPNISQCMLCGNTLRR
                     RFKNKSI"
     gene            1293..>2729
                     /locus_tag="VHF44_01065"
     CDS             1293..>2729
                     /locus_tag="VHF44_01065"
                     /inference="COORDINATES: protein motif:HMM:NF014763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEX2124169.1"
                     /translation="MQTTFWNQNIALLFIIAAAGVTLAVVSYQYSSFTAAEIAKIASQ
                     DVKSNARIQAYDLSRILFRSIDSITSNLQIITNSPAIQNNETESAQTLLTTAQDSTST
                     LTNAYYWLDKDGQVVTWSNRNDTINQIGGKLDLSYRQYFVIPKERHLPYHSSEVESSD
                     NVPRLYVSLPILDNQKEGKGGADNNDEVETFKGVVVAAINVSTLGKFLQNEISPEFIS
                     NVGLMDKNGIILYARNQSLIGKDYLGKEFQSLIPSEIKKQYNAILGRSLQDKANAEQI
                     TFNGEMTTISYQPVLIEGKHLWTLFISFPHKLASNVGDLIEQQKNFSTLMVIIIGAIA
                     VGIAFLILSWNRRLEAAVNSRTTELKKVNISLTESNKLLAAANEQLKVHDKMQKEFIN
                     IAAHELRTPIMPILGEAEFIEHQFNRKRKTVEIEKEQISMIIRNAKRLDRLASDILDV
                     AKIESQSLKLNKERFNLKEVLESAVQDLV"
BASE COUNT         1007 a          421 c          487 g          814 t
ORIGIN      
        1 tagattcaat agatgatgct attaattcaa tactagcaca ccattatttt tatgattctc
       61 ggctcagaat acaggcatca gtagacggta ctacaactcc tgctgcattg aatgattttt
      121 tgtttacaag aataaatttg acgagaacac ctactttatc tctaagattt atgaatcatg
      181 aaatgaaaga gagaatggat ggtatccttg tttcaactcc tacagggtca acaggtcact
      241 cattttctat tggtagtcca gttatacatg aaagtctgaa ctgttttatg attagtccag
      301 ttgcatcagt taacagaatg ccacagataa taatccctcc gactgaagaa atagaaatca
      361 agagtaatca tgacgcaaat ctaataatag acggacagga agtattaagg gtgattgcag
      421 gacaaagcgt aaagatttcg cgtttttatc ctgatgcaga atttattcgt atccataaaa
      481 agggcatgag gcaacttgca aaactcggct tctaacattt cggttataga tgcaagcgca
      541 ttttattccg gttttccttt tctaacctta tcgaaatgtt atactacgaa ttcaatttta
      601 aatgaaataa aacacatgaa tcgaaaatat ggtgcaatag aacttctgat agattcagat
      661 agattaaaaa tattagaacc caataaagaa tgtctccgac aagttataac aatagcaaaa
      721 aaaactggtg attatgaaaa actttcgact gcagatgtat caatacttgc tctagccttt
      781 cagttaaagt caacattgat ttccgatgat tatgcggtac agaatattgc tgccatttta
      841 aatattccag tagggactat tggaactaaa ggtataacaa aagttagaag gtggacaaag
      901 ttttgtagtg catgtagtaa agcctatgga ccaaatatca gccaatgtat gctttgtgga
      961 aatacactca gacgtcgttt caagaataaa tctatttgag ttttgtacat aagatcatat
     1021 gagcataaat aaataaataa ataaataaat aaaaagtgcc attatattgt ataatgaata
     1081 tgcattgtat acgcatcttt tgcgtagatt ataagagtat attatatatg ttatatacat
     1141 gatatgagac ggcattatat aaattaaaaa atttgcctct agatgataga caaagatgta
     1201 tgtttctgcc tatcaaatgg aatttataaa atattatata ttgatgttat ttatttaata
     1261 aggacaacta caattattga tataaattat tgatgcaaac aacattctgg aaccagaaca
     1321 tagcgttact ctttataata gcagcagctg gagtaacttt agcagtagtt tcctatcagt
     1381 attcatcttt tactgcagct gaaatagcca aaattgcttc acaagatgta aaatcaaatg
     1441 ctaggataca agcatatgac ttatcgcgta tcttatttcg tagtattgac tcaataacat
     1501 ctaatttaca aattattaca aactcaccag ctatccaaaa taatgaaaca gaatcagcac
     1561 agactctttt aactacagca caagattcga caagtacatt aaccaatgca tattattggc
     1621 ttgataaaga tggtcaggta gttacatgga gtaatagaaa tgatacgata aaccaaattg
     1681 gcggtaaatt ggacttgagt tatagacaat actttgtcat accgaaagag aggcatttgc
     1741 catatcatag tagcgaagtg gaatcttctg ataatgtccc tagactatat gtctctcttc
     1801 caatactgga taatcaaaaa gaaggtaaag gtggagccga taataatgac gaagttgaaa
     1861 cattcaaagg agttgtcgtt gcggcaatta atgtaagcac tttaggaaag tttttgcaaa
     1921 atgaaatttc gccagaattt ataagcaatg taggactcat ggacaagaat gggataattt
     1981 tatacgcacg aaatcaatcc cttataggta aagattattt aggaaaagaa tttcaatcat
     2041 tgattccatc ggagataaag aaacaatata atgcaatttt gggacgctca ttgcaagata
     2101 aggcgaatgc tgaacaaatt acattcaatg gtgagatgac tacgatatca taccagccag
     2161 tattgattga aggaaagcat ctatggacac tttttattag cttcccgcat aagctcgcaa
     2221 gcaacgtcgg cgatctgata gagcaacaaa agaatttcag cacgcttatg gttattataa
     2281 ttggtgcaat agcagttggc attgcatttt taattttatc ttggaatagg aggttggaag
     2341 ctgccgtaaa cagtagaact acagagctca aaaaagtaaa catctcgtta acagagtcaa
     2401 ataagctact tgctgcagca aacgaacaat tgaaagttca tgacaaaatg caaaaggagt
     2461 ttatcaatat agcagctcat gaattgcgaa ctccaataat gccaattctt ggagaggcag
     2521 aatttattga acatcaattc aatcgtaaaa ggaaaactgt tgaaatagaa aaggaacaaa
     2581 tttcaatgat tattcgaaat gcaaaaagat tagatcgact tgcatcagat attcttgatg
     2641 ttgcaaaaat tgaaagccag tcgcttaaat tgaataaaga aagatttaat ctaaaggaag
     2701 ttttagaatc tgctgtacaa gatcttgta
//
LOCUS       DATABJ010000058         2717 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_481375, whole genome shotgun sequence.
ACCESSION   DATABJ010000058 DATABJ010000000
VERSION     DATABJ010000058.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2717)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2717)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2717
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_481375"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            356..1813
                     /locus_tag="VHF44_01070"
     CDS             356..1813
                     /locus_tag="VHF44_01070"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX2124170.1"
                     /translation="MALVKRDYDIIVAGGGLAGMIVACSAAYYSRESLRILIVDRNEL
                     SNMGKKTVSGWICGDAVGKNTVDYMSSRIGIEWRYPEIEHPVKGVIAYSPNHETAISF
                     DGEGYILNRRLLPQKQMKDALKAGVEVRDQVVLRSLIIENNNVIGVEGEDKLNKSLFK
                     KTAKIVVDCTGVTSVLRNNLTIKSYIQRRIDRDDLEATGRYIYNFDIGDQDDTFFNPD
                     YCIIHLDQKLAPGGYGWVFPKGKDKVNIGLGVQQKAFERRNKEMGIHKDLKTLIDEYV
                     EINPVIANPKIADSDKDEGNGWGTWQVSVRRQNDCMVANGYMLVGDSAWMPKPLDAGG
                     IGPAIIAATIAGKDAVEAIESGDVTEKGLWKYNKDYINDYGYKTAGLEVFRRMLQGLT
                     NEQIDYGMKHFLSKMDIDKITNGEHPQFSNVDKLAMVIRGAVNKRLADGLKFTASMNE
                     KLVDLYKNYPSDPQGFQDWQRLLNGYLNEAFTKLK"
     gene            complement(1951..2583)
                     /locus_tag="VHF44_01075"
     CDS             complement(1951..2583)
                     /locus_tag="VHF44_01075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEX2124171.1"
                     /translation="MSFTNVHSSLDEINGELRNVEERRETLIKNTRDVIILCSKSIVS
                     LHNNEIDEARNKISQATVMLDKFREYAKADLHKYIAVAEQELVEACMLKSIVEESSLP
                     SKKELNVLGSSYLTGLLDCIGEIKRMVYDKMRVGKAGDATKLFATMQDLYSIVYPFSV
                     YDNLIPGLRRKLDVSKMLIEDIRAVITEETRRAIMIDAVDNLQKNFLNKH"
BASE COUNT          911 a          425 c          540 g          841 t
ORIGIN      
        1 gagattagaa tattttatta aaaagataat aataataaca aattttttta aactgattga
       61 tagttgtaat gccttaattt aagtttgaga tcatcaaatt aattaggaat tattaataac
      121 attattgtca gataaaataa ggaagaatat tgaagtaccg atgaactata gaaactatta
      181 tgccttaatt atcacaattt ctacatctca gcagatggga catagattta agttgtatta
      241 cataggatga aaaacgaatc cgaaaatatg ttttgaatgc atttctttct catctaacta
      301 ttaaactatg acttagcttt aaatagagtt cagacatttc agccgttgta attcgatggc
      361 attagtaaaa cgagattatg atattattgt tgctggcggc ggtctagcag gcatgatagt
      421 tgcatgctct gcggcttatt attcgaggga atctcttcga atccttattg tagatagaaa
      481 tgagttatct aacatgggaa agaaaacagt gtcaggatgg atatgtggag atgctgtggg
      541 taaaaatacc gtagattata tgtcaagtcg aattggaatt gaatggagat atccagagat
      601 tgagcatcct gtaaagggag taattgcata ttctccgaat catgaaaccg ctatttcttt
      661 tgatggggaa ggttacatcc ttaatagaag acttttacca cagaagcaga tgaaagacgc
      721 attaaaagca ggcgtggagg tcagagatca agtagtacta cgttccttga tcatagaaaa
      781 caataatgtt ataggagtag aaggtgagga taagcttaac aaatcgttat tcaaaaagac
      841 agccaaaatt gttgttgatt gcacaggtgt tacttctgtt ctacggaata atttaacaat
      901 aaaatcatat attcaacgca gaattgatag agatgatcta gaagcaactg gtcgttatat
      961 ctataatttc gacattggcg atcaggacga tacattcttc aatcccgact actgcataat
     1021 ccatttggat caaaaactag cccctggagg atatggttgg gtatttccga aagggaagga
     1081 taaagttaac attggccttg gcgtacagca aaaggcattc gaaagacgca acaaggagat
     1141 ggggatacac aaagatctta aaacgctaat agatgaatat gtagaaatta atcctgtaat
     1201 tgctaatcca aaaattgctg actcggataa agacgaaggc aatggttggg gaacctggca
     1261 ggtttcagta agaagacaga atgactgcat ggttgcaaat ggttatatgc ttgttggaga
     1321 ttctgcatgg atgccaaaac cactcgatgc aggcggaata ggtcctgcaa ttatagctgc
     1381 gacgattgct ggaaaagatg cagtagaagc aatagaatct ggggatgtta cagagaaagg
     1441 tttatggaaa tataataagg attacattaa tgactatggc tataagaccg ctggactcga
     1501 agtattccgt cgaatgctac aaggtctgac aaatgagcag attgactatg gcatgaaaca
     1561 tttcttgtct aaaatggata ttgataagat cacaaatggc gaacatcccc aatttagcaa
     1621 tgtggataaa ttggctatgg ttatacgagg agcagtaaat aagaggttgg cagatggtct
     1681 aaaatttact gctagcatga atgaaaaatt ggtcgatctt tataaaaact atccatcgga
     1741 tcctcaggga tttcaggatt ggcaacggct tctgaatggc tatcttaatg aagcatttac
     1801 gaagttgaaa taattgattc acatgtatga actgataagt cttatgatgt catttattcc
     1861 aagacaggca ttatacaagt atggaaataa tattaattag ctcaaaaagc ggttcctctg
     1921 caatttgaaa aactagaaaa taggagtagg ctaatgctta tttaaaaaat tcttttgcaa
     1981 attgtcgaca gcatctatca ttattgctcg tcttgtttct tcggtaatga ccgctctgat
     2041 gtcttctatg agcatttttg atacatctag ttttctcctc aagcctggga ttaaattatc
     2101 ataaactgaa aagggataaa ctatgctata aagatcttgc atagtagcaa ataactttgt
     2161 agcgtctccg gcttttccta ctctcatttt gtcatatacc attcgtttta tttcacctat
     2221 gcagtctaac aatccagtca gatatgatga acctaataca tttagctctt ttttacttgg
     2281 taatgaagat tcttcaacaa tagactttag catacaagcc tctaccaatt cctgttcagc
     2341 aactgcaata tacttgtgca gatcggcttt ggcatattct ctaaacttat ccagcattac
     2401 agttgcttgg cttattttgt tacgcgcctc atctatctcg ttgttgtgca gggagacgat
     2461 tgatttgcta cagagtatga ttacatcacg tgtattttta attaaggtct ctcttcgttc
     2521 ttctacattt cgaagctctc cattaatctc atcaagtgag ctatgaacat ttgtaaatga
     2581 cataactaca tttagaaaga attaaataaa gactttgcca ttatgatgga aatttgtttt
     2641 gcgccgtaga atgtgtctat atctatagat actcttcaaa ataacaatgg gataaagaat
     2701 atagatgacg aaaatat
//
LOCUS       DATABJ010000059         1878 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_39874, whole genome shotgun sequence.
ACCESSION   DATABJ010000059 DATABJ010000000
VERSION     DATABJ010000059.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1878)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1878)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1878
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_39874"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            128..1072
                     /locus_tag="VHF44_01080"
     CDS             128..1072
                     /locus_tag="VHF44_01080"
                     /inference="COORDINATES: protein motif:HMM:NF013528.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEX2124172.1"
                     /translation="MTHEQDVDGLFSSAILKNAFPDTLVFLTNYGHKNMQRAATIIKF
                     NVSRSSKNGTIVITDLGIDDTEDIKPIEDAAVDARNYGWDFVWLDHHVWSEEIKKRAQ
                     SFASLILSKDEMKCTAELVYETFAKNRRTCEKIAKFAHIVDFRLSEVHKLPPLPELIS
                     YYRSLTNPYPKLQSIVNKASKGVFWDDDLQEDFEHLYLPIRESTIAAAMKSLTIRDIY
                     NIKVAITESPRIISKSILSEKIFLEKPEVSLVILFAPDGKVSIRRKPGSDIKCDVIGR
                     RLDGGGHSYAAAGIIKNSNESLKIGQVSQAIEAILKDL"
     gene            complement(1367..1738)
                     /locus_tag="VHF44_01085"
     CDS             complement(1367..1738)
                     /locus_tag="VHF44_01085"
                     /inference="COORDINATES: protein motif:HMM:NF015332.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pYEATS domain-containing protein"
                     /protein_id="HEX2124173.1"
                     /translation="MQCIKWPAKIIVRNSSKSYRNDMGEQWFYWKIFIETEPPSLINQ
                     IQAVEYHLHPTFRLKDILITNKNTGFRLEAQGWGEFVIKMDVILNDNRSTTINHYLSL
                     DDSASKEKKETVKIVNEKDFT"
BASE COUNT          662 a          300 c          316 g          600 t
ORIGIN      
        1 aaaaattaaa attctttcat ttcatcaata taaacatcct ttcttattgt aactatcatt
       61 tattatatgg taaagggata aaaagaaaaa aagaagaata atgactaata ctaaaagaat
      121 tttatcgttg acacatgaac aggatgtgga tggattattt tctagtgcaa ttttaaagaa
      181 tgcttttcca gatactttag tttttcttac aaactatgga cacaaaaata tgcaaagagc
      241 tgctaccata atcaaattta atgtgtctag atcaagcaag aatggaacaa ttgtaatcac
      301 cgatttaggt atcgacgata cagaagatat caagcctata gaagatgccg ctgtcgatgc
      361 aagaaattac ggttgggatt tcgtatggct agatcatcat gtttggtctg aggaaataaa
      421 aaaaagagcg cagtcgtttg cgtctttgat cttatcaaaa gatgaaatga aatgtacggc
      481 agaattagtt tatgaaacat ttgcaaaaaa tagaagaaca tgtgaaaaga tagctaaatt
      541 cgcacatatt gttgattttc gtttgtctga agtgcacaag ttaccacccc ttcctgagct
      601 tattagctat tatcgtagtc taactaatcc ttatccaaaa ttgcagtcta tagtaaataa
      661 agcctctaaa ggtgtatttt gggacgacga tttgcaagaa gactttgaac atctatacct
      721 tccaataagg gaatctacca tagccgctgc gatgaaatct ctcacaatac gcgatatcta
      781 taatatcaaa gtagccatta cagagtcgcc aagaataata tctaaaagca ttttgtcgga
      841 aaaaatattt ctagagaaac cagaagtaag tcttgtgatt ctattcgctc cagatggaaa
      901 agtaagtatc aggagaaagc caggatcaga tataaaatgt gatgttattg gcagaagatt
      961 agacggagga ggccatagtt atgcagcagc aggtataata aaaaatagta atgaaagtct
     1021 aaaaatagga caagtatcac aagcaataga ggccattttg aaagacttat agttgacaat
     1081 tatattagtt tcaaaacaag tattatagag ataaaattcc ttcttaaaaa tttcatcaga
     1141 aaaccaagtc aatactcgtc aatatatgag tgttgattat gattaaaagg aggatggcct
     1201 tgttcttgtt tttactatgg gttataactt gagcaacacc acgtgaatag gaacagcata
     1261 cttaagccat cccaccacag aatctctttt cttcatggtt gtctttttat ggaacagccg
     1321 ttaggatcat tgttatgcta tcgttttaac tatccgcatt aatatatcaa gtaaagtcct
     1381 tttcatttac tatcttgaca gtttcctttt tctccttact agcagaatca tcgagcgaca
     1441 ggtaatggtt tatagtggta cttctattat cattaagaat aacatccatt ttaattacga
     1501 attctcccca tccttgggcc tcaagcctaa atcctgtatt tttatttgtg atcagaatgt
     1561 ctttaagtcg aaaagtcgga tggagatgat attctacagc ttgtatttga tttatcaatg
     1621 atggcggttc tgtctcaatg aaaatcttcc agtaaaacca ctgttctccc atatcattac
     1681 gatagctttt gctactattt ctgacaataa tttttgcagg ccatttaata cattgcatgc
     1741 ctttaattta ttaattgcat aatttcctat tataaagttc attacaatgt tgttttaatc
     1801 ataattctag gcttatctat aaagaaaaaa attaaacaaa aaacaaaatg gataaaacct
     1861 gaagaggttg cataaaat
//
LOCUS       DATABJ010000060         1789 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_481604, whole genome shotgun sequence.
ACCESSION   DATABJ010000060 DATABJ010000000
VERSION     DATABJ010000060.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1789
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_481604"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..328
                     /locus_tag="VHF44_01090"
     CDS             <1..328
                     /locus_tag="VHF44_01090"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124174.1"
                     /translation="VADIRDVTINSQEERVIRTQGDANPSSIPGVDFPITEKDYIGKV
                     AFVIPGIGVITRAISPPVNYIIIAAILAILLFSHLKRKKDAEPSAPDGTERGDSSSPA
                     TGSPPN"
     gene            453..698
                     /locus_tag="VHF44_01095"
     CDS             453..698
                     /locus_tag="VHF44_01095"
                     /inference="COORDINATES: protein motif:HMM:NF014009.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjbQ family protein"
                     /protein_id="HEX2124175.1"
                     /translation="MHINATSIFINDDETGLREDFERWIEIFYPHKGINKYKHNRTGE
                     DNEDAHLKRQIMGREVVIAITKGNLDFPVRTSILWRI"
     gene            complement(1046..>1789)
                     /locus_tag="VHF44_01100"
     CDS             complement(1046..>1789)
                     /locus_tag="VHF44_01100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TGS domain-containing protein"
                     /protein_id="HEX2124176.1"
                     /translation="AAAGRGIGKRVLSVARNADLVLIVLDVFQPHHLGVLKNELAEIG
                     IKIDQKPPNVVVEKTSTGGVSVNILAPTKLTQNFIKEILRISGIHNGRITIRETDLTE
                     EQLIDVLNGNRIYVNSLTVLNKIDLVNQGFVREIQTKIGNNFIPISADANINIDALKE
                     AIYQRLDFIRVYMRPKRGETDYQEPMIIRNGSTVADVCSKVHRNMIKDFRFAQIWGRS
                     AKFNGQKVGLDHILRDEDVLTIVKKINSM"
BASE COUNT          552 a          336 c          303 g          598 t
ORIGIN      
        1 ggttgctgat attagagatg ttactatcaa ttctcaagaa gagagagtca ttaggacgca
       61 gggcgatgct aatccttctt ctatccccgg agtagatttt cctataacag aaaaagatta
      121 tatcggcaag gtcgcttttg taatcccagg cattggagta ataacaaggg caataagccc
      181 tccagttaat tatatcatta tagctgctat cttggcaata ttattattca gtcatctaaa
      241 aagaaaaaaa gatgccgaac catccgcacc agatggaacc gaaagaggag atagttcatc
      301 cccggctact ggaagtcctc cgaattgatt taagctaaaa ttcttatcct aatattgtac
      361 tttaatatct ctctacgatc tgcctttatc aatattacac ctccaataga tgatatagtc
      421 caagtcgatg agggtctctg tgtagtaatg ctatgcatat aaacgccacc agtattttca
      481 ttaatgacga tgaaaccggt ttgcgtgagg attttgaaag atggattgaa atattctatc
      541 cccataaagg cattaataaa tacaaacata atagaacagg agaagataat gaagatgctc
      601 atttaaagcg tcagatcatg ggaagagaag ttgttattgc catcaccaaa gggaacctgg
      661 attttcctgt gagaacaagt attctatggc gaatttgatg gtcgtcggag caaaagtgtt
      721 ctagttaagg ttcttgatga atagttgcgc taatacaaat gcttactatt cattcagttc
      781 gcccatcaga gatattgtct atttcataaa aagttcttat gaaaaacttt tagtaatagc
      841 atatttgtta cataataaat tcttacatcg agcgctttat aaaagacagc cattttaagt
      901 attatcttat gctagataat aaatgataat gtcgcaatga ggttccgcta ttaaagggag
      961 cctatttaat tcttcaaaca aatgaaaaaa tctctggatg tatatgaaaa atactatatc
     1021 atttttacta caacttttat ttgatttaca tgctatttat cttctttact atggtcaata
     1081 catcctcgtc tctgagtata tggtctaatc cgaccttctg accattgaat tttgcactcc
     1141 ttccccaaat ctgtgcgaat cgaaaatctt ttatcatatt gcgatggact ttactgcaaa
     1201 catccgcgac agtgctacca tttctgatta tcattggttc ttggtagtct gtttcacctc
     1261 tctttggacg catatagacc ctgatgaaat cgagcctctg atatattgcc tccttcagtg
     1321 cgtcaatatt gatatttgca tccgcagaaa ttggaataaa attatttcca attttagttt
     1381 gaatctctct tacaaatccc tgatttacaa ggtctatctt gttcaataca gtcaaagagt
     1441 taacataaat cctattacca tttaaaacgt cgattaattg ttcttcagtt aagtctgttt
     1501 ctcttattgt tatacgaccg ttgtgaatac cagagatacg caagatttcc tttataaaat
     1561 tttgtgttaa ttttgttgga gccaaaatat ttactgatac tccacctgta gatgtctttt
     1621 caactactac gtttggaggt ttttggtcaa tcttaatccc aatttcggct agttcgttct
     1681 ttaaaactcc taaatgatgt ggttgaaaaa cgtctagaac tatcaaaaca agatctgcat
     1741 tcctagcaac ggagagtact ctcttgccta tacctcttcc tgctgctgc
//
LOCUS       DATABJ010000061         1782 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1788495, whole genome shotgun sequence.
ACCESSION   DATABJ010000061 DATABJ010000000
VERSION     DATABJ010000061.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1782)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1782)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1782
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1788495"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            166..615
                     /locus_tag="VHF44_01105"
     CDS             166..615
                     /locus_tag="VHF44_01105"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124177.1"
                     /translation="MPKPVRRQKKKQIPKLNRIVRTVSTMQRGIRTGHSSYVEMHEAN
                     NLVTRNIKLRINSMKPFIDKELYEKLISILPAMLNGYEFTLTPNGTVKNLDLDHLLSL
                     DSDITMLLLSLEYMVKQHVNHIPIDEIISSFKELIDERRRLLNDLRA"
     gene            complement(605..1531)
                     /locus_tag="VHF44_01110"
     CDS             complement(605..1531)
                     /locus_tag="VHF44_01110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006352 - DNA-templated transcription
                     initiation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HEX2124178.1"
                     /translation="MVKKLVKDISMFSDRCPRCGKGPMVTDNSSGEMFCGNCGFVVTE
                     RIEETGPEWRAFSKEEHEDRSRAGIPTSLAMHDMGLATIIGPVDKDASGKPLSASMKS
                     TIERLRTWDSRSQVHEPVDRNFRQAFSELDRLKDKLAVGDAVIEKAAYVYRKALEKGL
                     VRGRSISALVAAALYAACRDTETPRTLKDIANASNIKKKDVARCYRLLIRELDLKMPV
                     VDPVKCVARIASKAGLSEKTKRKALEILKKAEEGKISAGKDPMGLAAAALYVACVMNG
                     ENKTQKDVAEAAGVTEVTIRNRYKGLKMHLKL"
BASE COUNT          528 a          356 c          282 g          616 t
ORIGIN      
        1 ttagctagca gaatattgtt aggctcaaat cattttttaa tacacattta tatatatttt
       61 gagattcaaa tttcatttaa atattgacta agacatccaa atagaaagtc tattattcac
      121 ctttttaacg aaagcattta agagggtcat ctcaatttcc gcttaatgcc caaacccgtc
      181 agacgacaaa agaagaagca gattccaaag ctaaatagaa ttgttaggac ggtatcaaca
      241 atgcaaagag gcataagaac aggacattct agctacgtag agatgcatga agcaaataat
      301 ttagttactc gtaatataaa attaagaata aattccatga agccattcat tgataaagag
      361 ttatacgaaa aattgatttc tattttgcca gccatgttaa atgggtatga atttacattg
      421 actcctaatg ggactgttaa gaatttggat cttgatcatc tcctgtcact tgattcagac
      481 attactatgc ttcttctgtc actcgagtat atggtaaaac agcatgtcaa tcatatacca
      541 atagacgaaa taattagttc gttcaaggaa ctaatagatg aaaggagaag attactaaat
      601 gatcttagag cttaagatgc atcttaagac ctttgtatct atttctgatc gttacttctg
      661 ttacacctgc ggcctctgca acatcttttt gtgttttatt ctctccgttc attacacaag
      721 caacatacaa cgcggcagct gctagaccca ttggatcctt tccagcagaa atttttcctt
      781 cctctgcttt ctttaagatc tctaatgctt tacgttttgt cttttctgag agccctgctt
      841 tgcttgcaat tcttgcaaca cattttactg gatctactac cggcatttta agatcaagtt
      901 ctctaattag taatctataa caacgtgcta catccttttt cttaatgtta cttgcattag
      961 caatatcttt caaagttcgt ggtgtttctg tgtctcgaca tgctgcatag agggcagcag
     1021 caactaaagc agaaatagaa cgtcctctca ctagcccttt ttctagagcc ttcctgtaaa
     1081 catatgcggc tttctcaatt actgcatcgc ctactgcaag tttgtctttt aatctgtcta
     1141 attcactaaa tgcttgccga aaattccgat ctactggctc atgaacttga ctgcggctat
     1201 cccaagttct taatctttca atggtacttt tcatagaagc ggacaacggt ttgcctgaag
     1261 catctttatc taccggaccg ataatggtgg caagtcccat gtcatgcata gcgagagaag
     1321 ttggaattcc tgcgcggctt ctatcctcat gttcttcctt tgaaaatgcg cgccattcgg
     1381 gacctgtttc ttctattctt tccgttacaa caaatccaca gtttccgcaa aacatctcgc
     1441 cgctagaatt gtccgttacc atagggccct ttccgcagcg cggacatctg tcactaaaca
     1501 tagatatatc ttttaccaat tttttcacca taaaattagc ggcgttccgc caactagtat
     1561 aaatatttta ttctattata tatgtattgt ggtggtaatt tttattataa tataattata
     1621 aaatagtttg tttactgtgg aatattaaat gtctgatatt aataatatct aaatattctt
     1681 tatcaaattg aaaataatgc aatcaatttg gtgtttctaa tataattgtt attatcgccc
     1741 ttggatttct atctttcttc tgatcaatca tattctacta ta
//
LOCUS       DATABJ010000062         2632 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1134929, whole genome shotgun sequence.
ACCESSION   DATABJ010000062 DATABJ010000000
VERSION     DATABJ010000062.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2632)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2632)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2632
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1134929"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            611..1237
                     /locus_tag="VHF44_01115"
     CDS             611..1237
                     /locus_tag="VHF44_01115"
                     /inference="COORDINATES: protein motif:HMM:NF013621.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylyltransferase/cytidyltransferase family
                     protein"
                     /protein_id="HEX2124179.1"
                     /translation="MDPLDKAILASLYVSALEPQVSSFDRINYKLPIGKEVYRLKVQQ
                     LSELGFLEKNDNYKLSFFGRDALKVVLVGGVFDIIHPGHIHTLKAAKALGDVLVVVVA
                     RTSTALKIKKDRRIYHNELLRKELVSSLNLVDLAIIGKEGTLYDTVEYVKPNIIALGY
                     DQAHSEKDVADNCQKRNLNIRVTRVNTPIPETKSSKIKDEMGEFFYRI"
     gene            complement(1234..1935)
                     /locus_tag="VHF44_01120"
     CDS             complement(1234..1935)
                     /locus_tag="VHF44_01120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016773 - phosphotransferase activity,
                     alcohol group as acceptor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DUF120 domain-containing protein"
                     /protein_id="HEX2124180.1"
                     /translation="MLEIRLQHILTVIQILMLGGRHNFIEITTTDLAKAIKRSQQAAS
                     KHLLELENVGYIERLKNGKKFRVRITDKGFLQIESLSSIIKSAIESSPDTIDLEGIVI
                     SGMGEGAYYMSLDGYRKQFKDKLGYDPYPGTLNVKLVDQVYMNARRELGKFPSIFIEG
                     FSDKTRTYGWAKCYLAIINNTAIKNAAILLLERTHYDDSMLEVIAPCSIKNSIGVKNG
                     DRISIRVYINNAKKS"
     gene            complement(1941..>2632)
                     /locus_tag="VHF44_01125"
     CDS             complement(1941..>2632)
                     /locus_tag="VHF44_01125"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124181.1"
                     /translation="NAIAIEGARIDETITRLTEGKKVIAFLDGDRAGDLILKELQGLV
                     QIDKVLRAPSGREVEECTPLEIADILKEAVPFVSANVQQSQSLPQTQSDHRQTQKHER
                     QTQYDRDEQQQQVPGIDSKDSDLVHKETPEILSMVREVYPQINETLEAIILDSSLKTL
                     LKIPVSDVVKKLDSAEGAKLLVLDGIVTQRLVEAADKVGIEYIIGHRKGEIKKSTDIR
                     IRTFGDMGISN"
BASE COUNT          803 a          491 c          438 g          900 t
ORIGIN      
        1 tacaataagt tcctagaagt atttactata tgatacaata acaataatat taatttgtat
       61 ttgccgttaa ctatctcgga caggaaggca taattctgtc tgagcatcca attcttttaa
      121 ttcaaaaatg actgcagtca ctttgcagtt actgcagtaa ctgcagtttg ctcgtataca
      181 aaactttata gtaaatacgc aaatggtcct cctcaactat tcctaaaatg atttatggta
      241 ttatagtcta ttttataaaa gaaccgagat attattcaaa taagacaata agaaaaattt
      301 accaagaatg tcgtgtgtgt aacctttact ttttatccac caagtcataa catcgacgga
      361 gttaatttta tgattaaaag aggataaaga gagaaaagtt ctgttcactt aacatcatat
      421 ctatagctga aaatatcatt acttctcttc tatgcactta agaaatagac atcttctcca
      481 aggtcatatt ctaaatcttt atctatatat aactgattaa aaatcctcac tttcgaacga
      541 ttcccgatga cctattgctt tactactaac gcattgttta ttttgcctga agatgtcttc
      601 acaataaatt atggacccat tggataaagc aattcttgct tcattatatg taagcgcttt
      661 ggagcctcag gtatcatcat ttgatagaat caattacaag ttaccgatag gaaaggaagt
      721 ctacaggtta aaagttcaac aactttcaga gcttggtttt ttagaaaaaa acgataacta
      781 taaactcagt ttctttggaa gggatgcttt gaaagttgtt ttagttggtg gtgtatttga
      841 tataattcat ccaggtcata ttcatacact gaaggcagcc aaagcactag gcgacgttct
      901 tgtagtggtg gttgcaagaa cttccactgc attgaagata aaaaaagatc gaagaatata
      961 tcataatgaa ctattacgta aggagcttgt atcatctttg aatctggtcg atcttgctat
     1021 cataggaaaa gagggaacac tttatgacac agtggaatat gtcaagccca atattattgc
     1081 gttaggttac gatcaagccc acagcgaaaa agatgtcgca gacaattgtc aaaagaggaa
     1141 tctcaacatt agagttacaa gagtaaacac gccgattcct gaaacaaaaa gttcaaaaat
     1201 caaggatgaa atgggtgagt ttttttatag aatttaagat tttttagcat tatttatgta
     1261 tactctaatg ctaattcggt cgccattttt aactccaata gaattcttaa tagaacatgg
     1321 tgcaatgacc tctaacatgc tatcatcata atgtgttctc tccaacagaa gtattgctgc
     1381 attctttatt gcagtattat taataatggc caaatagcat ttagcccatc catacgtacg
     1441 agttttgtcg ctaaaacctt cgatgaaaat ggaaggaaat ttccctaatt ctcgtcttgc
     1501 attcatatat acttggtcta caagtttcac atttaatgtg ccaggatacg gatcataccc
     1561 aagcttatct ttgaattgtt tacggtatcc atccaaggac atatagtatg caccctcgcc
     1621 cattccagaa ataactattc cttctaaatc aattgtatca gggctagatt caatcgcaga
     1681 ctttattata gatgataaac tttcgatctg gagaaagcct ttgtctgtga ttctaactcg
     1741 aaattttttg ccatttttaa gacgttcaat atagcccaca ttttctagtt ccaaaaggtg
     1801 tttggaagct gcttgttgtg atctctttat tgctttagct agatcagtcg tagtgatctc
     1861 gataaaatta tgacgtcctc ctagcattaa aatctgtatt acagtgagta tatgctgtag
     1921 ccttatctct agcatcgtat ttagttagaa attcccatat ctccaaaagt tcgaatcctt
     1981 atgtcagtcg actttttaat ctcgcctttt ctatggccga ttatatattc aattccaact
     2041 ttatctgctg cttcaactaa tctctgtgta acgataccat caaggaccaa caatttagct
     2101 ccttctgcgc tatcaagttt cttgactacg tccgaaacgg gtattttaag gagtgtcttc
     2161 aatgaactat ccaatatgat tgcctctaga gtttcattaa tctgaggata aacctctctt
     2221 accatcgaaa gaatctctgg agtctcttta tgtacaagat cgctatcctt actatctatg
     2281 cctggtactt gttgttgttg ttcgtctctg tcatattgtg tttgcctctc atgtttctgt
     2341 gtttgtctat gatctgattg tgtttgcgga agtgattgtg actgttgaac attagcagat
     2401 acaaaaggta cagcttcttt taaaatgtct gcgatttcaa gaggagtaca ttcttcaact
     2461 tctctgccag aaggagctct taagacttta tctatctgta cgagtccctg taactctttt
     2521 agtattaaat cgccagctct gtcgccatct agaaatgcaa taactttttt accttccgta
     2581 agtctggtaa ttgtctcatc gattcttgcg ccttcaatag ctattgcatt gt
//
LOCUS       DATABJ010000063         1659 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_918630, whole genome shotgun sequence.
ACCESSION   DATABJ010000063 DATABJ010000000
VERSION     DATABJ010000063.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1659)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1659)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1659
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_918630"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            141..416
                     /locus_tag="VHF44_01130"
     CDS             141..416
                     /locus_tag="VHF44_01130"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEX2124182.1"
                     /translation="MTEPLRVLQSLPGYLSIIGKIKITLKVTKNLKTLTARLRELEQR
                     GLISRKAYPEVPPRVEHCSTQKGRSLKLVLEGLATFSIQNCHDRIFH"
     gene            complement(708..1388)
                     /locus_tag="VHF44_01135"
     CDS             complement(708..1388)
                     /locus_tag="VHF44_01135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124183.1"
                     /translation="MSALSFLWIVGASAAISAGFTAVIMVILRNSLVAQIANATTFVP
                     FSIAGIAIGKIGLVIGYYHPEIKGSKKIKRILTKVKRIGAEVNCDDDLRKHYFLGRIT
                     KNISIITNHLVILDNHLWKFIDNSVPESWQTVRYIAERSRKKIVQLEHEVVSDFVQII
                     DLVHNPSLADRRRANSLYYSLYLCQVIIHMNPGCNEHLLRDLRNVLRAQIVLLDETLV
                     LLEKEREN"
BASE COUNT          506 a          328 c          291 g          534 t
ORIGIN      
        1 catcaagtcg ctcatgcgga attataatag agagttcttt catagatcgc tacaactatt
       61 ccctctaaat aaggcttacc tatcgtattc tcttttcacc taattgaaac atactcaagc
      121 actttattat gatgcttaac atgaccgaac cgctcagagt tttgcagtcc ttgccgggct
      181 acttatcaat tatagggaaa atcaaaatca cattaaaagt gacgaaaaat ttgaaaactc
      241 taactgccag attacgagag cttgagcaaa gggggttgat ctcgaggaag gcttatccag
      301 aagttccacc acgcgtagag cattgttcta cgcaaaaagg caggtcatta aagctagtcc
      361 ttgaaggtct tgcaacgttc tctatacaaa attgccatga tagaatattt cactaaggta
      421 ttatccatga tagatctagt gatgataatg acggagtaga tcaccagaaa aattgaaaat
      481 ggtccttcta gatctgttac cttttgattt atgattttat cgatatacca tcaagaaagc
      541 tagagcaaca ccactttgca tcataataat aatagtaaag tacgaggaac gagtctatat
      601 ccaacaacca ttttaatgga attgatttat gaagtaggga aagagtagag cagctatcgg
      661 ctagtactga cttaaagcgt taaagacgtt cactggcctg tgaattgtca gttttctctc
      721 tctttttcaa ggagaactag agtctcatct agtagtacaa tctgagctct aaggacattt
      781 ctcaaatctc ttaggagatg ttcgttacat cccggattca tgtgaattat tacttggcac
      841 aagtataggc tgtaataaag actgttagcc cttcttctat cagctaaact tggattgtga
      901 actaaatcaa tgatttggac gaaatccgaa actacttcat gttccagttg tactattttt
      961 tttcttgatc tctcggcaat atatcttaca gtctgccagc tctcaggaac ggaattatca
     1021 ataaatttcc acaaatgatt atctaatatt acaagatgat tggtaattat agaaatattt
     1081 ttagtaatac gacctaagaa gtaatgcttt cttaggtcat catcacagtt gacttcagcg
     1141 cctatcctct tgaccttagt aaggatcctc tttatttttt tgctgccttt aatttcggga
     1201 tgataataac ctataaccaa gccaattttt cctattgcaa tcccggctat gctgaagggg
     1261 acaaaggtgg ttgcatttgc gatttgcgct accaaactgt ttctcagaat aaccattatg
     1321 actgcagtaa aaccagcgga tatagctgca ctagcaccca cgatccagag aaaagatagc
     1381 gcactcatat acatcataat attgcgacct atgtaggata ttaaattccc taccacccca
     1441 agtcacatat gtggtatcga cctttcagcc tgagctcagc agttgtgttc taacggtagg
     1501 agaatctctt ttaacttctc accatatgta agataatcct cagtatttca cttccgtatc
     1561 ttacttttaa atcggttcta tttccttgga tttatcttct tttgtattgc tatgggtttc
     1621 aaatgatatt tagtttctca gcatttgtta atatgcagt
//
LOCUS       DATABJ010000064         1675 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1348979, whole genome shotgun sequence.
ACCESSION   DATABJ010000064 DATABJ010000000
VERSION     DATABJ010000064.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1675)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1675)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1675
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1348979"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(249..1295)
                     /locus_tag="VHF44_01140"
     CDS             complement(249..1295)
                     /locus_tag="VHF44_01140"
                     /inference="COORDINATES: protein motif:HMM:NF013324.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005743 - mitochondrial inner membrane
                     [Evidence IEA];
                     GO_component: GO:0035632 - mitochondrial prohibitin
                     complex [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prohibitin family protein"
                     /protein_id="HEX2124184.1"
                     /translation="MPIHTILIVRNPFRHSGSPYERRRTTPEGEPLESIERGRGLSNP
                     FVRIVIPAIIGIIILLFVVSASVKIVDAGHRGVLLRFGAVDTGLALDEGIHFVTPFRD
                     SVVQMEVRTQKTVENAASASKDLQDVTTQVALNYRINPDNAQVVYQQLGFDYGNRVIA
                     PAIQESVKQVTARFNAEELITKRETVKNQIEEQIKARLAPYNILVDTISITEFQFSEQ
                     FRRAVEAKVEAQQRALQAQNDLRRIEIEAQQNEAKAVGEQKANIARAEGVRQSNVLQA
                     EGESQAINIIDEQLRSSPTYLEWLKTQRWDGKLPLVTGGGGGGTGGTTPFIQIPTGET
                     AASNTNGTTGGRSQ"
BASE COUNT          490 a          334 c          256 g          595 t
ORIGIN      
        1 caactactcc ccgaatgccg cagagtccga ttttaccttc aggtatttca cataatctag
       61 cacatgcagt acattttatc ctaccatttg aaagtttatg atacagctca gcttctttac
      121 ctagcatttc gtttcgttgc aatctatatt taaattagca atacaatctt ataaaaatat
      181 tatagaaacg gttaagacag gataagttag atattagata aagtgacctt cacttagaag
      241 aatttggatt attgacttct cccccctgtt gtaccattag tgtttgatgc tgcagtctca
      301 ccagttggaa tctgtataaa tggagtagta cctcctgtgc ctccaccacc tccacctgtt
      361 actagaggca atttaccatc ccatctctga gtctttaacc attctaaata agttgggcta
      421 gatcgtagtt gttcgtcaat aatattaatt gcctgtgatt ctccttcagc ctgtaaaaca
      481 ttagactgtc ttacaccttc cgctctagct atgttagctt tttgttctcc taccgctttt
      541 gcttcatttt gttgtgcctc tatttctatc cttcttaagt cattttgtgc ttgtaatgct
      601 ctctgctgag cttcaacttt tgcttcaact gctcttcgaa attgctctga gaattggaac
      661 tctgttatag atattgtatc aaccaagata ttataaggag ctaatcttgc tttgatctgt
      721 tcttctattt ggttctttac ggtttctctc tttgtaatga gttcttctgc gttgaatcta
      781 gcagttactt gtttaacaga ttcctgaatt gctggagcaa ttactctatt accataatca
      841 aaacctaatt gctgataaac aacttgtgca ttatcaggat ttatacgata gtttagtgca
      901 acttgtgtag tcacatcctg caaatctttt gatgctgaag cagcattttc aactgtcttt
      961 tgggttctca cttccatctg aactacacta tcacgaaatg gtgtcacaaa gtgtattcct
     1021 tcatctaatg cgagacccgt gtctacagca ccaaatctta ataaaacacc tctatgacct
     1081 gcatcaacta tctttacact ggcactaact acaaacaata gtattataat gcctattata
     1141 gcaggaatta ctattctaac aaatggattt gacaatcctc gtccccgctc aatactttca
     1201 agcggctctc cttcaggagt agttcttctt cgctcgtaag gtgatcccga gtgtcgaaat
     1261 ggatttctca caattaatat tgtatgaata ggcatttaaa ttttttattc ttaaaattat
     1321 aattccaata ttaattataa ttctaataca attagataat agatatatgg ttgatgaaca
     1381 tctgtatata agttattttc gctttttact agagagagaa aaggatctta cgatacaact
     1441 ccgactgata atacatgaag taacagtcgc aattatatga gatagatatt tgatcacaaa
     1501 catatatagt aattatccaa ccattgggtc tgccaaaaag tgttgtaatg tgacgatata
     1561 aaggttcaat gataaaaatt ttcgatccaa atgcaacaag caaattcata ttgtttttca
     1621 ttgctccgtg catatttatt gtgggtcatg atataattca tacatacaca aaata
//
LOCUS       DATABJ010000065         3022 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1791389, whole genome shotgun sequence.
ACCESSION   DATABJ010000065 DATABJ010000000
VERSION     DATABJ010000065.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3022
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1791389"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            91..306
                     /locus_tag="VHF44_01145"
     CDS             91..306
                     /locus_tag="VHF44_01145"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124185.1"
                     /translation="MNEPPSPLPTHPTTLTLRSLQEILHNRIIQKKGEIHESHNRAFN
                     ERIWTEIETLQWVLAQILTLMRRSQTT"
     gene            320..1042
                     /locus_tag="VHF44_01150"
     CDS             320..1042
                     /locus_tag="VHF44_01150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124186.1"
                     /translation="MTPAKSKENERKSKEFEEEIEINEYEDRIDKLSLQFMVASENGL
                     FSQEKVSNVVADEILQCLLNARSELIDNHFVACERNLIEAERYYHAAIYDASCWWRFI
                     NAYAFHLWIYFIGMLFSIVSFYFLTSELPSEQLGFELLAMQAVIWGMIGGLFQDIWYL
                     WRHVQNRDYRNTWMIQYFSAPFIGGILGAIVYVTIIAGLIILDTDTEGKPRDFVVMAL
                     AAFAGYNWNWAIKRFKSIGHKF"
     gene            1384..1788
                     /locus_tag="VHF44_01155"
     CDS             1384..1788
                     /locus_tag="VHF44_01155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124187.1"
                     /translation="MEDFNSKDEVKEIKISRRQFLKILLSTGIVFIFGSLLFPLSYTR
                     RRREDTGPEPKPAPETPSIGPVIPKIYGVLPTDSRFIAVLGWRFKPEDTIVMDGICCR
                     TVFRDANYLTYEVPSETTGGLKVIKVKQRHLF"
     gene            2050..2868
                     /locus_tag="VHF44_01160"
     CDS             2050..2868
                     /locus_tag="VHF44_01160"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124188.1"
                     /translation="MTILTRQERERLVIELYYNQGKTYREISKEARISPRDIGVILNR
                     VVEEKKTKGLKEEEQDNTDSEKNHNQEQQPDLPLSSQAYKLFSAGKTPLEVAIELNLR
                     ESEATKFYKEYWKLKQLHNLNMVYEETKGDVEPFLKLYRLSKANGISASHLNNLLAIV
                     NNNLPAIEERYKRIRNDVSMLQIRKQSLERNLYQLNNQIATTTNILNSFRMSCSRERR
                     EIENLQNEKVRLDTFVTGFKSSNEEYFKIKETAEEKVKDVLNDRKILLRSLLPP"
BASE COUNT         1139 a          478 c          539 g          866 t
ORIGIN      
        1 gcgttgattt gtccctctct ccctcacgct cgctttggtg cttcaattct tattttgaat
       61 ggtaagtaac ggtatattac cgaactctat atgaatgaac caccatcacc attaccaaca
      121 catccaacaa cactaacatt aagatcacta caagaaatac tgcataatag aataatacag
      181 aagaaaggag aaattcatga gtctcataat agggctttta atgaaagaat atggacagag
      241 atagaaacat tgcaatgggt cttggctcaa atacttacgc tgatgagacg ctcacaaacc
      301 acataaagag tctgtttctt tgaccccagc aaaatcaaaa gaaaatgaaa ggaaaagtaa
      361 ggaatttgag gaagaaatag aaattaatga atacgaagat agaatcgata aattatcatt
      421 acaattcatg gtagcatcag agaatgggtt gttttcacag gagaaagtat caaatgtagt
      481 tgcagatgaa atactccaat gtttattaaa tgctagatct gaattaatag ataatcactt
      541 tgtagcatgt gaacgcaact taattgaagc agaaagatat tatcatgccg ctatatatga
      601 tgcatcatgc tggtggagat ttattaatgc atatgctttt cacttgtgga tttattttat
      661 aggtatgcta ttttcaatag tctcttttta ttttctcact tcggaactac cgtcagaaca
      721 gcttggtttt gaacttttgg ctatgcaagc agttatctgg ggaatgatag gtggtctttt
      781 ccaggacata tggtatctgt ggagacatgt tcaaaacaga gattatagaa atacatggat
      841 gatacaatac tttagtgctc catttattgg cggaatactt ggagccattg tttatgtaac
      901 tataatagca ggacttatca ttttggatac cgatacagaa ggaaagcctc gtgattttgt
      961 agtaatggcg cttgcggctt ttgctggata caattggaat tgggctataa agaggttcaa
     1021 aagtattgga cataaatttt aaataataaa taataatatg ttgcagtatg ttgacttgac
     1081 tatcatacta acttacgtct taattatgtc aaattcgttg acataacagt ataagagaga
     1141 aaataggaag aagaagttag cgccaaaaac ataaacaaca agagatatcc gctcaagcct
     1201 atcagctatt ttctgaagat aagacacctg tagaactagc tatcacatta aacattagac
     1261 aatcagagca actaaaaact atagagagta ttggaaatta cagacactgc ataaacttga
     1321 ttctttatac ataaatacaa atagaaaaat atacttttat aagacttggc ttaatggtct
     1381 gcattggaag actttaattc taaagatgaa gtaaaagaaa taaagatctc acgtcgccaa
     1441 tttttaaaga ttttattaag cactggtatt gtatttatat ttggaagttt attatttcca
     1501 ttatcttata ctagaagaag aagagaagac acaggaccag agcctaagcc agcaccagaa
     1561 acgcctagta taggtccggt tattccaaaa atatatggtg ttcttcctac agacagtagg
     1621 tttatcgcgg ttttaggttg gcgatttaaa cctgaagata ccatagtaat ggatggaata
     1681 tgttgtagaa cagtattcag agatgcgaat tatcttactt acgaagtacc ctcagaaaca
     1741 actggtgggc taaaagttat caaagtcaag caaaggcatc ttttctaatg attttaattt
     1801 gacactttga cgctgtcaca cattctcaca tatcaaccag taagttaaag agctaatttc
     1861 aaaagaaatt caacatgcat atttagtaca tatatgacag catttttaga tactctaaat
     1921 tcaatatact gtgaagtggt aacagatgaa aacagatgat agcagaggta acaaaactga
     1981 taataaatga taacaagaga taacagcttt aagcttccat tatcccatat ttcttgaaga
     2041 tacaaaacaa tgacgatctt aacaagacaa gaaagagaaa gacttgtaat agagctttac
     2101 tacaatcagg gcaagactta tcgtgaaata tctaaagagg caagaatatc tccacgtgat
     2161 ataggagtta ttttgaatag ggtagttgaa gagaagaaga caaaaggatt gaaagaagaa
     2221 gaacaagata atactgattc tgagaagaac cacaatcagg aacaacaacc agatctccct
     2281 ctatcctccc aagcatacaa actcttttcc gcaggtaaga ctccattaga agtagctatt
     2341 gaattaaacc ttagagagtc agaggcaact aaattctaca aagagtattg gaagctaaag
     2401 cagttacaca atctgaatat ggtttatgaa gaaactaaag gcgatgtaga accatttcta
     2461 aagttgtata gattatctaa agccaacggt atcagtgctt ctcatctcaa caaccttctt
     2521 gcaattgtga acaataattt accagcaatt gaagagcgat ataaaaggat aagaaatgat
     2581 gtaagtatgc tgcaaattcg aaagcaatca ctagagagaa atctatacca attgaacaat
     2641 caaattgcta caacaactaa tatcttgaat tcttttcgta tgtcttgcag tagagaaaga
     2701 agagagatag aaaatctaca gaatgaaaag gtaagactcg acacattcgt aacaggattt
     2761 aagagcagta atgaagagta ttttaaaata aaagaaacag ctgaagagaa agtaaaagat
     2821 gttttaaatg atcgtaaaat attattacga tcactattgc ctccgtaatt gaatcattaa
     2881 gaagaaacac tgaattatat aatttcctaa tatatgataa ttcaaataat actactacca
     2941 gctatggatc taactatcct tccttaatgt tgtcagaaag tcagcagcaa caacaacaat
     3001 catttactga tacctatact gc
//
LOCUS       DATABJ010000066         2098 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_268215, whole genome shotgun sequence.
ACCESSION   DATABJ010000066 DATABJ010000000
VERSION     DATABJ010000066.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2098)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2098)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2098
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_268215"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(244..1224)
                     /locus_tag="VHF44_01165"
     CDS             complement(244..1224)
                     /locus_tag="VHF44_01165"
                     /EC_number="3.4.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF013827.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004252 - serine-type endopeptidase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEX2124189.1"
                     /translation="MFPIHDDTERIHGRPYVNYSLIAINVIVFVWEIIVTGYFSDEQA
                     VAEIFSKYGAVPRSVLNGDLISILTSMFMHGGIAHIIGNMVFLFVFGDNIEDRFGHIK
                     YLLIYIAWGAAAAIIHSIFAVSTGGGMIPAVGASGAISGVMGAYLIMFPRAKIFTVII
                     AFFITTIRIPALAYIPFWFILQVIFGLIDPFGGIAYLAHIGGFVAGLGTGYTWKLFLS
                     GQNIINPLFKTDSQITRKQRPKIEESIPQASPEVIEGPDFYEIIAEIHGVSDATDINA
                     SFEPDTGNVRIIARGSRNYNMLAKLPTTAVKPTVEYIHYLNGIARIRLTK"
     gene            complement(1288..1452)
                     /locus_tag="VHF44_01170"
     CDS             complement(1288..1452)
                     /locus_tag="VHF44_01170"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="C2H2-type zinc finger protein"
                     /protein_id="HEX2124190.1"
                     /translation="MDLFRRKNKEDQKGFKCEYCNLKFDDKDRMKRHVRKAHSEKGGD
                     MPSSNPFGGF"
     gene            complement(1650..1880)
                     /locus_tag="VHF44_01175"
     CDS             complement(1650..1880)
                     /locus_tag="VHF44_01175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HEX2124191.1"
                     /translation="MPKAFVLMNAELGSEDSIVNELKKIEGVKEVYQVYGVYDIVAQV
                     EADIMEKVKETITWKLRKLNGVKSTLTMIVME"
BASE COUNT          659 a          400 c          319 g          720 t
ORIGIN      
        1 cggaacctgg aggggcttgc tgcgtcatac agattaaatt gttcaaaaaa tatcttataa
       61 acttttgtct cctacatctt tgaggcgtta atcaatgtat aaactcgtaa tcacttctcc
      121 tgcattttta tgagatctgt gaccatcttg atatattcta atgaatttta tctccgccag
      181 agtgtatatg tctgttcaaa gaatatgtta attctagttg ctgatgaaat atgataggtg
      241 attttacttt gttagacgga ttcttgcaat cccattgaga taatggatat attcaacagt
      301 tggtttgact gcagtagttg gcagttttgc taacatgtta tagttccttg atcctcttgc
      361 aattattcta acatttcctg tatcaggctc aaagctagca ttaatgtctg ttgcatcaga
      421 aactccatga atttcagcta taatctcata aaaatctggc ccctcgatga cttcaggaga
      481 agcttgagga atagactctt ctatttttgg tctttgtttt ctagttattt gactatcggt
      541 tttaaagagc gggtttatta tattctgtcc tgacaaaaat agtttccatg tatatcccgt
      601 tcctagacct gcaacgaatc cacctatgtg agcaagataa gcaatcccac caaaaggatc
      661 tatcagaccg aagatcactt gtaaaatgaa ccaaaatggg atataggcta gtgcaggtat
      721 ccggattgta gttataaaga aggcgattat aacggtaaaa attttagctc ttggaaacat
      781 gataaggtat gcacccataa ctcccgaaat agcaccagat gcccctacag caggtatcat
      841 ccctcctcct gtgctaactg caaagatgct gtgaataatt gcagcagccg ctccccacgc
      901 tatatagatc agtagatatt ttatatgacc aaatctatct tcaatattat ccccaaagac
      961 aaacaaaaac accatgttac ctattatatg agctattcca ccatgcataa acattgacgt
     1021 taaaatcgat attagatcgc cgttgagaac agaccttggt acagcaccat atttactaaa
     1081 tatctctgca actgcttgct catctgagaa ataccctgtt actattatct cccatacaaa
     1141 cactatgaca ttaattgcga tcagactata atttacatat ggccttccat gaattctttc
     1201 agtgtcatcg tgaatgggaa acatattatt ttatttctaa gttgttagac agatctataa
     1261 ggaaataagc gtttgcgttt atctcttcta aaacccaccg aatggatttg aagatggcat
     1321 atctccacct ttttcactat gtgcttttct tacatgtctt ttcattctat ctttgtcatc
     1381 aaatttcaaa ttacaatatt cacatttgaa gcctttttga tcttccttat tttttcttct
     1441 aaacaagtcc atattaaagc ataatgcatt aaggagttaa tatctattaa tatatattgt
     1501 cgataatata aagaaacttc tcatttagga tattttaaaa tctagtagaa tgttttttta
     1561 ctaaaagttt aatggttcat tgcttatatt tgatgacaca tggctacaga agaagaagaa
     1621 gaagaagaca gagatttcat caacacttat tattccataa ctatcattgt gagagttgac
     1681 ttgacgccat tgagctttct tagcttccac gtaatcgttt ccttgacctt ttccataata
     1741 tctgcttcaa cttgagctac tatatcatat actccataga cctgatagac ctcttttaca
     1801 ccttcaattt tctttagttc attaacaata gaatcttcac tccccagctc agcattcatt
     1861 aatacaaagg cttttggcat gatagcttat tccaagttga atataaaaac ataatgaaaa
     1921 attatgaaat ttttatttta tagttcaata ctagaataaa tatagcaaac taaacctcat
     1981 aggttatctt accatcaata tcaaagctta ttctgtgttc aggcgctttc aaagcataat
     2041 attagtgata aatgtgactc acaaatagta ggatcctatt gcaattttgt atggtatc
//
LOCUS       DATABJ010000067         4105 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_44426, whole genome shotgun sequence.
ACCESSION   DATABJ010000067 DATABJ010000000
VERSION     DATABJ010000067.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4105
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_44426"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            771..1031
                     /locus_tag="VHF44_01180"
     CDS             771..1031
                     /locus_tag="VHF44_01180"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124192.1"
                     /translation="MLLNKTEHILQNNKCDKCRLTIHPDFIGYHKCGYANCPICKNAI
                     TNSQYWFHIRSHPGHENDSPPRPRETTFNSRQGTEMRHSTQR"
     gene            1483..1779
                     /locus_tag="VHF44_01185"
     CDS             1483..1779
                     /locus_tag="VHF44_01185"
                     /inference="COORDINATES: protein motif:HMM:NF013422.4"
                     /note="in yeast this protein is involved in start site
                     selection during the initiation of translation; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stress response translation initiation inhibitor
                     YciH"
                     /protein_id="HEX2124193.1"
                     /translation="MSEDYDTNSMDNVLRELDREKTNIVISKEIRRYKKSTTVVRGLQ
                     DRTDTESITRELKTKIGTGGTYKEGQIVLQGDHRESVKNLLISKGFSEKSIEIM"
     gene            complement(2308..4074)
                     /gene="glmS"
                     /locus_tag="VHF44_01190"
     CDS             complement(2308..4074)
                     /gene="glmS"
                     /locus_tag="VHF44_01190"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004360 - glutamine-fructose-6-phosphate
                     transaminase (isomerizing) activity [Evidence IEA];
                     GO_process: GO:0006040 - amino sugar metabolic process
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEX2124194.1"
                     /translation="MCSIIGYTGRLYAAPILVQSLKRMEYRGYDSVGIATINDGKILI
                     RKGIGKVAEVNKSLDLGHLPGQIGIGHTRWATHGGVTDKNAHPHSGCTDDIAVVHNGI
                     IENYSELKAELIGLGHKFKSQTDSEVIAHLLELHYSSHRDIRQAMIETCKKLSGTYAF
                     VAVFEDGTVSGARYDEPLIIGIVDSGCFISSDVLGFIEYTDKAIFLDNRDIVVSNRDR
                     LDLFDFDGNSVTRPITQVAWELGAAEKGKYTHHTLKEIHEQIQTIIEAGNQNNEKLDS
                     FCDLLSNAKSIYITGSGTSYHSALIAKHLFSRFAKIRCETIMSSEFQYMLDAVDDKSV
                     LIAISQSGETADVLQAVKIAKQTGSKILSIVNIPTSSVARISDSFLSVNCGPEIGVAA
                     TKSFTGQLSVLYSIVDTLCNGCIEISGDKSEIIKAIELVLHDEIKIAKIADTMEDVKD
                     IYILGRSLHYPISLEGALKIKELAYIHAEGIPAGEIKHGPLALIEKNTIVIVINPSDA
                     TYNSTISSAYEIKARGATVIGISDKMNEVYDHFIEISKVRDPLFPLVEVIPLQMLAYY
                     LALKKKADPDYPRNLAKSVTVR"
BASE COUNT         1303 a          740 c          656 g         1406 t
ORIGIN      
        1 actcttttgc tatttgatgt ttgattttac cttaattata aagctgtaaa acaagtcttt
       61 ttctttcttg tcttgttatt acttagattt ttttactaat ccgtctatta tataaaacaa
      121 aatcttaaag ctgtcgttac cacttgttgc ctattttgtt gccttgttat cacctgcttc
      181 caagtgttac caatatgtgg tatttgaatt ttatatatat cactttattc gcgtatataa
      241 tttaaattac tgtatatata cggctaagta tatttttgga tttaattagc cggtaccaaa
      301 agttagtgtg ttactatcta catattgcta ttgaatcgta aaatatcata ctataatgaa
      361 cgtccatatt ggcatgaatc tgagactcca ttcatagtat gtaacttatg tctatcaatt
      421 tgtcagtata taaacatcaa ttcttgcgtc cgagagcaaa tgcgtcaagc gtcatttatt
      481 gtagcagtta atttgaaatc atcgctatta ttttcttcgg caatatagag accggaagac
      541 ttcaagtaat atattttaac ataagcaggg gcattttatt tttttactcc tcctcatttt
      601 ttattgaacg tccttgatat tatcatagat gtttagggca taaattggta aggctagcca
      661 aacattctct accttacaga gaaaacaaag gaacaatata accctggact agtactatga
      721 acaaatactc acctagaaga cttgagctag ccaatacatc cttattatac ttgctgttaa
      781 acaaaactga acatattttg caaaataata aatgtgataa atgcagatta acaattcatc
      841 ccgactttat aggatatcat aagtgtggat atgcaaactg tccaatctgt aaaaatgcaa
      901 tcacaaattc acaatactgg ttccacatca gatcacatcc aggacatgaa aatgatagcc
      961 cacctcgacc gagagagaca acttttaatt caagacaagg tacagaaatg cgacactcga
     1021 ctcaacgttg atcataattt tctatttatt ctatatcata aagatacgta aaaacgatga
     1081 ccgatattat atatatatac aaaaaagcag atgatctaac acctgcatta ctaatcgcca
     1141 tttcagttat cttttcaaga aagcttatca aaagtttatc gaaagctatt tggaataagg
     1201 ctagatttaa ctcgagggat cgtcatatta gctagcggat cttgaaagta acccaactaa
     1261 gagtttatct atgatgagaa tatttgatgt agcctcttgc gagttctttt aagtattgaa
     1321 cgtcacttag tctaatatgg cttatctgca agattttggc tatgtctgag ttattatagc
     1381 tctgcacttg ccttcagtaa aactatatgt catactgtat ttggattatt tcataatttg
     1441 ttagactaat cctttttaag gcaaaaaatc ataggattat cagtgtcaga agattatgat
     1501 acaaactcaa tggacaacgt tctgcgagaa ctagatagag agaaaactaa catagtcatt
     1561 tctaaagaaa ttagaaggta caagaaatca actacagtag tgcgtggttt gcaagataga
     1621 acagatacag agtcaataac aagggagcta aagacgaaga taggaacagg aggaacatat
     1681 aaggaaggac aaattgtttt gcaaggtgat catagagagt cagttaagaa tctgcttata
     1741 tccaaaggat ttagtgagaa atcgatcgag ataatgtaac aaaatattat gcaatcgatt
     1801 agtcggttca aattgtataa gttataatat tttatatatt gttaatactt taccaagaga
     1861 ggattacgtg attagaatat taaaaagtaa ttacgtctct acatatacca tagtcccatc
     1921 aaacagctag atatcttgat gattctatgt gtttcccttt ctagcttagt ttaaaacttt
     1981 tacgtagttg attcttgacc aagttaatca acaatatata agctttgttt gatttcactt
     2041 tggtcttaat tgtgccacta gtttacaact gtactcaact agtataagag gatatagtgc
     2101 aaattgcaga cgtcagtatt actaatatta tcttaatgct tactggtagt cttatataat
     2161 gtggattaga taatcatatt ttaattagaa tttttctgtc tttagaccgt catagttcat
     2221 attattcata ttattctttt ttaaatttaa atttaaaaaa gatatagatg tgttatagtt
     2281 ttaaatagaa atttgaaatt agaatttcta tcttacagtg acagattttg ctaaattacg
     2341 cgggtaatca ggatccgcct ttttctttaa cgcaaggtaa taggctaaca tctgtaatgg
     2401 aatgacctct accagaggaa agagagggtc tctgactttc gatatctcaa tgaagtggtc
     2461 gtatacttcg ttcattttat cagagatgcc gatgactgtc gctccccttg cttttatttc
     2521 ataagcactg gagatagtac tgttatatgt agcatctgaa ggattaatta ctattacaat
     2581 agtatttttt tctattagtg caagtgggcc gtgttttatt tcgccagcag gtataccctc
     2641 tgcatgaatg tatgccagtt ccttaatttt taatgctcct tcaagagata taggataatg
     2701 taatgatctg cctagaatgt aaatatcctt tacatcttcc atagtatctg ctatttttgc
     2761 aatttttatt tcatcatgaa gcacgagctc tatggccttg atgatttctg atttgtctcc
     2821 ggaaatctca atgcaaccat tacacaatgt gtctacaatg ctgtagagaa ctgaaagctg
     2881 cccagtaaaa ctttttgttg ctgctacacc aatctcagga ccacagttta cgctgagaaa
     2941 agaatcactg attctggcta cggatgaggt aggaatattt acaattgaga gtatttttga
     3001 tcccgtctgc ttggctatct taaccgcttg caaaacgtcg gctgtctcac cactctgaga
     3061 aattgcaatt agcaccgatt tgtcatcgac agcatcaagc atatattgaa actcacttga
     3121 cattattgtc tcacaacgaa ttttagcaaa tctggaaaac aaatgcttcg caattaatgc
     3181 cgagtggtaa ctcgtcccac taccagtaat gtatatgctt tttgcatttg ataaaagatc
     3241 acaaaaacta tctaattttt cattattttg gtttccagct tctattattg tctgtatttg
     3301 ttcatgaatc tctttcaatg tatgatgtgt gtatttgcct ttctctgctg ctcctaattc
     3361 ccaagccacc tgtgtaatag ggcgtgtaac agagttgcca tcaaaatcga ataaatccaa
     3421 tctgtctctg ttactaacca caatgtctct gttgtcaaga aaaatagctt tatctgtata
     3481 ttctataaat ccaagaacat cacttgaaat aaaacatcca gagtctacta ttccgattat
     3541 aagcggttca tcatatctag cgccgctaac ggtgccatct tcaaaaacag caacaaatgc
     3601 ataggtaccg cttaattttt tacacgtttc tatcatcgct tgccttatat ctctatgtga
     3661 tgaataatgg agttcaagta aatgagcaat aacctcacta tctgtctggc tcttaaactt
     3721 gtgtccaaga ccaatcaatt ctgcttttaa ttcgctgtaa ttctcgataa ttccattatg
     3781 aacaactgct atatcatccg tacatccaga atgtggatgc gcatttttat cggtaacccc
     3841 tccatgggtt gcccacctgg tatgacctat acctatttgt ccaggcaaat gtcccagatc
     3901 taacgatttg tttacttcag ccaccttgcc tattcccttt cgtataagta ttttgccatc
     3961 atttatagta gcaataccaa cgctatcata tcctctatat tccatccttt ttaagctctg
     4021 aaccaagatg ggagctgcat ataatcttcc tgtataacca ataatagaac acataactac
     4081 tttagttcat tatgagtctt aaaac
//
LOCUS       DATABJ010000068         2501 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1351464, whole genome shotgun sequence.
ACCESSION   DATABJ010000068 DATABJ010000000
VERSION     DATABJ010000068.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2501)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2501)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2501
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1351464"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(668..1090)
                     /locus_tag="VHF44_01195"
     CDS             complement(668..1090)
                     /locus_tag="VHF44_01195"
                     /inference="COORDINATES: protein motif:HMM:TIGR00149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HEX2124195.1"
                     /translation="MPVSTKIVTVISKGENEMIDITRQTAEAIGSSKLQDGVVVIFVS
                     GSTAAVTTIEYEPGLQKDFPKMLARLAPSDIEYEHDNRWHDGNGHSHVRASLIGPSLT
                     IPFKNGKLMLGVWQQIVVVEMDNRGRERNIVLQMIGEQ"
     gene            complement(1677..2021)
                     /locus_tag="VHF44_01200"
     CDS             complement(1677..2021)
                     /locus_tag="VHF44_01200"
                     /inference="COORDINATES: protein motif:HMM:NF021425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2127 domain-containing protein"
                     /protein_id="HEX2124196.1"
                     /translation="MESQKHRPLGVTIIAILLILGGLVWLVSGLILLIILVGIVFLAL
                     GIAYFIMAYGLLKGRGWAWTISLILAGIGIITGIYHITQNNLGGAIVSFIINGVIIYY
                     LYRPNVKAFFGK"
BASE COUNT          770 a          491 c          445 g          795 t
ORIGIN      
        1 atgggtggat gtaatggagc cgataatttt gaatctaggg cccatatact ggctatactt
       61 tgcaagcttt attttgattg gaactttcat agtcattaac ctgtttatct cagtaatagt
      121 taggaagtct gaggaagcat atcaacaggt ccagcgagag tcgcaaatac ccttgacgca
      181 acaggagatt atggaagaga taagagaaat ccacagaata ttacaggaga tagaggaaag
      241 aattggtcga gatgataaag gtaacgtcca gcaggaatag tggaaaagat gtttttggct
      301 agcttagaat ttttggtagg atttagtctt gatatataat aaaaagaaga atcgaataag
      361 atatgcgagt gttagcgata ttttctcctg ctatactttt cgcctattaa tttcattaga
      421 aagagaataa gcatagttac acccaccgat acaactatcg tacttaataa gatgcctaga
      481 ctatcaagat caaccagcat taatatactt gcagtattca ctctccttca aattcattaa
      541 ctttatgata tgaaatttcc tgttttgtgt gtgttttatc atatgaaaaa tatagtgtaa
      601 tagcacctaa ccattgcctt accagccaca aagattcagt gcagaataag atcccattgt
      661 taatttgcta ttgttctcca atcatttgca atacaatgtt gcgctccctt cctctattat
      721 ccatctcgac caccactatt tgctgccaaa ccccaagcat caattttccg tttttgaatg
      781 ggatagtaag acttggtcct atcagcgacg cacgtacatg cgagtgtcca tttccgtcgt
      841 gccatctatt gtcatgctca tattctatgt cacttggtgc taatctagca agcatttttg
      901 gaaaatcttt ttgaagaccc ggttcatatt ctattgttgt aactgctgcc gttgagcctg
      961 atacgaaaat tacaacaaca ccgtcctgaa gtttgcttga gccgatagct tcagcagttt
     1021 ggcgcgtaat gtcaatcatc tcattttcac ctttggaaat gacagtaact atctttgtac
     1081 taactggcat ccattataac gagaaacaac agctttattt tgctttatca tggactcagc
     1141 catataggcg cagagtatta aaagaatcaa atcgcagaat caataacaac ttgatcaatg
     1201 tttgtctaaa aacagtgact taatcaagcg ctcatagcgc tcttacaaga attacacagt
     1261 actcatatac aatgcaccaa gaaggcacag gcatttcaga taccaagaaa aaaatgtata
     1321 attgttcttc ctggacaggc tacaagcctc tcagtcaggt attgaaattc tttatatgag
     1381 taagatattt ttattaaatc gattttaatc tcatcaaaaa tcatcaaaca gcctgctgca
     1441 gcaggtgctt tccaagatgt ttttctgcag cattgaataa aattttatca tagtgtcact
     1501 cttgctgtgt attacttgac atcataatac ctatctatat tacgagggat cttcaaggat
     1561 tctttcggta ttatatgttg cgacctatgc gcgcagatac cttattggcg tgtaaagtcc
     1621 gtataataaa gccacccaag tcctgcttcc gttaactgtg aaacgtggga tatcgtttac
     1681 ttaccgaaga acgctttgac atttggtcta tatagatagt aaataatcac tccatttatg
     1741 ataaagctaa ctattgctcc tccaaggttg ttttgagtaa tatggtatat acccgttata
     1801 atgcctatgc cggctaatat taagctgata gtccatgccc aacccctgcc tttcaacaaa
     1861 ccataagcca taatgaaata ggcaatacct aatgctagga atacgatacc gactaagatt
     1921 attagaagaa ttaatccgct tacaagccat accagtcctc ccaatatcag caatattgca
     1981 attattgtaa cgcccaaagg cctgtgtttt tggctttcca tgtagtcctc gcttttttat
     2041 caatcatacg cctcgctctt ggaatagaat gtatacagaa aatgactatt aagtcaaact
     2101 ctttaaagaa atacaaggtt ctacggttat tctctttcac cgtagtccac ggaggtactt
     2161 ccgcttccgc atctttacaa aaaaatcgag ttctaattag agtatatgct aggattaacc
     2221 cacaaaagtt ggtttttaac agatctgcaa gctgattctt tgctcttgcg agaggctagt
     2281 aatgttccag aatagcgcga taaggtgatt tagtagtcaa gaggtatttg tccatattac
     2341 ggatagcttt tgcatatcat attgtgtgca tgcgaagaaa ttatgcgatg gtgaataata
     2401 atagtaatag attcgattgt aggttggaat ttgctttctc tatttgccac ctcaagtatc
     2461 ttcttccaca tagtcctttc aaattcatat gcgattattc c
//
LOCUS       DATABJ010000069         4293 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_270914, whole genome shotgun sequence.
ACCESSION   DATABJ010000069 DATABJ010000000
VERSION     DATABJ010000069.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4293)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4293)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4293
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_270914"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..883)
                     /locus_tag="VHF44_01205"
     CDS             complement(<1..883)
                     /locus_tag="VHF44_01205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein"
                     /protein_id="HEX2124197.1"
                     /translation="MEHFDVAIVGGGSAGLAALRQLSNLGKQAVLIEAGKTVGSKNIS
                     GGILYSKKLKNGKVYNVEDVYGKDFLTEAPIERLITKYILHATSKDKVFSIDLTRAHE
                     YEANFGYSVLLNKLNSWFAKEAEESAEKQGGGIISGVHVQSLSWQQQQQGNDRVIIKT
                     NELEEFEVKAIIAADGVNSEIAELTGARHKFSPDELYQGVKVVVKLPEEIIEQRFQIG
                     PNEGVAHLFAGDITMNHIGGGFVYTNRDTLSIGAVYHYDSLMEDPTEPYVLVNTLLSN
                     PMVREFIKDEVAIKEEID"
     gene            complement(886..2109)
                     /locus_tag="VHF44_01210"
     CDS             complement(886..2109)
                     /locus_tag="VHF44_01210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit
                     alpha/FixB family protein"
                     /protein_id="HEX2124198.1"
                     /translation="MMNTPTTMSSNEGNYYQHLYVVIEHEEGKIIPVSLEMLGEARRL
                     MDDFNKKYSSQEKVVAVVLGNNVRKLCDELILYGADAVIYAESPELQYFRNLVHTKVI
                     SQIAKDKKCVAKFSLDNDAEKFRKPRYMFFAADNIGRHLSSTVLAELESGLASDINKL
                     VIEDLEIRHEHKTKGQPIKYNKTLEMYRPDFSGFLWTTILCLDNRNPSIERDYHPQAC
                     SIIPGVFQPLKQDTSRRGVVVDYAPILEEKDLKVRILNRKIIKSAVDFDNRKAIISFG
                     RGIKDSPEENIKLIEELAKELDAEIGISLPVSKKPYTLSESINSRYIIPDRVIGTSGR
                     KVVPLLYIAAGISGAMQHVMGMKESEFVIAINPDENSPIKDECDVFIKGRIEDIIPKI
                     IKELREQKIPMEVRK"
     gene            complement(2106..3011)
                     /locus_tag="VHF44_01215"
     CDS             complement(2106..3011)
                     /locus_tag="VHF44_01215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="electron transfer flavoprotein subunit beta"
                     /protein_id="HEX2124199.1"
                     /translation="MDKAGIMDNSLNTAVIVKLEPDFSEGNVSYNADGTLNRAETKSI
                     LGPHSAVASSAAFYAKVKYDARVSVGTMGPPIADFALQQAQAICDADELHLYSDRIFA
                     GADTLATAEVLKTGISKMENGKKIDIVFSGHRASDGETGQTGPQTAWKLGYTFLGNVI
                     DYDVDIERRLVRAKRLITLQGFYDIIEEVEAQLPVFITIDPSYKPSFRTISQRLAFVK
                     YKKEAINRAQDYKRYLKIFNAQQLGVDLKFVGLPGSPTIVYKVEKIPKAKASRKAEIV
                     DGSDSEQIRKVVTKIHEVLGGMVIR"
     gene            complement(3195..3926)
                     /locus_tag="VHF44_01220"
     CDS             complement(3195..3926)
                     /locus_tag="VHF44_01220"
                     /inference="COORDINATES: protein motif:HMM:NF024724.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEX2124200.1"
                     /translation="MEDNSAHTASKEEFLFFLENEANLRVDDFIESAIKVAEEIHEGV
                     KREDGFSIFLETHTWPVAIDVVKHYRSTNRNITSVEVASAILHDVLEDNDRILDWYKT
                     KAYGFEADLRYRFGNRVYEIATELKIRPLENYRGRNDEERQLHRFQEYCDILTMAEYD
                     VKTIKLADRLNNMRFLISKAGLNNKVVYDKMKRYMREAEDFYLAYTMLSPKMPEFYRK
                     IRWAYEQLRSAYYEQTLAMPQSQNL"
BASE COUNT         1227 a          877 c          702 g         1487 t
ORIGIN      
        1 tgtcaatttc ctcttttatt gcaacctcat ctttgataaa ctctctaacc attggattac
       61 ttagtaatgt attaacaagg acataaggtt cagtaggatc ttccattaga gaatcataat
      121 ggtatacagc tccaatagac agtgtgtccc tgttggtata aacaaatccg ccgcctatat
      181 gattcattgt aatatcgcca gcaaaaagat gtgcaactcc ttcatttggg cctatttgga
      241 atctttgctc aataatttcc tcaggtagtt tgactacaac ctttacgcct tgatacaatt
      301 catcagggct gaatttgtgt ctggcgccag ttaattctgc aatttctgaa ttaacaccat
      361 ctgctgcaat aattgccttt acctcaaatt cctcaagttc attagtttta attatcactc
      421 tatcgttccc ttgttgttgc tgttgccaag aaagcgactg gacatgaact ccagaaataa
      481 tgccgcctcc ttgtttttca gcactttctt ctgcttcttt tgcaaaccaa gaatttaatt
      541 tatttaaaag aacagagtaa ccaaaatttg cctcatattc atgagcacgt gtcaaatcaa
      601 tagaaaatac cttatctttt gaagtagcat gaagaatata ctttgtaatc aacctttcaa
      661 tcggagcttc tgtaagaaaa tctttgccgt aaacatcttc aacattgtag accttaccat
      721 tctttagttt ctttgagtag agaattccac cggatatatt ctttgagccg actgtctttc
      781 cagcctctat cagtacagcc tgttttccga ggtttgataa ctgcctgaga gcggctaatc
      841 cagctgaacc tccacctact atagcaacat caaaatgctc catatttact ttcgaacctc
      901 cattggtatt ttttgttctc ttaattcttt tattatcttt ggaattatat cttctattct
      961 gcctttaata aaaacgtcac attcatcttt tattggtgaa ttttcgtcag gattgatagc
     1021 aatgacaaat tcagattctt tcattcccat aacatgttgc atagccccgc tgatacctgc
     1081 agcaatataa agcagtggca cgactttccg accactcgtc ccgattaccc tgtcaggaat
     1141 aatataacgg gagttgatcg attcacttag tgtatatggt tttttcgaaa ctggcaatga
     1201 tattccaatc tctgcatcta attcctttgc cagttcttca attaatttga tattttcttc
     1261 tggagagtct ttgattcctc gtccaaaact aatgattgct ttgcggttat caaagtcaac
     1321 agcacttttt attatcttgc gattgagtat tcttactttg agatcctttt cctctaatat
     1381 tggtgcataa tctacaacta ctcctcttct tgaagtatct tgtttaagtg gttggaatac
     1441 acctggaata atgctgcatg cttgaggatg gtaatctctc tctatcgatg gatttctatt
     1501 atcaagacac aaaatagtag tccatagaaa acctgaaaaa tcaggtctat acatctcaag
     1561 tgtcttatta tatttgatag gctggccttt ggtcttgtgc tcatgcctaa tttccagatc
     1621 ttctattaca agtttgttaa tatcggaggc aagaccagat tctagttctg ccaataccgt
     1681 tgaggataga tgtctgccta tattatcagc agcaaaaaac atatacctag gttttctgaa
     1741 cttttcagca tcattgtcta aagagaactt ggctacacat tttttatctt ttgcaatctg
     1801 gctgattact ttcgtatgaa ccaggtttct aaaatactgt aattctggac tttctgcgta
     1861 tattactgcg tcggcaccat aaagtattaa ttcatcacat aattttctga cattatttcc
     1921 taatactacg gctacaactt tttcctggga agaatacttt ttgttaaaat catccataag
     1981 ccttcttgct tcaccaagca tctctaaact aaccgggatt atcttgcctt cttcatgttc
     2041 aattactaca taaagatgtt ggtagtagtt accttcattg ctagacatcg ttgtaggagt
     2101 attcatcatc taattaccat ccctccaaga acttcatgta tctttgtgac aaccttgcgt
     2161 atttgttcag aatctgatcc atctacaatt tctgcttttc tacttgcttt tgccttggga
     2221 atcttttcta ctttgtatac aattgtaggg gaaccaggaa gacccacgaa cttcaaatca
     2281 actcctagtt gttgagcatt gaaaattttt agatacctct tgtaatcctg agctcgattt
     2341 attgcctctt tcttgtactt tacaaatgcc aatctttgtg aaatggttct aaaggaaggc
     2401 ttgtatgatg gatcaattgt aataaagaca ggtaattgag cttctacttc ttcgataatg
     2461 tcgtaaaaac cttgcaaggt tatcaaacgt tttgctcgaa cgagtcttct ttcaatatcg
     2521 acatcataat cgattacgtt gcctagaaag gtatagccaa gcttccaagc cgtctgcgga
     2581 ccggtctgac cagtctcgcc atctgatgct ctgtgtcctg aaaatactat atctattttt
     2641 ttgccatttt ccattttact aataccagtt ttcagaactt cagcggtggc aagcgtatct
     2701 gcacctgcaa atattctatc actataaaga tgtaattcat ctgcatcaca gattgcttgc
     2761 gcctgttgca aagcaaaatc agcgatagga ggacccattg ttccgacaga aacacgagca
     2821 tcatacttca ccttagcata aaatgctgca ctcgatgcaa cagcgctatg aggaccaagt
     2881 atgctctttg tttctgctct atttagagtt ccgtctgcat tgtaactaac attgccctct
     2941 gaaaaatcag gctcaagttt tacaataaca gcagtattta gtgaattgtc cattatacct
     3001 gctttgtcca tctattgcct ttaaatgggt tttggaagaa gaagttgtat gtaagggtgc
     3061 aagccaatgt aagtctcata gcaacctttt tcattggatt caaaagatat cgtggtttat
     3121 atttgtctat ttatagctat tgaggtcaaa gcaagacttt gagaaataag ctgacccaaa
     3181 gcaggcggca gcaattacaa gttttgtgat tgaggcatag caagagtttg ttcataataa
     3241 gcagatcgta attgttcata agcccatctt atctttctat agaactcagg catctttgga
     3301 gaaagcatag tataagcaag ataaaagtcc tcggcctctc tcatataccg cttcatcttg
     3361 tcatagacta ctttattatt caatcctgct ttgctgataa gaaatctcat attgttaagt
     3421 ctatctgcaa gcttgatggt ctttacgtca tattctgcca tcgtgagaat atcacaatac
     3481 tcttggaacc tgtgtaattg acgttcctca tcgtttctac cgcgataatt ttcaagagga
     3541 cggattttca attcagttgc aatttcatat actctatttc caaatcggta tctaaggtca
     3601 gcctcaaaac catatgcctt tgttttatac caatctaaaa ttctgtcgtt atcttctaat
     3661 acatcgtgca aaattgcaga agcaacttca acactagtaa tattgcggtt agtcgatctg
     3721 taatgtttta caacatctat tgcgactggc catgtatgtg tttctaagaa aattgaaaaa
     3781 ccatcttctc tttttactcc ttcatgaatc tcctctgcga ctttgatcgc actctcaatg
     3841 aaatcatcaa cacgtaggtt ggcttcattt tctaaaaaaa ataaaaattc ctccttgctt
     3901 gctgtatgag cagagttatc ttccatgaga tattaagtca atagttaaac aaaagtcttg
     3961 ctgtcatatc tactaaaatc tcataaatat tatatcttaa acatgtatat cttgcaatta
     4021 ggccttttta tgtaattggt ggctcttaaa actatgaatt gaagaatatt tttacatctt
     4081 aatattgatc atactataac aatatattct cgttttgatg attaattctt ccattgctag
     4141 actctagctc gaaagggcgc tttattctat cagaaaatgc attttcacct aaaggtgacc
     4201 agcccgaagc tattgaaaaa ttagtgagag gaatattgga aaaaaatgat gaaggcagac
     4261 gatgccagac tttagttgga gttacgggca gtg
//
LOCUS       DATABJ010000070         2086 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_271500, whole genome shotgun sequence.
ACCESSION   DATABJ010000070 DATABJ010000000
VERSION     DATABJ010000070.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2086)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2086)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2086
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_271500"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..207)
                     /locus_tag="VHF44_01225"
     CDS             complement(<1..207)
                     /locus_tag="VHF44_01225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX2124201.1"
                     /translation="MTNSRGNFLYGFIACGPYELLPEFVFYKIFCPSVETDPNTGEVK
                     TAQCGLRRIEAALLKEYRRDEILLA"
     gene            complement(734..1198)
                     /locus_tag="VHF44_01230"
     CDS             complement(734..1198)
                     /locus_tag="VHF44_01230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124202.1"
                     /translation="MPSDQHTNRLDRLCKGVIAKDSSIRFAGIANQMGNLIETAYREG
                     LQPLMDMRETEHYTIQTVLRASTRETFENKLGKQRYAIAVYEKLIRATVPIVIMGNQY
                     DKDEKQKKQQEKQDFKWFYLLVSFDLGSNVISILEDKILPLIEQFQRDSSVA"
BASE COUNT          652 a          387 c          334 g          713 t
ORIGIN      
        1 ggcaagaagg atctcgtcgc gcctgtattc tttcaaaagc gctgcttcga tccttctcaa
       61 tccacattgt gcagtcttga cctctcctgt gttcgggtca gtctcaacac ttggacaaaa
      121 gatcttgtaa aatacaaatt ctggtaaaag ctcatagggt ccacatgcaa taaagccata
      181 gaggaagttg cccctggaat ttgtcatcaa actgcggtct gcagtcagaa ctatccgttt
      241 gccgcctgat tctaccatgc tttgtgtatc agttattcga tatcctatgg ctataaatct
      301 atattaccat cttttcgagt atgtttctta gtaattaaat aacatttgag attatatatg
      361 ctgctagtgc aatgcttatg aagatacacg tgacaacatg atccgccaat aactcagatg
      421 actctataat tatcaatagc tgtgatgacg aataaaccac tatcatcatt aacttataat
      481 tgacccctat agatcaaaat ctatcgaagt tctgttatga gataaatatt acgattcttt
      541 attattgtgg atagaaataa tcaatcacta tattacgtta ttcctgatgt atataattga
      601 tcttggtaaa atctagatta tttagtttat tgatttgcta tgtcagccag attataaata
      661 gtcaattaat tttctgctat cttgtaactt ttgataagta tagtggggct agaaatatac
      721 tactacttta tgtctaagca accgatgaat ctctctgaaa ctgctcaatt agtggcaata
      781 tcttgtcttc aagaatagat atcacattag aacctaaatc aaatgatacc aataagtaaa
      841 accatttaaa atcctgtttt tcttgttgtt ttttttgctt ttcgtcttta tcgtactgat
      901 tgcccattat gacaattgga accgttgcac gaatcaactt ttcataaaca gctatggcat
      961 accgttgctt gcctaacttg ttctcgaaag tttctcgtgt tgatgcacgt aagacagtct
     1021 gtatggtgta atgttcagtc tcccgcatat ccatcaaagg ctgtagaccc tctctataag
     1081 ctgtctcaat tagatttccc atctggttcg ctattcctgc gaacctgatg gaggaatctt
     1141 ttgcaataac gcctttacat aacctgtcaa ggcgatttgt atgttggtcg gagggcatgc
     1201 ttattctctc agtattggaa gtcttaatag tataaaaact acaagaatga gctataaact
     1261 ctgcatcaat aaattatatg ctctacctgc aacaaatttt tttgcataca atttaactct
     1321 gaaagaagta acatcaacaa gagataatac gagcacacat agtattaatg ttaataatta
     1381 tatcattttt tattatactc cccaatatct agtcaacaac tacatattct ttatagctca
     1441 gattctcttg cttgttgtat ctctgagtac gtgtgtactt tctgtcacat cttctcttta
     1501 tcgttattac actttgcaaa aaagtatgaa taatgtcatt ttaactattc agattatact
     1561 tcttcacaat agttactata tgaagcccta ctataatgcc cattctgact gtctctattc
     1621 catattacag cagagctcat caaccgagtt gcagtcgcat tcctcttaaa ttacaaaatt
     1681 ttgtatcttc aaaataatat tatgaaatga tgttataaag aatcaccgag taacaatcct
     1741 tcaaatgtga ccactcattg ctcaggtttg ctgttcatgt actcctatat tatatacatt
     1801 ttattagaat catcaagact tgataatttg aagtgtagat ttcgtattat tcaacgcttc
     1861 tgcgggataa agatacagaa actcatagat agattgtggc catagaggta ttgctttgag
     1921 tctaaaagat gaggctataa gcttgcaccg aatgttgaaa ggtaagatag aaattcaaag
     1981 cagaatttct gtagaaaatc tctttgaaga agaaaaagga actcttggtt tgatttatac
     2041 tcctggagta gcatatgctt caaaagaaat aagcaacaat aaggag
//
LOCUS       DATABJ010000071         2597 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_488703, whole genome shotgun sequence.
ACCESSION   DATABJ010000071 DATABJ010000000
VERSION     DATABJ010000071.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2597)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2597)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2597
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_488703"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1577)
                     /locus_tag="VHF44_01235"
     CDS             complement(<1..1577)
                     /locus_tag="VHF44_01235"
                     /inference="COORDINATES: protein motif:HMM:NF020976.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase D family protein"
                     /protein_id="HEX2124203.1"
                     /translation="MNRKVAVITFTVSFGLLILSSNISMALLLHHPTAYAAQQDSNNS
                     LFITHGIASGDVTNQSVIIWSRANREAQLHVEYDTDSNFSHPKSTNIALANQTTDYTA
                     HAKLEGLSPDTVYYYRLWFSSDTSSSSYSKNASVVSDNMTGSFRTAINPSASSNKDIK
                     FIFAADLGGQMHCRQIDTGGYSIFSKMQELSPDFFIANGDMIYAGDKCPSDGPDEWRN
                     IQGNFSGIADPDINWTDTSQVRDVYLKHWQYNRGDPYLQRFLQNTSMYSQWDDHEVIN
                     DFGASWQYWNSFNTDREGYPNIVKAGREAFFNYSPIDRNPEDTNRIYRAFNWGPDLDL
                     LILDARSYRSPNSMADKPENNKTMLGSEQLQWLKQKLLTSSATWKVLSSDVPISVPTG
                     SNASILGRDGWASGGNETTTTTTINSFSKTGFESELQGLLEYLDYNNIKNIVFVTADV
                     HFPANIRYEIDANGDGDKLIFHEIISGPLSAFRFGMPGGIPIPNLDTTFNPRLLYEEG
                     GIFNFGYVKIQRTPEDN"
     gene            complement(1898..2272)
                     /locus_tag="VHF44_01240"
     CDS             complement(1898..2272)
                     /locus_tag="VHF44_01240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124204.1"
                     /translation="MRKENDIKLRIDMLQAQSKTIAEMLVKALSERNTISINEYSARL
                     ANIRDRIEELLWVLNKKDTPSNLLLEVYTINVRGKKEVSLTMAQILEKLKIGELTMND
                     LQADVSDKVRKAALHSKKFNHM"
BASE COUNT          808 a          471 c          443 g          875 t
ORIGIN      
        1 ttgttatctt caggcgttct ttgaatcttc acataaccaa agttgaagat accaccctct
       61 tcatatagca atctgggatt gaatgttgta tctaagttgg gaataggaat accgcctggc
      121 ataccaaatc taaatgcgct aagtggacca gagataatct catggaatat taatttgtcg
      181 ccatcaccat tagcatcgat ttcatatctt atgttggctg gaaagtgaac atcagctgtt
      241 acaaagacta tatttttgat gttgttataa tctagatact ctaaaagtcc ttggagttcg
      301 ctctcaaaac cagttttcga gaaggaattt attgttgttg ttgttgttgt ttcgtttccg
      361 ccgctagccc aaccatctct tcctaaaatt gaagcattag agccagtagg aaccgagatc
      421 ggtacatcgc tacttaagac tttccatgtt gctgaagaag tcaggagttt ttgttttaac
      481 cattgaagtt gttcacttcc tagcatggtt ttattatttt caggtttgtc agccatactg
      541 ttaggactcc gatatgatct tgcgtctaga attaataggt caaggtctgg tccccaatta
      601 aatgctcgat atattctatt tgtatcctct gggtttctgt ctataggtga gtagttaaag
      661 aatgcttctc tcccagcttt tacgatatta ggatatcctt ctctatcagt attaaaggaa
      721 ttccaatact gccatgacgc tccaaaatca ttaataactt cgtggtcgtc ccattgagag
      781 tacattgagg tattctggag aaatctttga agatatgggt ctcctctatt atattgccag
      841 tgttttagat aaacatcacg tacctggctt gtgtcagtcc aattaatatc tggatctgct
      901 attccagaga aatttccttg tatgtttcgc cattcatcag gaccatcgga aggacactta
      961 tcaccagcat atatcatatc accatttgca ataaagaaat caggcgataa ttcttgcatc
     1021 tttgaaaaaa tggaatatcc tcctgtatcg atttgtcgac aatgcatttg acctcctagg
     1081 tcagcggcaa aaataaattt aatatcttta ttactagatg ctgaagggtt tatagcagtt
     1141 ctaaaagacc ctgtcatatt atctgaaact acagacgcat ttttactgta agaagaagaa
     1201 gaagtatcag atgagaacca cagacgatag taatagacag tatcagggct taaaccttca
     1261 agttttgcat gcgcagtgta gtctgttgtt tgatttgcta gtgcaatgtt tgttgatttt
     1321 ggatgtgaaa agtttgaatc tgtatcatat tctacatgca attgagcttc tctgttggca
     1381 cgtgaccata ttattacgct ctggtttgta acgtctccac ttgcaatacc atgagttatg
     1441 aacaaagaat tattgctgtc ttgttgagct gcataggctg ttggatgatg caataataaa
     1501 gccatactga tgttactgct aagaataagt aagccaaaag aaactgtaaa agttataacc
     1561 gctacttttc tattcaagaa aaacgttcat caacgatatg tcgactattc tatataagca
     1621 tgtacatata aactaatatt ttattttttt atgcaatgga ctgacaagcc ggtgacaata
     1681 tggagctgag tacaaactaa attggaaaat acaaaatgtt tttcttgtgt aactaatagc
     1741 attgcatata taataataat aagtgacaat acttctctca agttcatacc acttccggca
     1801 cataatcata tgacagcgtc atagacagta aatgaaatcc cagatagtta cgtacatatc
     1861 aattttttcc ttctctcttc tttatgtaat tttataatca catgtgatta aatttttttg
     1921 aatgcaatgc cgcctttcga accttatcgc taacatcagc ttgaaggtcg ttcatagtca
     1981 gttcaccaat cttcaacttt tctaaaattt gagccatggt taaagatacc tccttcttac
     2041 cacgcacatt tatcgtgtaa acttcaagaa gaagatttga tggcgtatct tttttattta
     2101 atacccacaa gagttcttct attctatcac ggatattagc taacctagcg gaatattcat
     2161 taatagatat agtattacgt tcggatagtg ccttaactaa catttcagca atggttttag
     2221 actgtgcttg aagcatatct attcttaact tgatatcatt ttctttcctc aattgttaaa
     2281 tgaaaacact ctttaatgta ttaaatgcag ctacgttcaa gagaacgaga ctagtacatc
     2341 atcatttact attatgccta actctaacta ttcagagttg cgtaccatgg gaaatataac
     2401 aagatataca ttaactaatt gcatataaag cgggtgctca aatacttata atatatatca
     2461 acatcgagat agatattgca ataaaaacag gagctaatgg agtggatact tcctctttca
     2521 gcttgtctta gaaaaattag attagataaa aaatattctg ttaaaagatg cataatcaat
     2581 gcaaaattca aaccagt
//
LOCUS       DATABJ010000072         2298 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1142769, whole genome shotgun sequence.
ACCESSION   DATABJ010000072 DATABJ010000000
VERSION     DATABJ010000072.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2298
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1142769"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(445..1599)
                     /gene="hflX"
                     /locus_tag="VHF44_01245"
     CDS             complement(445..1599)
                     /gene="hflX"
                     /locus_tag="VHF44_01245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEX2124205.1"
                     /translation="MLNSNKTALLITYPLEEVTKEAISLADAARYSIIKIVNQRNLTQ
                     SKYGIGRGKAEEVKELVEQLKPDVIIFDEVLKPSQQYNLAKVCKIDILDRERLILEIF
                     ELRASTAESRIQIKLAQLRYDMVRAREKVRLARAGEQPGFFGMGKYDADVYYLDIKKR
                     SAILKKKLEREETRRELFRIQRSRAGLPTISIAGYTSAGKTTLFNTLTGESKMEGKEV
                     FTTLSTFTRAISLKNDQKLLISDTVGFISKLPAYMIDAFKSTLQDITYSDLVLLVVDI
                     SQPIEEIKKKLDSSIHIMNELKVPMTKVLYVMNKVDMTNLENAYDKCDKLGFFPFGPY
                     VVLVSAKTYFNIDKLKDSIALRIFSKDTKKESTEIMSEIGDGKTRNNINS"
     gene            complement(1752..2213)
                     /locus_tag="VHF44_01250"
     CDS             complement(1752..2213)
                     /locus_tag="VHF44_01250"
                     /inference="COORDINATES: protein motif:HMM:NF016098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124206.1"
                     /translation="MSSEIINPKVSIKTKSELIDQVFDAISKSGENGIFQTELCKVFS
                     LDSRDGSRLVGNLEKQSLISREKILHNGRWTYKLVVKKSSIVAELAKKPIELANIEGA
                     PCFSCNYQHLCSSDDETSQYSPAKCMWIEEWVLMGFSRMLTSQDGSQSKEL"
BASE COUNT          714 a          414 c          338 g          832 t
ORIGIN      
        1 ttgtgcgggt cgtgtgacca ttgtcagatt caataatctc agtatcgaat ctccatgtta
       61 tgagcgcaac tggaggtcgg agaatcacaa aatggcacta ggaccacaat catcccgacg
      121 ccgcctttaa ttgttacgtt cggatctacc cctttacatt attcacatat taagatttgc
      181 attaaaagaa aatgattatg ctcttgttga cgcttagatt cacatggata cggtgcattt
      241 atattcttat caatgaatgg agcggattta cttcaattat atgataatat tcagggttat
      301 aactcatgtt gacagaaata ggtgaattgt tatagcatta tgaaaggaga tatttaattg
      361 acaaggtggc accatctaac actaaaatat atataccaaa ttaaaatgat acaattcagc
      421 aaaaatattg tatgtgatta tacactacga attaatatta tttctagttt taccatcacc
      481 aatctcactc ataatttctg tcgattcctt ctttgtatcc ttcgaaaata ttcgtaatgc
      541 tattgaatcc tttagtttat ctatattaaa atatgtcttt gcagacacta gtacaacata
      601 cggtccaaaa ggaaaaaagc ccagtttatc acatttatca tatgcatttt caagattagt
      661 catatcgacc ttattcatca catacaagac tttagtcata ggtactttta attcattcat
      721 tatgtgaatt gaactatcta atttcttctt aatctcttct attggctgac tgatatcaac
      781 tacaagcaaa acaagatcag aataagttat atcctgaagt gttgatttaa atgcatcaat
      841 catataagct gggagtttac taataaagcc tacagtatct gaaattaaga gcttttgatc
      901 atttttcaaa ctaattgctc gagtaaaggt agatagtgta gtaaatacct cctttccttc
      961 cattttagat tcccctgtca aagtgttaaa tagagtagtc tttcctgcag aggtatagcc
     1021 agcaatagaa atggtaggca aacctgctct tgatcgttga atacgaaaaa gttctcttct
     1081 cgtctcttct ctttctaatt ttttcttcaa gatagcggat cgtttcttga tatctagata
     1141 atagacatca gcatcatatt ttcccatacc aaaaaatcct ggctgctctc ctgctcttgc
     1201 gagtctaact ttttctcgag ctctaaccat atcgtatcgt aactgtgcaa gtttaatctg
     1261 aattcttgat tccgcagtgc ttgctcttaa ttcaaagatc tctagaatta agcgctctct
     1321 atctagtatg tctatcttac atacttttgc taaattatat tgttgacttg gctttaacac
     1381 ctcatcaaaa ataattacat ctggttttaa ttgttcaact aattccttta cttcttctgc
     1441 tttcccacga ccgataccat attttgactg tgtaagatta cgctggttta ctattttaat
     1501 tatagaatat ctagcagcgt ctgctaaaga aatcgcttct tttgttacct cttctaaagg
     1561 ataggtgatt agcagagctg ttttatttga atttagcact attttttatt cctcttttaa
     1621 taataatatt gaacttataa acaatttaaa tctaaattaa gatatctgta aaaagagtgg
     1681 taataaatat agagacacct gtctgtatta ttttaataaa accaaagtta tagcataatg
     1741 taaatttaca actataattc tttactttga gaaccatctt gtgaggtcaa cattctgcta
     1801 aaacccatta aaacccattc ttcaatccac atgcattttg cagggctgta ttgactagtt
     1861 tcatcgtctg acgagcatag atgttgataa ttacaactaa aacaaggagc accttctatg
     1921 tttgctagtt ctataggctt tttggctaat tctgcgacta tggaagattt tttaacaact
     1981 aatttatacg tccatctgcc attatgtaat attttttcgc gagatataag tgactgtttt
     2041 tctagattgc ctactaatct tgagccatct ctgctatcaa gcgaaaacac tttacaaagt
     2101 tcagtttgaa atattccgtt ttcgccgctt ttggatattg cgtcaaatac ctgatcaatc
     2161 aactcacttt tagttttaat tgaaactttt ggattaatta tttctgatga caaaagatat
     2221 gttttattat cagttattga tataaaagtc ttcagattgt ataaattatt ctaatgtaga
     2281 ggcacttaat gccactgc
//
LOCUS       DATABJ010000073         1532 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1144077, whole genome shotgun sequence.
ACCESSION   DATABJ010000073 DATABJ010000000
VERSION     DATABJ010000073.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1532)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1532)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1532
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1144077"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            539..805
                     /locus_tag="VHF44_01255"
     CDS             539..805
                     /locus_tag="VHF44_01255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124207.1"
                     /translation="MTMPKGFGSRPNNGGKRNFNDWWNTVPADLKQKARQGDEQNKPL
                     LNQINYVLLHLHLAGKHDVKPSHDELKDWLHSGQVDVLRMTAKK"
     gene            1120..1368
                     /locus_tag="VHF44_01260"
     CDS             1120..1368
                     /locus_tag="VHF44_01260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124208.1"
                     /translation="MSKDNNNNEKTGQSSSQWAELIGELFDRLTGKGASVTYSFENFV
                     IDIPKAVGPRGQELGSAKWTINGKLLITAETHKSTGAD"
BASE COUNT          551 a          226 c          272 g          483 t
ORIGIN      
        1 tgattctgtt gtggttgtgg ttgtggttgt ggttccgaca taatacaagt aaatccttag
       61 gataatttaa atctagaaga tggaagtaaa gcctgctatg ttagtgagta taaatgaata
      121 ttaaaaggca cgtactaatt ctctaaatta tggttgagat taaaataagt ggattaaatt
      181 gatccaatct acaagcaaaa agattactag gtagcttgta tgttgatctg aagcagtaat
      241 caaccttcta tcgaaggtgc ttcctttgga ctatactcta tattcctact ttgtcatggt
      301 gaggaattca tctgtaagaa gcatcattta gtttttttga atacaattgt cttcaatacg
      361 aattcttata agggctattt tattacgcga ttgtttcaat cgaaaacaag cattataaga
      421 tatactttga tattaacttt ttcttgatag cttacttgta taacagttta aacagacgat
      481 atgtcacgaa cgtaaacaaa tacatttaat aacttcgtct tacctgaatt ttttttatat
      541 gacaatgcca aagggattcg gttcacgacc taataatggc ggaaagagaa acttcaatga
      601 ttggtggaat actgtaccag cagatttaaa gcagaaagct cgtcagggag atgagcaaaa
      661 caagcctttg ttaaaccaaa ttaactatgt ccttttacat cttcatttag cgggcaagca
      721 tgatgttaag ccatcccacg atgagcttaa ggactggctt cacagcggtc aagtagatgt
      781 acttaggatg actgcgaaaa aatagaaaat cctaaattat tatttttact tcaaatattt
      841 ttatttacta aagcatttat tactatatac atcataaagt aattatttat caatttgttt
      901 tagccggtat ttgttacgac tgcaggtttg aaacatacga ttagcggaat attcttaaat
      961 ttagtaaata aatttcttaa gtcaattgtt ttacaatgaa tcgagcacaa tttaaatcta
     1021 ataactcgtt tatattgata tatgatgatt aacagccttt ataacaactg aaataatttg
     1081 tatgctttta aattcattgt ctgtatatat atggtaacta tgagtaaaga taataacaac
     1141 aatgaaaaaa caggacaatc atcaagccaa tgggcagaat tgatcggaga attatttgat
     1201 agattaactg gtaaaggagc atcggtaaca tactcctttg agaatttcgt aatagatatt
     1261 cctaaagcag taggtccaag aggtcaagag ttaggcagcg ctaaatggac cattaacggc
     1321 aaactcctaa taacagctga aacgcataaa tcgactgggg cagattaaaa gaacactatt
     1381 tcattagtcg catgaagata cgatagagtt gatgcttcaa tacataaacg ctcaaaagat
     1441 gcatggtagc aaaagctttg aaatgtgaac aaacgcaatt acaataagac tgaaagaaaa
     1501 acaaccacga ataggaaaag atatatagat gt
//
LOCUS       DATABJ010000074         6369 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1144417, whole genome shotgun sequence.
ACCESSION   DATABJ010000074 DATABJ010000000
VERSION     DATABJ010000074.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6369)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6369)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6369
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1144417"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..358
                     /locus_tag="VHF44_01265"
     CDS             <1..358
                     /locus_tag="VHF44_01265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124209.1"
                     /translation="DSGLCNLVRIEDLNVIGPPVVGASRMVAEAEPFEALFNVSLGTW
                     LDKDKERLSRDYGIHIKKNVLKQQNMGRKDRKHILCDFRNSQSIWSMLDKLRIYEFCK
                     ISAGYFSFKNIKIRKK"
     gene            complement(686..1321)
                     /locus_tag="VHF44_01270"
     CDS             complement(686..1321)
                     /locus_tag="VHF44_01270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124210.1"
                     /translation="MFQEIKFASTSTKAASIITLMVVTQLCLYQNLSATSAFGQLGVQ
                     YSVYNVIIQGQALDISFQREGQLLITQVPIGPAGTQNGINPLEVFLISGNPGGSPESG
                     AIWFMTNNAFLGSDSQIDLAFTTFDPETQIITVQPDPNLSAVGANVFNARSGLLANAY
                     QIFDGAMQIQSQDNWQTITGQINILGTGAIFHSNSPYTAVISGTYAGEAIL"
     gene            1647..1790
                     /locus_tag="VHF44_01275"
     CDS             1647..1790
                     /locus_tag="VHF44_01275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124211.1"
                     /translation="MVQFFCSMYASCSQRMMTYANTTCYATLAINEEGASYQEQEVID
                     DRI"
     gene            complement(1951..2910)
                     /locus_tag="VHF44_01280"
     CDS             complement(1951..2910)
                     /locus_tag="VHF44_01280"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124212.1"
                     /translation="MTRNFLVGLNKPCFGGQYDHDLGNNQFSKWRPYLPNNFDTVGSF
                     FSQVYDIDLVRIWLFEGMEGLIFDDNNELVSIETTFLKSLKKILDLAAQSNIRVYLCL
                     FDAWAAKHRPATLDAMGLAIHGTRFISNILPQLCEFLSNHTATLFAIDLMNEPEGLIE
                     YNITTWNELESALNKWCNYFHNNHDFKCSIGWMRRKNAAKYSYLDVDFCDFHIYNESG
                     EIPYYDWNDFGKKLCIIGECGYPVIDDSPRQLALRRRYGVWIAKKMMIDACNKSYYGI
                     LSWPIDGPQMDEANRQLNSTVVHLARQLKTGTNYFNNPSTYTI"
     gene            complement(2968..3162)
                     /locus_tag="VHF44_01285"
     CDS             complement(2968..3162)
                     /locus_tag="VHF44_01285"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124213.1"
                     /translation="MTNDIAIHWKRITLGFANGRRWDDDRAPNIDGIRRLCEYSNQDV
                     RICGISSLISPSFCQESGNE"
     gene            complement(3807..4358)
                     /locus_tag="VHF44_01290"
     CDS             complement(3807..4358)
                     /locus_tag="VHF44_01290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124214.1"
                     /translation="MIVRYTETDMMRILLMVISIFFMLTPMLTADSATGITATAIPVT
                     ISSIVPISSTANSTIADTPLECCTPLLLVPIASSGNNVYVVWSGNDTGHLEITFRAST
                     DNGQTFEDKVNLSNTPGVDSIDPQISASGNHVYITWWEDYGNGTRVPFFKTSNDYGIT
                     FEPAFSLSRNFGQIAMQDNINNE"
     gene            complement(4493..5713)
                     /locus_tag="VHF44_01295"
     CDS             complement(4493..5713)
                     /locus_tag="VHF44_01295"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124215.1"
                     /translation="MDIVLLFKVLFTLFLLLLIPISNISIPIPGALADSPSFSRHEVG
                     DEQRDGININGTVGTQATDDYKDPLDNSTDILKITYLSDAKNLNASLWLAGNFTNNPA
                     VGGAQAMVYGMLLDVDSNPKTGFQGVDYQLEVQWMNSFKTWNMFLGEYPSVDNPSTKD
                     PADYLKILHTKGNYSDFSVDNKPYVTLSLPLKDVAFPTKFKVMYYAVVIYDHSNMVVD
                     LGSWIDIPPMDLAISTLPNPVILRQGEQKNIAIQLKSNHGLISDVASFLPIENYSKIE
                     IQPSNSNGLDRPNASTSNSGPTTFRIAVSRDAEIGEYTIPILVDISTGSIFPSEFLRL
                     SNFNFSVPTKGNVLRVTNLTMSVIEPVTFQEQIREFWSAYGGIISLVGAGFGGGLATI
                     VLDRLKSRKNNNHN"
BASE COUNT         1967 a         1203 c         1195 g         2004 t
ORIGIN      
        1 tgattctggc ttgtgtaact tggtcaggat tgaagatttg aacgtcatcg gtcctccagt
       61 cgtgggtgct agtcgtatgg tggcggaggc agaaccattt gaggctctct ttaatgtatc
      121 actcggtacg tggctagata aagataagga aaggctatct agagattatg gaattcatat
      181 taaaaaaaat gtattaaaac agcagaatat ggggagaaag gacaggaagc atattctgtg
      241 cgatttcaga aatagtcaaa gtatatggtc gatgctagat aaattgagaa tatatgaatt
      301 ctgtaaaatt tcggcagggt atttttcttt caaaaatata aaaataagaa agaagtaagg
      361 gacccagagg gactcagcaa aaaatttgaa atttggactc acggaattac caaaacggaa
      421 taaaaataat gatcaaattg cctatacatg cccgtattaa ttatagagtg ctagcgatcc
      481 ctttattgtt acgaagttgc ttaccaatca tttattggaa aattgtatga taacacagat
      541 agcatgctat acagaaatca agcagaggtt gtagtttgtt attacatata ttacttgttt
      601 ctttttatcc gcaaattata gaaagagtgc tcattcctaa agtcttaagc cgtttggcca
      661 caacaacagc caaaatacgt gcaaactaca aaatagcctc tcccgcatac gtgccactga
      721 tcacagcagt atacggacta tttgaatgaa agattgctcc tgtacccaat atgtttatct
      781 gacccgtaat agtctgccag ttatcctgtg attgaatctg catcgcgcca tcaaagatct
      841 gataagcatt tgctaagagt cctgatcgtg cgttgaagac attagcgcct actgcgctca
      901 agtttggatc aggctgtaca gttattatct gtgtctccgg atcaaatgtt gtgaatgcaa
      961 ggtcaatctg tgaatcgctg cccaagaatg cattgtttgt cataaaccaa attgccccgg
     1021 attcaggaga tcctccagga ttgcccgaaa taagaaagac ctctaaggga tttattccat
     1081 tttgtgtacc tgcaggacca atgggaactt gagttatgag taactgtcct tctctttgaa
     1141 acgatatgtc taacgcctga ccttgaatga tgacgttata tacggaatat tgtacaccca
     1201 gctgaccaaa tgcagaggta gcagaaagat tttgataaag acaaagctgt gttactacca
     1261 taagtgtaat tattgaggct gcttttgttg atgtcgaagc aaattttatt tcttgaaaca
     1321 tgaggatttg agtttttagg gcgataatat atgatattac tcattctatg ctataatcta
     1381 tgaaaacatt ctgaaagaat tgtatgcata ccttgttaat aggatgtatg cagtcaggcc
     1441 gcatatatac atattacgtc gctaggtcaa ttaggcctcg cgctttataa ttttctgccc
     1501 tacagtgttt gtgcgtcact atatcatata cacgaattag caatcagaat tcttgtcgct
     1561 tattctgttg ccgagagttt tgaagatatc gcaaatttag ttctgctaat tgtctaaagg
     1621 gatcaaaagt atttaaagcg aatacaatgg ttcaattctt ttgctcaatg tacgcaagct
     1681 gttctcagcg tatgatgact tatgcaaaca caacttgcta tgcaacgtta gctattaatg
     1741 aagaaggtgc atcatatcaa gaacaagagg ttattgatga cagaatataa aaggtataaa
     1801 gcttcctttt gcaaagaaca tatacgctga aaatattgag caagagcata cataataata
     1861 ataataattt caaaactgaa gaaggcagaa tgagagttgg tctgtgttta ttatacttag
     1921 gttggcggca taaaagatga taagtataga ctaaattgta taagtggaag ggttattaaa
     1981 ataattagtt ccagtcttga gctgtcttgc taggtgaact acggtagagt tcaattgtct
     2041 atttgcttca tccatttgtg gcccatctat tggccaagac aaaataccgt agtaggactt
     2101 attacaagca tcaatcatca tcttctttgc aatccaaaca ccataacgtc ttctaagtgc
     2161 gagctgtctt ggactatcat caattacagg atatccacat tcacctatta tgcagagctt
     2221 ttttccaaaa tcgttccaat cataataggg aatttctcct gattcattat aaatatgaaa
     2281 atcacaaaag tcgacgtcaa ggtaagaata cttggcagca ttttttcttc tcatccagcc
     2341 tatactgcat ttgaaatcat gattattatg aaagtaattg caccatttgt tgagcgcaga
     2401 ttccaattcg ttccatgtgg ttatattgta ttcgatcaat ccctctggct cattcattag
     2461 gtcaatagcg aagagcgtag cagtatgatt tgacagaaat tcacataatt ggggtagaat
     2521 gttgctgata aatctagtcc cgtgaatcgc cagccccatc gcatccagag ttgcaggtct
     2581 gtgttttgct gcccaagcgt caaatagaca gagatacacc ctgatattac tctgagcagc
     2641 caagtctaat attttcttca aagatttcag aaatgtcgtt tctattgaga caagctcgtt
     2701 attatcatca aatatcaaac cttccattcc ttcaaatagc caaattctta ctaagtcgat
     2761 gtcataaact tggctgaaaa aggatccaac agtatcaaaa ttgtttggaa gatagggccg
     2821 ccatttagag aattgattat ttcccaaatc atgatcgtat tgtcctccaa agcagggctt
     2881 attcaagcca acaagaaaat ttctcgtcaa gttctgctac tcagcctcat acaatgcatt
     2941 ataatataat ctcagattat tatatgatca ttcatttcct gactcttggc agaaagaagg
     3001 agaaatgagg ctagaaatgc cgcaaattcg gacgtcttga tttgaatact cacatagccg
     3061 tcgtattcca tcgatgtttg gagctctatc atcatcccac cgccttccat ttgcaaagcc
     3121 taatgttatc cttttccaat gaatagcgat atcattcgtc atatcgtaga taagtttgac
     3181 caccttgaca tcgtttcaaa tagccgatcc attgatttct cttcggtcat agcgatcttt
     3241 gtattctatc aaaaggatac tatattattg ataatccagt atggatcttg ctttatcctt
     3301 tatgtgaata tcctataaag atcctttatc gattatgtta ttattaccca tcaagccaat
     3361 tttggtcaga agacatcgca gtcttgtagt atgcccctac ctagttacag agctgttcaa
     3421 tgcactaagg aataacagtg cgccattgtt ggtttgtcgt ttccgctgtt atggtactgt
     3481 atttttttct tgctaccgag attttgcttc ttacctttta tttgtgaaat ccgtcattaa
     3541 gcacatctga aaggtaggcc cagagggatt cggcaaaaac ttcaatattc ggactaaatg
     3601 caactagaag gcaggttcta agacaaagac atttgaatat tgcatgacca ggatttattt
     3661 ctccaggttg aatgatacat aatcttgctc ctcttggata cctcatcgag atagataccc
     3721 aagatataat tattggattg aacttcagcg acgatagaat tcgctgttct tccgttttgt
     3781 tctaatttgc ggtatcaaca taaccattac tcattattga tattatcctg catagctatt
     3841 tggccgaaat tgcgagatag cgagaatgcg ggctcaaatg taatgccata atcattgctt
     3901 gtcttaaaaa agggtactct tgttccatta ccatagtctt cccaccatgt tatgtagaca
     3961 tgattaccgg acgcagatat ttgcggatct attgaatcca caccaggagt attgctcaag
     4021 tttaccttat cttcaaaagt ctgtccatta tcagtgctcg ccctaaaggt tatttcaaga
     4081 tgtcctgtgt cgttacctga ccatactacg tagacattat tgccagaact ggctattgga
     4141 accagaagga gtggagtaca gcattcgagc ggagtgtcag caatagtaga atttgcagtg
     4201 gagctaatag gaacaatact ggaaatagtc acaggaatag cagtagctgt aatgccagta
     4261 gcactatctg cagtaagcat cggcgtaagc ataaaaaaaa tagatataac catcaataat
     4321 atcctcatca tatcagtttc tgtatatctt acgatcattt atcatcctca tattaggtta
     4381 ccgttatttt tatatggtat cggaagggag tcacaatagc cgcgtttaat tctgattccg
     4441 atttgctgcg tgcatactat taattattat tattattata acaggctata tcttaattat
     4501 gattattatt ctttcgactc tttaagcgat ctaatacaat agttgccaag cctccgccaa
     4561 atcctgctcc caccaaactt atgatgccac catatgcgct ccagaattct cttatttgct
     4621 cttggaatgt tactggctca attaccgaca tagtcaaatt tgtaactcta agtacatttc
     4681 ctttagtagg tactgaaaag ttaaagttag aaagtctaag aaactcagat ggaaaaatag
     4741 agcctgtaga tatatctacc aaaataggga ttgtatattc tccaatttct gcgtccctag
     4801 aaaccgcgat tctaaatgtt gtcggcccac tatttgacgt tgatgcgtta ggtctatcca
     4861 gtccatttga gttgctaggt tgtatctcta tttttgaata attctcaatt ggcaaaaaac
     4921 tggcgacatc agatatcaat ccgtgattag attttagttg tattgctata tttttctgct
     4981 ccccttgcct taggataacc ggatttggca atgtagatat tgcaagatcc attggaggaa
     5041 tgtctatcca actgccaaga tccactacca tatttgagtg atcatagatc actactgcat
     5101 aatacatcac cttgaatttg gtaggaaaag cgacatcctt tagcggaaga gataaagtaa
     5161 cgtatggctt gttatctaca gagaaatcag aataattccc ttttgtgtgg agaattttga
     5221 gataatctgc tggatctttt gtcgaggggt tatcgactga aggatactct cccaaaaaca
     5281 tgttccaggt tttaaatgaa ttcatccact ggacctctag ttgataatca acaccttgga
     5341 agccggtctt gggattagaa tcaacatcca acaacattcc atataccatt gcttgagcgc
     5401 ctcctacggc aggattattg gtaaaattgc cggccaacca aaggcttgca ttcaggtttt
     5461 ttgcatcact taggtatgta attttcagaa tatctgttga attatctagt ggatccttat
     5521 aatcatcggt tgcttgggtg cctacagtgc cattgatgtt tataccatcg cgctgctcat
     5581 ctcccacctc atgacgagaa aaagatggag agtccgctaa agcgcccggg ataggaatag
     5641 agatatttga aataggtatt agaagtagca gaaataaggt aaataatacc ttgaataaaa
     5701 gaacaatgtc catacttcga gttctcttgt acccacttct ttagcatata aagatatttt
     5761 aatactgaat agataaacaa acaatcaatg caagataatt gcaaagataa gattgtgatg
     5821 cgtaaaatac tggaagaccc atcaggatga agcgcatagg ttcttagttt gcatccttct
     5881 ggttatggtt gtcgtatacc ttttaacact ctctgttgtg ctagcgtgag ttggaagaca
     5941 agtacatcat tattataaac atatacctac gactaagagt taatatctat ttcatcgtta
     6001 cgtcttcaaa gattttttag tggccgggat cttgtagaaa agtcttataa tcgttacctt
     6061 gaagagatat tgaaatcgac ctcgctatac aaagaagaca acagcggata aaaagtattt
     6121 attgtttagc cttatttagt gcacgtctgc ttcaactacc tgcaaaaatt cttgtcaata
     6181 aagaacacac ctcatactaa cttcgtttac tgacttactc caggcgtaat cagataggaa
     6241 tgacaacaat tatgactaaa tcgattaaat gtagcatcat aaaaaataga gggctggcgg
     6301 ccatatcagt agaattttat acaatcgcct gccatttctt ctattggaat ataacttcct
     6361 tttcccttt
//
LOCUS       DATABJ010000075         1584 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_275963, whole genome shotgun sequence.
ACCESSION   DATABJ010000075 DATABJ010000000
VERSION     DATABJ010000075.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1584)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1584)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1584
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_275963"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(73..696)
                     /locus_tag="VHF44_01300"
     CDS             complement(73..696)
                     /locus_tag="VHF44_01300"
                     /inference="COORDINATES: protein motif:HMM:NF024997.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DDE-type integrase/transposase/recombinase"
                     /protein_id="HEX2124216.1"
                     /translation="MERNRTHPAVISYGLYLYFNSRSYRCASKCLDLITKRTHVSIWK
                     WVQKYANYADRFKVNKHLVKEIFVDETLIQIDGQDYWLWIAYEPNINSCLMMHLSKER
                     TIFICYHFFKQLRTRYGRKPIHTDGAPWYNDACKWLRLKHHVYGVELKNVMERFIQKI
                     KDRTECFDDHFPCRKEKCDRQHVNNWLKMFVLYLHMRMNRIRFMKFY"
     gene            823..>1584
                     /locus_tag="VHF44_01305"
     CDS             823..>1584
                     /locus_tag="VHF44_01305"
                     /inference="COORDINATES: protein motif:HMM:NF013714.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEX2124217.1"
                     /translation="MIVPIADDLRRIAKGEILSDNWSRKIYSVDASSQSIIPSVIACP
                     HDEHDIEKICQYSISKGIAITARGAGTGLLGQSLSDGIVIDFTKYMNKIIEIEDDYIV
                     VQPGVVKGRLDNELKKKGKIFPPDPASSNYCTIGGMIANNSSGAHCLGYGSTIDFIEE
                     ISVVYSDGSFGYVRSNNEFDDKITMFLRLLSPYANLIHERYPKVTKNSCGYRLDAVLN
                     SQRLAPQKLFAASEGTLGIVTSAKLKTLDVPLYSHL"
BASE COUNT          524 a          284 c          265 g          511 t
ORIGIN      
        1 ggtcaaggta gcaatattac cagacacaca gctattgaca tccaaaggct ctgttaactt
       61 aaccacccct gatcaataaa atttcataaa tcgtatcctg ttcattctca tatgcaggta
      121 caagacaaac attttcaacc agttattgac gtgttgtcta tcacatttct cttttctaca
      181 aggaaaatgg tcatcaaagc attctgtcct gtcttttatt ttctgaataa acctttccat
      241 tacattcttt aactcaacac catatacatg atgctttaat ctaagccatt tacaagcgtc
      301 attgtaccaa ggagctccat cagtatggat aggttttctg ccatatctag tcctaagttg
      361 tttaaaaaag tggtaacata tgaaaatggt tctttcttta gataaatgca tcatcaaaca
      421 cgaatttata tttggttcat atgctatcca taaccaataa tcttgtccat ctatttggat
      481 tagcgtttca tcaacaaata tttccttgac taaatgttta tttactttaa atctgtcagc
      541 ataattagca tatttctgaa cccatttcca gatcgataca tgtgtccttt tagttatgag
      601 atctaaacat tttgatgcac atcgataact cctggaatta aaatataggt acaatccata
      661 agatattaca gctgggtgtg ttctattgcg ttccatttgg tcaatgaaat gctaggatac
      721 atctagctat aggtattaca taatgcttaa gttaacagag cctacataca aacaccatat
      781 ttatataaat atactgatca acaattaaaa atcataatta ggatgatagt tccaattgct
      841 gatgacttaa gacgtattgc taaaggtgaa attttatctg ataattggag taggaaaatt
      901 tattctgttg atgcaagcag tcaatctata ataccatctg ttattgcttg cccacacgat
      961 gagcacgata tagaaaaaat atgccaatat agtatttcca aaggaatagc aataacagcg
     1021 agaggagcag gaactggtct tcttggccaa tctctctctg acggcatcgt cattgatttt
     1081 accaagtata tgaataaaat aattgaaata gaagatgact atattgtagt ccagccaggt
     1141 gtcgttaagg gtagattaga taatgaatta aaaaagaaag gaaaaatttt tccgcctgat
     1201 cctgcaagta gtaactattg tactattggg ggcatgattg caaacaattc aagcggagct
     1261 cattgtctag gttacggcag cacaatagat tttattgaag aaatcagtgt cgtttattcg
     1321 gatggtagtt tcggatatgt tagaagtaat aacgaatttg atgataagat aaccatgttc
     1381 ttacgattac tgtctcctta tgcaaactta attcatgaga gatatcccaa agtaaccaag
     1441 aattcctgtg gataccgcct agatgcggta ttaaatagcc aaaggcttgc ccctcaaaaa
     1501 ttatttgccg cctcagaagg aacattagga attgtaacct ccgcgaagtt gaaaactctt
     1561 gatgttccat tgtacagtca ttta
//
LOCUS       DATABJ010000076         4070 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_277689, whole genome shotgun sequence.
ACCESSION   DATABJ010000076 DATABJ010000000
VERSION     DATABJ010000076.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4070
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_277689"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(171..536)
                     /locus_tag="VHF44_01310"
     CDS             complement(171..536)
                     /locus_tag="VHF44_01310"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124218.1"
                     /translation="MVNNCAICDAKFANKECYFCQSKICSSCIASANITGRYTIKCIN
                     CDRNKINKISLLCVIRRNKIIIAILLGFWIFTVYPIPFLQMLGYNIPATAFQPVLITT
                     AIMVIPFIFMFIAWQRRGS"
     gene            complement(761..1162)
                     /gene="mce"
                     /locus_tag="VHF44_01315"
     CDS             complement(761..1162)
                     /gene="mce"
                     /locus_tag="VHF44_01315"
                     /EC_number="5.1.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA epimerase"
                     /protein_id="HEX2124219.1"
                     /translation="MRIDHIAIAVNSVDEALKDYQSALNIDRLEFEVVPNEKVKVAML
                     ELEDTRIELMEPTSPDSPIKKFLNERGEGIHHIAITADDIEKDVAKASAKGMKMLGGL
                     RSGSYGRRITFIHPKSLHGVLTELCEAQQKE"
     gene            complement(1639..3225)
                     /locus_tag="VHF44_01320"
     CDS             complement(1639..3225)
                     /locus_tag="VHF44_01320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016866 - intramolecular transferase
                     activity [Evidence IEA];
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methylmalonyl-CoA mutase family protein"
                     /protein_id="HEX2124220.1"
                     /translation="MPVEPIKTDSGIPVKRVYNKKDLSKFDLLEEEPGRFPYTRGLYP
                     NMYRERLWTMRQYSGFGSAEETNNRFKFLLDRGQTGLSLAFDLPTQTGRDSDDPQSEG
                     EVGRTGVAISSIKDMMTAFQNIPLDKVSTSMTINATASTLLSLYISIAESQGASPVDL
                     RGTTQNDILKEYIARNTYIYPPKPSIRLIGDMIQYCSKNVPQWYPISISGYHMREAGS
                     NAIQELAFTFANAIEYIETCVERGLRIDDFAPRLSFFFCCTMEFFEEIAKFRAARRIY
                     AKIMRDKFHAKNAKSWHLRFHVQTSGESLTAQQVDNNIVRVTTEALAAVLGGCQSLHT
                     NSRDEALALPTEESVKIALRTQQIISTETGVVKTVDPMSGSYYVEYLTNRIEEEVDKY
                     LKKISRIGGALAAVEKGYFQDEIRKNAYQLKKDIDEKKRIIVGVNKFQDQQGIEPNLN
                     IMDTEIERRQVARLKDLKSSRDKIKVDHAISALKKAAENQDENLMPHIINAVKSHVTL
                     GEISNTFGQIFGRYEPKVSF"
     gene            complement(3236..>4070)
                     /gene="meaB"
                     /locus_tag="VHF44_01325"
     CDS             complement(3236..>4070)
                     /gene="meaB"
                     /locus_tag="VHF44_01325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016772 - transferase activity,
                     transferring phosphorus-containing groups [Evidence IEA];
                     GO_process: GO:0015819 - lysine transport [Evidence IEA];
                     GO_process: GO:0015822 - ornithine transport [Evidence
                     IEA];
                     GO_process: GO:1903826 - L-arginine transmembrane
                     transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="methylmalonyl Co-A mutase-associated GTPase
                     MeaB"
                     /protein_id="HEX2124221.1"
                     /translation="KIILKQIFNKTGNAKTLGFTGPGGAGKSSLIGKLVPELQAMGYK
                     MAILAVDPTSPITGGAILGDRVRMQAVLEDNTLFMRSIASRGAMGGISHSLRNVIRVL
                     DAAGYDLIVIESVGAGQLEIEISKVVNMTAVVFTPNTGDNVQAIKAGLSEIGDLYIIN
                     KGDLAGATSLFHSILDLIGNTERKPVVIKASAKTGTGIKELAHIIDKLLKAGTVHYKE
                     KEKKMIESELRDMVLNMIDEKVSYMLISNKKYYDFVEKLLSKKVDPYYAAEQLADEIL
                     R"
BASE COUNT         1251 a          791 c          637 g         1391 t
ORIGIN      
        1 gttggcttgc tgaaagaaaa taaaaaaaca aaagacattg gaggagaact cagtacacaa
       61 gagttcacaa atctagttaa atattattta tattaaatct cgatattcta atgcgttgtt
      121 aaaccagtat ggaagaaact gattttaatt atttctattc atctacaaaa ttaagaacct
      181 ctcctctgcc atgcaataaa catgaaaata aatggaatga ccatgatggc agttgtaata
      241 agaacaggtt gaaatgcagt tgcaggaata ttataaccaa gcatttgtaa aaaaggaatt
      301 ggataaacag taaagatcca gaatcctaga agaatggcta tgataatctt atttcttcta
      361 attacacaaa gaagactgat tttatttatc ttatttctat cacagttaat acattttata
      421 gtatatcttc ctgttatatt tgctgacgct atacaggaag agcatatttt actttgacaa
      481 aaataacatt ccttatttgc aaattttgca tcacaaatag cacaattatt aaccattctc
      541 ttgctgtata gtatatacaa atattgaata ttaattatcc tatacaaata taatatatta
      601 cattaaggtg acaaaagata aggataacaa cgcgtttagt actttattat caggagaaca
      661 tagatttatc tgtaaataaa ccactgtctt attgttcaga ttcaatttag ttaaaaaata
      721 gtaaattgtt atcctaaatg gtgcaaaatc atatagatat tcattctttt tgttgtgctt
      781 cacataactc ggtcaataca ccatgcaaag actttggatg gatgaaggta atcctcctgc
      841 cgtaggaacc agaacgtaat ccgcctaaca ttttcattcc ttttgctgaa gcttttgcaa
      901 catctttttc gatatcgtca gcagtgatgg ctatatggtg tataccttcg ccccgttcat
      961 tgagaaattt ttttatagga ctatcaggag aagtaggctc catgagctct attctcgtat
     1021 cttccagctc aagcatagca accttcactt tttcatttgg tacaacttca aattcaagtc
     1081 gatctatatt taaagcactt tgataatctt tcaatgcttc atcgacactg ttaacagcta
     1141 tcgcaatatg gtctattctc atttcccttc accataaaat tatacgtcaa aacacaacgt
     1201 tttcttttgc aatttagaga tataaaaata ttacatttat aattagacaa gtagagaaca
     1261 gctcagtaca aaagttagcg agagaagaaa aaatcagaac tgtttaagta aaaatatacc
     1321 tgtttgagaa tatagatcct caagatatag gaaggctatt gttttttata ggtgatatca
     1381 cctgttctga atcaaatttt catcttttca tgaatatcta taaattaata gacattacaa
     1441 caaagacaat cgcgcgacaa gatacgacgc aatctcaaag cattatttta tatgcggagc
     1501 gatgttagca tctgataatg cattgatcta acgtatcttc ttatcaagaa gatacttaaa
     1561 gtacatgtta aatacatagc cactttcaga ctttgtattt attcgtgatg agaagctgat
     1621 tgcataaaat gatgtaattt aaaatgacac cttaggttca tatcttccga atatctgccc
     1681 aaatgtatta cttatctctc caagagtaac atgactcttt accgcgttaa taatatgtgg
     1741 catcaaattc tcatcctggt tttctgcggc ctttttcaat gctgaaatag catggtcaac
     1801 ctttatcttg tctctagaac ttttgaggtc ctttaaccta gcgacttgtc ttctttcgat
     1861 ttctgtatcc ataatattta gatttggttc aataccttgt tggtcttgaa atttgtttac
     1921 tcctacaata attctctttt tttcatcgat atcctttttt aattggtaag catttttgcg
     1981 aatctcgtct tgaaaatagc ctttttccac agctgctagc gctccgccaa tacgactgat
     2041 tttcttcaag tatttatcaa cttcttcttc tatcctattt gtcaaatatt caacatagta
     2101 agaaccgctc atcggatcta ctgtcttgac aacgccagtt tctgttgaga tgatttgttg
     2161 agttcgaagt gcaatcttga cagattcttc tgtaggtaag gctaatgcct catcccttga
     2221 attagtatgt aaagattgac atccacccaa gactgcagcg agtgcctcgg ttgtaacccg
     2281 aacaatgtta ttatcaactt gctgagcagt taatgattca ccactagtct gaacatgaaa
     2341 acgcaaatgc catgattttg catttttggc atggaacttg tccctcataa ttttagcata
     2401 gatacgcctt gcggctctaa atttagctat ttcttcaaag aactccatcg tacaacagaa
     2461 gaagaatgac aatcgcgggg caaaatcatc tattcgcaat cctctttcaa cgcacgtttc
     2521 aatatactca atagcgttgg caaaagtaaa tgctaattct tggatagcat tcgaccctgc
     2581 ttcccgcata tgataaccag atatactaat aggataccat tgtggaacat tcttagaaca
     2641 gtactgtatc atatctccaa taagtcttat agaaggcttt gggggataaa tataggtatt
     2701 tctggcgata tattctttta gtatatcatt ttgagtcgta cctctaagat caacaggcga
     2761 cgctccctgt gattctgcaa tactaatata aagtgaaaga agtgttgacg cagtcgcatt
     2821 aattgtcata gaagtactaa ctttatcaag aggtatgttt tgaaaagccg tcatcatatc
     2881 cttaattgaa ctgatagcca caccagttct tcccacttca ccttcggatt gaggatcgtc
     2941 tgaatctctt ccagtctgag taggcaagtc aaaggccaag gacaagccag tttgtccgcg
     3001 atctaataag aatttgaatc tattgtttgt ctcttctgca ctcccaaacc cactatattg
     3061 tcgcattgtc cataaacgtt cgcgatacat gtttggataa agtccacgcg tatagggaaa
     3121 tcttccgggt tcctcttcta atagatcgaa tttggataag tctttcttat tataaaccct
     3181 ttttacaggt attcctgaat ctgttttaat tggttctacg ggcataattt gatattcacc
     3241 tcaatatctc atctgctaat tgctctgcag cataatacgg atcaactttt ttgcttaata
     3301 atttttcaac gaaatcgtaa tattttttat tcgagatcaa catatatgaa actttttcat
     3361 cgatcatatt taaaaccata tctcttagtt ctgattcaat catttttttc tctttctctt
     3421 tataatgcac tgttccagcc tttagcaatt tatcgataat atgtgccaat tcctttattc
     3481 ctgttccagt ctttgctgaa gcttttatta cgactggttt tctctctgtg tttcctatta
     3541 gatctaaaat ggagtggaat aaggaagttg cgccagctaa atctccttta ttaataatat
     3601 agagatcgcc tatttctgat aagcctgctt ttattgcctg aacattatcg cctgtattag
     3661 gtgtaaatac aacagctgtc atatttacaa ccttagagat ttctatttct agctgtcctg
     3721 ctccaacact ttctataact ataaggtcgt acccagctgc atccaacact ctaatcacat
     3781 ttcgaagaga gtgtgaaatt cctcccatag caccccttga tgctatactg cgcataaaga
     3841 gagtattatc ctccagaaca gcctgcatcc tgactctgtc tcctaagata gctccacctg
     3901 taataggact agtaggatca actgcgagta tagccatttt atatcccata gcctgcaatt
     3961 ctgggactaa ttttccgata agtgaacttt tacccgctcc tccaggaccc gtaaagccca
     4021 gtgttttagc attgccggtt ttgttgaata tttgttttaa aataattttc
//
LOCUS       DATABJ010000077         3612 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2012981, whole genome shotgun sequence.
ACCESSION   DATABJ010000077 DATABJ010000000
VERSION     DATABJ010000077.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3612)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3612)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3612
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2012981"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..300)
                     /locus_tag="VHF44_01330"
     CDS             complement(<1..300)
                     /locus_tag="VHF44_01330"
                     /inference="COORDINATES: protein motif:HMM:NF012444.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124222.1"
                     /translation="MSRFAQSRFNLKLLADNSYRAIEEGAYEAKDYDFKSHESISMKK
                     AIFSCSHAPIITEIKFASPSKGQIIAQKEIDFIQVAINMISSGSIGLSVLTQPYLF"
     gene            533..1705
                     /locus_tag="VHF44_01335"
     CDS             533..1705
                     /locus_tag="VHF44_01335"
                     /inference="COORDINATES: protein motif:HMM:TIGR02928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2124223.1"
                     /translation="MSESEIFRDKSKLSPRYIPNELPHREKQIEQINHIFRASYSNPS
                     KFPLTVLQIVGPAGIGKTSTVLKFSKLLMEDFARNRLTLKTAYINLKLQGGNKYAIYR
                     FLLEKVAPELPSQGLSAEEMLRYMLRYLYENNIYSLVILDEIDYLIKISKDTGIIYDL
                     TRLNEFDPDAPCNVKGVIFIARSTDFYHKLDQAELSTLGRVPMEFPIYSIKQVSDILV
                     NRCTEAFNANAIGSNIIDEVAKITVSPTNNGDVRYALDLLLYAGNLAEVQGTGRITQD
                     QIRKVHGQIHLSITTEEIEELPKNQIFTLMAVIRALRARKKQYVELKEIRHRASELSE
                     EFKLKKLDVEDYLNDLEARRIIEIRSLKEIGMHVTSLNELEPILQKQIKRDNINGS"
     gene            1695..1997
                     /locus_tag="VHF44_01340"
     CDS             1695..1997
                     /locus_tag="VHF44_01340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124224.1"
                     /translation="MDLENKITSKEIVETGLGSIGKVKIIKALAEQEKMVTTYTLQKK
                     THLKREDIKRNLNDLIKIGWVKEIRLANLMYSLNLEDHYIISLITFFKEVGYIGFL"
     gene            complement(2175..2498)
                     /locus_tag="VHF44_01345"
     CDS             complement(2175..2498)
                     /locus_tag="VHF44_01345"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124225.1"
                     /translation="MTINNFALACAIDGSPPYFTYHNEIMLIIQSKNHAEHKTSDFEY
                     IEPFIEALISHESIHVVIKKLEGADISDSLDDIELLVERNGTRFLVTLNNILFAKDMS
                     GIVLP"
     gene            complement(2974..>3612)
                     /locus_tag="VHF44_01350"
     CDS             complement(2974..>3612)
                     /locus_tag="VHF44_01350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008705 - methionine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009086 - methionine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="vitamin B12 dependent-methionine synthase
                     activation domain-containing protein"
                     /protein_id="HEX2124226.1"
                     /translation="KSLFVLSWGIRGKGAEGLSQEAERLFEEWKIRVLQEKLFSPEIV
                     YGYFRCHNKDGKLVVDLPQSKGEVVFDFPRSSKQKHLCLTDFFGENDIVAFQAVTVGN
                     RVTEIIDMWNQDNRYTDAYYLHGLAVETAEALADWINLKIKNELNIGIKRGLRYSWGY
                     PSCPDISQHHLVWKLLDPTKSGMRLTESGQIIPDQSTAAIVVHHPEAEYFVL"
BASE COUNT         1269 a          597 c          597 g         1149 t
ORIGIN      
        1 aaataaatat ggttgtgtca gaactgaaag gccaatagaa ccggatgata tcatattaat
       61 cgctacttgt atgaaatcga tttctttttg tgcgataatt tgacctttag aaggagatgc
      121 aaatttaatt tctgttataa ttggagcatg agagcatgag aaaatggcct tcttcatact
      181 tatcgattcg tggctcttga aatcgtaatc tttagcctcg taggcgcctt cttctatggc
      241 tctataggaa ttatcagcaa gtaattttaa attaaatctt gactgcgcaa atctgctcat
      301 ctacaaggct ttagagaaca ataatatata tccatgtaat cgtatattcc ttggtaatat
      361 tttatatttc tttatatata tatatatata tatatatata ttatttaatt gtcgtagagt
      421 ctctcaaact agactacata gagatcagca ttctaataat gatcagattt ctaaacgaga
      481 atttcgctag gatacttaat ataatatcaa tgataaatga ttcacttcaa caatgtcaga
      541 aagcgaaata ttccgcgata aatcaaaatt gtcaccacga tatataccaa atgagctgcc
      601 tcaccgggaa aaacagattg agcaaattaa tcatattttc agagcttctt attcgaatcc
      661 aagtaagttc ccattaacag tattgcaaat cgttggccct gcaggaatag gtaaaacttc
      721 tactgttctt aaattttcta aacttttgat ggaagatttt gcacgtaaca gactaactct
      781 gaaaacggca tatatcaatt taaaattaca aggaggtaat aaatatgcaa tctataggtt
      841 cttgttagaa aaggttgcac cagagttgcc atcacaagga ctcagtgcag aagagatgtt
      901 aagatacatg ttacgttatt tgtatgaaaa taatatctat tcacttgtca tccttgatga
      961 gatcgattat ctaattaaga tcagcaaaga tacaggtata atctacgact tgactcgtct
     1021 taatgaattt gatcctgacg caccatgcaa cgtaaaggga gtaatattta ttgcaagaag
     1081 tacagacttc tatcacaaac tcgatcaagc ggagttgagt actttaggaa gagttccaat
     1141 ggaatttccg atatattcta ttaagcaggt tagtgatata ttggtaaata gatgtacaga
     1201 agcatttaat gcaaacgcta tcggatcaaa tataatagat gaagtggcaa aaatcactgt
     1261 ttcacctacc aataatggtg atgtaaggta cgcccttgat cttctgctat atgcgggaaa
     1321 tctagctgaa gtacagggaa caggcaggat aactcaagat caaatacgaa aggttcatgg
     1381 ccagatccat ctttctataa ctactgagga gatcgaagaa ttaccaaaga accagatatt
     1441 cactctcatg gctgtgataa gggcattgcg cgcaagaaag aaacaatatg tagaacttaa
     1501 agaaattaga caccgagcgt cagaattatc agaagagttt aaattaaaaa aacttgatgt
     1561 cgaagattac ctcaatgatt tagaagcaag aagaataatt gaaattcgat cattaaagga
     1621 aattggcatg catgtgactt ctctcaatga acttgagcca atacttcaaa aacaaatcaa
     1681 gcgtgataat attaatggat cttgagaata aaataactag taaggagata gtagagacag
     1741 gtcttggaag tattggcaaa gtcaaaataa tcaaggcttt agcagaacag gagaaaatgg
     1801 ttactactta tactttgcaa aagaagactc atttaaagag agaggatatt aaacgcaatt
     1861 taaacgattt aatcaaaatt ggctgggtca aagaaatcag acttgctaat ctcatgtata
     1921 gtttgaattt agaagatcac tatataattt ccttaattac atttttcaaa gaggtaggat
     1981 acatcggttt cttataaacg caaggtacga tatacaatta tctatccctg tttttgtcag
     2041 actatgtcgt ctaaaatctt ttctgacttt tatttattct gatgtaccac ttgaaaactg
     2101 tcattacact aacttctgcc aatattgcat cgctacacaa agattgacta tatccagaga
     2161 atttaacctg acatctatgg cagtacgatg ccagacatat cttttgcaaa aaggatattg
     2221 ttcaaagtga ccagaaatct cgttccgtta cgttcgacaa gtaattcgat atcatcaaga
     2281 gagtctgaga tatctgctcc ttctaatttt tttattacga catgaatgga ttcgtgagaa
     2341 attaatgctt cgataaacgg ttcaatatat tcgaaatcac tagtcttatg ctcagcatga
     2401 tttttggatt gtataattaa cattatttca ttatgatatg taaagtatgg gggagaccca
     2461 tcaattgcac aagctaaagc aaaattattt attgtcatac ctatcaatat aacattattt
     2521 attacaagat tttatatact catacatcta gaatgaaaac agaaatcaca taattatgaa
     2581 ggatattgta taattataag aaagagatga cttcatcatc atgttatata tagagacggt
     2641 ttttatgtgc acaatataat gtaatttaag agaatattta cccatagccc aaacctctaa
     2701 aacattgaaa tatctactat tgattttgtt gtagattgat ttggggatct agatgatctc
     2761 aaatcaaaaa agacatggta ttcttattta ataaattgat cccaattaga ttcatacgca
     2821 atatttgtaa cagctactaa ctttgcaaaa tccattgagc aaataaaata acaattaaac
     2881 ataacataaa tgataaaggt gttattgatt tgactttgtt tgtttgagca taaatcaaag
     2941 agaataataa taataattta gatatccaat atattaaagt acgaaatatt ctgcttcggg
     3001 atgatgtacc actatggctg cagttgattg atcaggtatt atttgtccag attctgttaa
     3061 tctcatgcca gattttgttg gatctagtaa tttccagacc aagtgatgct gagaaatatc
     3121 aggacaacta ggataacccc aactatacct aagcccacgt tttatgccta tattaagttc
     3181 attctttatt tttagattga tccaatctgc caatgcttcg gcagtctcga ctgctaaacc
     3241 atgtaaataa tatgcatcag tatatctatt atcctgattc cacatatcaa taatttctgt
     3301 taccctatta cctactgtga ctgcctgaaa agcgacgata tcattttctc caaaaaaatc
     3361 agtcaggcag agatgttttt gtttagagga tctaggaaaa tcaaaaacca cctcgccttt
     3421 actttggggt agatctacta caagttttcc gtctttatta tgacatctaa aataaccata
     3481 gactatctct ggggaaaaga gcttttcttg tagtaccctt attttccatt cttcaaacaa
     3541 cctttcagct tcctgactta aaccttcagc gccttttccg cgaattcccc aagaaagaac
     3601 aaagagagat tt
//
LOCUS       DATABJ010000078         4911 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1151132, whole genome shotgun sequence.
ACCESSION   DATABJ010000078 DATABJ010000000
VERSION     DATABJ010000078.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4911)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4911)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4911
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1151132"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            58..363
                     /locus_tag="VHF44_01355"
     CDS             58..363
                     /locus_tag="VHF44_01355"
                     /inference="COORDINATES: protein motif:HMM:NF013202.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124227.1"
                     /translation="MIAHRILSDKIPKLTVDQFVQEATMGKMSADLLEEAKKIASIRH
                     IGIKKTKLISTSESRAIQEAKAIESTTATTTSSSEASTADESDEEVEDYQQTTEATQ"
     gene            410..859
                     /locus_tag="VHF44_01360"
     CDS             410..859
                     /locus_tag="VHF44_01360"
                     /inference="COORDINATES: protein motif:HMM:NF013994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding domain-containing protein"
                     /protein_id="HEX2124228.1"
                     /translation="MTSEDNIRFSTAEISIIVHATENQDKILQSINDVLYISPDRFSS
                     TSSEGHWGNKILLLSAVIGSTEANSLIARILSGLSKIDRHSLSDFFDNYIDEKGNLYI
                     RLDKQRICQGRTSLSDNDSIRIRLRPVRRYKPTKILENYRRLLISSE"
     gene            901..1404
                     /locus_tag="VHF44_01365"
     CDS             901..1404
                     /locus_tag="VHF44_01365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124229.1"
                     /translation="MAQISEIDVIGTDYAGEISIDNIIYRINRKPAELTSYPYLVVCK
                     KIEEISVSTTDILVVDDFKRIEDSLKRRVRKRIGLEVTVSRARKQDGPNIGKWFKQIR
                     NLYKFCKLNDYQFILSSGANSELEMVSGRSFDSILKICDIKPEQYWRDLAEWIETKYQ
                     RMVFVNA"
     gene            1397..1729
                     /locus_tag="VHF44_01370"
     CDS             1397..1729
                     /locus_tag="VHF44_01370"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124230.1"
                     /translation="MLKRRSKRRYLAILHSVHPHDNIREELSILNSITKRNSELFGHI
                     STELSYIRLIRSEQKNIIIISCLLQHIDNILSTIALIDPPLITIVISGTLKKLRRHLQ
                     KILDNAYL"
     gene            2161..2988
                     /locus_tag="VHF44_01375"
     CDS             2161..2988
                     /locus_tag="VHF44_01375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX2124231.1"
                     /translation="MIFQVTLGCSFNKCSFCNMYRTKEYVERPWEEIKTEIDLAANAY
                     PDTRRVFLADGDALNLSTNRLIQILKYLRSKFANIERISCYAMPKNLLQKKDDELDRL
                     RSAGLGMFYVGVETGNDILLKKVTKGATSKGIIQSCQRAKRHGYILSCMIILGIGGKT
                     YTHEHIVDTARVINEIAPDYLGALTLHLEEGVFDEFMTKFNEPFIPLEDMEILDELER
                     LISNINVSAPVIFRANHASNIYSLGGTFPQDKENLLSLVAGLKNHPEMLKPKILRRF"
     gene            complement(3859..>4911)
                     /gene="serS"
                     /locus_tag="VHF44_01380"
     CDS             complement(3859..>4911)
                     /gene="serS"
                     /locus_tag="VHF44_01380"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004828 - serine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006434 - seryl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEX2124232.1"
                     /translation="EMKDIGNRIMSLEKEKSIVESQFNLLMRCLPNIIDQSVPIGDNE
                     NDNVILQHHGTIKNLDFKPKDHVEIATSLDLVDLERAAKISGARFYFLKKELVTMNYA
                     LILFALDFLSDKGYTLTQPPYMIRRNAIEGSIILEDFEQVIYKINGEDLYMIGTSEHA
                     LASMHMDEILNGKQLPIKYAGISPCFRKEAGAHGKDMKGIFRVHQFEKVEQFIYSRPE
                     DSCKEHEKMLSLTEEFYNKIGIPYRTVLLCSADLGKISAKTYDIEAWMPGQSAYREIV
                     SCSNCTDYQARRLGIRFKDKTNEETRLVHTLNSTLVATERTMVSIMENYQTSNGEVEI
                     PDILQKYMGDIKKIKI"
BASE COUNT         1592 a          822 c          855 g         1642 t
ORIGIN      
        1 tcaataattg catttagtca aagaaggcta aattcttcaa aaaaacatta aattagaatg
       61 atagcacata ggatactctc agataaaatc ccaaaattga ctgttgacca gtttgtgcag
      121 gaagctacta tgggaaagat gagtgccgat cttcttgaag aagcaaagaa aattgcgtca
      181 atacgacaca taggcattaa aaaaacaaaa ttgatatcaa cgtcagaatc tagagctatt
      241 caggaagcaa aggcaattga atcaacaaca gcaacaacaa catcatcatc cgaagcttct
      301 actgctgatg aatctgatga ggaagtggag gactatcagc agacgacaga agcgacgcaa
      361 taacttttaa tcaatatttg accaagtctt agactattgg tattagttta tgacttcaga
      421 agataatatt agattttcta ctgcggaaat aagtatcatt gttcatgcta cagaaaatca
      481 agataagatt ttgcaatcca ttaacgatgt actctatata tcgcctgata gattttcctc
      541 tacttcttcc gagggtcatt ggggaaacaa aattttatta ctctctgctg ttataggaag
      601 tactgaggct aactctctta tagcgaggat tttatctgga ttaagcaaaa ttgaccgcca
      661 ttctctttcg gatttttttg ataattacat agacgaaaaa ggaaatctat acattcgttt
      721 agataaacag agaatctgtc aaggaagaac atctctttct gataatgatt ctattagaat
      781 tcgattgcga ccggtaagaa gatataaacc taccaaaata ttagaaaatt ataggaggct
      841 tttgatttca agcgaataga tctttgtatt aattttaaag agtatgacaa aattgctaaa
      901 atggctcaaa tctctgaaat tgatgttata ggtaccgatt atgctggtga aatatcaatt
      961 gataatatta tttatcgaat aaacagaaaa ccagcagaat taacgagtta tccgtatcta
     1021 gttgtttgca aaaaaattga agagatttca gtttctacta cagatatttt ggtagttgat
     1081 gattttaaga gaatagaaga cagtttaaaa aggagagtga gaaagagaat tggactggag
     1141 gttactgtat cccgtgctcg caagcaggat ggacctaaca taggaaaatg gtttaagcaa
     1201 atacgaaatc tgtacaaatt ttgcaaattg aatgactatc agtttatttt atctagtggt
     1261 gcaaattcag agttggaaat ggtttcgggt cgctctttcg actctatatt aaagatttgt
     1321 gatataaaac cagaacaata ttggcgggat ctcgcagagt ggatagagac aaaatatcaa
     1381 aggatggtgt ttgtgaatgc ttaaacgtag gtcaaaacgt cgatatttgg caatattgca
     1441 tagtgtccat ccgcatgata atattagaga agagcttagc atacttaatt ctatcacaaa
     1501 aagaaattcc gaacttttcg gtcatatttc aactgagtta tcttatatta gattgattcg
     1561 atcagaacaa aaaaatataa ttatcataag ttgtcttcta caacatattg ataatatttt
     1621 gtcaacaata gctttaatcg atccgccact tatcacgatt gttatttcag gtacgttaaa
     1681 gaagctacga agacatcttc aaaaaatact tgacaatgcc tatctttaat tactatcttt
     1741 aattatatta tcatttatct acaatagaca aagcgaatgg ctgttgagta agggaaatct
     1801 caacaactgt aatattctta tccttcttga gaatggcttg tcctgtcaat aggaaaaatg
     1861 tttaaggcac tctatgatcg ggcaaattcc taagagatga tgttctcaaa tacactttaa
     1921 tggtggttct tatatctata tacggggatg aggtaagata tcgctgctcc agactgagtc
     1981 aaagcatgaa gatctcgcga cgaaccgacc caaattcttt agggataatt tatcctaatc
     2041 attacgtcag tcatctaaat agtatgagtt aaatgtaata tgttatctta acttagtata
     2101 tttaaaatgg atattctgta tgaccatcct ctttatagac caccttcaga ggctaactca
     2161 atgatatttc aggttacatt aggttgctcc tttaataaat gctccttttg taacatgtat
     2221 cgtacaaagg aatatgtcga aagaccgtgg gaagagataa aaacagaaat tgatctagcc
     2281 gcaaatgcat atcctgatac tcgaagggtg tttcttgcag atggagatgc gctaaaccta
     2341 tccaccaata gattgattca aattctgaaa tatttacgga gcaagtttgc aaatatagaa
     2401 agaatatcat gctatgcaat gccaaagaat ctattgcaga agaaggatga tgaattagac
     2461 agacttagat ctgctggatt agggatgttc tatgtaggag ttgagaccgg aaatgatatt
     2521 cttttaaaga aggtgacaaa aggcgcgaca agcaaaggaa ttattcagag ctgtcaacgg
     2581 gcgaaaagac acggctatat tttatcctgc atgataattc taggcatagg tggaaaaacc
     2641 tatactcatg agcatatagt tgatactgct agagtaataa atgaaattgc ccctgattat
     2701 ctcggagcat taacattaca tcttgaagag ggagtttttg acgagtttat gaccaagttt
     2761 aacgagccgt ttatcccatt agaggacatg gagatattgg acgaacttga aagattaata
     2821 tcaaatatca atgtatctgc accagtaata tttagggcta atcatgcatc gaatatttat
     2881 tcgttgggtg gtactttccc tcaagataag gagaatcttc tctctttagt ggcgggactt
     2941 aagaaccatc cggaaatgtt aaaacccaag atcctgagaa ggttctgact tgtaattctc
     3001 aattttattt tcattcaaaa catttctgct ataagatttc tattttggac atactatagt
     3061 ctatatcatt aagtaactta ttggcgctac cgcaatgcta taatgtgaaa gattcaattt
     3121 ttttaatatt atccttatat taaagtcatt ataactgaat cttaagagat atgttgtatt
     3181 gaatttagag ccatctgatt atgtcttttt tcatctacct aaacctttta ggtttgttaa
     3241 ggtaattgga aaccgtctgg gatattcttt gaacgcagtt tcctctccgt ctgttaattg
     3301 ttgagacttg ggatttaagg atccgcaagc agtacctcca tgctgctcgc tgctctctta
     3361 cctcatttct tttgctattt cattacaatt tagtttaaca gactcttcat acgctatatt
     3421 gctaaaggta gcgtgtactt tttagatgaa aataattatt gtcgaattga attgtaatat
     3481 gaattagctg catgacttaa ctttaaaatt tcatatggtc ttgctcgata tagcgtgtta
     3541 tcatcttctg ctgttgatta gatatattag taactacttt tggctcgctt tttgttatta
     3601 ttgtagctag tttatatatc tctctctatc tttgtgtgct tctaacctat agacaagtct
     3661 ttgctactat tatcaaatgg attttttaaa cattagccga gttttgttgt atcattgata
     3721 tttctcagct ttaataatct cttgaattat attatttata tgctaaatat gtaaattgac
     3781 aaacagaaag tttggcattg acataaaagg aaatattatt attattagta taatgactat
     3841 tattataatc tcaaaatatt atatcttgat tttcttaatg tctcccatgt atttttgaag
     3901 aatatctgga atttcaactt ctccatttga ggtctggtag ttttccataa tactcaccat
     3961 agttctctca gtcgctacaa gtgtgctatt tagagtatga actaatcttg tttcttcatt
     4021 tgtcttgtct ttaaatctta tgccaagcct acgagcttgg taatccgtac agtttgaaca
     4081 tgaaactatc tctctataag cactttgtcc tggcatccac gcctctatat catatgtttt
     4141 agctgaaatc ttgcccaggt ctgctgaaca tagaagcacc gtccggtaag gaatgccaat
     4201 cttattataa aactcttcag ttaaagataa catcttctcg tgttctttac atgaatcttc
     4261 tggacgagag tatatgaatt gttctacttt ttcgaactga tgcactctga aaattccttt
     4321 catatctttg ccatgagcac cagcttcttt tctaaaacaa ggactaatac ccgcatattt
     4381 gatcggtagc tgcttaccat ttaaaatttc atccatatgc attgacgcca gtgcatgctc
     4441 agaagttcca atcatataca ggtcctctcc attaatcttg taaatcactt gttcaaaatc
     4501 ttccagtatt atagaccctt cgatagcatt tcttctaatc atatatggag gctgagtgag
     4561 tgtgtaccct ttatcagata aaaaatctag tgcaaagaga atcaaggcat aattcatagt
     4621 taccaattct ttttttaaaa agtaaaatct cgcacctgat atttttgcgg ctctctccag
     4681 atcgaccaga tccagagaag ttgcaatttc aacatgatcc ttaggcttga agtccaaatt
     4741 cttgattgtt ccatgatgct gtaagatgac attgtcattt tcattatctc caattggaac
     4801 agattgatca ataatattag gaagacatcg catgagaagg ttaaactgcg attcgactat
     4861 gctcttttct ttctcaagac tcataattct gtttcctata tctttcattt c
//
LOCUS       DATABJ010000079         4130 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_499167, whole genome shotgun sequence.
ACCESSION   DATABJ010000079 DATABJ010000000
VERSION     DATABJ010000079.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4130)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4130)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4130
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_499167"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            100..537
                     /locus_tag="VHF44_01385"
     CDS             100..537
                     /locus_tag="VHF44_01385"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124233.1"
                     /translation="MSKDSQFNSTQNLPQDATKLIKLPKVAARYIEIEQFAGSDMHTG
                     YFCYNCTYFMKPHHCYIVTDEGLDIKGSSSGMIAPHGICSLWMPNEKEIRPSTAGVSQ
                     AEGKKSDESNINVSATFSCDTCGMKFQAREELKQHTIQNHTGK"
     gene            complement(802..1155)
                     /locus_tag="VHF44_01390"
     CDS             complement(802..1155)
                     /locus_tag="VHF44_01390"
                     /inference="COORDINATES: protein motif:HMM:NF012575.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEX2124234.1"
                     /translation="MLYRVCSSNDLKDNSMIVFNINKDDILVGKRNGRLFSCNNSCPH
                     RGASLSKGDFNGDNIVCYMHGYEYNVFTGKLEHMRSWKKDNTWMEQSFEWRKSDDLTL
                     YPIMEKDGSVYVELT"
     gene            complement(1211..1807)
                     /gene="dps"
                     /locus_tag="VHF44_01395"
     CDS             complement(1211..1807)
                     /gene="dps"
                     /locus_tag="VHF44_01395"
                     /EC_number="1.16.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004322 - ferroxidase activity [Evidence
                     IEA];
                     GO_function: GO:0008199 - ferric iron binding [Evidence
                     IEA];
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_process: GO:0006880 - intracellular sequestering of
                     iron ion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA protection during starvation protein"
                     /protein_id="HEX2124235.1"
                     /translation="MSASTKKESVPKIVALEVLEKNGINVEKLKELITKGVGAEFTTY
                     YYYTILRMHCTGLEGEGIKEIVEDARIEDRNHFEAMVPRLYELGGGLPRDIRKFADQA
                     GCPDAYLPDNWEDINSILKVLLEAEQCAIRSWGEVCDMTAGKDPRTYDIAQNIMQEEV
                     EHEAWFIELLSKRPSGHFRRSFVGQSPHTGSQGSLIHL"
     gene            complement(2277..3611)
                     /locus_tag="VHF44_01400"
     CDS             complement(2277..3611)
                     /locus_tag="VHF44_01400"
                     /inference="COORDINATES: protein motif:HMM:TIGR00148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016831 - carboxy-lyase activity [Evidence
                     IEA];
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="menaquinone biosynthesis decarboxylase"
                     /protein_id="HEX2124236.1"
                     /translation="MYAGNQPAVLFEDVEGYDMPVLGNAFGTLPRLQIALEINNFEEI
                     GGRIVDLTKMKMPAGMLNKLKMIPKLSEIAQYGPKSVESGPVMEVIETANVTLNSIPI
                     LKSFSGDAGRFITFGLTVTKHPETGIRNIGVYRIQVINDTKAIMHWQIHKRGAQHYEI
                     MKEQMKRIEVAIVIGADPATVFSAVAPVPEGMDKFLFAGITRKKGIKLVKCKNVDLEV
                     PANAEIVLEGYIDPNDIRIEGPFGDHTGYYTPPEPYPTFTLTGIMRRNKPIYLTTVVG
                     KPILEDAYIGKVIERSFLPLIQMFQPEVVDFSMPPAGWFQGLAVISIRKRYPGQARKV
                     MMGLWGMGQLSLTKIFAVVDHDVNVHDMNEVIWAITTRADPKRDTMIIDNTPTDTLDP
                     ASPLVNLGSKMGIDATAKWKEEGYLREPQQLVRVDEQTKRTVDNNWKEYGLC"
BASE COUNT         1244 a          822 c          661 g         1403 t
ORIGIN      
        1 cttaggtgat tgggatttgg aaatgttgtt atggagaaaa tattcaaatc ttatttataa
       61 tttgtattct cagctctgaa atagaggata tagtgtagta tgtcaaaaga ctctcaattt
      121 aattctactc agaacctacc ccaagatgca acaaaactaa taaagttacc caaggttgct
      181 gcacgataca tagagataga acagtttgca ggctccgata tgcatactgg atatttctgc
      241 tataactgta catattttat gaagccacat cattgttata ttgtaacaga tgaaggatta
      301 gatataaaag gtagttcttc aggtatgatt gctccacatg gaatatgttc attatggatg
      361 ccaaatgaaa aagaaatacg acctagcacc gctggtgttt ctcaagccga gggtaaaaaa
      421 tcagacgaat caaacatcaa tgtttctgcg accttttcat gtgatacatg cggtatgaaa
      481 tttcaagccc gtgaagagct caaacagcac acaatacaga atcatacggg aaaatagaat
      541 aatccataat taacaacaac ataatattac atttctttca tcttcggata gagtcattag
      601 tatacgtcat catgcaatag gaagttagct tgaaaaaatg gaaatcagat aatgcgcttc
      661 aaacagttac tagatgcaca atttctttag ttgtttaaat ctgaatagaa tagagaatca
      721 gtattgtatg agtatgataa agcgactgtt tattaaaaaa ggattcttat ccaggtttta
      781 tgagacaccg tctcaattat cctatgtgag ctctacgtaa acagagccat ctttctccat
      841 tattggatat aaagtcaaat catctgactt tctccactcg aagctttgct ccatccaagt
      901 gttatctttt ttccacgacc tcatatgttc taactttccg gtaaacacat tgtattcata
      961 tccatgcata taacaaacaa tattatctcc attgaagtcg cctttcgaaa gagatgcgcc
     1021 tctatgtgga catgagttat tgcatgaaaa taatctccca tttctctttc ctacaagtat
     1081 atcatctttg ttaatattaa aaacaatcat agagttatcc tttagatcgt tgctactaca
     1141 aactcgataa agcatgaatc tatagacaga aaagaaaaag aaaaaacctt ttataaatta
     1201 tataattcca tcaaagatgg atgagactgc cttgtgatcc ggtatgcggg gattgaccta
     1261 caaaacttct tctaaagtgt cctgaaggtc ttttcgatag aagttcaatg aaccatgctt
     1321 catgctcaac ttcttcttgc ataatatttt gtgcaatgtc atatgttctg ggatcttttc
     1381 ctgccgtcat atcgcatact tctccccacg atctaattgc acactgttcg gcttctaaca
     1441 agacttttag tatcgagtta atatcttccc agttatctgg aagataggca tcaggacaac
     1501 cagcctggtc tgcaaatttc cttatatccc taggtaaacc gcctcccaat tcatagagtc
     1561 taggaaccat tgcttcgaaa tgatttctat cttcaattcg cgcatcctct actatctcct
     1621 taatgccttc accttctagc ccagtgcaat gcattcttag tatagtataa taatagtatg
     1681 ttgtgaattc tgcaccgact cctttagtaa ttaattcctt tagtttctcc acgttaattc
     1741 catttttctc aagaacttct agtgctacaa tttttggaac agattctttc tttgtactgg
     1801 cactcatagt tagatctaat agcaatcatt atttaaagtc ttactactat tctgaataca
     1861 aatcatctct ttattatcct tgcaaggctt ttaaagacag tcaatatcat agtataatat
     1921 ttattcatct ccaataatgc ggataacaaa aataaaactt cattccacac tgaaggcctt
     1981 taagaaaaat aggatggtaa caataaaggt acaataacac ggatttgcat aattttcttg
     2041 aagatataca aactaatttt agaggttttt catcatatct gtcagacact ttttttctaa
     2101 tgtattttat cagaaattct acttttcagg cacctctttt tattttatat ctgcgtgaat
     2161 atattctacg atgagcggct aatgccaaat acaataaatg gatttcctgc tggcaatgac
     2221 ttaaaatttg ctgttcttct gaagtaatca aatccgttaa ctattatgta tagaagttaa
     2281 catagcccat attctttcca attattgtca acagtcctct ttgtctgctc atcgactcta
     2341 accagttgct ggggttctct gagatatcct tcttctttcc attttgcagt tgcatctatc
     2401 cccatctttg aaccaaggtt aactaatgga gaagctggat ccaaagtatc agttggtgta
     2461 ttatcaatta tcatagtatc tcttttagga tccgctcttg ttgtaatagc ccatattact
     2521 tcattcatgt catgtacatt tacgtcgtga tccacaacgg caaatatctt ggtaagtgat
     2581 agctgaccca tcccccataa acccatcatg acttttcgtg cctgaccagg ataacgtttc
     2641 ctgattgaaa tcacagcaag accctggaac catcctgctg gaggcataga aaaatctact
     2701 acttctggct gaaacatttg aataagtggc aagaatgatc gctcgataac ttttcctata
     2761 tatgcatcct ctaaaatcgg cttaccaaca acagttgtca gataaattgg tttatttctt
     2821 cgcatgatgc cagtaagagt aaatgtagga tatggttcgg gaggtgtata atatcctgta
     2881 tgatcgccaa aaggaccttc tatacggatg tcgtttggat ctatgtaacc ttccaggaca
     2941 atttcggcat tagcaggaac ttccaagtcg acgttcttgc atttaacaag ttttattcct
     3001 ttcttcctcg ttatacctgc aaatagaaac ttatccatac cttctgggac tggagcgacc
     3061 gcactgaaaa ctgtggccgg atcggcgcct attactattg ctacttcgat gcgtttcatt
     3121 tgctccttca ttatttcgta gtgctgtgct ccgcgcttgt gaatttgcca atgcattatt
     3181 gcttttgtat catttataac ctgaattcta tacactccta tatttcgaat tcctgtttct
     3241 ggatgcttcg taactgttaa tccaaatgta ataaatctcc ctgcatcgcc ggaaaaagat
     3301 tttaagatag gtatcgaatt taaagttacg ttagctgttt ctatgacttc cataaccggt
     3361 cctgactcta cgctttttgg accatattgg gcgatctcag acagttttgg tatcatctta
     3421 agtttgttta gcattcctgc aggcattttc atttttgtaa ggtcgacaat tctgcctcct
     3481 atttcctcaa aattatttat ttctaatgca atttgtagtc gtggcagagt tccgaaagca
     3541 ttacctagca ctggcatgtc ataaccttcc acatcttcaa ataatactgc tggttgattg
     3601 ccagcataca ttagcctgcg cataatctct gcaatttcta aatgcgcgct tactcttttt
     3661 ttttattctc gccaactgtc cgcttttttc tagtacttca acatactcac ccaggctttc
     3721 gaatggcatg gcaaagatag ttaatcaacg ttagataagc cttgcctaaa agggattaag
     3781 atattcacac atatacttta acctagtatc tcaattcaaa catgatgcaa gccaaattaa
     3841 gtcatatata atttatttta gattctaata tagaatcctt gttggttgta tataatagtt
     3901 aaagcagacg ccctacatgt tatcatactt taagagtttt agatcataga tgatcttgtg
     3961 ataccagcag atttctctat tgtatatata gaagatctat acgaaaggcc atatcattga
     4021 ctttattgcg atctttttct aatctgtctc tagatgttca aacaatgtag tattatttat
     4081 atgagagttg atgtattata ctgtactttc taaaaaatgc aaacttcaat
//
LOCUS       DATABJ010000080         1598 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_283167, whole genome shotgun sequence.
ACCESSION   DATABJ010000080 DATABJ010000000
VERSION     DATABJ010000080.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1598)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1598)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1598
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_283167"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..735)
                     /locus_tag="VHF44_01405"
     CDS             complement(<1..735)
                     /locus_tag="VHF44_01405"
                     /inference="COORDINATES: protein motif:HMM:NF012795.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine-phosphate kinase"
                     /protein_id="HEX2124237.1"
                     /translation="MTKLNEKEIINLFISKLKPDNTITEFGKDDVAILSLKDAKTKTS
                     KNNIFCPISIILKCDMLVGNTDVPTGMKPWQIARKSIVSCVSDLSAKGIKPPYLSLIS
                     IGIPRRYSKNEIKDLIIGFQTASKEFGIKIVGGDTNESNELIIDCNMLGFSDINAAAR
                     IPRRSGAKPGDLVVVSGEFGYSSSGLKILIENAKSHGIFKKNAILSVVKPKPQQKFGI
                     ALAKYFSSSIDSSDGLATSLYELARQS"
     gene            complement(719..>1598)
                     /locus_tag="VHF44_01410"
     CDS             complement(719..>1598)
                     /locus_tag="VHF44_01410"
                     /inference="COORDINATES: protein motif:HMM:NF014879.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124238.1"
                     /translation="VNFVEKSTYNRTLKLGLDLGGGATCGYANHLFKKLGSKFYSIND
                     VHGVTSRGPDPTVDYLNELCMLVIANELDFGFAFDLDGDRLVVVNRMGEKLSSDATLL
                     ICIASAINLGMKKFVTSIDTSIAIEKFIKDHGGRFDFSKVGEANVVSKMLEVDAEAGG
                     EGSSAGFIMPKFNMCRDGFLASAIISSLDKKEIDEYLDFSSQYVQIRSKISADSSFHR
                     KVIEKLTDSLTAESSAVLTIDGIKAIVDDDSWILVRPSNTEHAIRISIESKKANIQSL
                     YKKTREKVQFTYDQIK"
BASE COUNT          493 a          304 c          238 g          563 t
ORIGIN      
        1 actctgacgt gctaattcat aaagagatgt agcaagacca tcactggaat ctatagaaga
       61 agaaaagtat tttgcaagag caatgccaaa tttttgttga ggttttggtt taactactga
      121 taggatagca ttttttttaa atatcccatg agattttgca ttctctataa ggattttcaa
      181 tccggatgat gaatagccaa attctccaga aacaacgacc aagtctccag gttttgcacc
      241 acttcttctt ggaattctgg ctgcagcatt aatatctgaa aatccaagca tattacaatc
      301 tattattaat tcattagatt cattagtatc cccgcctaca attttgattc caaattcttt
      361 agatgctgtt tgaaagccaa ttatgagatc tttaatttca tttttagagt atcttcttgg
      421 aattccgatg gaaattaagg atagatatgg tggtttaatg ccttttgctg ataagtcact
      481 aacacaagag acaatgcttt ttctagcaat ttgccaaggc ttcattcctg ttgggacatc
      541 agtattccca acaagcatat cacatttcaa tatgatactt ataggacaaa aaatattgtt
      601 cttactagtc tttgtctttg catcttttag agaaagtatt gcaacatcgt ctttcccaaa
      661 ttcagttatt gtattatccg gtttaagttt agatataaaa agattgataa tctctttttc
      721 atttaatttg gtcatatgta aattgaactt tttctcttgt cttcttgtac aaagattgta
      781 tatttgcctt tttagattct attgatattc tgatagcatg ttctgtattt gatggtctta
      841 caagtatcca cgaatcatca tctactatag ccttaatacc atcgatcgtc aaaactgcgg
      901 atgattcagc cgttaatgaa tcagttaatt tctcaataac ttttctgtgg aaagatgaat
      961 ctgcagatat ttttgatcta atttgaacat actgagaaga gaagtcaaga tattcatcta
     1021 tttctttctt atctaaggat gagatgatgg cacttgccaa aaatccatct ctacacatgt
     1081 tgaattttgg cataataaag ccggcgctac ttccttctcc tcctgcctca gcatcaactt
     1141 ctaacatttt gctaacaaca tttgcttcac caaccttgga aaaatcaaat cttccgccat
     1201 gatcctttat aaatttctct atggctatac tagtatctat actcgtaaca aattttttca
     1261 ttcctaaatt aattgcactg gcaatacaaa tcaaaagtgt ggcatcagag cttaattttt
     1321 cacccattct attaactacg acaagtctat ctccgtctaa atcaaatgca aatccaaagt
     1381 caagctcatt tgctatgacc aacatgcaca attcattaag ataatctaca gtaggatcag
     1441 gtcctctgga agttacgcca tgaacatcat ttatactata aaatttgctg ccaagttttt
     1501 tgaataagtg attagcatag ccacatgtgg ctccaccacc gagatcaagt ccgagcttta
     1561 atgttctatt atacgttgat ttctctacaa agttgaca
//
LOCUS       DATABJ010000081         1601 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_59300, whole genome shotgun sequence.
ACCESSION   DATABJ010000081 DATABJ010000000
VERSION     DATABJ010000081.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_59300"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(303..488)
                     /locus_tag="VHF44_01415"
     CDS             complement(303..488)
                     /locus_tag="VHF44_01415"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124239.1"
                     /translation="MNDIIITGERTRMAFESPPLWVWAIIVGVLIAGKFIYRWRVTKE
                     LAGESHERHEKIERAKD"
     gene            complement(708..1010)
                     /locus_tag="VHF44_01420"
     CDS             complement(708..1010)
                     /locus_tag="VHF44_01420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124240.1"
                     /translation="MKVRVYFSKEPDTVEIILKAHKISRQSLDTIYELVWECEFKNIL
                     NAGRIWLKFKENERPFGIPLREKRTHISISPGDIIQITNDFYVVDQIGATKIEVID"
     gene            complement(1072..1287)
                     /locus_tag="VHF44_01425"
     CDS             complement(1072..1287)
                     /locus_tag="VHF44_01425"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124241.1"
                     /translation="MHNGKKLVDTKVINCIEAIIAVLMEWTACPTTTQNKPDLIPYSS
                     IIEKVDLVGVEPTTSSISLPICKKGSG"
     gene            1393..>1601
                     /locus_tag="VHF44_01430"
     CDS             1393..>1601
                     /locus_tag="VHF44_01430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124242.1"
                     /translation="MNENKVLILGGGSGGLATAGRLKELLGNKINVTVIDKQRSFVLG
                     FSLLRIMTGEKSEQEVKVSKEKVSQ"
BASE COUNT          476 a          319 c          274 g          532 t
ORIGIN      
        1 ctcccagaaa agaaaatatg ggtatgatta acatcgtttt tgttgtttta gaaatcatac
       61 tatacaatac tgtagattta tcatttataa taatttcctt aaattttttt agcgtttata
      121 ggtgaaaagc tactttttta ccattaattt agcaagataa caatcaagag aaagttacag
      181 gagagagaca cgtatgcttc tatcatatag cctagtttct acttcttctc tgttggcaag
      241 taatatactg tattaaattg agctcatttt acgaaattgt cggacaaaaa ctcctgcaaa
      301 gcctaatctt ttgccctctc tattttctca tgcctctcat gagattcgcc tgcaagctct
      361 tttgttactc gccatctata aatgaacttg cctgcgatca ggactcctac tatgattgcc
      421 caaacccata gtggcggact ttcaaatgcc attcttgtcc tttcacctgt aataatgata
      481 tcattcatca aatatcaacc atcgcaaagc agccggcaat cgtgcttaaa agaaagaagc
      541 aagagatatt attttcaaac atctgctagc attgttactg cctgacgagt cccgctgccc
      601 ttgtaacatc tgaaacattt tgatactgct gtcttcgatt ttttgttgag cttatttcag
      661 gcagcgtcgg acaagagcct atgtcactct ctgtatgttt gaataatcta atcaattact
      721 tctatttttg ttgcaccaat ttgatcaacc acataaaagt cattagttat ttgaataatg
      781 tctccaggag atatgctaat atgagttctt ttctctctta gtggaattcc aaatggtctt
      841 tcattctcct taaactttag ccaaatccta cctgcattca gaatattctt aaactcacat
      901 tcccagacta actcatagat agtatctaac gactgcctac tgattttatg agcttttaag
      961 atgatttcaa ccgtatctgg ctccttggaa aagtagactc ttactttcat gaattacaac
     1021 taagacctta ggtagcttgg tacacacaat atattataga taagttctcc ttcatccgct
     1081 gcccttttta catatcggta gagagatgct tgaggtcgtg ggttcaactc ccaccaagtc
     1141 caccttttct attatagaac tatacggtat taaatcaggc ttattttggg tggttgtagg
     1201 acaggctgtc cactccatca agacagcaat aatagcttct atgcaattga tcactttggt
     1261 atcgacaagt ttttttccat tatgcaagag acttgactga aataatacac atcttcttta
     1321 aaggtacgag acttatccta tttacacttc ttaggttaca gatattatta agatattcat
     1381 atatctgaat acatgaatga aaacaaggtt cttatcctcg ggggcgggag tggagggctc
     1441 gccaccgcgg gtcgtttgaa agagcttttg ggaaataaaa tcaacgttac tgtcatagac
     1501 aagcaaaggt cttttgtttt gggattttca ttactccgaa tcatgacagg tgaaaagagc
     1561 gagcaagagg tgaaagtctc taaagagaag gttagccaaa a
//
LOCUS       DATABJ010000082         3009 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_500902, whole genome shotgun sequence.
ACCESSION   DATABJ010000082 DATABJ010000000
VERSION     DATABJ010000082.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3009)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3009)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3009
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_500902"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            78..419
                     /gene="hisI"
                     /locus_tag="VHF44_01435"
     CDS             78..419
                     /gene="hisI"
                     /locus_tag="VHF44_01435"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004635 - phosphoribosyl-AMP
                     cyclohydrolase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HEX2124243.1"
                     /translation="MNIKSVSDIDFPKRNGLLPVVVQDQKTKDILMLAYANEEALNNT
                     IKTGNAWFWSTSHNKLWMKGEESGHIQPVKEILVDCDSDALLYLVESQNPACHTGNRT
                     CFHNLLEKQKN"
     gene            595..1818
                     /gene="thrC"
                     /locus_tag="VHF44_01440"
     CDS             595..1818
                     /gene="thrC"
                     /locus_tag="VHF44_01440"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004795 - threonine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009088 - threonine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEX2124244.1"
                     /translation="MGSIRSLKCRECSKEYAPQFKYICEECFGPLDVVYNFSLNINKN
                     TFSSRDVKTYWRYFELLPIADKSNIVDLSAGFTPLQKAGGLAKQIGELKNLFIKNDSV
                     NPTFSFKDRPAGVAVSRAKETKLKAVGCASTGNLASATAAHAAKAELPCYIFCPSDIE
                     KVKIAQALSYGAEFVAVDGTYDDANRVASVIGDSKGIGVVNINMRPYYVEGSKTLAYE
                     VAEQLNWEVPDNLIIPVGSGAMLNAICKGFEELHELGLVDSLENLKITAAQPHGCAPV
                     VDAFKKKIEVVPVERPKTIAKSLAIGDPGDGRYVLKRLSQYNGFAEEATDEEIVDGIL
                     MLAKTEGIFTEPAGGVSVAVLRKLVEEDKIDKDEKVVCYVTGNGLKATESIVDVLPKF
                     RTVKPDVQIVSAMIR"
     gene            1830..>3009
                     /locus_tag="VHF44_01445"
     CDS             1830..>3009
                     /locus_tag="VHF44_01445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008641 - ubiquitin-like modifier
                     activating enzyme activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HEX2124245.1"
                     /translation="MVITQEMAKVEFVIPSVLNKGSGEKKISLESSDLQDAFNKVSDQ
                     MGEDFKLKVFDLNGKPRALINIYINGKNMRFNTDGMAMSLNDGDSIYILPAVAGGAEL
                     TSNDMQRYSRQIMLEEIGFIGMEKLRNAKVCVVGVGGIGNPVVTQLTAMGISKLRIVD
                     RDVIEISNLHRQHLYAEDDIGKVKVEAAAQRLRKMNTAVEIEAVPISITKYTAEGIVE
                     GFDVVIDALDSIDARYALNDACIKHNIPFIYAGALGMLGSVCTILPNKSACLRCMFPA
                     LVEDDMPTCSTEGVHPSILYLVGGIQVSEAVKIITGQKPALVNKLLYIDLNELSFDKV
                     QMFRHEECHSCGSKKKVDTVKVVQQQLLIEELCGRDMGKRTYTVTPSELSSPIDLMKI
                     I"
BASE COUNT         1043 a          472 c          642 g          852 t
ORIGIN      
        1 ggccaaatat tgcctttgta taagaactga tttattctaa ccttacttaa ttataacgga
       61 ggtgcagaga tagcaatatg aatatcaaat cagtatcaga catcgatttc ccaaaaagaa
      121 atggattgct tcctgtagta gttcaagatc aaaagacaaa agatatactc atgcttgctt
      181 atgctaacga agaagcgctt aataatacta ttaaaacagg aaatgcgtgg ttctggagta
      241 catcgcataa caagctatgg atgaaaggcg aagagtctgg gcacattcaa cctgttaaag
      301 aaatattggt agattgcgac tctgatgctt tgctttacct agtagaatcc caaaatcctg
      361 catgccatac gggcaatcga acctgttttc ataatcttct agaaaaacaa aaaaattaaa
      421 aatatttatg aattttttat attttttaat ataagaatac gttaataata actatcacaa
      481 aaaatttaat ttaataatta taaatttttt atattgaaaa aatatagtaa tactaaaatt
      541 gcacttagag aagcttatct attacaattc acgagagaga ggagagtaaa aagtatgggt
      601 agtatacgat cactaaaatg cagagagtgt agtaaagaat atgctccaca atttaagtat
      661 atatgtgaag aatgttttgg tccactcgat gttgtttaca atttttcttt gaatataaat
      721 aagaacactt tttcgtcaag ggatgtgaaa acatattggc gatattttga actcttacct
      781 attgctgata aaagcaatat tgtggacttg agtgctggtt tcactccttt acaaaaagca
      841 ggcgggcttg ctaaacaaat aggagaacta aaaaacttat ttatcaaaaa tgattctgta
      901 aatccgacat tttcatttaa ggataggccg gctggcgtag ctgtctcgag agccaaagag
      961 accaaattaa aagccgtagg atgtgcgtct acaggaaatc tagcttctgc aactgcagca
     1021 catgctgcaa aagcagaact gccctgttat attttctgcc cttcagacat tgaaaaggta
     1081 aagatagccc aagcgctatc atacggcgct gaatttgtag cagtagatgg aacgtatgat
     1141 gatgcaaaca gagtcgcatc tgtaataggc gactctaaag gcattggtgt agtcaatatc
     1201 aatatgcgac catattatgt tgaaggttca aagacacttg cctacgaggt agccgagcag
     1261 ctaaattggg aggttcctga caatctaata attccggttg gaagtggagc aatgttaaat
     1321 gcaatttgca aaggatttga agagctgcat gagcttggtc tagttgatag tctagaaaac
     1381 ctaaagataa cagctgcaca acctcatgga tgtgctccag tggtcgatgc atttaagaag
     1441 aaaattgaag ttgttcctgt agaaagacct aaaacaattg caaaaagtct tgcaataggt
     1501 gaccctggtg atggacgata tgtactaaaa agattgagcc aatataatgg atttgcagaa
     1561 gaagctacag acgaagaaat tgtcgatgga atactaatgc tggctaaaac agaaggcata
     1621 tttactgagc ctgcaggtgg cgtatctgta gcagtacttc gaaagctagt tgaagaagat
     1681 aaaatagaca aagatgaaaa agtagtttgc tatgtcacgg gtaacggact taaggctaca
     1741 gagtcaattg tagatgtact tccgaaattc cgtactgtaa aaccagatgt acaaatagtt
     1801 tcagcaatga ttagatgata tgtgtaaaaa tggtgataac acaagaaatg gccaaagttg
     1861 aattcgtgat tccatcggta ttaaataaag gctcgggaga gaaaaaaatt tcgttagaat
     1921 caagcgattt acaagatgca tttaacaaag tttccgatca gatgggagag gattttaaac
     1981 ttaaggtgtt tgatcttaat ggcaaacccc gtgctctgat caacatttac attaatggca
     2041 aaaatatgcg cttcaatacc gatggtatgg caatgtcact taacgatggt gattctatat
     2101 acatactacc cgcagttgct ggtggagcag agctgacaag caatgatatg caacgatatt
     2161 caagacagat aatgcttgaa gaaattgggt ttattggaat ggaaaaacta cgcaatgcaa
     2221 aagtctgcgt tgttggtgtt ggtgggattg gaaatcctgt tgttactcaa ttaactgcca
     2281 tgggaattag taaactaaga atagtggata gggatgttat tgaaatttca aacttgcaca
     2341 ggcaacacct ttatgcagaa gatgatattg gcaaagtcaa ggttgaagcg gcagcgcaac
     2401 gattgagaaa aatgaatact gctgttgaaa ttgaagcagt tccgatctct attactaaat
     2461 atacagcaga gggtattgta gaaggatttg atgttgttat agatgcgctt gacagcattg
     2521 atgctagata tgccctaaat gatgcatgta taaaacataa tatccctttt atttatgcag
     2581 gcgccctcgg gatgttaggt tccgtatgta ctatattgcc aaataaatct gcatgcctac
     2641 ggtgtatgtt tcctgcatta gtggaagatg atatgcctac ttgtagcacg gagggtgtac
     2701 atccgtctat actatatttg gtaggtggta ttcaagtctc agaggcagtc aagataatta
     2761 caggccaaaa acctgcgctt gtaaataagc ttctctatat agacttgaat gaactttcat
     2821 ttgacaaggt tcaaatgttt aggcatgaag agtgtcattc ctgtggatcg aaaaaaaagg
     2881 tagatacagt aaaagttgta caacagcaac tgttaataga agaactgtgc ggaagagata
     2941 tgggcaagag aacatacacg gtgactccat cagagctatc ttcaccaatt gatttgatga
     3001 aaataataa
//
LOCUS       DATABJ010000083         2239 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1807681, whole genome shotgun sequence.
ACCESSION   DATABJ010000083 DATABJ010000000
VERSION     DATABJ010000083.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2239)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2239)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2239
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1807681"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(137..1759)
                     /gene="tgtA"
                     /locus_tag="VHF44_01450"
     CDS             complement(137..1759)
                     /gene="tgtA"
                     /locus_tag="VHF44_01450"
                     /EC_number="2.4.2.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016763 - pentosyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0006400 - tRNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(15) transglycosylase TgtA"
                     /protein_id="HEX2124246.1"
                     /translation="MSFEVRYTDLAGRIGKLKTPHGSFETPAFIPVIHPVKQTITPQF
                     LKALGFNAVITNAYITLRHYGDEARKRGIHDITKYDGVIMTDSGGYQVLEYGSIDVEP
                     TVIAKFEKDIRSDISVPLDKPTGYGLKYEKAKDYVEQTLKNARETLNVIEEGRESKRI
                     KNNTGNEYYDDDINGTIWVGPIQGAEHSDLVKYSADALDKMGFNLLAIGSPVELMEAY
                     EFSLLAHMIATVKRTIPAKPIHLFGAGHPITIPLAVALGCDMFDSASYILYAKDNRYM
                     HSNGTSRLEDLSYLPCQCPICTTYSIKELFNMDKDSRTLEIAKHNLYILKAEVNAVKQ
                     AIMDGRLWEYVMQKAHAHPKLMEAMELFKTFEYLEEGTPIFKEKAVFLYDPIDQYRPE
                     VKRFRNMVSTFASLKNKERKLILYPDSDIHPFYSTGVFFQLIKKFPDAQICTYNPFFG
                     IIPSEISDIFPAAHNLSCKKPANHTHPKNYPSFIESLDRFIVNNNFEEIIIVADNFMR
                     QIVDDNFYNNIPTIKKLNPKVYDYDYNIITKL"
     gene            complement(1762..>2239)
                     /locus_tag="VHF44_01455"
     CDS             complement(1762..>2239)
                     /locus_tag="VHF44_01455"
                     /inference="COORDINATES: protein motif:HMM:NF026244.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Lsm family RNA-binding protein"
                     /protein_id="HEX2124247.1"
                     /translation="IRNKILKFIYILHKHILIRIFMSAVLSRRFGEETIQFLGKKVSI
                     ETSDQKIYNGTLTGIDEKLDVILDNIEGHGILKLILNGSFVKEIKLMEKPFDFKALSD
                     RLSRVFPGLVKIREDVGAIIVMDKIKLTKTGIEEGSGLAADRVKAIYDEFVRETKK"
BASE COUNT          664 a          400 c          357 g          818 t
ORIGIN      
        1 atagcataag aaaatagaat atctcaatga aaatgagata ttctattttc ttatgctatt
       61 ttctatcatt tgatgctttt gtaacattaa ttaatagttc tttagacagc tatataacaa
      121 aaagtatatt ttataattat aatttggtaa taatattata atcataatca taaacttttg
      181 gatttagttt ttttattgtc ggtatgttat tataaaaatt atcatcaact atctgccgca
      241 tgaaattatc tgccactatt attatttctt caaagttatt gtttacaatg aatcggtcaa
      301 gggattcaat aaagcttgga taatttttgg gatgagtatg atttgctggt tttttacaac
      361 tcaaattatg agcagctgga aatatatcgc ttatttctga aggaataatt ccaaaaaatg
      421 ggttataggt gcaaatctgt gcatccggaa attttttgat aagctgaaaa aaaactccag
      481 tagaataaaa tggatggata tcagagtctg gatataatat taattttctt tctttatttt
      541 ttaatgatgc aaatgtggat accatatttc tgaatcgctt gacctctggt ctatattgat
      601 ctatcggatc atagagaaat actgctttct ctttgaatat cggtgttcct tcttctagat
      661 attcaaaggt tttgaaaagt tccattgctt ccataagttt tggatgtgca tgagcctttt
      721 gcattacata ttcccacaat ctgccatcca ttatagcttg ttttactgca ttaacttctg
      781 ctttcaaaat atagagattg tgttttgcta tttctagtgt acggctatct ttgtccatat
      841 taaacaactc tttgatagaa taagtagtac aaattggaca ctgacatgga agatatgaaa
      901 ggtcttctag ccttgaagta ccattagaat gcatatatcg attatcttta gcatagagaa
      961 tgtacgaggc tgaatcaaac atatcacatc ccaacgcaac agccaaggga attgtgatgg
     1021 ggtgtcctgc tccgaaaaga tgtattggtt ttgcaggaat agtacgtttt actgtagcta
     1081 tcatatgtgc tagtagtgaa aactcatatg cctccattaa ctctacaggg ctcccaatag
     1141 ccaaaagatt gaaacccatt ttgtcaagtg catcggctga gtattttacc aaatctgaat
     1201 gttcagcacc ctgtattggc cctacccaaa ttgtgccgtt tatatcatca tcataatact
     1261 cattgccggt gttatttttg attctcttgc tttctcttcc ttcttctatt acattaagag
     1321 tttctctcgc atttttaagt gtctgctcaa catagtcttt tgccttctca tactttagtc
     1381 cgtaacctgt aggtttatca agaggcacag aaatgtcact tcgaatatcc ttctcgaatt
     1441 tggctatgac agtgggttcc acatcaatcg agccatattc taaaacttga tatcctccag
     1501 agtctgtcat tatcactccg tcatattttg ttatatcatg aattcctctc tttcttgcct
     1561 catcaccata atgtcgtaat gttatgtaag cattagtgat gactgcatta aagcccaagg
     1621 ctttaaggaa ttgtggagtt attgtctgct ttaccggatg gatgacagga ataaaagcag
     1681 gagtttcaaa actgccatgg ggagttttta atttaccgat acggccagcc aggtcagtat
     1741 atctgacctc gaaggacaat tttacttctt tgtctccctt acgaactcat catatattgc
     1801 cttaactcta tcagccgcaa gtccagaacc ttcttcaata cctgtctttg tgagtttgat
     1861 tttatccatt acaattattg ctccaacatc ttccctaatc tttactaaac ctggaaatac
     1921 tctagaaagc ctatctgata aagctttaaa atcaaaaggc ttttccatga gctttatttc
     1981 tttaacgaaa gaaccgttaa gaattaattt gaggattcca tgaccttcta tattatcaag
     2041 tatgacgtcg agtttttcat caatacctgt tagcgtgcca ttatatattt tttgatcaga
     2101 agtttcaata gaaacttttt tgcctaggaa ttgtattgtt tcttccccaa atctccgact
     2161 cagtactgca gacataaata ttcttatcag aatatgctta tgtaatatat atatgaattt
     2221 taatatttta tttctgata
//
LOCUS       DATABJ010000084         1877 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1588163, whole genome shotgun sequence.
ACCESSION   DATABJ010000084 DATABJ010000000
VERSION     DATABJ010000084.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1877)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1877)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1877
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1588163"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            589..771
                     /locus_tag="VHF44_01460"
     CDS             589..771
                     /locus_tag="VHF44_01460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124248.1"
                     /translation="MVIDNASKMTAIRKAIEILQESSSIKNKTMDVNEMNYVIDTLKD
                     IEKQLQVEQDEPIGTA"
     gene            934..1158
                     /locus_tag="VHF44_01465"
     CDS             934..1158
                     /locus_tag="VHF44_01465"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124249.1"
                     /translation="MTFVIIIIYREQLYQKERNQEEVFDSRAMSLSNKNRRKKAKQMK
                     RDEGGMGMCTSLLSPIYAPLPLGSILSLFL"
     gene            complement(1278..1553)
                     /locus_tag="VHF44_01470"
     CDS             complement(1278..1553)
                     /locus_tag="VHF44_01470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124250.1"
                     /translation="MQNGDKYSIRKTISEYREAFFAAMFNKHYTHAALYMKCMIVCVP
                     SELKFEAIEVPEANLMSSESATDYAKRLFKWIDSILPTIERKIADAI"
BASE COUNT          620 a          334 c          361 g          562 t
ORIGIN      
        1 gggcttatct ttttcttttc ttctgccacc taattttacg atatgggtgt attcgatatt
       61 gtgcttagct agccctattt tcatgtgatc tttattaagt tgtggccata atctggagct
      121 aggaaaacgc cgtatatcgg ccactatgga aatatcgttc ttcagcagta agataggaag
      181 atatcccatg agcgatttga atgcccgata gtaaagattg tcggattatt cataaacatg
      241 agacgcgtaa agtcacaata tagccattat gaatttgatt tatcgtttat tgttatcata
      301 atccttacta gcctagaatt ttctagggct tagaaattcg aaagggtaga tatcttggta
      361 gaatcttcta aaaaagaact gataaaggag caggcccgtc gggatttgga taagaattca
      421 tttgaatcct aacctgcaag tctgattagc taaagtaata catgacatag tgcattagtg
      481 tctgcctcac ggtgtaaaat ttaggtcacc tgacttccaa agtaatagaa gattctctgc
      541 aagaccttaa tacttcctcc tgctgattat tgttgctgat tatgtcttat ggtaatagat
      601 aacgcttcaa agatgacggc aattagaaag gccatagaga ttttacagga aagtagtagc
      661 atcaaaaaca aaacgatgga tgtcaatgaa atgaattatg ttattgatac tctcaaagac
      721 atagagaagc agctgcaggt agagcaagat gaaccaatag gcacagcctg atgataagat
      781 gtatcataca tattaaatgg tattctgcac taccaagcgg cagttagtat tacataaaca
      841 gaactgatag taatatctct acctttgcga aaagacacat acatcactct aagctaaact
      901 gacaaaaagc cccttgcggc gggaacaatt agaatgactt ttgttattat aataatctac
      961 agagagcagc tataccaaaa agaaagaaac caagaagaag tctttgattc cagagctatg
     1021 tcactatcca ataaaaatag gaggaagaaa gcaaaacaga tgaagagaga tgagggaggg
     1081 atgggcatgt gtacttctct cttgtcacca atatatgcac ccctccctct gggctccatc
     1141 ttgtctctct tcctttgatt tgctaatatt acaccaaact atgatggctc acgatatgga
     1201 atattgtgaa gaattgatat gctggaaagt caaagcaagg gaacgttcga gcgtcagctc
     1261 atttcactac atcgagatta aatagcatct gcgatctttc gctcaattgt ggggagtata
     1321 ctatcaatcc atttgaacaa tcttttagca taatctgtcg cactttcact agacatcaga
     1381 tttgcttcag gtacttcaat tgcttcaaat ttaagttctg atggaacaca tacgatcata
     1441 cacttcatat acaaagctgc atgggtgtaa tgcttattga acatagcagc aaagaatgct
     1501 tctctgtatt cacttatcgt tttcctgata ctatatttgt caccattttg catgacctat
     1561 gttatcaaag tatcagttat tagaagaata aggcatcaaa tagacagccg agggtccatc
     1621 gggatttaga taaaaattca ttggaattca aaggcaagaa cctgatgttt attattggaa
     1681 gtaacgcatt tctgagggat tcattaaaag actttcaaaa aatatactgt ccaattatta
     1741 taaaactagt aagcccttct acttagagta tatgttggca acaatgcgta tgcctatcat
     1801 ggattaggga ataaagcggt agtgtagcga gactaattta acggccttaa tatacggaat
     1861 aaatacctca tgttcat
//
LOCUS       DATABJ010000085         2565 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_714974, whole genome shotgun sequence.
ACCESSION   DATABJ010000085 DATABJ010000000
VERSION     DATABJ010000085.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2565)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2565)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2565
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_714974"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..947)
                     /locus_tag="VHF44_01475"
     CDS             complement(<1..947)
                     /locus_tag="VHF44_01475"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit alpha"
                     /protein_id="HEX2124251.1"
                     /translation="MVLKLTRKQYTDLFGASAGDKIRLGDSELMIEVEKDLITPGDEV
                     VFGGGKTIRDGLAQASGVTNADGALDFVITNAVILDPVLGIVKADIGIKDGKIAGVGK
                     SGNPLIMDKVNSKMIVSACTEATAGEHTICTAGHFDTHVHNICPQQYIDGISNGICNM
                     IGGGTGPADGTCATTCTPGVFNMSRMLEAIEDTPMNWGFLGKGNDSHPSLATQMEQIE
                     AGACGLKDHEDWGTTAAVLDASLRAVDATDTQLAIHTDSINECAYVEDTINAIDGRTV
                     HTYHTEGAGGGHAPDIMKIAGEQFALPSSTNPTRPYTVNT"
     gene            complement(965..1333)
                     /locus_tag="VHF44_01480"
     CDS             complement(965..1333)
                     /locus_tag="VHF44_01480"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0035550 - urease complex [Evidence IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit beta"
                     /protein_id="HEX2124252.1"
                     /translation="MTPGEYILSANPITCNGNKKTITITVKNTGDRPCQIGSHTHFFE
                     VNKALDFPREKAYGFRLNIPAGTSVRFEPGDSKEVELCELGGKRIVYGFNSLTMGGLK
                     SSNIKNASLQKARQSGFKGA"
     gene            complement(1410..1709)
                     /locus_tag="VHF44_01485"
     CDS             complement(1410..1709)
                     /locus_tag="VHF44_01485"
                     /EC_number="3.5.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009039 - urease activity [Evidence IEA];
                     GO_function: GO:0016151 - nickel cation binding [Evidence
                     IEA];
                     GO_process: GO:0043419 - urea catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="urease subunit gamma"
                     /protein_id="HEX2124253.1"
                     /translation="MLAPREIDKMMIWTAAQIAEGRKKKGIKLNYPETVAYIANYVVE
                     GAREGKRVADLMNSARTVLKRGDVMEGIPEMIHTVQVEVTFPDGTKLVTVHDPVQ"
     gene            complement(1860..2453)
                     /locus_tag="VHF44_01490"
     CDS             complement(1860..2453)
                     /locus_tag="VHF44_01490"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124254.1"
                     /translation="MNQFEFEQFLKFAEEEALYAKSDSEKIQDFILWCKKNNFEEIIL
                     RLSSEEKGGWSKNFCLDFTTTRIIVSKKRFLKKFVDLGYVAGLAPIPYMILSKKIKHS
                     YVKKQYNDDPPEDIIKRDPSNYHIPYSDIQQFIIRKGIETTVTNMVGTMIMKNFLTIK
                     TVNKTYDFTLPVNKDGKFEQIHFWLSVVLPVNVTKLE"
BASE COUNT          672 a          537 c          398 g          958 t
ORIGIN      
        1 gtatttacag tgtatggtct agttggattg gttgatgatg gcagagcgaa ttgttctcca
       61 gcaatcttca taatatctgg cgcatgacca ccacctgcac cttctgtgtg atatgtatgc
      121 acggtcctac cgtcaatggc gtttatagta tcttctacgt aggcgcattc atttattgaa
      181 tctgtatgaa tggctagctg tgtatcagtc gcgtctactg ctcttaaaga agcgtctaat
      241 actgctgcag ttgttcccca gtcttcatga tctttgagtc cgcacgctcc tgcttctatc
      301 tgctccattt gggttgctag agacggatga gaatcatttc cctttcctaa aaatccccag
      361 ttcataggtg tgtcttctat cgcttctaac attctgctca tgttaaagac tccaggtgta
      421 caggttgttg cacacgttcc atctgctgga ccagttcccc ctcctatcat attgcagatg
      481 ccattgctaa tgccatctat gtactgttgt gggcatatat tgtgaacatg tgtatcaaag
      541 tgtcctgcag tacaaatagt gtgttcacca gctgtagctt cagtgcatgc tgaaacaatc
      601 atctttgaat ttactttatc catgataagg ggattgcctg attttccaac tccagctatt
      661 ttgccatcct ttattccaat atcagcttta actattccta gcaccggatc tagaataacc
      721 gcatttgtaa ttacaaaatc aagagcacca tctgcatttg tgacaccgga agcttgcgct
      781 aacccatctc ttattgtctt tcctccacca aacacaactt cgtctcctgg tgttataaga
      841 tctttttcta cttctatcat taattccgaa tctccaagtc tgattttgtc tccagctgaa
      901 gctccaaaaa gatctgtata ctgtttacga gttaatttta gaaccatttc tcttttctct
      961 tctcctatgc tcctttaaat cccgattgtc ttgccttctg aagtgatgcg ttcttgatgt
     1021 ttgaagattt tagacctccc atggttaaac tattgaatcc atatacaatg cgcttacctc
     1081 ctaattcaca taattctacc tcttttgaat cccccggttc aaaccttact gaagttcctg
     1141 caggaatatt caatcggaat ccataagctt tttcacgtgg aaaatcaagt gctttattta
     1201 cttcaaagaa gtgtgtatga gaaccaatct gacaaggtct atcaccagta ttttttacag
     1261 ttatagtgat agttttttta tttccattac aagtaatagg atttgctgac agaatgtatt
     1321 cgcctggagt cattgctcta cgaacctccc gctctggaat ttttttttaa ttcgggactt
     1381 tgatttttta attaccattt ttttatcacc tattgaacag ggtcgtgcac cgttaccaat
     1441 ttggtgccat caggaaatgt gacttctact tgaactgtat gtatcatttc tggtattccc
     1501 tccataacgt cacctctctt caatactgtt cttgccgagt tcatgagatc ggctactctc
     1561 tttccttctc tagctccttc tacgacataa tttgctatat aagcaacggt ctcggggtaa
     1621 ttcaatttta tacctttttt ctttcttcct tctgctattt gtgcagcagt ccaaatcatc
     1681 attttatcaa tttctcttgg cgctaacatc aattctataa tctacctcaa aatatagtaa
     1741 aacttgagtt attttaaagt tcaaaaattt aagttatata taaaataaat tattctctca
     1801 gagttgtttg ttactgtgat tcttctagat atgcttattt agtcgatgtc gactaaattt
     1861 tattctaact ttgtcacatt gactggaagc acaacgctta gccaaaaatg tatttgttca
     1921 aattttccat ctttatttac aggtaatgta aaatcatatg tcttatttac tgtcttgatt
     1981 gtgagaaagt ttttcattat catagtaccg accatattag ttaccgttgt ttctattccc
     2041 tttctaataa taaattgctg tatatctgag tacgggatat gataattgga tggatccctt
     2101 tttattatat cttctggcgg atcatcatta tattgtttct tcacatacga atgctttatt
     2161 ttttttgata atatcatata aggaattggt gctaatcctg caacatagcc caagtctaca
     2221 aacttcttga gaaatctctt cttgctaact attattctag tagttgtaaa gtcaagacaa
     2281 aaattcttgc tccatcctcc cttttcttca gagcttaatc tcaaaataat ttcttcaaaa
     2341 ttgttctttt tacaccataa aataaagtct tgaatttttt ctgaatctga cttggcatac
     2401 aatgcctctt cctctgcaaa ttttaaaaat tgctcaaatt caaattgatt cattaacttt
     2461 tgtaaacact actctgagta gattgtatgt aaggtttatt ctatcatcta tttaataaaa
     2521 agagaagaga gaggttttct cctttattct atctacggtg gtctt
//
LOCUS       DATABJ010000086         1939 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1368225, whole genome shotgun sequence.
ACCESSION   DATABJ010000086 DATABJ010000000
VERSION     DATABJ010000086.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1939)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1939)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1939
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1368225"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..257
                     /locus_tag="VHF44_01495"
     CDS             <1..257
                     /locus_tag="VHF44_01495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124255.1"
                     /translation="ARYENVPIWKTHGRYRKQMKYGYSKLLYNQRNKDETILSVIKRL
                     FGEYITSKSVKTQNRELCFRCIAYNMHRLTNLIVVLMVST"
     gene            complement(305..1081)
                     /gene="cobM"
                     /locus_tag="VHF44_01500"
     CDS             complement(305..1081)
                     /gene="cobM"
                     /locus_tag="VHF44_01500"
                     /EC_number="2.1.1.133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0046026 - precorrin-4
                     C11-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-4 C(11)-methyltransferase"
                     /protein_id="HEX2124256.1"
                     /translation="MVESNTVFFVGSGPGDPELITIKAKNLLEEADVVIYSGSLLNPE
                     ILKYAKKDAQLYDAALLDREKIYEILRDSTNNGKIAIRFHDGDPGLFSTIREQIDKLE
                     KDGIQCKVVPGITAILGAASAMNLELTLPGITQTVIITRAEFRTPVPEREKISELAKH
                     GATMAFYLSVHLISDIVEELLKGGVYTQKTAAAIVYRATWEDQKIIKGTLGDIVKKTK
                     ESKIIKTALIIVGDAIAPQGYEFSRVYDAGFTHGYRRSKK"
     gene            complement(1074..1796)
                     /gene="cobI"
                     /locus_tag="VHF44_01505"
     CDS             complement(1074..1796)
                     /gene="cobI"
                     /locus_tag="VHF44_01505"
                     /EC_number="2.1.1.130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030788 - precorrin-2
                     C20-methyltransferase activity [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-2 C(20)-methyltransferase"
                     /protein_id="HEX2124257.1"
                     /translation="MKLFCVGCGPGDPELLTVKAVNTIKNAEIIFAPTAREGKPSIAL
                     SVVERYVDKFAKKVDLVFPMVKDRESLKDYWKRNADKIADAVRTEKRVIYLTVGDPAL
                     YSTWIYIHRELQKNHSDIEIDIVPGIASIFAFAAQAKMSLVEGDETLAIVPACYDLDR
                     VKQTANSCDTVIFLKDGRYFDSVIEMLADVGFADDSMIGIAQDVSVTGEIMKMSKLSD
                     LRGIKGNTEKYFSIMVAKKKNG"
BASE COUNT          570 a          395 c          291 g          683 t
ORIGIN      
        1 ctgcaagata tgaaaatgta ccaatatgga agacacatgg aagatatagg aaacaaatga
       61 agtatggata ttccaaattg ctatacaatc aacgaaacaa ggatgaaact atactttcag
      121 tgataaaacg actatttgga gaatacatta catcaaagtc ggtaaagaca cagaacagag
      181 aactatgctt tagatgcata gcctataaca tgcatagatt aactaatcta atcgtagtgt
      241 tgatggtttc tacatagcct gacaatggat atattttgac actctaatat cctatttcca
      301 ccctctattt ttttgatcgt ctgtatccat gcgtaaatcc tgcatcatat actctagaaa
      361 attcgtagcc ttgtggtgct atcgcatctc caacaataat taatgcagtt ttgattattt
      421 tagattcttt tgttttcttc acaatatctc caagagttcc ttttattatc ttctgatctt
      481 cccaagtcgc tcgataaaca attgctgctg ctgtcttttg tgtatatact ccacccttca
      541 gtagctcttc tacaatatcg ctaatcaaat gaacactgag ataaaatgcc attgtggccc
      601 catgctttgc aagttctgaa attttttctc tctcgggtac tggagttcta aattctgcac
      661 gtgttattat cacagtttga gtaatacctg gaagagttaa ttccaagttc atggcagaag
      721 ccgcaccaag tattgcggtt attcctggaa ctactttaca ttgtattcca tccttttcta
      781 atttgtcgat ttgctctcta atggtactaa aaagtccagg atcaccatca tggaatctaa
      841 tggcaatttt accattattt gttgaatctc ttagaatttc ataaattttt tctctatcca
      901 gtagagcagc atcgtacaat tgcgcatctt tctttgcata ttttaatatt tctggattta
      961 gcaaggaacc agaataaatt acgacatctg cttcttctaa cagatttttc gctttaatag
     1021 ttataagttc agggtcgccg ggaccagacc ctacaaaaaa aaccgtattg ctttcaacca
     1081 tttttcttct ttgccaccat tatggagaag tatttctctg tattaccttt tattccacgc
     1141 aaatcgctaa gtttgctcat tttcattatt tcacctgtta ctgatacatc ttgagctatt
     1201 ccaatcatcg aatcgtctgc aaagcctacg tcagcaagca tttcaattac actgtcaaaa
     1261 tatctgccat ccttgagaaa aattactgta tcgcagctgt ttgctgtctg tttaactcta
     1321 tctagatcat aacaagcagg aactatagcg agagtttcgt ctccttccac tagactcatt
     1381 tttgcctgag cagcaaatgc aaagatagat gcaataccag gcactatgtc tatttctata
     1441 tcactgtgat tcttttgcag ctctctgtgt atgtatatcc aggtactata taatgcagga
     1501 tcaccaacag taagatagat tactcttttc tctgttctta cagcatccgc tattttgtca
     1561 gcatttcttt tccaataatc ttttaaagat tctcgatctt tgaccatagg aaatacaaga
     1621 tctactttct ttgcgaattt atccacatat ctttcaacta cagaaagcgc gatgctaggt
     1681 ttgccctccc ttgctgtagg tgcaaaaata atttctgcat ttttaatcgt atttaccgct
     1741 ttgactgtca ataattcagg atcccccgga ccacatccta cacaaaatag tttcatttac
     1801 attttctgaa agaagagcgt tatttaaaag atcgtaatcc tttgattata tgtggttgtt
     1861 actaaaatta ttgaacccat gttgatatat taatttctac caattatcta ttttttatta
     1921 cacagttatt atttaaatg
//
LOCUS       DATABJ010000087         2185 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1156064, whole genome shotgun sequence.
ACCESSION   DATABJ010000087 DATABJ010000000
VERSION     DATABJ010000087.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2185)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2185)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2185
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1156064"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..191)
                     /locus_tag="VHF44_01510"
     CDS             complement(<1..191)
                     /locus_tag="VHF44_01510"
                     /inference="COORDINATES: protein motif:HMM:NF014458.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEX2124258.1"
                     /translation="MLDSKLLKQNPEVIIDMLKKRKIEFPINDLISLDKRRREIIVEM
                     QHVKHKKNILSHSIASKKK"
     gene            complement(184..450)
                     /locus_tag="VHF44_01515"
     CDS             complement(184..450)
                     /locus_tag="VHF44_01515"
                     /inference="COORDINATES: protein motif:HMM:NF011470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KEOPS complex subunit Pcc1"
                     /protein_id="HEX2124259.1"
                     /translation="MPNSQPLLEITAIIELNFPNQSEKEAIMKALMPDNINFPKGLSM
                     DMSSKDNTTICIKFSSCTQIETLINTVDEVLQDISLAKKVITDA"
     gene            complement(425..1864)
                     /locus_tag="VHF44_01520"
     CDS             complement(425..1864)
                     /locus_tag="VHF44_01520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHH family phosphoesterase"
                     /protein_id="HEX2124260.1"
                     /translation="MSDKEIYQALKAFCDKIEFMVENEKEITIISHLDADGIASGSII
                     SLALARKGAKCVVRTISGMTLNVLEQMRSEDHDFYIITDLGAGMANEFNQALDNRWAI
                     IDHHQIPQQEISIDDNNQILNAWKYGIDGGKEISAGGMAYMVATTLDRKNKNLSPIAI
                     VSALADRQDQGDKKSLLGLNSEIVKTAQSLRLISMDLDLLLTGRETRPIHEALAFTAF
                     PYIEGLTWATESCYALIKNAGIKMIKNGRWRTLSEISQDEKNIILNAITEYVVNSSKN
                     KEVNIIDNLIGYTYTLINEDQRSLLRDAREFSTMLSACGRIRKSGVGIGICMGDRNDL
                     LNEGEKIITKYRTTVRNYITSIFAEKWRMIDNGKSVFINGEGLLTEDMLGAISSLLSG
                     SPTLGGRLIFVRTLTNDGFYKFSCRKSVGSTSKSDLGLIMRYCSESVGGSGGGHSLAA
                     GCKIPLAKLEEFLSAVRNAILDAKFTAAS"
     gene            complement(1874..>2185)
                     /locus_tag="VHF44_01525"
     CDS             complement(1874..>2185)
                     /locus_tag="VHF44_01525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEX2124261.1"
                     /translation="PSEIGLRLRDEYGIPLAKPVVGKAISDILVDNDIIRDMPEDLEH
                     LVMKALGLQKHLRTHNSDHRNVRSLELIESKIHRLSKYYKRIGKIKKNWKYAAVIAQL
                     E"
BASE COUNT          617 a          440 c          359 g          769 t
ORIGIN      
        1 tcttttttct tggaggcaat agaatgtgaa agtatgttct tcttatgttt gacatgctgc
       61 atttctacaa taatttcacg tcgtctcttg tctagggaaa ttagatcgtt aattggaaac
      121 tctattttcc ttttcttaag catatctatt atgacttctg gattttgttt cagtaatttt
      181 gagtcaagca tcggttatca ctttttttgc aagcgaaata tcctgtaaaa cttcatctac
      241 agtattgatc aaagtctcga tctgagtaca ggaggaaaat ttgatacaaa tagtagtgtt
      301 atcttttgaa ctcatgtcca tagatagacc ttttggaaag ttaatattat ctggcatcaa
      361 tgccttcatg attgcctcct tttcagattg gtttgggaag tttaattcta tgatagcagt
      421 tatttcaaga agcggctgtg aatttggcat ctagtattgc gttcctaact gcagataaaa
      481 attcttccaa tttcgccaat ggaattttac atcctgccgc caaagaatga ccgcctccac
      541 ttccaccaac agattctgaa caatatcgca ttatcaaacc cagatctgac tttgatgtac
      601 ttcctacgga ttttctacaa gaaaatttat agaagccgtc attagttaag gttctcacaa
      661 aaataagtcg gccaccaaga gttggagacc cactcaataa agatgaaatt gctcctagca
      721 tgtcttcagt caaaagtccc tctccattaa taaaaactga cttgccatta tcaatcatgc
      781 gccatttttc agcaaaaata gaagttatat agtttcttac ggttgttctg tattttgtga
      841 ttatcttctc gccttcattt aaaagatcat tcctatcgcc catacaaatt ccaataccca
      901 ctcctgactt tcgaattcgt ccacatgcac tcagcatagt cgagaattcg cgtgcgtcac
      961 ggagtaggct tctttgatct tcgttaatta gtgtgtatgt atatcctatc agattatcga
     1021 ttatatttac ttctttgttt ttcgatgaat tgactacata ttctgttatt gcatttaaaa
     1081 ttatgttttt ctcatcttga gaaatttcag aaagcgtacg ccatcgtccg tttttaatca
     1141 tttttatccc tgcatttttt atgagtgcat agcaggattc tgtagcccac gtcaagcctt
     1201 cgatgtatgg aaaagcggta aaggcaagtg cttcatggat tggccgagtc tcacgtcctg
     1261 taagcaaaag gtccaaatcc atactaatga gtcgaagcga ctgagcagtc ttaactattt
     1321 cagaattaag gcctaaaagg gattttttat ctccctgatc ttgtctgtca gcaagtgcag
     1381 aaacaattgc gattggagat agattcttat tttttctatc aagtgtagtt gcaaccatat
     1441 atgccattcc tccagcagaa atctctttac ctccgtctat gccatatttc caagcattta
     1501 ggatttgatt attgtcatca attgatattt cttgttgagg aatttgatgg tgatcaatta
     1561 tggcccatct gttatcaaga gcttggttaa attcattagc catccctgca ccgagatcgg
     1621 taattatgta aaaatcatga tcttcagagc gcatttgctc tagaacattc aaagtcatac
     1681 ctgagatggt acgaacaacg catttagcgc cttttctagc caatgctaaa gatataatac
     1741 ttcctgaagc tattccatcc gcatccaaat gactaataat agtaatttcc ttctcatttt
     1801 caaccataaa ttcaatcttg tcacaaaaag cctttagagc ttgatagatt tctttatcac
     1861 tcatgctaaa ttcttattct aactgcgcaa taactgcggc atacttccag tttttcttaa
     1921 tcttacctat tctcttatag tatttggata atctgtgaat ttttgattct attaattcca
     1981 gagatcggac gtttctatga tcactattat gagttctaag atgcttctgt agacccaaag
     2041 ctttcataac caagtgttct agatcttctg gcatgtctct tatgatgtca ttatctacaa
     2101 gtatatctga tattgcttta cctacaacag gcttagcgag agggattcca tattcgtcac
     2161 gtaaacgcaa tcctatttca cttgg
//
LOCUS       DATABJ010000088         2608 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1589803, whole genome shotgun sequence.
ACCESSION   DATABJ010000088 DATABJ010000000
VERSION     DATABJ010000088.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2608)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2608)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2608
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1589803"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(111..>2608)
                     /locus_tag="VHF44_01530"
     CDS             complement(111..>2608)
                     /locus_tag="VHF44_01530"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF004417.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-directed DNA polymerase I"
                     /protein_id="HEX2124262.1"
                     /translation="AEKIVQNEKKYSLESTKKIDLISDREVDILKIIAPDPLSIGGTE
                     NSIREKITSWEADIKYHENYLYDTGLIPGSYYIRKEEEIKRFEYPISNKVQEELKNLL
                     WNKIKEEEDKKGNNEYRQYITNWAKLLNQPIPNLKRVSIDIEVESEEGRMPTPRDHER
                     PVIAVGFVANDGFKKVLVLESDESRDDRYSFIQEVEICKTEKELLKKTFQIINSYPII
                     VTYNGDDFDLPYLYARSQDPRIDPVGKEIISKDEIPIIIKRESFVKRGIQAEPVQIKH
                     GLHLDLFRTFQNRSVQIYAFSRKYTEYTLNAICEALLNDSKIEFDGDISDLPIQKLAE
                     YCLKDADLTFRLTSFNDNLLMKLLVVISRISRLSIDDVARFGVNQWIRGMLYYEHRQR
                     KALIPRRDELQAKGSSSTTAIIKEKKYRGGLVVEPALGIHFNVVVVDFASLYPSIIKV
                     HNLSYETVNCPHQSCMNDSAQHISETTHWICKEKRGLTSLLIGSLRDLRVNYYKYLSR
                     DKSISAEERQLYNVVSQAIKVILNASYGVMGAEIFPLYCLPVADATAAIGRTTTTKTI
                     EKCKEVGIDVIYGDTDSLFLKNPSTASVEEISAWARNNLGIDLEIDKQYRYVVFSDLK
                     KNYLGVVQDGTVDVKGLTGKKSHTPPFIRNAFYKILDILGDVNSTNDFEFAKEQIKKI
                     IQENARNLELGKIPLPDLSFNVMVNKSPNKYGKKTSAISRPSSLDGNTKDREVETYKG
                     LPQHIKAAKLLLDNGKEIKAGDIISYVKTKTGEGVKPIDLLIRMEDIDTEKYLETMEA
                     TFDQLLSSLNFNFKSILGKPRQSNLDELFLIQA"
BASE COUNT          738 a          489 c          399 g          982 t
ORIGIN      
        1 atggaggcaa ctttcgacca gcttctctca tctttaaact ttaatttcaa atctatattg
       61 ggcaagccta gacaatcgaa tttagatgag ttgttttgga gtagataaag ttaagcttgt
      121 atcaaaaaca actcatctaa attcgattgt ctaggcttgc ccaatataga tttgaaatta
      181 aagtttaaag atgagagaag ctggtcgaaa gttgcctcca ttgtctcaag atatttttca
      241 gtgtctatat cctccatcct gatcaaaaga tctataggtt taactccttc tccagttttc
      301 gtttttacat aggaaattat atctccagct ttaatttctt ttccgttatc tagtagtaat
      361 ttagctgctt taatatgctg gggcaatcct ttatatgttt caacttctcg atcctttgta
      421 ttaccgtcta atgaagatgg tctactaata gcagatgtct tcttaccata tttattggga
      481 gatttattta ccataacatt aaaacttaga tctggtagag gtattttccc gagttctaag
      541 tttctagcat tttcttgaat aattttttta atctgttctt tagcaaattc aaaatcattc
      601 gttgaattaa cgtctcctaa aatgtccaag attttataaa atgcattgcg tataaatgga
      661 ggagtatgtg atttctttcc tgttaaccct ttgacatcta ccgtaccatc ttgtacaact
      721 cctaaataat ttttctttaa atcactaaat acaacatatc tatattgctt gtcgatttca
      781 agatctatac caagattatt tcttgcccat gcagatattt cttcaacact ggcagtagat
      841 gggtttttta aaaaaagtga gtcagtatct ccatatataa cgtctatgcc tacctctttg
      901 catttttcaa tagttttagt tgttgttgtc ctccctattg ccgctgttgc atcggctaca
      961 ggcaaacagt agagcggaaa gatttccgca cccattactc cataactggc gttaagaatt
     1021 actttaattg cttggcttac tacattgtat agttgccgct cttcagcaga tatactctta
     1081 tctctagaaa ggtacttgta ataatttact cttaaatctc gtagtgaacc aattaaaagg
     1141 gatgttaaac ctctcttttc tttacatatc caatgtgtgg tttctgatat atgctgtgct
     1201 gaatcattca tgcaagattg atgaggacaa tttactgttt catatgaaag attatgtact
     1261 ttgataatgc tcggatatag acttgcaaag tccacaacta ccacattaaa atggatgcca
     1321 agagcaggct ctactaccaa accacctcgg tattttttct cttttataat tgcggtagtt
     1381 gacgaactgc cttttgcttg aagttcatca cgccgtggta taagtgcctt cctctgacga
     1441 tgctcataat ataacattcc ccttatccat tggttaacac caaaacgagc gacatcatca
     1501 attgataatc ggcttatcct agatatgact actaaaagtt tcattaataa attgtcatta
     1561 aaactcgtca atctaaaagt cagatctgca tccttgagac aatactctgc cagcttttgt
     1621 attggcaggt cgctaatatc accatcaaat tcgattttac tatcatttaa tagagcttca
     1681 catattgcat taagtgtgta ttccgtatat ttacggctaa aagcgtagat ttgtactgat
     1741 ctgttttgaa atgttctgaa taaatccaga tgtaatccat gttttatttg aacaggctct
     1801 gcctgtattc cacgctttac aaaactctct cttttgatta ttattggaat ctcatccttt
     1861 gagattatct ccttgccaac aggatcaatt cttggatctt gggatcttgc ataaaggtaa
     1921 ggaaggtcga aatcatcgcc attatatgta acaataatag gataagaatt aatgatttga
     1981 aatgtttttt ttaataattc tttttctgtt ttacaaatct caacctcttg aatgaatgaa
     2041 taacgatcat cacgggattc atccgattct aggacgagta cttttttaaa tccatcattt
     2101 gccacaaaac cgactgcaat aacaggtcgc tcatgatctc gtggcgtggg catcctccct
     2161 tcttctgatt cgacttcgat atctatggaa actcttttca gattaggaat aggttgattg
     2221 agaagtttcg cccaattcgt aatgtattgt cgatattcat tatttccctt tttatcttcc
     2281 tcttctttta ttttgttcca taatagattt tttagctctt cttgaacttt attagaaatt
     2341 ggatattcga accgttttat ttcttcttct ttcctaatat aatacgatcc aggaattagt
     2401 ccagtatcat atagataatt ttcatgatat tttatgtctg cttcccatga tgttattttt
     2461 tctctgatgc tattctcagt tcctccaatt gataatggat caggagcaat tatttttaat
     2521 atatctacct ctctgtcaga tattaagtcg attttctttg ttgattctaa tgaatatttt
     2581 ttttcatttt gaacaatttt ttcagctg
//
LOCUS       DATABJ010000089         2575 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_63307, whole genome shotgun sequence.
ACCESSION   DATABJ010000089 DATABJ010000000
VERSION     DATABJ010000089.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2575)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2575)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2575
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_63307"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..940)
                     /locus_tag="VHF44_01535"
     CDS             complement(<1..940)
                     /locus_tag="VHF44_01535"
                     /EC_number="2.1.1.195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009236 - cobalamin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-5B (C(1))-methyltransferase"
                     /protein_id="HEX2124263.1"
                     /translation="MAYLEKSEEEEEGLKLAEQEQELPFEIEEKRKQGKLRTGYTTGT
                     SAAAATKAALLALIYGKTVDNVVVSLPKEKQATIKVAWTRIEGRDSATSAVIKYAGDD
                     PDITDGAEICSTVSFSDEKDKMLIDGGKGVGRITKPGLGLEIGKAAINPTPIKMIEQA
                     VQEVLANVPHLKEHGISIIISVPKGEELAKRTDNPRLGILGGISILGTTGIVLPYSTA
                     SFAASIRQSLDVSLASGTYTVVLTTGGRSEDFAKSILGKSLPDHSFIQIGDFAGYAIK
                     QCSNKKIHKAIIAGFIGKLTKMAMGIKQTHVRGSHVN"
     gene            complement(953..1711)
                     /locus_tag="VHF44_01540"
     CDS             complement(953..1711)
                     /locus_tag="VHF44_01540"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2124264.1"
                     /translation="MSLKGKIAVVTGSTKGIGFAISKEFAENNGATVIVCSRSIQNAE
                     RAAEQINGKVFAAEIDITNNSSVRSFLQHVISNHNRIDILINNAGYPFDSGIWYKEFH
                     MTTDDELDKIIEVDLKGSVRLSKAVINYMLKDAIGGVIINISSTPAIVGHVQGAPYTL
                     AKAALIALTKHIAMEYGRNNIRAYTLALGNIATEATFNSMSKENRKKAGEEASMKRWG
                     KPEEVAKVAACLAGCNFSFTTGNTIVIDGGTVLL"
     gene            1811..>2575
                     /locus_tag="VHF44_01545"
     CDS             1811..>2575
                     /locus_tag="VHF44_01545"
                     /inference="COORDINATES: protein motif:HMM:NF013341.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIO1 family regulatory kinase/ATPase"
                     /protein_id="HEX2124265.1"
                     /translation="MSSLEVAVAIVRMLELEDFKLLKVFASGMKHHESLTREQIVNYS
                     KQHRDYIDYRIRRLHEMKLLGKTEAGYTLLMAGLDAIALKILADKDVIVGIGKPIGIG
                     KESDVIKAVTPSGEERAIKFFRIGRISFRDVRRKRTYGDNESIHNWLLINIEAAKKEY
                     DILHALKSTGIRIPTGYYRAMHCIVMNNICGSRLVDQKKLRRPALILQSILSDLRTCY
                     NNDIINCDVSEYNTVLDVNDNIWIIDWPQAVSRKHPN"
BASE COUNT          768 a          506 c          435 g          866 t
ORIGIN      
        1 tatttacatg cgatcccctt acatgagttt gtttgatccc cattgccatc ttagttaatt
       61 ttccaatgaa tcctgctatg atagctttat gaattttttt atttgaacat tgctttatag
      121 catagccagc aaaatcgcct atctgtataa aggagtgatc gggtaatgat ttaccaagta
      181 ttgatttagc aaaatcttca ctacgacctc ctgtagtaag gaccactgta tatgtgcccg
      241 atgcaagaga gacatctaga ctctgacgga tagaggcagc aaaagatgcg gtagaatacg
      301 gcaaaactat tccggtagtg ccaagtatcg agattcctcc taatataccc aatctcggat
      361 tatcagttct tttagcaagt tcttctcctt tcggaactga aatgattata ctaataccat
      421 gttctttcag atgaggcaca ttagccagca cctcttggac agcttgttca atcattttta
      481 ttggtgttgg attaattgca gcttttccaa tttcaagccc caatcctggc tttgttatcc
      541 taccaacacc tttacctcca tcgataagca tcttgtcttt ctcatctgaa aaggaaacag
      601 tggaacaaat ttcggctccg tctgttatat caggatcatc tcccgcatat tttataacag
      661 cagatgtagc tgaatctctt ccttcaatcc ttgtccatgc aactttaatt gttgcctgtt
      721 tttccttagg taatgaaact actacattat cgacagtttt cccatatatc aatgctaaaa
      781 gtgctgcctt ggtagctgca gccgctgaag ttcctgtagt atagcctgtc ctcagtttgc
      841 cttgttttcg cttttcttca atttcaaaag gaagttcctg ttcttgttca gctaacttta
      901 atccttcttc ttcttcttcg cttttttcaa gatatgccaa ctagttaccc cactacaata
      961 atacagtgcc accgtctatt acaattgtat tgcctgttgt aaatgaaaag ttacaacctg
     1021 ccagacaggc agcgaccttc gcaacttcct ctggttttcc ccaccttttc attgatgctt
     1081 cttcaccggc cttcttccta ttttctttac tcatagaatt gaatgttgcc tctgttgcta
     1141 tgttaccaag agccagagta taagctcgaa tgttatttct tccatactcc attgcaatat
     1201 gtttcgtcaa tgctataagt gcagctttag ctaaagtata aggagcccct tgaacatgtc
     1261 ccactatcgc aggagttgaa gatatattaa ttattactcc tcctattgca tcttttagca
     1321 tgtaattgat aactgcctta gatagtcgta cagatccttt taaatcaact tctataattt
     1381 tatctaattc gtcatctgta gtcatatgaa attctttata ccaaattcca ctatcgaaag
     1441 gatatcccgc attatttatt agaatatcaa ttctattgtg attcgagatc acatgctgca
     1501 aaaagctcct tacgctagag ttgttagtta tatcaatttc tgcggcaaaa actttaccgt
     1561 tgatttgttc agctgctctc tctgcatttt gaatactcct tgaacagaca atgactgttg
     1621 cgccattatt ttctgcaaat tcttttgaga tagcaaaacc aatgccttta gtagagcctg
     1681 taacaactgc tatctttcct ttaagcgaca atttactcgt tatttttttt actataagta
     1741 tgtttatagc tatctatatg attatttcat aaccatttaa ttgacagaat catattatgg
     1801 attagtcttc atgtcttctt tagaagttgc agtcgcaata gttagaatgt tagagctaga
     1861 ggattttaag ctgcttaaag tttttgcatc tggtatgaaa catcatgaat ctttaacaag
     1921 ggaacaaata gtgaattatt caaaacaaca tcgagactat atagattatc gaatccgtcg
     1981 acttcatgaa atgaaattat taggaaagac cgaagctgga tatactcttc tcatggcagg
     2041 tcttgatgca attgccctca agatacttgc tgataaagac gtgatagtag ggataggaaa
     2101 acccataggt attggcaaag aatcagatgt aattaaagca gttactccat caggtgaaga
     2161 acgtgcaatc aagttcttta gaattggcag gattagtttc agagatgtga ggagaaaaag
     2221 aacatatgga gataatgaaa gtattcataa ttggctactg ataaacatag aggcagcaaa
     2281 aaaagaatat gatattttac atgcgcttaa aagcaccgga ataagaattc ccactggata
     2341 ttatcgcgca atgcactgta tcgtaatgaa taatatatgc ggatcaagac ttgttgatca
     2401 aaaaaaattg agaaggcccg cactaatttt acaaagtatt ttaagtgatc ttcgaacttg
     2461 ctacaataat gatatcatta attgtgatgt cagtgaatat aatactgtat tagacgttaa
     2521 tgataatatt tggataattg attggccaca agctgtctca agaaaacatc caaat
//
LOCUS       DATABJ010000090         2180 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_940689, whole genome shotgun sequence.
ACCESSION   DATABJ010000090 DATABJ010000000
VERSION     DATABJ010000090.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2180)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2180)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2180
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_940689"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(239..628)
                     /locus_tag="VHF44_01550"
     CDS             complement(239..628)
                     /locus_tag="VHF44_01550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2124266.1"
                     /translation="MSSKGSILIVDDEIDITLAFKKGLESNGFMVDIYNDPVTALLNF
                     KSDFYDLILVDVRMPKMNGFELYQEIEKVDKKSKVCFITAFEVYYHALREIFPTLEVG
                     CFIRKPIEIDDLVKRINSEIHSTDIDK"
     gene            complement(807..912)
                     /locus_tag="VHF44_01555"
     tRNA            complement(join(807..841,874..912))
                     /locus_tag="VHF44_01555"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(875..877),aa:His,seq:gtg)
     gene            complement(999..1817)
                     /locus_tag="VHF44_01560"
     CDS             complement(999..1817)
                     /locus_tag="VHF44_01560"
                     /inference="COORDINATES: protein motif:HMM:NF013909.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEX2124267.1"
                     /translation="MMIDTDDIMNIGLKLVGWNRIPPDSAIHVKGRKIKRVLIAVDVT
                     SAELLLAKNLGCDAVIAHHPLGPAAINFYKVLDRHAEFMIEHGVPPDKAEDRVKNLKN
                     RIEIKNHAHIYNDVIDAARIIGMPLVNIHQPCDEYMRKRILDKINAGNHDLVLDVVKS
                     IEDIPEFRNAETRVKVAHGSPKNKFGRWVLVLAAGTNGGFPIAKAYFEHEISTIIYLH
                     IDYNDLRKMYEENLKGNLIVLGHLAGDSIGLNALADRLEDKDVETIRLGIIPPN"
BASE COUNT          658 a          432 c          314 g          776 t
ORIGIN      
        1 gtactcaaat tataccagaa tttggaccga tctctgcaat catattggca atatccatca
       61 taggatttat cttagcagcc acaaaatata ataaactgag ttttattcca aagcattaat
      121 tttttctttt tctgatagta atggggaagt gacttgtaat ccttctaatt ttctacagaa
      181 tttgtattcc gctttccctc atagttctat attatcttca aacattccta taggtcgatt
      241 atttgtctat atctgttgaa tgtatctctg agtttattct ttttactaaa tcatcaattt
      301 caattggttt tcgaataaaa caacctacct ctaatgtcgg aaatatttct cttaatgcat
      361 gataatagac ttcaaaagca gtaataaaac aaaccttgct ctttttgtct accttttcta
      421 tttcctgata taattcgaaa ccattcattt tcggcattcg aacatccact aatatcaaat
      481 cataaaaatc tgatttaaaa ttcaatagtg ctgtgacagg gtcgttatat atatcgacca
      541 tgaatccatt gctttctaaa ccctttttga aagcgagagt aatatctatt tcatcgtcaa
      601 ctatcaagat gctccccttt gatgacatcg tctagcttta tggttaggta ttttgcttta
      661 aaatattatc gccaggatat tcggaaatat atgacttgaa gatgtcattt atattatcaa
      721 aattggcttc tcataaaaga ccctttttca gacgatgcgg atttattttg gctctgaacg
      781 ctctgacacc aatacttaat atagagggcc ttcggaggga tttgaaccct cctcaagcgg
      841 tttcttccca gtagctcctt taggagccct cgcccacagc cgcctatact aaccaggcta
      901 tactacgaag gccatcgaac aaatggcagc aattactgta tataattgtt agatgatcgt
      961 tccttaatca aatttagtga attttataat tcttattttt agtttggagg gataattccc
     1021 aatcgtatag tctcaacatc cttatcttct agtctatcag ctaatgcatt taatccgatt
     1081 gaatctcctg ccagatgacc tagaacaata agattgcctt ttaaattttc ctcatacatt
     1141 tttcttagat cgttataatc aatatgtaga tagattatgg ttgaaatttc atgttcaaaa
     1201 tatgctttag caattggaaa ccctccatta gttcctgccg caagaacaag cacccagcgg
     1261 ccaaatttat tttttggact tccatgagca acctttactc ttgtttctgc gtttctgaat
     1321 tcaggaatgt cttcgattga ttttactaca tccaagacaa ggtcatgatt acccgcattt
     1381 atcttatcca agattctttt tctcatatac tcgtcacatg gctggtgaat atttaccaat
     1441 ggcataccaa tgatcctcgc agcgtctatt acgtcattat atatatgcgc atgatttttg
     1501 atctcaattc tattcttcaa gttttttact ctatcttctg ccttgtctgg ggggactcca
     1561 tgctctatca taaattcggc gtgtctatca agtactttgt aaaagttaat tgcagcaggt
     1621 cccaatggat ggtgtgcaat caccgcatcg catcctaaat tttttgcaag taataattcg
     1681 gcagatgtta catcaactgc gatcaaaacc ctcttgattt ttctcccttt aacatgaatt
     1741 gcactatctg gtggtatcct attccaacct acaagtttca gcccaatatt cattatatca
     1801 tcggtgtcaa tcatcataag atagaaacat tcagtatata ttatacatta aaaaatatga
     1861 tcatattacc taagttatta tgggcatagc attttacaga cgcagaagac atcttctata
     1921 ctttaattct gaaattgatt tgaaattgag tttgtttata tgactttaaa aatgtcatgt
     1981 ttttcgttgc aaatctgaca cagacgatat acgatcttta caaagaatat tgcaaatccc
     2041 ttgcatcact tatcgttgca taacgatata cagctaacta aataattcca ttaacgactt
     2101 gatcttccaa ttcagtgtca attcaaacat aaagataatg aagcaaaact atatctatta
     2161 tagagcatga tattatgaac
//
LOCUS       DATABJ010000091         1629 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2024112, whole genome shotgun sequence.
ACCESSION   DATABJ010000091 DATABJ010000000
VERSION     DATABJ010000091.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1629)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1629)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1629
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2024112"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            267..1160
                     /gene="map"
                     /locus_tag="VHF44_01565"
     CDS             267..1160
                     /gene="map"
                     /locus_tag="VHF44_01565"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR00501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="type II methionyl aminopeptidase"
                     /protein_id="HEX2124268.1"
                     /translation="MNFFEYYQQAGRIASQVRENTRNKYLVGNTLFQICESIEADIVS
                     RGGSPAFPVNVSLNEIAAHYTAEPDDQIIVNDGDVLKIDIGVQIHGYIADTAVTVCYN
                     PKYDAMVKTAETALSEAVKAAKPNAKASDIGKIIENTVSKHGFRPIQNLSGHSLEQFT
                     IHAGKSIPNIWTIGSFNLVSNQAYAIEPFVTTRDGQGIVYEGKTRNIFGIASRKPTKD
                     KEADEFLEYIWHTFKTLPFALRWIMDKYEDKKARHLMELLIKKRNVRAYPILVEGNGK
                     IVAQAEHTLIPTNNFINVITL"
     gene            complement(1210..1407)
                     /locus_tag="VHF44_01570"
     CDS             complement(1210..1407)
                     /locus_tag="VHF44_01570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124269.1"
                     /translation="MWFKKKKQVSPTVYTEEICQRCDEKTKRRFEDGDYIYKFGSNCK
                     KCSEVTMIIAIYGEYPIEKQK"
     gene            complement(1408..>1629)
                     /locus_tag="VHF44_01575"
     CDS             complement(1408..>1629)
                     /locus_tag="VHF44_01575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1512 family protein"
                     /protein_id="HEX2124270.1"
                     /translation="KYQIEEIATKFSIPVYAVIVKESVQDAITVMRKEICDSFDKVRD
                     IVYTTIEEKTSERQSVLIIGVGNTVGVAQ"
BASE COUNT          525 a          302 c          277 g          525 t
ORIGIN      
        1 cgaccccact cctaaatcat tttcacgcag cactacccat cagcataatt ttaagtttct
       61 tcaaacagtc aaagatcttt ctatttagag taacatatcg ataaatacaa gttgtttagc
      121 agatgtacga atattttgct ctttcttcta gtatggttac agagatattt gaaatcgaca
      181 cagaaataac gaatagacgc tgcttttttt atggttaggt atttacaata tctctatata
      241 tgttcaaatg cgacaattgc caatatatga atttttttga atattatcaa caggcaggga
      301 gaatagcatc acaagtgcga gaaaatacac gaaacaaata cctcgtaggt aatacgctat
      361 ttcagatttg tgaatctata gaagctgata ttgtaagcag aggaggatca ccggcatttc
      421 ctgtaaatgt cagtttaaat gaaatagccg cacattatac tgctgagcct gacgatcaga
      481 ttattgtaaa cgatggagac gtcttgaaga tcgatatcgg tgtgcagatt catggttata
      541 ttgccgatac agcagtaact gtttgctata atccaaagta cgacgcgatg gtaaaaacag
      601 ctgagactgc cttaagcgaa gcagtaaaag cggctaaacc taacgccaag gctagtgata
      661 ttggaaagat aatagaaaat acagtatcaa agcatggatt cagacctatt cagaacttaa
      721 gcggacattc tttagaacag tttaccatac atgcaggaaa gtcaatacca aatatttgga
      781 ctattggatc atttaacctt gtttccaatc aggcttacgc catagaaccc tttgtgacaa
      841 caagagatgg tcagggcata gtttatgaag gcaagactcg taatattttt ggtattgctt
      901 ctcgtaaacc aacaaaagac aaagaggccg atgaatttct tgaatatatt tggcacacct
      961 tcaaaacctt accatttgct ctgagatgga taatggacaa gtatgaagat aaaaaggctc
     1021 ggcatttaat ggaactatta ataaagaaga gaaatgttcg cgcatatcca attcttgtcg
     1081 aaggaaatgg gaagattgtt gctcaagctg aacatacatt aattcctacg aataatttta
     1141 tcaatgtaat caccttgtaa acttttgtca atggatacat cttcaacctt aggtttcatg
     1201 gttttgtttt tatttttgtt tctctatagg atattcacca taaattgcaa taatcatagt
     1261 gacttcggaa cattttttgc agtttgagcc aaatttataa atatagtctc catcctcaaa
     1321 tcttctctta gtcttttcat cgcatctttg acatatttcc tctgtataga ctgtgggact
     1381 aacttgcttc ttctttttaa accacatcta ttgtgcaacc cctaccgtat ttccgactcc
     1441 aataattaga acagattgcc tctcgctagt tttttcttca attgtggtat atacaatatc
     1501 tcttacttta tcaaatgaat cacaaatctc ttttcgcata accgtaattg catcctgaac
     1561 agattctttt actattacag cataaactgg aatactgaat tttgtcgcga tctcttcgat
     1621 ctgatattt
//
LOCUS       DATABJ010000092         5017 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1593341, whole genome shotgun sequence.
ACCESSION   DATABJ010000092 DATABJ010000000
VERSION     DATABJ010000092.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5017)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5017)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5017
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1593341"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(306..488)
                     /locus_tag="VHF44_01580"
     CDS             complement(306..488)
                     /locus_tag="VHF44_01580"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124271.1"
                     /translation="MNTYIIIMFIVQSLFEVTLLLSIIGKSSALLSDNMSTADGEGRK
                     SLDVVVTVAGVSLFMA"
     gene            1153..2211
                     /locus_tag="VHF44_01585"
     CDS             1153..2211
                     /locus_tag="VHF44_01585"
                     /EC_number="1.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent alcohol dehydrogenase"
                     /protein_id="HEX2124272.1"
                     /translation="MTQVCGFAAQHAKAPLTSYSFKRREPRDHDVVIDIQYSGICHSD
                     IHQVNNGWGGSIFPMVPGHEIIGIVSHVGTNVTRYKVGDRAAVGNFVDSCRKCSSCHK
                     GLEQYCLEGATWTYNAIERDGKTQTQGGYSNKIVVDENYVFQIPDSLPLDRAAPLLCA
                     GITMYSPLMHWKAGPGKKVAIIGLGGLGHIGVKIAHALGAEVSVLSHSLEKEEEAKKM
                     GADKFYTTSDTNTFKKHRGYFDLVINTVSVVLDSNKLLKMLALDGTMVLVGLPENEMS
                     IGAFSLASARRSLAGSAIGGIRETQEMLDFCSKHNIACDIELIPIQKVNEAYERVVKS
                     DVRYRFVIDIANSLKCKD"
     gene            3395..3940
                     /locus_tag="VHF44_01590"
     CDS             3395..3940
                     /locus_tag="VHF44_01590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124273.1"
                     /translation="MISKQFNNIRLSIKKNGNKKNKISIVNCYLKWEDHAREKSYLEK
                     IHNEIIKMPVEKTCESLHKFGYLGYLREEVYDGRSYVMKHLFSEAWSEDNNDSIKEGY
                     CKISSDVLKARLPEAIRITIQREKLKYNKKTRLSRQRQQQQQKKEEENHSPRVKSLKD
                     FVQLFEQKEKEGKNPRIYVSY"
     gene            complement(4200..4499)
                     /locus_tag="VHF44_01595"
     CDS             complement(4200..4499)
                     /locus_tag="VHF44_01595"
                     /inference="COORDINATES: protein motif:HMM:NF017917.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ChaB family protein"
                     /protein_id="HEX2124274.1"
                     /translation="MPNTRSKTKGIKRGSGGGSSRGGKQLSSRTKKQIDSLPEHAQHI
                     YKKTHSNALEQYQSAEKRRGGKKQSAEEVAHKAAWAAVKKEYKKKGNEWVKKEEE"
BASE COUNT         1782 a          811 c          909 g         1515 t
ORIGIN      
        1 aatgatgggt cctggaatga tgggggatcg tgaatatttt gagttgatgg gtcctcctga
       61 aatgttagga taatagagga caataatgaa ttaaaagaat agaataaaca aaaaagaaat
      121 ctctctcatt tttcttaaaa atagtaaaga aacttcttgt ctataatata tgtctttgat
      181 gcaattgtaa cgcccagaaa ataagcctgt aaatacctaa ttgttttaaa ttattttttg
      241 tttactttat atttgacagt ttatgaatta atttaccaat cattttctgc tgctaaaata
      301 tatatctaag ccataaacag tgatactcct gcgactgtaa caactacgtc gagtgatttt
      361 cttccttctc catcagctgt actcatatta tcagacaata atgcagatga cttaccaatt
      421 atagaaagta ataatgttac ctcaaaaagg gactgtacaa taaacattat tattatgtaa
      481 gtattcaaag tcatttcaat atatgatgac actactatta tgattgttat attaaatatt
      541 tatttgattc tttcaactgt aaatcttata atgataagat ctaagtagtt tacaaatgtt
      601 ccttgttata ggtatcatgc tactatccat gatatcaatg gcatcatgaa ataagtctta
      661 taaagctgaa tcatttagag tgcatgcaaa aaatgacagt gactagcact gaagaaggta
      721 agaagcagag attattcaat ctttaatcac gaaaagacaa catatgaaat atcaaagata
      781 gaaaaaatat cactccatgc tatacacact atcttaaatc agaggaagaa accagacgac
      841 aaaaatgtag atatcatcaa tagcaagaag agaaaaggag aagattttgt tatcactctt
      901 ccagaactag tacccttcta tgaatactaa gctaaaaaat acaaacattg ccatgatata
      961 atcaaagcct ggagtgttta gaagaggaat tcttgattta ctagttgctg gtaactcctt
     1021 ctttccttta ttaatgtcgt tacgttggtc ttaactttat gatttcttag ctgacgtatc
     1081 cagtagcctg attacattct taactgggat gaaagaataa ctggacaaca aaggagtagt
     1141 agaaaaaaat tgatgactca agtttgtgga tttgcagctc aacatgccaa agcacctctc
     1201 acttcatact cttttaaaag acgggaacct cgagatcatg atgttgttat cgacattcaa
     1261 tacagtggta tttgccattc agacattcac caagtgaata acggatgggg tggatcaatc
     1321 tttccaatgg ttccaggaca cgagataata ggcattgtct cacatgttgg aacaaatgtg
     1381 actcgctaca aagtaggtga cagggcagct gttggcaact tcgttgattc ttgcaggaag
     1441 tgtagctctt gccataaagg acttgagcag tattgtctgg agggagcgac gtggacttat
     1501 aatgcaattg aaagagatgg aaaaactcaa acccaaggag gctattctaa taaaatcgta
     1561 gtcgatgaaa actatgtttt tcagattcct gacagccttc ccctagatcg tgcagcaccg
     1621 cttctctgtg cgggtatcac aatgtattca cctctgatgc attggaaagc tggtcctgga
     1681 aagaaagttg ccattatagg tcttggtggc ctgggccata taggagtaaa aatcgcacac
     1741 gcactaggtg ccgaagtgag tgtgctcagc cattctcttg aaaaagaaga agaagccaag
     1801 aaaatgggag ctgataaatt ctatactaca tcagatacga acactttcaa gaagcacaga
     1861 gggtattttg acctcgtgat caatacggtt tcagttgtcc ttgattccaa caagctcttg
     1921 aagatgcttg ccctcgacgg gacgatggta ttggttgggc ttcctgagaa tgaaatgtca
     1981 attggtgcct tctcattggc tagtgctcgt cgcagtcttg caggatcggc gatcggaggg
     2041 atccgagaaa cccaagagat gcttgatttc tgcagcaagc ataacattgc ctgcgatata
     2101 gaacttatcc cgattcagaa ggtaaatgag gcttatgaga gagttgtgaa aagcgacgtt
     2161 cgatatagat ttgttataga tattgcaaac tcactcaagt gtaaagatta attgcttagc
     2221 agtaagtaaa cctctctcat aaaccttaaa atgctgttta taagagaaag caataacaat
     2281 aatgtttcat ggcatgttta agttatatta aaacatggca gcaatcaata gaacaataca
     2341 gtgagaagaa atctatgaag aaagtaaatg gtaataagga aataatttag tatcatagat
     2401 gaaagcaagc ggcatcagaa acattccctt ttaagtatcg attatccata ctataagata
     2461 taaatttaat taaatgacaa acgaaaaaaa gcgggttata catctgtatt ttaaccagca
     2521 taaaatctac gctgaaattg cggaaataga aaaatatcac tccatgctat acacactatc
     2581 ttaaatcaga ggaagaagcc agatgacaaa aatatagata tcatcaatag caagaagaga
     2641 aaaggagaag attttgttat cactcttcca gaactagtgc cctttacttc tgtgaatact
     2701 actacttctg atggccgtaa gattagcgat agtaaaaaat gagaagcaaa gtcaacagca
     2761 taaactactg acaaaaaaga aatagtgacc gaacaagaat ttccttaatc ccacatttgc
     2821 aagtaattat gcatttggac agttctatca acagttacca gcaatctttt atgcaaagat
     2881 cgacaagtgt ttgaaatgag ataatagaag aaaacatgaa atcaaaaatt agcaagcaag
     2941 atatctacta tatgtaaaat taacttgata aacaatttgt gtatcggttt tactattatt
     3001 atatcgcata tgaaattact tgactatttc attacttcct gcttaactga tccttaccga
     3061 catgccaaaa taggaggcag tgagaagcaa cagacaatac aacttttgca aaataaaagt
     3121 gctttggaac ctaaatacca atgtcaggta aaattgcatt ctcttttgaa caaatatgca
     3181 agcgtagttt aattagtctg tatactgact gattttcatt ctcaaaaatg acaatcaaag
     3241 atccatttaa ataatatagg aaagaatgtc tgaaaaattg tctgctctta attttgcttc
     3301 agttttcttg caaacaatag taatcatggt aacattatca atcagtattg agagaataga
     3361 tatagaaaat cattttgtat aggtagagaa taaaatgata tcgaaacaat ttaacaacat
     3421 acgtttatct attaagaaaa atggtaataa gaaaaataaa attagtattg ttaactgtta
     3481 tctcaaatgg gaagatcacg ccagggagaa aagttactta gagaaaatac acaatgaaat
     3541 aattaagatg ccagttgaaa agacctgtga gagtttacat aaattcggat atctaggata
     3601 tttaagagag gaagtatacg atggtcgatc ttatgtaatg aagcatttat tctctgaagc
     3661 atggtcagaa gataacaacg acagcataaa agagggatat tgcaaaataa gttctgatgt
     3721 acttaaagcc agactgccag aggctattag aattacaata caaagagaga aacttaagta
     3781 taataaaaaa actagactat cacggcaacg acagcagcaa caacaaaaga aagaagaaga
     3841 aaaccatagc ccaagagtaa aatcgttgaa agatttcgtg cagttgttcg aacaaaaaga
     3901 gaaagagggt aagaatccga gaatttatgt gtcttattag tgacaataga gaagtaaata
     3961 agaagaatct ttcctagtat ttgggatgga agaaaatgat atcactcctt aaggacttgt
     4021 tattaaaaga gtacttgttg attgatccta ctgtaaacaa actcataatg taaattagga
     4081 ttaaattcta tacaagaact ttggagaaag aatagtaacc tcgataagtt acatggcgac
     4141 ctgattgtga cttgtgcact gcttcttttc ctcacataag atattaagat aggggttgtt
     4201 tactcctctt ctttctttac ccattcattt ccctttttct tgtattcttt tttgacagcc
     4261 gcccatgccg ctttgtgtgc tacttcttcg gcactttgct ttttaccacc acgtcttttt
     4321 tcagcgcttt gatattgttc tagagcatta gaatgagttt ttttgtatat gtgctgtgca
     4381 tgctctggca gagaatctat ttgctttttt gtcctagaag atagttgttt accacctcga
     4441 ctacttcctc cacctgatcc tctttttatt ccctttgttt tggaccgagt attaggcatc
     4501 ttctgctaaa actgtagaga ctgatatgat aaaagcatta ttcttaagta ttctcagata
     4561 gtgaatagat aggataggcc aaaaaattga ttgcaatata attgcatatt tgctgagaga
     4621 gggacattga tgcatttgca gtatgacagt atggtttttt cataatctga gtcaagatta
     4681 tataattcta acgtgcagtt tattagccag aattagagag gctctgctaa cttaagcagt
     4741 catattatta tatgagtcaa caaacacatt gatcaactgt taacatgact tagtttacac
     4801 ctttctctct acatggaaag taatcatcaa aatattctat tttgtctttt gtattgaatt
     4861 ctcactctat ctctatgatg ttcttctcaa aagaagactg aagatgaggt tacgaggatt
     4921 atataggcag aattaatata caaagagaca aatggcagat tacaaaaatt tttgaaatta
     4981 tatatacacc taataaagaa aaatcacaaa tctataa
//
LOCUS       DATABJ010000093         1601 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_65704, whole genome shotgun sequence.
ACCESSION   DATABJ010000093 DATABJ010000000
VERSION     DATABJ010000093.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1601)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1601)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1601
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_65704"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..856
                     /locus_tag="VHF44_01600"
     CDS             <1..856
                     /locus_tag="VHF44_01600"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2124275.1"
                     /translation="AAISDLPIKCIILGRVEYYFNPVKNETIYHEVGIEQKEKKLSSN
                     LLQMASDILKIADGLGISGANENTDETLIQYSKLLQSKNNNTEKKKLSAIHAAESKDT
                     NELSKSKTGMTEVYRIMQYLKPDILVHMTNADEEDISIVAKKGTGVIVCPRSNGILGV
                     GIPKVARMLKLGCTIGIGTDNVMLNSPDIFKELDYLWKVSRAIEPEFISPKEILMMAT
                     VNNAKILGLNSGYIENGRSADLLFIDKNHIDLYQIHDPYASIVHRVSQDSIKAVMING
                     KFIDGVDI"
     gene            858..1508
                     /locus_tag="VHF44_01605"
     CDS             858..1508
                     /locus_tag="VHF44_01605"
                     /EC_number="1.1.1.302"
                     /inference="COORDINATES: protein motif:HMM:TIGR01508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone
                     5'-phosphate reductase"
                     /protein_id="HEX2124276.1"
                     /translation="MQVLINAAMTIDGKIATNLGDSTISSKQDLRRLHRLRCSVDAII
                     IGISTVIIDNPRLTVRLVKRHGTTPVRIIVDSIGRIPLDSKILKSASKINTIVAVTKQ
                     ASDERVDKIKSAGAIVIVAGTKTVDLKELFFILKKMGFNKILVEGGGELNWSILQLGI
                     VNELMVTVAPRIVGGRTATTLVEGDGYERISDGIKMELIKMSRQNNGEVVLYYRLL"
BASE COUNT          615 a          215 c          315 g          456 t
ORIGIN      
        1 ggctgcgata tctgatcttc caattaaatg tataatactt ggcagagttg aatattattt
       61 caatccggta aaaaatgaaa ctatatatca tgaagttgga atagaacaaa aggagaagaa
      121 actttcttca aatttactgc aaatggcttc agatatttta aaaatagctg atggattagg
      181 aatcagtggt gcaaatgaaa atactgatga gacacttata caatacagca aattattaca
      241 aagtaaaaat aataatacag agaaaaagaa attaagtgca attcatgccg cagagtctaa
      301 agatacaaat gaattatcca aatcaaaaac aggtatgacc gaagtatata gaataatgca
      361 atatttaaaa cctgacattc ttgttcatat gactaatgcc gatgaagagg atatttctat
      421 agtagcgaag aaaggaacag gagtaatcgt atgccctaga tcaaatggaa tactaggagt
      481 cggtattcca aaagttgcaa gaatgttaaa actaggatgc actattggca taggaacaga
      541 taatgttatg cttaattctc ctgacatctt taaggaattg gattatctat ggaaggtatc
      601 aagggcaata gaaccagaat tcattagtcc taaagaaata cttatgatgg ctacagtaaa
      661 caatgctaaa atccttggcc ttaattctgg gtatatagaa aatgggcgat cagcagatct
      721 tttatttata gacaagaatc atattgatct ctatcaaatt catgacccct atgcctcaat
      781 agttcataga gtgagtcagg attccattaa agctgtgatg attaatggca agtttataga
      841 tggagtagat atctaatttg caagtactga taaatgcagc tatgacaatt gatggcaaaa
      901 ttgcgactaa tcttggagat tctacaattt cttcaaaaca agatttaaga agacttcata
      961 gattgcgatg ttctgttgac gcaattatta tcggaatatc aactgttatt atagataatc
     1021 caagactcac ggtaaggctg gttaaaagac atggaacaac ccctgtgaga ataatagtag
     1081 acagcatagg gagaattcct cttgattcaa aaattctaaa gagcgcatct aaaatcaata
     1141 caatagtagc agtaacaaaa caagcatctg atgagagagt tgataaaatt aagagtgctg
     1201 gtgcaatagt gattgttgca ggaacaaaaa ctgttgactt aaaagagcta ttttttattc
     1261 ttaaaaagat gggatttaat aaaatactcg ttgaaggagg tggagaatta aattggtcta
     1321 tcctacaatt aggaatcgtg aatgaattaa tggtaacagt cgcacctaga attgtaggcg
     1381 ggagaacggc tactacatta gtagaaggag atggttatga aagaatctca gatggtataa
     1441 aaatggaatt gataaagatg tcaagacaaa ataatggaga ggtagttttg tattataggt
     1501 tgttatgata aggctataca ggtaaatcca aataatgcta taccatggaa tggtaaagta
     1561 ctctaaaagt atagatcatg ttacatttaa gatttccaaa c
//
LOCUS       DATABJ010000094         1867 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_942901, whole genome shotgun sequence.
ACCESSION   DATABJ010000094 DATABJ010000000
VERSION     DATABJ010000094.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1867)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1867)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1867
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_942901"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            200..718
                     /locus_tag="VHF44_01610"
     CDS             200..718
                     /locus_tag="VHF44_01610"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2124277.1"
                     /translation="MKEDLLHSHQTGVTVRNTFPEDITKIVDLQKESFPYLARYGNIW
                     HPEELESHLRIFPEGQFVAVEPDGTVVGSASTLIVSLNAEYTEHTWKEITANGMFTNH
                     NPHGDSLYGADISTHPKYRHEGIGSMLYDIRKKLVIRLNLRRIIGGGRLFNYCEYADK
                     MSASEYAQKVIR"
     gene            1424..>1867
                     /locus_tag="VHF44_01615"
     CDS             1424..>1867
                     /locus_tag="VHF44_01615"
                     /inference="COORDINATES: protein motif:HMM:NF016115.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004061 - arylformamidase activity
                     [Evidence IEA];
                     GO_process: GO:0019441 - tryptophan catabolic process to
                     kynurenine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclase family protein"
                     /protein_id="HEX2124278.1"
                     /translation="MKVVDLTLGISANIKVFPGSPQPSFIKWSRYDVHGYDSEVMFLS
                     THTGTHMDAPSHFISGTATIDKIEIDRFICNNALLLKIEKKSNQTISRDDIIVGEEIK
                     ENDTIVFFTQWASQIEKDNYISENPGLSTDAAEYLVEKKVNAVAID"
BASE COUNT          659 a          303 c          315 g          590 t
ORIGIN      
        1 tttcagtata gtcatgctag gatatgttta gctgcataac ctgactctca gagaactaaa
       61 atactaatgt tgcaaactag ctagtaccat aaccaattac tactatctag tttgcaagta
      121 gaactttcag agtgtatttt ctgctaatat aatacacaac cttatatctg actagtctaa
      181 taaaaacacc ctatacatta tgaaagaaga tttattgcac tcacaccaaa ctggagtaac
      241 agttagaaac acgtttcctg aagatattac aaaaatagtt gatttacaaa aagaatcatt
      301 tccatatctt gcacgctatg gaaatatatg gcatccagaa gagctagaaa gccatcttcg
      361 tatttttcca gaaggacaat tcgttgctgt cgaaccagat ggcacagttg ttggttctgc
      421 aagcactctt atagtttcac ttaatgctga atatactgaa catacatgga aggagattac
      481 agctaatggt atgtttacaa atcataatcc ccatggcgat agtctttatg gtgcagatat
      541 ctctacgcac ccaaaatata gacatgaggg cataggaagt atgctatatg atatacgtaa
      601 gaaattagtc attagattga atttaagaag gataatagga ggaggaaggt tgttcaatta
      661 ttgtgaatat gcagacaaga tgtctgcatc agaatatgct cagaaagtaa ttagatgaga
      721 attcagagat cccgtgctct cttttgagtt agataatgga tttaaattta taaagatact
      781 tcctaactat ttggatgatg tccgttctct aaactatgcg agttttatag agtggctaaa
      841 tccaagatac agtcgtagtc cgtaatatag tacaaaatag atgttttgtg ataataatat
      901 tatcaaattg gcagatgtgt aataagagga tctacaggaa gctcatcgta gatgtgaggt
      961 ttttcagaat tcttttctac tggtacaaca tgcttcaata ctccaactag agatttataa
     1021 ttccatcatc aattattctc atccttctaa agtaattgga tttacttcat cctctgatga
     1081 ggaatttact gtgcctagat gttctattca tatagcagtt ctagacagat aaacatagtg
     1141 agaaaaaagc aacaaaaaat tgataataaa tatattcata atcacttacc gactaaaatc
     1201 acaactctgc tagtatctag taataactaa actttgacta tcatatatag gaagagagag
     1261 attgctgaac gttaacttaa ttataattgc agccttttaa cttcttagtg ttatatcttt
     1321 atgatatgat tgatacaatt attgtcatct caagcttatt tacttgacac gatatcattt
     1381 gcaagccagc taatataata cttattaatt agatataata tttatgaaag tagtagacct
     1441 tacacttgga atttccgcaa acataaaagt ctttccaggt tctcctcaac cttcttttat
     1501 caagtggtca agatatgatg ttcatggata tgattctgaa gtcatgtttt tgagtaccca
     1561 cacaggaact cacatggatg caccttctca ctttatatca ggtacagcaa ctatagataa
     1621 aatcgaaatt gaccgattca tttgcaataa tgcattattg ctaaaaattg aaaagaaatc
     1681 taatcaaaca attagtcgcg atgatataat tgttggtgaa gagataaaag aaaatgatac
     1741 aatagtattt tttacacaat gggcaagcca gattgaaaaa gacaattaca tatcagagaa
     1801 ccctggactg tctacggatg ctgcagaata tcttgtagaa aagaaggtta atgccgttgc
     1861 aatagac
//
LOCUS       DATABJ010000095         3526 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_943029, whole genome shotgun sequence.
ACCESSION   DATABJ010000095 DATABJ010000000
VERSION     DATABJ010000095.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3526)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3526)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3526
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_943029"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..516)
                     /locus_tag="VHF44_01620"
     CDS             complement(<1..516)
                     /locus_tag="VHF44_01620"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEX2124279.1"
                     /translation="MNKAWAFSPSLYLLNHPAPEIILIGLLSITAVLTLSSFVLQPSF
                     SSVIVSYGNNGTARSNCDCVVFRMDDIQDYWIRSAQLATMNQFIDRNQSLTLGIIMNG
                     TGNDTEIVKKVREGHDIGLFELAVHGWNHTDYTKLSEEEQRSSMNDANRKMSALFGNA
                     SEIFIPPLNAFN"
     gene            complement(1008..2456)
                     /locus_tag="VHF44_01625"
     CDS             complement(1008..2456)
                     /locus_tag="VHF44_01625"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2124280.1"
                     /translation="MKNKKKSLAIVIILSILASFCLAASLAILLGVNILSLSILAVAA
                     LTSGYLMMLFKRRNDLRPGSRRIQIPFILFGILVIPVVVTVSILLIYSYELHLVLVSL
                     MMPLTFINVMFYLPIAVYDKFFNSPVHNRVLASLPIISIIVPAYNEAANIRHTLDSIL
                     ESDYPAKEIIVVDDGSRDLTYAVATQHMQTHKQCTIRVIRKQNGGKASAMNYGLQFAS
                     GEIVVIVDADSLIEKNTLRDIAKEFQRPDVVAVAGTVKVLNPVNILTHCTALECVAVP
                     NLQRPAFSLLGIVMIVPGALGAFKRKRIMQCGLYDRDTITEDFDLTIKVAKGGGKIVA
                     IPAISYTECPTTLKGFYKQRIRWYGGVFQGLLKHNNAMMSSRYGMLNRLGYPITLLMF
                     IVPPFLDIVVIAFTILAIVGGLPMSYLIAFSLFFAFQFFLSGIAIMIDKNRPWNLIFY
                     APFSIFGYKQINNFIVIKSIFDVIVQGRNMKW"
     gene            complement(2453..>3526)
                     /locus_tag="VHF44_01630"
     CDS             complement(2453..>3526)
                     /locus_tag="VHF44_01630"
                     /inference="COORDINATES: protein motif:HMM:NF037270.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124281.1"
                     /translation="FQYVFPNYSSDSKMTLASQSIKKPFENIELSKLLNRLREKNSSI
                     ANVFRLPVRLEPSFRPGRGFFYPDIELATLEEQTSFLESIGKMDIVTRNPSVSIMQCP
                     YCSSHTFCSTFVCKLCRSPNILRGSAISHEPCGNIDFYDKYVTDDGTLLCPKCNKNLK
                     AIGIDYSKLDLIYNCLNCKAMLSDIVQSYKCLHCGKSSTLEESRILLLNEYIFDVDKL
                     SNILNIDKSLLSVIKELDNIGIKAVYHGAVTGASRMSHIFYLVVYAEKVERPFLVADI
                     IETDHKTDEMRLLSYIGKCVDTRIENKVIVAVPNLEEEGLRELVVANGIMLVESRSRE
                     DITLDLVKAIKQIHDTRFAKIKG"
BASE COUNT         1136 a          668 c          631 g         1091 t
ORIGIN      
        1 gttaaaggcg ttaagtgggg ggatgaatat ttccgaagca tttccaaata atgcactcat
       61 ctttctgttg gcatcattca tagaacttct ttgctcttct tcactcagct ttgtataatc
      121 agtatgattc catccatgca cggctagctc gaaaagtcct atatcatgtc cttctctcac
      181 tttctttact atttcagtat catttcctgt gccgttcatt attattccaa gcgtcaagct
      241 ttgatttcga tcgatgaact gattcatggt tgctagctga gcggacctga tccaataatc
      301 ttgaatatca tccattctaa atacaacaca atcacaatta gagcgagcag taccattatt
      361 tccatatgat actatcacag aagaaaatga aggctgtaaa acaaaactgc tcaaagttag
      421 tacggcagta attgacaaaa gtcctatcaa aataatttca ggtgctggat gattaaggag
      481 atatagcgaa ggtgaaaaag cccaggcttt gttcatggat atgcaggcag taatgagggg
      541 atttcaacat atatttgtct ctttatgaat gagtagagaa aatggacaaa tatcttaaga
      601 tgaggtgatt ttaatttcaa aaatccccaa gttggagaat tgaagcagtg ctcaccggat
      661 atgagatacc cagatttcct tctacctgtt gcattgatag aaattgttgt atcaattttc
      721 ctttcctaag agactgaatc caacttaacg gccaaatgct cagcgtaaga atatgaagat
      781 gtgccgcttt gttgatagat acatagcatt gtaggatatc acgcgagaaa agaacgacat
      841 gcttttggtt ctttgcgagt cactcatgct aaatcatatt tagtagagag aaaaaataat
      901 atcagcaagt atatacacta acaatatcag ctgatcgtca gattcataaa caagatgaga
      961 tattttagct cataattata tcagtaattt aaaaactgat attctcttta ccatttcatg
     1021 tttcttcctt gcactattac atcaaaaata ctttttatga caataaagtt gttaatctgt
     1081 ttatacccaa aaatactaaa tggcgcataa aaaataagat tccacggcct atttttatct
     1141 atcataatgg caatgccaga tagaaaaaac tgaaaagcaa aaaatagcga gaatgcgatt
     1201 agataggaca taggtaaacc tcctacaatt gcaagaatcg tgaatgcaat aactacgata
     1261 tcaagaaagg gaggaacaat aaacatcaat aatgtaatcg gatatccaag cctatttaac
     1321 atgccatatc tgctgctcat catggcatta ttatgcttta aaaggccttg aaaaactccg
     1381 ccgtaccagc gaattctctg cttataaaag cccttaagag tagtcggaca ttctgtatat
     1441 gaaatcgcag gtatggcgac tatttttcct cctcctttag caacttttat tgtaaggtcg
     1501 aaatcctcag taattgtatc tctgtcatat aatccacatt gcattatcct ttttctctta
     1561 aatgccccta gcgcaccagg tacaatcata actatgccca atagactaaa tgctggcctt
     1621 tgtaaatttg gtacagcgac acattctaaa gcagtgcagt gtgttagaat attaacagga
     1681 tttaagactt tgacagttcc tgcaacagca acaacatcag ggcgttgaaa ttcttttgca
     1741 atatctctca atgtattttt ttctatgaga gaatcagcat ctacaataac aacgatttcg
     1801 ccagatgcga actgtaatcc ataattcata gctgatgcct ttccaccatt ctgctttcgt
     1861 ataaccctaa tcgtgcattg tttatgagtc tgcatgtgct gtgttgctac ggcataggtc
     1921 aaatctcttg acccatcgtc tacaacaatt atctcctttg cggggtaatc agattcaaga
     1981 atagaatcta gagtatgtct aatgtttgcc gcctcattgt atgctggtac aattatcgaa
     2041 ataattggga gggacgccaa tactctatta tgcacaggac tattgaaaaa tttatcataa
     2101 actgcaatag gtaaataaaa cataacattg atgaaggtta atggcatcat aagggaaaca
     2161 agaaccaagt ggagttcata ggaataaata agcaggattg acactgtaac gactacagga
     2221 ataaccaaga ttccaaagag aataaatggt atttgaattc ttcgagagcc aggtcgcaag
     2281 tcattgcgtc ttttgaacaa catcatcaga taaccggacg taagtgcagc gacagctaaa
     2341 atactgaggg atagaatgtt tactcccaaa agtatagcta gggatgctgc tagacagaat
     2401 gaggcaagta tgcttagaat tattacgatg gcaagggatt tcttcttgtt tttcatccct
     2461 taatctttgc aaacctcgtg tcgtgtattt gtttgatagc cttaacaaga tccaaagtta
     2521 tgtcttctct agaccttgat tcgactaaca ttattccatt agcaacaact agctctctca
     2581 agccttcttc ctccaagtta ggcaccgcaa cgataacttt gttttcaatt cttgtgtcga
     2641 cacactttcc aatataagat agaagacgca tttcatccgt tttatgatca gtttctatga
     2701 tgtcggcaac taaaaatggt cgttctactt tttcagcata tacgactagg taaaaaatgt
     2761 gtgacattct tgaggcacct gtaactgcgc catggtagac tgctttgatt cctatattat
     2821 ctaactcttt aatcacggaa agcaaagatt tatcaatatt taatatattt gacaatttat
     2881 ccacatcaaa tatatattca ttcaacagca aaattcgaga ttcttccaaa gttgaagact
     2941 ttccgcagtg aagacatttg taggactgaa ctatgtccga tagcatagct ttacagttca
     3001 ggcaattgta aatgaggtcc aattttgaat aatctatacc aatggctttt agattcttat
     3061 tgcactttgg gcatagcagt gtcccatcgt cggtcacata tttatcataa aaatcaatat
     3121 tgccacaggg ctcgtgtgaa attgctgatc ctctcaagat attaggcgac ctacaaagtt
     3181 tgcaaacaaa tgttgaacag aatgtgtgag aactacaata agggcattgc attattgaaa
     3241 cggaggggtt gcgtgttact atgtccattt ttccaattga ttcaaggaaa cttgtttgct
     3301 cttctagcgt agctaattca atatcaggat agaaaaatcc cctaccagga cggaatgatg
     3361 gttccaacct gactgggagg cgaaagacat ttgcgataga actattcttt tcccttagcc
     3421 tgtttaataa ttttgataat tcaatatttt caaaaggctt tttgatagat tgactggcta
     3481 aggtcatctt cgaatcactg ctgtagttag gaaaaacgta ctgaaa
//
LOCUS       DATABJ010000096         2950 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_508122, whole genome shotgun sequence.
ACCESSION   DATABJ010000096 DATABJ010000000
VERSION     DATABJ010000096.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2950)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2950)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2950
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_508122"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            452..949
                     /gene="rimI"
                     /locus_tag="VHF44_01635"
     CDS             452..949
                     /gene="rimI"
                     /locus_tag="VHF44_01635"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020265495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008999 -
                     peptide-alanine-alpha-N-acetyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0036211 - protein modification process
                     [Evidence IEA];
                     GO_process: GO:0042254 - ribosome biogenesis [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HEX2124282.1"
                     /translation="MQTALRRVGDYVIRHCEEKDLVSVIDINMITLPEHYSDYFFESI
                     LRELPEAFIIAEINDKIIGYIMCKIEFGFSNFRKLGFVKKGHVVSVAVLPEHRGKGLG
                     KALMLEGINGVMHRKSDEIYLEVRKSNESAIKMYQKIGFQIKSKLRAYYRDGEDAYLM
                     ALEFG"
     gene            965..1207
                     /locus_tag="VHF44_01640"
     CDS             965..1207
                     /locus_tag="VHF44_01640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124283.1"
                     /translation="MTSEIYAPMKNKRRGSRIAGYTLLVTSILAFIIYSYLLLNTDLG
                     ILILQLTVLAAIAALLAVLAWIGYTMATAPTHQEDR"
     gene            complement(1212..2057)
                     /locus_tag="VHF44_01645"
     CDS             complement(1212..2057)
                     /locus_tag="VHF44_01645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase family
                     protein"
                     /protein_id="HEX2124284.1"
                     /translation="MAYILKKILSEVLTQDEISQVCSAFDMIGSIVIVKIPDPLKLKK
                     QIIGETILHCIKPAKSVFAQTSAVQGDYRIRSLEFIAGEYNTITEYKEHGCKFRVDIK
                     NTYFSPRLSTERLRIAKLTSENEVIVNMFAGVGTFSIIIAKMNKTCKIYNIDCNPFAN
                     EMSIINAKLNRVQNRVLPICGNAKDVIHDQIRGQCDRVLMPLPERSSEFVDSAVLALK
                     DGRGVIHFFVHVKANSKNTAIEKADSDIQTVFNKYRYEILHTRIVREVGPRVYQIVSD
                     ICISP"
     gene            complement(2061..2876)
                     /locus_tag="VHF44_01650"
     CDS             complement(2061..2876)
                     /locus_tag="VHF44_01650"
                     /inference="COORDINATES: protein motif:HMM:NF012235.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEX2124285.1"
                     /translation="MDIRSSIDDMIMDIPVAHYSDIAKSFLSFNLKISAGKIRQGEIV
                     GIIGANALGKTTFMRMLAGVDKPDSGNIDIAARISYKPQYLNQDYDGDVRSLLYTAYQ
                     NAIEGSPVEEQILSPMEIKKLYDKNVKNLSGGELQKVAVAASLMRQADIYALDEPSAF
                     LDVEDRITLAKFLQRFVRSQSKSAVIIDHDMQLIDIVADTLIIFEGIPSIKGMTSNPM
                     SKENGMNHFLKSLAITYRRDEITGRPRLNKEGGRLDRAQKSTGDYYFVKKSST"
BASE COUNT          919 a          522 c          495 g         1014 t
ORIGIN      
        1 aaaaaataat aaagttctag cagtttcaga tggtgaccta atattattaa agactaaatc
       61 gtagcgagat atatatgtat atacttatat gtatacctac gggatatagt tttgttatca
      121 tagggattcg ttcatttcat ctttgttcaa taaataaaaa ttctatcatg gacaacatct
      181 taatgaattg ggtgtcattt ttaatatgtg atatgattta accaagtagg agatatatat
      241 gtaacaataa acaatgaata cttttcgaat acaagtttag taccataata gatcataatg
      301 taatttctta ttgaattaga taataaaggc gaatgacata gtcaataaag attatccgaa
      361 tctataacac attattctca ctttttataa caaaaattca caatgaactg tttgataaga
      421 ttaaataatt tgttctgtca tattttacta attgcaaact gcactgcgaa gagtaggtga
      481 ttatgttatt aggcattgcg aagagaaaga tcttgtatca gttattgaca ttaatatgat
      541 tacgcttcca gaacattatt ctgattactt ttttgaatct attttaagag agttacctga
      601 ggcatttatc attgcagaaa ttaatgacaa gatcataggc tatattatgt gtaaaattga
      661 atttggattt tctaatttta gaaaactagg atttgtaaag aaaggtcatg tggtttcagt
      721 tgccgtatta ccagagcatc gaggcaaagg cctaggaaag gctttgatgc ttgaggggat
      781 taatggtgtc atgcatcgaa aaagtgacga aatttaccta gaggttagaa agagtaatga
      841 atcagcgatc aaaatgtacc aaaagattgg ctttcaaata aaatctaaat tacgtgcata
      901 ttatagagat ggagaagatg cgtatctcat ggctttagaa tttggctaaa gacatccaat
      961 aaatatgacc tcagaaatct atgcacctat gaaaaataaa agaagaggta gcaggattgc
     1021 cggctatact ctcttagtta cctctatcct tgcatttatt atttactctt accttttact
     1081 taacactgat ttaggcatat taattctaca actaaccgtt cttgccgcaa ttgctgcttt
     1141 gcttgcagtc ttggcttgga taggatacac gatggcgacg gctccaacac atcaagaaga
     1201 tcgctgatat cttatggact tatacagata tcagatacta tctgataaac cctaggaccc
     1261 acttctctaa ctattcttgt atgaagaatc tcatatcgat atttattgaa tacagtttgt
     1321 atatcagagt ctgccttttc tatggctgta ttcttagagt tagcctttac gtgtacaaaa
     1381 aaatgaataa ctcctcttcc gtcttttaat gccaaaactg cagagtcgac aaattcactt
     1441 gatcgttctg gcaatggcat cagtacccta tcacattgac ctcggatttg atcatgaata
     1501 acatctttcg catttccgca aatgggcaac accctatttt gtaccctatt cagtttagca
     1561 ttgataatag acatctcatt ggcaaaagga ttacaatcta tgttgtaaat tttacatgtc
     1621 ttgttcatct ttgcaattat aatggaaaat gttccgactc cagcaaacat atttacaata
     1681 acttcgtttt cagaggtgag ctttgctatt cgcaatcttt cagtagacaa tctaggagaa
     1741 aaatatgtat tttttatatc gactcgaaac ttacacccat gctctttata ttctgttatt
     1801 gtattatatt caccagcaat aaattccaga ctacggattc gataatctcc ttgaactgca
     1861 gaagtttgtg caaaaacaga ttttgccggc ttgatgcaat gaagtattgt ctctcctatt
     1921 atttgctttt ttaacttcag aggatcaggg atctttacta ttacaatact gcctatcata
     1981 tcaaaggccg agcatacttg ggatatctcg tcttgtgtta atacctcact caaaattttt
     2041 ttaagaatat aagccatagg ttacgtagag gatttcttta caaaataata atcgccagta
     2101 cttttttgtg ctctgtcaag tctacctcct tctttattaa gccggggtct gccagtaatt
     2161 tcatctcttc tatatgttat agccaaagat ttcaagaaat gattcattcc attttctttg
     2221 ctcattggat tactagtcat tccttttata gatggaatgc cttcgaaaat aattagggtg
     2281 tctgcgacta tatctattag ctgcatatca tgatctatta ttaccgctga cttactttgt
     2341 gatctaacga agcgttgaag gaattttgcc agtgtaattc tatcttctac gtctaggaac
     2401 gcagatggtt catccaatgc ataaatatca gcctgtctca tcaatgacgc tgctacggct
     2461 accttttgca attcccctcc actaagattt ttgacatttt tgtcgtataa tttctttatt
     2521 tccattggac ttaagatttg ctcttcgact ggagaacctt ctattgcatt ttgatatgca
     2581 gtatacaata atgagcgcac atcgccatca taatcttggt taagatattg aggtttatat
     2641 gaaattcttg cagcaatatc aatattacca gagtctggtt tgtccactcc tgctagcatt
     2701 ctcatgaatg ttgtcttacc caatgcattg gcgccaatta ttccgacgat ttctccttgc
     2761 cttatcttac cagcagaaat tttgagatta aatgacagaa aagactttgc gatatccgaa
     2821 taatgagcga caggaatgtc cataatcata tcatcgattg aacttcttat gtccaacctg
     2881 aagggtttct ccctgcagag aatgtgcgat ttagagagaa atccttcagg ttggacataa
     2941 gaagttcaat
//
LOCUS       DATABJ010000097         1553 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1161124, whole genome shotgun sequence.
ACCESSION   DATABJ010000097 DATABJ010000000
VERSION     DATABJ010000097.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1553)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1553)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1553
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1161124"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            154..783
                     /gene="pyrE"
                     /locus_tag="VHF44_01655"
     CDS             154..783
                     /gene="pyrE"
                     /locus_tag="VHF44_01655"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004588 - orotate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEX2124286.1"
                     /translation="METNFVLEMALFLLKSDSLKFGLYTLASGKQSSYYIDLRILQSF
                     PRYFRLTIIALRDLITREIGSDFGSLGSIPTSGLIFASALSYEMLKPLIYVRKESKMY
                     GRRKMVEGYLRPGEKVLLVDDVATTGTSLSNTIKVIRENGAIVKDAVAIISRLEGAEE
                     KLQKIGVRLISIATINDLINALHDKGLLDRNSLEEIIKQKADQGGLETD"
     gene            complement(780..1343)
                     /locus_tag="VHF44_01660"
     CDS             complement(780..1343)
                     /locus_tag="VHF44_01660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TATA-box-binding protein"
                     /protein_id="HEX2124287.1"
                     /translation="MPQTKPIVSIENVVASATINQTVNLNLITQIFPDVEYHPDQFPG
                     LVFRLKAPKTATLIFSSGKMVCTGAKSEEQAIKAVKNVVQKLKKGGIPIEHEPQIEIQ
                     NIVASASLGGKIHLELAARVLPRSMYEPEQFPGLIHRMLDPKTVILLFASGKLVCTGA
                     KKESEVYRAVHNLHTLLEEKNLMIYEG"
BASE COUNT          496 a          254 c          299 g          504 t
ORIGIN      
        1 aatactggat agtccgatga cacatgtttg agcagatttt cgaatttaat gtcaagaact
       61 atatctgtac taccatattt gagccatatc tctggcattg ccaataattg atgatcagtt
      121 aaaataaatc tgtttcatat cgataagaac agcatggaga caaattttgt tttggaaatg
      181 gcgttgttcc ttcttaagag tgactcatta aaatttggac tatatacatt agcaagtggc
      241 aagcaaagct cctattacat tgacttgaga attttacaaa gcttccctag gtatttccgt
      301 cttacaataa ttgccttacg agatctcata accagagaaa ttggttcaga tttcggttct
      361 cttggatcca ttccaacttc tggactaata tttgcctctg cattaagtta tgaaatgcta
      421 aaaccgctaa tctacgtaag aaaagaatct aaaatgtatg gtagaaggaa aatggtagaa
      481 ggctatttga gaccaggtga aaaagtatta ctagttgacg atgtggcgac aactggaaca
      541 tctttgagta ataccatcaa agttattaga gagaatgggg ccattgttaa agatgccgtt
      601 gctatcataa gtaggcttga aggagcagaa gagaagttgc agaaaatagg tgtaaggctt
      661 atttcgatag ctacaatcaa tgacttgatt aatgctttgc atgataaagg tctactggat
      721 agaaatagtc tagaagaaat aataaagcaa aaagcagacc aaggtggatt agaaacagat
      781 taaccttcat aaatcattaa attcttctct tctaataatg tatggagatt atggacggct
      841 ctatacactt cactttcttt cttggcacct gtgcaaacca acttaccact agcaaataac
      901 aatattactg tctttggatc taacattcta tggattaacc ctgggaactg ttcgggctca
      961 tacatactcc gaggaagaac cctggcggca agctcaaggt ggatttttcc gccgaggctt
     1021 gctgacgcca caatattttg tatctctatt tgaggttcgt gttctattgg gattcctcct
     1081 ttttttaatt tttgaacaac attttttact gctttgatcg cttgctcctc agactttgcc
     1141 ccggtgcata ccatcttacc ggaactaaaa attaaagtag ccgttttagg tgctttcaat
     1201 ctgaaaacga gtcctggaaa ttgatctgga tgatattcta catcaggaaa aatctgagtg
     1261 attaaattta agttgacagt ttgatttata gtcgcagaag caacgacgtt ctctatgctt
     1321 actatgggtt tggtttgcgg catattgaaa tgcctttata aaggcgacat atatatatct
     1381 gtagagctat cgtttatagt agatttaact agaggtttaa aaatgcttta taatttttag
     1441 atcgaaaatt tcaattaata tgtataaatt tgaacctaga aagaggctgt aagttgatgt
     1501 tatttttata atattcgttg aaaacaatgt gaaggtatat tatcttaaga cag
//
LOCUS       DATABJ010000098         3407 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_509733, whole genome shotgun sequence.
ACCESSION   DATABJ010000098 DATABJ010000000
VERSION     DATABJ010000098.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3407)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3407)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3407
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_509733"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1115)
                     /gene="ftsY"
                     /locus_tag="VHF44_01665"
     CDS             complement(<1..1115)
                     /gene="ftsY"
                     /locus_tag="VHF44_01665"
                     /inference="COORDINATES: protein motif:HMM:TIGR00064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003924 - GTPase activity [Evidence IEA];
                     GO_function: GO:0005047 - signal recognition particle
                     binding [Evidence IEA];
                     GO_process: GO:0009306 - protein secretion [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEX2124288.1"
                     /translation="MFDKLRKAFSSAAKTIAQKELSEKDLDNNLFDLQLALLESDVAQ
                     EVIDDLSARLKKELLGLKLERGQIAEDIIRSKLHNAIGEMLARCGKIDLIEKIKEKRE
                     TKRGPFVIVFLGINGTGKTTTVAKISNLLRKNGISVVLAAGDTHRAGAIEQLSQHAKK
                     LSLKIIMQRYGSDPSAVARDAVEYSGKHHVDAVLIDTAGRMQTAKNLMDEISKIVRVS
                     KPDLKLFIGDSLAGNDTINQAREFFHYTNFDGAILTKADADSKGGAALSIAYITSKPI
                     VYLGVGQGYEDIIPFNPAKFLESIFGNAPIIDVETSRTSTFTNAPATSESITEISSLP
                     SNIESEVTTIPNIFNESETPSISVRATQAKDIKKERMP"
     gene            complement(1129..1665)
                     /gene="pfdA"
                     /locus_tag="VHF44_01670"
     CDS             complement(1129..1665)
                     /gene="pfdA"
                     /locus_tag="VHF44_01670"
                     /inference="COORDINATES: protein motif:HMM:TIGR00293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0006457 - protein folding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="prefoldin subunit alpha"
                     /protein_id="HEX2124289.1"
                     /translation="MTDELRNQQQAASIEQKINELVQQSRVLEAYMNDNISREATVTR
                     LLEEARLASNAIQNVPTDSEVESFMPVGIGVYIKALVPPVKKLLINIGADVTIEKSKE
                     DAINYIESKIKEFEVALRQLVSQKEQISMRMEQIQRQVNQMLQKGGSSATGTSGDGSQ
                     ASHHTQQRSRDTGQQHTH"
     gene            2150..2977
                     /locus_tag="VHF44_01675"
     CDS             2150..2977
                     /locus_tag="VHF44_01675"
                     /inference="COORDINATES: protein motif:HMM:NF016312.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-aminoacyl-tRNA deacylase"
                     /protein_id="HEX2124290.1"
                     /translation="MEYSYFTLVASKQDSASMTMANYLIHDKDFSVYDKKNNNEEYTS
                     QVYKKIKLHISHESLLYIEDLDTKYPHSKAFIFISKHRSESRIPTLTCHCTGNFADNP
                     YGGNVRELAISYPYLQKRYLKEINNSKLALSYYQIVIEASHHGPTSLKKPVLFIEIGS
                     TERQWIDRNAASLVCNCLLGVLINGLGQCEKVGICLGGTHYPSKFNNLLLESEFGLAA
                     VAPKHNLESVDKDMLNQMIVKSIETVTHIIVDWKGLGKEKNRIMGLVEDTGLEVLRV"
BASE COUNT         1063 a          595 c          577 g         1172 t
ORIGIN      
        1 ggcattcttt cttttttaat atcttttgct tgcgttgctc gaacagatat agacggtgtt
       61 tctgactcgt tgaatatgtt tggtattgtt gttacttccg attctatatt ggatggtaat
      121 gatgaaatct ctgtgattga ttcagaagtg gccggtgcat tagtaaaagt agatgttctt
      181 gaagtctcta cgtcaattat tggagcatta ccaaatatag attcaaggaa cttggcagga
      241 ttaaagggaa ttatgtcctc atatccctga ccgactccaa gatagacaat aggtttggat
      301 gtaatatatg caatagaaag cgcagcacca ccttttgagt ctgcatctgc tttagttaaa
      361 atggcgccat caaaattagt atagtgaaaa aattctcttg cttgattgat ggtatcattc
      421 ccagccagag aatcacctat aaataatttc agatccggtt tagataccct tacaatttta
      481 ctaatttcat ccattaaatt cttggcagtc tgcatcctac ctgccgtatc aatcaatacc
      541 gcatcgacat gatgttttcc actatactct actgcatctc ttgccactgc tgaagggtct
      601 gatccatatc tttgcatgat gatctttaac gataattttt ttgcatgctg gcttaactgt
      661 tcaattgcac ctgcacgatg ggtgtctcct gctgccaaaa ctacagaaat cccattctta
      721 cgtaacaaat tagatatctt tgcgacagtc gtagttttac ctgttccatt gattcccaaa
      781 aatacaataa caaatggtcc gcgttttgtt tccctctttt ctttgatttt ctctattaga
      841 tctatctttc cacatctggc aagcatttca ccaatagcat tgtgaagctt tgatctgata
      901 atatcctctg caatctgtcc tctttccagt ttcaaaccta ataattcttt tttcagtctt
      961 gccgaaagat catcaattac ttcctgtgca acatcgcttt ctaacaaggc aagttgtaag
     1021 tcaaataagt tattgtccag atctttttca gaaagctctt tttgagctat ggttttggct
     1081 gcacttgaaa aggctttcct gagcttatca aacatatact tatttcgcct aatgtgtatg
     1141 ttgttgtcca gtatcacggg aacgttgttg ggtatgatgt gacgcttggg agccgtctcc
     1201 agaagtacca gtcgcagaac taccgccttt ttgtaacatc tggtttactt gtcgttgaat
     1261 ttgttccata cgcattgata tttgttcttt ttggctaaca agctgcctta aggcaacttc
     1321 aaattcctta attttagatt caatatagtt aatagcatct tctttacttt tttctatagt
     1381 aacatctgca cctatattta tcagcaattt tttcactggt ggaactaagg cttttatata
     1441 aactccaatt ccaacgggca taaatgattc aacttcagaa tcggttggaa cattttgaat
     1501 agcattagaa gccagtcgtg cttcttccaa taatcgtgtt acagtagcct ctcgactaat
     1561 gttatcattc atataggcct caagaactcg tgattgttga accagttcat tgattttctg
     1621 ctctattgag gcagcctgtt gctgattacg taattcatcg gtcattaaag gtcaatttcc
     1681 aaagctatct tataactgtg actaagtaaa tattcttttg atagaacatt atctccgaat
     1741 ggtaaaaaaa acattctgtc cttattaatg ttatagatat gggatactat tagccttgtt
     1801 acccactagt cggaaagtga ttctaaagat actaagaata ttgcttctaa cagtattatt
     1861 agaagatagt ccgaggagat gaatactctc cattctgttt ttctcgggca ataatataat
     1921 aagcaaccat tctttgattg tataatcaat tagttatttt aatgatatct cctttatgca
     1981 atactggtgc ttttatccaa tctctctata agatttctca atgtgcagac tattccatta
     2041 tgtactttct agtgtcagta aaaatgaata aagttatata tgttatttcc tagttttata
     2101 atcgtttatg ttgtcataat ttattattag ttagttataa tctctcatag tggaatactc
     2161 ctactttact cttgttgcct caaaacagga ttcggcaagt atgactatgg caaattacct
     2221 gatacatgac aaagattttt ctgtttatga taagaagaat aataatgagg aatatacctc
     2281 acaagtatat aaaaaaatca aacttcacat ctctcatgaa agtttactct atatagaaga
     2341 tttagataca aaatatcctc attcaaaagc ctttattttt atatcaaagc atagatctga
     2401 aagcagaatc cctactttaa cttgtcattg tactggaaat tttgcagaca atccctatgg
     2461 tggaaacgtg agagagttag caatatcata tccatattta caaaaaagat atttgaagga
     2521 aattaataat tctaaactcg ccctatcata ttatcagatt gttatagaag caagccatca
     2581 tggacctaca tcgttaaaaa aacctgtttt gtttattgaa attggttcta cagaaaggca
     2641 gtggattgac agaaatgctg cttctctcgt atgcaattgt ctcctaggag tcctcataaa
     2701 tggattagga cagtgtgaaa aagttggaat ttgtttaggc ggaacacact atccttcaaa
     2761 atttaacaac ttgttattgg agtcagaatt cggccttgct gctgtggctc caaaacataa
     2821 tttagaatca gttgataaag atatgttaaa tcaaatgatt gtaaagagta tcgagacagt
     2881 tactcatata atagttgact ggaaaggact tggtaaggaa aaaaatagga taatgggact
     2941 agtagaagat acgggtctcg aagtgttgag agtttgatat agttattgct atcatgcatt
     3001 aacttgtggg aatttcttag gtaacaaaag aatgacagca ttaaatatac tgtataaaat
     3061 aggtagggaa ccatcatccg tctgaaatgt ggagtatatc tattatagaa actctctatg
     3121 tttaagaaat aagagttgat aactattaaa tcaagaagat catggtgaga ttggcttttt
     3181 acatgaacat aaatcctaat tctcagacat aaatctagaa tataaatcaa aatgaatttg
     3241 aaaaagtaga tacattgaaa atgagaagca atcttttcat gagtgttgaa acaaatacag
     3301 aagaaactga gtcgataatg aaaacatata tgttcttctt ctcattgata caccccatga
     3361 aaattgttga atgatagccc agatacaatt ggattgttca caccatt
//
LOCUS       DATABJ010000099         2323 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_511312, whole genome shotgun sequence.
ACCESSION   DATABJ010000099 DATABJ010000000
VERSION     DATABJ010000099.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2323
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_511312"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..810)
                     /locus_tag="VHF44_01680"
     CDS             complement(<1..810)
                     /locus_tag="VHF44_01680"
                     /EC_number="1.3.1.14"
                     /inference="COORDINATES: protein motif:HMM:NF005574.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004152 - dihydroorotate dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006221 - pyrimidine nucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HEX2124291.1"
                     /translation="MHRGLKKSQQHFNQSLAVDIADLRFRNPTMLASGFLGISQDIFN
                     RLYLSGAGAVVSKSISIKPIEGYRNPTVVSLENSSYINAVGLSNPGAEEFSNEIAHNK
                     KVPIIISLVGTSEKEFPRMLKMFNHLNIVGYEINLSCPHVAKMGMEVGDDPEMVGCIV
                     RTIKSNTSKPVIIKVGVGSMDILKIAKVAIDSGADAITAINTIRAMTINIETGMPVLS
                     NRIGGLSGKSLKHIAIRCVYEISKNLQIPVIGCGGIFTWQDAVEFMLAGASV"
     gene            1209..2027
                     /locus_tag="VHF44_01685"
     CDS             1209..2027
                     /locus_tag="VHF44_01685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEX2124292.1"
                     /translation="MGRLFDPHIHMYSRTTDDYEAMSKAGIEVIVQPSFWLGSPRTSI
                     GTFEDYWEHMITFETKRAKEFGIEHFVCISVNPKEALARPMAIDALEPMKKYLERERV
                     IAVGELGYNLINDLEEEVFVKQMDIATAKNMLMMIHLPHNNKLEGMKRIERILNSEKN
                     SIKNHERRKILIDHNTEETIEKTIDMGAWAGLTVYPLTKLSPERAIKIIKKYGTEHIM
                     INSSADWGISDPLSVPLVAREMRKEGFSKNDIENVTFYNAYEFYKQSPKMTWNP"
     gene            2046..>2323
                     /locus_tag="VHF44_01690"
     CDS             2046..>2323
                     /locus_tag="VHF44_01690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEX2124293.1"
                     /translation="MKLAFSTNAFKRYSLEEAITMIAEIGYEGIELLCDSPHAYPPTL
                     QEKEIKSFKDQIAKFKLQISNLNAFTLYSITDVYHPSWIEDDKELRELR"
BASE COUNT          802 a          402 c          403 g          716 t
ORIGIN      
        1 gactgatgct cctgcaagca taaattcaac tgcatcttgc caagtaaata tgcctccaca
       61 tccgataact gggatttgaa gattttttga aatttcgtaa acacatctta tagcgatatg
      121 ctttaatgat ttaccagata atcctcctat tctgttacta agaactggca ttccagtttc
      181 tatattaatt gtcatagcac gaatagtatt aattgcagtg atcgcatccg ctcctgaatc
      241 tatggcaact tttgcgattt ttagtatatc catagatcca acgccaacct ttattattac
      301 tggctttgag gtatttgatt tgatagttct aacaatacag ccaaccatct cgggatcatc
      361 acctacttcc attcccatct tcgcaacatg aggacaggat aaattaattt catatccaac
      421 gatattaaga tgattaaaca tttttaacat acgaggaaat tctttctcgg atgttcctac
      481 aagacttatt attattggaa cctttttatt atgagctatc tcatttgaaa attcctcagc
      541 gccaggattc gagagaccta cggcatttat ataactacta ttttctaaag agacaacagt
      601 aggatttcgg tagccctcaa ttggcttaat acttatggat ttacttacaa ctgctcccgc
      661 acctgataga tagagcctat taaaaatgtc ctgagaaatc ccaagaaaac ctgaagcaag
      721 catcgtcgga ttacgaaatc gtaaatctgc tatatcaacc gctaaagact gattgaaatg
      781 ctgttggctc tttttcagtc ctctgtgcat tgtcttaatt gctgaacctc ttagttaata
      841 ttctattcct aactatgtta aacaagaatg ttttgtcttg ttctataaaa aaatgtacgg
      901 atattattaa ttgttaatgg tgtagatata taacattgtt gtttaataca aaaaaatatt
      961 atcttgaatt agatagaaac ctgacttgtg tgttatcgca ttgaccgata ataaccaacg
     1021 tacatgatat aggaatgttg ctagtatgct tctaaaagta tatccaaata gatgatgtaa
     1081 gcaattcata cttgtatcat cattattcgg taactattcg atcactcagt tatagatatc
     1141 aaggttgatg ttattactct tataataaat ctataaaata caagagatgc ttaatataat
     1201 gatagaaagt gggcagatta tttgatcctc atattcatat gtattcacgt actactgacg
     1261 attacgaggc tatgtctaaa gctggtatag aagtaatagt tcaaccttct ttctggcttg
     1321 gtagccctag aacctccatt ggaacatttg aagattattg ggaacatatg ataacatttg
     1381 aaacaaaaag agctaaagaa ttcggaattg aacactttgt ttgcatatca gtcaacccga
     1441 aagaagcttt ggctcgaccg atggcaatcg atgctctaga accaatgaaa aaatatctcg
     1501 aacgggagag agtaatagct gttggagaac tcggttataa tttgattaat gacctggaag
     1561 aagaagtttt tgtaaaacag atggacattg ccacagccaa gaatatgttg atgatgattc
     1621 atctaccaca taataacaaa ttggagggaa tgaaaaggat agaacgcatt ctgaacagtg
     1681 aaaaaaatag tataaaaaat cacgagagaa ggaagatact gattgatcat aatacagaag
     1741 aaactattga aaaaacaatt gatatgggtg catgggcagg actgactgtt tatcctctca
     1801 ctaaactttc tcctgagcga gctataaaaa taataaaaaa atatggaacg gaacatatta
     1861 tgataaatag ttcagctgac tggggtatat ccgatccact aagcgtacca cttgtcgcta
     1921 gggaaatgag aaaagaagga ttcagtaaaa atgatatcga aaatgtgacg ttctataacg
     1981 cctatgaatt ctataaacag tctcctaaaa tgacctggaa tccttaagat tggtagaagt
     2041 tacctatgaa actagcattt agcactaatg cattcaaaag atattcttta gaggaagcta
     2101 taacgatgat cgcagaaatt ggatatgagg gtatagaatt attgtgtgat tctccccatg
     2161 cgtaccctcc gactcttcag gaaaaggaaa taaaatcatt caaagatcaa attgcaaaat
     2221 tcaaacttca aatctctaat ctaaacgctt tcacgctcta ttctattaca gatgtttatc
     2281 atccatcttg gattgaagat gacaaggaat taagagaatt acg
//
LOCUS       DATABJ010000100         2676 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_511665, whole genome shotgun sequence.
ACCESSION   DATABJ010000100 DATABJ010000000
VERSION     DATABJ010000100.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2676
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_511665"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..914)
                     /locus_tag="VHF44_01695"
     CDS             complement(<1..914)
                     /locus_tag="VHF44_01695"
                     /inference="COORDINATES: protein motif:HMM:NF028468.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MASE3 domain-containing protein"
                     /protein_id="HEX2124294.1"
                     /translation="MLSSLSSSPFSFLTNQTLIKYTIVPSIPLIIITILSTNPNTWIA
                     ADVDHFYFEIIAVIFASIVAFYCITRAYTLNDKYSLFIGIGFLTSALIDLMHAIISYN
                     AMDDPFFLRYFIPQTWFAGRTFISAMMVIAITKFAIVPKRSEQLSQRTFITYLSLIVT
                     LAVGVSIVSFITIFPGIVIDFPIHRPYEIPSLILFSIALIYFYKNQLYRRNDVFYKGI
                     LGSLIIDIFAQIVVSFSLTFFESGHNVAHILKDTSYFVIIIALALSSIQYNKRLRERE
                     HEIRVQYEKLKEADRAQKEFINVAAHELR"
     gene            1485..2330
                     /gene="tatC"
                     /locus_tag="VHF44_01700"
     CDS             1485..2330
                     /gene="tatC"
                     /locus_tag="VHF44_01700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018036729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005886 - plasma membrane [Evidence IEA];
                     GO_process: GO:0015628 - protein secretion by the type II
                     secretion system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase subunit TatC"
                     /protein_id="HEX2124295.1"
                     /translation="MLNEAMSSSGMSIFEHINELRSRILRIVISMVIITIFCMSIGIK
                     PITFDLDGDNNNNANDLKLYYPYPDPFRNIALQLTKYMESTLLPPEVKLIQTAPGQAF
                     FAHVYVSLLLGIIGSMPIIIKEIYGFISPAIGKHTKKIGVINVFLPTVSLFIIGMAFS
                     YVIVIPFTLNFLYNYGLAIGVETFLNINEFISFVLQFFLGFGIAFELPVVMYAISLTG
                     IVDSNFWRNNFRYAAIILVIFGALITPDGSGITMWFIAVPMITIYLIGMLAIRRREKK
                     TLEIS"
     gene            2370..>2676
                     /locus_tag="VHF44_01705"
     CDS             2370..>2676
                     /locus_tag="VHF44_01705"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEX2124296.1"
                     /translation="MNVEMESLPLNMMMQMIPSGFEWIFIVVIVVVLIFGAKKIPDLA
                     RGFGKATTEFEKARIEAKRELREIKNAGTSSSTTTTNTAANREKLESIADTLGIDYTD
                     "
BASE COUNT          911 a          391 c          472 g          902 t
ORIGIN      
        1 cgtaattcat gagctgcaac attgataaac tctttctgag ccctgtctgc ctcttttaat
       61 ttctcatatt gaacacgaat ttcatgttct ctttctctca atctcttatt gtactgtata
      121 ctcgataatg caagagcaat aattatgaca aaataacttg tatccttgag tatatgcgct
      181 acattatgtc ccgactcaaa aaaagtaaga gaaaaagaca ccacaatttg ggcaaaaata
      241 tcaattatta acgaacctag tattccttta tagaacacat cgtttctacg ataaagctga
      301 tttttgtaaa aatatatcaa agcgattgag aatagtatca gtgaaggtat ttcgtatggt
      361 cgatgtatag gaaaatcaat tactatccct ggaaaaattg taatgaatga gacaatagag
      421 acacctactg ctaaagtcac aattagagat aaataagtta tgaatgttct ttgtgacagc
      481 tgttcggatc tttttggtac aatggcaaac tttgtgatcg ctattaccat catagcgcta
      541 ataaatgtcc ttcctgcaaa ccaagtctgt ggtataaagt atctgagaaa aaaagggtca
      601 tccatagcat tgtatgagat tatagcatgc atcaaatcaa ttaaagcact tgtaagaaat
      661 cctataccaa taaaaagaga atatttatca tttaatgtat aagcgcgtgt tatgcagtaa
      721 aatgccacta ttgatgcaaa tattacagca attatctcaa agtaaaaatg atcaacatcg
      781 gctgctatcc aagtattagg attggtagat agaattgtta tgattattag aggtattgat
      841 ggtacaattg tatatttaat tagagtctga ttagtaagaa aggagaaagg tgatgatgat
      901 aatgatgata acattgtctt cagcttcaag tctttaagat caccataata tccaaagcaa
      961 tagtgtatat ttaagaatgt ctttacaatt ttgattttta aaggtagata attttatctt
     1021 attgtctaaa atttctcatt aaatgtaaaa atatagaaat cgtatatgta gaaatggcat
     1081 aatgtgttaa ttctacttat tgtgttgttg ttgtagtgag gagaagtgta ctgtcaatac
     1141 aaaaacagta attattatca acaacgtcaa ataataaaaa tagtttgtat tataaaatat
     1201 gtttatctct cttacttctc gctcccccca catgctgttt ttcatttact agttaactcc
     1261 tcatatttgg agggttagga ttaaagatta aagattaaag aagaaaagaa gaagatgagg
     1321 caaaattaaa gggctccaat tgagaagata gttttttggt aagatagagt atatatgaag
     1381 aaaagacttt gcagaatgta gcgttatatt ataacataat tatcaaagat agtcaatgag
     1441 atatcagccg acacactatt atatttccaa gatatattgt ttgtttgtta aacgaagcca
     1501 tgtcgtcttc tgggatgtct atatttgagc atatcaatga gctacgctca agaatactcc
     1561 gtattgtaat ttctatggta attattacta ttttttgtat gagtatcggg ataaaaccga
     1621 ttacatttga tttagatggt gataataata acaacgcaaa tgatctaaaa ttatattatc
     1681 cttatcctga tccatttagg aatattgctc ttcagcttac caaatatatg gaaagcactc
     1741 ttcttccgcc agaggtaaag ctaattcaaa cagctcctgg gcaggcattc tttgctcatg
     1801 tatatgtctc attattactt ggcattattg gttctatgcc aataattatc aaagaaatat
     1861 atggttttat ctctccagca attggcaaac atacaaagaa aattggagta atcaatgtat
     1921 ttctccctac tgtgtctctg tttatcatag gtatggcatt ctcgtatgtc atagtaattc
     1981 catttacgct taattttcta tacaattacg gtctagcaat aggtgttgag acgtttctta
     2041 atatcaatga atttatctct tttgtattgc aattcttttt gggatttgga attgcctttg
     2101 aacttcctgt agtaatgtac gcaatttctc ttaccggcat agttgattcg aatttttgga
     2161 gaaataactt taggtacgca gctataattt tggttatttt tggtgcattg ataactccag
     2221 atggtagtgg aattactatg tggtttatcg cagtgcctat gattacaata tatcttatag
     2281 gtatgctggc aattagaagg agagagaaga aaacccttga gatttcgtaa agtgtattaa
     2341 aggaaaaccc ttaaatcgtt gctattaata tgaatgttga aatggaaagc ttacctctga
     2401 atatgatgat gcagatgata ccttcaggat ttgagtggat atttattgtt gtgatagtgg
     2461 tagttctcat ttttggtgca aagaaaattc cagatcttgc tagaggtttc ggtaaagcta
     2521 ctacagaatt tgaaaaggct aggattgaag caaaaagaga acttcgtgaa attaaaaatg
     2581 cagggacatc atcatcaaca acaacgacaa atacagctgc aaatagagaa aagctggaat
     2641 ctattgctga tactctagga attgattata ccgaca
//
LOCUS       DATABJ010000101         1909 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1377440, whole genome shotgun sequence.
ACCESSION   DATABJ010000101 DATABJ010000000
VERSION     DATABJ010000101.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1909)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1909)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1909
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1377440"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..>1909)
                     /locus_tag="VHF44_01710"
     CDS             complement(<1..>1909)
                     /locus_tag="VHF44_01710"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit A'/A''"
                     /protein_id="HEX2124297.1"
                     /translation="VFNGPNNYPGANYIIRPDGVKIRLDYVNDRQMVADSIVPGYIIE
                     RHLSENDIVIFNRQPSLHRMSIMAHYVKVLPYRTFRLHPAVCPPYNADFDGDEMNLHV
                     PQSEEARSEAALLMSVQDQLISPRYGGPIIGGIRDFITGAYILTRDETLLSKEEFFNL
                     ALLGGYIGPMPESKAEKDGNKVYTGKQLFSLFLPKDFNFIITSKWNKSIKGEGKDVVI
                     KNGELISGVIDKASIGAEEPDSVLHRIAKDYGNDVAQKFLNSILIMLKTFITHRGFTY
                     GYSDLWLSDETHKEITGVIKKAYDKIDELIQQHKEGTLPLTRGLSPEEALELYLVNEL
                     SRARDRAGRLADRSFPNNNAGVIMASTGARGSILNIGQMTAVLGQQSIRGKRIHKGYH
                     NRSLPHFKVNDTNPDAKGFVKSNYRDGLTPLEFFFHAMGGREGLVDTAVRTQQSGYMQ
                     RRLINALEHLKMEYDGTVRDPHGNIIQYLYGEDGIDPAKSDHGESVNISRVIESESVI
                     DEGVKADEEEIKNILNQYVFDFNLKLKNNIESVLLENRLSKKGIEKVIKKIIDLVERA
                     MVEPGEAVGVVTAQSIGEPGTQMTLRTFHYAGVKERNVTLGLPRLIELVDARKKPITP
                     TMDIYLDEEHRV"
BASE COUNT          555 a          390 c          269 g          695 t
ORIGIN      
        1 actcgatgtt cttcatcaag gtaaatatcc attgtagggg ttataggttt tttccttgca
       61 tctaccaatt ctattaaacg agggagtcct agagttacat ttcgttcttt aaccccagca
      121 taatggaaag ttctcaaggt catttgtgtt cccggctcac cgatagattg agcagtaacc
      181 acccctactg cttctcctgg ttccaccata gctctttcta ccaaatctat aattttttta
      241 ataacctttt ctattccttt tttacttagt ctgttttcta gtaatacact ttcaatatta
      301 ttttttagtt taagattaaa gtcaaagaca tattgattta atatattttt aatttcttct
      361 tcatctgctt ttactccttc gtcaatgact gattcactct cgattactct agaaatatta
      421 acagattcac catggtcact ttttgcagga tcaataccat cctccccata gagatactga
      481 attatattac catgaggatc tctaacggta ccatcgtatt ccattttcaa atgttctagg
      541 gcgttgatta atcttctctg catatatcca gattgttgag ttcttacagc agtatcaact
      601 aaaccttccc taccacccat agcgtgaaaa aagaattcaa gtggtgtaag cccatctcga
      661 taatttgatt taacaaaacc ttttgcatcg ggatttgtat catttacctt gaaatggggt
      721 aaagatctat tatgataccc tttatggatc ctttttcctc taatagactg ttgtcccaaa
      781 acagcagtca tttgacctat atttagtata gaacctcttg cgcctgttga tgccattata
      841 actcctgcat tgttatttgg aaatgatcta tcagctagtc tgccagctcg atctctagcc
      901 cttgagagct catttacaag gtacaattct aatgcttctt ctggtgataa tcctcgtgtt
      961 aatggtaaag ttccctcctt atgctgttga attagttcat cgatcttatc atatgctttc
     1021 ttgattactc ctgtaatttc tttatgtgtc tcatctgata accataaatc tgaatagcca
     1081 tatgtgaaac ccctatgagt aataaaagtt ttcaacatta tcaaaataga attaaggaat
     1141 ttttgtgcaa catcgtttcc atagtccttc gctattctat gtaaaacact atctggttcc
     1201 tctgcaccaa ttgaggcttt atctattaca ccactaatca attcaccatt tttaattacc
     1261 acatcttttc cttctccttt aatagattta ttccactttg atgtaataat gaaattgaaa
     1321 tcttttggaa gaaatagtga aaataattgt ttacctgtat atactttatt accatctttt
     1381 tcagcttttg attctggcat tggtccaata tagccgccta atagtgctaa attgaaaaac
     1441 tcttcttttg ataatagagt ctcatctctt gttaaaatat aagctcctgt aataaagtct
     1501 cgaatcccac caataatagg tccaccgtat cttggagaaa ttagctgatc ttgaacactc
     1561 atcaataaag ctgcttcaga tctagcttct tcactttgtg gaacatgaag attcatttca
     1621 tcaccatcaa aatcagcatt atatggcgga caaactgcag gatgtaatct aaatgttcta
     1681 tatggaagaa cttttacata atgtgccata atagacattc tatgtaaaga aggttgtcta
     1741 ttaaaaataa ctatatcgtt ctctgacaaa tgtcgttcta taatgtaacc aggtacaata
     1801 gaatccgcca ccatttgcct gtcattgaca taatcaagcc ttatttttac tccatctggt
     1861 cttataatat aatttgctcc aggatagttg ttcggtccat taaaaacta
//
LOCUS       DATABJ010000102         2083 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_949104, whole genome shotgun sequence.
ACCESSION   DATABJ010000102 DATABJ010000000
VERSION     DATABJ010000102.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_949104"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..447
                     /locus_tag="VHF44_01715"
     CDS             <1..447
                     /locus_tag="VHF44_01715"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124298.1"
                     /translation="GAVQNYRQFNSQKIFQNDLNGTSIPSPSQGLLDLFEKELNVNLA
                     KINFPFLERALPDILVEELKLVDYFLIESKNDDTFSIQFSGEPSVHLCRLINEKSKMG
                     YRIGCPVCSVLALALSKFTGRPIRIKQTTIEGEGSNIKTIYEKIKS"
     gene            642..851
                     /locus_tag="VHF44_01720"
     CDS             642..851
                     /locus_tag="VHF44_01720"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124299.1"
                     /translation="MSFVLSLSDFGMWLAVSSLIMLTAVELTSPFYASRSNVSFNRKK
                     IRRVAVGFAIAFVAVALIRITFLVL"
     gene            861..1328
                     /locus_tag="VHF44_01725"
     CDS             861..1328
                     /locus_tag="VHF44_01725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124300.1"
                     /translation="MNILVSIFFLLIANNSNNIIMENHMVTALESADLALRDIRDAER
                     NGAEISSLIEKFNTALGLIEQANTSKYSTCFDYDNCLDSAKTIFNSISKDSVILKDEA
                     NRVSSYTNVIVVGIYLPLIAFFSLLFIFYLYKTWKSIQKDKFLNMQIKERREK"
     gene            1364..1987
                     /locus_tag="VHF44_01730"
     CDS             1364..1987
                     /locus_tag="VHF44_01730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124301.1"
                     /translation="MVSRTFIISYLTLLITIIIGYWLTTDERPDERFLTLSTLGKNDT
                     AGDYYPSNNNNTNIVLPGQMVSWNIYVYNHAESAEYVSVRIKLLNSTDTTPDENYYSG
                     NPRSQYLYEFRHLLARNSTWNIPLDWMISNVSIDPDHGHIIIGGLDINNHHVEGLNVT
                     SLQGKDFRMIIELWKYNMEDKAFVFQGFPENDNNGGAWNQIWFSLKV"
BASE COUNT          691 a          353 c          407 g          632 t
ORIGIN      
        1 ggggcagtcc agaattatcg acaatttaac agtcaaaaaa ttttccaaaa tgatcttaat
       61 ggtacttcta ttccctctcc tagtcaaggc ttactagatc tttttgaaaa ggaattaaat
      121 gtgaaccttg caaagattaa ttttcctttt ttggagaggg cattacctga tatactagtt
      181 gaagagctga agcttgtcga ttattttctg atagaatcaa aaaatgatga taccttttca
      241 attcaatttt ctggcgaacc ctctgtccat ttatgcaggc tcataaatga gaaatcaaaa
      301 atggggtatc gcataggatg tccagtctgt agtgtacttg cattagccct gagcaaattc
      361 acaggcagac caataagaat aaaacaaact accatagaag gtgagggcag caatatcaaa
      421 accatttatg agaagataaa gagctaaatt tgagtccaac ctaaaggggt aaggtatata
      481 gcttagacta caaaagaaaa gacatcatag catgctaggt tagaaagaac tcgtggaata
      541 gaaatgttga tttattgttc ttgtcaaata gattcatctt tgcacgaact tattactact
      601 gctgctactg ctactacatt tcgggagttt atcaactaga aatgagcttt gtactttctt
      661 tatcagattt tggaatgtgg cttgcagtat catctttaat tatgttaaca gctgttgagt
      721 tgacgtcacc gttctatgca agcagaagca atgtatcttt taatagaaaa aaaattagaa
      781 gagttgcagt gggatttgct attgcgttcg ttgcagtagc attaataagg atcacattct
      841 tagttctgta agcatccgct atgaacatat tggtcagcat tttctttttg ctgatagcaa
      901 ataattctaa taatattatc atggaaaatc atatggtaac agctcttgaa tcagcggatt
      961 tagcattgcg tgacatccga gatgcagagc gtaatggggc ggagatatcc tcacttattg
     1021 aaaagttcaa tacggctctt ggattgatag agcaagcaaa cacatcaaaa tactccactt
     1081 gctttgacta tgacaattgt ttggacagtg caaaaactat cttcaattcc ataagcaaag
     1141 actctgtaat tctcaaagat gaagcaaaca gggtatctag ctatacgaat gtcattgttg
     1201 tgggaatata tttgccgttg atcgcctttt tttcacttct gttcattttt tacctttaca
     1261 agacctggaa atcgattcaa aaagacaagt ttcttaatat gcaaataaag gagaggaggg
     1321 agaaatagcg tcagttggaa agctttcaga tataaaaaac ataatggtat ctagaacatt
     1381 tatcataagt tatctcacat tactcattac aattatcatt ggttattggt taactactga
     1441 cgagcgtccg gacgagagat ttctaacttt aagcacgctc ggaaaaaatg acactgctgg
     1501 cgattactat ccttccaaca ataataatac taacatagtg cttccaggtc agatggtctc
     1561 ttggaatatt tatgtatata atcatgcgga aagcgctgaa tatgtttcag ttagaataaa
     1621 gttgctaaac tctacagata ctactccaga tgagaattat tattctggca atccacgcag
     1681 ccagtaccta tacgaattca gacacttact tgcaagaaat tcaacatgga acattccctt
     1741 ggattggatg atttcaaatg tcagtataga tcctgaccat ggacatataa taataggggg
     1801 cctggatata aataaccacc atgttgaggg attgaatgta acaagtctac aaggcaaaga
     1861 ctttaggatg ataattgaac tgtggaaata caatatggaa gataaggcct ttgtttttca
     1921 aggatttccc gagaatgata acaatggggg tgcatggaat cagatttggt tcagtctaaa
     1981 agtatagatt cagatagatc cgaactattg cagcaaagaa tactcgagtc tgtcgctacg
     2041 cacaaatgct atagcgtcaa ggatttggtt gtcgaattgc agc
//
LOCUS       DATABJ010000103         3399 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1378880, whole genome shotgun sequence.
ACCESSION   DATABJ010000103 DATABJ010000000
VERSION     DATABJ010000103.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3399)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3399)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3399
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1378880"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            89..3355
                     /locus_tag="VHF44_01735"
     CDS             89..3355
                     /locus_tag="VHF44_01735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004812 - aminoacyl-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006418 - tRNA aminoacylation for protein
                     translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I tRNA ligase family protein"
                     /protein_id="HEX2124302.1"
                     /translation="MALQGKFDAKAFENEIRNYLDKINLKTLLKNELYDNNNNDIVSY
                     IEGPPTLNGEPHAGHLRGRVIKDVWYRFNTLQKKKVIFRAGWDTQGLPVELQAEKELG
                     LTGSKTDNLKKVGIEKIVETCKKLISYYNEKWVSADKLLGMSFDYENAYWTFSDKYIE
                     REWQYLKKAWENGILQEWFRVVAYCPSCQSSLSNAEVNQGYEIVEDPSFYYKVRLTTE
                     DAYLIVWTTMPFTVVTDEMIGVNPEAKYVYVTVKNKNNGEEEEEKWIVSEARLQDLMK
                     QLKIYEFKIEKTIYGNDLDGKHYIHPLLDLIPELDILAKEGSIHFVVAEDFVDAVATG
                     SGIVHLSPANGEVDFDIATKRNVPIFVPIDDRAFFTEKAGEFKDVFVRDADRTIIKAM
                     EDAGAAIKSGTIKHQYPTCWRSHHKLVWIARREYFYIIKKLGDLPLEAAQNVEYFYEP
                     PKNRFSEIIKEKVPWCISRERVWGTPLPIWSCPQCGHKDPLFSRDEIIKKARNLPDGP
                     NFELHRPWIDRIVIKCDNCEENMQREPFVLDTWHNSGGAPYASLSDVEYQNLIPASFL
                     TEGIDQTRGWAYTLLMENVILQQRAIAPFQSFLFQGHVLDDKGNKMSKSIGNVIDAQN
                     LLRENSVDLVRFYFMWKASPIESLNFSLKEMEKRPYQVMSTLYYLHTYFKQNSSFDRF
                     EQNKHNLTWVLDNNLLTLPEIWLLSKLQRLISQVTIAFEGCRYNEGAKAIEEFIINQL
                     SQTYIPVTRNDIWDDSPEGINRRFAIYSILSYSLMQIDIMLHPYSPFITDYLYLRCFP
                     YLKKSTILLERWPKYEGQLVNRTIEEAFDKSKEVISLANAARMKVQLKRRWPMKEAII
                     CSPDLTFLSVDGISNIIKNQLNVENYSLVKIHEDTELGKLLSLLENKLPIVPKIELIR
                     KNIAPSVKGNIDKVILAFEKLDKIELLKALKSSSAGTFRLVYEGGGEFLLSADDLKLS
                     YIVSEGYVMSERDNLMVFISTQRDKELTAKGFLRDLARNLQQLRKECGYNPTDTLSTA
                     FVADLYDEEISFLSPLKDELKYLVRVKSIVLTKDVIEEEKINYKLIDLEGRKLKISIQ
                     "
BASE COUNT         1220 a          544 c          675 g          960 t
ORIGIN      
        1 tattgctatc cttgcaatgt aagagagaat atagatacta aatataaatg caggtcgtaa
       61 gataagagtg gctttggtat aataataaat ggcacttcaa ggcaaatttg atgctaaggc
      121 atttgaaaat gagattcgca attatttaga caagataaat ctgaaaaccc ttttgaaaaa
      181 tgagctttat gataacaata ataacgatat agtaagttat atcgagggtc ctcccacctt
      241 gaatggagaa ccacatgcag gacatttaag aggacgcgta attaaagatg tctggtatag
      301 attcaatact ttacaaaaaa agaaggtgat ctttagagct ggctgggata ctcaaggtct
      361 tccagtagaa ttgcaggctg aaaaggaatt aggattgaca ggaagtaaaa cagataatct
      421 taagaaagtt ggaatcgaaa aaattgtcga aacatgcaag aaattaattt cgtattataa
      481 tgagaaatgg gttagcgcag acaaattgct aggtatgtca tttgactatg aaaatgcata
      541 ctggactttt tctgacaaat atattgaaag agaatggcaa tacttaaaga aagcttggga
      601 gaatggaata ttacaggaat ggtttagggt tgtcgcatac tgtccgtcat gtcaaagttc
      661 tcttagtaat gctgaggtta accaaggata tgaaatagtc gaggatccat ctttctatta
      721 taaagtaaga ttaaccacag aagatgcata tctcattgtc tggacaacca tgccttttac
      781 agtcgttaca gatgaaatga taggagtcaa tccagaagct aaatatgtat atgtaacagt
      841 aaaaaacaag aacaatggcg aagaagaaga agaaaaatgg attgtttcag aagctcgatt
      901 acaggatctg atgaaacagc tcaaaattta tgaattcaaa atcgaaaaaa caatttatgg
      961 taacgatctt gatggcaagc attacattca tcctctactt gatttgatac cagaacttga
     1021 catcttggca aaagaagggt ctattcactt tgtcgtagca gaagactttg tagatgctgt
     1081 tgcaactggc agcggcatag ttcatctgtc tccagcaaat ggtgaagtag attttgacat
     1141 tgccacgaaa agaaatgtgc caatatttgt accaatcgac gatagagctt tttttaccga
     1201 aaaagccgga gaatttaaag atgtttttgt cagagatgct gaccgcacaa taattaaagc
     1261 aatggaagac gcaggtgctg ctattaaatc aggcacgata aaacatcaat atccaacttg
     1321 ctggcgttct catcacaaac tggtctggat tgccagaaga gaatattttt acattataaa
     1381 gaaacttggc gatctgccat tagaagcagc acagaatgta gaatattttt atgagcctcc
     1441 gaaaaataga ttttctgaaa ttataaagga aaaggtacct tggtgtatat caagggagcg
     1501 tgtatggggc actcctcttc caatttggtc gtgtcctcaa tgcggacaca aagatccatt
     1561 attctcaaga gatgagatca taaaaaaggc aaggaatctt cctgatggtc ccaactttga
     1621 acttcatagg ccttggattg ataggattgt aataaaatgt gacaactgtg aagaaaatat
     1681 gcaaagagaa ccttttgttc tagatacatg gcataatagt ggtggagctc cctatgcttc
     1741 actcagcgat gttgaatatc agaatctaat tcctgcttct ttcctaacag aaggaataga
     1801 tcagacaaga ggttgggcat acactctatt aatggaaaat gtgatattgc aacaacgcgc
     1861 aattgcgcca ttccaatcct ttctattcca aggacacgtg ctagatgaca aaggaaataa
     1921 aatgagcaaa agtatcggaa atgtaattga tgcacagaac ttactcagag aaaattctgt
     1981 agatttagtc agattttatt ttatgtggaa ggcatctcca atcgaatcat tgaactttag
     2041 ccttaaagaa atggaaaaaa gaccctatca ggtcatgagt accttgtatt acttacacac
     2101 ttattttaaa cagaatagca gctttgatag gtttgaacaa aataaacaca atcttacttg
     2161 ggtgttagac aacaatttat tgactttacc ggagatatgg cttttatcaa agttacagcg
     2221 cctgatatcg caggtcacaa tagcatttga aggatgtaga tataatgaag gtgcaaaagc
     2281 gatcgaagaa tttataatta atcaattaag ccaaacatat attccagtca ccagaaatga
     2341 tatttgggat gatagtccag agggcattaa ccgcagattt gcaatctatt cgatattgtc
     2401 ctattcgctc atgcaaatag atataatgct tcatccttac tcgccattta ttacagacta
     2461 tctctattta cgttgctttc catatctaaa aaagagtact atcctgcttg aacgctggcc
     2521 aaaatatgaa ggacaactcg ttaacagaac gatagaagaa gcttttgaca aatcaaaaga
     2581 agtaatctcc cttgcaaatg ctgcaagaat gaaggttcaa ctaaaaagac gatggccaat
     2641 gaaggaggct attatttgta gccctgattt aacatttctt tccgtggacg gaatttcaaa
     2701 tataataaaa aatcaactaa atgttgaaaa ttattcccta gtcaagattc atgaagatac
     2761 agaactagga aaactattaa gtctcttaga aaacaaattg ccaattgttc caaagatcga
     2821 gttgattagg aaaaatatcg cacctagcgt aaaaggcaat attgataaag taatacttgc
     2881 atttgaaaaa ctcgacaaga tagagttgct caaagctctg aagtcatcat ctgccgggac
     2941 gtttaggctt gtatatgaag gtggaggaga gttccttctc tcggcagatg atttaaaact
     3001 atcatacata gtctcagaag gatacgtcat gtcagagaga gacaatctta tggtttttat
     3061 ttccacacaa cgtgacaagg aattgacagc taaaggcttc ttaagagatc tggcgagaaa
     3121 cctacagcag ttacgaaagg agtgtggata taatccaaca gatacacttt caacagcttt
     3181 tgtagcagat ttatatgatg aagaaatttc ttttctgtct ccgttgaagg atgagctgaa
     3241 gtatcttgta agagtcaaat ccattgtatt aacgaaagat gtaattgaag aagaaaaaat
     3301 aaactacaag ttaatagatc ttgaaggacg aaaactgaaa atttcaatac aataatgtag
     3361 gggcatggat gtctctctta taaaatttat gtatatata
//
LOCUS       DATABJ010000104         4844 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_513926, whole genome shotgun sequence.
ACCESSION   DATABJ010000104 DATABJ010000000
VERSION     DATABJ010000104.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4844)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4844)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4844
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_513926"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..940)
                     /locus_tag="VHF44_01740"
     CDS             complement(<1..940)
                     /locus_tag="VHF44_01740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEX2124303.1"
                     /translation="MDIKEGLTFDDVLLVPKRSPIISRTQTDLKTKLSRNITINIPLV
                     SANMDTITESGMAIALAREGGIGIIHRFMTIGDQVDEVLRVKRSESVMIEQPYTIKDD
                     MKVHDAKKMMLEYGVSGLLVETNDRTLDGIITNRDIIFEKNMERKVAELMTKNVITAK
                     YGTTMEQAKEILHKHRIEKLPVVDDKKRIVGLITSKDIMKMDQYPFASKDKKGRLLVG
                     AAVGVKGDFLERTEALLDAGADTIIVDIAHGHSDNAINTVNMIKKAFPNCELIAGNVA
                     TGEGARDLITAGVDAVKVGVGSGSICITRVVTGSGVP"
     gene            complement(1305..2186)
                     /gene="folP"
                     /locus_tag="VHF44_01745"
     CDS             complement(1305..2186)
                     /gene="folP"
                     /locus_tag="VHF44_01745"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: protein motif:HMM:TIGR01496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004156 - dihydropteroate synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009396 - folic acid-containing compound
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEX2124304.1"
                     /translation="MTYIGKVLVGDNYPARVMGIINTSPESFYKESIKTGTKEIVETA
                     IEMQNSGADIIDIGSMSTAPYLQTIISIEEEIRRMKQAINIVRKSCNLPISIDTPRSR
                     VAKEAIAFGANAINDITGLKYDKEMADIVSKSNLPVIVGAYNRNKSLPKTNLDKISGT
                     IKLLKESITIAKRAGISDDNIIIDPSIGFFRVDGKNPFFTEMKDVPWYSRDIEVISKL
                     NNIKKLSKPICISVSRKSFIGKLLKLDTEDRLIPTLVCEVISTLNGANLIRTHNVRET
                     VQALTMLKLLAKKPPII"
     gene            2403..>4844
                     /locus_tag="VHF44_01750"
     CDS             2403..>4844
                     /locus_tag="VHF44_01750"
                     /inference="COORDINATES: protein motif:HMM:NF017964.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amylo-alpha-1,6-glucosidase"
                     /protein_id="HEX2124305.1"
                     /translation="MVRTLDKTHTVLSYIEGSLKNVMIVEGDNKYQGFIFSLLNPPVP
                     LGGNIVSLDIYVNEIPIPKKSIFIATSEDVINASALSEYRPIPFKPFQSARFLIIKED
                     GLEEKKKHKIVILSKLEGFEQIIIPFTFSDYAGERRERIFLSSDLVDDQESATTNEDT
                     IFKNFTNPLILSGKKAYIVCSSNGSLSANWTWMGAKYDNGGLYVPPARAFGRILVEIS
                     MDDGIRKRLPNFVVSSRHEKGFLSTRHEVAGLQVKRTLFVPIENRGFVMRLELDLLDK
                     YSDFSKVGLKKKIQKTKRKIRVHFLIDGNITSYGLAAISQSNYSKLLTTDNCLQIQTS
                     AKKGVAHYYGTIGVAPRDLRPSKILMDSFDNDLELSYDLEIEAGKSREISLVGAGTFS
                     SSKDCIKEYRFIRDNYRQLLADTREHFITVFSSTLYAESTSKQNPTVAKLLKALDKAK
                     VSMEYLKAEYDELGAGICAGLPRFPNYWARDTGWALRGYLSMEDYYFVYSIIENFLHY
                     QAKKTSSIAKKGELPMIISGQAFLHNTTYGSADSTFLFPWAIHEYVLATGDIGYLEKR
                     WKSITDLVNWGFLKDSDGDGLVEHGFTGVAEKLPIQDSTWMDHIDRRKSANDIQALFY
                     ESLKIGSDLARIVGDNYNREKWQKSAEQLRDKIDLEYWNATTKFYHDTIRKDGSKDPS
                     IRPNALVLLMTDAVRDRAKAEYVLTRIEKDDITTAWGVRTLSALDPKYHPSLYHDGAV
                     WPLVTGWAAISEIKFRRKEQALYYIESMAERILSENGMFAETYRGDRPEPFNSCILQA
                     WSVGMYTYALREMMLG"
BASE COUNT         1478 a          835 c          878 g         1653 t
ORIGIN      
        1 gcggaacacc tgatcctgta actactcttg taatacaaat ggagccagaa cctaccccca
       61 ctttcactgc atcgacacca gctgtaatta aatccctggc accttcaccg gtggcaacgt
      121 ttccagcgat gagttcgcaa tttggaaatg cttttttgat catatttact gtgttgatag
      181 cattatcgct atgaccgtga gcaatatcaa ctattattgt atcggctcct gcatctaaga
      241 gtgcttccgt tctttccaaa aagtcacctt ttactccgac cgcagctcca acaagtagtc
      301 tacctttttt gtctttagaa gcaaatggat actgatccat tttcataata tctttacttg
      361 taataagacc tacaatacgt tttttatcat caactactgg taatttttca attctgtgtt
      421 tgtgaagaat ttcttttgct tgctccattg tagttccata ttttgcagta ataacattct
      481 tagtcatcag ttctgcaact ttgcgttcca tgttcttttc aaatataatg tctctattgg
      541 taataatgcc gtcaagtgtc ctatcatttg tttctacaag caaacctgat acgccatatt
      601 ccagcatcat cttctttgca tcatgcactt tcatatcatc tttgatagta tatggttgct
      661 ctatcataac cgattcagaa cgttttactc ttaaaacttc gtctacttgg tctccaatag
      721 tcataaacct atgaataatc ccgatacctc cctctctggc taaagctatt gccattccag
      781 attctgtaat tgtatccata tttgcactga caagcggaat atttatggta atatttctag
      841 acagttttgt tttcaaatct gtctgagttc tagaaattat tggcgagcgt ttagggacaa
      901 gtaatacatc gtcaaacgtg agaccttctt taatatccaa tattccctta ctctctagct
      961 gctttgtcgg attataagcg tttacttatt taaaaaatag ctttttattg ttatattcat
     1021 gtattgagaa ttacaaactc ttcactaatg cttattataa ttattaaatc aataatatct
     1081 gactatttat tatgaagtta agaatatctt tttgtactgt ttgattgatt cttgtcaaat
     1141 ttttattatt catcattgta tttatgatca catgctttta ttacttcctt atgatacaac
     1201 attcactctg ttcagattta aagccagaat ttttactatg tatcatcata aagtcaattg
     1261 tagacaatgt taattgatag tatcttcctc gagttctcta ttggctaaat gattggaggc
     1321 ttctttgcaa gtaactttaa cattgtaagt gcctgcactg tctcccttac attgtgtgtt
     1381 ctaattaagt ttgcaccatt caaggtagat attacttcgc ataccagtgt tggaattaag
     1441 cggtcttctg tatctagttt taataactta cctataaatg attttctcga aactgaaata
     1501 caaattggtt ttgacagttt ctttatatta tttagctttg aaattacttc aatatcacga
     1561 ctataccaag gtacatcttt catttctgta aagaatggat ttttaccatc aactcggaaa
     1621 aatccaatag atggatctat gattatattg tcgtcactaa taccagctct ttttgcaatc
     1681 gtaatgctct cctttagaag ttttatcgta ccagagattt tgtccaagtt ggtctttggt
     1741 aacgatttat tcctattata tgcacctacg atgactggaa gatttgattt tgatacaata
     1801 tctgccatct ctttgtcata ctttaaccca gtaatatcgt tgatagcatt agcaccaaag
     1861 gcgatagcct ctttagccac tcttgatctt ggtgtatcaa ttgaaattgg taagttgcaa
     1921 cttttcctta ctatgtttat tgcctgtttc attcttctga tttcttcttc aatagaaatg
     1981 atagtttgaa gatagggcgc tgtagacatt gagcctatat ctattatatc agctccacta
     2041 ttctgcatct ctatagctgt ttcaacaatt tctttggtgc cagttttaat ggattctttg
     2101 taaaatgatt ctggactagt attaattatt cccatcaccc tggctggata gttgtctccg
     2161 accaagactt taccaatata tgtcaatttt ttatttactc ttcacagttt tcgatattaa
     2221 attaacaatt gttactgatg ctaacatata taatttttgt cactagtgtc atatatcata
     2281 tctagttcga ctggataata taatctacta catattgata gtcttataaa gtattttata
     2341 gtttaaaatt taagagggtc gttcgttcat ctgctgatga tacgatagtt aggtgtagtt
     2401 aaatggtaag gacattagac aaaacacata ctgtactctc ctatattgag ggaagtttaa
     2461 aaaatgtgat gatagtcgag ggtgataata aataccaggg atttattttc tctttgctaa
     2521 atccgccagt gcctttaggc ggaaatattg tatcgcttga tatctatgta aatgagattc
     2581 caatcccaaa gaaatcgatt tttattgcaa cctcagagga tgtcataaat gcatcagcgc
     2641 tttctgaata tagacctatt ccatttaagc cttttcagag tgcaagattc ttaataataa
     2701 aagaagatgg attggaagaa aaaaagaaac ataaaattgt aattttgagt aaacttgaag
     2761 gctttgagca gataattatt ccctttacct tcagcgatta tgcaggagaa cggagagaaa
     2821 ggatctttct gtcttctgat ctagttgatg atcaagaatc tgctacaaca aacgaagata
     2881 ccatttttaa gaactttacg aacccattga tattatctgg aaaaaaggca tatatagttt
     2941 gttcatctaa cggatcactt tctgccaatt ggacatggat gggcgctaaa tacgataatg
     3001 gagggttata tgtgccccct gcacgagctt ttggccggat tttagttgaa atttctatgg
     3061 atgatggtat acgtaagcgg cttccaaatt ttgttgtatc ttccaggcat gagaaagggt
     3121 ttctctctac taggcatgaa gtagcaggat tgcaagtaaa aaggacatta ttcgtaccta
     3181 tagaaaacag aggatttgtt atgcgcttgg aacttgatct attagataaa tatagtgatt
     3241 tttcaaaagt gggtttaaag aagaaaattc aaaaaaccaa acgaaagatt cgagttcatt
     3301 ttcttattga tggtaatatc accagttatg gtcttgctgc tatttctcaa agtaattatt
     3361 caaagttgct tacaacggat aattgcctgc aaatacaaac aagtgccaaa aaaggtgttg
     3421 ctcattatta tggaacaatt ggagttgcac cgagagattt gaggccttct aaaattctaa
     3481 tggattcttt tgataatgac ctcgagctat cttatgacct tgaaattgaa gcaggaaaga
     3541 gtcgtgagat ttctcttgtc ggcgctggca cttttagcag ttctaaagat tgtataaaag
     3601 aatacaggtt tataagagat aattacagac agctcttagc tgataccaga gagcacttca
     3661 taactgtctt ctcttctacg ttatatgcag aatcaacttc aaaacaaaat ccaactgttg
     3721 cgaaactact caaagcttta gacaaagcaa aggtgagcat ggaatattta aaagcagaat
     3781 acgatgaact tggagcggga atttgtgcag gactaccaag attccctaat tattgggcga
     3841 gagatactgg ttgggcgtta agaggttatt tgtctatgga ggattattat tttgtctatt
     3901 caataattga aaattttcta cactaccaag ctaaaaaaac atcatcaata gcaaagaaag
     3961 gtgagttacc tatgataata agtgggcagg cttttttaca taatacaact tatgggtcgg
     4021 ctgattctac ttttcttttt ccatgggcaa tacacgaata tgtgttagct actggtgata
     4081 ttggctacct ggaaaagcga tggaaatcca tcaccgatct tgtaaattgg ggatttttga
     4141 aagattctga tggtgatgga ttagtagaac atggatttac aggagttgct gaaaaattac
     4201 ctatacaaga ttctacatgg atggatcata tcgatagaag gaaaagtgct aatgatattc
     4261 aagccctatt ttacgaaagt ttgaaaatag gaagtgatct agcgaggatc gtaggagata
     4321 attataatag ggaaaaatgg caaaagtcag cagaacaact acgggataaa attgatttag
     4381 aatattggaa tgccactacc aaattttatc atgatacaat aagaaaggat ggctcaaagg
     4441 atccgagtat acgccccaat gcattggtac ttttgatgac ggatgcagtt cgagatagag
     4501 ccaaagctga atatgttctc acaaggattg aaaaagatga tattaccaca gcttggggcg
     4561 tcagaacatt gagtgcgtta gatcctaagt atcatccgag cctttatcat gatggtgctg
     4621 tttggcctct agttacaggg tgggccgcta taagtgagat taaattcaga aggaaagaac
     4681 aggcacttta ttacatagaa tcaatggcag aaaggatcct gtctgaaaat ggcatgtttg
     4741 cagaaacata tagaggcgat agacctgaac catttaattc ttgtatactt caggcttggt
     4801 cggtcgggat gtatacttat gccttgcgtg agatgatgtt aggg
//
LOCUS       DATABJ010000105         3367 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_514680, whole genome shotgun sequence.
ACCESSION   DATABJ010000105 DATABJ010000000
VERSION     DATABJ010000105.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3367
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_514680"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(303..3029)
                     /locus_tag="VHF44_01755"
     CDS             complement(303..3029)
                     /locus_tag="VHF44_01755"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004748 - ribonucleoside-diphosphate
                     reductase activity, thioredoxin disulfide as acceptor
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobalamin-dependent
                     ribonucleoside-diphosphate reductase"
                     /protein_id="HEX2124306.1"
                     /translation="MAGVTEFNDSKDNLIVNIKKRDGRVVNFTHSKISNAIYKALVVT
                     GKADYPLAERLANRVIEKMVQNGYGSTGKVAIASVEDVQDMVESILIEEGLSETAKAY
                     ILYRHERRKVRDEKMRILNKKVLDEVDKVFDINSLRVLAARYLLRDNNGEIIEGPKQM
                     FERVAILVALPDVLHDSQLFNLTGEHNQNIEEAEKYYAKIDDFDLKLKIGDYYLNKYH
                     FESLIRHYVSLAKIGRMKVGFKELLRMMAEGKLSVYEERIKEYYDLMVSRDFLPNTPT
                     LMNAGARLGQLSACFVLDMPDDMFKIMRSSTDAAMIFKSGGGVGINYSDLRPEGDIVA
                     STSGVASGPTSFMRIIDTITDVVKQGGKRRGANMGILEAWHPDIEKFITAKTKPGVFE
                     NFNVSVGVWEDFWKSLVNKDNHKYTLRNPRTHEPLKQIDSHQLMDLIAFSAWKSAEPG
                     VIFFDNINKYNPIINAKGGPLRATNPCGEQSLYPYESCNLGSINLANFVKRKADGMFE
                     FDWQKYEQAIRVSSRFLDNIIDMNKYPVEEIDINTKLTRRIGLGIMGIADLLFLLRIP
                     YDSNDGYEFMYKLAEAVSYYSMEESVAIAKVRGPFPLFKETDYVKGKIPIAGYYELPT
                     ETHAYNWDSLIKKIQKHGIRNSWTSTIAPTGTLSMIADTSNGVEPMFALVFEKRVTVG
                     RFFYTNRIFENVLKESGLYNDEILAKIANNYGSVRGLAEIPEWIQKTFVTAIDVHWTD
                     HIMAQAVWQKWIGNAIAKTINMPGDVTAEDVKYAYLLSHELGLKGVTVYRDGSRHEQV
                     LHINGNETKEKKFITRPSKYAVDYIRANVKEPYIKDQIEKIFEQTKIEEEELPTETIS
                     TSILLDTPNKSVQAPLVESNDDNTCPSCKARLIITEGCNLCIECGFSSCVSG"
BASE COUNT          944 a          673 c          531 g         1219 t
ORIGIN      
        1 tcctaaagaa tctgctaata tcttatccat gtctatagga gtagggcatg tctgtaccac
       61 atcttgatac tgttttttcc tgcagagatg ttattctttg tgctgcttgt gtatctttgt
      121 ttctgtaatg cttcctttaa actagacttt ggacttgttg ttgtagcaac atgtttattt
      181 ttatctatgt tagtaactta attgtttaat tggaataagt ttttttgggt ggcttatggt
      241 agcgttgaca gatgatgatt attacttgct agtcatccat aatgaggaag tgttttttgt
      301 tttcatcctg aaacgcagct gctgaagccg cattcaatac acaaattgca accttcagtg
      361 attattaatc ttgctttgca tgatggacag gtattatcat catttgattc cactagaggt
      421 gcttgtactg acttgtttgg cgtatccagc agtattgatg ttgaaattgt ttcggtaggt
      481 aattcttctt cttcgatctt ggtttgttca aagatctttt ctatttgatc tttgatatat
      541 ggttctttaa cgtttgcacg tatatagtcc acggcatatt tgcttggtct tgtaatgaat
      601 ttcttttcct ttgtttcatt accattgata tgtagaacct gttcatgtct tgagccatct
      661 ctgtatactg taactccttt taatcctagt tcgtgtgaca agagatatgc atacttgaca
      721 tcttctgcag taacatcccc tggcatattg attgtttttg caatggcatt gccaatccat
      781 ttttgccata ctgcctgtgc cattatatga tcagtccaat gtacatctat tgcagtaaca
      841 aacgttttct gaatccattc tggaatttca gccaaaccac gaactgaacc ataattattt
      901 gcgatttttg caagtatttc atcattgtaa agaccgcttt ccttcaatac attttcaaaa
      961 atcctattag tatagaagaa cctaccgact gtcacacgtt tttcaaaaac taatgcaaac
     1021 atcggttcaa caccatttga agtatctgca atcatagata atgtaccagt aggagcaata
     1081 gtcgatgtcc aagagtttct gattccatgt ttttgaattt ttttaattaa agaatcccaa
     1141 ttgtatgcat gtgtttctgt tggtaactcg taatatcctg cgataggtat tttacctttt
     1201 acataatctg tctctttgaa taagggaaat ggccctctta cctttgcaat agcaacactt
     1261 tcttccatac tatagtatga tactgcttct gccagtttgt acatgaattc atagccatca
     1321 tttgaatcat atggaattct aagtaggaat agtaagtcag ctatgcccat tataccaaga
     1381 cctattcttc ttgttagttt tgtattgata tcaatttctt ctactggata cttattcata
     1441 tctataatat tatctaagaa tctggaggag actcttattg cctgctcgta tttctgccaa
     1501 tcaaattcaa acattccatc tgccttgcgc tttacaaagt ttgcaagatt gatcgaacct
     1561 agattgcatg attcataagg atataatgat tgttcgccgc atgggtttgt tgcacgcaaa
     1621 ggtccgcctt ttgcatttat aattggattg tatttgttaa tattatcaaa gaagataaca
     1681 cctggttccg cacttttcca tgcgctaaat gctattagat ccattaattg atgtgaatcg
     1741 atctgcttta gaggctcatg agttctagga ttacgtagtg tatacttgtg gttatccttg
     1801 tttacaagcg acttccaaaa atcttcccag acgccaacac tgacattaaa gttttcaaat
     1861 acgccaggtt ttgtcttggc tgttataaat ttttcaatat ccggatgcca tgcctctaat
     1921 atacccatat ttgcgccacg tctctttccg ccttgtttta ctacatcggt tatagtatca
     1981 atgattctca taaaagacgt tggacctgat gcaactccag atgttgaggc aacaatatct
     2041 ccttctggtc gtaggtcaga gtaatttatt ccaacacctc cacctgattt gaaaatcatg
     2101 gccgcatcag ttgacgatct catgatctta aacatatcgt cgggcatatc aagaacaaaa
     2161 caagctgaca attgaccaag ccgtgcacct gcattcatca atgtcggagt gtttggcaga
     2221 aaatctctgg ataccatcaa atcatagtac tccttgatcc tctcttcgta tacgctcaac
     2281 ttgccttcag ccatcattct aagtagttct ttaaagccaa ctttcatacg gcctatcttt
     2341 gctagagata catagtgtcg aatgagagat tcaaagtgat atttgttcag atagtaatcg
     2401 cctatcttta attttagatc aaagtcatct attttagcat aatatttctc tgcttcttcg
     2461 atgttttggt tatgctcacc tgttaaattg aacaattggg aatcatgcaa tacatcagga
     2521 agtgcaacca gaattgctac tctttcaaac atttgttttg gaccttctat gatctcacca
     2581 ttgttatctc gtaacagata acgcgcagct aaaactctaa gggaattaat atcaaatacc
     2641 ttatcaactt catcaagcac cttcttattt aaaattctca tcttctcatc tcgaactttg
     2701 cgccgctcat gcctatacag gatatacgcc ttcgccgttt cagacaaacc ttcttcaatg
     2761 agaatagact ctaccatgtc ttgcacatct tcaacacttg cgattgcaac ttttccagta
     2821 gatccataac cgttttgaac cattttctct atcaccctat ttgccaatct ttctgctaat
     2881 ggataatctg ctttaccagt cactacaagt gctttgtaaa ttgcatttga tatcttagaa
     2941 tgcgtaaaat taacaactct gccgtctctt tttttaatat tcacgattaa gttatctttc
     3001 gagtcattga actcggttac acccgccatc tctttcttta tgatagattt agtttaaaaa
     3061 gctagctcta catattatat ataatttttt attatgaagc agtactaaaa gtattactaa
     3121 ctcattacta taatatcatt cccattatac aatatcagtg attaagtaca acaacctaac
     3181 aaatagaaca aagtgtaagg atgtccacca tctataaatt gttatgtccc cggataatga
     3241 cactggtaaa taaatatatt actatgctta aaggcagcca atttaagata ctaagctttg
     3301 aaatctaaaa tattcttttc aaccatttta tctcttacat agtatgtgat gataactcta
     3361 tgttaat
//
LOCUS       DATABJ010000106         2946 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_297948, whole genome shotgun sequence.
ACCESSION   DATABJ010000106 DATABJ010000000
VERSION     DATABJ010000106.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2946)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2946)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2946
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_297948"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..250
                     /locus_tag="VHF44_01760"
     CDS             <1..250
                     /locus_tag="VHF44_01760"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019894.1"
                     /note="catalyzes the formation of L-citrulline from
                     carbamoyl phosphate and L-ornithine in arginine
                     biosynthesis and degradation; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEX2124307.1"
                     /translation="GKDQEKTTREEAFLPRYQVNSDLLKNAKRDVIFMHCLPAKRGQE
                     VTSEVIDGSASVIWDEAENRLHVQKALMCMLMLKKRKK"
     gene            complement(284..514)
                     /locus_tag="VHF44_01765"
     CDS             complement(284..514)
                     /locus_tag="VHF44_01765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124308.1"
                     /translation="MILYGEEGNDLLEGGDGADYFDCGDSLDVIVYYDPSKGDTHTNN
                     CEDVIEHLIIITFLICSLFILKLLQIISSYLQ"
     gene            869..2152
                     /locus_tag="VHF44_01770"
     CDS             869..2152
                     /locus_tag="VHF44_01770"
                     /EC_number="1.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004420 - hydroxymethylglutaryl-CoA
                     reductase (NADPH) activity [Evidence IEA];
                     GO_process: GO:0016054 - organic acid catabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase,
                     degradative"
                     /protein_id="HEX2124309.1"
                     /translation="MYNLFDHLTLKKFYKMNQSERLRYLKKITGLSAQDIAILQDPSS
                     AFRFDNANTMIENAIGIFALPLGIATNFVINGKEYLLPMAIEEPSIIAAASKAAKIAK
                     SKGGFIAEADESIMIGQIQIVSLPVSEESAKINILSSKKEILELASSKSRFAVVKDLQ
                     VRQVQDKSQHNKGVMLLVELLVDVKDAMGANIVNTMCESIAPVVEQLTGGKAILKIIS
                     NYATKRLVKCKAIFDKDELGGQDVVERILYAYAFAYSDVYRAVTHNKGVMNGIDAVAL
                     ATGQDFRAIEAGVHAYAARDGTYRSITNWNKTEDGDLVGEIELPMAIGIVGGVASVHP
                     MAKLALKILKVKTAKELAIILAAAGLAQNFAAIRALASEGIQKGHMRLHARNIAAAAG
                     ATGNQIEIVANKIAEERTVNVDRAKEILALINKDN"
BASE COUNT         1071 a          464 c          535 g          876 t
ORIGIN      
        1 aggaaaagat caagaaaaga ctactagaga agaagctttc cttccgagat atcaggtaaa
       61 ttcagatctt ttaaaaaatg caaaaaggga tgtgatattt atgcattgtc ttcctgcaaa
      121 acgtggccaa gaagttacct cggaggtaat agatgggagt gcatcagtaa tatgggatga
      181 ggcagagaac agattacatg ttcaaaaagc tctaatgtgc atgttgatgc taaagaagag
      241 aaagaaataa tattaaatgg tataattagc aaatataata ttattattgc aaataactag
      301 aaataatttg taaaagtttt aaaatgaata aggagcaaat aagaaaggtt attattatta
      361 gatgttctat tacatcttca caattgttcg tgtgtgtatc gcctttactt ggatcatagt
      421 atactatcac atcaagacta tctccgcagt caaagtaatc tgcaccatct ccaccctcaa
      481 gcagatcatt tccctcctct ccataaagta tcatcaatac cttctccagc tactaaagtg
      541 tatcatcaaa tcctgcgaaa ataacgtcat ctccttttcc agcaaatagt tcatctcctc
      601 cctcgccacc ttctaaatta tcatctccgc ttggcaggat aagtcaataa gttatacatt
      661 agaatgtctt ataggtctta aatattattt atcggagact tagagagtta taaagattag
      721 cttttgttca gatatcagtc agtaagagta agattgcttg cttatttaat aatatcacct
      781 agcaaagtaa ttatctctag tattgctatt ttatagcatt attttgtctt tttacaagga
      841 tattcccacg tcacagttat taaagatcat gtacaattta tttgatcact tgacattgaa
      901 aaaattttac aagatgaatc aaagtgaacg tttacgctat ttaaaaaaaa taacaggttt
      961 gtctgcacag gatattgcta tattacaaga tccttcatca gccttcagat ttgacaatgc
     1021 taatacaatg atagaaaatg caataggtat atttgctctt ccacttggta ttgcaacaaa
     1081 cttcgtaatt aatggcaaag aataccttct accaatggct atagaagaac cttccataat
     1141 tgcagcagca agcaaagcag caaaaattgc aaagagtaaa ggaggtttta tagcagaagc
     1201 agatgaatca attatgatag gccaaataca gatagtctca ttacctgttt ctgaagaatc
     1261 tgcgaaaata aacattctat ctagtaagaa agaaatatta gagttggcta gctcaaagag
     1321 cagattcgct gttgttaaag atctgcaagt aagacaagtg caagacaaaa gccaacataa
     1381 taaaggagtt atgcttcttg tagaattact cgttgatgtt aaagatgcca tgggcgcaaa
     1441 tatagtaaat acaatgtgtg aatcaatagc tccagtagtg gaacagttaa ctggtggcaa
     1501 agctatatta aaaataattt caaattatgc aacaaagagg cttgtaaaat gcaaagcaat
     1561 tttcgataag gatgagctag gaggacaaga tgttgtggag cgaatcttgt atgcgtacgc
     1621 ttttgcatat tctgacgtat accgtgctgt aacccataac aaaggtgtaa tgaatggtat
     1681 tgatgcagtt gccttggcta caggccagga ctttcgtgca atcgaggctg gagtccatgc
     1741 atatgctgcc agagacggta cctatagatc aattactaac tggaataaaa cggaggatgg
     1801 cgatttagta ggtgagatag aattaccaat ggctattgga atagtcggag gagtcgcatc
     1861 agtccatcca atggccaaac tcgcgttaaa aattcttaaa gttaaaaccg ctaaggaact
     1921 tgcaattata ttagcagcgg ctggtcttgc tcaaaatttt gcagctatta gagcactagc
     1981 atctgagggt atccagaaag ggcatatgag gctacatgct agaaatattg cagcagcggc
     2041 gggtgccaca ggtaatcaaa tcgaaatagt tgccaataaa attgcagaag aaagaactgt
     2101 aaatgtagac agagcaaaag aaattcttgc attgataaat aaggataatt aaagtaacta
     2161 aacataaaat tgtcttgtaa tgaggtgttt ccattaatat tgacattata agtgttgtac
     2221 atcccaacag acaatagtaa cgctatatga aattgaatat ttggaaagcc tacgaaaagg
     2281 aggttctaat taaaatgatg aagttttgta ttactcaatt gtaagatcta tatcatttaa
     2341 tgataaattc aatcaagctc aatgattgtt gactatccta aaagaagaag aacaaaaagg
     2401 taaaaaaaac aatatcattt ataacatcat tacttacgtt aacttctttt actgtatgtt
     2461 tgaatacaat agaaattact aacaaaagtt atctcatcat cgtttaatac aacaatatct
     2521 tcatggaaat agattttgcc ttcaagcaat ctggaagcat gaaagtagaa gaatcattca
     2581 aagagtctag attgggcata ttcactttga cataggagag aaagaggtgt aaggtgaaat
     2641 gtattcaaac tcagtattaa tactattaat tagagagaag acagaatctt gtcaaaatgt
     2701 ctatggatga aagtcaggcc tcagcatttg caggaacctt tacctttgat aagtaacttt
     2761 tgataaattc tgtaaatcgg atatggcagc gcttcctgat aacgcaatta attcatccct
     2821 agagtgtcaa tatgttaaca cgacctttga atatattttt aatctaatct aaattaagaa
     2881 tatatttaat tattgatgag tttcatgtga aaaaactcat actaaagatt agtataaatc
     2941 aattct
//
LOCUS       DATABJ010000107         3412 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2032386, whole genome shotgun sequence.
ACCESSION   DATABJ010000107 DATABJ010000000
VERSION     DATABJ010000107.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3412)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3412)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3412
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2032386"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..283)
                     /locus_tag="VHF44_01775"
     CDS             complement(<1..283)
                     /locus_tag="VHF44_01775"
                     /EC_number="1.1.1.1"
                     /inference="COORDINATES: protein motif:HMM:NF012678.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEX2124310.1"
                     /translation="MELPRKILIGDGVISQLGSIISDLDANISRVAIITGSVVKARTG
                     AACMSSFHESCLENSWFISTDASMDSVHRLQSMIKEYSADIIVGLGGGRS"
     gene            complement(423..854)
                     /locus_tag="VHF44_01780"
     CDS             complement(423..854)
                     /locus_tag="VHF44_01780"
                     /inference="COORDINATES: protein motif:HMM:NF014047.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TRAM domain-containing protein"
                     /protein_id="HEX2124311.1"
                     /translation="MEDTDSDVTSKGGSYGSGGGYRSGGYGGGGYGGGGYGGGGYGRG
                     RGGGFGGPRPFRPAPVKVGDEFDVKIESMSKRGDAGVAKVEGLVIFVAGTKVGDSVRI
                     KITKVGRGYATAEMTTQSSGEGGEATPETLSSEGSETSEKA"
     gene            1060..2949
                     /locus_tag="VHF44_01785"
     CDS             1060..2949
                     /locus_tag="VHF44_01785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-CASP ribonuclease aCPSF1"
                     /protein_id="HEX2124312.1"
                     /translation="MQRKAPSNEITSQHIMAAILQNLPEESGLTKIEYEGPRIALYTK
                     NPSYMMQNTQLVSNIVNTIKKRIIVRTDESIRKSEDEAIQILHKSIPKEIKIIETFLD
                     PALGEATVFVKKPSLFVHAGEDFDNIDLIEKTGWKVRIRKAPLIMDIIRNINEILHNT
                     VNERIRFYREVGEKIYRSKLNEIAEASLITLGGFGEVGRSCVLLTTHESKILLDCGVN
                     GAAKNAPHSFPRFDITNFKMYEIDAVILSHAHLDHSGFLPALFKYGYHGPIYCSEPTL
                     PLMYLLQREYIKNRDYVSLFSLQDIDAVVMHTIPLSFGMVTDISPDIRLVLGNSGHII
                     GSALVHLHIGNGDHYLVYTGDMKFAKTLSLENASWNFPRVETIIIESTHGGKEDIFLH
                     REEAENRLFNSINDTISRKGKVLIPVSAAGLSQEIMLLINMYMKAGKMTETKVLVEKI
                     ISEATSIYEAYPEYLSKELNTEIMENEDSPFESSHFEVIESTTLECESAIILAPSSML
                     IGGPSIEYLKQICSDPNSKMILTSYQVIDTLGRSIEDGNRQITIGDQSINIECQIEKI
                     EGFSTHSDYNQLIAYINRLRPKLKRVLVNHGERANVQNLASSINKMFKIQTQHPLVQE
                     AIKLL"
BASE COUNT         1138 a          652 c          582 g         1040 t
ORIGIN      
        1 ctgacctccc tccgccaaga cctacgatta tatcagcaga atactctttt atcatacttt
       61 gcaacctatg aacagaatcc attgatgcat cagttgatat gaaccaagaa ttttccaaac
      121 atgattcatg gaatgaagac atacaggctg ctccagtcct tgcttttacg actgaaccag
      181 ttatgatcgc aacccttgaa atattagcat ccaaatcaga aataatagag ccaagctgag
      241 aaattacgcc atcaccaatc aatatctttc ttggcaattc cattaggtgg attggcgatg
      301 aactcactgg aaaattgcta ttatagcaca tataaattct tgtagttttt taaacaaaaa
      361 ataatatctt tagccctata gaaaaagaag atgattagat ctaatttttc tctagaacaa
      421 tatcatgctt tctcagacgt ttctgatcct tcagatgaca gcgtctctgg cgttgcttct
      481 ccaccttcgc cggaagattg agtagtcatt tcggctgtag catatcctct tcctacttta
      541 gtgatcttaa ttctgacgct gtctccaact ttggtgccag cgacaaaaat aacaagacct
      601 tcaacttttg caactcctgc atcgcctcgt ttgctcattg attcaatttt aacatcgaat
      661 tcgtcaccga ctttgactgg tgctggtcga aacggtcttg gacctccaaa gccgccgcct
      721 cgtcctcttc cgtatccacc gcctccatat ccaccgcctc catatccacc gcctccatat
      781 ccaccactac gatagcctcc gccacttcca taacttcctc ctttactagt aacgtctgaa
      841 tctgtatctt ccaaactata tcagcaaaat aatataatcg gcttactatt tcaactttaa
      901 tgttttaccg actgaaagtt gtcacgtttt ctgtagtatt gccaatattt ttgaaaatga
      961 tcgaaacatt ctttagatgg ctggtgaaat tatacattaa atcttgaaag agcaggctgc
     1021 aatcttaatt tagcaaccaa taattagtga caaatcaata tgcaacgcaa agctccctcc
     1081 aacgaaatta ctagccaaca tattatggca gcaatattgc aaaatcttcc cgaggaatca
     1141 ggactcacta aaatcgaata tgaagggcca cgtatcgcat tatatactaa aaatcccagc
     1201 tacatgatgc aaaatactca gctagtttct aatatagtca atacgataaa aaaaagaatc
     1261 atagttcgaa ccgatgaatc aatacgtaag tcagaggatg aagcaattca aatattgcat
     1321 aaatctattc caaaagaaat aaagataatc gaaacattct tagatccagc actaggtgag
     1381 gcgacagtct ttgttaaaaa gccttcattg tttgtccatg caggagagga ttttgacaat
     1441 attgacctta ttgaaaagac cggttggaag gtaaggatta gaaaagctcc tttaataatg
     1501 gatatcatca gaaatattaa tgaaattctt cataatacgg taaatgagag aattcgcttt
     1561 tacagagagg ttggagagaa aatttataga tctaagttga atgaaatagc agaagcaagt
     1621 ttaatcactc tcggcgggtt tggcgaggtt ggtcgttcat gtgtattact cacaactcat
     1681 gaaagtaaaa ttttacttga ttgcggggtt aatggagctg ctaagaatgc accacactct
     1741 tttccaagat ttgacataac caacttcaaa atgtacgaaa ttgatgcggt aattttgagt
     1801 catgctcatc ttgaccattc aggttttttg ccagctcttt tcaaatatgg atatcacggc
     1861 cctatatatt gttctgagcc aacattgccc ttaatgtatt tattacaaag agagtatatt
     1921 aagaatagag attatgtatc gttattctct cttcaagaca tagacgctgt ggtgatgcac
     1981 accattccct tatcctttgg gatggtcacc gacatatctc ctgacattag acttgtgctt
     2041 ggtaattctg gtcatataat aggatctgca ttagttcatt tacatatcgg taatggcgat
     2101 cactatcttg tttatacagg tgatatgaaa tttgcaaaga cgttatctct agaaaatgca
     2161 tcgtggaact ttccaagagt tgaaacgata atcatagaga gcactcatgg tggcaaggaa
     2221 gacatttttc tgcatcgcga ggaggccgag aatcgccttt tcaatagtat aaacgacaca
     2281 atcagtagaa agggaaaagt cttgattccg gtatccgctg ctggcttgtc tcaagagatt
     2341 atgcttctaa ttaatatgta tatgaaggct ggtaaaatga ctgaaacaaa agtacttgtc
     2401 gaaaagatca tttcagaagc aacatcaata tatgaagcct atccagaata cctttcaaaa
     2461 gagctgaata cggaaataat ggagaatgaa gactctccat ttgagtcaag tcatttcgag
     2521 gttattgaat ctacgactct agaatgtgaa tctgcaataa ttttggctcc ttcttcgatg
     2581 ttgattggcg gtccatcgat agaatatcta aagcagatat gtagtgatcc caattctaaa
     2641 atgattttaa cttcttatca agtgatagac accctaggta gaagtattga agatggcaat
     2701 cgacaaatca caatcggtga ccaaagtatc aatatagaat gccaaattga aaagatagag
     2761 ggatttagta ctcatagtga ttataaccag ttgatagcat atattaatag attaagacct
     2821 aaacttaaac gagtattagt taatcatgga gaaagagcta atgtacagaa tctcgctagc
     2881 tctatcaata agatgttcaa aatccaaacc cagcatccat tggtacaaga ggctataaaa
     2941 ttactctaac ctttgatcat tggtagtatt gcgataaaca tatactacta tgaagaataa
     3001 ataaaatata taattgaatc agatagttta ctcatactaa tatgacgcat ctagatgaaa
     3061 taatatactg ctattgaaaa actattaagg tcgatattat attattatcg gactatgtgg
     3121 tattaataag tataaagata atattaggac catattatcg cccaaaaaaa tcatcatttg
     3181 ttgcttaaag tttcacctat gatcctcttt tctctttctg ccagtagcaa acagaggaac
     3241 atgtttgaga acaatagatt atatataaaa gattgcttac cacttatgat aaaataaatg
     3301 ctatcagagt actccatctt tagaattctt attattctta tactcagata ggttttatag
     3361 gaaatctact taacctatca tgatagaata ttaagatact gctttacact tg
//
LOCUS       DATABJ010000108         2372 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_516338, whole genome shotgun sequence.
ACCESSION   DATABJ010000108 DATABJ010000000
VERSION     DATABJ010000108.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2372)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2372)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2372
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_516338"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(96..998)
                     /locus_tag="VHF44_01790"
     CDS             complement(96..998)
                     /locus_tag="VHF44_01790"
                     /inference="COORDINATES: protein motif:HMM:TIGR03026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003979 - UDP-glucose 6-dehydrogenase
                     activity [Evidence IEA];
                     GO_function: GO:0016616 - oxidoreductase activity, acting
                     on the CH-OH group of donors, NAD or NADP as acceptor
                     [Evidence IEA];
                     GO_function: GO:0051287 - NAD binding [Evidence IEA];
                     GO_process: GO:0000271 - polysaccharide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide sugar dehydrogenase"
                     /protein_id="HEX2124313.1"
                     /translation="MKKIGIIGSGVVGSATGKGFHRLGHDVLFYDIAKQRLLTLKEEG
                     YQIASSVKDIIDKTDISFVCVNTPNNNSGEQDLSQLMSVLYDLTNSLRWIDRRYKQQQ
                     HPHLIVFRSTMLPGTMRSVVINYLQTNCPSSRIGRDYDVCYNPEFLRQNTAFDDFFRP
                     DRVVIGEDRKGASQPLKEIYQQLTENIIVTSFEAAEMIKYTSNCFLSLKISFFNEIGL
                     VCKQMGIDDKAVSLGVSMDKRIGNYGTQFGKPFEGACLPKDTEALAGFIRNLQLNPDL
                     LQVALDINRKMEELTSSKPPVQRK"
     gene            1229..>2372
                     /locus_tag="VHF44_01795"
     CDS             1229..>2372
                     /locus_tag="VHF44_01795"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2124314.1"
                     /translation="MSLGISFSSLILLPTIALALIMISVISLSLFLPYWFDSYSLGND
                     ILSLATSFTDEVGSIILRGAQTFSLYIPLGIIGIWRWGVWIFKKSCSLYYKPIESENR
                     VENYSMGIITPVYNEDPRVFRTALDSWQSNNPDELIAVIDQKDTHCITVFQEFAQDKP
                     WAKLIVTSKAGKRPALADGILASKCDIVALVDSDTIWDHNIRDKLLAPFQNPRIGGVT
                     TRQHPIERHSVWQKMTDIFWDMRNYYDLPSQTAMAKALTCLSGRTSLYRRQIILPKLN
                     EFLNEILFGRKKESGEDKCLTRLVQRDGWETYYQSNATVFSSAASDFKTFWSQRLRWS
                     RNSHNSDIISLWDGWAWKKPYLAFYMIDRFITIFTLFFGPIFFSISV"
BASE COUNT          738 a          423 c          432 g          779 t
ORIGIN      
        1 cgtaataatt atagttggag ttattgtaaa ttgtattatc tatgagaata ttattagaat
       61 cattaaaaaa ttgagcagct aaaggatagc agctcttatt ttcgttggac aggcggtttt
      121 gaggacgtta gttcctccat ctttcggtta atgtcaaggg ctacctgaag caaatctgga
      181 tttaattgca aatttctaat aaaaccggct agtgcctcag tatcttttgg taaacatgct
      241 ccttcaaatg gtttgccgaa ttgtgttcca tagtttccta tcctcttatc catggaaaca
      301 cctaagctga cagctttatc atcaattccc atttgcttac atacaagtcc gatttcgtta
      361 aagaacgata ttttgagtga aagaaagcaa ttggaagtat actttatcat ttcagcagct
      421 tcaaaactag ttacgatgat attctcagtt aattgctggt agatctcctt gagaggttgc
      481 gacgctcctt tacggtcttc gcctatgact actctgtctg gcctaaagaa atcatcaaaa
      541 gcggtattct gcctcaagaa ttctggatta taacatacgt catagtctct tccaatcctt
      601 gatgatggac aatttgtttg taaataatta atgactacac ttctcatggt tccaggaagc
      661 attgtacttc tgaaaacaat aagatgagga tgctgctgct gcttatatcg tctgtctatc
      721 cacctaagag aatttgttag gtcgtagaga acagacatga gttgtgataa atcctgctcg
      781 ccactattat tattaggagt atttacacaa acaaatgaaa tgtccgtttt atcaataata
      841 tctttgacgc ttgatgcaat ttgatagccc tcttccttta gagtaagtag tctctgttta
      901 gcgatatcat aaaatagtac atcatgacca agtctgtgaa agcccttacc tgttgcactt
      961 ccaacaactc cggatccgat gattccaatt tttttcataa tcatattttt tagccattgg
     1021 ccatctcagg ccttcttatc gagtgttaaa atgatatata tattgtccga tatcttttta
     1081 ttttataagc ttcctattta tctcagcaga atatctttta gatgtatgat agggaagttt
     1141 ttagagcgga atttttccat tagataaata ctatgttaat tcttcataga caatggatat
     1201 ataaagaaga aaagaagaaa tttggttaat gagccttgga ataagtttct cttctctaat
     1261 acttcttcca acaattgcct tggcactcat tatgatatct gttatttcct tatccctatt
     1321 tcttccctat tggtttgatt cttactcact tggaaatgat attttaagtt tggctacatc
     1381 attcacggat gaagtaggta gtataattct tagaggtgct caaacatttt cactctatat
     1441 acctttagga ataatcggca tttggcgatg gggggtatgg atttttaaga aatcctgttc
     1501 actatattat aagccaatcg aatcagaaaa tagagtggaa aattatagta tgggtataat
     1561 aacaccagtc tataatgaag atccgagggt tttcagaaca gcattggatt catggcaatc
     1621 gaataaccct gacgagttga tcgcagtaat cgatcaaaaa gatacgcact gcatcacagt
     1681 atttcaggaa tttgctcaag acaaaccttg ggcaaaactc atagttactt caaaagctgg
     1741 caaaagacca gcattggcag atggaattct agcgtcaaaa tgcgacatcg tggcgttagt
     1801 agattcagat acaatatggg atcataatat aagagataaa ctgcttgcgc cctttcaaaa
     1861 tcctagaata ggtggagtta ccacacgaca gcatcctata gagcgtcatt ctgtatggca
     1921 aaagatgaca gatatctttt gggatatgag aaattattat gatttacctt cccaaacagc
     1981 aatggcaaaa gcattgacat gtctttcagg aagaacttca ttatataggc ggcaaataat
     2041 tttgcccaaa ttaaatgaat ttctaaatga gatccttttt ggaagaaaaa aggaatctgg
     2101 agaagataaa tgccttacaa gattagttca gagagacggc tgggaaacat actatcaaag
     2161 caatgcaaca gtattctcct cagcagcttc agactttaag acattctgga gtcagagact
     2221 tcgctggtca agaaatagtc ataattctga tattatcagc ttatgggatg gctgggcatg
     2281 gaagaaacca tatcttgctt tttatatgat agacagattt atcacaatct ttacactgtt
     2341 ctttggccct atattctttt caatttcagt tt
//
LOCUS       DATABJ010000109         2058 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1602935, whole genome shotgun sequence.
ACCESSION   DATABJ010000109 DATABJ010000000
VERSION     DATABJ010000109.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2058)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2058)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2058
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1602935"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            435..1517
                     /locus_tag="VHF44_01800"
     CDS             435..1517
                     /locus_tag="VHF44_01800"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEX2124315.1"
                     /translation="MGEQVKQNIDQNKIQEFMNKAIGDIASSSSTMLIILGERLGLYK
                     SMAQANGPISAEELANKTGTVERLVREWLANQAASGYIEYDPSSRKYRLPPEHALALA
                     DENSPVYIQGIFKAIKSYFKDEEEFLKMFRGERTFSWMDHNPFMAEGFAEFFKAGYIG
                     NLVNSWIPAVDNGRILEKLQKGAKVADIGCGFGITTLMMAKTYTNSSFTGFDFHKESI
                     QRANELAKRENLDNVKFEVSSASEFPGNDYDFVTFFDCLHDMGDPQGALTHTKDVIKK
                     DDGVCMIVEPFAQNELENNLNPIGRTFYAASTLICVPNSLAFNGPALGAQAGENRIKD
                     LVNKSGFSHFKRVLETPINIIYEAKP"
BASE COUNT          792 a          282 c          381 g          603 t
ORIGIN      
        1 aatgataact gttccgaagg cctattgcac aacaactttc agagattaat gtccttacta
       61 ttactatcac aatatatgac accattagga gaaccatttc atacagagaa atgaaagata
      121 actgggatta atagaggcta acaagattat acccatacta actagtgcat ttcttcatgt
      181 tagtaaaatt ctttatccta gccttgaaag aaaaatgaat gatttatata ttttgctaaa
      241 gattaggagc taatctaatc aagagtcaac aacttaatga taagtaattc taaatagaga
      301 cagagaaaaa gatacaagca ttatatttag caaaggttac agatcacgat tgtttatcta
      361 aacaatcata ataagaaatt gaagcgtcat tcataattct taaatataaa taatattacg
      421 atacttctta taaaatgggc gaacaagtaa aacaaaatat tgatcaaaat aaaatccaag
      481 aatttatgaa taaagcaata ggagacatag caagtagctc tagtactatg cttataattc
      541 ttggggaaag acttggattg tataaatcaa tggcgcaagc aaatggccca atttcagccg
      601 aagaactagc aaataaaact ggaacggtgg aaaggttggt aagagaatgg ttagcaaatc
      661 aggcagcaag tggatatata gagtatgatc ctagcagcag aaaatataga ttaccaccag
      721 aacatgcttt agcattagct gatgagaaca gtcctgtata catacaaggt attttcaaag
      781 ctataaaatc gtattttaag gatgaagagg aattcttgaa gatgtttaga ggtgaaagaa
      841 ctttttcatg gatggatcat aatcctttta tggcagaagg atttgcggaa ttcttcaaag
      901 ctggttatat tggcaactta gttaattcat ggatcccagc agtggataat ggaagaatcc
      961 ttgaaaaatt acaaaaaggt gccaaagtag cagatattgg ttgtgggttt ggtattacta
     1021 cattgatgat ggcaaaaacg tatacaaatt ctagctttac tgggtttgat ttccacaaag
     1081 aatcaattca aagagcaaat gaacttgcaa aaagagagaa tctagataat gtaaaatttg
     1141 aagtgtcatc agcatcagaa tttcctggca atgattatga ttttgtaacg tttttcgact
     1201 gtctacatga tatgggagat cctcagggag cattaactca tacaaaagat gttatcaaaa
     1261 aagatgatgg tgtttgtatg attgtagaac cttttgcaca aaatgaatta gaaaataact
     1321 taaatccaat aggtagaaca ttttatgctg cctctacgct gatatgtgtt ccaaactcct
     1381 tagcttttaa tggacctgca ctaggtgcgc aagcaggaga aaacagaata aaagatctag
     1441 tgaacaagag cggtttttca cactttaaaa gagtcctgga gacaccaata aatataatct
     1501 atgaagctaa accataatta gaaaatagag atgaagatag agagaataag agagaaaagt
     1561 gtaatgtgaa aataaataac caataacaaa ctgaactttt tgaaaaacta gttttgttat
     1621 cttcttggaa atgataaatc attttttatc ttatttttca tacatatatt ggtatctaga
     1681 ttaatgaaac aaattgcatt tcgggtgcat ttgcctatta ttgggattta gtaaaaatag
     1741 cagagaaaaa gaaggccatt caagggagca aacactgtct tgtgaattaa aatcagaatc
     1801 ctggagaact aataagtatg aatgatcaca ctgtatttag aattagttgg ctagatgcaa
     1861 taagtaaatt ataagcagtt gctacaataa ctaatttggt gggattagga aggtttttag
     1921 attttctcaa ccttcagaaa ctggtactct agaagataaa gtaataatgc agaaaaagga
     1981 aaaatatgtt aatgtctagg attttcatag cctcctgaag tttatttaag acaagcagca
     2041 ctatatacta gatactat
//
LOCUS       DATABJ010000110         1727 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_299974, whole genome shotgun sequence.
ACCESSION   DATABJ010000110 DATABJ010000000
VERSION     DATABJ010000110.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1727)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1727)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1727
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_299974"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(165..270)
                     /locus_tag="VHF44_01805"
     tRNA            complement(join(165..224,256..270))
                     /locus_tag="VHF44_01805"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(202..204),aa:Arg,seq:cct)
     gene            complement(583..>1727)
                     /locus_tag="VHF44_01810"
     CDS             complement(583..>1727)
                     /locus_tag="VHF44_01810"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124316.1"
                     /translation="PKGPKVQRTIDEICKTRIHDAYFIMSEVEFENYFREYKSALLPP
                     LEYAATHPEYVKVGWRPSESKIVEALIWRTDFPYFKQKKAQEMFEQLISHLDKNGYDS
                     IKIKLLAEILWLADLAVTYMGSDPIRAWDRVTNLYDELYLPKFEAVSRTDAFFSDFVE
                     IELFKELIRMRHFPDIFRQRWNLVYQFFHEGNPSTQLNRTITKARNLYLRINLELEMR
                     RGEMLQNIAINNWAEYFIGIGKDQSEVLRAKSKFAELDPPNASAFWGDTHKLVPNIMD
                     KSIDNFLIVLPQNFRPLNSIEEKLSFRSLLAIMVSKLTANGTLQILTDLEKDSVKFKE
                     IIAIIVDTGFQLDLNYTGKTYFPKDWKDPDFINEKTPQILIFRSEK"
BASE COUNT          523 a          320 c          283 g          601 t
ORIGIN      
        1 tagcccattt atgtttagat attttctggc ttaaagatga aagtcttgaa gattaaaaaa
       61 cattccagtg ccagatatta tgaaaagagt ctgattctag ttcaagcaat tatttttctc
      121 acttttttat ttcctagaac cctaaatgag aactaatatc aatgcgggct cggagggatt
      181 tgaaccctcg acctgacgct taggaggcgt ctgcgctatc cattttacgc ctatttgtat
      241 tgttatttga atagtctgcg ctacgagccc taacattttg aactcgaggg ccaaatttaa
      301 atattgatac taaagaataa tatttcattt ttagtaatga tgacttttca taactaatat
      361 ttttaaccta tctctctgtt tccttcataa atccatgaga tttgctttag cctgggatta
      421 tgatatgtgt gtataccaga atttttaaac aatatgcaga aataccgtca agcagaccct
      481 aaactgccta cagttactat cctataatag gaattgaagg taaaaagtat gatataagga
      541 agttggctgc tctgtgctgt ataattatac ctaaaattat gattattttt cagaacgaaa
      601 gatcagtatt tggggtgttt tttcattaat aaaatcagga tccttccaat cctttggaaa
      661 gtatgtcttt cctgtataat tgagatctaa ttgaaaacct gtatcaacta tgatcgctat
      721 tatttccttg aatttcacac tatctttttc caaatcagtt agtatctgca gggttccatt
      781 ggccgttaat ttcgatacca taattgcaag caaagatctg aatgataatt tttcttctat
      841 ggagttaagt ggcctaaaat tctgaggtaa cactataagg aaattatcaa ttgacttatc
      901 cataatatta ggtactaact tatgtgtatc tccccagaaa gctgaagcat ttggaggatc
      961 cagctcggca aacttagact ttgctcgcaa tacttcactc tgatcttttc caattccgat
     1021 aaaatactct gcccaattat ttattgcaat gttctgtagc atctcgcccc ttcgcatttc
     1081 caattcgaga ttgatcctaa gatacaaatt tctcgccttg gtgattgttc tattcaattg
     1141 tgttgaagga ttgccttcgt ggaagaactg atatactaaa ttccatcttt gtctaaagat
     1201 atcaggaaag tgtcgcatgc gaattaattc cttaaagagt tcgatctcca caaaatccga
     1261 aaagaatgca tcagttctag aaactgcttc gaatttcggg agatataatt catcataaag
     1321 atttgtaact ctatcccatg ctctaatagg atcagaaccc atgtaagtta cggcaagatc
     1381 agctagccat agaatctctg caagtagctt tattttaata gaatcatatc cattcttatc
     1441 aagatggctg atcagttgct caaacatttc ctgagctttt ttttgtttaa aatatgggaa
     1501 atcagtacgc cagattaatg cctctacaat tttgctttca ctaggcctcc atccaacctt
     1561 gacatattct ggatgggttg cagcatattc tagaggtggc aataatgcgg atttatattc
     1621 acggaaataa ttttcaaatt ctacttcact cattataaaa tatgcatcat gaattcttgt
     1681 tttacatatc tcatcgatag ttctttgaac ttttggaccc tttggca
//
LOCUS       DATABJ010000111         6576 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_516829, whole genome shotgun sequence.
ACCESSION   DATABJ010000111 DATABJ010000000
VERSION     DATABJ010000111.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6576
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_516829"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..854
                     /locus_tag="VHF44_01815"
     CDS             <1..854
                     /locus_tag="VHF44_01815"
                     /inference="COORDINATES: protein motif:HMM:NF024579.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124317.1"
                     /translation="EEIPLTEATEMAKKYPRIRGSIMMEGIELAERHGFRTYIYKGSL
                     KDIKKRISQGIPPIVILPGIRETVQHATIVSGYNPEENRILTYVPEPDTIGAIPERKF
                     EQDWDQEDMITLILIPKDMEDIFKNENLKFKDSNRLCFEAEKLRIQDKTNLAIEKLLK
                     SVKLDEDNPQSWCMLGGIYNELNLDDALSCYQKTIKLNPRYYLAYRGLGNYYLKKKEY
                     SLADSYYTKAIDINAYRFAPIYKNRAIARLQLNNNSGAKEDLLKYIEQIPNAADKKNI
                     EDTIRQI"
     gene            1017..2090
                     /locus_tag="VHF44_01820"
     CDS             1017..2090
                     /locus_tag="VHF44_01820"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124318.1"
                     /translation="MSNIIKKLELEHMTVTKTLCEESCFVFKVNDIVEAACSTKELFG
                     IDRVAIAKQVPNTFSQVVSAIIATGKQIILPKEKFFIKVQISSKAKVNYVGRDIAFVS
                     AGDLIEQLASTGARLAKNEHEADKIILSYIGKDYGYICIQIDKALGGMPFGYQNVRVL
                     CSIHNVLSAISSLIAIKSGFVPELLILYANSEELTQNVKLFGHIADRMGLKRHNLRIA
                     QIDLYDGLDQGLKVMLKESISAKILLQLPGKGVVLPLSATIYPAWFVEWTMKKIILAK
                     KTPWMPLMLLTDEIQQIAKVFDLEEKLLSIDNLSISTLFEKKEYRKHLRKVDILSKKA
                     MKNMKTISLKVGPNYLHDIIDAV"
     gene            complement(2043..3215)
                     /locus_tag="VHF44_01825"
     CDS             complement(2043..3215)
                     /locus_tag="VHF44_01825"
                     /inference="COORDINATES: protein motif:HMM:NF024918.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family protein"
                     /protein_id="HEX2124319.1"
                     /translation="MAKAYFTPYGVGLGHASRMMMLAERLGDSDVDIRFSSFGEGAHY
                     ISMKGYECMTVPPVEFAWSIEGGFSVKYTISNIPLWFTNFPRQVRDEINNIIKYDPDI
                     VVSDTRLSSLVASKILNIPSIVILNQVKLLLSPRLREFKISRTWEKMNGELLGLIWRI
                     ADRILVPDLPPPYTIAEQNTWDTSSVMKKLEYVGFTAPKSYITEAQLRETAAHLGIDR
                     SKPIVFIHISGPLKTRIPIIRTSIEACKSLRPEIQYVISEGRPGGDIKPRKITRLGWY
                     YEWCPIRDEIFAMSDVLVLRGGHTTISQAIQFGKPLITIPIENHSEQLGNSNKIAKIG
                     IGIRLEANKIKANQITYAIHQLLDDNRFQQKAEELMRLTERLDGIDNIVKIIRSYF"
     gene            3343..4710
                     /locus_tag="VHF44_01830"
     CDS             3343..4710
                     /locus_tag="VHF44_01830"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2124320.1"
                     /translation="MFVRKTLKVMRCSDCNNNDNNLVYMTLVALFVISLFSCSPNQTF
                     ASIQSDLEKIDAKGLVILEGASLIDGTGSPPRNDSVVILKDERILTVTDKGNYTMYPR
                     DSEIVNLTGRFLIPGLFDMHAHVASVLSFSYNQTVSENTLKALLDNGVTTIRNPAGPT
                     KESVALRDAVAAGQIKGPQIFTAGRLINALPFPTRFVETMANTEAEVREEVKRQADAD
                     VDYVKLYVGLYPNLVKAAIDEAHNQGIKVIGHLYLTSWTDAANLGIDALTHGVPVNPF
                     LLSKDTREIFIENGRGPFDHFLWLNLVDLNSTEINEMINALVKNKVPVDPTLTIYEAI
                     LKDDPQNQYLWSKVLQLTKILYDHGVTIMSGTDIPNFGLIPGVSLHHELELLVNAGIN
                     PLNVIKIATSNGAEALGILDDVGTIESGKQADMNILNANPLRNIRNIGTIEGVIEDGQ
                     FFNHK"
     gene            complement(5311..6408)
                     /locus_tag="VHF44_01835"
     CDS             complement(5311..6408)
                     /locus_tag="VHF44_01835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0055052 - ATP-binding cassette (ABC)
                     transporter complex, substrate-binding subunit-containing
                     [Evidence IEA];
                     GO_function: GO:0042626 - ATPase-coupled transmembrane
                     transporter activity [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEX2124321.1"
                     /translation="MGNAGGVCITLTIAATIILVAAIVNVIHTPSAYSQTIDTGNSEG
                     EGNTAKKTLKIGYFPNINHAQAVIGLGNGTFQKALGDNIEVKTTIFNAGPSAMEALFA
                     KQVDVTYVGPNPAINAYVVSQGKDVRIISGASSGGAVFVVRNDSGIQSTKDFANKKFA
                     SPQLGNTQDVALRKYLLDNGYKTKENGGNVEVVPAKNADILTLMLKKDIDGAWIPEPW
                     GERLVKEANARIFLDERDLWPPKGQFVTGNIVARTDYLQSNPDVIKKLLTAHVDETEW
                     INSHKEEAIKAFNVELSKITGKTIPEDELYSALSRMEITYDPVKESLFQSANSAFDIG
                     FLGKTRPDLSGIYDLDLLNAVIAEREKETIK"
BASE COUNT         2214 a         1123 c         1154 g         2085 t
ORIGIN      
        1 gtgaagagat accattaaca gaagcaacag agatggcaaa gaaatatcct agaattagag
       61 gatctataat gatggaagga atagagcttg cagaaagaca cggttttagg acatatattt
      121 ataaaggctc attgaaggat ataaaaaaga gaatatcaca aggaattcct ccaatagtta
      181 ttctaccagg tattcgtgaa actgtgcaac atgcaactat agtatctgga tataatcctg
      241 aagagaacag gattctaacc tatgtaccag aacccgatac tataggcgcc attccagagc
      301 gaaaatttga acaagattgg gatcaagagg atatgattac gttgatactc atacctaaag
      361 atatggaaga tattttcaaa aatgaaaatc tcaaatttaa agattcaaac agactatgtt
      421 ttgaagcaga aaaattacga attcaagata aaacaaatct tgctattgaa aaactactta
      481 aatctgttaa attggacgag gacaacccgc aaagctggtg catgcttggc ggtatctata
      541 atgaactcaa tttagatgac gcccttagtt gctatcaaaa aacaattaag cttaacccaa
      601 gatattatct tgcatataga ggtctgggca actattatct aaagaagaaa gagtattctc
      661 ttgcagacag ttactataca aaggcaattg atatcaatgc ttatagattt gctccaatat
      721 acaaaaatcg agcaatagca agattacagc tcaacaacaa ttctggtgct aaagaagatc
      781 tattaaagta tattgaacag attccaaatg cagcagataa gaaaaatatt gaagatacta
      841 taagacagat ttaaaagtaa aaaataataa tacatataga aagagagaga gaaaggatcc
      901 cttaattctt tttaaaaaca tcagatataa ttatccgaga ttggaataaa aatcatttga
      961 atgatgttct actagtcttc ccgtcagctt tttcagctaa ctgcaaaaat atgttaatgt
     1021 caaatataat aaaaaagctt gaattagaac atatgacggt tacaaaaacc ctctgcgaag
     1081 aatcatgctt tgtctttaag gttaatgaca tagttgaggc tgcatgtagt acaaaagaat
     1141 tatttggaat agatagagtt gctatagcta aacaagtccc aaatactttt tctcaagttg
     1201 tttcagccat tatagcaaca ggaaaacaga tcatactgcc gaaggaaaaa ttttttatca
     1261 aagttcagat aagtagtaag gcgaaggtaa attatgtagg aagagacata gcttttgttt
     1321 ctgctggtga tcttatagaa cagttagcat ctacaggagc acgtcttgca aaaaatgaac
     1381 atgaagctga taaaataata ctttcttata ttggtaaaga ttatggatac atctgcattc
     1441 aaatagataa ggcacttggt ggcatgccat ttggatatca aaatgttaga gtattatgca
     1501 gtatacataa tgttctctct gcaatatctt ctttaatagc tataaaatcc ggttttgtgc
     1561 ccgagcttct aatattatat gcaaattctg aggagcttac tcagaatgtg aagctatttg
     1621 gacatatagc tgatagaatg ggtctcaaga gacataatct tagaatagca caaattgatc
     1681 tttatgatgg attagatcaa ggtctaaaag tgatgttaaa agaaagtata tctgctaaaa
     1741 tcttacttca gttgcctgga aaaggagttg tgttaccatt aagtgcaacg atttatcctg
     1801 catggtttgt agaatggaca atgaaaaaaa tcatacttgc aaaaaagaca ccttggatgc
     1861 cattaatgct tttgacagat gaaatacagc agattgcaaa agtcttcgac ttggaagaaa
     1921 aattactgtc tattgataac ttgagcataa gtacattatt tgaaaagaaa gaatatagaa
     1981 aacatttaag aaaagtagat atcctatcta aaaaggcgat gaaaaatatg aaaactattt
     2041 cattaaaagt aggacctaat tatcttcacg atattatcga tgccgtctag tctctcagtt
     2101 aatctcatca attcttcagc cttttgttga aatctattat catctagcag ttgatgaatt
     2161 gcatatgtga tctggtttgc ttttatctta tttgcttcta gcctaatacc tatgccaatt
     2221 ttggcaattt tatttgaatt acccaactgc tcactatgat tttctatagg tattgttatc
     2281 aagggtttgc caaattgtat agcttgcgag atagttgtgt gtcctcctcg taataccagt
     2341 acatcgctca ttgcaaaaat ttcatcacga ataggacacc actcataata ccatcctaat
     2401 ctcgtaattt tcctaggttt tatatcaccg cccggtcttc cttcagagat cacatattga
     2461 atctctggac gaagcgattt acatgcctct atggaagttc ggattatagg aatacgtgtc
     2521 ttcaatggtc cactaatatg aataaacaca ataggttttg atctatctat gcctaaatgc
     2581 gcagctgttt ctctgagttg tgcttcggta atatatgatt ttggcgctgt aaagcctaca
     2641 tattctaatt ttttcattac tgaactagta tcccaggtat tctgttctgc tatggtataa
     2701 ggtggaggta gatctggtac cagaattctg tctgctatcc tccatataag gccaagtaat
     2761 tctccattca ttttttccca ggttctggat attttaaatt ctcgaagtct aggcgacagt
     2821 aaaagtttta cttgattcag aattactatg gatggaatat tcagaatttt tgaagcaaca
     2881 agagaagata accttgtatc tgaaacaaca atatcaggat catattttat tatattatta
     2941 atttcatctc tcacttgcct tggaaaatta gtgaaccata acggaatgtt tgaaatagta
     3001 tatttgactg aaaatcctcc ctctatactc caggcgaatt caacaggagg aacggtcata
     3061 cactcatatc ctttcatcga aatgtaatga gctccttcac caaaagatga aaatctaata
     3121 tcgacatctg aatctccaag tcgttctgcc aacatcatca tacgacttgc atggccaaga
     3181 ccgaccccat aaggtgtaaa ataggcttta gccaaattaa gagatttaaa aaggattgat
     3241 tatatattac ttaaaaagac gaataatatt tgctatatta gcagtcagtt gtaattaaaa
     3301 agattaaaaa gagcaatcat ttaacgaggg agcaacaatg caatgtttgt caggaagact
     3361 ttgaaagtaa tgagatgttc tgattgcaac aataatgata ataatctagt ctatatgaca
     3421 ttagttgcat tatttgttat ttccttattt tcctgttctc ctaatcagac atttgcatcg
     3481 atccagtcag acttagagaa aatagacgct aagggtcttg ttatattaga aggagccagt
     3541 ttaatcgatg gcaccggttc tcctccacgt aatgattcag tagtcattct caaggacgaa
     3601 cggatactga cagtaactga taaaggaaac tatacaatgt atccaagaga ctcagagatc
     3661 gtaaacttaa caggtcgttt ccttataccc ggcttatttg atatgcatgc acatgttgca
     3721 agcgtattga gtttctcata taaccagacc gtctctgaga atacattaaa ggcattatta
     3781 gataatggag tcacaactat tcgtaatcca gccggcccta cgaaggagtc agttgcacta
     3841 cgtgatgctg tagccgcagg ccaaatcaaa ggtcctcaga tctttactgc agggagactg
     3901 attaacgccc tgccgtttcc aactaggttc gtagagacta tggcaaacac agaggcagag
     3961 gttagagaag aggtaaagcg tcaggcagat gctgatgttg actatgtcaa gttgtatgtt
     4021 ggactttatc ctaatttagt aaaagctgct atagatgaag ctcataacca aggaataaaa
     4081 gtcataggac atttgtatct gactagttgg actgatgctg caaacctagg aattgatgct
     4141 cttacacatg gagttccagt aaacccattc ttattatcaa aagatacacg agagattttt
     4201 attgagaatg gtcgtgggcc ttttgaccac tttttatggc ttaatttggt agacctcaat
     4261 agtacagaaa ttaatgaaat gataaatgca ttagtaaaaa ataaggttcc tgttgatcct
     4321 actttgacta tatatgaagc catactaaaa gatgatccac aaaaccaata tctttggtcc
     4381 aaagtcttac agctgactaa aatattgtat gatcatggag ttacaatcat gtcaggtaca
     4441 gatataccaa actttggact tattccaggc gtaagtttac accatgagct tgagctttta
     4501 gtcaatgcag gtattaaccc attaaatgtc ataaagattg caactagcaa cggagcagaa
     4561 gcattaggga tacttgatga tgttggaaca atagaatctg gaaagcaagc agatatgaat
     4621 atacttaacg caaatccact cagaaatatt agaaatatag ggactattga aggagtaatc
     4681 gaagatggtc agttcttcaa tcataaataa aagatacaat agcaatgaag taaattatac
     4741 aagtgaaaat aagtatatat gctattcaga attgttcttc caattgcatt atacgagtag
     4801 gattttctac tcaattggaa gatactatac taaaaatcaa gtttatgtta tgctctcttg
     4861 tgttctttga ttaatagggc agcattgact gattttgtct tatcttgtct tgtattatta
     4921 tcaagcaatt aggatttatt ttccacttct atacaaaaag tttaatcaat cctttgatcc
     4981 ttgcttattg tctctttcgc gtatggtaat gactataaaa tcatcagaat caatttgcaa
     5041 tataaataat gaagtcttta agtttgatta aattcagaac atgtccattt aattagttgt
     5101 caaatgccaa gaggttagct taagatgata tcaaatgaat gtaaacaagg attatgtttg
     5161 gttatattgc actcgtgtaa atgaacacac atttagattt atggtaaagt caataataat
     5221 aacggaacac attattgaag tcagtctaga aaaaataata ataatatagc gattattata
     5281 tattttttga taatttcata aattgcatat ttacttaatt gtttcttttt ctctctctgc
     5341 tatgacagca tttaacagat ccaagtcata tattcctgat aaatcaggcc gtgtttttcc
     5401 taaaaatcca atatcaaatg cgctattagc cgattggaag agtgattctt tgacgggatc
     5461 gtatgttatc tccattcttg ataatgctga atataattca tcctctggta tagtcttgcc
     5521 tgtaatcttt gagagctcaa cattgaatgc ctttatagct tcttccttat gactgttgat
     5581 ccattctgtt tcgtctacat gtgctgtcag caatttcttt atcacatctg gattgctttg
     5641 aagataatct gtcctagcaa ctatattacc tgttacaaac tgtccttttg gtggccaaag
     5701 atctctttca tctaaaaata ttctagcatt tgcttctttt accaatctct ctccccaagg
     5761 ctctggtatc catgcaccat caatatcttt ctttaacatt agagtcagta tatcggcatt
     5821 ttttgcaggt actacctcta catttcctcc gttttctttt gttttgtaac cattatctag
     5881 taggtatttt ctaagagcta catcctgagt attaccaagc tgaggagaag caaatttttt
     5941 atttgcaaaa tctttggttg attgaattcc tgaatcattt ctaaccacga aaactgctcc
     6001 tccacttgat gcaccagaaa ttattctaac atcttttcct tgtgaaacga catatgcatt
     6061 gattgcagga ttaggaccaa catatgttac atcaacttgc tttgcgaata atgcctccat
     6121 tgctgatgga cctgcgttga aaatagttgt cttgacctct atattgtcac ctaaagcttt
     6181 ctgaaatgta ccgttcccta aaccgattac cgcttgtgca tgattgatat ttggaaagta
     6241 gccaatcttc aaagttttct tcgctgtatt gccttctcct tcgctattac ctgtgtctat
     6301 agtttgggaa tatgctgacg gagtatgtat aacattaaca attgctgcaa caagaataat
     6361 tgtggcagca attgttaacg ttatacatac tcctccagca tttcccaaac tatagacaca
     6421 gataatagcg aaggagaagg caatacagca aagaaaacct tgaagattgg ctactttcca
     6481 aatatcaatc atgcacaagc ggtaatcggt ttagggaacg gtacatttca gaaagcttta
     6541 ggtgacaata tagaggtcaa gacaactatt ttcaac
//
LOCUS       DATABJ010000112         1515 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2034377, whole genome shotgun sequence.
ACCESSION   DATABJ010000112 DATABJ010000000
VERSION     DATABJ010000112.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1515)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1515)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1515
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2034377"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            77..382
                     /locus_tag="VHF44_01840"
     CDS             77..382
                     /locus_tag="VHF44_01840"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124322.1"
                     /translation="MSLKSSLALQGERDGGGEEEIAKQGAEMRVFFKHFNLMQDYIHR
                     SYTPAVAAAVIVSAISRRKRNSLVFRELCNQFPQHLGISLSSLTNSLAYSVVQWYPS"
     gene            complement(339..731)
                     /locus_tag="VHF44_01845"
     CDS             complement(339..731)
                     /locus_tag="VHF44_01845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124323.1"
                     /translation="MTAMIIMVVGVSIAALPTAEAGPINTSRSNIKSLVVQQEGEVTC
                     INQVDGQGDKKAIANPDQTQATGQGDAQATFNPDPSRSGDFTQGDTEITVDADQSTDR
                     SFEQNQTIDLDAEGPNSGTIEQQNKREN"
BASE COUNT          476 a          276 c          295 g          468 t
ORIGIN      
        1 tctttttcca ttccaagtgc aattcgaaat gaaggtattg ttctacccaa ttttgataat
       61 gagttgacga attgtgatgt cacttaaaag cagcctagca cttcagggag agagggacgg
      121 aggaggagaa gaagagattg ccaagcaagg cgctgagatg cgtgttttct ttaaacattt
      181 taacttgatg caagattaca tacatagaag ttatacacca gcggtagcag ccgcagtaat
      241 agtatcagca attagtagaa ggaagagaaa tagcttagta ttcagggagc tttgtaatca
      301 attccctcag catctaggca tctctctgtc ttctctaact aattctctcg cttattctgt
      361 tgttcaatgg tacccgagtt aggcccctca gcatcaaggt ctattgtttg attttgctca
      421 aaagagcggt cagttgattg gtctgcatca acagtaatct ctgtgtcgcc ttgagtaaag
      481 tcccctgatc tagaggggtc tggattaaaa gtagcttgtg cgtcgccctg accagttgcc
      541 tgagtttgat ctggattagc aatagctttt ttgtcaccct gaccatctac ttgatttata
      601 catgtgactt ctccctcttg ctggaccacc agggatttta tgttagaacg acttgtgtta
      661 atgggacctg cttccgctgt tggaagtgcg gcaatgctta cgccgactac cataataatc
      721 attgcagtca tcaagactgt aattttctgc gatatcctat aggtgctatt gtgataaaaa
      781 atatcgttaa ttagaagttc ttcgaatttt tatcattata tagataataa gtattttatt
      841 ttcgaattat attgataaag gaaattaaat atatgtttac tttagtagat catcttgtat
      901 atctatttta gtttcttatt aacaattaag atagaaagcg attactttta aatcataaga
      961 gctaagatac atagaatttt atatgatttc tggacatctc ggagcccttg actagaaagc
     1021 aactatatgc tccttaaatc atcaacagat cattcttgga ttccttctat cgttctctat
     1081 gattacctct tctgttgagt cataaattga atatactacc aaaccgaggg ggattataac
     1141 aacggatccc aaggatggtt atgaacagcc tagcaccatg aggggatgga tggaagaaag
     1201 aaaaaagaca caaagataag caaagacatt cttcaagcac ttcctagttc gtataattga
     1261 aaagtctaag tattttcagt aataatattt aaaaaatgaa atttcctcag acaaagggaa
     1321 ataaggatat tatattttaa aacctaataa aaaaaggaag taaacattgg acgaatgtcg
     1381 taataaccat aacctttaac cagtctgcac aatgatatca ccaaaaacaa cagccatggt
     1441 cgtagcactc gccgctatag cagtattcgg cggatttgct acagtcggga atcaagcagt
     1501 attcgcgcag gtcac
//
LOCUS       DATABJ010000113         3788 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_517835, whole genome shotgun sequence.
ACCESSION   DATABJ010000113 DATABJ010000000
VERSION     DATABJ010000113.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3788)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3788)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3788
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_517835"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1259)
                     /locus_tag="VHF44_01850"
     CDS             complement(<1..1259)
                     /locus_tag="VHF44_01850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PQQ-dependent sugar dehydrogenase"
                     /protein_id="HEX2124324.1"
                     /translation="MKYLDCVTFLSFTSSNVDKPCLVLIEELPSSTSTVDGKRHKKKL
                     LFFVLSVTILIVILIMMIIIVVFNFNLENITIGQAAHQQQQQQKNKQGPSLQIPYKSL
                     KIELVTEGLSFPTSMEFIDDNNILVLQKDNGTVHLVSNGILQKKPVLKVQVDTKGERG
                     MLGITHSRKDTVFLYFTESEHDKPLRNRVYRYHWNGVNLVNGTLILDLPAAPGPYHQG
                     GKLKIGTDNYLYAVIGDLTTILGVLQNYKDGKKPNDTSVILRVNPDNGSSVNNNPFSN
                     NKNKNDDYNNDKDNFERLLDKYYAYGIRNSFGIDFDPITGALWDTENGENGYDEINLI
                     KPGFNSGWAQVMGPIARNNNKTHNDLVNFPGSIYADPVFSWKDQIGVTDIEFLNSSKL
                     GDKYANNIFVGDINNGNLYYFEVNDKRT"
     gene            complement(1561..2211)
                     /locus_tag="VHF44_01855"
     CDS             complement(1561..2211)
                     /locus_tag="VHF44_01855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124325.1"
                     /translation="MVVKRNKSTKVFHEYLLIFTYTLASILLAHPSAPPLLGKVMIHN
                     EGYDMRRNLQKLGIPTPELISISDSVIIEEYIQQGDLYRAFSDGENSTLAFQAGVLTG
                     KLHKANYVFTDNKSQNYLVASDNSLVRTDLGFIQKKGSIFSRSIDIASFLASVIDFGN
                     SQYQAIERGFFYGYKSETKNSFPYLSIILRNILSFGFASNHAAMFQNMVRDSLKWL"
     gene            2351..3028
                     /locus_tag="VHF44_01860"
     CDS             2351..3028
                     /locus_tag="VHF44_01860"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2124326.1"
                     /translation="MLIHEGHKNARKFFNSKTASSYDSIVRLTTFGQDYIWKTHISGI
                     IDKRENILDLACGTGILSSILSKSDKKQVIGLDLAFDYLKIAKKKRRYDFFINGNAET
                     LPYKSDSFDTIISSYLAKYVDTRKLIEECWRVLKHNGIIVFHDFTYPQNAIIRSLWDA
                     YFVVLQIIGNFIGSWEIVFRDLNKVIRNTKWVEEMMYVVRQRGFTNISCDFYTAGTAA
                     IISAKKP"
     gene            3025..3726
                     /locus_tag="VHF44_01865"
     CDS             3025..3726
                     /locus_tag="VHF44_01865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124327.1"
                     /translation="MNKDTRLDEWFVPKFGPIKFRVFIGLLFLPYTGMCISFTIIGSL
                     LSPIVLWERVIAISVIYFLALGLSAHAADVLGSKTKPWGNYLNKQQLWLLTISGLTVA
                     YAIGIYYIIFYVPLLCIVAILEGFFVFAYNLELFKGFFHNNFWFSLSWGVLPVLAGFI
                     MQTNSIGFLSIIVSLIAGLESYIEIRTSRPYKELKRTGCDKNKMKKLETRLKSVSLGT
                     IIFATILVVFRLVAR"
BASE COUNT         1239 a          620 c          596 g         1333 t
ORIGIN      
        1 gttcttttgt cattaacttc aaagtaatat agattaccgt tattaatatc accaacaaaa
       61 atgttatttg catatttatc tccaagtttt gatgaattta gaaattctat gtcagtaact
      121 ccaatctgat ctttccaact aaatactgga tcagcatata tcgaccctgg aaaattgacc
      181 aaatcattgt gtgttttatt attatttcta gcaataggcc ccataacttg tgcccatcca
      241 ctgttaaagc ctggtttaat caaattaatt tcatcatagc cattttctcc attttctgta
      301 tcccacaggg ctcctgttat aggatcaaaa tctattccaa aactatttct tataccgtat
      361 gcataatact tgtccaataa tctctcaaaa ttatccttat cattattata atcatcattc
      421 ttattcttat tattagaaaa tggattatta ttgactgatg aaccattatc tggatttact
      481 cttaatatga ctgaggtgtc attaggcttc tttccgtctt tataattctg tagtacgcca
      541 agtatggtag taaggtcccc tataactgca tagaggtaat tatcagtacc gatcttcaat
      601 tttccacctt gatgataggg acctggagct gcaggcaaat ccaaaatcaa agtgccatta
      661 acaagattca ctccattcca atgatatcta tatactctat ttcttaatgg tttatcatgt
      721 tccgactcag taaaataaag aaacacggta tcttttctac tatgggtaat tccaagcatt
      781 ccacgctctc ccttagtgtc aacttgtact tttaacactg gtttcttctg tagaatacca
      841 tttgagacaa gatgtactgt tccattatcc ttttgcaaaa ccaaaatatt gttatcatct
      901 ataaattcca tgcttgtagg aaaagacaat ccttcagtca ccaattctat tttcagagat
      961 ttatatggaa tttgtaaaga tggcccttgt ttgttcttct gttgttgttg ttgttggtgt
     1021 gctgcttggc ctattgttat attctctagg ttaaagttga atactactat tataatcatc
     1081 ataatcagaa ttactattaa tatagtaacg gataaaacaa aaaaaagtag tttctttttg
     1141 tgtctctttc catcaacggt acttgttgag ctaggcaatt cttctattaa aactagacag
     1201 ggtttatcta cattactgga agtaaaggaa aggaaagtaa cgcaatcaag atatttcatt
     1261 atatatcaag aagaatctcg acgaatcttg tcccgtgtga ttgagtcttt atctgtgaac
     1321 tcatgtccaa aagatgttga attttttgtg atagagagaa tttaaatatt taaaggtata
     1381 aaaaatattt tcttatttag ttaatacgaa atatcaaaga aatcatctcg aagatacaat
     1441 acaaatcact aaacgaatca ataaagaaaa gtacggaatt aatattttct atttacttaa
     1501 gtataataat ttctcttata aaatttcttt cctaaacttt tttctcacat ctatttagat
     1561 tcatagccat tttaaagagt ctctaaccat gttttgaaac atcgcagcgt gattagaagc
     1621 aaagccgaac gaaagaatat ttcgcaatat gatagaaaga tatggaaaac tattctttgt
     1681 ctctgatttg tatccataaa aaaaacctct ttctattgcc tgatattgag agttcccaaa
     1741 atctattaca cttgcaagaa atgaagcaat atcgatactc cgtgaaaata ttgaaccttt
     1801 tttttgtatg aaccctaaat ctgttcttac aagagaattg tctgatgcca cgagataatt
     1861 ttgagactta ttatctgtaa aaacgtaatt tgccttatgc aatttcccag ttaaaactcc
     1921 tgcttggaag gctaatgttg aattctcacc atctgaaaat gctctgtaaa ggtctccttg
     1981 ttgtatatat tcttcaatga taacggaatc tgaaattgaa atcaactctg gcgtaggaat
     2041 tcctaacttt tgtaggttcc ttctcatatc ataaccctcg ttatgtatca taacttttcc
     2101 tagaagagga ggagcagagg gatgcgccag taaaatggac gcaagagtat aagtgaatat
     2161 taagagatat tcatgaaaaa cttttgtaga cttattcctt ttgacgacca ctttccgtcc
     2221 accaatatat tctatagata tatttctttg ccagttaaca aaatacaaat tattcctata
     2281 atatatggcg atcttcctgt ataagttttc aatatataat agtgtgcaat atgtaataga
     2341 aagcagaaaa ttgttaatac atgagggaca taaaaacgct agaaaattct ttaattctaa
     2401 gactgcatct agctatgact ccatcgttcg tcttactacc tttggacagg attatatttg
     2461 gaaaactcat atatcaggaa tcattgataa aagagaaaat attctcgacc ttgcttgtgg
     2521 aactggaatt ctttcttcga tactatcaaa aagtgataaa aaacaagtta taggtttgga
     2581 tttagccttt gattatttga aaattgcaaa aaagaaaaga agatacgact tctttattaa
     2641 cggtaatgca gaaacactac cttataaaag cgacagtttt gatactatta tatcgtcata
     2701 cttggccaaa tatgtggata caagaaaatt aatagaagaa tgttggcgtg tattaaagca
     2761 taatggcatc atagtttttc acgactttac ttatccacaa aatgctatta tccgaagctt
     2821 atgggatgca tattttgtag ttcttcaaat aattggtaac tttataggtt cttgggaaat
     2881 tgtatttaga gacctgaata aagttataag aaatactaaa tgggtagaag aaatgatgta
     2941 tgttgtacga cagagaggat tcacgaatat ttcttgcgat ttttatactg caggaaccgc
     3001 tgcaattatt tcagcgaaaa aaccttgaat aaagatactc gtttggatga gtggtttgtg
     3061 cctaaattcg ggcctataaa gtttcgtgtt tttataggat tgctatttct tccatataca
     3121 ggcatgtgca tttcctttac aataatcggt tcgctgctct cacctatcgt attgtgggaa
     3181 agagttattg ctatatctgt tatttatttt ctagcactag gactgtcagc acatgcagcc
     3241 gacgtcttag gctctaaaac taagccatgg gggaattacc tcaacaaaca acaattatgg
     3301 ctattaacaa tttcaggtct aactgttgca tatgccattg gtatttatta tataattttt
     3361 tacgtaccac tactttgcat agttgctata ctagagggat tttttgtttt tgcatataat
     3421 ttggaactat tcaaaggatt ttttcataat aacttctggt tttcattgtc ttggggagtg
     3481 ttaccagtac tggctggatt tattatgcaa actaactcca ttggattctt atcaataatt
     3541 gtatctttaa tcgcaggtct cgaaagttac atcgaaatta gaacatctag accatataaa
     3601 gaattgaaaa gaactggatg tgataaaaat aaaatgaaaa aactcgaaac tagacttaaa
     3661 tcagttagtt taggaacaat aatttttgct actatcttgg ttgtttttag attggtcgcc
     3721 agatagtttt taataatgca tattattgta aaaataattg gtcgttgttt cagtaactat
     3781 aaaagatt
//
LOCUS       DATABJ010000114         2518 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_731836, whole genome shotgun sequence.
ACCESSION   DATABJ010000114 DATABJ010000000
VERSION     DATABJ010000114.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2518)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2518)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2518
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_731836"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(829..1377)
                     /locus_tag="VHF44_01870"
     CDS             complement(829..1377)
                     /locus_tag="VHF44_01870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124328.1"
                     /translation="MHGPLWLENPTISVILLGIAFCLLYKSLTTEKRHRKHQHSNHYN
                     VERELFGHKIVDTNKGWLLFTSFVGLAALGTHYLAENTFHVYDVTPVDRFTHGLSGMA
                     VTAIILNLYLTKKREFYYIVSIGASWIAFILWEVFELIYIAYSGPSGFIQSDAWDIVI
                     DLWIDSLGALSICFLYDEFTEK"
     gene            complement(1737..1967)
                     /locus_tag="VHF44_01875"
     CDS             complement(1737..1967)
                     /locus_tag="VHF44_01875"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124329.1"
                     /translation="MNKGYLSRTLIVVGSILIIAGLVFTAQSKSIVGPQSSFMYSNPE
                     WTVNGFLISGVGLAILASGIILWIFNKINVLK"
     gene            2033..2464
                     /locus_tag="VHF44_01880"
     CDS             2033..2464
                     /locus_tag="VHF44_01880"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2124330.1"
                     /translation="MKVYKISAITLLIKNMERSCRFYSKMPGFRLAYGGLSDDSFTTY
                     EVGEFTQTYLNLELYINNNNNQQDKIKTRHFGRIIFHSEDIDRLYSYMKNNESISKMI
                     CFENEPTDAPWGERYFHIREPDGYQLSFAMPIKKKYQGHEQ"
BASE COUNT          852 a          442 c          371 g          853 t
ORIGIN      
        1 gcattagatg ataatcacgc cctttctctt gagcggataa atgcttacca gcctcctcca
       61 ccttgatgta taatgatatt attaatgctt accaatgaaa atgacatgtt tatggtagtc
      121 aaattattga ttgatggata tgtcccttta ttttatagtc agagattctg ctgctttatc
      181 atttttataa tatatgtcta tttttgctaa gataatgttg gtagaataaa tttgagtttt
      241 cgatgagcaa ttcattctaa cgaatatcta aaatacatat acatcatttt gattatactc
      301 ttttatacca actactacaa aatctcatta ttaaaataaa tattttaata ttcgaagata
      361 tttttatata tctcattgat tcataacttg aatcaactat tttaagtact ttttctgctt
      421 attagtaaca ttttcctttg tgacactgat tgacatagtt ctacgaacta ttaatgtatt
      481 atacgttgat attatacttc acataaaatt agctgtcatg taatgattgt gtattttaaa
      541 ttagatgtct aacaagtttt tactgctacg cactaaagtc cacagctttt tataatttgc
      601 ctaattgagc cttttttttc tctatgaaaa gtaacaacca ctgtcaaaga tcgagttcta
      661 tcttctttat gtatttgata gttcttattt aataatactt ctttatccct cctttctttt
      721 caacataaat agatgaaaaa tctatcccaa gctctagtca tattgttaag taaatagagc
      781 caacaattat aataacggtc cacaggcgtt gagagtccgc cgtttcaact atttttcagt
      841 aaattcatcg tagaggaaac atattgataa agcacccaaa gaatctatcc ataaatctat
      901 gacaatgtcc cacgcatcgg attgaataaa tccacttggc ccactatatg ctatgtatat
      961 caattcaaac acttcccaga gaataaatgc aatccacgac gcgcctatgc tgacgatata
     1021 gtagaattct ctcttttttg tcaagtatag attaagaata attgcagtca ctgccatccc
     1081 agaaagtcca tgtgtaaagc gatcaacagg agttacgtca tacacatgaa atgtgttttc
     1141 tgccagatag tgagtcccaa gtgctgctaa tcctacaaaa gatgtgaata ataaccaccc
     1201 tttgtttgta tccacgattt tgtgtccaaa taattctctt tctacattgt agtggttact
     1261 atgttgatgt ttgcgatggc gcttctctgt agtcagggat ttataaagca gacaaaatgc
     1321 aataccaagt agtatcactg aaattgtagg attttcgagc cataagggac catgcattac
     1381 tatacgtgca tgttcgctgg ttaaagaggt aatttaatct attaatgagc aaaattactt
     1441 gatgctttct tcatcgaaaa atgttctcct acgtaagcgc agaacttctc agataccatc
     1501 tttatacata atggtatcta cttgtctgat ttactccttc aaaagctgcc tataatactc
     1561 attgcttcta taattcaacg agtatcttct cttatacaag catatgcatc atcaagtact
     1621 cagccaaagt aatcagccat caatattttc agactttcgg tataattatc ttttgacaag
     1681 aaatggagca aaagaatcat ttgaaatgat agcagtacag caatataaaa attaagttat
     1741 ttcaatacat taatcttatt aaaaatccaa agtataattc cagaagccaa gatagctaaa
     1801 cctactccag aaatcaaaaa accgttgaca gtccattcgg gattgctata cataaaggaa
     1861 gattgtggac ctacaatcga tttactttgt gctgtaaata ctaatccggc tataatcagt
     1921 atagacccaa caacaattaa tgttctacta agatatccct tattcatata tcgttatctc
     1981 tgttattata tggtggagta tttgtagaat aataacttag atataatagg taatgaaagt
     2041 atacaaaata tctgcaataa cattattaat taaaaacatg gagagatctt gcagatttta
     2101 ttctaaaatg ccaggttttc ggttagcata cggtggtctg tctgatgatt cctttaccac
     2161 atatgaggtc ggtgaattta cacagacata tctcaaccta gaattatata ttaataacaa
     2221 taataatcaa caggataaaa tcaaaacaag acattttggc agaataatct tccatagtga
     2281 agacatagat agactatatt cgtatatgaa gaataacgaa agcatctcaa agatgatatg
     2341 ttttgaaaat gaacctacag atgctccatg gggtgaaagg tacttccata tacgagagcc
     2401 agatggttat cagctatcat ttgcaatgcc aataaagaaa aagtatcaag gccatgaaca
     2461 gtaactcttt agagtaacac ctacgctaac cttgactttt tagcatattt ttattctt
//
LOCUS       DATABJ010000115         2689 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_520771, whole genome shotgun sequence.
ACCESSION   DATABJ010000115 DATABJ010000000
VERSION     DATABJ010000115.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2689)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2689)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2689
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_520771"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..329
                     /locus_tag="VHF44_01885"
     CDS             <1..329
                     /locus_tag="VHF44_01885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124331.1"
                     /translation="PTLSIKYVVCYLEHAYIMGCPFTSCFSGFSSHYNLANGTHESDP
                     SGPGGGQSMSSPCQIIKGLSSLRDFGNTIDNEDTEEEFAAKSVDRHIILMTTAIYKIF
                     FNKRLN"
     gene            481..897
                     /locus_tag="VHF44_01890"
     CDS             481..897
                     /locus_tag="VHF44_01890"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HEX2124332.1"
                     /translation="MNQIYKISILTALAFGIISLFVDSPVVFAQNSLTISITPGSSAP
                     NNEVFWSPDDPTIKQASQPNEAKIKVGTSVIWRNDDAALHNGISTNSTSGVTFDTGYL
                     SKGKTGPAQPVVFDKPGTTEYYCSLHPFMIGKITVE"
     gene            1428..2453
                     /locus_tag="VHF44_01895"
     CDS             1428..2453
                     /locus_tag="VHF44_01895"
                     /inference="COORDINATES: protein motif:HMM:TIGR01297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008324 - monoatomic cation transmembrane
                     transporter activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cation diffusion facilitator family transporter"
                     /protein_id="HEX2124333.1"
                     /translation="MDDTGDKNTNASNESGSQVVKNSSPNLINEGILAGQKIARISVV
                     TLIGIGIVELVTGQVSGSVVATADGIDSLSDAMISFIVLLGLRIAHRPADRKFHFGYH
                     KVESLAAMMAAIGMIIIGCVIVYHSYEALIHPREIKQPIFTMIVLAAAGAISLHRAFQ
                     MRIIANKYDLLSLKTDAKNSIKDGSASVIGFFSVLIASQFGFLQMDAIGGMIIAGYIF
                     SVSYISLKQSSLILVDAWQNPKVTELVKRIVEERFKHENIRVRSVLLRSSGMVAQAEV
                     HMEIDGNKPLTDVELLSIEIEMAIRSKIPTMERVSVIPHSFTLAKSESKRWSGIFSNK
                     NKVVGSK"
BASE COUNT          909 a          474 c          449 g          857 t
ORIGIN      
        1 tacctacgct atccatcaaa tatgtcgttt gttatctaga gcacgcgtat ataatggggt
       61 gtcccttcac atcatgtttc agtggatttt cttcccacta taatttagcc aatggtacgc
      121 atgaatccga tccttcagga cctggaggtg gtcaatccat gtcatccccc tgtcagatca
      181 tcaaaggtct ctccagcctc cgtgattttg gcaatactat tgataatgag gatacagaag
      241 aagaatttgc tgcaaaaagc gttgaccgtc atatcattct aatgacaaca gcaatctata
      301 agatcttttt caataagaga ttaaattgaa ttatttaaag attttatcac aaatacaaaa
      361 gttttattta taaatgacat actgcagaca aaatagtaat atcgtgcaag gcatttaatt
      421 ctacatactt aacaaaataa aaattaaagt attaatatct cttattgtaa ctagaaacga
      481 atgaatcaaa tatacaagat aagcatccta acagcactag catttggtat aatctctcta
      541 tttgttgact ctccagtagt ctttgcccag aatagcctca ctatctcaat aaccccggga
      601 tcttcagctc ctaacaacga agtgttctgg agtcctgacg atccaacaat aaaacaagct
      661 tcacagccta acgaagcaaa aataaaagta ggtacatctg tcatatggag aaacgatgat
      721 gcagctttac acaatggaat ttcgacaaat tcaacttccg gggtaacatt tgacactggc
      781 tatttgagca aaggaaagac tggtcccgca caaccagtcg tatttgacaa acctgggact
      841 actgagtact attgttcatt acatcccttc atgattggaa agataacagt agagtaaagt
      901 aagacaataa atcaagcttt tccatacctt tctttgtatt attactttaa tcctttgcaa
      961 acttaacact catattatca tatatgatgt atgagaatta acaaagaaat acttggcatc
     1021 ttcatttatg atcttctttt ctattaatac aagatataat ttacaagtaa ataaatacga
     1081 taaaggaagc taccatatcc cgagtttcga ttgaaagact atgtacgcta ttgccatatg
     1141 catattagta tactctttat cgtctgtgaa taacttgtct gacaatagca cctttgcttg
     1201 tcatgagagc aagtgttcct ttgactgttt cagttgatta tgttcggttt cctctagatc
     1261 ttacaatatg tcaattttag tgaagtacag gctaatataa caaataaaaa tttgaaatta
     1321 ataatgctat tatagaaatc ttccataaat atacgttaga tcgtatgtaa tctgaaaata
     1381 gaatgagttt aaatatcata attgttaaac ttcattaacg ctataatatg gatgatacag
     1441 gcgacaagaa tactaacgct tcgaatgaat ctggttcaca ggttgttaaa aactcttctc
     1501 ctaatctgat caatgaagga attttagcag gtcaaaagat tgcaaggatc tctgttgtaa
     1561 ctttaatcgg cattggaatt gtagagcttg ttacagggca agtgagtggt agtgtagttg
     1621 ccactgcaga cggcatagat tcgctatccg atgccatgat ttcttttatt gtattattag
     1681 gtttacgtat tgctcatcgt cctgcagata gaaaatttca ttttggctac cacaaggttg
     1741 aaagtcttgc agcaatgatg gctgcgattg gaatgattat cattggatgc gttatagttt
     1801 accactctta tgaagcatta atacatccac gagaaatcaa gcagcctatt tttaccatga
     1861 ttgttttagc agcggctggt gctatatctt tacatagagc atttcaaatg cgaattattg
     1921 caaataagta tgacctgctc tcattaaaaa ctgatgccaa gaattcaata aaagatggtt
     1981 cagcttcagt gattggtttt tttagtgtat taattgcaag ccaatttgga tttttacaaa
     2041 tggacgctat tgggggtatg ataatcgcag gatatatctt ctctgtgtcc tacatttcac
     2101 tcaaacaatc atcattaatt cttgtagatg cttggcagaa cccaaaggtt accgaacttg
     2161 tcaaaagaat tgtcgaagaa agatttaaac atgaaaacat tagagtcaga tcagtacttt
     2221 tgcgttcatc aggaatggtt gctcaagcag aagttcatat ggaaatcgat ggtaacaaac
     2281 cattaacaga cgtagaatta ttatcaatag aaatagaaat ggcaattcgt tccaaaatac
     2341 ctacgatgga aagagtctca gttattcctc attcttttac attagcaaaa tccgaatcaa
     2401 aaagatggag cggaatattt agcaacaaaa ataaggtagt aggttcgaaa tagaattaga
     2461 caagatgaaa aaactcttga tcttctccat atgctatctc ttttaataga ttaaatttaa
     2521 gatgtaatag catagatata acaaagtcaa agatatcttg ttattcgaca gcttatcaac
     2581 cattatacac ttgatgcaat gaatttgcac ctttatttaa gatactatgc aacattcctg
     2641 cattcctgaa tcaaatagat tattacacat atcctttatc atcatctgt
//
LOCUS       DATABJ010000116         2070 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1388545, whole genome shotgun sequence.
ACCESSION   DATABJ010000116 DATABJ010000000
VERSION     DATABJ010000116.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2070)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2070)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2070
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1388545"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..262)
                     /locus_tag="VHF44_01900"
     CDS             complement(<1..262)
                     /locus_tag="VHF44_01900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015021032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX2124334.1"
                     /translation="MPKKLFVIGVGPGSPKYLTDIAKDTIRQSRYIIGYKYTLTTIES
                     IIDRNRQEVYVVSMKNQDNVYQQIHNRMKEGDYCTIPFTGDVN"
     gene            691..1536
                     /locus_tag="VHF44_01905"
     CDS             691..1536
                     /locus_tag="VHF44_01905"
                     /inference="COORDINATES: protein motif:HMM:NF037920.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CdvA-like protein"
                     /protein_id="HEX2124335.1"
                     /translation="MSELKLEFVGKQVKDMYGTFIGKVIGIVTDIDGSIESVGVDCGS
                     AGLKHLAYEQLLVQGDYVIYIPRWRLDAQKLLRQKNLTLMRIKALKDIVAENDSMKDD
                     AELIYIKYEKRLNDLEKDEKYVHEKLHERLNELDKESKDVKAVLFDAKLQHRSNEITE
                     DMYQQISIHTNELMEHINLEKSEINNVKTRLTQQTLENNAISTVSDAESTVREMPATE
                     TALQQQQQQEGSVSRQSIAPPQIVGKNVTSNTEEKPVETHADDVDKETSWLNQVIPNN
                     SEIST"
     gene            complement(1618..1881)
                     /locus_tag="VHF44_01910"
     CDS             complement(1618..1881)
                     /locus_tag="VHF44_01910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX2124336.1"
                     /translation="MKYRSRTEIVAMILEAANGGATKTKIMYKAFLSYAQLREYLSVL
                     IENSLLEYLEGSQTYKTTEKGLNFLKMHNEIGELLQTSPRQEK"
BASE COUNT          735 a          339 c          344 g          652 t
ORIGIN      
        1 aattgacgtc gcctgtaaat ggtatcgtac aataatcacc ttccttcatt ctattatgta
       61 tctgctgata gacattgtct tgattcttca tgctaaccac ataaacctct tgtctatttc
      121 tatcgattat gctctctata gtagtcagag tatacttata tcctataata tagcgtgatt
      181 gacgaatggt atctttagct atatctgtca aatattttgg ggagcctgga ccaacaccaa
      241 taacaaatag cttctttggc attatattat agatataagc aataaagcag actttaaaac
      301 cttagagaga atttgttgct tgtgaaatgt ttcgcaatat gtattcacag ttgcttttac
      361 tctggcataa taataaccat caagacccta gatgattact ttttagtcat gcaatataca
      421 tacacacgtg tatcgtgatc catttcagag tggaatcttt tccacaaagt aaaaataatt
      481 acagattcaa ttttgccata aatatccaaa ctcattttgt taaataatcc ctagcccaat
      541 aatattacgc aacattaact cgatagaaaa gaaaagttgt ttttattgtt gtacctttat
      601 cactggtgtt ctatcgggca aaatcgtctt accaatttac acaataattt tgacaatgtt
      661 gccattatat ctatcttcca aaggctttac atgagcgaac taaagctcga atttgtcggc
      721 aaacaagtca aggatatgta tggtactttt ataggaaaag taatcggtat agtaacagat
      781 attgatggtt caattgaatc tgttggtgta gattgcggtt ctgctggttt aaaacattta
      841 gcatatgaac aactgctagt tcaaggagat tatgtaatct acattccaag atggcgattg
      901 gatgcacaaa aactactgcg acagaaaaat cttactctaa tgaggataaa ggcacttaag
      961 gatatagttg cagaaaacga ttcaatgaaa gatgacgctg aattaattta cataaaatat
     1021 gaaaaacgac tgaatgacct tgaaaaggat gaaaaatatg ttcatgagaa attgcatgaa
     1081 aggttaaacg aattggacaa agaaagcaaa gatgtaaaag cagtattgtt tgatgcaaag
     1141 ctacagcata gaagtaatga aataacagag gatatgtatc aacaaatcag catacataca
     1201 aatgaattga tggaacacat taaccttgaa aagtctgaga tcaataatgt caagacaaga
     1261 cttacgcagc aaaccttaga aaataacgcg atatcgactg tatcagatgc tgaatcaact
     1321 gtccgggaaa tgcctgctac tgaaactgct ttacaacaac aacaacaaca agaaggttct
     1381 gtctctagac aaagtattgc tccgccacag atcgtaggaa agaatgttac aagcaatact
     1441 gaagaaaagc cagttgaaac acacgccgac gacgttgata aggaaacgag ttggttaaat
     1501 caagtaattc ctaataattc tgaaattagt acatagagaa aatattatat gagttaagtg
     1561 ttaaaaaaag aaaaatgtta aaagtagaga aaatataaga aaaatgattt atttagatca
     1621 tttttcctgt cttggtgatg tctgtagaag ctcgccaatt tcgttgtgca tttttagaaa
     1681 gttcaatcct ttttctgtgg tcttgtaagt ctgagaacct tccaagtact ctaataaact
     1741 gttctcaatg agcacagaaa gatattccct taactgtgca tagctcagaa atgctttgta
     1801 cataattttt gtctttgtcg ctccaccatt tgctgcttct aagatcattg ctactatttc
     1861 tgttctgctt ctgtatttca caacaaacta cactgaattt ctttatttta atatattgac
     1921 acattataac agaataatgt tataggttta taatacattt agacctttga taattagtac
     1981 taactagtaa tcggatccat taagatgtat ctaataaatg ttgatactat aattccatac
     2041 taaggcgaag tttaatatga aaattttcac
//
LOCUS       DATABJ010000117         1715 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1830390, whole genome shotgun sequence.
ACCESSION   DATABJ010000117 DATABJ010000000
VERSION     DATABJ010000117.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1715)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1715)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1715
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1830390"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            175..345
                     /locus_tag="VHF44_01915"
     CDS             175..345
                     /locus_tag="VHF44_01915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124337.1"
                     /translation="MAKIITMIRIINTPYSRGLRLVITIHSELAFTRYKYGSNDPTTN
                     NRRKDIFSKGSD"
     gene            737..1105
                     /locus_tag="VHF44_01920"
     CDS             737..1105
                     /locus_tag="VHF44_01920"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HEX2124338.1"
                     /translation="MSLLAGKKYINLETYRKNGQGVRTPVWFVERNNGDGSVLYVRTS
                     EDTGKYKRVRNNPSVQIAPCDMRGSVKGNWVKGEARIAGEEEKLRVFKMLEKKYGIMY
                     KMTRMFLSGKNYVVIAIHIT"
     gene            complement(1309..1545)
                     /locus_tag="VHF44_01925"
     CDS             complement(1309..1545)
                     /locus_tag="VHF44_01925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124339.1"
                     /translation="MAPKTEEGNVKGFSCYHGGNYNTFKENQKKEFIQKGKNLLEVTE
                     SSTHPEAYICMNETAADSFEMLATTINYRNLGFK"
BASE COUNT          559 a          291 c          347 g          518 t
ORIGIN      
        1 aaacttaata gttccttatg ctaatgatgc tgttatggca tagttatcat ttttcttatt
       61 gataagatgc atctcagtcc caagcacgaa ttgcatagat aaagaatttc cttatgaata
      121 aaatggaata acggttatcg cagccgacat tattattttc caatcctcat aataatggca
      181 aagattatca ctatgatacg tatcataaat acaccctatt ctaggggtct taggctagtt
      241 ataaccatcc attcagagct tgctttcact agatacaaat atggtagtaa cgaccctaca
      301 acaaataacc gacgaaagga catcttttct aaaggatcag attaaccaag ataacaaacc
      361 tgaagtgaac aagacctttc agctgcagat agatactatt agatctgtga tgatattgag
      421 aaagtcgaat ccgtcatttt gcaaaagaag gcccaactaa atagtgaaga tattcatgaa
      481 tctgagaggt ggcttgcgga acttgacgac ttggaatggc tgcattggca aatagcgaga
      541 tacacttgaa gtcaaataaa aaccagatct attatcattt gctattgtag tatatgcggt
      601 aaaaaaatta aagtccgcat tattggaaag ttgaaaatga gcatgagtga tttatcaagg
      661 ttaaaacttc ggctaaaatg cgaatttatt cttatattga ggactgatca aataaggaca
      721 gagcaggaga gaaaaattgt cgcttcttgc tggtaaaaaa tacatcaacc tagaaaccta
      781 cagaaagaat ggacagggag ttagaacacc tgtatggttt gtagaaagga ataatggcga
      841 cggtagtgta ttatacgtgc gaacatctga ggacacaggc aagtacaaac gtgtacgaaa
      901 taatccttcg gttcaaatag ctccatgcga tatgcgcggt agtgtgaaag gcaattgggt
      961 taaaggagaa gctaggatag ctggcgaaga ggagaagctc agagtgttca agatgttgga
     1021 gaaaaagtat ggtataatgt acaagatgac acgaatgttt ctttctggca aaaattatgt
     1081 ggtaattgcg atacacatca cataaaactg aagataatat agagagaaaa aaggtgcttg
     1141 ggataggata aaggtttatg agttttattt tttataggat atagaatagt agagaaactg
     1201 cagagattct tccttgatgc gcttatttga gcaacaaatg ttatagatcg gtcttttttt
     1261 cttgccttca aggattttct atggggccat cgtgatttgg ataaaaattc atttgaatcc
     1321 cagatttctg tagtttattg ttgttgcaag catctcaaaa gaatctgcgg cagtctcatt
     1381 catgcatata tatgcttcag gatgtgtact gctttctgta acttcaagca gattcttccc
     1441 cttttgaata aactctttct tctggttttc tttaaaagta ttgtagtttc ctccatgata
     1501 gcaactaaag cctttgacgt tgccctcttc tgtctttggt gccaagaatg cctcgtaatc
     1561 tattaattct gtagctctgc catctccacc acataagaag aaaaaagccc atatctatta
     1621 tggcagcggc ttcgcctctg ctttctcttt ttgcacgctc ggaaagtgat gccaccagtt
     1681 tttcatgcca ttaacatcga gatagtatgt tctaa
//
LOCUS       DATABJ010000118         2067 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1611062, whole genome shotgun sequence.
ACCESSION   DATABJ010000118 DATABJ010000000
VERSION     DATABJ010000118.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1611062"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..747
                     /gene="npdG"
                     /locus_tag="VHF44_01930"
     CDS             73..747
                     /gene="npdG"
                     /locus_tag="VHF44_01930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016651 - oxidoreductase activity, acting
                     on NAD(P)H [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent F420 reductase"
                     /protein_id="HEX2124340.1"
                     /translation="MRVGIIGGTGGMGKGFALRWCYSHDIIVGSRDAQRAKEAVQSYI
                     EVAREAYGNSMTGSISGDDNFSLARNSDILILSIPYESIDDTCDRLVKEVRNECVIVS
                     PIVPMTRTDAGFTYIPIEKGKKFAAEIVADKLPPRSRVVSAFHTISEVKLINVKRSLD
                     ADTFLCGDDQSTIATLNTLVSEINGLRPIYLGPLSMTYQAEILTPMLLNAAKRNKMKH
                     PSIRLV"
     gene            754..1059
                     /locus_tag="VHF44_01935"
     CDS             754..1059
                     /locus_tag="VHF44_01935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124341.1"
                     /translation="MRYIEGNGEKSRRGRNWMSAMGVLFIVMAIIIALRNLYFITTEF
                     SFEFYLDNYTNAQLTNEKFVIAMLVAGGILLYWGYFKKKEDYGPPDEHERRRFNYGK"
     gene            1120..1866
                     /locus_tag="VHF44_01940"
     CDS             1120..1866
                     /locus_tag="VHF44_01940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HEX2124342.1"
                     /translation="MIRLGLTNRLSTVIKQKVNQLLDRYEDPRQALDYSHVKQTEMLN
                     KLRRDIAEVVTSKKRLEMQKAKLWDNIRTLDEQARRSIEVDREDLAKLALERKNANLL
                     QVQGLEKQIAEMQNEQEKLEQTEKRLSAKVEEFKSKKEVIKAQYSAAEAQVRIKESVS
                     GISEEMTDVGLSMNRAEDKTEKMKAKAQALDEMINSGVLTDYTSNKDDIEKELEKITV
                     DGSVEEELAKLKAEKARKKKQVIEEQEIQQ"
     gene            1863..>2067
                     /locus_tag="VHF44_01945"
     CDS             1863..>2067
                     /locus_tag="VHF44_01945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124343.1"
                     /translation="MNGKKRIKSVKSSRNITGKDQKPLKRKFLKTSAIKKKSPKLKKK
                     ETIKTKRGRSSSIKSLGQQRKTRP"
BASE COUNT          787 a          315 c          425 g          540 t
ORIGIN      
        1 aaaataaaat acattattca gatcgtttga taagattaat atccattatt cacgaaagga
       61 attgaacagt atatgagagt tggaataatt ggtggtactg gcggcatggg aaaaggtttt
      121 gcgcttagat ggtgttatag ccatgatatt attgtaggtt cccgagatgc acaaagggca
      181 aaagaggctg ttcaaagtta catagaagtt gcccgtgaag catatggtaa cagtatgact
      241 ggaagcattt ccggagatga taatttttct ttagctagaa attctgatat cttaatttta
      301 tctattccat acgaatctat cgatgataca tgtgatagac ttgttaagga agttagaaat
      361 gaatgtgtta ttgtctcacc aatcgttccg atgacaagaa cagatgctgg gttcacatac
      421 atccctattg aaaaaggaaa aaaatttgcc gcagagatcg tagcagacaa gttaccgcct
      481 agatccagag ttgtttcagc atttcataca atctcggagg ttaagctgat aaatgtaaaa
      541 agaagtctag atgcagatac ctttctatgc ggagatgatc agagcaccat agcgacatta
      601 aatactttag tttctgagat taatggactc cgtcctatat atctaggtcc gttgtctatg
      661 acatatcaag cagaaattct aacccccatg ctactaaatg cagctaaaag aaataagatg
      721 aagcatccta gtattagatt agtgtaaaca attatgagat acatagaagg aaatggagag
      781 aaaagccgtc gcggaagaaa ctggatgtct gctatgggtg tcctcttcat agtcatggct
      841 attatcatcg ctctaagaaa tctctatttt atcacaacag aattctcttt tgaattctac
      901 cttgataatt acaccaatgc acaacttaca aatgaaaaat ttgtcattgc tatgttagtt
      961 gctggtggaa ttttactata ctggggctat tttaaaaaga aagaagatta tgggccgcct
     1021 gatgaacatg agcgacgcag atttaactat ggaaaatagt tatctaatac gagatcagtg
     1081 atttcagtat atttaataat taattaatac cattattgta tgattagatt gggtttaaca
     1141 aatcgtcttt caacagtaat taagcaaaaa gtgaaccaac ttctagatag gtatgaagat
     1201 ccacggcaag ctcttgatta ttctcatgtc aaacaaactg aaatgttgaa caagttacgt
     1261 agagatattg ctgaagtggt aacttctaaa aaacgattag aaatgcagaa ggcaaaacta
     1321 tgggataata ttcgtacact tgatgagcaa gcccgtcgtt caattgaagt agatagagaa
     1381 gatttggcaa aattggcatt ggagcgcaag aatgcgaatt tgcttcaagt acaaggtttg
     1441 gaaaaacaaa ttgcagaaat gcaaaatgaa caggaaaaac tcgaacagac tgaaaaacgc
     1501 ctatctgcca aagttgaaga attcaagtca aagaaagagg tcatcaaggc gcaatattcc
     1561 gcagcagaag ctcaagtacg tatcaaagaa agtgtttcag gaatctctga ggaaatgaca
     1621 gatgttggtt tatcaatgaa tagagcagag gataagactg aaaaaatgaa agcaaaggct
     1681 caagctttag acgaaatgat aaattcgggg gttcttacag attatacatc aaataaagat
     1741 gatatcgaaa aagaactaga aaaaattaca gtagacggtt cagtagaaga agaattagca
     1801 aagttaaagg ctgagaaggc acgtaaaaag aagcaggtaa tagaggagca agaaatacaa
     1861 caatgaatgg caaaaaacgc ataaaaagcg tcaaatcctc aaggaatata acaggcaagg
     1921 atcaaaagcc attgaaaaga aagtttctta agacatctgc tataaagaag aaaagtccta
     1981 aattaaagaa aaaagaaaca ataaagacaa agagaggcag gtcttcttca ataaaatcac
     2041 taggtcagca gcgaaaaaca cgtccaa
//
LOCUS       DATABJ010000119         2296 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_960539, whole genome shotgun sequence.
ACCESSION   DATABJ010000119 DATABJ010000000
VERSION     DATABJ010000119.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2296)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2296)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2296
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_960539"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..154
                     /locus_tag="VHF44_01950"
     CDS             <1..154
                     /locus_tag="VHF44_01950"
                     /inference="COORDINATES: protein motif:HMM:NF013424.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="undecaprenyl diphosphate synthase family
                     protein"
                     /protein_id="HEX2124344.1"
                     /translation="SGEKRLSGFLIWQSAYSELVFMDVFWPEFRKIDLMRAIRTYQRR
                     IRRYGR"
     gene            230..415
                     /locus_tag="VHF44_01955"
     CDS             230..415
                     /locus_tag="VHF44_01955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124345.1"
                     /translation="MPVHGDYDEDIHKWYCSYWLTMEEWEDIHDYAPSPFLDSVTDKN
                     NDFEGSNKEDADEYRND"
     gene            463..894
                     /locus_tag="VHF44_01960"
     CDS             463..894
                     /locus_tag="VHF44_01960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEX2124346.1"
                     /translation="MIREERSAGAVLFSLDSKAGEIEYLLLNYAAGHWDFPKGNIENG
                     EDEIQTARREIQEETGIYDVEFFKGFRNKIEYHYRHNQRLIQKEVIFLLAKTSIRDVT
                     LSYEHNAYTWLAYEKALALLTYKNAKNVLIEAKLFLEQNSP"
     gene            complement(897..1691)
                     /locus_tag="VHF44_01965"
     CDS             complement(897..1691)
                     /locus_tag="VHF44_01965"
                     /inference="COORDINATES: protein motif:HMM:NF012441.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine 5'-phosphate decarboxylase"
                     /protein_id="HEX2124347.1"
                     /translation="MLIRWWELTNKSNSYRNRIINSSRKKKSRIILALDVTPRKGLKR
                     FVKSTIRLLEHHICAIKINYHLILPLSLSEITEINRLAHRYGLVSIADLKLNDIKSTN
                     KIAIEYLSLMEFDAVIVNPFMGKDELIFASKQAHKINFGIIALVYMSHPGAEESFGIN
                     VVSANEQISGSSQLTQMYKIFFDYASQSHVDGIIIGATQDKILNELSGHKELPVYSPG
                     LGKQGGDIAKAANNGTNFFIIGRSIIESKDPLGVIQKLQRDISNNI"
     gene            complement(1660..>2296)
                     /locus_tag="VHF44_01970"
     CDS             complement(1660..>2296)
                     /locus_tag="VHF44_01970"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124348.1"
                     /translation="APLPAFSLMMNNEYILAVQTDFIDGRPVIYFVNSPQQRDGQYLA
                     YRIIGGIEEVMMVDFVANPSFVYSPIINIEKFPSALTKIARVQKKSGYLAIRLKDLSS
                     LAKVAAYKTIYDEPPLPLFLFKERTGGQTIVNQSNARLVIGATMSLSESDTISYFYYV
                     ILDEEPKDPFLRYSSQRIEQPSFSGRLDEHGYIYLKLIRLAHTHPLVGINE"
BASE COUNT          763 a          366 c          424 g          743 t
ORIGIN      
        1 gtcgggagaa aagcgtctta gtgggtttct aatatggcaa agtgcatata gtgaattggt
       61 atttatggac gtattttggc cagaatttcg caaaattgat cttatgcgag cgattaggac
      121 ttatcaacgc agaataaggc gatatggaag atgattttct ctaaatgtta taactgatat
      181 tatttggcat catttattag ttgcaaaata taaaaaatga cattagaata tgcccgttca
      241 tggcgattat gatgaagata tacacaagtg gtattgtagt tactggttaa caatggaaga
      301 atgggaagat attcatgatt atgcaccgtc gccttttttg gactcagtta ctgataaaaa
      361 taatgacttt gaaggatcaa ataaggaaga tgcagatgaa tatagaaatg actaatgatc
      421 tgataagtat aaaatgttag tcaaactttg aatgtgaaag aaatgatacg agaagaacgc
      481 tccgctggcg cagtactatt ttccttagat agtaaagcag gcgaaataga gtatttatta
      541 ttaaattatg ctgctggaca ttgggatttt ccaaagggaa atatagaaaa cggagaggat
      601 gaaatacaga cagcacgtcg agaaatacaa gaagagactg gaatatacga cgtggaattc
      661 tttaaaggtt ttagaaacaa gatagaatat cactataggc ataatcaaag attaattcaa
      721 aaagaagtta tcttcttatt agctaaaaca agcataaggg atgttacatt gtcgtatgaa
      781 cataatgctt atacgtggct agcatatgag aaggctttgg ctttactcac ttataaaaat
      841 gcgaaaaatg ttcttataga ggctaaatta tttttagaac agaattctcc ataattctat
      901 atgttattcg aaatgtctcg ctgtagcttc tgaataacac ctaacggatc tttggattcg
      961 attatggagc ggcctataat aaaaaaattt gtgccattat tagcagcctt tgctatgtca
     1021 ccaccctgtt tacctaaccc tggggaataa actggtaatt ccttgtgacc agataattca
     1081 tttaagattt tgtcctgcgt tgcgccgatt ataataccgt cgacatggga ttgggacgca
     1141 taatcaaaaa atatcttgta catctgcgtt agttggctac tcccagaaat ctgttcgttt
     1201 gcagaaacaa cattgatacc gaaactctct tccgctcccg gatgactcat atagactaga
     1261 gcaataattc caaagttaat tttatgggcc tgttttgatg caaagatcaa ttcatctttt
     1321 cccataaatg gatttactat tacagcatca aattccatca gtgatagata ctctatagcg
     1381 attttattgg tgcttttgat atcatttaat tttaaatctg caatagatac taaaccataa
     1441 cggtgggcta gtctatttat ctctgttatt tcagaaagag aaagtggcaa tataagatga
     1501 taatttattt tgattgcaca aatatgatgc tctaaaagtc tgattgtaga tttaacaaat
     1561 ctttttagac cttttcttgg agtcacatca agagctaaaa taatacgact ttttttcttt
     1621 cttgaactgt tgatgatcct attacgatat gaatttgatt tattcgttaa ttcccaccag
     1681 cggatgagta tgtgctaatc taatcaattt gagataaata tatccatgtt catctaacct
     1741 tcctgaaaaa gaaggttgtt cgattctctg actagaatat cgtaaaaaag ggtcttttgg
     1801 ttcttcatct aaaatgacat agtagaaata agatatagtg tcggattcgc ttaaactcat
     1861 agtagctcct atcacaagcc ttgcattact ctgattaaca atagtttgac caccagttct
     1921 ctctttgaaa agaaacaatg gtaatggtgg ttcgtcatat atcgttttat aagcagcgac
     1981 ttttgcaaga ctagaaagat cctttaatct tattgctaaa taacctgatt tcttttgcac
     2041 acgcgctatt tttgttagag cagaagggaa tttctctata tttataattg gagaataaac
     2101 aaaagaagga ttggctacaa agtccaccat cataacttct tcgatccctc cgataattct
     2161 ataggcaaga tattgtccgt ctcgttgttg tggactattt acaaaataaa ttactggcct
     2221 accatcgatg aaatcagtct gaactgccaa gatatattca ttattcatca tcaatgagaa
     2281 agctggtaaa ggtgcc
//
LOCUS       DATABJ010000120         2320 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2043470, whole genome shotgun sequence.
ACCESSION   DATABJ010000120 DATABJ010000000
VERSION     DATABJ010000120.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2320)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2320)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2320
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2043470"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..343
                     /locus_tag="VHF44_01975"
     CDS             <1..343
                     /locus_tag="VHF44_01975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="proteasome subunit alpha"
                     /protein_id="HEX2124349.1"
                     /translation="ALILAGVDKNGASLYLTDPSGTYIGYDAVAIGAGSDQVTEFLEK
                     GYKNNISMEEAGALAIESIYLVSEDKTGTRHVKMAIIDNNTKIMRKVEEDEIDKYASI
                     VKEGADKRTSP"
     gene            413..1096
                     /locus_tag="VHF44_01980"
     CDS             413..1096
                     /locus_tag="VHF44_01980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlpA family protein disulfide reductase"
                     /protein_id="HEX2124350.1"
                     /translation="MAVRIGNKAPNLKVSEWVQGKPTNIDKEINNVILVEVFQVNCPG
                     CFIYGIPDAIKIYRKYNNRNVTVLGIATAFEDFDKNTLDNLKLLLLTGEVIGETRNAL
                     SQYGQLIEGNKLPYKIPFPIAMDSLKKESNVLTERKVMDFIESNVPDFSSFSESDKSV
                     LIERVKQYLKTKQYSAETFEEYGLRGTPSSILIDKNGIVRQINFGANGSIDDMVKDLV
                     KEQNNDKVI"
     gene            1080..1928
                     /locus_tag="VHF44_01985"
     CDS             1080..1928
                     /locus_tag="VHF44_01985"
                     /inference="COORDINATES: protein motif:HMM:NF014637.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEX2124351.1"
                     /translation="MTKSYNLNIAIPDSSLLDEQTKRDKSIKISQIARACSIFRVKTI
                     YIYHDVSFRYEKDDLNLLKTILCYLDTPQYLRKILYPRMEILEYAGILHPIKSPHHKD
                     REDIKNIKIGDVRVGVIAKDKGKFYVDVGLGSLVPFNGSGFIGKKVNVLFTSAYPNLQ
                     TREATEEQFDKTYWGYNVKVISNLAKLLNTAQNTEILITYREGEFFKMKEGKLLERMQ
                     YNRNLLVVFGSPKKGVDEILANEGSSIRYYDFVVNMFPFQGTATVRLEEAIYGTLAIL
                     NYVLTK"
BASE COUNT          878 a          349 c          435 g          658 t
ORIGIN      
        1 tgccttgatt cttgcaggtg ttgataaaaa tggagcctct ctttatctaa ctgatccaag
       61 cggcacttac attggatatg atgccgtagc aataggtgca ggaagcgatc aagtcacaga
      121 attcttagaa aagggttata aaaataatat atcgatggaa gaagctggtg cactagcaat
      181 agaatcaatc tatcttgtaa gtgaagataa gactggaacg aggcatgtaa aaatggcgat
      241 tatcgataat aatacaaaaa taatgcgaaa ggtagaagaa gatgaaatag acaagtatgc
      301 atcaatcgtt aaagaaggag cagataaaag aacatctcca taatttttcc ttcaacttat
      361 aaaatatatt atctagcatt ggtttaaata atgattagcc atttttttag gtatggctgt
      421 caggattggc aataaagcac caaatttaaa ggtatcggaa tgggttcagg gtaagccaac
      481 aaatattgat aaagagatta ataatgttat cctcgtagaa gtattccagg tgaattgtcc
      541 tggttgtttt atttatggca taccagatgc aataaagatt tatagaaagt ataacaacag
      601 aaatgtcact gtacttggta ttgcaactgc attcgaagat tttgataaaa atacacttga
      661 caatttaaaa ttgttgcttt tgaccggaga agtaattgga gaaacaagaa atgcactaag
      721 tcaatatggc caacttattg aaggtaataa attaccttac aagataccat ttcctatagc
      781 aatggattct ctaaaaaaag aatctaatgt tttaactgaa agaaaggtca tggattttat
      841 tgaaagcaat gttcctgatt ttagctcctt ttctgagtca gataaatcag ttctaattga
      901 aagagtgaaa caatacttga aaactaaaca atattcagcc gaaacattcg aagaatacgg
      961 cttacggggc acaccatcct ctatattaat agacaagaat ggcatagtgc gtcaaattaa
     1021 cttcggagca aacggatcca tcgatgacat ggtaaaggac ttggtaaaag aacagaataa
     1081 tgacaaagtc atataatctg aacattgcaa ttcctgattc ttctctatta gatgaacaga
     1141 caaaacgtga taaaagcatc aagatctctc agatcgcaag ggcttgttca atcttcagag
     1201 ttaaaacaat atacatttac catgatgtgt cattcagata tgaaaaagat gatcttaatt
     1261 tattgaagac gatcttatgt tatcttgaca caccgcaata cctgaggaaa attttgtatc
     1321 ctcgaatgga aatattggaa tacgcgggaa ttcttcatcc aataaagtct cctcatcata
     1381 aagaccgaga agatatcaaa aatatcaaaa ttggagatgt ccgagttgga gtaatagcaa
     1441 aagacaaggg aaaattctat gttgatgtgg gtctaggttc acttgttcct ttcaacggat
     1501 cgggttttat aggaaaaaaa gttaacgtat tatttacatc agcatatccg aacctacaga
     1561 ctagagaagc gacagaagaa caatttgata aaacttattg gggctacaat gtgaaggtta
     1621 tttcaaatct tgctaagctc ttaaacacag ctcaaaacac agaaatcctc atcacttata
     1681 gggaaggtga atttttcaaa atgaaagaag gcaaacttct ggaacgaatg caatacaaca
     1741 ggaacctatt agtggttttt ggttctccaa aaaaaggagt cgacgaaata ttggcaaatg
     1801 aaggatccag catcaggtac tatgactttg tggtaaatat gtttcctttt caaggaacag
     1861 caacagttag gttagaagag gccatatatg gaactttagc catattaaat tatgttctga
     1921 ccaaataact gaatctttta ctgcttaaga tttattgatt atggagcgat attataaatg
     1981 ctgtcagatg gagatgttgc aataccagaa tataacggat tatttacaaa tcatcttagg
     2041 acataagcat taacaaagga gttgaacaat gcaaagacct tagcataaag tttttgataa
     2101 tgattaaggt tatgatcctc ttaatttcaa agagaaagga aaatgatgca agtagactag
     2161 tagaatacaa ttgattgaca aatataaata actaagctaa tgaatttgtg caaagacaag
     2221 aaaaagatca catgaaaaca atattataaa ttctaatata attcagtgta gccacataac
     2281 aacaaaagtt catgaaattc cgtaccaagc ttggaaccgg
//
LOCUS       DATABJ010000121         2163 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_527207, whole genome shotgun sequence.
ACCESSION   DATABJ010000121 DATABJ010000000
VERSION     DATABJ010000121.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2163)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2163)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2163
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_527207"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..311
                     /locus_tag="VHF44_01990"
     CDS             <1..311
                     /locus_tag="VHF44_01990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA repair and recombination protein RadA"
                     /protein_id="HEX2124352.1"
                     /translation="GRGTLSERQQKLNKFMHMLVRIAETYAVAVLATNQIQSSPDAMF
                     GDAYRPTGGHVVAHTSTYRVYLKRSGKNRIARMVDSPYHPEREVLFTLSEQGVADPED
                     "
     gene            366..668
                     /locus_tag="VHF44_01995"
     CDS             366..668
                     /locus_tag="VHF44_01995"
                     /inference="COORDINATES: protein motif:HMM:NF013336.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124353.1"
                     /translation="MPSSHGTRRKSRSVLTKDKSARGISYLLIDYKVGDKVIVDVDPA
                     EHNTTPHRRFQGKVGIVEEVGRRTIRLAVMIGEKKKTLCTKLNHIKPLTTEMDNPK"
     gene            665..997
                     /locus_tag="VHF44_02000"
     CDS             665..997
                     /locus_tag="VHF44_02000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase Rpb4"
                     /protein_id="HEX2124354.1"
                     /translation="MTDIVKKEIITLSQVKEILESVKTDDMDQIQRWTFDYVGKFSKV
                     DSNLARKMVSQLIEKCDLKEEEAVEVVNALPSSIEELRAFTFGWKKLILTDTLERMLN
                     ILKMGTES"
     gene            1033..1647
                     /locus_tag="VHF44_02005"
     CDS             1033..1647
                     /locus_tag="VHF44_02005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF655 domain-containing protein"
                     /protein_id="HEX2124355.1"
                     /translation="MSASPTGYSDNRTSMSSSGEQQFQRKYEEYAYILDFMLRGKSNT
                     VRGREGIIIQAIGEERLTLLELLGVQNMSFEVGERVYIGREGRDKVISVLGRLDYDNI
                     SQSAKNELPNIVETIVIANEKRFIDYMNMSQPITPRIHALELIPGIGKTYMMTIIKER
                     DKKRFESFEDIQNRVGLRDPAKLIAKRIIDEIAGEARMNLFVRK"
     gene            1644..>2163
                     /locus_tag="VHF44_02010"
     CDS             1644..>2163
                     /locus_tag="VHF44_02010"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012616.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA adenine dimethyltransferase family protein"
                     /protein_id="HEX2124356.1"
                     /translation="MKWSKRKSFGQHTLIDNRILARIVDASQITREEIVYEAGTGSGV
                     LTKQLCKSAKLVTSFEVDSESYKKACRLYSCYSNLKLINADIFNIYDLQFDIFISNLP
                     YSRSRDALQWLPFQKFKRAIIMTQKEFVDKLQAKPGEKNYRAITVLTQHCFNIERLFN
                     VTKEAFEPQPSVE"
BASE COUNT          791 a          335 c          462 g          575 t
ORIGIN      
        1 tcggacgcgg gactttatcg gaaagacaac aaaagcttaa taaatttatg cacatgctgg
       61 taagaattgc agaaacctat gctgttgcgg ttttggccac taatcagata caatcttctc
      121 cagatgcaat gttcggagat gcatataggc caactggcgg gcatgtagta gctcatacca
      181 gcacatatcg cgtatatctt aaacgatctg gtaagaaccg gatagctaga atggtagaca
      241 gcccctatca tcctgaacga gaagtattat ttactttatc tgaacaaggt gtagcagatc
      301 ctgaagacta aggcttaaaa ttaggtagat aatattaaat taagggtttt ggtaatgggt
      361 ttgtcatgcc aagctcacac ggtacaagaa gaaaatctcg atctgttctt acaaaagata
      421 aatctgctag aggaatttcg tatctgctta ttgattataa ggttggtgat aaggttattg
      481 tagatgtgga tccggcagaa cataatacaa ctcctcaccg gagattccaa gggaaagttg
      541 gtattgtaga agaagtgggt agaaggacaa taagattggc tgtaatgata ggagagaaga
      601 aaaaaacatt gtgtacgaag ctcaaccata ttaaaccctt aacgaccgaa atggacaacc
      661 ccaaatgaca gatatagtca aaaaagaaat tattacgctt tcacaggtaa aggaaatctt
      721 agaatcagtc aaaacagacg atatggacca aatccaaaga tggacttttg actatgttgg
      781 gaagttttca aaggtagatt caaatcttgc tcgtaaaatg gtaagccagc taattgaaaa
      841 atgtgaccta aaagaagaag aggcagtaga agttgtcaat gccttgccta gttccataga
      901 agaactaaga gcgttcacat tcggatggaa aaaacttatc cttacagata ctttggaaag
      961 aatgctaaat atacttaaaa tgggtactga aagttaaata aaaagtaatc agtaaatata
     1021 ctgggaagta tattgtcagc atcgccgaca ggctactctg ataaccggac aagcatgtca
     1081 agttccggag aacagcaatt tcaaagaaag tatgaggaat atgcttatat attagatttc
     1141 atgcttagag gaaaatcaaa tacagtaaga ggaagagaag gcataatcat tcaagccata
     1201 ggagaggagc gtttaactct gttagaattg cttggtgttc aaaatatgag ttttgaagtg
     1261 ggagagcgag tgtatattgg acgcgagggt agagataaag tgataagtgt tcttggcaga
     1321 ttggattatg acaatatttc acagtcagcg aaaaatgaac ttccaaacat agtagaaaca
     1381 attgtgattg caaacgagaa aaggttcata gattatatga atatgtctca gccaattaca
     1441 ccaagaattc acgccctcga attgatcccg ggaataggga aaacatatat gatgacgata
     1501 atcaaggagc gcgacaaaaa aagatttgaa tcatttgaag atattcaaaa tagagttgga
     1561 ttaagagatc cggcaaaact tatagcgaaa agaatcatag atgaaattgc tggtgaagct
     1621 agaatgaacc tatttgttag aaaatgaaat ggtctaaaag aaaatccttt ggccagcata
     1681 cgctcataga taatagaatt ttagcaagga tcgtggatgc ttcacaaatt actagagaag
     1741 agattgttta cgaagcgggg actggaagtg gggttttaac gaagcaactt tgcaaaagtg
     1801 ccaaactagt tacctctttc gaagtagaca gcgaaagtta taaaaaagcg tgtcgccttt
     1861 attcttgtta ctcgaattta aagttaataa atgcagacat tttcaatatt tatgatttgc
     1921 aatttgatat tttcatctca aatcttccat actcgagaag tagagatgct ttacaatggt
     1981 tgccatttca aaaatttaaa cgagctataa ttatgacaca aaaagagttc gttgataaat
     2041 tacaagccaa gcccggagaa aaaaattatc gagcaattac agttttaact caacactgtt
     2101 ttaacataga aaggctattt aatgtaacta aagaagcatt cgagcctcag ccctctgtgg
     2161 agt
//
LOCUS       DATABJ010000122         1733 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1614264, whole genome shotgun sequence.
ACCESSION   DATABJ010000122 DATABJ010000000
VERSION     DATABJ010000122.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1733)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1733)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1733
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1614264"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(330..905)
                     /locus_tag="VHF44_02015"
     CDS             complement(330..905)
                     /locus_tag="VHF44_02015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methane monooxygenase/ammonia monooxygenase
                     subunit B"
                     /protein_id="HEX2124357.1"
                     /translation="MPRYTDMGKSTTLIVTALASVMVLHIAFAFIPVAEGHGVQAQLQ
                     SRFVRIQDEAFSAQTLQTGEEITVTGELQSLVNRPLRAWISIFSESVNAGNRWEFVAR
                     DPPGNVFEIPPQGTIPYELRAKALEPGVYHVHTQLNVAGVGPGLGPGQTVQVSGEAIL
                     KPVPWGNVAYQVILIGAGLGVTFATRPWQVI"
     gene            1156..1710
                     /locus_tag="VHF44_02020"
     CDS             1156..1710
                     /locus_tag="VHF44_02020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methane monooxygenase/ammonia monooxygenase
                     subunit C"
                     /protein_id="HEX2124358.1"
                     /translation="MPALIPKEVEIQRLKKIYIMIVMLGSIAASVEVDNFVDGSLHQT
                     AIRDSAFTPAHWWLYSHFVALPLGWGFVAMYDRRVPILRGPNNSMNTGLKITIIGYLA
                     TMFTIGINEMWHFWFVEEIFAVPNHWMFNMGVVVAFMGALAYVVRVYARMVELGAETP
                     AKNPYVAEMYKLALEGKLYSRSIP"
BASE COUNT          569 a          317 c          332 g          515 t
ORIGIN      
        1 cctccagaga acaacaaatg aatattatga acagttgtta agtcttctct ggaagttcat
       61 tctcctattt ctgctcatca aaacaaaatc tattattgca atggagacga ttattatgtt
      121 gtatatagag aattaaccga atcataaatt atgctttgaa accaaagact tgataagaat
      181 ggaaagtgac aattattata aaacaataaa gagataataa gcgtttgatc cttagcttta
      241 aagatatcat aatagagtag ataaccttta ggaattgtaa gtataaagtt aaaatctttt
      301 aaaaataaaa atgaggaaga attattcttc taaataactt gccatggtct tgtagcgaat
      361 gttacaccga ggcctgctcc aataagaatt acttgatagg ctacgttacc ccaaggaact
      421 ggctttaaga ttgcttctcc acttacctgt actgtctgtc caggaccgag gcctgggcca
      481 acacctgcaa cattaagctg tgtgtgtaca tggtatacac caggctcaag tgcttttgcc
      541 ctcaattcat atgggatagt tccttgagga ggaatctcaa atacatttcc tggtggatct
      601 cttgcaacaa attcccatct atttcctgca ttaactgatt cactaaatat tgagatccat
      661 gctcttaggg gtctatttac cagactctgt agttcgcccg ttactgttat ttcctcacca
      721 gtctgaagtg tttgagctga aaaagcttca tcttgaatgc gtacgaatct actttgaagc
      781 tgtgcctgca caccatgacc ctctgcgact ggtatgaatg cgaatgctat atgtagtacc
      841 atgactgacg caagagccgt gacgattaat gtcgtgcttt tacccatatc tgtatatcta
      901 ggcataggtg gacggacaaa gatatatgct ttgctataac tcccatacag taaaaaacaa
      961 aagataatca atggtgatta tcaacggaga taatcgtaaa tctattaata gaataattaa
     1021 aaccatcgtc aatttctgta tttttaataa taaaaaatta atttgatata ataaatataa
     1081 gaaacttgat gcaaatgtag ataacaagtt tatatagtag atctatcaaa atgatattga
     1141 cgaataatgg cacaaatgcc agcgctaata ccaaaagaag tagaaatcca acgactaaag
     1201 aaaatctata tcatgattgt catgctgggt tcaatcgcag catcagtcga ggtagataac
     1261 tttgtcgatg gatcactgca tcaaacagct atcagagata gtgcatttac tccagcacat
     1321 tggtggttat atagtcactt cgttgctctg ccactaggat ggggctttgt agcaatgtat
     1381 gatagaagag taccaattct tagaggtcca aacaactcta tgaacacagg tttgaaaata
     1441 accattattg gttatttagc aaccatgttc actatcggaa ttaacgaaat gtggcatttc
     1501 tggtttgtag aggaaatatt cgcagtcccc aaccactgga tgttcaacat gggagtcgtc
     1561 gtggctttca tgggtgctct tgcatacgtt gttagggttt atgcacgtat ggtagaactt
     1621 ggtgcagaaa caccagcaaa gaatccgtat gtggccgaga tgtataagct agcattagaa
     1681 ggcaagcttt acagtagatc tatcccataa gagataaaat cggtcacctg cga
//
LOCUS       DATABJ010000123         1869 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_311509, whole genome shotgun sequence.
ACCESSION   DATABJ010000123 DATABJ010000000
VERSION     DATABJ010000123.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_311509"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(261..812)
                     /locus_tag="VHF44_02025"
     CDS             complement(261..812)
                     /locus_tag="VHF44_02025"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124359.1"
                     /translation="MLFFRKYLKDLNSVRNEVERIIAKQKSGSPYDVSPFKPRIEELL
                     DSISDFNLDWNNLPVVFRIARIVISSSTTQQHDVSANNDNDTDSGKGIITYQENIVLP
                     DTKHDLELVTKMLNYMREQKKLKRTDMPLFIHPDEILLAYREGKISFSADEIQTQMMI
                     IFQKGSIMYVGFVFGRDYVILKN"
     gene            complement(1254..1541)
                     /locus_tag="VHF44_02030"
     CDS             complement(1254..1541)
                     /locus_tag="VHF44_02030"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124360.1"
                     /translation="MNSVKSSAEIEDTSKKAITALYGSDVKDFKVRVVLPYASDQLIA
                     KGGLPTEERRDSWDVQVTFLLNGTQYTVDLIIQEKDGQITYSRLIDKMTPL"
BASE COUNT          538 a          361 c          332 g          638 t
ORIGIN      
        1 cttggcagcg tagctaatgc agtagttagt aacgcacgtt gtcctgttat ggtggtgcgt
       61 tgataaaaat tgcatatcaa cagtttggat ttcagtctta atatataatg agcaatttat
      121 tttaggccca tatgcgaata tcttcttctg tgtgatctaa ccgcatagca agtacaacaa
      181 accctaacca aaataattag aggattatat caccatcata acaggagaaa gttagtgcta
      241 tatggttcta aataggatga ttagttctta agtataacat aatctctccc aaatacaaag
      301 ccaacataca ttattgatcc cttttgaaat ataatcatca tttgggtttg aatctcgtct
      361 gctgaaaacg aaatttttcc ttctctatag gcgagtagga tttcatcagg gtgaataaaa
      421 agaggcatat ctgttctttt tagctttttc tgttcacgca tatagtttaa catctttgtc
      481 accaattcta gatcatgctt ggtgtcagga agcacaatat tttcttggta tgtaattatg
      541 ccttttccgc tgtcggtgtc gttatcgtta ttagcgctta catcatgttg ctgagttgtg
      601 ctgctgctta ttactattct tgcaatcctg aaaacaactg gtaaattatt ccaatcaagg
      661 ttgaagtcag agatcgaatc cagcaattcc tctatcctgg gtttgaatgg tgaaacgtca
      721 taggggctgc ctgatttttg cttggcaatt attctctcaa cttcatttct gacagaattg
      781 agatctttta aatatttacg gaagaatagc aattcttatc tcctctgaca cttttagcgc
      841 catactagat gaagatcgcg tacagatgta tttttaatgt tctctatatc tggtaaatac
      901 tagcatctac tttcatcgat cttctgaagc atctagctga agagaaaaaa tatgtattca
      961 caattgccta aacgtgttat ctacactgct cacttttggc ttatttgctc tagatggatt
     1021 agccggctat catgtacgaa gtgccaacta tgataccaaa accacgaatg gcagccttta
     1081 ttgttacggc acatgtccta atcttttcac ctattgcagt ttttgcttat acttcattgg
     1141 cccagatgtt gttgcagtca tcattgcttt tgatatatac tgtatcatac tgtatatcct
     1201 gatgttaaaa aatcattttt tatttaattt ctttagtata gcctgtacat aaactaaaga
     1261 ggtgtcatct tatctataag cctactataa gtaatctgtc catccttctc ttgaattatt
     1321 aagtcaacag tatattgagt tccatttaag agaaatgtta cttgcacgtc ccaagaatct
     1381 cttctctcct ccgtaggcaa tccaccctta gctataagct ggtctgatgc atagggcaat
     1441 acaactctga ctttaaaatc cttaacatcc gatccataga gtgcagttat tgccttttta
     1501 gaagtatctt cgatttctgc acttgatttt acagaattca tgtttaccaa tatggctgct
     1561 actcatttaa aagtatgatg actttatccg cgaggttcag gtgaagtcga attgcagttt
     1621 tcttactgtg tgggatatat cggagcaatc ccgatacttc ccgaacagct tccatatcgc
     1681 tacgagctgt cggaaatatt taaaaataat catctgatat gtatgtgaag aaccaaaatg
     1741 ggaatggaat tctatggcga ctcgtacaga ggcaatgacg aacccatttt tgtgggaatt
     1801 ccaacatttc tgaagttgcc ttcgatcaga agtcatggag aactgcaaac agtcaagccc
     1861 gatatagcg
//
LOCUS       DATABJ010000124         1554 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_965906, whole genome shotgun sequence.
ACCESSION   DATABJ010000124 DATABJ010000000
VERSION     DATABJ010000124.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1554)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1554)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1554
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_965906"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            89..271
                     /locus_tag="VHF44_02035"
     CDS             89..271
                     /locus_tag="VHF44_02035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124361.1"
                     /translation="MRDRIDSILPPKLSGIKTRLDQDSNSTISRFDVVSDDIGPKSRF
                     LPTIIKNNLSFNDFLC"
     gene            complement(440..1456)
                     /locus_tag="VHF44_02040"
     CDS             complement(440..1456)
                     /locus_tag="VHF44_02040"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HEX2124362.1"
                     /translation="MINNNIGVNFQGFESSAYQNRKTPTPPRDYIEDSFQIFSKNNIF
                     MLRVPYSWESWECDKSNFYEDLEKISKVADAYNILCIYDNHQWEGSSWLGWGIGMPNS
                     LLSANYQKNTGRRPNRNVIKDFWKKWWNHKIINRDNVDGWEAQISFVKEVISYLNNNK
                     STFGFEILNEPQVYHVLDYNKVGNYHNYAMQELRKCTDKLLFFNAAISHIPFDNPILQ
                     SRVAPTTRVNTVYDVHMYPPSSYNMRFFRLVCSLLQNVQIYIGEFNSGYKYGANLSKN
                     KLMNYLKTFHKFKLFGWALWRWYYTQDSNIPAFNLTKICNGKISQNINFCNLIEALRG
                     IYSQ"
BASE COUNT          509 a          264 c          226 g          555 t
ORIGIN      
        1 taattgcttc ctttcaacag tataccagca atgattattc tatatactca acagtataag
       61 aacacgtata gttagcaggc ttggtggaat gcgggacaga attgactcta ttttaccacc
      121 caaactttca ggtataaaga caagattaga tcaagatagt aatagtacaa ttagtagatt
      181 cgatgtagtc agtgacgata taggtcctaa aagtagattc ctacctacaa tcataaagaa
      241 taatcttagc tttaatgatt ttctttgttg atgagtagca caaagtgata gtttattggg
      301 atcattattt acaacttttg tcccttcgtt cttcattaac aaaatgaaat cctaaattat
      361 cttgtgaaga aaaatttctt tatcaaaaca ttcttcaaat gcttctattt ttgatctatg
      421 tctaattttt cgaattattt tactgcgaat atattcctct caatgcctca attagattac
      481 aaaaattaat gttctgacta atctttccat tgcatatctt tgttaaatta aaagcaggaa
      541 tgttactatc ttgagtataa taccatctcc ataatgccca tccaaataat ttaaatttat
      601 gaaacgtttt taagtaattc attagtttat ttttagaaag gtttgctcca tatttgtagc
      661 cagaattgaa ctctccaata tagatctgaa cattttgtaa aagagaacat acaagtctga
      721 aaaatcgcat gttgtatgac gatggaggat acatatgaac gtcataaaca gtattaaccc
      781 tagtagttgg agccactcgt gattgtaata taggattatc gaaagggatg tgtgaaatag
      841 cagcattgaa aaataaaagt ttatcagtgc attttcttag ctcctgcatt gcataattat
      901 gataatttcc aaccttatta taatcaagaa catggtatac ttgtggttca tttaatatct
      961 cgaaaccaaa tgtagatttg ttgttattta aataagagat aacttccttt acaaaactaa
     1021 tttgagcttc ccatccatcg acattatccc tatttataat tttatggttc caccatttct
     1081 tccaaaaatc ttttatcaca ttcctgtttg gtcgccttcc agtatttttc tgataattcg
     1141 cagataacaa gctattgggc attccaatcc cccatcctag ccatgaagaa ccttcccatt
     1201 gatgattgtc atatatgcac aaaatgttgt atgcgtcagc tactttactt atcttttcga
     1261 gatcctcgta aaaattgctc ttatcacatt cccaagattc ccatgaataa ggaactctca
     1321 gcatgaaaat attattttta gagaatattt ggaatgagtc ctctatataa tcccgcggag
     1381 gagtaggcgt ttttctattt tgataagcag aagactcaaa tccctgaaaa tttacaccta
     1441 tgttattgtt gatcattttt tgaagaaagt attatcttaa taaggtaagc aaactaattc
     1501 aagctttagg ctgttattca tatctttcta atctatcatt attatgtgat agta
//
LOCUS       DATABJ010000125         1502 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_530171, whole genome shotgun sequence.
ACCESSION   DATABJ010000125 DATABJ010000000
VERSION     DATABJ010000125.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1502)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1502)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1502
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_530171"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..508)
                     /locus_tag="VHF44_02045"
     CDS             complement(<1..508)
                     /locus_tag="VHF44_02045"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124363.1"
                     /translation="MRIVFLAIHLSSNFVIIIIVLLLFYLTEISVSALSPSYTTPSLS
                     YGIKELAFLSSHDDSSSDAVSSNTTMILSPDSSTIVYETEAFVASPTVKTFVIYMANE
                     FHENWPEESHKLLTNKNAYTVPTNLTISNGTSIAFHMADAPWDTPHDYVVRVTDVNTN
                     ETALQTPLL"
     gene            854..1063
                     /locus_tag="VHF44_02050"
     CDS             854..1063
                     /locus_tag="VHF44_02050"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124364.1"
                     /translation="MRHELCPGRQFMEDAPSVGLKASLKWFLAIQEKKNSNAINAITS
                     SEWTNCSSLELSPSFREHLVMQLLY"
     gene            complement(1301..>1502)
                     /locus_tag="VHF44_02055"
     CDS             complement(1301..>1502)
                     /locus_tag="VHF44_02055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1259 domain-containing protein"
                     /protein_id="HEX2124365.1"
                     /translation="VTTIHNHMLDESPKLLFMHWTVTGNPDEIVQQAREAIMQTSSYA
                     TITDPNAAGNATRPGTPSSAGP"
BASE COUNT          489 a          260 c          289 g          464 t
ORIGIN      
        1 tgagaagcgg tgtttgcaac gcagtctcgt tggtgtttac atcagttacc cttacaacat
       61 aatcatgcgg agtgtcccat ggtgcgtcag ccatatgaaa tgcaatactt gttccatttg
      121 atattgtcaa gtttgtcgga acagtataag catttttgtt tgtgagaagt ttatgagatt
      181 cttcaggcca gttctcatga aactcatttg ccatataaat tacaaatgtt ttaacagtag
      241 gagaggccac gaacgcctct gtttcataaa caatggtcga ggaatcgggt gaaagtatca
      301 ttgttgtatt agatgaaact gcatcactac tactatcatc atgggacgac agaaatgcta
      361 gttctttgat tccgtaactt aaactgggag tcgtgtaaga aggagaaaga gcagatacgc
      421 ttatctctgt caaatagaag aggagaagca cgataataat aataacaaaa ttactgctta
      481 gatgtatggc taaaaatacg atcctcataa ttttatccca cctttataat gaagctgtta
      541 tttcaatatt gttaatattc attaatatac gcattgaagt tttcgatata taccacaacg
      601 ctactaaaat atattattca aatctaaaat ataagaagaa ggaaggattt gaatcgaatt
      661 cgactactag tgcaacaata attttatgta ctccatatta ttcggtatgt attagttttt
      721 agcaatgaaa aagcgctagc acgtgtgtgt atcataacta ctttttatag caatcccctt
      781 tcgaaattga agtgatcata gagcactata aagagtggaa tcctccgatt accttttatg
      841 ccgatacgta ttgatgcgtc atgaattatg cccaggcaga cagtttatgg aagatgcccc
      901 aagtgtagga ctaaaagcca gcttgaagtg gtttctcgca atccaggaaa agaaaaattc
      961 aaatgcaatc aatgctatca caagttcgga atggacgaac tgtagttctc ttgaattatc
     1021 tccctcattt cgggaacacc tagtaatgca attattgtac taatagtgaa acttttggtc
     1081 gttatgacct gtgttcgact ttcattggtt ttctgatcaa atagataatg attcacttct
     1141 tgcacatcgg tacaaatgac atcatgtgac aactaccacc aagaatgaca aatcaaaacg
     1201 gttaacacag tatcagagaa gaactgcaat agattagaat cataacatga atattgattt
     1261 atagaaaaaa agagggagag agttagagat tattctctaa tcaaggtcct gcagagcttg
     1321 gagtaccagg tctagttgca tttccagcag cattaggatc agtaattgtt gcataacttg
     1381 acgtttgcat tattgcttct cttgcttgct gtacaatttc atcaggattt ccagtgacag
     1441 tccaatgcat aaacagcagc tttggcgatt catcaagcat atggttatgt atagtggtta
     1501 ca
//
LOCUS       DATABJ010000126         2434 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_966502, whole genome shotgun sequence.
ACCESSION   DATABJ010000126 DATABJ010000000
VERSION     DATABJ010000126.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2434)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2434)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2434
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_966502"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..423)
                     /locus_tag="VHF44_02060"
     CDS             complement(<1..423)
                     /locus_tag="VHF44_02060"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124366.1"
                     /translation="MEQQNKIRVEVKYVFKFIPILILIHTPFGLKFFDWVAETKAARI
                     YARFNRYLMPVITALAIVLVIGGLMTIISNEPAREASRDLGPRSIFLIPGVNPFLPWH
                     YALISLFITIIIHEAGHGIVARVHNVKLESTGVVLFFIV"
     gene            626..1318
                     /locus_tag="VHF44_02065"
     CDS             626..1318
                     /locus_tag="VHF44_02065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124367.1"
                     /translation="MVDNEMSTSDAKKRIAEPPLNMLFNLSLLAKKDVWDIDIPMLLQ
                     MLLSIINNTGKKDLRVCGIAVLSSSMIHRLKVESIFRLEKIATQRKGVEDSRPLADIP
                     QLRPVEIPYRIESTYPVSLEDLLRVLENMIFELANPRPKKKQIELEPVQTFNFDQYLL
                     KFEQILQEYENMILDIVRADGTAMFTTLVKKMEPIDVVRCFIAILYLAMEEKINLESI
                     EEPEDIKITIKA"
     gene            1358..1885
                     /gene="scpB"
                     /locus_tag="VHF44_02070"
     CDS             1358..1885
                     /gene="scpB"
                     /locus_tag="VHF44_02070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA];
                     GO_process: GO:0007059 - chromosome segregation [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HEX2124368.1"
                     /translation="MRQSLPDEEITARIEAALYSAGRPLSIDDLLRSSGTNSKEKILK
                     VVNDLIRKTNSVFKAIEITQLEEGTFVFQLKPVYTPLIRRFAQQPIISSSALKTLSYI
                     AYEQPLTSKRLLQIRGSQVYHHLKELQHICFIEHEKLGRLKVYRTTKKFQDYFGVTDI
                     NSIKNKLVLTKNGAI"
     gene            1948..2331
                     /locus_tag="VHF44_02075"
     CDS             1948..2331
                     /locus_tag="VHF44_02075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000314 - organellar small ribosomal
                     subunit [Evidence IEA];
                     GO_component: GO:0022627 - cytosolic small ribosomal
                     subunit [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8e"
                     /protein_id="HEX2124369.1"
                     /translation="MRKSVENLAGRKVSGGRKVALRGRRKFEIDRYPNEATLGPLDIV
                     SRKVRGRNIKTAFKAVDFVNITDPASNKTIKAKIIRVSKNTANKDYERRGVISKGAVL
                     ETEAGPARVLSRPGQHGTVNAIAIK"
BASE COUNT          857 a          405 c          449 g          723 t
ORIGIN      
        1 tactataaaa aataaaacga ctcctgtcga ttctaactta acattatgaa ccctagccac
       61 tatgccatgt cctgcttcat ggataataat ggtaataaat agagatatca atgcataatg
      121 ccaaggaaga aatggattca cgcctggtat aagaaaaata gagcgtggcc ccaagtctcg
      181 actagcttct cttgcaggtt catttgaaat tattgtcatc aatcctccta ttactaggac
      241 tatagctaac gcggtgataa ctggcattag atatctattg aatcgcgcat agattcgggc
      301 agctttcgtt tcagctaccc agtcaaaaaa cttcagacca aaaggtgtgt ggatcaaaat
      361 taaaataggt ataaatttga atacgtactt cacttccaca cgaattttat tctgctgttc
      421 caagcaagtt acctatgtaa caacgctatt taaattaatt catcgcaacg ttataatgct
      481 aaaaaatatt tctacactca ctagcggcat ttctatttga tatgtgtgat atttacatgc
      541 gctattagat tcctattaag actttcaaca ttcaattgtt aatttttaga tcacactatt
      601 atatctcaat aatgagaact attcaatggt tgataatgag atgtcaacaa gcgatgccaa
      661 aaagagaatt gcagagccac cactgaatat gttatttaat ctatcgcttc ttgcaaagaa
      721 ggatgtatgg gatatcgata ttccgatgct tctccaaatg ctgctaagta ttatcaataa
      781 cacgggaaag aaagatttga gggtttgtgg tattgctgtg ttgtcctcat ccatgataca
      841 tcgcctaaaa gtagagagca tttttagact agaaaaaata gctactcaaa gaaaaggagt
      901 agaagattct cggcctttag cagatatacc acaacttcgt cctgttgaga ttccgtatag
      961 aatagaatct acatatccag tgtcattgga agatttattg cgtgttttag aaaatatgat
     1021 ttttgaactt gctaatccaa gaccaaaaaa gaaacagatt gaacttgagc ctgtccagac
     1081 attcaatttc gatcaatatc tcttaaaatt tgaacagata ttacaagaat atgagaatat
     1141 gattctagat atcgttagag ctgatggtac tgccatgttt acgacacttg tcaaaaagat
     1201 ggaaccaata gatgttgttc gatgctttat tgctatactt tatttggcta tggaagaaaa
     1261 gataaacttg gagtcaattg aggagccaga agatataaaa ataacaataa aggcttaacg
     1321 gaaataataa atcaatcgta gagtgaaacc tatcagattg cgtcaatctt tacctgatga
     1381 ggaaattact gcaagaattg aggcagcact ttattctgca ggaagaccgt tatccataga
     1441 tgatctttta cgatcatctg gaacaaattc gaaggaaaag atacttaaag ttgttaatga
     1501 tttgattaga aaaacaaact ctgtctttaa ggccattgag attactcaat tagaagaagg
     1561 aacttttgtc tttcagttaa aacccgttta taccccatta attagaagat tcgcacaaca
     1621 gcctataatt tcgtcttcag cccttaagac actgtcttat attgcgtatg aacaaccact
     1681 cacctcaaaa cgtctccttc agatcagagg gagccaagtt tatcatcatc ttaaagaatt
     1741 acagcatatc tgttttattg aacatgaaaa acttggcagg ttaaaagtat atagaacaac
     1801 aaagaaattt caggattatt tcggagtgac tgacataaat tctatcaaga ataagttagt
     1861 attaactaaa aatggagcaa tataataata tactgatcga cagacagaaa aatcttaatt
     1921 acagtcgagc tcttaggagt tccaagtatg agaaagtctg ttgaaaattt ggctgggcgt
     1981 aaagtatctg gtggcagaaa ggtagccctg aggggaagaa gaaaattcga aatagataga
     2041 tatccaaacg aagccactct gggaccattg gatattgtat caagaaaggt acgtggtagg
     2101 aatattaaaa ctgcttttaa agccgttgac tttgtaaata tcactgatcc cgcttcaaat
     2161 aagacaatta aggctaaaat aattcgggtt agcaagaata ctgccaataa ggattatgag
     2221 agacgtggtg tcataagcaa aggggcagta ttagaaaccg aagcagggcc tgcaagagtc
     2281 ttatcaagac caggacagca tggtacagta aatgcaattg ctattaaata ggaatataat
     2341 gcgcggttcc atgcatttaa ttatttcaaa tatttgatag tactgtgtaa ttatatgcaa
     2401 atatggtttt aatattgtta tttgactgat acct
//
LOCUS       DATABJ010000127         1842 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_530357, whole genome shotgun sequence.
ACCESSION   DATABJ010000127 DATABJ010000000
VERSION     DATABJ010000127.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1842
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_530357"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            310..432
                     /locus_tag="VHF44_02080"
     CDS             310..432
                     /locus_tag="VHF44_02080"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124370.1"
                     /translation="MIKKNATAARGAGASTPPPRQSTPVTFTLMSKFPLHQESL"
     gene            complement(1074..1286)
                     /locus_tag="VHF44_02085"
     CDS             complement(1074..1286)
                     /locus_tag="VHF44_02085"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124371.1"
                     /translation="MTKDPPTIPIDIASRYGPSSFKCFNCDKSKADFFVTKGSIQSPT
                     DVVPLCFECYAHKRRWIWQKVRKPQQ"
BASE COUNT          582 a          347 c          342 g          571 t
ORIGIN      
        1 atagtgattg gccttattag ggaagtaagg tgtactttca tcagaaaagg ttgcagtaac
       61 aaagtaaatg tcgataatat tgtcgctttt tttccaattt tcaagtagag attccgattg
      121 cttgtcgtga gggatgcaca aatagcctcg cgtttccaag ccgccagtgc tcgccaatcc
      181 taaacaaagg taatataact actatttatc tattaacgcc tatcctgtcc ctttaattag
      241 ggccacctct atagaatatc gaactcgtga gatttgcgca ccactaagta aaataatgaa
      301 aataaaaata tgattaagaa aaatgcaact gcggcgagag gagcaggggc atcaacacca
      361 ccaccaagac aatcgacccc cgttacattt acgctaatgt ctaagttccc gctacaccaa
      421 gaatcattat aaacgcaaac taaaggaatt cttcgatttt atcggtttgc atagcaactc
      481 gctagatgat cagggtcgag ctttttagcg gtggctagag cagaaaaata ggggttatta
      541 atactaacac taataatgat aatgaagatg atgttaatgg taacagcaat aacaatggag
      601 agtattgggt agtagacaca agcaaaggta cttgagtata cattattgct atttatctca
      661 aattcgggtc aaaattatca atcatattat tcatcagacc gctggttata accagcctta
      721 cacctttagg ggagaaggtt ttcattggta caagttaact tcgaatctaa atgtataaaa
      781 gtggtggctt tgaacctgca acaaaacccg ctggctgaca ggtaccagat aatgagagag
      841 aagatcagac ggcgaggata cggccgcatt tgcgagtttg tctctccgta tgccctcaga
      901 gacacccatt cacttgcaat atttcaaata tacttttgat ctatttagct tttagaaaac
      961 cttcatcgac tttagatttt ttactacaag aacgcgtttg agatgtgaat tcagattttc
     1021 ctcctcatcc gatgataagc ttataaaaat gtcgtctatg gtgttattct ctcttattgt
     1081 tggggttttc taactttctg ccatatccat ctcctcttat gtgcataaca ctcaaagcac
     1141 agtggaacga cgtccgttgg gctttgtatg gaccctttag ttacgaaaaa atcggctttg
     1201 cttttatcac agttgaaaca tttgaagctt gaaggtccat atcttgatgc tatgtctatt
     1261 ggaatagttg gagggtcttt tgtcatattc ttccaggtgc ctctttctta cgagccaaca
     1321 cagaagaaga tctaattatg atggatttca ggatataccg ctgctcttaa ctaaaaataa
     1381 gactatcgtc tgattatact ttaaaaaaga ttaccagcta tagattgttt ctttctacag
     1441 gatcaatatc taattaaaat gtaattacac aaatataaaa aaagattatt tcttcagacg
     1501 tttctcgctg tgccaaaatg cacggttcaa ttttcgtcgt tgtcatttcg actttgatat
     1561 ctatgctgaa aatatgttaa ttgttttccc accgctctaa ttcatcttac tatacagaga
     1621 gagaaaaggt actactgagg atgctcatag cttgagaatc atctacgtaa ttactagatg
     1681 aggaaaaaat aaaagagtta gtagtaaagg caaacactag ctttaccata aattaaggtc
     1741 acaattttgt cttttcatca ccagttatgt aatgttctat ggggatcaaa aatgacgcac
     1801 cgatttagct attaacgcca attttagcca ggtaatgtta cc
//
LOCUS       DATABJ010000128         2032 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2048564, whole genome shotgun sequence.
ACCESSION   DATABJ010000128 DATABJ010000000
VERSION     DATABJ010000128.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2032)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2032)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2032
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2048564"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1054)
                     /locus_tag="VHF44_02090"
     CDS             complement(<1..1054)
                     /locus_tag="VHF44_02090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis/translation initiation
                     ATPase RLI"
                     /protein_id="HEX2124372.1"
                     /translation="MAVLDQELCQPRKCGLECIIYCPVNKTGGECIVQRPEDGKALIS
                     EDLCTGCGICVKKCPFDAIVIVNIAKELSEDKIHQYGVNSFRLYRLPIPKKGSVVGLL
                     GRNGIGKSTIVNILSGNLHPNLGNYERDIEWDDVLKHYQGTELKSHFERIANGDLRAS
                     IKPQLVYLIPKAFKGSAKELLKKYDERKVTDSLVEELGLNNSLDRNVNELSGGELQRL
                     AVAVASAKDADYYFFDEPSSYNDVYQRLAVSRVVQNLSRQGKSVMVVEHDMTLLDYLS
                     DYIHILYGEPGAYGIVSRIQSTKLGINNFLEGFLPAENVRFREKSFRLDIRSSIDDVI
                     MDIPVAHYSDIAKSFLS"
     gene            1258..>2032
                     /locus_tag="VHF44_02095"
     CDS             1258..>2032
                     /locus_tag="VHF44_02095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124373.1"
                     /translation="MVDKLVHRNRTLSSKTTYQRTHYLDIIKMPHFFTRVYHSQSIFL
                     ITIVTSTILLLSWTGILFSSAFALQAPGTQNEEEALETPGNISSNIDTKDTVLNKTGT
                     DLPILEQLSDKGNYLIQVRWGQDPSLLAASGFDMEIVFLNASGSEATAESFPIKETNV
                     TGDSFVGSGGYTDPSIIQRMVPIESYDISVYSDNGEQLWKKANQPVQAGRAYERITFE
                     NPYKGGITIQISNIKTAGNMGGTIGGPLSGPDENNPTDDR"
BASE COUNT          655 a          398 c          351 g          628 t
ORIGIN      
        1 atgacagaaa agactttgcg atatccgaat aatgagcgac aggaatgtcc ataatcacat
       61 catcaattga acttcttata tccaacctaa aggatttctc tctaaatcgc acattctctg
      121 cagggagaaa cccttcaaga aagttattga taccaagctt tgtactttga attctggaga
      181 caataccgta tgcgcctggt tcaccatata gaatatgaat ataatctgag agataatcta
      241 ataatgtcat atcatgctca actaccataa cacttttacc ctgtcgcgag agattttgaa
      301 ccacccgaga gacagcaagt ctttggtaga catcattgta tgaagaaggt tcgtcaaaga
      361 agtaataatc agcatccttt gccgatgcta ccgcaacagc caatctttgc aattcgcctc
      421 cgctcagttc gttaacattt cggtcaagag aattattcaa tccaagttct tctaccaaag
      481 aatctgtcac tttacgctcg tcatattttt ttaatagctc ttttgcactt cccttaaatg
      541 cttttggaat aagataaact aattgaggtt tgatagaggc gcgcaagtcg ccattagcga
      601 ttctctcaaa atgtgatttt aattcggttc cttgatagtg cttgagtaca tcatcccact
      661 caatatctct ttcataattt cccaaattgg ggtgaagatt tcctgacaaa atattgacta
      721 ttgtcgactt acctattcca tttcttccga gcaagcccac gacagatcct ttctttggta
      781 ttggaagacg atatagtcta aatgaattga caccatattg atgaatttta tcttcactca
      841 attcctttgc gatgttaaca ataactatgg cgtcaaaagg acatttcttt acacatatac
      901 cgcagccagt acaaaggtct tctgaaatta aggcctttcc atcctcagga cgctgtacta
      961 tacattctcc acctgtttta tttactggac agtatatgat acattctaat ccacattttc
     1021 ttggctggca taattcttgg tctagaacag ccactctatg tgttgactct gttgaatttc
     1081 ccaatgtaat atgactaatt tttgcaataa tatattataa tccttgtgca agaaacagag
     1141 aagatatttc tcctaaagca tacaaaaagg ctatttattt ctgtggactc attgttagat
     1201 atattttgct atacaagata cctcctagtt tatattttat tttgaccatt atcttttatg
     1261 gtagataaac tcgttcatag aaatcggaca ctatcctcaa aaacaactta tcagaggact
     1321 cactacctcg acattattaa gatgcctcat ttttttacaa gagtatatca ttctcaatca
     1381 atttttttaa taaccattgt cacatcaacc attcttcttc ttagttggac aggtatatta
     1441 ttttcatcag catttgctct acaggctcct ggaacacaaa acgaagagga agcattagaa
     1501 acaccaggaa atatcagtag taatatcgat actaaggata cagtattaaa taaaacaggt
     1561 acggatctgc caattttaga gcaattatct gataagggaa attatttaat acaggtgaga
     1621 tgggggcagg atccctctct acttgctgca agtggatttg atatggagat agtatttctt
     1681 aatgcaagcg ggtcagaagc aacggcagaa tcatttccga taaaagagac aaacgtaaca
     1741 ggagattcgt ttgttggttc aggcggttat acagatccat ctattataca aagaatggtg
     1801 ccaattgaaa gttatgacat aagcgtatat tctgataatg gtgaacagtt atggaaaaag
     1861 gcaaaccaac cagtccaagc cggaagagca tatgaaagaa taacatttga aaacccctat
     1921 aaaggcggaa ttactatcca gatcagtaat atcaagactg caggtaacat gggcggaacg
     1981 attggaggtc cattatctgg tccagatgaa aataatccaa ctgatgatag ag
//
LOCUS       DATABJ010000129         3465 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1397139, whole genome shotgun sequence.
ACCESSION   DATABJ010000129 DATABJ010000000
VERSION     DATABJ010000129.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3465)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3465)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3465
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1397139"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(427..657)
                     /locus_tag="VHF44_02100"
     CDS             complement(427..657)
                     /locus_tag="VHF44_02100"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124374.1"
                     /translation="MSEPAVLDWDRIVHKNVRSSDGQDSGNVDAVDADSVVIITGGAR
                     KEYRIPKSQVDGFNGAEVFLKLSFGELEKYRV"
     gene            1120..2925
                     /locus_tag="VHF44_02105"
     CDS             1120..2925
                     /locus_tag="VHF44_02105"
                     /EC_number="3.4.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004222 - metalloendopeptidase activity
                     [Evidence IEA];
                     GO_function: GO:0008270 - zinc ion binding [Evidence IEA];
                     GO_process: GO:0006508 - proteolysis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEX2124375.1"
                     /translation="MTLFIKPKIGSWKLTDLVEDPNKRQFQEFLQSLEARIKQLEDKR
                     KDLNPQISATDFENLLHLIEDISEKVNVASGYAHLRYSADTSSNEAASLVTKMEIMRS
                     NITNRLMFFDLWFKKDIDEENAQRLIDSMPSVYREYLKHKRLLAKYTLTEPEEKIIST
                     LEVTGPNALVKIYDRMTSSFEFVMAVKKGKKIIKKTFPNKEKMLSLVRSPKPEEREAA
                     YKSLLHVYKKNSGVLGEIYQNLVIQWYDEHISMRGFQSPISARNISNNLDDTTVETLL
                     SVCKRNSVVFQDYFKEKAKMLGIKKLQRYHLYAPLSLKNSEQKKFNYGNAVDIVLQTF
                     EDFDPQFREYAERIFKEQHVDSEIRKSKLGGAFCYTVSPKRTPYVLLNYNGKSRDVST
                     MAHEFGHAIHSMSASDKPIVVSHAPLPLAETASVFAEMLLNDNLTKKVTSKEQKILIA
                     EQIDDMYATIMRQAYFTMFEIDAHHAIAEENATIDKVSELYLNNLNNQFGSSVTLSPD
                     FQWEWVYIPHFYHTPFYCYAYSFGNLLVLSLYQQFKTEGESFIPKYFKILSAGGSQKT
                     EELLKESNIDISKAEFWQQGFDLVAKKIQELKDMN"
BASE COUNT         1237 a          550 c          590 g         1088 t
ORIGIN      
        1 aattctacat ttagagtaaa atgatctcca taccaagttt gaatgctata ttcttgtaag
       61 gtcttatacg ctcaaacttt agtgctttac gaagtgttac tataaagaag aaagcagagg
      121 tattaaggaa ataggtatta aggaaatatt agtatggtag atgaaatcaa gtggtatcag
      181 aagcgttctc tatttttaga gaagcatatt cttaccatac tttctgatat taattgttgt
      241 ttatttagtg gtctaattta atttctttat atattccagt atttattgta attaaatgaa
      301 agcaactatt ctcaaagtga gtacaacagt aataatggct atatctattt taatagcggc
      361 tatcggagat acagtttagt cgtatcttat ttagttaaca gtatatactt ccaataggta
      421 tctatattat actctgtact tttctaattc tccaaagcta agtttcaaga atacctctgc
      481 cccattgaat ccatcgactt gggattttgg tatcctgtat tctttacgtg ctcccccagt
      541 tataataact actgagtctg catctactgc gtctacgttt cctgaatcct gtccatcact
      601 tgatcgcaca tttttgtgta cgattctgtc ccaatccagc actgctggtt ctgacataag
      661 tgttataggt atgatgttct atattaattt gtaaaagctg attatgctaa gaggataatt
      721 caaaagaaga aagagaagca cagaactcat aacagagctg acagtgatcg tatttggaca
      781 gagacacaaa caattcagta ggtgttagca caaaagactc ttagtgtcag aagacaacag
      841 gggcatgagc cgtactatta ctagtgaaga gggagaggag aaataaagaa atctctcctc
      901 tttgcacttc tttttctttt gtctctctcg tttataatca attttattta atttatatag
      961 tataaataca cgcatatata acatattttt taattataca gcgttcaagg ctaattcaat
     1021 tctgaataca acataatctc tttttttgta ataatgtctt aaagacgcag tgtaagaaac
     1081 ataaagctcc aattggttat acgttgtagt aaatcctgta tgactctttt tatcaaacct
     1141 aagattggat cctggaaatt gacagatctt gtagaagatc caaacaaaag acaatttcaa
     1201 gaatttctac aatctttaga agcaagaata aaacaacttg aagataagcg caaagatctt
     1261 aatccacaga tttcagcaac agattttgaa aatttacttc atttgattga agatatatca
     1321 gaaaaagtaa atgtagctag cggctatgct catttgagat attctgctga tacctcttca
     1381 aatgaggcag cttctcttgt gacaaaaatg gaaatcatga gatcaaatat taccaatagg
     1441 ttgatgttct ttgatttatg gttcaaaaaa gatattgatg aagaaaatgc ccagcgtttg
     1501 atagactcga tgccttctgt atatcgagaa tatcttaagc ataaacgttt acttgcaaag
     1561 tataccttaa ctgaacccga agagaagatc attagcaccc ttgaagtcac aggaccaaat
     1621 gcacttgtta agatctatga tagaatgaca agtagttttg aatttgtcat ggctgttaaa
     1681 aaaggtaaga agatcattaa aaaaacattt cccaataaag aaaaaatgct ctcccttgta
     1741 cgaagtccaa aacctgagga aagagaagct gcatataaat ccctattgca tgtatataaa
     1801 aaaaatagtg gggtactagg tgaaatatat cagaaccttg taattcaatg gtatgacgaa
     1861 cacatatcca tgcgcggctt tcagtctccg atttcagctc gaaatatatc caataacttg
     1921 gatgatacaa ctgtagagac tcttctttcc gtatgtaaaa gaaactctgt agttttccaa
     1981 gactatttta aagaaaaagc aaagatgctt ggcattaaaa aacttcaaag atatcatctg
     2041 tatgcaccat tatcattaaa aaactctgaa caaaaaaaat ttaactatgg gaatgctgtt
     2101 gatatcgtac tccaaacatt tgaagatttt gatcctcaat tcagggaata cgctgaacga
     2161 atttttaaag aacaacatgt agattccgaa attagaaaaa gtaaactagg aggggctttc
     2221 tgctatactg tatctccaaa aagaactcct tatgtattac taaattacaa tggaaaatcc
     2281 agagatgtct ctacaatggc acatgaattt ggtcatgcaa tacatagcat gtcagcttct
     2341 gacaaaccaa tagtggtatc acatgcgcca cttccattag cagagactgc atcagtattt
     2401 gcagaaatgc tgctaaatga caacttgact aaaaaagtaa caagcaaaga gcagaagata
     2461 ttgattgcag aacaaataga cgatatgtat gctacaataa tgcgtcaggc ttactttact
     2521 atgtttgaaa tagatgcgca tcatgctatt gcagaagaaa atgcgacgat agataaagta
     2581 tcggaattgt atttaaataa tctgaataac cagtttggca gttcagtaac tctgtcccca
     2641 gattttcaat gggaatgggt ttatattcct catttttacc atacgccatt ctattgttat
     2701 gcatattcct ttggaaattt attagtattg tctttgtatc aacaattcaa aacagaagga
     2761 gaatcattta ttcccaaata ttttaaaata ctctcggctg gaggttcaca gaaaactgaa
     2821 gaattactta aagaatctaa tattgatata tcaaaagctg aattctggca acagggcttt
     2881 gatctagttg ccaaaaaaat acaagagtta aaggatatga attgattcat aattatcatc
     2941 ttttaatttc ccaactaaag atggaagtct tcgtcgggat ataaaatatg catgtacgaa
     3001 aggtttaacg tattgcagca gatggcaaaa gatagttcag agtccattgg ttagtactta
     3061 gcctgtctat gcccagtatg ttaagtttat ttttgattaa attatagaat gatggaattg
     3121 atatagaagg tatagaagat ataggataag agatatgatc aacgaattaa gttgatatag
     3181 gattattcaa aatctattag agcacgcaaa ttatacttga atatattaaa agccatttca
     3241 taagaaataa tgataagatt cagataattt acttggactg ttttccaatt tgataaaaaa
     3301 tcacaacagc tactgtatag tctgtctcca aaaaagcatc attgaatctc ataattgact
     3361 aatatgagct gaaaataaat ctacaatagg aaaaagagcc gtctttaaat ttagcgtatc
     3421 tgtgaatcgg acaacaatga cagggtaaat cagaagaacg atata
//
LOCUS       DATABJ010000130         3637 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_91776, whole genome shotgun sequence.
ACCESSION   DATABJ010000130 DATABJ010000000
VERSION     DATABJ010000130.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3637)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3637)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3637
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_91776"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            190..1761
                     /locus_tag="VHF44_02110"
     CDS             190..1761
                     /locus_tag="VHF44_02110"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF014425.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEX2124376.1"
                     /translation="MLILKINHKSIILLAIPLLLSAFTHLWNLDGFPSIYRDEEHYMR
                     KALHVLNGSGPQEGPDDPLSYRAHPYTHPYFGQIFLAGVLGMIGYPDSLNPSTDIKSI
                     ETLYGVPRILIGLLAVVDTFLLYKISQRLYSRNVALIASIFFAVMPLTWILRRIWLEP
                     IQLPFLLLSILLALHLKDSINNNNKKSVILILLSGISLGTAIFTKIPVFAMIPLVGFL
                     IYNNNNKNKNWKYLGLWFIPVVLIPFIWPAYSLAAGQFDQWLDGVFWQAGERGENNGA
                     FRSINTLMNMDPVLIVLTTVGLIYAAIKRDFIIFLWIIPFMIFIFIVGHVSYWHLIPL
                     FPAFCIVAAKLIADLSSKIRNKNIQKIAPYAIISGIGLFGLLTTTMLITMNVASFHYE
                     VEAFLAQHIQDMNYTTNNKITVLASNYWLWLPIYVFDEYHNNDYKNFYAKGQITTDKI
                     LFVAGGNFINDMVRGNRTRENIEELKMLYDKSKILTTIEEKDYSNLYPDRYPYTAISN
                     IDPKSSKRIEIRANY"
     gene            complement(2073..>3637)
                     /locus_tag="VHF44_02115"
     CDS             complement(2073..>3637)
                     /locus_tag="VHF44_02115"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEX2124377.1"
                     /translation="KGHPLAESAKVLTKQTASNIIISGESRGEKNNTANIEYQEQLST
                     ALNLEEKQQSFWYILNPEGELSPMSTYRFKKQEQNLHILANYEIAKKRTAEEVPSHVK
                     LMKKMSIADYEPASDLGNMRFYPKGRLMKSLIEQYVTKKVMEYGGIEVETPIMYDSKH
                     PSMESYFNRFPARQYNIIADNKQLFLRFAACFGQFLMAKDFQISYKHLPLKLYELTRY
                     SFRREKSGELVGLRRLRAFSMPDCHAICRDLNQAKEEFLKRLELSINVINELGLSTKD
                     DIEMAIRFTEDFYNENKDFINTIVARFGKPIMVEMWKDRFFYFTLKWEFNFIDNSDKA
                     AALSTDQIDVENGSRYNIEFVDEDGSRKNPIILHNSPSGAVERIIYALLERAAKISKA
                     GGIASFPLWLSHTQVRIIPVGKQHTELCEKIATELSSKQIRTDIDDREESVGKKIRES
                     ETEWIRYTLVIGDKELQSEKFSVRDRDEKKQRQDVKLEELISEIKSQTNNKPYLPLNL
                     PRNLSNRPQIMV"
BASE COUNT         1127 a          658 c          589 g         1263 t
ORIGIN      
        1 atttgaatct atgaaagcaa tagaaagacg tccatgttaa atctaatatt gttaaagagt
       61 tattgtcatt gttatcatta cagttcatag gcctttataa taggaacaca agaactctcc
      121 tatattgaag gcaattcaaa aataaacata acataatata atactaaaaa agagcctata
      181 cttacagcaa tgctgattct gaagataaat cataaatcta taattttact cgctattcct
      241 cttctattat cagcatttac tcatctatgg aatcttgatg gatttcctag catttatcga
      301 gatgaggaac attacatgcg gaaagctttg catgtattga atggttcagg tcctcaggaa
      361 ggtccagatg atccacttag ttatcgcgct catccatata ctcatccata ttttggtcaa
      421 attttcttag caggtgtatt agggatgata ggttatccgg attcacttaa tccctctact
      481 gatatcaaat caattgaaac actatacggg gttccaagaa tattgattgg actacttgct
      541 gttgtcgata cctttctctt gtataaaata tcacaacgcc tttacagtag gaatgttgca
      601 ctaattgcat caattttttt tgcagtaatg cctctaactt ggattttgag aaggatatgg
      661 ttagaaccta ttcaattgcc ttttcttcta ttgtcaatat tattggcact tcatttaaaa
      721 gattcaataa ataacaataa taagaaaagt gttattttaa ttctattatc aggcatttca
      781 cttggaacag ctatctttac aaaaattcca gtatttgcta tgattccact ggtaggcttc
      841 cttatttata ataataataa taaaaataaa aattggaagt atcttggact atggttcatt
      901 cctgttgttc taataccgtt tatctggcct gcatacagct tagcagcagg tcaattcgat
      961 cagtggttag atggtgtgtt ttggcaagca ggagagagag gagaaaataa tggagcattt
     1021 aggtcaatca atactttgat gaatatggat ccagttttaa tagtattgac tactgtggga
     1081 ttgatttatg cagccataaa gagagatttt attatctttc tttggatcat tccgtttatg
     1141 atctttatat ttatcgtcgg acacgtgtcc tattggcatc tgattccatt attccctgca
     1201 ttctgcattg tagctgctaa attgatagca gatctatcga gcaaaataag aaacaaaaac
     1261 attcagaaaa ttgcacccta tgctataatt tcagggatag gacttttcgg actgctaaca
     1321 actacgatgc tgataacaat gaatgtggct tcctttcact atgaagtaga agcatttctt
     1381 gctcaacata tacaagatat gaattatacg accaataaca aaataactgt gctggctagt
     1441 aactattggc tttggctacc tatatacgta tttgatgagt atcataataa tgattataag
     1501 aatttttacg ccaaaggaca aataacgact gataaaattc tttttgttgc tggtgggaat
     1561 ttcatcaacg atatggttag aggcaatagg actagagaaa acatagagga actaaaaatg
     1621 ctctatgata aatcgaaaat tcttacaaca atagaagaaa aagactacag caatctatat
     1681 cctgacagat atccatatac tgctattagc aatatagatc caaaatcatc aaaaaggatt
     1741 gagattagag ccaattattg aatgaacacg ttggctgtgt ctctataggg taatttgtga
     1801 taccccaatt atcaatgata ctattttgct aaaatatcca tatagccaga gattcaacag
     1861 cacaatcaca cattgtatgt caaacactca tcaaaagaat tattattcat tgatccatat
     1921 tgatgttaat catgttgtga gtactaagat agtatgagaa tatggcgata actagtaaca
     1981 acattgctca ttcatgctgc ttgcggaatt tgatattata cttaccaaac atatttcatt
     2041 attgactttt ctattatcta ggaccatagt ggctaaacca taatttgcgg tctatttgag
     2101 agatttcttg gaagatttaa tgggagatat ggtttattat tagtctggct cttaatttcg
     2161 ctaataagtt cttctaattt aacatcttgg cgttgttttt tttcatctct atctctaact
     2221 gaaaattttt cactctgcaa ttctttatca ccgatcacca aagtataacg aatccattct
     2281 gtctctgatt ctctaatttt ttttccaact gactcctctc tatcatcaat atctgttcta
     2341 atctgtttac ttgaaagctc tgttgctatt ttttcacaaa gctctgtatg ctgcttacca
     2401 actggtatta tacggacttg ggtatgagat agccatagag gaaatgaagc tattccccct
     2461 gcttttgaaa ttttagccgc tctttccagc aatgcgtaga ttattcgttc tactgcaccg
     2521 ctaggtgaat tatgtaatat gattgggttc ttgcgactac catcttcatc gacaaactca
     2581 atattatagc gactgccatt ttccacatct atctgatctg tagatagcgc agcagccttg
     2641 tctgagttat cgatgaaatt aaactcccac tttaatgtga aataaaagaa tcggtctttc
     2701 cacatctcaa ccataatggg ctttccgaaa cgggcgacga tcgtatttat aaaatccttg
     2761 ttttcattgt aaaaatcctc tgtaaatctt attgccatct ctatatcatc tttcgtagaa
     2821 agtcctaatt catttatcac attgatcgat aattctaatc tcttcaaaaa ttcttctttg
     2881 gcttgattta aatctcgaca aatggcatga caatcaggca tactaaaagc tctcaaacgt
     2941 cttagaccga ctaattctcc acttttttcc cttctaaaac tgtacctagt aagttcatac
     3001 agctttaaag gaagatgctt atatgatatc tgaaagtcct ttgccatcaa aaattgacca
     3061 aagcaagcgg cgaatctcaa aaaaagttgt ttattatctg ctattatatt atattgacgg
     3121 gcaggaaacc ggttaaagta actttccata gatggatgtt tagaatcata cattatagga
     3181 gtctcaactt ctatacctcc atattccatt acttttttag ttacgtattg ctcgattagt
     3241 gacttcatta atctaccctt tggatagaac ctcatatttc cgagatcgga ggctggctca
     3301 taatctgcta ttgacatctt tttcattaat ttaacatggg aaggtacttc ctctgctgtc
     3361 cttttcttcg ctatctcata attggcaagg atatgcaggt tttgttcttg ttttttgaat
     3421 ctatatgtac tcataggaga caattcccct tcagggttga gaatatacca aaatgattgc
     3481 tgcttttctt ctaaatttag agcggttgag agttgttctt gatattcaat attagcagta
     3541 ttattcttct cacctctgct ctcaccagaa ataataatat tagaagcagt ttgctttgtt
     3601 aacaccttgg cactttctgc caaagggtgt cccttga
//
LOCUS       DATABJ010000131         2291 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_532994, whole genome shotgun sequence.
ACCESSION   DATABJ010000131 DATABJ010000000
VERSION     DATABJ010000131.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2291)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2291)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2291
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_532994"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..346)
                     /locus_tag="VHF44_02120"
     CDS             complement(<1..346)
                     /locus_tag="VHF44_02120"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124378.1"
                     /translation="MSQSEWFTSYLKYKTLEDMLKVILSSSQSVFSYIPMLYYINYNN
                     QEILFIQTGTIGGVIIHYIVQNEKPNKKIIELKRLTGKFSFIESIGTDAQSIYIPILE
                     LEKSTLRFPSFDS"
     gene            598..1248
                     /locus_tag="VHF44_02125"
     CDS             598..1248
                     /locus_tag="VHF44_02125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0006865 - amino acid transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LysE family transporter"
                     /protein_id="HEX2124379.1"
                     /translation="MDLLGFGAQVVFTSASGVISPGPLFFANLVYGSKQGIYSGIKIA
                     HGHTIVELPLIIILASGLITFSSITTTNLVSKLISLSGGIVILVFSAVQIEALLKKKK
                     GEKKIYFNTHNKKDPLIIGSILSALNPFFILWWLTAGLKLISDSLELYGFAMGIVVVF
                     FFHIWMDYGWLAVTAHLISRGTLIFRSKYYPIILLALNAALIYYGIYFIVTGLIVT"
     gene            complement(1276..1581)
                     /locus_tag="VHF44_02130"
     CDS             complement(1276..1581)
                     /locus_tag="VHF44_02130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEX2124380.1"
                     /translation="MSSNNANTEIKANNEIFIGKKPLMTYVTATLVQLANEPTVIIKA
                     RGKSITRAVDVAQIIVKRMDTLGYKIGPVKIGSELVQSQDGKTRNVSTIEVYISRAK"
     gene            complement(1645..1872)
                     /locus_tag="VHF44_02135"
     CDS             complement(1645..1872)
                     /locus_tag="VHF44_02135"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124381.1"
                     /translation="MEYPVAVQPDGIKLKPERMVIDQLYHCIFDNKVFLFYKDEQELL
                     HCYEVEHPSAVKEISSNPSDIENILMKYSKT"
BASE COUNT          710 a          339 c          389 g          853 t
ORIGIN      
        1 acgagtcaaa tgaaggaaat ctaagagtgg acttttctaa ctctaaaata gggatatata
       61 tggattgagc gtcagtaccg atgctctcaa taaagctaaa tttaccagtt aatcgcttta
      121 actctatgat ttttttattt ggcttttcat tctgcacgat ataatgaatt atcactcctc
      181 ctatcgttcc agtctggatg aaaagtattt cttgattatt ataattgata taataaagca
      241 ttggaatgta gctgaaaact gattgagatg aagagagtat aactttgagc atatcttcta
      301 aggttttgta ctttagatag gaggtaaacc attcgctttg tgacatagta cactaaaatc
      361 ggagtatata tattagaatt ttgttttatc gcagtacccc agtcttttgc tttcttttag
      421 cattctgata catttcctct ttatgatcat aaatcatatc taaatttcat ttaatgataa
      481 ttgctagtta tcttaaaaaa ggcataattt aatttggtca tatgtgtaat atataatata
      541 taatgactat atactatcat agaatttttg tgataagatg gaagatagag caatgatatg
      601 gatcttttag gtttcggcgc acaagttgta tttacatcag catcaggagt catttctcct
      661 ggaccgttat tttttgcaaa tcttgtatat ggaagcaaac aggggattta ttcaggtatt
      721 aaaatagcac atggtcatac aattgttgaa ttgccgttga tcattatatt agcttcaggt
      781 ttgattacat tttcatcaat taccactact aatttggtct ctaaactaat tagtttatct
      841 ggaggaattg taatattagt tttttctgca gttcaaattg aggccttgtt aaaaaagaaa
      901 aaaggagaga aaaagatcta ttttaacacg cataataaaa aagatccttt gattatcgga
      961 agcattctta gtgctttaaa tccttttttt atattatggt ggctcacagc cggtctgaaa
     1021 ttaatctctg attcattaga attgtatggc tttgcaatgg ggattgtagt cgttttcttt
     1081 tttcatattt ggatggatta tggttggcta gcggtaacag cacatttaat ctcaagaggc
     1141 actttgatat ttagatcaaa atattaccct atcatacttt tggcattaaa tgctgctctc
     1201 atttattacg ggatatattt tatagtaact ggattgattg tgacttgatc gtcagaacga
     1261 tatatgaggt aagagtcact tagcccttga aatatagact tctatagtag aaacattgcg
     1321 cgtttttcca tcctgagatt gtaccaattc agaacctatt tttactggac ctatcttgta
     1381 acctaaagta tccattcttt ttactataat ctgtgcaaca tccaccgctc tagttatgct
     1441 ttttcctcta gcctttataa tcacagttgg ctcattagca agctgtacaa gagttgctgt
     1501 aacataggtc attaatggtt ttttaccaat aaaaatttca ttatttgctt tgatttcagt
     1561 atttgcgttg tttgacgaca ttgtgtaaaa atgatgtcta atagtataat ataacgttta
     1621 ttgattgttc tctaatttga tgatttaggt ctttgaatac ttcatcaata tattttcgat
     1681 atctgatgga ttggaggaga tttccttaac agcagatggg tgctcaacct cataacaatg
     1741 aagtaattcc tgctcatctt tatagaatag gaaaacctta ttgtcaaaga tacaatgata
     1801 caactggtct ataaccatcc tttcaggctt taatttgatt ccatcaggtt gaaccgctac
     1861 aggatattcc aattcactat tagattcttt gggtttacag agaaaaaaat ctatcggaaa
     1921 tagacaatgt ggtgttgaat tttaataatt catctattga tcaaatctaa ataacgatca
     1981 gggtatcatt gtattattat ttaataagtg actgactacc ataatgatcg atccttcaag
     2041 gttgaaatca tcaataatag agttgattct tacgttgttt ctaacaggca attctgatgt
     2101 aacaacataa tttttggcta tctagataga atgaaagaac cttcctttgg acaccttgga
     2161 ccgttttggg taaatatatc attaatattt tgttactagg aatagtgttt taacataata
     2221 gatgattcct ggtttgctta attttttaag gtgaggctat tttggaacgg aaatagtatg
     2281 tgttatttac c
//
LOCUS       DATABJ010000132         1529 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_969568, whole genome shotgun sequence.
ACCESSION   DATABJ010000132 DATABJ010000000
VERSION     DATABJ010000132.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1529)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1529)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1529
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_969568"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(335..1336)
                     /locus_tag="VHF44_02140"
     CDS             complement(335..1336)
                     /locus_tag="VHF44_02140"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0070967 - coenzyme F420 binding [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03560 family F420-dependent LLM class
                     oxidoreductase"
                     /protein_id="HEX2124382.1"
                     /translation="MTSKETCKLQFGLTIPQGWRGGDLPLEQENNPVKQYEFSKSIAI
                     AADNLGFDSLYAYDHLIPHYKDEVERNIFECFTILSAIAAITDKIKIGQIVACNSYRN
                     PALLAKMLSTLDVISNGRAELGIGAGWYEQEYIAYGYDFPSNVIRIKQLDESLNIIKA
                     MWTKKRSSFEGNYFKVKDVICNPKPVQDPYPTIMVGGQGEKYMLKVVAKHADRYNLFF
                     GSPQEMKRKISLVKEYCNSIGRNHNEIQYSVVLPCILIESEEKVNKTLIEYKRKDKTI
                     QEYIQYLVGGITVGTPEKIVKGLNEYANIGVSHFVIHFIKLDEKILKEFKSKVITKV"
BASE COUNT          452 a          272 c          213 g          592 t
ORIGIN      
        1 cctgatcgcc attttcatat tgtttaaatg agagatcatg tagttgaccc atctggatca
       61 atccatgatt tagtgttcaa tttaaaaaca tattttcatt gctatctatt agtcaatcct
      121 ttaactatac cagcaaaatt actctgcact cagcagtata agagcctgta taattagtgg
      181 gctcggaggg atgcaaatga aaattcattt gaatcacatt atattcaatt tttttatatt
      241 tgtcctattc tcgaatactc tttatgtaat catttagttg atagttaatc aagctatgaa
      301 ttcataatta agtataaaca atgattatca ttccttatac tttagtaatt acttttgatt
      361 taaattcttt tagaattttc tcatctaatt taatgaaatg aattacaaaa tgactaacac
      421 caatgttagc gtattcgttt aatcctttaa cgatcttttc aggtgttcct actgtaattc
      481 cgccaacaag atattgaata tactcttgaa ttgttttatc ttttctcttg tattctatta
      541 gtgtcttgtt aactttctct tctgattcta ttaatataca tggtagcact actgagtatt
      601 gtatttcatt gtgatttctt ccaatagaat tacaatattc cttcactaaa gaaatttttc
      661 ttttcatttc ttgaggcgaa ccaaagaata ggttatatct gtctgcgtgt tttgctacaa
      721 cttttagcat atacttttct ccttgtcctc ccaccattat tgttggataa ggatcttgaa
      781 ctggtttagg attacaaatc acatctttca ctttgaaata gttgccttca aaagaagatc
      841 ttttctttgt ccacattgct ttgataatat ttaatgattc atctaattgc ttgattcgaa
      901 taacatttga cggaaagtca tagccatatg ctatatattc ttgctcatac catccagcac
      961 ctatccctaa ttctgctcta ccattgctta taacatccaa agttgagagc atctttgcta
     1021 gcaatgcagg attccgataa gagttacatg caactatctg acctattttt atcttgtctg
     1081 taattgctgc tattgcagat aatattgtaa agcattcaaa aatattcctt tccacctcat
     1141 ctttataatg tgggatgagg tgatcgtatg cataaagaga atcaaagcca agattatcag
     1201 ctgctatcgc aatggatttt gagaattcat attgtttaac tggattattt tcttgttcta
     1261 atggaaggtc tccacctcgc catccttgag gtatagttaa tccaaattgc aatttacatg
     1321 tctctttaga tgtcatagtt taatatacta cagctaatga cataacaaat atttgcttag
     1381 atattttcta acctagttat ttgccatact tatcatggta tactaacttg atgcgagact
     1441 tctttcaata ctttcagatt cttcagctgg ttacctatac aaataattcc tatcggttta
     1501 acaaacttgg tagttcaggt attgcagag
//
LOCUS       DATABJ010000133         1547 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2051938, whole genome shotgun sequence.
ACCESSION   DATABJ010000133 DATABJ010000000
VERSION     DATABJ010000133.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1547)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1547)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1547
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2051938"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(8..814)
                     /locus_tag="VHF44_02145"
     CDS             complement(8..814)
                     /locus_tag="VHF44_02145"
                     /inference="COORDINATES: protein motif:HMM:NF012334.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2124383.1"
                     /translation="MKRRRRKFDGKIILITGASSGIGRQAAIDFANNGAMAIILVGRS
                     ESKLTGVAALINSKCETMVYVCDISNKTEVIKLGRDVIHRFGRVDVLVNNAGFGFFGK
                     VQDQSIEQIESVTATNYYGMIYCTKVFLDSMLYNKSGHIVNVASVAASFGVPGLAAYC
                     GSKYAMLGFSESLYHELHGTGVGVTVVSPIAVKTNFFNNESFGGKMPNYVGYALPPKT
                     VSNAIMRAANSPRLEIIVPLFIRVGVWLKQTLPYIINPLVGAAFRRKLRR"
     gene            complement(893..>1547)
                     /locus_tag="VHF44_02150"
     CDS             complement(893..>1547)
                     /locus_tag="VHF44_02150"
                     /inference="COORDINATES: protein motif:HMM:NF015651.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="YbhN family protein"
                     /protein_id="HEX2124384.1"
                     /translation="VIYSAKRNLRLPSFSLKILQKFVAREKAERLINSTNNAITDVCK
                     MSRENFNSRKAVKTFTVGIAITFVAFLFQGLSFMVLADSVGSNVGLFDSLMATSASTA
                     LSTIPITIGGSGLAELGIWAYVSNINAIPEFADVIKDSQLNVIIAWRIASYHIPLVIM
                     WIALMKITVGSKVSVTNPKISSHPFSHSVIPNLADDDSDPSNKNNKTHDEVSEDNKR"
BASE COUNT          468 a          309 c          259 g          511 t
ORIGIN      
        1 cgaaaaatta acgtcgtaat ttccttctaa atgccgctcc aacaagtgga ttgataatat
       61 aaggcaaggt ttgctttagc cagacgccta ctctgataaa taatgggact ataatttcaa
      121 gacgaggaga atttgctgct ctcataattg catttgacac agtttttgga ggaagcgcat
      181 atcctacata gtttggcatt ttgcctccga aagattcgtt attgaagaag ttggttttaa
      241 cggcaattgg acttacaact gttacaccta ctcctgtccc atgtagttca tgatataatg
      301 attctgaaaa acccaacatt gcgtattttg aaccgcaata tgcagccaat cctggcactc
      361 cgaagcttgc cgccacagaa gcaacattta ctatatgtcc agatttattg taaagcatag
      421 aatctagaaa tacttttgta caatatatca tgccatagta gtttgttgct gtaactgact
      481 ctatttgttc aatgctttga tcctgtactt ttccaaaaaa gccaaaacca gcattgttta
      541 cgagcacatc aacacggcca aacctatgga tcacatctct tcctagctta attacttctg
      601 tcttatttga aatatcacat acgtagacca tcgtctcgca ttttgaattt ataagggcgg
      661 caacacctgt cagtttagat tcagagcgtc ccactagaat tattgccata gccccattat
      721 tggcaaaatc aattgcagcc tgccgtccga ttccagatga tgcccccgtt attaagatta
      781 tttttccatc gaattttctt cttcttcttt tgatggtggt agtgtattag tagtagtagg
      841 agtaaccatt actattacta ctttttgtta acatctattt ttcttctact aactatcttt
      901 tattatcctc actaacctca tcatgtgttt tattattttt gttgctagga tcactatcat
      961 catcagctag attaggtatt acactatgac taaatggatg agaagagatc tttggatttg
     1021 taacagagac tttagaacct actgttattt tcatcaatgc aatccacata atcacaagag
     1081 gaatatgata agatgcaatt ctccacgcta ttattacgtt taattgtgaa tctttaataa
     1141 catcggcaaa ctctggaata gcatttatgt tcgatacata agcccaaata cctagttctg
     1201 ccaaccccga tccgcctata gtaattggaa tggttgacaa cgcagtagat gcagatgtag
     1261 ccattaatga gtcaaataag ccaacattag atccaacaga atctgcaaga accataaaag
     1321 atagtccttg aaataaaaat gcaacaaaag ttattgcaat tcctactgtg aatgttttga
     1381 ctgctttcct tgagttgaaa ttttctctac tcattttaca gacatcggtg attgcattat
     1441 tggttgaatt gatcaggcgc tctgcctttt ctctagcaac aaacttttgt aatattttta
     1501 atgagaaaga tggcaaacga aggttgcgtt ttgctgaata gataacc
//
LOCUS       DATABJ010000134         1711 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_537070, whole genome shotgun sequence.
ACCESSION   DATABJ010000134 DATABJ010000000
VERSION     DATABJ010000134.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1711
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_537070"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..227
                     /locus_tag="VHF44_02155"
     CDS             <1..227
                     /locus_tag="VHF44_02155"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124385.1"
                     /translation="LVTKMLNYMREQKKLKRTDMPLFIHPDEILLAYREGKISFSADE
                     IQTQMTIIFQKGSIMYVGFVFGRDYVVLKN"
     gene            complement(427..924)
                     /locus_tag="VHF44_02160"
     CDS             complement(427..924)
                     /locus_tag="VHF44_02160"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX2124386.1"
                     /translation="MADVTTTLFSSSVLSIRKMLVPVDGSSASVKALQYAAHIAELEA
                     SDAEVIVLHVLEDIKQGGAIGLQAKYGNVRLVEGFKRARREAALKWLKQIEEAAKKKG
                     IRLKSEILDGDSKVDIIIDYANEKSVDLIVMGSRGITGFKRLLLGSVTNAVVSNAPCP
                     VMVVR"
     gene            1378..>1711
                     /locus_tag="VHF44_02165"
     CDS             1378..>1711
                     /locus_tag="VHF44_02165"
                     /inference="COORDINATES: protein motif:HMM:NF012686.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124387.1"
                     /translation="MAEINAYGVGIIAFLALSVIVGTLSAKLVKKSSRRYMVAGKSLP
                     LFFVGTMLAAQSIDGNSSLGNASLVYQFGFWAGAAIPIGLAVCLILTGAFYAKRLNKM
                     AMLTLPDFY"
BASE COUNT          505 a          349 c          291 g          566 t
ORIGIN      
        1 aattggtgac aaagatgtta aactatatgc gtgaacagaa aaagctaaaa agaacagata
       61 tgcctctttt tattcaccct gatgaaatcc tactcgctta tagagaagga aaaatttcgt
      121 tttcagcaga cgagattcaa acccaaatga cgattatatt tcaaaaggga tcaataatgt
      181 atgttggctt cgtatttgga agagattatg ttgtacttaa gaactaatca tcctatttag
      241 aaccatatag cagtaagttt ctcctgttat gatggcgata taatcctcta aatattttgg
      301 ttacggtttg ttgtacttgc tatcctgtta catcacacag aagaagatat tcgcatatgg
      361 gcctaaaaat aaattgctca ttatatatta agatttaaaa tctatactgt tgatatgcaa
      421 tttttatcaa cgcactacca taacaggaca aggtgcgtta ctaactactg cattagttac
      481 gctgccaagc aaaagccgtt tgaatcctgt aatacctctt gatcccatga ctatcaagtc
      541 aacactcttt tcatttgcat aatctataat aatgtcgact tttgaatctc cgtctaatat
      601 ctcactcttt aatcgtatcc ccttcttctt tgcagcttct tcaatttgct tcagccactt
      661 taaggcagcc tcccttctgg ctcttttgaa gccttcgaca aggcgtacat ttccatattt
      721 ggcctgcaag cctattgcac caccttgctt tatatcttcc aatacatgta atactatgac
      781 ttcagcatca ctggcttcta actctgctat atgagctgca tattgtagcg ccttcactga
      841 tgcactagaa ccatcaactg gaacaagcat ctttctaatc gataatacag aagaagagaa
      901 taatgttgtt gtgacgtctg ccatgagtaa aatatttttt atgacatata aaaacatggc
      961 actcagtgaa gctgattcaa gacatagttt acaatacctg aatttgatca atgttctgaa
     1021 agggaagagg atatgataaa tgacgagaat tattcaggca gtcttctcgt atcatttaat
     1081 cctccacaag agattaatga tttattttta ttaagctact tttgatcatt tgtattcctt
     1141 catgtttctc aattgcttta tacacgctgc gtatcgatta acccatactt ttagaagtta
     1201 ttacaaacta tgttcataag caactttatc atcatgccag ggcaggtcca taatatcctc
     1261 aaagaagatg tcagtttttc gattccatct tctccagata tcatggaatt ataaatctta
     1321 agtatcaccg ccgaatgctg gcaaatctta aatatttact ctcaatattt aggccaaatg
     1381 gctgaaatta acgcatacgg ggtgggtatc atagcctttt tggcgctttc cgtcatagtt
     1441 gggacgctgt cagcgaaact tgtcaaaaag agtagtagac gatacatggt tgctggcaaa
     1501 agtctgcctt tgttttttgt cggaacaatg cttgccgctc aatccattga cggtaactct
     1561 tccctcggta acgcttcact tgtctatcaa tttggattct gggcaggggc tgcaattcct
     1621 attggccttg ccgtatgctt gatacttact ggagcttttt acgcaaaacg gctgaataaa
     1681 atggccatgc ttaccctacc tgacttttac t
//
LOCUS       DATABJ010000135         1984 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_537475, whole genome shotgun sequence.
ACCESSION   DATABJ010000135 DATABJ010000000
VERSION     DATABJ010000135.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1984)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1984)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1984
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_537475"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(118..738)
                     /locus_tag="VHF44_02170"
     CDS             complement(118..738)
                     /locus_tag="VHF44_02170"
                     /inference="COORDINATES: protein motif:HMM:NF013117.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel domain-containing
                     protein"
                     /protein_id="HEX2124388.1"
                     /translation="MYTNEPDKDTNKTAINSKNRTITKQLAVKRIIILGIILAVGLTL
                     STVFLKPMLPKQYLIFLQVAQVSVIGYFVIEIIGNTFYKLAGEYIQGTAKSIESFIKI
                     AGAIIVIAIIISYLSQDPLVAASISTISGLVVGFAAQNIIGNAIAALYFAITRPFKIG
                     DRITVFGNTGVVYDIGLLYSKLLTDNGDVVLASNSSMVTTMVIVNK"
     gene            1167..1787
                     /locus_tag="VHF44_02175"
     CDS             1167..1787
                     /locus_tag="VHF44_02175"
                     /inference="COORDINATES: protein motif:HMM:NF012630.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M57 family metalloprotease"
                     /protein_id="HEX2124389.1"
                     /translation="MESSKAFQIAYAGDDEEDEEDVSGDDDFEEENSIQICCAWGEKL
                     ADGSLTYKISGSDSDIQQAVRTAIEDWDYNIIGVELEEINKKKKEADIEVTFENDGEE
                     IAGQTINNFNGFGFIDHVEMTISENAFGRDFDTKTIEQIAKHEMGHALGLGHANFEGN
                     LMTELVNDGTGTIDDCEIKSVNEANQWKLIDGSDSAYAPSKYDVEC"
BASE COUNT          653 a          310 c          365 g          656 t
ORIGIN      
        1 atgatgcatt attattagtc aatattcctt ttaagcttga cggaatgttt tttcaatatt
       61 tcttgtttcc aactatttat gtccactgtc atgctaattc caaaggcgat cgcttgtcta
      121 tttattcact attaccattg tagttaccat tgatgaatta gaagcaagta cgacatctcc
      181 gttatccgtc agcagtttac tatacagcag acctatatcg taaaccacgc cagtgtttcc
      241 aaatactgta attctgtcgc ctatcttgaa tggtctggtt attgcaaagt ataatgctgc
      301 tatcgcattc ccaattatat tctgtgctgc aaaacctacc actaatcccg atatggtgct
      361 aattgatgcg gctacaagag gatcctggct aaggtatgaa attatgatcg caatgacaat
      421 gatagctcca gcaatcttta tgaagctctc tatagacttg gctgtacctt gaatatattc
      481 tcctgctaac ttgtagaacg tgttgccgat tatttctata acaaaataac caatgacaga
      541 aacctgggcc acctgtaaga aaatcagata ttgttttggg agcatcggct tcaaaaacac
      601 tgtacttaaa gtcaatccca ctgcaagtat tattcccaga ataataattc tttttacagc
      661 taattgtttt gtgatagttc tgtttttgct attgattgct gttttgttag tatctttatc
      721 tggttcgttg gtatacatag taaactgatt ataatgagta aaattcagat aaaaaacgta
      781 ttggatttga tccgagggac tatattataa tgcttgatat aaccattata acagttcaag
      841 ctcgaactgg gttaaagttg ctttaaatct ataattgtac tctaacaatg ttagatcttt
      901 tcttttcttt ttcatctatg caaacataat agtatatcag atcgataact agaatgcaaa
      961 cacttattca aatactagaa cataattaca tttcgacaaa tctacctaaa ataaatatgc
     1021 ctactagaat ttttcagata ttgttctgta aaaaagaaat gacgtttata taaagaatat
     1081 gtattaacta ttctcaggac actaatttgc tattgtataa aaatatatta gttgcattat
     1141 tggtcacatt atttcttctt attgcgttgg aatcatcaaa agcatttcag atagcatatg
     1201 caggtgatga cgaggaggat gaggaggatg tatctggcga cgatgatttt gaagaagaga
     1261 actcgataca gatatgttgt gcttggggtg aaaaacttgc agacggttcg ctaacataca
     1321 agataagtgg aagtgattca gatatacagc aggcagttcg tactgccata gaagactggg
     1381 attacaatat aattggcgtt gaacttgaag aaataaataa gaaaaaaaag gaggctgata
     1441 tagaagtgac ttttgagaat gatggggagg aaatagctgg gcagacaata aataatttta
     1501 atggatttgg ttttattgat cacgtggaaa tgactatatc agagaatgcc tttggaagag
     1561 attttgatac aaaaacaatt gaacaaatag caaagcatga aatgggacat gcattgggtc
     1621 ttggtcatgc aaacttcgag ggtaacctta tgacagagct cgttaatgat ggtacaggaa
     1681 caattgatga ctgtgagatt aaatctgtta atgaggctaa tcaatggaag cttatagatg
     1741 gctctgattc cgcatacgct cctagtaaat atgacgtaga atgctgagct taaattattt
     1801 tcttcaatag tatggtgttc tttctgtacg agacctagta gccaaaaagt tattagtata
     1861 tatatatgta tatatatata taaacgataa ctaacttgtg ttctttctcc tttagaagta
     1921 gttatattga acctacagat tatgcatctt aacaatttaa agaagtcaga gtaacatact
     1981 ctga
//
LOCUS       DATABJ010000136         4069 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1846892, whole genome shotgun sequence.
ACCESSION   DATABJ010000136 DATABJ010000000
VERSION     DATABJ010000136.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4069)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4069)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4069
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1846892"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            227..317
                     /locus_tag="VHF44_02180"
     tRNA            join(227..265,279..317)
                     /locus_tag="VHF44_02180"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:262..264,aa:Arg,seq:tct)
     gene            418..1116
                     /locus_tag="VHF44_02185"
     CDS             418..1116
                     /locus_tag="VHF44_02185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEX2124390.1"
                     /translation="MTVCIEMVRDSRLRDLIKLARDGATKRNFNQSVELTLVLKEIDV
                     KKGFNLNEVVNLPNKPARKASICVIASGDMGTRARRTEIDRVIEPEELDRLGTNKREA
                     RKVVKAHDFFVSDTAYMATVGRSLGQFLGPKGKMPTPLPYGAPIEAIATRFRGSVRVR
                     AKNQLNVSAKIGDEKMDDDQLATNASAVISAIEKKLPQGEKNIRNTLVKFTMGKPAKL
                     TTLKEEEDPRKKAE"
     gene            1121..2011
                     /locus_tag="VHF44_02190"
     CDS             1121..2011
                     /locus_tag="VHF44_02190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEX2124391.1"
                     /translation="MVSDIKITERKSYPKKKRMMYHELQELPKNYDVIALSKMTKVRA
                     TQLMMIRKKLRNDLKILIIKNKVAQRAFEKVKNVPGLESLSKELEGQCGLIFTQISPF
                     KLNLIFDQNKVFLPAKGGDIASKEISIPAGNTGITPGPVLSEFKEANVPTKIDQGSIW
                     VSRDTVIARKGEVISQKLASLMSKLDIKPIEAGIALNFAIIAGLLLRESDLKINLEQY
                     RNEMSRSFQEALALATEAGYLTSETVIPLLLKTHQKALALASESAYISQDTVALVLHR
                     AQSKAYTLANEAKTRGYEPH"
     gene            complement(2171..2488)
                     /gene="rpl12p"
                     /locus_tag="VHF44_02195"
     CDS             complement(2171..2488)
                     /gene="rpl12p"
                     /locus_tag="VHF44_02195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein P1"
                     /protein_id="HEX2124392.1"
                     /translation="MEYVYAALLLHKLKQNITEDNIANVIKATGVTPDDVRVKALVAA
                     LSEVNIEEALKAAPLASAATVGTVPSAASAPSAAGTTPPEEEKKEEKKEEEALEGLSS
                     LFG"
     gene            complement(2537..3040)
                     /locus_tag="VHF44_02200"
     CDS             complement(2537..3040)
                     /locus_tag="VHF44_02200"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124393.1"
                     /translation="MFGRGRIKPGEYVFVVQSDQNYNKLIIGMVQSANGNKIQVRGSY
                     IRPIGLIERVKRGHAGDRPREVLDNPDPNNCIFMLIDRVETGSFNQEIDQQTSKIIWI
                     NEKRFFVLDGWIRENLPDMFADVLRADTEQERLHARTMLLEKMNSLYEKDLKDHLYAV
                     ARSTKVL"
     gene            3252..3722
                     /locus_tag="VHF44_02205"
     CDS             3252..3722
                     /locus_tag="VHF44_02205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX2124394.1"
                     /translation="MQRFDELDMRILSELTKDASISVPQLSKKLNVNASVLYSRIKRL
                     GKRSLIKKFTVIINEGMLGINVKATVGINRDPKLKEPIHSELLRIPEVRLLSEVTGRF
                     DMIVNVNARTLEELHNIIIERIGKIEGIQNTETFVEMQRTEKEPVYAVQPTLSR"
BASE COUNT         1394 a          716 c          757 g         1202 t
ORIGIN      
        1 ggaacttata tttatttgga tataatatgt atatggtata tccaaataaa tataagttcc
       61 agtagccatt caaagtataa tatactatag atgttaaaga catccagctc aatttcatat
      121 aaattatttt ccaacactaa acattttata aaggataatt caaatttctc ctaaccatgc
      181 tagctgtata gctcataatc cacatagtgg aagagtctct tcaagcgggc tcgtagctca
      241 gcatggatag agcgcctgcc ttctaaattc ctggagagag ccggaagtcg tgggatcgaa
      301 gcccaccggg cccgccattt taaaaccgtc tttaatatta tgttatttgc tatacgattc
      361 agatgaatag atttttcttg tacgttttct aaacgatttt aagtggcttt ctatgcattg
      421 acggtttgta ttgagatggt acgtgatagt agacttagag acctaataaa gctggcgcga
      481 gacggagcga ccaagcgcaa cttcaatcaa tcagttgaat taacactcgt actgaaagaa
      541 atagatgtga aaaaaggttt taatctcaat gaggtagtaa atttaccaaa caagcctgct
      601 cgtaaagcaa gcatctgcgt tattgcttct ggagacatgg gtacacgtgc tcggaggact
      661 gaaattgaca gagtaataga accagaagaa ctagacagat taggcacaaa taagagagaa
      721 gcgcgcaaag tggtaaaagc acatgatttt tttgtctctg acactgcata tatggcaacg
      781 gttggtcgct cattgggaca atttttaggt cccaaaggaa aaatgccaac accactgcca
      841 tatggtgcac cgatagaagc tattgcaact cgttttagag gttccgttcg tgtaagagca
      901 aagaatcagt taaatgtatc tgccaaaatt ggagatgaaa aaatggatga tgaccaacta
      961 gcaacaaatg ctagtgctgt aatatcagcc atcgagaaaa aactaccaca aggagaaaaa
     1021 aatattcgga acacattggt aaagtttact atgggtaagc cagccaaact gacaacatta
     1081 aaagaagagg aagacccgag aaagaaggct gaataatata atggtatctg atattaaaat
     1141 aacagagaga aaaagctatc ccaaaaagaa acgtatgatg taccatgaac ttcaagaact
     1201 tcctaagaac tatgatgtga ttgcactttc aaagatgacc aaagttaggg ccactcagtt
     1261 aatgatgatt cgaaaaaaat taagaaatga cctaaagatt ctgataatta agaataaggt
     1321 tgcacaaaga gcattcgaaa aagtaaagaa tgtacctgga ttagaaagtc taagcaagga
     1381 actggaagga cagtgtggat tgatatttac tcaaataagc ccgttcaaat tgaatctgat
     1441 atttgaccag aataaagtat ttctaccagc caagggagga gacattgcct ctaaggaaat
     1501 atcaattccg gcaggcaata cgggaattac tccaggccca gttctctcag agttcaaaga
     1561 ggcaaacgtt ccaacaaaga tagatcaggg aagtatatgg gtgagcagag acacagtaat
     1621 cgctaggaaa ggtgaggtta tctcacaaaa acttgcatcc ttaatgagca agcttgatat
     1681 taaaccgatt gaagcaggta ttgctcttaa ctttgctatt attgcagggt tgctattaag
     1741 ggaatccgat ctaaaaataa atttggagca ataccgtaat gaaatgtcaa ggtcatttca
     1801 agaagctctt gcattagcaa cagaagcggg atatcttaca tcagaaacag tcataccatt
     1861 gctgctaaaa actcatcaga aggccttagc gctagcttct gaatctgcgt atatttcaca
     1921 ggatactgta gcacttgttc ttcatagggc tcaatctaaa gcctacacat tggcaaacga
     1981 agcaaaaaca aggggatatg aaccccacta aatttagcaa attcgcaaaa agaaggtata
     2041 catcacattt ttgaaacatt ggttgctata aatttttgat agattttttt aaggagaaat
     2101 ttattattgc attattgcat atatataaga attcataaca accagttcta acaaatgaag
     2161 tagtgaaaga ttatccaaag agtgatgaga gtccttccag tgcctcttct tctttcttct
     2221 cttctttctt ctcttcttca ggcggtgttg taccggcagc cgacggtgct gatgctgcag
     2281 aaggtaccgt gccaacagta gcggctgatg caagtggcgc tgcctttagg gcttcttcaa
     2341 tatttacttc acttaaagct gcaactagag cttttaccct aacatcatcc ggagtaactc
     2401 cagtggcctt tataacattc gcaatattat cttctgttat attttgtttt aacttatgca
     2461 ataataaagc agcatatacg tattccatac tcaaaagatt atctaatatt caccataata
     2521 taaaactttc aaatgtctat agtacttttg tacttcttgc tacagcataa agatgatctt
     2581 taagatcttt ttcgtatagt gagttcattt tttccagaag cattgttcgt gcgtgcaaac
     2641 gctcttgctc tgtatctgct cttagcacat ctgcaaacat gtcgggaaga ttttctctta
     2701 tccaaccatc taaaacaaag aaacgttttt cgtttatcca tattatcttg cttgtctgtt
     2761 ggtcaatttc ttgattgaag ctacctgttt caactctgtc tattagcata aagatgcaat
     2821 tgttcggatc agggttatcg agaacttctc taggtctatc tcccgcgtga cctcttttga
     2881 cacgttcaat taagcctata ggacgaatat acgagcccct tacttgaatt ttgtttccgt
     2941 tagcagactg aaccatacca atgataagtt tattgtagtt ctgatcactt tggaccacaa
     3001 aaacatactc acctggcttt attcgacctc tgccaaacat ctgttcataa tcctatcata
     3061 aattatataa tatttgctat atttaacaac gtttagctcc tctactgaag aaataaaatt
     3121 aaagcattga tgaaatagag tacgctgcta atggcttaag ggttcagaaa ttattattat
     3181 ttcttctaat caatgaaaga tttaaaatta catttattaa tctatgccac gaactctaaa
     3241 taggataaaa tttgcaacga ttcgatgaat tagatatgag gatattatct gaactaacta
     3301 aagatgcaag tatttcagta ccgcaactga gtaaaaaatt gaatgtaaat gcatctgttc
     3361 tttatagcag aataaagcgt cttggaaaac gaagtcttat aaagaaattt acagttatca
     3421 tcaatgaagg tatgctcgga attaatgtaa aggcgactgt cggtattaat agagatccca
     3481 aactaaaaga gccaatccat tcggaattat taaggatacc agaagttagg ttattgtcag
     3541 aagtcacagg cagatttgat atgattgtta atgtaaatgc acgaacccta gaggagcttc
     3601 acaatataat aatcgagagg attggtaaaa tcgaaggaat tcagaatacc gaaacttttg
     3661 ttgaaatgca gagaacggag aaggagcctg tttatgcagt tcagccaaca ttgtctagat
     3721 aggaacaact ggtccatagt ctttttagaa tatatgtaat attttattct gttatgctga
     3781 ataaatttag cggctagagt tatattatca agcaatgatc taaatatgat actttagcaa
     3841 tctttctaaa tataaagttt aattatacca tgccatcaat gcaatattaa cattattgta
     3901 gcgtaaactg ataataactt taattcagta ggttcaaata atgcattcaa caatttgaag
     3961 cgaagtcttt tggcatttat gcagcgaaaa attatagaaa tcattcagac attgaaatta
     4021 gctaagaaga caagcaaaga tgactatttc acacaccttc gtctagtac
//
LOCUS       DATABJ010000137         2083 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1849963, whole genome shotgun sequence.
ACCESSION   DATABJ010000137 DATABJ010000000
VERSION     DATABJ010000137.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2083)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2083)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2083
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1849963"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..555)
                     /locus_tag="VHF44_02210"
     CDS             complement(<1..555)
                     /locus_tag="VHF44_02210"
                     /inference="COORDINATES: protein motif:HMM:NF017633.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NFACT family protein"
                     /protein_id="HEX2124395.1"
                     /translation="MELSGIEIRYLVNVAKSKIISGYYVSSINAVTKDSFLFKLHHST
                     EPDIILMVSVRGIWITKLKFKPVEENEQVNTIKAEVERSKIESIDQIGSERIVTIKFR
                     HLDGNLRIMIAEFFGEGNIILCDENMQILSIINSIEVRHRTLKVGLRYTSPPIRGIDV
                     FELSLEQLKTTMKDEIKDLDVLRWM"
     gene            702..971
                     /locus_tag="VHF44_02215"
     CDS             702..971
                     /locus_tag="VHF44_02215"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124396.1"
                     /translation="MRAICGLIAGIITGFMITPHTEQSSAIVTTVLIAIIFYLISYTL
                     AKRIAQNIPKTEKRKLATNGIFPFIFLLMMFMIIIYTGLHQFMAR"
     gene            1000..1584
                     /gene="cbiT"
                     /locus_tag="VHF44_02220"
     CDS             1000..1584
                     /gene="cbiT"
                     /locus_tag="VHF44_02220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046025 - precorrin-6Y
                     C5,15-methyltransferase (decarboxylating) activity
                     [Evidence IEA];
                     GO_process: GO:0046140 - corrin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-6Y C5,15-methyltransferase
                     (decarboxylating) subunit CbiT"
                     /protein_id="HEX2124397.1"
                     /translation="MLWDYVTPGIPDELFDRDDEVPITKEDIRSLVISKLRLKKDSSA
                     IDIGCGSGSITVELCLQTKDGKVYGLDFNQRAVELTKRNLQKFGVKAQIFLANAQDIL
                     PLLPQVDSIIIGGTWGDTKRVIELGIDRLKKGGRIVIDTILIETMYKTINTINEAKLN
                     EVDITQVTISKGRKVSTGTMITSRNPVMIISATK"
     gene            1950..>2083
                     /locus_tag="VHF44_02225"
     CDS             1950..>2083
                     /locus_tag="VHF44_02225"
                     /inference="COORDINATES: protein motif:HMM:NF012799.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX2124398.1"
                     /translation="MKLFCVGCGPGDPELLTIKAVNTIKNAEIIFAPTAREGKPSIAL
                     S"
BASE COUNT          749 a          338 c          343 g          653 t
ORIGIN      
        1 catccatctt aacacatcaa gatcctttat ctcgtctttc attgttgttt ttaactgctc
       61 gagcgaaagc tcaaatacat caattcctct aataggcgga gaggtatatc gtaatccaac
      121 ctttaatgtt ctatgtctta cttcaataga attgataata gatagaatct gcatattctc
      181 gtcacaaaga ataatatttc cttcaccaaa gaattcggca atcattattc tcaaattacc
      241 atccaaatgc cgaaatttta tggtcacaat acgctcgctg ccaatctgat caatggattc
      301 aattttagat ctttcaactt cagctttgat ggtgttaact tgttcatttt cctcgactgg
      361 cttgaacttc aactttgtta tccagatacc tctaacagat accattagaa taatatcagg
      421 ttctgttgag tgatgtaact tgaaaagaaa tgaatctttt gtgacggcat ttatactact
      481 aacataatat cctgatatga ttttggattt agccacattt actagataac gtatctcaat
      541 gccagataat tccataacag ttcaaaagtt tatcacaaat attaatcaaa acaatttgtc
      601 tcctagctct gaggatcaag atcaaccgta aggaattaaa ccaagtggca tttaaatgac
      661 agaaagtagc ctatttggat tcactagata gagtttttta tatgagagca atttgcggat
      721 tgattgccgg tataatcact ggatttatga taacaccgca cacagagcaa tctagtgcga
      781 tagtgacaac agttctgatt gctattattt tttatttaat atcatataca cttgcaaagc
      841 gtattgcaca gaatatccca aagactgaaa aaagaaagtt agcgacaaat ggtatattcc
      901 catttatttt cctattgatg atgttcatga tcatcatata tactggatta caccagttca
      961 tggcacgtta aaatactgct tttttataga tacaatacat tgctttggga ttatgttacg
     1021 ccaggaatcc ccgatgagtt atttgataga gatgatgaag ttccaattac gaaggaagat
     1081 atcagatctt tagtcattag caaattacga ttgaaaaagg attcttctgc gatagatatt
     1141 ggatgtggaa gtggcagtat cactgtagag ctctgtttac agacaaaaga cggcaaagtc
     1201 tatggtcttg attttaatca acgtgcagtt gaactaacta aaaggaatct ccaaaaattt
     1261 ggagttaaag ctcaaatatt cttagcaaat gcgcaggata ttttgccatt acttccacaa
     1321 gtagactcga taattatagg tggaacgtgg ggagacacca agcgagttat agagttgggg
     1381 atagatcgat taaagaaagg tggcagaata gtaattgaca caattttaat tgaaactatg
     1441 tacaagacaa taaatacaat aaatgaagca aaactcaatg aagttgatat tacacaagta
     1501 acaatttcaa agggaagaaa agtctcgaca ggtacaatga ttacttcaag aaacccagta
     1561 atgataattt cggctacaaa atagctataa accagagaaa taaaggattc tccaacgatg
     1621 tgttacaaaa ttaaagaaaa atttccctat caatatagca gatgcaatgt ataattggat
     1681 aaaaattaat ttatataatt aagatatact tttattcatc gatatttctt ataacataca
     1741 ttgatatatt atggatccat aagcaatata atacatccaa gatattatca ttaacacaac
     1801 tgccatcatt taaataataa ttgtgtaata aaaaatagat aattggtaga aattaatata
     1861 tcaacatggg ttcaataatt ttagtaagaa ctgcatataa tcaaagaatt atgatctttt
     1921 aaataacgct cttctttgag aaaatgtaaa tgaaactatt ttgtgtcgga tgtggtccag
     1981 gggatcctga attattgaca atcaaagcag taaatacgat taaaaatgca gaaattattt
     2041 ttgcacctac agcaagggag ggcaaaccta gcatcgcgct ttc
//
LOCUS       DATABJ010000138         3644 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_541611, whole genome shotgun sequence.
ACCESSION   DATABJ010000138 DATABJ010000000
VERSION     DATABJ010000138.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3644)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3644)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3644
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_541611"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            227..997
                     /locus_tag="VHF44_02230"
     CDS             227..997
                     /locus_tag="VHF44_02230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2124399.1"
                     /translation="MISAIFSLVYRNLIASIDKVFLIWQVVFPIVYIFVAGYSYSALL
                     GEEAVRFGNAQIAYPAYLAAGMIGFNVMNSSTVAGSIIWNDKRNGMFQQILVMPFTRM
                     QYIISNLLTIMLMGLASASLIVAAGFPTMLGNANPTLLSIPYTIYALLSGAIFFGSIT
                     IIISTKLKSSEGFNVIVNGIFLFFAFASSAFYPSDGVPEPLRTAFYINPLTYIVDITR
                     AGIFSQISMFTTIEVVVMAALSAGAFLMATLSMMKLKI"
     gene            complement(1023..2000)
                     /locus_tag="VHF44_02235"
     CDS             complement(1023..2000)
                     /locus_tag="VHF44_02235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2124400.1"
                     /translation="MQIAYIILIGDQHCIFVHELWKYYNRDIAAISGISLDVEYGKVF
                     GFLGPNGAGKTTTIKILTTLIRPSSGKVYLFGKDIVKHSAEVRKRIGVVLQQPSFEAN
                     LTVERALDLYGFLWGLASEKRKDKLRELLHAFDLESLRNIKNDELSIGQRRRVQVARE
                     FMHEMDLLFLDEPTVGLDPSARRMLLDYIKRQVKAGLTVFFTTHIMEEAEYLCDEIAI
                     INKGKILAFDTPAGLKQKYGGIKTIEIKLKNIPVRSILHLINRVVDNSHINIPETKTV
                     CIGSINAQEIIVKIMELLSNNGIEIDSIAITPPSLEEVFLTIVNYGREA"
     gene            2093..3532
                     /locus_tag="VHF44_02240"
     CDS             2093..3532
                     /locus_tag="VHF44_02240"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124401.1"
                     /translation="MSADFQKMVEVLLSQKPEISAEQIRDLIDEKKRKIGAGYLTDQG
                     ALFLVAADLGISFENIPKSQSGIKDLYIGAKDVTVTARIMNIYPIRKFTKKDTNEESR
                     NRTLTIYDKESSVKLKLWDNQTRIPDEIGLKPGDLVKISQGYVKSGLDGKPTINLGSN
                     GIIEKLSDGDSPIPNIDTKVITVDEVRESQDNVVIVGKIKSNPRISEFTNIRGQQNKS
                     LQMQISNEDGSRTLRVVIWNVEEERIPKVFNTGARVKFIGVKIKQSNPQYGTGDFEIH
                     GDEGTSLEFFGAQEEIEVMPLRILSIGRESGRGNVNCLAIGKGGKFVSLTVDSTLMNE
                     EITPEVMIECVPSRIFGTSITLSKDESYIRIIDDDPSFPKLAMLESKIKDIQLSDNPF
                     IIEAIVLQVPNMTEVSTKTGEVVPVTDTLIGDDTGEIRLIGWRSQSSSVNQVNVGDRI
                     KVIGATANNGREGKVELTLKPHSSIVKVG"
BASE COUNT         1154 a          634 c          685 g         1171 t
ORIGIN      
        1 agtctgttat caattatgat tggttgatat caagccttaa ttactaatta agaatctaat
       61 cacggaggtg tcacgactat taagtataag taaaattagg cctgatagtc tcttatgagg
      121 acgacttgtc ctgtttatgt atatatatat atatattttt atatatatat attattgatg
      181 agtttatttt atattaaaat acaactggct ggtacatatg catcagttga tatcagcaat
      241 tttttccttg gtatatagga atcttatcgc ttcgatcgat aaagtatttc taatatggca
      301 agttgttttt cctattgtat acatatttgt agcaggttat tcctattctg cgttactagg
      361 agaggaggct gtcagattcg gcaatgctca gatcgcatat cctgcatatt tagcagcagg
      421 tatgattggt tttaatgtta tgaacagcag cacagtagct ggcagcataa tttggaatga
      481 taaacgaaac ggaatgttcc aacaaatatt ggttatgcca tttactcgaa tgcaatatat
      541 cattagtaat cttctcacca taatgctaat gggccttgct agtgcctcgc tcatcgtggc
      601 agctggtttt ccaactatgc tcggcaatgc aaatcctaca ctattgtcta taccttatac
      661 aatatatgcg ctcctttctg gagcaatatt tttcggttca attacgatta ttatttctac
      721 caaactcaaa agtagtgaag gattcaatgt gattgttaat ggtatatttc ttttctttgc
      781 atttgctagc tcggcttttt atccatcaga cggagtaccc gaaccattac gcactgcgtt
      841 ttatatcaac ccattgacat acatagtgga tattacaagg gcaggtatct tttcacagat
      901 tagtatgttt accactattg aagttgttgt aatggcagct ctttccgcag gagcatttct
      961 gatggccacc ttatcgatga tgaaactgaa aatctaaagt ctagtctgcc tggcatatac
     1021 cgctatgctt ctcttccgta atttactata gttaggaata cctcttctag agatggagga
     1081 gttatagcta tactgtcgat ctctatgcca ttgtttgaaa gtaattccat tattttaact
     1141 ataatttcct gggcattaat tgagcctata caaacagttt ttgtttcggg aatattaata
     1201 tgcgaattat caacaaccct atttatcaaa tgtaaaatcg atctgacagg aatatttttt
     1261 aacttgattt caatagtctt aatacctccg tacttctgtt ttaacccagc cggtgtatca
     1321 aaggcaagta tcttaccttt gtttattata gcaatttcgt cgcaaagata ctctgcttct
     1381 tccatgatat gtgtagtaaa gaaaacagtt aggccagctt ttacttgcct ttttatatag
     1441 tctaatagca ttcttcgagc agacgggtcc aagcctacag ttggctcgtc aagaaaaagc
     1501 aagtccattt catgcataaa ttcacgcgcg acttgcactc ttctcctttg accaattgaa
     1561 agttcatcat tctttatatt tctgagactc tctaaatcaa aggcatgtaa aagttctctc
     1621 aatttatcct ttcgtttttc gcttgcaagt ccccacaaaa aaccgtaaag gtcgagagct
     1681 cgttctaccg tcaagtttgc ctcaaagcta ggttgttgca agacaactcc aattcgtttt
     1741 cgaacttctg ctgaatgttt cactatgtct ttaccaaaga gatatacttt tcccgatgat
     1801 ggacgaataa gggttgtcaa tatttttatt gtagtagtct tacccgcacc atttggacca
     1861 agaaagccaa acaccttccc atattctaca tcaagagaaa ttccacttat agcagctata
     1921 tctctattgt aatatttcca aagttcatgc acaaaaatgc aatgctgatc tccaatcaaa
     1981 attatgtatg ctatttgcat gtctaatttt tgtgtttatt attaatgatt attgtcaaaa
     2041 catataggca agttatttat tgatagtaat aataaggagg ggtttgctcg ctttgtctgc
     2101 tgattttcaa aagatggttg aagtattgct gagtcagaaa ccagaaatca gcgctgaaca
     2161 gattagagat ttgatcgatg aaaagaagcg taagattggc gctggttatc taacagatca
     2221 aggagcctta ttcctggttg ctgctgattt aggtatttct tttgaaaaca ttccgaaatc
     2281 acaatctggc attaaggacc tttacattgg tgcaaaagat gtcactgtta cagcgagaat
     2341 aatgaatatt tatcctattc gtaagtttac gaaaaaggat acaaatgaag aatccagaaa
     2401 tcgaacctta actatctatg acaaggaatc aagtgtgaaa ctaaaactat gggacaatca
     2461 aactaggata cctgatgaga taggcttaaa accaggggac cttgtaaaga tttcccaagg
     2521 ctatgtcaaa tcaggcctcg atgggaaacc aacaattaat ctaggttcta atggtattat
     2581 cgaaaagtta agtgatggcg atagccctat tccgaatatt gataccaaag tgattacagt
     2641 tgatgaggta agagaatctc aggataatgt tgtgatcgtt ggtaagatta aatcaaatcc
     2701 gagaatctca gaatttacca acatccgagg tcaacaaaat aagtcacttc aaatgcagat
     2761 ctctaatgaa gacggttctc gtacattacg cgttgttata tggaatgttg aagaagaacg
     2821 gattccaaag gtgtttaata ctggtgcgag agttaaattc attggagtaa aaataaaaca
     2881 aagtaatcca caatatggaa caggcgattt tgaaattcat ggtgacgaag gaacatcact
     2941 agaatttttt ggagcacaag aggaaattga agttatgcct ctgcggatac tatcaatagg
     3001 aagagagagc gggagaggta acgtcaactg cctagcaata ggtaaaggtg gtaaattcgt
     3061 atctctaact gttgatagta ccctgatgaa tgaagaaatt actcctgaag tgatgattga
     3121 atgtgttcct agtagaatct ttggaacgag cattaccctt tctaaagatg agtcctatat
     3181 tagaataatt gatgatgacc catcttttcc aaaactagcg atgctagagt caaagataaa
     3241 agacattcaa ttatctgata atccatttat catagaagct attgttttgc aagtacctaa
     3301 tatgactgag gttagtacta agaccggtga agttgttcca gtgactgata cattaatagg
     3361 tgatgacaca ggcgagatac gattaatagg ttggcgatct caaagctctt ccgttaatca
     3421 ggtaaacgta ggtgatagga ttaaagtaat tggtgccaca gcaaataatg gaagagaagg
     3481 aaaagtagaa ctcacactaa agccacattc ttccattgta aaggtgggtt aaaacgatat
     3541 agtaatatta tttttcatat ctgtaatcaa ttagagtgct gtttgagcaa ttcagaaaca
     3601 ggctcatatt tagaaactag gttaaacaat accaaactct tgcc
//
LOCUS       DATABJ010000139         4786 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_326900, whole genome shotgun sequence.
ACCESSION   DATABJ010000139 DATABJ010000000
VERSION     DATABJ010000139.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4786)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4786)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4786
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_326900"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(123..2774)
                     /gene="ppdK"
                     /locus_tag="VHF44_02245"
     CDS             complement(123..2774)
                     /gene="ppdK"
                     /locus_tag="VHF44_02245"
                     /EC_number="2.7.9.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050242 - pyruvate, phosphate dikinase
                     activity [Evidence IEA];
                     GO_process: GO:0015976 - carbon utilization [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, phosphate dikinase"
                     /protein_id="HEX2124402.1"
                     /translation="MTSTRMLKPIYFFDEADSKNKTLIGSKGAGLAEMTQLGLPIPPG
                     FIITTEICAKFYEGGKRLPDGFMYEVRKAMKKLEILSKKQFGDISNRLLVSVRSGAPV
                     SMPGMMDTILNLGINDDTVQGLAKQSKDSRFAWDTYRRFIQMFGKIVLNVEEKIFDEI
                     SIGAENADEDHLRKMTLASKMFCENKMGKKFPEDPYKQLELAIIAVFKSWMGKRATEY
                     RRQYKISPEMANGTAVIILEMVFGNMSHDSATGVLFTRNPESGEKKLYGEYLVNAQGE
                     DVVSGKATPKPINLLSSELPNVDKELRIAAESLEKHFREAQDVEFTVEKGNLYIQQTR
                     TAKMNALATVKTSVDMFHEGLINRTSALARINPEELEQILYPIINDKSNYVPLARGIG
                     ASPGAVSGIVVLNEARAESLGTKGEKVILVKEYTKPEDVPAIFKSAGIVTSRGGKTSH
                     AAVVARGMGKPCIVGCSQIEIDERASRFTIDRKCSIHEMHKITIDGTSGDIYAGEVPT
                     VKPEITSELKELLQWACDEKIIKIRANSDVPESAVLARKYGAEGIGLCRTERMFNQHD
                     RIAQFVTMIMADGQEERRHVLAELEPLQRSDFKTILKEMEGLPVTIRLLDPPLHEFLP
                     KEEDLLNQIFELRSQLQCDNLEILNKEKLLKRVHELSEINPMLGHRGVRVGLSFPEIY
                     EIQIRAICEAAAELSKEGIHVQPQIMVPQVGMLEEFAQVRLIFESIKSEIEYRSKTKL
                     KIKFGSMIEVVRACLIADDIAKLADFLSFGTNDLTQGTFSFSREDAESKFLPLYLDKG
                     LVSMNPFQTIDRRGVGKLMKIAIDLAKGVKRDIEIGICGEHGGDPRSIEFFTEIGLDY
                     VSASSHRIPIAILAAAQSAINRDDKRA"
     gene            3089..4150
                     /locus_tag="VHF44_02250"
     CDS             3089..4150
                     /locus_tag="VHF44_02250"
                     /inference="COORDINATES: protein motif:HMM:NF012335.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEX2124403.1"
                     /translation="MLLSQRMLAAVFHSPNVITLEERQLSKTENNILIRVTACAVCGY
                     DARVFRNGHHKVRTPVILGHELCGELLQTVPAHNGKVIESGTRVIVSPIISCLNCKYC
                     KSEQYNLCTNLREIGSTVDGGFAQYISIPKQILQIGGIIPVPGSLSNEEAALVEPLAC
                     CINGFYQMGRINSESQVAIIGDGPIGLLHLQLSKLYGAKTIMIGKNEERIRKAKSIGA
                     DQVVFAHDLKGTRDNILQHTNGLGTNAVIVATSNPAALNLAMAIASKNSKINIFGGMP
                     KETHISLDPNWLHYNQISLIGSFSSTPYMLQEAARLAANKHIDLGKIISHRFSLDRIE
                     EAIEVTEQYYGLRAVINSF"
     gene            complement(4292..>4786)
                     /locus_tag="VHF44_02255"
     CDS             complement(4292..>4786)
                     /locus_tag="VHF44_02255"
                     /EC_number="3.1.21.-"
                     /inference="COORDINATES: protein motif:HMM:NF016362.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004519 - endonuclease activity [Evidence
                     IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="restriction endonuclease"
                     /protein_id="HEX2124404.1"
                     /translation="ASGSKILFSKEDRLKIAILALKMGCDIEQISIRLDWKDFEALTS
                     KILRLSGYKTAVHVFFSKPRMEIDVVGTNSKFAIAVDCKHWNNSSLSTLSSYVKKQIE
                     RTKILLAKRSNIFSAIPIILTLHYNKVRFIEGTPVVPITEFKSFLNGLEDNLSGVYVL
                     YSKN"
BASE COUNT         1417 a          942 c          789 g         1638 t
ORIGIN      
        1 gcatctttct gtactaaagt tattttatta gaatatcttt ttttgtcaac attctataat
       61 tcaactatat tgttatagag tatatctaaa catcattgaa agatgggaga ttatttgtat
      121 aactaggctc ttttgtcatc gcgattaatc gccgattgtg ccgccgctag aatagctatt
      181 ggaattctgt gcgaagatgc gcttacataa tcgaggccaa tttcggtaaa gaattcgatt
      241 gaacgggggt cgcctccatg ttcgccacat attcctattt caatatctct tttaacccct
      301 tttgcaagat cgattgctat tttcattaat ttgcctaccc ctcgacggtc aatagtctga
      361 aacggattca tgctaacaag acccttgtct aaataaagtg gaaggaattt gctttcagca
      421 tcttctctgc taaaactaaa tgttccttga gtaagatcat ttgtaccaaa actcaggaaa
      481 tctgcaagct tagcgatatc atcggctatc aagcacgcac gaactacttc tatcatactt
      541 ccaaacttaa ttttcaattt tgtcttactt ctatattcaa tctcactctt gatcgactcg
      601 aagataagcc tgacttgagc aaactcttcg agcattccga cctgaggaac cataatttga
      661 ggctgtacat gaatcccttc tttggacaat tctgccgctg cttcgcaaat ggctcttatc
      721 tggatctcat aaatttcggg aaatgacaaa cctactctaa ctcccctatg tcctagcatg
      781 ggatttattt ctgataattc atggaccctt ttgagaagtt tttctttatt taggatttca
      841 agattatcac attgtagttg tgagcgaagt tcaaagattt gattaagcaa atcttcttct
      901 tttggtagaa attcatgaag cggaggatcc aataatctaa tggtaacagg aagcccttcc
      961 atttctttta aaatagtctt aaaatcggat ctctgaagtg gttctagctc tgccaaaaca
     1021 tgtctccttt cttcttggcc atctgccata atcattgtta caaattgagc aattcgatca
     1081 tgttgattga acattctctc tgtacggcaa agaccgatac cctctgcacc atatttcctt
     1141 gctaacacag cactttccgg cacatctgag ttagccctaa tctttataat cttctcatca
     1201 caagcccatt gaagtaattc ttttagttct gatgtaatct ctggtttgac ggtggggacc
     1261 tcaccagcat aaatgtcgcc actagttcca tctatagtga tcttatgcat ttcatgtatt
     1321 gaacattttc tatctatagt gaatcttgaa gctctttcat caatttcaat ttgagagcaa
     1381 cctactatac acggcttacc cattccacgt gctacaacgg ctgcatgtga agtttttccg
     1441 cctctacttg taacaatacc agcagattta aaaatggctg gaacatcttc tggttttgta
     1501 tattctttga ctaaaattac tttctcgcct ttggttccca aagattctgc tcttgcttca
     1561 tttaacacaa caatgccact gacagcgcca ggtgaagctc caattcctct ggctagtggg
     1621 acatagttag atttatcatt aattatcgga tatagaatct gctctaattc ttctggatta
     1681 attcttgcca aagcactagt cctattaatc agtccttcat gaaacatatc gacagaggtt
     1741 tttacagttg ctaatgcatt catttttgca gtccgtgtct gctggatgta taaatttcct
     1801 ttttcaactg taaattctac gtcctgtgcc tctctgaagt gtttctctaa actttcggct
     1861 gctatgcgca actctttgtc aacgtttggt aattctgaag aaagtaaatt tattggcttt
     1921 ggagtagcct tacctgagac cacatcttcg ccctgagcat tcacaagata ttctccgtat
     1981 aatttttttt caccactctc tggatttcta gtgaataaga ctcctgttgc actatcatga
     2041 ctcatattac caaaaaccat ctcgaggatt attactgcag ttccattagc catttcgggt
     2101 gaaattttgt attgacgtcg gtattccgtt gccctcttgc ccatccaaga tttaaaaact
     2161 gcaattattg caagttctaa ctgtttatag ggatcctcag gaaatttttt tcccatcttg
     2221 ttttcacaaa acatcttaga cgctagcgtc atcttcctga gatgatcttc atcagcgttt
     2281 tctgctccta tggagatttc gtcgaatatc ttttcttcga cgttaagaac tatttttcca
     2341 aacatttgta tgaatctacg atatgtgtcc catgcaaatc tagaatcctt gctttgcttt
     2401 gctaaaccct ggactgtatc atcatttatt ccaagattca gaatagtgtc catcattcca
     2461 ggcatagaga caggcgcacc tgaacgaaca gaaaccaaca gtcgattaga tatgtcacca
     2521 aattgttttt tacttaatat ttcaagtttt ttcattgctt ttcgtacttc atacataaat
     2581 ccatcaggta accttttgcc tccttcataa aattttgcac aaatttcagt agtaataata
     2641 aaaccaggtg gtataggcag accaagttgt gtcatctctg ctaatccagc acccttactt
     2701 cctatcagtg ttttattttt actgtctgct tcatcaaaaa aatatattgg ttttaacatt
     2761 cgagtcgatg tcactatcaa aattatgatc ttttaatttt atatattctg cgaattttaa
     2821 ccgtcatcta ttaggttttg ttgaatgtct tgacatatca tgtccttttt ccatatcaca
     2881 attttatcta gtaaattgga ctgttgcgat aatttgatca ttttactaaa tgttatctga
     2941 attctattat aataattcaa ggattattat tatagttaat gtagcggaag aagagagaat
     3001 attcttaata attttctatt ataataataa cgtctagctg ctcctaatta atatatatgg
     3061 taaatagcga tacatcttaa ttaaatactt gttattgtca cagaggatgc ttgccgcagt
     3121 gtttcatagt ccgaatgtca taaccctaga agagagacag ctttcgaaaa ctgaaaataa
     3181 catcttgata cgagtcactg cctgcgccgt ctgtggttat gacgccagag tttttagaaa
     3241 tggacatcat aaggtaagga caccggttat attaggacat gagctttgcg gagaacttct
     3301 tcaaacagta cctgcacata atggaaaggt aattgagtca ggtacgagag ttattgtctc
     3361 tcctataata tcctgcttaa attgcaaata ctgtaaaagt gagcaataca acttatgtac
     3421 aaatttaaga gagataggat ctactgttga tggtggcttt gcccagtaca tcagcatacc
     3481 taaacaaatt cttcaaatag gaggtattat accagttcca ggtagcctta gtaacgaaga
     3541 agccgctttg gttgaaccat tagcatgttg tataaatggt ttttatcaaa tgggcagaat
     3601 taattccgaa agccaagtgg ctataattgg agatggtcca attggattac ttcatctcca
     3661 gctttcaaag ctatatggcg caaaaactat tatgattggt aaaaatgagg aaagaatacg
     3721 caaagcgaag tctattggag cagaccaagt agtatttgct catgacctta aaggaaccag
     3781 agacaatata ttacaacata caaacggtct cggaaccaat gcagtgatag tggccacaag
     3841 taatccagcc gctttaaact tagcaatggc tattgcgagc aagaattcaa aaataaatat
     3901 ttttggagga atgccaaaag aaacacatat ctcactagat cctaactggc ttcattataa
     3961 tcagatttct ttaattggaa gctttagttc tacaccgtat atgttacagg aagctgctag
     4021 acttgcagct aataagcata tcgatcttgg taagataatt agtcatagat tttcacttga
     4081 ccgtatagaa gaagcaatag aagttactga acaatattat ggcttacgag cagtaataaa
     4141 cagtttttaa attaaactat atgtaggata tttctttctc tctagctgtc attggattat
     4201 tattttcata attccatctt gtaatggact ttgttattaa ctacacaatg tttgtcattt
     4261 atgtagaatt gaagccaata gtatcagtta tctaattttt actatacaat acataaacgc
     4321 ccgataaatt gtcctctagt ccatttaaaa aagatttgaa ttcagttatg ggcacgaccg
     4381 gtgtaccctc tatgaatcta actttgttat aatgaagagt caatattata ggtattgcag
     4441 agaaaatatt acttcttttt gcaagtaata tttttgtcct ttctatttgt ttttttacat
     4501 acgaagaaag agttgatagg ctactattgt tccagtgttt gcaatctact gcaatagcaa
     4561 actttgaatt agttccaact acatcaatct ccatccgagg tttcgaaaaa aatacatgaa
     4621 ctgccgtttt gtaacctgat aatctaagaa ttttcgacgt cagagcttca aaatccttcc
     4681 aatctaatcg tattgagatc tgttctatat cacagcccat cttaagggct aaaattgcaa
     4741 tttttaatct atcctcttta gaaaacagta ttttacttcc cgatgc
//
LOCUS       DATABJ010000140         6101 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1629613, whole genome shotgun sequence.
ACCESSION   DATABJ010000140 DATABJ010000000
VERSION     DATABJ010000140.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6101)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6101)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6101
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1629613"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            389..2761
                     /locus_tag="VHF44_02260"
     CDS             389..2761
                     /locus_tag="VHF44_02260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX2124405.1"
                     /translation="MEQEKIIRSEPEVRSLITKNNANNNDLIKKILYSDKDYVVDFKI
                     LEQADIELGSKVSELPIDESLIAALSENNIEKVYRFQEEAIRKILLGKDIIIIAPTAS
                     GKTEAFSIPVLQKISEDISHFGSLRPSLKKNKISAIFVYPTKSLSRDQLPKIKGLAES
                     VGLHVDLLDGDTSKNERESILLSPPDVIITNFDVIHYHLMHRTRFSHLIRNAKYLIVD
                     EAHVYTGVFGANVHFIIKRLERLSPNKKIQLIAASATLPNAASFCQVLFDRKMEIVEG
                     KGRKGKINFIILFPSLRSHRSLTIDLLKYTTRLNHKTIAFNNSHLGSELLAFYASKQG
                     VRIMVHRAGILPTIRRFVENSFKRGELHAISATPTLELGIDIGDVDAIISNIVPINRL
                     IQRLGRAARRGQQGYAFLALGNDPISQYYKFHPADYFADEEHAYTDPSNPIVEEYQVL
                     AMICDRPLSMVESHDEWNTIQRLISKNLVKVVNEKFMPDYKKAIEVLHNYNIRGIGSN
                     VDIIFNNKIVGERSLPQALEELHVNAIYFLSGRRYQVKKLHCKKESRQQYYAELIQIP
                     NDYPYYTKAIVDEWPSVIQIYDKKKVFGIEVKYCSLKILKRILGYSNIEIGQEATQGK
                     RVMLENPLEFEFITKGFLFRAPRPLNNIVKATTDEQYIEMSGYHASEHVIIEGSGMIT
                     GGAPQDLAGISLGSSGYIYVYDGSIGGNGASKVIYNRLDSVISKALRILSECPCKSES
                     GCPRCTYSYRCGNNNEYLHKDAAIEILNRVVEGDRTEIDDENANLDRALV"
     gene            3983..5752
                     /locus_tag="VHF44_02265"
     CDS             3983..5752
                     /locus_tag="VHF44_02265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase I"
                     /protein_id="HEX2124406.1"
                     /translation="MESSSVSATTNTSIMANVKWTTLEHKGVAFPPEYQSRGIGIIIR
                     GERFILNQDQEELIYAWAKKKNTHYIQDPIFQSNFLIDLRALLPEKFRSIDFINDIDF
                     SEAFRLVDHENAMKEAEIQRIKSLPKDEKKKISLQKKEERERLKAIYGKAIVDGVEVE
                     IANWLVEPPGLFMGRGQHPLRGKWKPRVRAQDVILNLGENAPVPEGAWKDIVHDHSST
                     WLATWIEKITGKRKYVWLHDSAVLRQSNDKEKYDKAKNLEKYIGKVQKQIIRIMLNSN
                     NINQKKIATVCYLIFKLAMRVGDEKDPDEADTVGASTLRVEHIKFPEKNGKQFIEFNF
                     LGKDSVPWQKTLEVNSQDTRGLYNNLKLFMNGKEHNSPIFDKITSSKVNMFLRSIDPK
                     NVPGLTAKVFRTYIATKTVKEELSDPKIRIDKNSPEVEKIYVMKMANLKTAITCNHKK
                     GIDPKNPASRKALEKFEEALRNKEESIKRIRSDIAAKKWKTEIQKKRLEDRLVKLQMQ
                     LKLQKETRDYNLGTSLRNYIDPRVMRAWLNYVQLDWRKIYTTTLQRKFKWVDDYSNSK
                     LKEFYPIREETPLQEMKIVHNES"
BASE COUNT         2182 a          973 c         1088 g         1858 t
ORIGIN      
        1 gatgacaatt tttcatctta gaaagcagat ggatatatat taataatgaa cgtttccagt
       61 aatctttcaa ccattgtagt aaaagcgttt gcaaaggcag cattataaaa ttctaaaaat
      121 tctcaggaat ggtttgacca aatatcccaa acattttatt ttacatgata tcaaaaagtg
      181 tatgtcccat tttcgctgtc ccaattgcgg atcactcaag tctatccaga tggacaaaat
      241 atttgatggt aggttttttt tcagatgctc aaaatgcaat atatgcagca tactcccgtt
      301 aaataataat ctagaggaaa catacctgga ctttttagat ttgtatgata gaagatgcgt
      361 aacgactaca gagaatttaa gatcatttat ggagcaagaa aaaatcatca gatctgaacc
      421 ggaagttaga tctttaatta caaagaataa tgctaataat aatgatctta ttaaaaaaat
      481 actatattct gataaagact acgttgtaga ttttaaaatc cttgaacagg cagatataga
      541 acttggaagt aaagtttcag aacttccaat tgacgagtct ctaatagccg ctttgtctga
      601 gaataatatc gaaaaagtat acagattcca agaagaagcc attagaaaaa tcttgcttgg
      661 aaaagatata attattatcg ccccaacggc atctggtaag accgaggctt tctctatacc
      721 ggtattacag aaaatttctg aagatatttc tcatttcgga tccctgcggc cgagtttaaa
      781 aaaaaataag atctctgcaa tatttgtata tcctacaaaa tccctttcaa gagatcaatt
      841 accaaaaata aaaggccttg cagaatcagt tggactacat gttgaccttc ttgatggcga
      901 tacgtcgaag aatgaaagag aatccatact gttatctcct ccagatgtca tcattacaaa
      961 ttttgacgtt attcattatc atttaatgca tagaactaga ttttcgcact taatacgtaa
     1021 tgcaaaatac ctgattgttg acgaagctca tgtttataca ggtgtttttg gtgcaaacgt
     1081 tcacttcata atcaaaagat tagaaaggct ctcacctaat aaaaaaatac aactgatcgc
     1141 tgcttcagcc acgcttccaa atgcggccag tttctgccaa gtattatttg atagaaaaat
     1201 ggagatcgtg gagggaaagg gcagaaaggg aaaaataaat tttataatct tatttccatc
     1261 cttacgatct catagatctc taacaataga cttattgaag tatacaacca gactaaatca
     1321 taaaactata gcttttaaca attctcatct aggctctgag ctattggcat tttatgcatc
     1381 caaacaggga gtaagaataa tggtccatcg agctggaatc ttgccaacaa ttagaagatt
     1441 tgttgagaat tcatttaaac gaggagaatt acatgctatt tctgcaactc caacgttgga
     1501 acttggcata gacattggtg atgtagatgc gatcatatca aatattgttc ccattaatag
     1561 acttatacaa agacttggta gagcagcgag aagaggacaa caaggatatg ccttcctagc
     1621 gcttggcaat gaccctataa gtcaatatta taaatttcat ccagccgatt attttgctga
     1681 cgaagaacat gcatatactg atccttcaaa ccctattgta gaagaatacc aggtccttgc
     1741 gatgatttgt gataggcctc tatccatggt tgaatcacat gatgaatgga atacaattca
     1801 aagactaatt tcaaaaaatc tggttaaagt agttaatgag aaatttatgc cagactacaa
     1861 gaaagcgatt gaagtattac acaactacaa tatacgcgga atagggagca atgttgacat
     1921 aatttttaat aataaaatag ttggagaacg ttcgcttcct caggctcttg aggaacttca
     1981 tgtaaatgct atttattttt tatctggaag aagataccaa gtcaaaaagt tgcattgcaa
     2041 aaaagagagt agacaacagt attacgctga acttatccag atcccaaatg actatccata
     2101 ttatactaaa gcaattgttg acgaatggcc gagtgtcata caaatttatg ataagaagaa
     2161 agtatttgga atagaggtta aatattgttc tctaaaaatc cttaagagaa ttttgggcta
     2221 ttcaaatata gaaattggac aagaagcaac acaaggcaag agagtaatgc ttgaaaatcc
     2281 tctagagttt gaattcatta caaaaggctt tctgtttaga gctcctagac cactcaataa
     2341 tatagttaag gctactactg atgaacaata catagaaatg agtggttatc atgcatcaga
     2401 acatgtcata atagaaggaa gcggcatgat aactggagga gcaccgcaag atttggctgg
     2461 aatatcgcta ggatcttctg gttacatata tgtctatgat ggcagtattg gaggaaacgg
     2521 cgctagtaaa gtgatctata atagacttga ttctgtgata tcaaaggcat tacgaattct
     2581 gtctgaatgt ccatgtaaaa gcgaaagcgg atgtcctcgc tgtacatact catacagatg
     2641 tggaaataat aatgagtatt tgcataaaga tgctgcaata gaaattttga atagagtagt
     2701 cgagggagac agaacagaga tagatgacga gaatgctaat cttgatcgtg ctttagttta
     2761 aatgtttctg agattttcag agatttcaga tatatccaca catacataca ataggctata
     2821 ctacatctgt atgcaaataa atagacgacg ggatctatag ccagtgctac taattcagag
     2881 acctttagac cttctgactg atattttgcg tactcctaaa cttactctaa tcattaactt
     2941 tctgttacaa tttatcattt gaaaaaatat ataacatact tttgtttttt ctatgtgata
     3001 aaaagagagc agactattac aaactaccct tcttcttatt tatctaaaaa tatatcaagt
     3061 gataaaagca tatcagaaaa attttctaac tctatattag tcattgattt tagactagat
     3121 atattatatt atcagcataa ttacttcggc cacattgtag taatggatgt tttgatggga
     3181 ccgctgtttt ttttaatgga taatcgcaac ttcttttaat aggttcttaa tcatcttttt
     3241 tattttcagt tttcgattta attatataaa tcgtgaatag aatatgactt catctttgct
     3301 ataaccatct agtttaagtt actaatggcc gcgacatatg cacaccatcc tggtatatga
     3361 taacgacatt attgacaaat gcttaggtct cctacttcat tattcattta agtgttcaat
     3421 gccaaactgg gagataaaga atgaaaaaaa ttcaacccaa ttctatcaaa tatagaatct
     3481 gtattcataa ctatgcaact ctttttgttt tacctacggc tggtaagatt atcgaataat
     3541 ctcaactagt catagaagat ttattccaat tattgcttca tttacctaat aaaaattaca
     3601 tcttcagact cttatcatat atcatgtttt gtcaactact atatagatta tcacatgacg
     3661 aacctttact attttgaacc gctatattga tagataaatc aatagtaaca tagggtcgat
     3721 tatttgcaat gtcaattctt cttatttggc cattttaaat catcatctgg tcctgtgtgt
     3781 gctggtgcta ctttatttct gcttacatac aatactattt ctggctgaaa tcaaagctat
     3841 tttataacgt agattcaaag cagcatcata tactatgcga tcttttgaat caaaggcaag
     3901 gtgaatcaca gcagacaaat tttaacaatt ttgggtaagg tttaagaatg gtagtaaatg
     3961 gatattattt tgtataatgt agatggaatc ttcttctgtc tctgctacta ctaatactag
     4021 tattatggct aatgtaaagt ggactactct tgaacataag ggcgtagcat ttcctccaga
     4081 atatcagtca cgaggtatag gtataattat tcgaggtgaa agatttattc taaaccaaga
     4141 ccaagaggaa ttaatctatg catgggcaaa gaaaaagaat acacattaca tccaagatcc
     4201 catttttcaa tcgaactttc taatcgatct cagagcatta ttgcctgaga agttccgaag
     4261 tattgatttt ataaacgata ttgatttttc tgaagcattt agacttgtgg atcatgagaa
     4321 tgcaatgaaa gaagcagaga tacaaagaat aaagagtctt ccaaaagatg agaaaaagaa
     4381 aatatcttta cagaaaaagg aagaaagaga aaggctcaaa gccatatacg gtaaggcgat
     4441 tgtggatggt gtagaagtag aaattgccaa ttggctagtt gagcctcctg gtctattcat
     4501 gggaagaggc cagcatccat tacgtggcaa atggaagcca cgagtaagag ctcaagatgt
     4561 cattcttaat ctaggggaaa atgctcctgt tccagaagga gcttggaaag atatcgtcca
     4621 tgatcactca tccacatggc tcgctacatg gattgagaaa ataactggca agagaaaata
     4681 tgtatggctt catgattcag cggtgcttag acagagtaat gacaaagaaa aatatgacaa
     4741 agcaaagaac ctagaaaaat acattggcaa agtacaaaag caaattatca ggataatgct
     4801 taactctaat aacataaatc aaaaaaagat tgctacagta tgttatctga ttttcaaact
     4861 tgcaatgcgg gttggggacg aaaaagatcc tgacgaagct gatacggtag gtgcatctac
     4921 tctacgagtg gagcatatta aatttccaga gaagaatggt aaacaattta tagaatttaa
     4981 tttcttagga aaagatagcg taccttggca aaaaactctt gaagttaatt ctcaggatac
     5041 cagagggctt tacaataatc tcaaattgtt tatgaatggg aaggaacata attcaccaat
     5101 ttttgataag attacttcta gcaaggtcaa tatgtttctg cgaagcattg atccaaaaaa
     5161 tgtcccagga ttgacggcaa aggtctttag aacatatatt gctacaaaaa cggtcaaaga
     5221 agaactttca gatccaaaga taaggataga taagaattca ccagaagtag aaaaaatcta
     5281 tgttatgaaa atggcaaacc taaaaactgc aattacatgc aatcataaaa aaggaataga
     5341 cccaaagaat cctgcaagta gaaaagcatt agagaaattt gaagaggctt tgagaaacaa
     5401 ggaagaatct atcaaaagga ttcgatccga tatagcagca aagaagtgga agacggagat
     5461 tcagaaaaag agacttgaag acagattagt aaagctacag atgcagctta aattacagaa
     5521 agagactcgt gattataacc ttggaacctc tctgagaaat tatatcgatc cacgtgtaat
     5581 gagggcttgg ttaaattatg tacagcttga ctggaggaag atttatacta ctactcttca
     5641 acgcaagttc aaatgggttg atgattattc taacagcaag ttaaaagaat tttatccaat
     5701 tagagaagag acccctctcc aagaaatgaa aatagtacat aacgagagtt gaaaatctct
     5761 ccattttttt agaacactat aagataaata gtattattcc tctctgaggt ctcaattgtc
     5821 gtataatctt aattgtatga aaattggtat tttgatcatt tatcttaact ctttaggttc
     5881 ttgacaatct tcttgaggag atgagaatca atttttgatc tgctattcat aatctaatat
     5941 tcgaaattta tctatagtag tgaaatagtc aggtgtcttt cgttccttta tcagtaaaaa
     6001 tatgcagaaa gaattgtgat tagacgatct tgattaatat atgtttcaat aaatatatac
     6061 gtaaatatat gtgtatatat atatatcttt atgaatcact g
//
LOCUS       DATABJ010000141         2210 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1405105, whole genome shotgun sequence.
ACCESSION   DATABJ010000141 DATABJ010000000
VERSION     DATABJ010000141.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2210)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2210)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2210
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1405105"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1262)
                     /locus_tag="VHF44_02270"
     CDS             complement(<1..1262)
                     /locus_tag="VHF44_02270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124407.1"
                     /translation="MTKGEGNNININDSNNYTLEKKGGRYLFGDYTPFDENKNFINML
                     KDFVSVSSSIIQIHKNVERLRFVLNNAELLENEMIAKIKQLKNSTDASMDAFHKNYHE
                     DIINALFPTPTGTDLFFQIKNTLIHRLTDSEKEYARQSEEYKKYIHSKIEDFYKNAAM
                     LLQDWLSKDNFNLPFALTSNLLNVVEVSIDQSDDNSYRISRMSNIIIQMEKAVKFADT
                     AIDNRASSLFYSFLVDNSSIEFWSHKRKVSDLGIKDMLIPVGFKTPISERLKRPFRFM
                     SRGDDDQAPVEKDPEFVSADDYYLSYLKLEDGKTLSLILADDTSKLDDNVMKINYDLA
                     DWYQNDLDDKVDVSQNAEFYKRLISEEKVPKIDYIQDKEIRRLNLFQKEFMQFTDISK
                     ILLLGKVLTDKMNSILNPKAIASHIKLES"
     gene            1754..2170
                     /locus_tag="VHF44_02275"
     CDS             1754..2170
                     /locus_tag="VHF44_02275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124408.1"
                     /translation="MNIDYEFLYAFSKDILNLDRTIRWMGIANNFGVLLNVEHREGLI
                     PVLTEEENEEYASSTITRHKTRIKFESKIGKLIYALAKYQKLNRVTIPINENYFLLIA
                     LDAEVKDFDNIIMEKIIPLIKKEKHNFGNSHTIDHE"
BASE COUNT          754 a          354 c          311 g          791 t
ORIGIN      
        1 gattcgagtt ttatatgaga agcaatcgct tttggattta aaatgctatt cattttatct
       61 gttaatactt taccaaggag cagaattttc gatatgtcag taaattgcat aaattctttt
      121 tggaatagat ttaacctgcg gatttcctta tcctgaatat aatcaatctt gggcactttt
      181 tcttcagaga tcaatctttt ataaaattca gcattttgtg aaacatcaac tttatcatca
      241 agatcgttct gataccaatc agccaagtca taattgatct tcattacatt atcatctagt
      301 tttgaagtat cgtcagcaag tattaaagaa agtgtcttgc catcttctaa tttcaagtaa
      361 gatagataat aatcatcagc agaaacgaat tctggatctt tttccacagg agcttgatca
      421 tcatcgccac gagacataaa acgaaatggc ctcttcaacc tttcagatat tggagtttta
      481 aaaccaacag gtattagcat gtcttttata ccaagatctg aaacttttct tttatggctc
      541 caaaattcta ttgaggaatt atcaactaga aaggaataga aaagagaaga ggctcgatta
      601 tcaatcgcag tatcggcaaa ttttactgct ttttccatct gtattattat attactcata
      661 cgggaaatcc tataagagtt atcatcactt tgatcaatag atacttctac tacattcaat
      721 aaatttgatg ttaatgcgaa cggtagattg aaattatctt ttgacagcca gtcttgtaaa
      781 agcatagctg cattcttata gaaatcctct atttttgaat gaatgtactt cttgtattct
      841 tctgactgtc tagcatattc tttctcacta tcagttagcc gatgaatcaa tgtatttttt
      901 atttgaaaaa ataggtcggt acccgttggt gtaggaaata atgcatttat tatatcttca
      961 tgataattct tgtgaaaggc atccatagat gcgtcggtag aatttttcaa ttgcttaatt
     1021 tttgcaatca tttcattttc taataattca gcattattca atacaaagcg taatctttca
     1081 acatttttat gtatctgaat aatactactt gaaacagaaa caaaatcctt tagcatatta
     1141 ataaaattct tattctcatc aaatggagta taatcaccaa acaggtatct tcctcctttt
     1201 ttttctaaag tataattatt gctatcatta atattgatat tattaccttc tcctttagtc
     1261 attatagatt attgatcaga ttatatgatt taaagtatat gatttataca gtctgtcaat
     1321 acaagatgtt ctacatttaa ctttgtatat caatgtaggt aaatttcttt tgttctgctg
     1381 ctacattata cctcttaatg tctgagttaa ccacagttgt acatttgaat ctcgttctat
     1441 gacatctatt actattatta tcatcatcaa tattaattaa aatactatga aaagactatt
     1501 agcctacccg ttaacttcgt aggcaaccat aggcttttta attttattta tccactgttc
     1561 ttattttact acgatctatc atatagttct gctagcaacc tacatagagt gcatcattgt
     1621 ttgaatattc atcccagcac tccatagcca tagtgaacaa tttgctttca ataacaggaa
     1681 acttagacat attaaaattt tagccttaga ataacttctt aaacacacag atatatacta
     1741 tgattagtaa tacatgaaca tagattatga gtttctatat gcattcagta aagatatttt
     1801 gaatttggac agaactatta gatggatggg catagcgaac aattttggtg ttcttcttaa
     1861 tgtagaacat agggaaggat taatacctgt tttgactgaa gaagaaaatg aagaatatgc
     1921 atcaagtact ataaccagac ataaaactag aataaaattt gaatcaaaaa taggtaagct
     1981 gatttatgca ttagctaaat atcaaaaact caatagagtt acaattccaa taaatgaaaa
     2041 ttatttccta cttatagcac tggatgcaga agtaaaagat tttgataaca taataatgga
     2101 aaaaataatt ccacttataa aaaaagaaaa gcataatttt ggcaattctc atactatcga
     2161 tcacgaatag cagaatagag tgcttggttg tgcctagcaa taattctcgg
//
LOCUS       DATABJ010000142         4367 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_99194, whole genome shotgun sequence.
ACCESSION   DATABJ010000142 DATABJ010000000
VERSION     DATABJ010000142.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4367)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4367)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4367
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_99194"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1621
                     /locus_tag="VHF44_02280"
     CDS             <1..1621
                     /locus_tag="VHF44_02280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="EF-Tu/IF-2/RF-3 family GTPase"
                     /protein_id="HEX2124409.1"
                     /translation="QGNSVAFGSAKDRWGFNFKVAQKKGVSFKDVYDAYTSDGPDMIK
                     SLAERAPLHEAVLGMVVQHHPPPHIAQRYRIPKIWPGDLESALGKSLLACDEKGPAVM
                     MVTTINVDPQAGRVATGRLFSGTVKDGDEIYLIDAKRPGKVQSVNIYMGNTREVVSML
                     PAGNIPALLGLDYAVAGETISTVKSIPAFESIKYVSEPVVTIAVEPKHPKDLPKLVEA
                     LRRITVEDPNLIVKINEETGETLMAGMGVLHLEIATSLLQEAGLNITTTQPLINYRET
                     VRTKAGPIMSKSPNKHNKIFMRIESLDNEIIELIKTGQIKEDMDKKEMAKILREKGWN
                     ADEARNVAAIDVSGNMLIDETKGVQFIQESMDSIKSGFDDVIHSGPIAHESVRGVKFV
                     LHHFVPHEDPAHRGLAQLMPATRRAMLGSMLIADPVILEPILGMEVKCPQEQIGTVAG
                     ILSGKRGKLLNVEQKGVISIIQGEIPASETFDLSEIMRGGTAGKAMWSTYFKTWQPVP
                     QSIFRNLVGEIRKRKGLNPEPPKPDEFIDKE"
     gene            2058..3239
                     /gene="mpgS"
                     /locus_tag="VHF44_02285"
     CDS             2058..3239
                     /gene="mpgS"
                     /locus_tag="VHF44_02285"
                     /EC_number="2.4.1.217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0050504 - mannosyl-3-phosphoglycerate
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="mannosyl-3-phosphoglycerate synthase"
                     /protein_id="HEX2124410.1"
                     /translation="MRLDLPRYTERFGSISLHGVQRVYELDSGSSNGRPTSEAIRRIG
                     NEEMSEIERKMAIVIPVKGERLKLLEGVLSGIPHDCLTIIVSNSPRQPVDRYKLEKEA
                     LEQFNQFAEKNALIVHQKDPGLSEALREVGYTSIFGPDDMVRNGKAEGMIIGMLLTRM
                     AGKEYVGFIDADNYVPGAVNEYVKIYASGIAISNTPYTMVRVSWIYKPKISETGVYFS
                     KWGRVSEITNQYLNSLISYYTGFETEVMRTGNSGEHCMSMKLAELLTYSSSFSVETYE
                     MVNLLEEFGGIVPTENQEAMDKGIEVMQVETRNPHFHEEKGDIHLKEMIDGSLGCIYH
                     SKICHPKLREKIVEELRGKGVIEENQEPSVLQKINPFKDIDMLQFGKILHNKATSFVH
                     S"
     gene            complement(3259..4176)
                     /locus_tag="VHF44_02290"
     CDS             complement(3259..4176)
                     /locus_tag="VHF44_02290"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HEX2124411.1"
                     /translation="MWFIKNSEGITIFDKCILFFLKIIYLGLRILLRLALGKKRRDRF
                     YVKRGLDFGVFWYKTFKFLKPGNSTLLKFKVPKYDYEFYCRINKDDFKIMTIHEDDII
                     TRFTPKEGDIVIDIGAHIGLYTIISSKRVGAQGKVVAIEADPENFEMLNSNIKLNQLT
                     NVIPLNYAVYSKETKIKLYLPSGESGFTKYNTIMPNWINTQEKFVEVNANTLDYLLQL
                     NKIRQEEVNWIKIDVEGAEFEVLKGATNVLSKSKDVAILMELHGPPHIYRPKVEELVN
                     LYNFKIEFEKSYEENGSMHIIMQKSASTM"
BASE COUNT         1490 a          696 c          806 g         1375 t
ORIGIN      
        1 acagggaaac agtgttgcat ttgggtctgc aaaagacaga tggggtttta attttaaagt
       61 agcccagaaa aaaggtgtaa gtttcaagga tgtttatgac gcttatactt cagacggtcc
      121 tgatatgata aaatctttag cagaaagagc gccattgcat gaagctgttc taggaatggt
      181 agtgcaacat catcctccac ctcatatcgc ccaacgatat agaattccta agatctggcc
      241 aggtgattta gaatctgctc ttggaaaatc acttttggca tgtgacgaaa aaggtccagc
      301 agtaatgatg gttacaacaa ttaatgttga tccacaggca ggtagagttg caactggtag
      361 actcttctca ggtactgtca aagacggtga tgagatctac ctaattgatg caaaaaggcc
      421 aggaaaagtt cagtcagtaa acatttacat gggtaatacc agggaagtag taagcatgtt
      481 acctgcaggt aatattcctg cattgcttgg acttgattat gctgttgcag gggaaacaat
      541 ttcgactgtg aaaagcattc cagcatttga atcaatcaag tatgtttcag agccggtagt
      601 tacgattgca gtagaaccaa agcatccaaa agatttgcca aagcttgttg aagcattacg
      661 cagaatcaca gtggaagatc caaacctcat cgttaagatt aatgaggaaa caggtgagac
      721 tctgatggca ggaatgggtg ttttgcatct agaaatcgca acatcactcc tgcaggaagc
      781 aggtcttaat ataactacta ctcaaccatt gatcaactat cgtgaaactg tccgcacaaa
      841 agcaggacca atcatgagca aatctccaaa taaacataac aaaattttca tgcgcataga
      901 atcacttgac aatgagataa tagagcttat aaaaactggt caaatcaaag aagatatgga
      961 taagaaggaa atggcgaaga ttcttcgaga aaaaggctgg aatgctgatg aagcaagaaa
     1021 tgttgccgca attgatgtaa gtggtaatat gctaattgat gaaacaaaag gtgttcagtt
     1081 tatacaggag tcgatggact ctattaaatc tggctttgat gatgtaattc attctggtcc
     1141 tattgctcat gaatccgtaa gaggtgtcaa gtttgtatta catcattttg ttccacatga
     1201 ggacccagct catagaggtc tagcacagtt aatgcctgca actagaagag ctatgttagg
     1261 ttcgatgtta atcgcagatc cagttatact tgaacccata cttggaatgg aggtcaaatg
     1321 tccacaggaa caaattggca cagtagcggg tatattatca ggaaaaagag gtaagttatt
     1381 gaatgtagaa caaaaaggtg taatttcgat tatacaaggc gaaataccag catctgaaac
     1441 atttgatctt tcggagatta tgcgtggggg aactgctgga aaagctatgt ggagcactta
     1501 ctttaagaca tggcaacctg ttcctcaatc aatatttaga aatttggttg gagaaataag
     1561 aaagagaaag ggtttgaatc cagaaccacc caaaccagat gaatttatag acaaagaata
     1621 agaacacata tagcatttaa ttttggggta gtcaaactat atcatctata tacttagtct
     1681 gtgacagctg atacagtgag ataataataa tattattggt tggataataa agcatttaat
     1741 aaacacttgg ctattttata tgcccttctt tgcgcaattc ttccagtatt ttcattaatg
     1801 tatcataatc tatattaact tcatttagaa taaaggaatg ttctactttt ccaaatcttt
     1861 taataaattt ctcgactgtt tgctttttct tttgatatat ccttttctgc acatacgctc
     1921 ataatcttag aggttattat acatgattcg catatagtta tttatagata actagcagtg
     1981 tttaaagtaa aataattaaa ttatctatat gcctttctat tcctaatggt tataaacaat
     2041 tagatctttt agcttgtatg agactcgacc ttccacgata tacagaaaga tttggatcga
     2101 taagtctaca tggggttcaa cgtgtttatg aattggattc aggatctagt aacggtaggc
     2161 caacttctga agctattcga cgtataggaa atgaagagat gtctgaaatt gagagaaaaa
     2221 tggctatagt catacctgtt aaaggagagc gtttaaagtt acttgaagga gtgttgagtg
     2281 ggattcccca tgattgcttg acaattattg tatccaatag tccaagacaa cctgtggaca
     2341 gatacaaatt agaaaaggag gcgcttgagc aatttaacca atttgcagaa aaaaatgcat
     2401 tgattgtaca tcagaaagat cctggactat cagaggcact gagagaggtt ggctatacta
     2461 gtatatttgg cccagatgat atggttagaa atggcaaggc cgagggaatg attattggaa
     2521 tgctgttaac aaggatggca ggaaaagaat atgttggatt tatcgatgct gataactatg
     2581 tacctggagc agtaaacgaa tatgtaaaga tttatgcgtc aggaattgcg atatcgaata
     2641 ctccatatac aatggttcgt gtgtcttgga tttataaacc aaagatatca gagactggtg
     2701 tgtatttttc gaaatggggg agagtatctg agataactaa tcaatatctt aattcgttga
     2761 tatcttatta cactggcttt gaaaccgaag ttatgcgtac tggaaattca ggggaacatt
     2821 gtatgtcaat gaaattagca gagcttctaa cttattcgtc gagcttttca gtagaaacct
     2881 atgaaatggt aaacctactt gaagagtttg gaggaattgt gccgactgaa aatcaggaag
     2941 ccatggataa gggaattgag gtaatgcaag tagaaaccag aaatccacat tttcatgaag
     3001 agaaaggtga tattcactta aaagagatga ttgatggatc acttggttgc atttaccata
     3061 gcaaaatttg ccatccaaaa ctaagagaga aaatcgttga agaactgcgt ggaaaaggtg
     3121 tcatagaaga aaatcaagag ccatcagtat tacaaaaaat taatcccttc aaagatatag
     3181 atatgttaca attcggaaag attcttcata ataaagcaac aagttttgtt cattcctaat
     3241 agttaataaa taagttagtc acattgttga agcagatttt tgcataatta tatgcattga
     3301 tccattctcc tcataacttt tttcaaactc tattttgaaa ttgtataaat taactaattc
     3361 ttctactttt ggtctataaa tatgtggagg accatgtaat tccataagaa ttgcaacatc
     3421 tttactttta gataacacat tagtagctcc ttttaatact tcgaattctg ctccttccac
     3481 atcgatctta atccagttta cttcttcttg ccttatttta tttaattgca ataaataatc
     3541 taacgtgtta gcatttactt ctacaaattt ttcttgagta tttatccaat ttggcattat
     3601 agtattgtat ttggtgaagc ctgattctcc actaggcaaa tataatttta tttttgtctc
     3661 tttagaatat actgcataat tcaaaggtat aacattagtt aattgattta gtttaatatt
     3721 actatttaac atttcaaaat tctcaggatc cgcctcaata gcaactactt ttccttgtgc
     3781 accaactcgc tttgagctta ttattgtata aagacctata tgtgcgccaa tatctataac
     3841 tatatctcct tctttaggag taaaacgtgt tattatatca tcctcgtgaa ttgtcataat
     3901 tttaaaatca tctttgttaa tcctacaata aaactcgtaa tcatatttag gtactttgaa
     3961 ttttaataaa gtggaattac ctggctttaa aaacttgaaa gttttatacc aaaaaactcc
     4021 aaagtcaagt cctcgtttaa catagaatct atctcttctc ttttttccca aagctagtct
     4081 aagtaaaatt cttaagccta aatagataat ttttaaaaaa aacaatatac atttatcgaa
     4141 tatagtgatt ccttctgaat tttttatgaa ccacaaaatc aaatttagca tttattgcat
     4201 tgttttgaaa tacaaactta tataatcatt cctcaattcc aactacactt gattataatt
     4261 agatagatgt tataggatat aaaacactca aactatatat attatctcat catgacaaat
     4321 aactcacaag gaaagatgaa ataaatgtat tcgtatttat taacact
//
LOCUS       DATABJ010000143         2561 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_328336, whole genome shotgun sequence.
ACCESSION   DATABJ010000143 DATABJ010000000
VERSION     DATABJ010000143.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2561)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2561)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2561
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_328336"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            745..2457
                     /locus_tag="VHF44_02295"
     CDS             745..2457
                     /locus_tag="VHF44_02295"
                     /inference="COORDINATES: protein motif:HMM:NF024977.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2124412.1"
                     /translation="MTAELKIHPSFFREFATKTWVSPNEIVKELVENAFDEDATKVLV
                     TLLKNGTVIIEDDAGMNPDSMEKFLILGSPHKKHDTISPKLKRIRTGRYGTGRLSFLT
                     SFDSMRIRTRRDDFSKSILIDGDTLDKLFRGNVELKEIKEPMLDRNGTELTMKNPKVV
                     IDIFRLTKEIRKLAILRHPMFEVYVKEAENFVEWNFDRAQMIKAPDIQGHKIPVNIDN
                     GRISGEIVIARRPLSEDERGIAVMVGNHIVTRNNFGFDTKLNRVTGYIRCDTLTSRFA
                     DKSALIEDEEYLRFNQAMKTFIVDIVLPSLTEYEDVLITREESKIYREIDKVLGQAII
                     ENIESQEEVQGYEVVDMKEIIKGGDVLDPNINRAEEIPSEFIASSKDEYSDHRISHTS
                     GQAQDFTEVQEAISNENSSNVSQIDLEEQQQKAAQLASSEQLFEQGSSNTISQQAELV
                     QVVEQRDINGMVIRTRKVRKPIVKKTFALKKIGYKVIPYEDESDSRYSFTNENVVFVN
                     KANSTYRAEAARGDEFLLRHIINIVAETIAESKHPEGKHALELQNRLVAEAIRIHDYS
                     MIKK"
BASE COUNT          951 a          384 c          470 g          756 t
ORIGIN      
        1 aacattaata gcattgatac ccatgttcaa aaaagaaatt ggtcttaaag tcgggattat
       61 gttattcagt atgtatatta ttagtctatt tatacagttt cttctacctc aggagattaa
      121 tgagacacat taacaaagaa ataagtacca tccttcttgg aagaaatagt cctgtttcaa
      181 ttagccatta taaaaaagac ttgttattgc actggtttct ctaactcctg ataagatacc
      241 gataacatta atcaaagcat tcatagacat aataagaaga agagcaatgg ataacccgtt
      301 gacgatgaat attgatattc aaggactaaa ttatcaatgc ttgagattta cgtttgacat
      361 attatcttga ataattattg ataaaagtaa atatattaag gttctagatt aattgtaagc
      421 aatgaaattt gatttgttct atgtttcttg tgatgatatt aaaatttctt cgtttttcat
      481 tcgtttgatt tatcgatatt tgatagtttc ttatgacacc aacacaaacc acgaagttat
      541 ttccttcagg gaatacatac aaagtactca aatatcttct tatacatgct agacatactt
      601 tgaaatagca aaggtaagat acataattgc aataattatt ttactgatac tctgttttat
      661 aacattaatc tgactaacta aattgtcaaa attaatttga caagtaataa ataaatgaaa
      721 gcaggtactt cccttagttg agagatgaca gctgaattaa agatacatcc atcctttttt
      781 agagaatttg caaccaaaac atgggtttct cctaatgaaa ttgtgaagga gttagtagag
      841 aatgcttttg atgaagatgc tacaaaggtt cttgttactc ttttaaaaaa tggtacagtt
      901 atcattgaag acgacgctgg aatgaatcca gattctatgg aaaagttttt gatcttaggt
      961 tcgccacata aaaaacacga caccatttct cccaaattaa agcgaattag gacaggaagg
     1021 tacggtacag gtagattatc attccttact tcttttgaca gcatgagaat tagaacaagg
     1081 cgtgatgatt tcagtaaatc tattttaata gatggtgata ctcttgataa acttttcaga
     1141 gggaacgtcg aattaaaaga aattaaggaa cctatgcttg atcgcaatgg tactgaactt
     1201 actatgaaaa atccaaaggt tgttattgac atattcaggt taacaaaaga aattcgtaaa
     1261 ctggcgattt tgagacatcc tatgttcgag gtatatgtca aagaagccga gaattttgta
     1321 gaatggaact ttgatagggc tcagatgatc aaagcacctg atatacaagg tcacaagatt
     1381 ccagtaaata tagataatgg tcgcatcagt ggcgaaatag taattgcacg gaggccgctt
     1441 tctgaagatg aaagaggaat agccgtaatg gtaggaaacc atattgttac acgtaacaac
     1501 tttggttttg acaccaaatt aaacagagtg acgggatata tacgatgtga caccttaacg
     1561 tcaaggtttg cagataaatc tgctttaatc gaagatgaag aatatttaag attcaaccaa
     1621 gcaatgaaga cgtttatagt agatatagtc cttccgagtt tgacggaata tgaagatgtt
     1681 ttgattactc gtgaggagtc caagatatat agagagatag acaaagtact agggcaggcc
     1741 attatcgaaa acatagaatc tcaagaagaa gtgcaaggat atgaggtggt tgatatgaaa
     1801 gaaatcataa aaggaggaga tgttctcgat cccaatataa acagagccga agaaattcct
     1861 tctgaattta tagcttcatc gaaagacgaa tattctgatc ataggatatc acatacctct
     1921 ggacaagccc aagattttac ggaggtacaa gaagcaattt caaatgaaaa ctcttcaaat
     1981 gtatcacaaa ttgatttgga agaacagcaa caaaaagcag ctcagttggc atcttcagaa
     2041 caactatttg agcaaggctc aagcaacact atttctcaac aagcagaatt ggtacaagta
     2101 gtagagcaaa gggacataaa tggaatggtg atacgaacaa ggaaagtcag aaaaccgata
     2161 gtcaaaaaga catttgcatt aaagaaaatt ggctacaagg taattcctta tgaggatgaa
     2221 tcagattcga gatatagttt tactaatgaa aatgtggtat tcgtaaataa ggccaattcg
     2281 acttatcgcg cagaagcagc tagaggagat gaatttctat taagacacat aatcaacatt
     2341 gtagccgaga ctatagccga atctaaacac cctgaaggaa agcatgcctt agaacttcaa
     2401 aatagattgg tggcagaagc aattagaata catgattatt ctatgataaa aaaatgattt
     2461 actataacca taattagtta gaacttttaa ctatattatt ttttatatcg taacactcta
     2521 ccaagtgaac taatgaatag aaacgactaa atttaactac t
//
LOCUS       DATABJ010000144         1896 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_329083, whole genome shotgun sequence.
ACCESSION   DATABJ010000144 DATABJ010000000
VERSION     DATABJ010000144.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1896)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1896)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1896
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_329083"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            268..804
                     /locus_tag="VHF44_02300"
     CDS             268..804
                     /locus_tag="VHF44_02300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin family protein"
                     /protein_id="HEX2124413.1"
                     /translation="MPIDPDFPRNHQTIGKHMHSDGEHYHFVWGPGKPQEAAENEEVK
                     SAYSAKGEEQVPLGVHGTMVAVDWDSCIADGACIEACPVQVFQWYRTENDVPAVEMAN
                     ATSAGTGSSVKEERKDYTDKADPIREHDCIWCMACVSVCPPQAVKVDQSSLEYHEKAA
                     GTFSEELSKGSAPPPHAH"
     gene            1078..1650
                     /locus_tag="VHF44_02305"
     CDS             1078..1650
                     /locus_tag="VHF44_02305"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124414.1"
                     /translation="MGMFLPTDISYRITQFMAGKIEFPFIKKDELTATFYMFGKDYGV
                     KGQLEIMTVTELAKRAIGQLAKDIRGFYNMPNKMDSNFTRENYIRRSLQISIELQKDS
                     SFDWSKMNKRIAGDPSILSDCFAQHIAYYKQDYFCELFQPFDENHLPSSLRRKLEGRM
                     LLVCFNAKDSKSLPFESTLVPFIEWISNAG"
BASE COUNT          650 a          291 c          340 g          615 t
ORIGIN      
        1 tttggaacca atcacggaat ttgaactctc aaataacctt tccttgtgtt gtactgatag
       61 tattattctc ttgtttgtat aatagaatta atcaattaat tgatatgttt atatatattc
      121 taatattttc ttaatacttt attcctaatc tcatgattta atgtataagc tatatcatct
      181 acctatggga attcggaagt aatatgtatt attggaacct attcacatat ggtttatata
      241 atatggtaac ttgaaattta tttagatatg ccaatagatc cagactttcc cagaaaccat
      301 caaacaattg ggaagcatat gcattccgat ggtgaacact atcactttgt ttggggacca
      361 ggaaaacctc aagaggctgc agaaaatgaa gaagtaaaat cagcttattc agcgaaggga
      421 gaagaacagg tcccgttagg agttcacggc accatggtcg cagtagattg ggactcttgc
      481 atagcagatg gtgcttgtat tgaagcctgt ccagtgcaag tatttcaatg gtatagaaca
      541 gagaacgatg tacctgcagt agaaatggcc aatgctacaa gtgctggaac tggtagttct
      601 gttaaggaag agagaaagga ctacacagac aaggctgatc caattagaga acatgattgc
      661 atttggtgca tggcttgcgt ttcagtatgt ccgcctcagg cagtcaaggt agaccagtct
      721 agtttagaat atcatgaaaa agcagcagga acatttagtg aagagctatc aaaaggcagt
      781 gctccaccac ctcacgcaca ctgaaaataa tattcctata ctttcttttt atttcaacca
      841 ttttgaatta tacggcccta caataatgat gtagttaata tattacgatt tgtgattctc
      901 aagtaagatt ttccatttag ctaattagaa agtgataata aaatacagaa accttttagt
      961 taaataattc attaataatc aaggttttca gttggcgaga tattatgcag acataatatt
     1021 aaatattaaa tcaagcttat tctctcagca gtattggtag ttgtatcaga ttcctatatg
     1081 ggtatgttct tgcctactga tatttcttat agaattacac aatttatggc aggaaaaata
     1141 gagtttccct ttataaagaa agacgagcta acagcaactt tctacatgtt tggaaaagat
     1201 tatggagtaa aaggacagct ggaaataatg actgtgactg agcttgcaaa aagggcaata
     1261 ggccaattgg ctaaagacat aagaggtttt tataacatgc caaacaaaat ggattcaaat
     1321 tttactcgtg agaattatat aagaagaagt ctacagattt ctatagagtt acagaaagat
     1381 agttcgtttg attggtctaa aatgaacaaa cgaattgctg gcgaccccag tatcctgtca
     1441 gattgctttg cacagcatat cgcatattac aagcaagatt atttttgtga actatttcag
     1501 ccatttgatg aaaaccacct tccttcatca ctaagaagaa aacttgaagg aagaatgtta
     1561 ttagtatgct tcaatgcaaa agattccaaa tcattgccgt ttgaaagtac gcttgtccct
     1621 tttatagaat ggataagtaa tgctggttag tcattttgta gtaatagtat agaatgtatt
     1681 tacgcattag aaataaacga ttctaaaatc acaaaagatt tgcaacaatt ttccaatagt
     1741 attaatgata ttgttacttg tcgagtatat tataattata agtattaata tttttatata
     1801 tttaaataca atatttatta attcgcaatc aattatttag tatacgttac ttttatgcca
     1861 tctgaaagta tctaaaatca cttttatgac tggttg
//
LOCUS       DATABJ010000145         2077 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_330468, whole genome shotgun sequence.
ACCESSION   DATABJ010000145 DATABJ010000000
VERSION     DATABJ010000145.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2077)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2077)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2077
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_330468"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(314..1138)
                     /locus_tag="VHF44_02310"
     CDS             complement(314..1138)
                     /locus_tag="VHF44_02310"
                     /inference="COORDINATES: protein motif:HMM:NF016777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2124415.1"
                     /translation="MPLIIDCHVHLNNYYYDQFSKIGKKFLSLEERLNLLIDSMHDNG
                     IEYSLILSSYKVDVDRPSTSSIIDITKKYDNKLGVVAGFTIDNHTDEDLKNCREWLKD
                     GIIKGIKLYCGYEHYYPSDQRYQRVYDMCIEYGSPIMIHTGDVFLKTAKIKYSHPLNI
                     DDVAVDNPELKIVMCHLGNPWITDCQEVLYKNRNVYADISGLIIGNFTPSTEIYYMSK
                     IKELLTYVSEPHRLLYGSDWPISNISSYLSFIQKLELNQESLELLMFKNAKSVFAL"
     gene            1343..2005
                     /locus_tag="VHF44_02315"
     CDS             1343..2005
                     /locus_tag="VHF44_02315"
                     /EC_number="2.3.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012792.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008080 - N-acetyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0016747 - acyltransferase activity,
                     transferring groups other than amino-acyl groups [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEX2124416.1"
                     /translation="MSDLLHPRDLGIIVRNTQPEDIPKIIDLQEESFPYLARYGNIWR
                     PQELESHLRIFPQGQFVAVEPDGMVVGSASTLIVSLNPEYAEHTWKEITADGRFTTHN
                     SNGDSLYGADISTHPKHRHEGIGGMLYDARKELATKLNLRRMIAGGRLFNYSEYADRM
                     SPSEYAHKVIKGELKDPVLSFELDNGFRFIKILPNYLDDVRSLNYASFIEWLNPRYQQ
                     NR"
BASE COUNT          694 a          347 c          368 g          668 t
ORIGIN      
        1 aagcattgct gccttagatg cactcataca cgccacacca aaatcagtta agaagtgagt
       61 agcttacgaa accttcaggt ttggtttcaa atgaatttta tccaaatcta aatgagtcta
      121 ccctgctatg atttctttta aagggattca aagcgtagtt gcatagagaa ggttaactct
      181 agtaatagag aaagaagaca aaatgtcctt taagccttat tgataactgc gtttccatag
      241 tttaaactta ttgagtcagg acaaggaata gaactagtaa agatagtgga agggtataca
      301 aggcagacga ttatcatagc gcaaaaacac tttttgcatt cttgaacatt aagagctcaa
      361 gggactcctg attaagttca agtttttgaa taaaactaag gtaagaactg atattggaaa
      421 taggccaatc gcttccatat aatagtctgt gtggctcaga tacataagtc aatagttctt
      481 ttattttact catgtagtat atttcagtag acggtgtaaa gttgccaata attagtccag
      541 aaatatctgc atatacattt cgattcttgt atagcacttc ctgacaatcc gttatccaag
      601 gatttcctaa atgacacatc actatcttta attcgggatt atcaactgca acatcatcta
      661 tattcaaagg atgggagtat ttgatcttag ctgtctttaa gaatacatct ccagtatgta
      721 tcataatggg agatccatac tcgatacaca tgtcataaac tctttgatat ctttgatcag
      781 atggataata atgttcatat ccgcaataga gctttatgcc tttgataatg ccatctttta
      841 gccattctct gcaatttttt agatcttcat cagtatggtt atcaattgta aatcctgcta
      901 caactccaag tttattatcg tatttttttg taatatcaat gatgctagat gtagatggtc
      961 tgtctacatc cactttgtaa gatgagagta tgagggaata ctcaataccg ttatcatgca
     1021 tagagtcaat taataagtta agtctttctt ctaacgaaag aaattttttt cctatcttgc
     1081 taaattggtc ataataataa ttattgagat gaacatggca gtctattata agtggcattt
     1141 gatattccat ttctcgatta atcactgcaa attctgtacc ttgaatctga tcgtactata
     1201 aaactagcgt aatttaaaga atgtttgcca tagagataat cagaaaagta ttttctatga
     1261 atctaaatct attcttgatt agaaagatag agcttttata tctttcaaga tagtaagcca
     1321 ggtgtataca aacagaaagc atatgtcaga tttattacat ccacgtgatt taggaattat
     1381 tgttagaaat acacagccag aggacattcc taaaattata gatttacaag aagaatcatt
     1441 tccatacctt gctcgttatg gaaatatatg gcgtccacaa gagcttgaaa gccatcttcg
     1501 catttttcca caaggacaat ttgttgctgt tgaaccagat ggcatggtag ttggttctgc
     1561 cagtactctt atagtctcac ttaaccctga gtatgcagaa cacacatgga aagaaattac
     1621 tgcagatggt aggttcacaa ctcataattc taatggagat agtctgtatg gggcagatat
     1681 ctctacacat ccaaaacaca gacatgaagg tatagggggt atgctttatg atgctagaaa
     1741 ggaattagct accaagttga atctaaggag aatgatagca ggaggaagac tattcaatta
     1801 cagcgaatat gcagacagga tgtctccatc tgaatacgct cacaaagtga taaaagggga
     1861 attaaaagat cctgttttat catttgaatt agataatggg tttagattta tcaaaatact
     1921 cccaaattac ttggacgatg ttcgttctct gaattatgct agtttcatag aatggttaaa
     1981 tcctagatac cagcaaaatc gctaataatc agtaattgtc aagtctcctg cagtttactt
     2041 gaaaattaga gagtcaaaag cctctctaaa tttcaag
//
LOCUS       DATABJ010000146         3204 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_983414, whole genome shotgun sequence.
ACCESSION   DATABJ010000146 DATABJ010000000
VERSION     DATABJ010000146.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3204
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_983414"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            191..952
                     /locus_tag="VHF44_02320"
     CDS             191..952
                     /locus_tag="VHF44_02320"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124417.1"
                     /translation="MKISYELNPPKILIGDHFDAFKLNQEMQILLDRSSELINLATGI
                     HLTDSVLGIPRVSSVTAAGYIKNVGNKLKLSCSVRTRDRNFISLCQFVTDAILIGVES
                     LLILRGDEPTDGQKSSGLKPTSILSLLNDKKYDKAIHLNLSVPSKINNGSLLQKKIEA
                     KPHSWVTQLIASLSDLGEIVDIAKSFKIKVVACIMVPSDKNRRSAEIIGLDWNEYEKN
                     PVDFIKEASTMADEVLISSPNSFRAGIELLTKLGQ"
     gene            1030..1158
                     /locus_tag="VHF44_02325"
     CDS             1030..1158
                     /locus_tag="VHF44_02325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124418.1"
                     /translation="MPSSEILSCKVCGQTFDTIESLNEHMITEKEDVELRHKGVDG"
     gene            complement(1568..1825)
                     /locus_tag="VHF44_02330"
     CDS             complement(1568..1825)
                     /locus_tag="VHF44_02330"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124419.1"
                     /translation="MSIFALSLASISIAINSPAIHVILAQEETEDFVELEMDNGTTIS
                     VANGSGMMLDEDTNVIENSTLTVMENGTIQSKNASDPDKSN"
     gene            complement(2166..2957)
                     /locus_tag="VHF44_02335"
     CDS             complement(2166..2957)
                     /locus_tag="VHF44_02335"
                     /EC_number="7.6.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEX2124420.1"
                     /translation="MTKLEVKNITKRFKAIQGTDTISFNAIENICLSIEEGEFVCFVG
                     PSGCGKSTLLNILAGLDKPTEGEIILNGQPVTETGPDRIMVFQENALFPWLKVIDNVE
                     FGLKMAGLKKDKRRAIAIHYLDMMQLTKFAEAFTYQLSGGMKQRVAIARALVMDPEIL
                     LMDEPFAALDSQTRDLLLVELQLIWARTRKTIAFVSHNIAESVCLGDKIVVFSSRPGR
                     VKKEIKVDYRRPRLSEDSNLHEYQRKVLDELKSEIIAARKMEDKV"
BASE COUNT         1059 a          546 c          518 g         1081 t
ORIGIN      
        1 aacgttttta tttagttgta tcatgttttg aagaaagaaa gacaaatgca aattttcatt
       61 aaagataatg atcgcgcctt tactatagtt atatgctaaa gtttttccat tgtgaatata
      121 tgaaatagtt ctatagttag cctctcattt aataaaccca tcttataaag agatgccttg
      181 cagaaatact atgaaaatat cttatgaact aaatccacca aaaatactta ttggtgacca
      241 tttcgatgcc tttaagctaa atcaagaaat gcaaatttta ttagataggt cgtcagaatt
      301 gattaacctt gctactggta ttcatttgac agattctgtc cttggcatac cacgtgtatc
      361 cagtgttact gcagctggct atataaaaaa cgtaggtaat aaactgaaat tgagctgtag
      421 cgttagaaca agagatagaa atttcatatc actttgccag tttgtcacag atgcaattct
      481 tatcggagtc gaaagcttac ttatattgag gggcgacgag ccaacagatg ggcagaaaag
      541 ctccggactg aaacctacgt caatattatc tctcctgaat gacaaaaagt acgataaagc
      601 aattcatttg aatttatctg tccccagcaa gatcaacaat ggatcgttac tccaaaagaa
      661 aattgaagca aaaccacatt cttgggtaac gcagttaata gcatctcttt cagacttagg
      721 tgagatagtc gatatcgcaa aatcctttaa aattaaagta gtggcatgta taatggtgcc
      781 ttctgataag aatcggcgat ctgcagaaat aattggatta gattggaatg aatatgaaaa
      841 aaatcctgtt gattttataa aggaagcaag cactatggca gatgaagttc ttatttcctc
      901 ccctaatagt tttagggcgg gaatagagct gcttacaaag ctagggcaat aaatccattt
      961 atgtgctatt ttattgcctg acagtatata tatatacttt aatggcattg tatccatata
     1021 tataaaatca tgccttcaag tgaaattctc tcatgtaaag tatgcggaca aacatttgat
     1081 acgatagaat cacttaacga gcatatgata acggagaaag aagatgtgga acttagacat
     1141 aaaggtgttg atggttagtt taaacaaatc ataaaaaacc gagtatcata ttggtaattc
     1201 ttcattattt cagtccaata atttttgttg ccctttattg tccatgatta gtgcattttt
     1261 aattcttctc cgtatgatta ttaccataga atccgaatgc agtattgata acttttttta
     1321 ctcatttctt ctacctacta gaatggaaat gtagaagaaa catggtagaa agaacaaaaa
     1381 tagaatgact attacataaa cagtacacag aaaagtttcg caatacacga taattttttt
     1441 atatagttga ttatatcggt taacagatca gtgaaagagt atgctgatca ggtatggata
     1501 ccgtctgaat attggtgaaa ggagcaagtg aataagaatg aaagaattgt tgcaatttat
     1561 ttatagttca gttgctctta tcaggatcag atgcattctt gctctggatg gtaccgttct
     1621 ccatcactgt caaagtgctg ttttcaatta cattcgtatc ttcatctagc atcattcctg
     1681 aaccatttgc aactgatatt gtcgtgccat tgtccatttc taattcgacg aaatcttctg
     1741 tttcttcctg cgctaatatg acatgaattg ctggactatt gatggcaata gatatagatg
     1801 ctaaggatag ggcaaaaata gacatcaaag aaccgaatat gatgttggtt tgtactttgt
     1861 tcttcacgca tacaataaaa gcttctcgga aatttatata ttcttatatc aggttaaata
     1921 caattctcag aaagtggtca aaatacgaat acatattcta tataccttgc aatatgaatg
     1981 aaaattctga atgttaaatt tgatgaacaa ggaacgaagt atagcaaatc gtctaatcaa
     2041 gtcattaatt ccttgagaca tatttttaat taatcttctt tcagttcata gtttcgtttg
     2101 aattttaatc tcatctaact atcatatgat aagagtaaca aatcttatct ttttatagat
     2161 aaaagtcaaa ctttgtcttc catttttcga gctgcaatta tttctgattt aagctcatct
     2221 aacacttttc gttgatattc atgtaaattg ctatcttcac tcagtcgtgg tcttcgatag
     2281 tcaactttaa tctctttctt tactctaccc ggtctacttg aaaataccac aatcttgtct
     2341 cctagacaca ctgattcagc tatattatgg cttacaaatg caattgtttt tcttgttcta
     2401 gcccagatta attgcaattc tactagcaac aaatctctag tctgagaatc caatgctgca
     2461 aaaggttcat ccattagcaa gatctcaggg tccataacaa gagctcgtgc tattgcaact
     2521 ctctgcttca taccaccaga taattgatat gtaaaagctt ctgcaaattt agtcaattgc
     2581 atcatatcaa gataatgaat agctattgca cgtcttttgt cttttttaag tcccgccatt
     2641 ttcaacccaa attctacatt atcgattact ttaagccatg gaaataaagc attttcctga
     2701 aaaaccataa tcctatcagg cccggtctca gtaactggtt ggccatttaa tattatttca
     2761 ccttctgtgg gtttatccaa acctgctaat atattcaata gagttgattt accgcacccg
     2821 gaggggccga caaaacaaac aaattcgcct tcttcgatag agaggcatat attctctatt
     2881 gcattgaagg aaatagtatc tgttccttgt attgctttaa atcgttttgt gatattctta
     2941 acttcgagtt tggtcaatta acattacact cttaaaagag gaggttgtta aagtatatgt
     3001 tttttcaaaa ttcatttatt ttttaataaa ctacgtcgta gaattggttt cttttgtact
     3061 attattggca tacacatact taatcacatg aacataaaat gagaatatgt tagagtactc
     3121 tataagatag aacggacacc ttgataataa taaaatttca gcaatactca ctattatcga
     3181 ttacaaatag ctttattaaa atta
//
LOCUS       DATABJ010000147         2109 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_101724, whole genome shotgun sequence.
ACCESSION   DATABJ010000147 DATABJ010000000
VERSION     DATABJ010000147.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2109)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2109)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2109
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_101724"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            391..714
                     /locus_tag="VHF44_02340"
     CDS             391..714
                     /locus_tag="VHF44_02340"
                     /inference="COORDINATES: protein motif:HMM:NF012365.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit C"
                     /protein_id="HEX2124421.1"
                     /translation="MKLQSFSTIAMITSLTLIAAGYLINNAYAQEGATATADGSMKFI
                     GAGVAFGLAALGAGIAIGGVGAAGLAAITERPELRSQALVFTALGEAIAIYGIVVAII
                     ILGQS"
     gene            complement(923..1384)
                     /gene="pyrI"
                     /locus_tag="VHF44_02345"
     CDS             complement(923..1384)
                     /gene="pyrI"
                     /locus_tag="VHF44_02345"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004070 - aspartate carbamoyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0009220 - pyrimidine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase regulatory
                     subunit"
                     /protein_id="HEX2124422.1"
                     /translation="MSDTRQLLVRRIKDGTVIDHIESGKALLVLRTLDITGKEGNVIT
                     VALNVPSSKHDKKDIIKVENKFLEKHETNKLALIAPHATINIIKEYRLVEKRKIQLPD
                     SIIGVFKCPNLKCVTNSDEYIKPVINIIDKEKIVLRCKYCFRTLTINELVS"
     gene            complement(1481..>2109)
                     /locus_tag="VHF44_02350"
     CDS             complement(1481..>2109)
                     /locus_tag="VHF44_02350"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124423.1"
                     /translation="RERFDLANLTKAFEQIERDIQTKKLSKDEERKLVAKSKEIATRL
                     YALKIIHKKEDRYRNISSQYDTIKAKMNGIFDLKSELGNKIGELKKSLDVLLNLRESL
                     YEERRKVIREVREAAAKLEMVETQLNAIEFRRSRIQASEYRQRKQKESGERRESRYEV
                     AQERAKRSKENQERWNTLKEAALKKMSSGEKLTFEEMKLIFGDSNNPD"
BASE COUNT          604 a          381 c          334 g          790 t
ORIGIN      
        1 atttctcttt tgtaatgata acatggttaa gccattttcc tttgagatca ctccgactgc
       61 attattttta agggggattt caggcttatg atataagaat taaatgacaa gtaaatagtt
      121 ttgatagcca tctattatag gaaaaataag gttaatgtat tttgacggtc aggagcggcg
      181 acaatgagag ataagattta atgttgtgag gttaggattt atctggacat ctggaaatta
      241 agaaataata gcctttaaca ttaaatacta aaaaataaca taacacgctc aagtttttat
      301 aatcttagcg gcttcgttct ccattaaata tacctttttg gtccttttag ttatagttaa
      361 atatggcatt ttatcttgct taccttatat atgaaactac agtcattttc aacaatagca
      421 atgattacca gcctaaccct aattgctgca gggtatttga taaataatgc ttatgctcaa
      481 gaaggagcaa cagcaaccgc agatgggtct atgaaattta tcggtgcagg ggttgcattt
      541 gggctagccg ctcttggggc aggtattgcc attggtggtg tgggcgcagc aggtcttgct
      601 gctattaccg aaagacctga acttagatca caggctctag tctttacagc tctcggagaa
      661 gcaatcgcaa tttatggtat cgtcgtagca atcataatcc taggacaatc ataagagttc
      721 taatacttct ctctatagat gattggagag aaatcactct atatatcttt atatatatat
      781 acatatatac accatctaaa aatgatctat attaaatata tttctatatt ttttaattaa
      841 attaattata ctttttcttc atcaatagat atcgccatga gcgaaggaat ggtgccggtc
      901 acgatgttaa aatcgatggt tatcaagata ctaattcatt tattgtaaga gttctgaaac
      961 aatatttgca tcttaataca attttctctt tatctatgat atttataaca ggtttgatat
     1021 actcatcact gttagtaaca catttaagat tagggcattt gaaaactccg attattgagt
     1081 caggaagttg aatcttacgt ttttcaacta atctatactc tttgataata ttgatagttg
     1141 cgtgaggagc aattaaggca agtttgttag tttcatgttt ttctaaaaat ttgttttcta
     1201 ctttgataat atctttctta tcgtgcttgc tgcttggaac gtttaaagca acagttatga
     1261 catttccctc tttgcctgta atatccaatg tacgtaatac tagcaatgct ttgccagatt
     1321 caatatgatc tattactgtt ccatccttga ttctacgaac taggagctgc cttgtgtcag
     1381 acattcacaa tctagataag atgataaagc cggccaatta taatttgcta tacatagcaa
     1441 aaattccact cacactataa ctttcatctg aaatcatgta ttaatctgga ttattactgt
     1501 caccaaagat tagtttcatt tcttcaaatg tgagcttttc gccactggac atctttttca
     1561 atgctgcttc ctttaatgta ttccatcttt cttgattctc tttactacgt ttggctctct
     1621 cttgagcaac ttcgtatctg gattctcgcc tttctccact ttccttctgt tttctttgcc
     1681 tatattcaga agcttgaata cgcgaccttc taaattcaat tgcattgagt tgcgtttcaa
     1741 ccatttctaa ttttgctgcc gcttctctta cttcgcgtat tacttttctt ctttcttcgt
     1801 ataaactttc acgtaaattt aaaagaacat ccaagctttt cttcaattca cctatcttgt
     1861 taccaagttc tgatttcaga tcgaaaatac cattcatttt tgcttttata gtgtcatatt
     1921 gagacgaaat gtttctataa cgatcttctt tcttgtgtat gatctttaat gcatacaatc
     1981 tcgtagcaat ctcttttgat tttgcgacta attttcgctc ttcgtctttt gacaatttct
     2041 ttgtttgaat gtcgcgttca atttgttcaa aagctttggt caaattcgct agatcaaaac
     2101 gttctctac
//
LOCUS       DATABJ010000148         5711 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1855868, whole genome shotgun sequence.
ACCESSION   DATABJ010000148 DATABJ010000000
VERSION     DATABJ010000148.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5711)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5711)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5711
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1855868"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..200
                     /locus_tag="VHF44_02355"
     CDS             <1..200
                     /locus_tag="VHF44_02355"
                     /inference="COORDINATES: protein motif:HMM:NF013175.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124424.1"
                     /translation="NVHILEPREGIGGHCLPKDTKMFLQSSKSIKSKILQAAIEVDQD
                     YRQYRESRGMHPLISPSPQRH"
     gene            693..1535
                     /locus_tag="VHF44_02360"
     CDS             693..1535
                     /locus_tag="VHF44_02360"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEX2124425.1"
                     /translation="MEYAHPEVLVDTQWVEDHLKDPKVRVAEVDYDPKANYKLGHVPG
                     AVLFDWKEDINDPLTRNIFSKQSCEDLLQRAGISNDITLILYGDFNNWFAAFAFWVFK
                     YYGYDDIRLMNGGRKKWLEEDRPLSKDIPEYPKGNFKAAEPDKSIRVFLNYVRDSLGS
                     SQKALIDVRSPKEFTGEILAPPEYPTEHAQRGGHIPGALNIPWSQAVSEDGTFKSAEE
                     LKKLYESKGITSDKEVITYCRIGERSSHTWFVLKYLLGYPDVKNYDGSWTEWGNMIDN
                     PIEK"
     gene            complement(1582..2247)
                     /locus_tag="VHF44_02365"
     CDS             complement(1582..2247)
                     /locus_tag="VHF44_02365"
                     /inference="COORDINATES: protein motif:HMM:NF013743.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HEX2124426.1"
                     /translation="MKIDHCIFPEGIFYDTENFVWANLNNDKTVTIGITAILASIAGR
                     LSTIKLKEIGTELEKGKSVGTIESIKYFGVVRTPVRGSIAEINKDIINQPKLVNDFPY
                     TEGWIMKINPSNLSKDLIGLDTIENCHTKIISTIEELHVRCFAEFPDHEMFEIGVECA
                     ATLTKLDELMTKLSIGEVIHLVSDDQTADLEIYRWADENKQSLLETRREGNLFHFILK
                     KIK"
     gene            2698..3813
                     /locus_tag="VHF44_02370"
     CDS             2698..3813
                     /locus_tag="VHF44_02370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEX2124427.1"
                     /translation="MAILTLGFVLSSFNQSSVKAQDHSKKGIVGGHTPGYNLLETVGD
                     VLDPISFNSAEEAIIDPMHYLREFNYGRVSTLSDGVVLREFTLIASDNKVKEISPGIF
                     YNVWTFNGTIPGPTLRATEGDLIRINFINNGSKFHTIHTHGIHKAEMDGVFEGIAPGG
                     KFTYEFIAQPFGVFPYHCHIQPLEEHISHGLYGVYIVDPRTPRPPADEMVMVMNGYDT
                     DFDTENNFYTVNGIPYYYMEHPIQIEQDRLVRVYLVNMLEFDPINNFHLHANLYQLYR
                     SGTNLVPDEYTDMVTMSQGERGILEFKYKFPGQYMFHAHKTEFAEKGWMGLFFVKDSK
                     ALESSSDDVGDVNDNNTTTSIVYSQNRSKFNLEEVSK"
     gene            3813..5090
                     /locus_tag="VHF44_02375"
     CDS             3813..5090
                     /locus_tag="VHF44_02375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divalent cation transporter"
                     /protein_id="HEX2124428.1"
                     /translation="MEKEERSIYRQISGKKLIAFAIIPFVVLTAMILFLFSPIGQSFL
                     NSGVPVPEVTIEKIEFQEGKIVAFIRNTGPVDITIAQADINDRIHPAAIEPSRSLPRL
                     TEAQVIIPFPWNPAEPYEVGITTSDGVRFSKNVEAAAQVLTLNVEQVLLFAVIGAYVG
                     IIPIMIGLLWYPFIRRLNTNKYNFFLSLTAGLLVFLGIDAVLESNEIISENVAAIFNG
                     QVLIVMVVIVSFLVLLYTSETLTQRAAKKSVSANYSTSSLSSSASTTSQQQQELIKPL
                     AISLMIAIGIGLHNFGEGLAISAAVLLGKAALGTFLIVGFTLHNTTEGLAIVAPVAKS
                     GQVMIRKLIVMGFIAGAPTIAGAWIGGFLYSPLAAIIFLSVGAGAIFQVVYSIASWIS
                     HTSSQNRKTLMNTSTIAGFAIGMLIMYTTGLLI"
     gene            5128..5604
                     /gene="mntR"
                     /locus_tag="VHF44_02380"
     CDS             5128..5604
                     /gene="mntR"
                     /locus_tag="VHF44_02380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0003700 - DNA-binding transcription factor
                     activity [Evidence IEA];
                     GO_process: GO:0006355 - regulation of DNA-templated
                     transcription [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MntR"
                     /protein_id="HEX2124429.1"
                     /translation="MIGNLKHESSLKSARLESIRDANGVKREDRTTRMEDYLEVIYEL
                     IQQKGYATTVEISKYLNVSSPSVTKMVQRLDESGHLNYEKYRGISLTHEGLLVAKSIR
                     ERHGLLADFFKMIGVDEDSANKDAEGIEHHLHPETLKKLEEFIKIVKKNPKLITSD"
BASE COUNT         1875 a          946 c         1083 g         1807 t
ORIGIN      
        1 ggaatgtaca tattcttgaa ccaagagaag gaattggtgg gcattgtcta ccaaaggata
       61 ctaaaatgtt cttacaatca tcaaagtcta ttaaaagtaa gatattacaa gcagcaattg
      121 aagtagacca agattataga caatatagag aatctagagg gatgcaccca ttgatatctc
      181 cctcacctca acgccattag tgagttaagt atactagaga ttaaaataat catagtatac
      241 gttacgagag gccgttacat cttacttttt ctttttttct ttcagatgct gtggcatgat
      301 aatagattct gaaaatcgac ttttaattct ctacctcaat tgagtattgg tttgatcata
      361 taaagactta attcaatctc aacgtatagg tgtttagtaa atccagtatt tagttgatag
      421 gtatcatttt tcacatctac ttatctaaag ctctaaatgc cttagaagat gctcacaaat
      481 gtctattatt tatgtatatt tcgtaaataa acaagtttat agtgttgtgt tatctgactc
      541 ttactttttg atatatggcg acaatattaa taattcatct agtatttctg gctatgaatc
      601 aggttatgtt tttgataaat taatacacta atcataatag acacctgttt aaaatttaat
      661 atacgacaag gatctatctg tagtgaatat tattggaata tgcacatcct gaagtattag
      721 ttgatactca atgggtagaa gatcatctga aggatccaaa agttcgagtc gctgaggttg
      781 attatgatcc gaaggcgaat tataaattag ggcatgtccc aggggccgta ttatttgact
      841 ggaaagaaga cataaacgac ccgttaacta ggaatatttt tagtaaacaa tcttgtgaag
      901 atttgctgca aagggctggg attagtaacg acataacgct gatcctatat ggcgatttta
      961 acaattggtt tgcagcattt gcattctggg tgtttaagta ttatggttat gatgatatta
     1021 gactcatgaa tgggggtaga aaaaaatggt tggaagaaga caggccattg agcaaggata
     1081 ttccagagta tcccaaaggt aactttaaag ctgcagagcc agataagagt ataagagtat
     1141 tcctaaacta tgtcagagat tcgttagggt caagtcaaaa agcattgatt gatgttagaa
     1201 gtccaaaaga attcacaggt gagatattgg ctcccccaga atatccaaca gaacatgccc
     1261 agcggggagg ccacattcct ggtgcactta atattccgtg gagtcaagca gtcagtgaag
     1321 atggtacatt caagtctgca gaagagctaa aaaaattata tgaatcaaag ggaataactt
     1381 cagataaaga ggttattaca tattgtcgaa taggtgagag gtcatcgcac acatggtttg
     1441 tcctaaaata tttgcttggc tatcctgatg tgaaaaatta tgatggatct tggactgagt
     1501 ggggaaatat gatagataat ccaatagaaa agtgatgtat caaaataata cacaagacaa
     1561 atgccttgtc agtcagtctg tctactttat tttcttcaat ataaaatgga aaagattgcc
     1621 ctctcttctt gtctctaata gtgattgttt gttctcatcc gcccatcgat agatttctag
     1681 atccgctgtc tgatcatcag atactaaatg tattacttcg ccgattgaca gttttgtcat
     1741 caattcatca agttttgtaa gagtggcagc acattcaact cctatctcaa acatttcatg
     1801 gtcaggaaat tctgcaaagc atcttacgtg taattcttca atagttgaaa ttatcttagt
     1861 atgacaattc tcaatagtat cgagaccaat taaatcctta ctaagattgg agggatttat
     1921 cttcattatc catccttctg tatatggaaa atcatttact aacttgggtt gattaattat
     1981 atctttatta atttctgcaa tgcttcctct gacaggggtt cgtacaacac caaaatattt
     2041 tatgctttct attgtcccta cactttttcc cttttctaat tctgtgccaa tttcttttaa
     2101 ttttatcgtt gatagtcttc cagcaatcga ggccaaaatg gctgtgatcc caatagttac
     2161 tgttttatca ttgttaaggt ttgcccaaac aaagttctca gtatcataaa aaataccctc
     2221 agggaatata caatgatcta ttttcacaga ttgatatata atgataccaa gtttattctt
     2281 ttacattgtt gtatcgatat gcctagatcg cccattacaa acatacatca gacattaata
     2341 gtaaggctaa gagtcctctt ttcattacaa tctatggtta gatttttcaa catctcgtat
     2401 atattacaga tcaaagagtt agttagcctg attgaaagag ctataggaga taatttttgt
     2461 cacagatggc ttgctttgta tataatatat tttctggtat ctttagttat atcaatgttc
     2521 gacggagcga aggtgacggc aatatgaacg gttttttacc atagatacca aatatataac
     2581 atcatttatt tattatacca cgatataata atgttagcct aggctaacat ttattaacta
     2641 ttataaatta tttacattgt gtcacgtacg caattaattc taatttccat cttcataatg
     2701 gctattctca ctctaggctt tgttttatca tcctttaatc agagttcagt aaaagctcaa
     2761 gaccattcaa aaaaaggtat agtcggtgga catacgccag gttacaatct attagaaaca
     2821 gtaggagatg ttttagatcc tatttctttt aattctgctg aagaagcgat aatagatcct
     2881 atgcattatt tacgagagtt caactatggt agagtatcta ccttatcaga cggagtcgta
     2941 cttagggaat ttacgcttat cgcatcagat aacaaagtca aggaaatatc acctggtata
     3001 ttctataacg tttggacatt taatggaacg attcccggac ctacgttaag ggctacagaa
     3061 ggagatttaa ttagaattaa ttttataaat aacggttcaa agtttcatac aatacatact
     3121 catggcatac acaaggcaga aatggacggc gtctttgaag gtatagctcc tggaggaaaa
     3181 tttacttatg aatttattgc tcaacccttt ggagtatttc cataccactg ccatatacaa
     3241 cctttagaag aacatatctc gcatggcctg tatggagttt acattgttga tccaaggaca
     3301 ccaaggcctc cagcagatga aatggtaatg gtgatgaatg gctatgatac agactttgat
     3361 acagaaaata acttttacac agttaacgga attccatatt actatatgga gcaccctatc
     3421 caaattgaac aggatcggtt agtgagagta tacttggtga atatgttaga attcgatcca
     3481 ataaataact ttcatttgca tgcgaatttg tatcaactct atcgaagtgg aaccaattta
     3541 gtaccagatg aatatactga catggtaacc atgagtcaag gagaaagagg tatacttgaa
     3601 tttaaataca aatttcctgg acaatacatg ttccatgcac acaagacaga atttgcagaa
     3661 aagggatgga tgggattatt ttttgttaaa gattcaaaag cactcgagtc cagttctgat
     3721 gatgttggtg atgtaaatga taataacact actactagta ttgtttattc gcagaatcga
     3781 tcaaagttca atctagaaga ggtatctaaa taatggaaaa agaagaaaga tcgatctata
     3841 ggcaaatttc aggcaagaag ttgatagcct ttgcaataat tccatttgta gtattgacgg
     3901 caatgatttt atttcttttt agtcctatag gccaatcttt tctaaactct ggagtacccg
     3961 tgccagaagt tactatcgaa aaaatagagt ttcaagaagg taagattgtt gcatttatac
     4021 gaaatactgg tccagtagat atcactattg cacaggctga cattaacgat agaattcacc
     4081 cagcagcgat tgaacctagt agatctttgc caagactaac agaggcgcaa gttatcattc
     4141 catttccttg gaatcctgct gaaccatatg aagttgggat cacaacatct gatggtgtga
     4201 ggttcagtaa gaatgtggag gcagctgccc aagtcctaac tctaaatgtt gaacaagtct
     4261 tgctgtttgc agtaataggt gcatacgtag gaatcatacc aattatgata ggtctcctat
     4321 ggtatccctt tattaggagg ctcaatacaa acaaatacaa tttttttctt agccttacag
     4381 caggtttgct tgttttcttg ggaatagatg cagtgctaga aagcaatgaa atcatttcag
     4441 agaatgttgc agcaatcttt aatggtcagg tgttaatagt tatggttgta attgtttcat
     4501 tcctagtgct attatataca tctgaaacat taactcagcg agctgcaaag aaatcagtgt
     4561 cagcgaatta ttcgacttct tctttatcat cttctgcttc aacaacctca caacaacaac
     4621 aagaactaat aaaacctcta gcaatatcac taatgatagc cataggaata ggcctgcata
     4681 atttcgggga aggtttggca attagtgcag cagttttatt aggtaaagct gccctcggta
     4741 cttttcttat agttggattt acgttacata ataccacaga aggcttggca atagtagcgc
     4801 cggtcgctaa gagcggacaa gtcatgatac gaaaactgat agtaatgggg tttatagccg
     4861 gtgcaccgac tatagctgga gcatggatag ggggatttct gtattctcct cttgcagcta
     4921 taatattttt atcagtgggt gctggggcaa tctttcaagt agtgtattcc attgcttctt
     4981 ggatatccca tactagcagc caaaatagaa aaactttgat gaatacatct acaatagccg
     5041 gatttgctat tggaatgctg ataatgtata caacgggttt actaatataa tgatataagg
     5101 agctatgaat aagtaggagt agtcaacttg atcggtaact tgaaacacga atcatcatta
     5161 aaaagtgcta gactggaatc gattcgtgat gctaacggtg taaagaggga agaccgtaca
     5221 actagaatgg aggattacct agaggtgatc tatgagttaa ttcaacagaa aggttatgct
     5281 acaactgtag aaatttccaa atatctaaat gttagttccc caagtgtgac caaaatggtt
     5341 cagaggctag atgagagcgg tcatcttaat tatgagaaat acagaggaat cagccttaca
     5401 catgaggggc tccttgttgc taaaagtatt cgtgaaaggc atggtttatt ggcagatttc
     5461 tttaaaatga tcggcgtaga tgaagattct gcaaataaag acgctgaagg aattgaacat
     5521 catttgcatc ctgagacact taaaaaatta gaagaattta taaagattgt aaaaaagaac
     5581 cccaaactta tcacatcaga ctaatggaag agaaaacata ttcatcattg aatctatgta
     5641 aaaattctgt ttgttaataa tataactagc gattattaca ccatgtctat acgtttgaga
     5701 acgtatatcg t
//
LOCUS       DATABJ010000149         1963 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1858911, whole genome shotgun sequence.
ACCESSION   DATABJ010000149 DATABJ010000000
VERSION     DATABJ010000149.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1963)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1963)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1963
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1858911"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            958..>1963
                     /locus_tag="VHF44_02385"
     CDS             958..>1963
                     /locus_tag="VHF44_02385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lyase family protein"
                     /protein_id="HEX2124430.1"
                     /translation="MSSFRIDSDSLGEIEVPSDAYFGPFTARAMNKYNVTGQRAHINL
                     IKAYVMIKMSAAQANKDLHALDANKADAIIKACEEILSGKLVEQFVVESINSGAGTAF
                     NMNSNEVIANRALEILGNKKGEYEIINPNDHVNMSQSSNDTFPTAMHLAILYNMNDTV
                     SALDKLIQSLSNKAEEFRNVVKIGRTHLMDALPVTLGSEFQQYAYSLAQSKLKMIEVI
                     EDLLYVGLGGTAVGTGANSPKGYKEIAIDYLSKISNLKLKPSPNMYYSLQSKYPVANC
                     SSTLRNLALELLKMSNDLRLMASGPVAGFAEILIPAVHAGSSIMPGKVNPSLAECLNM
                     I"
BASE COUNT          664 a          343 c          341 g          615 t
ORIGIN      
        1 gatcatttcc ttctcattcc tgtcatcaaa gataattatc tcgcgtactc cttttttgtc
       61 ggatagtatt accttactca cttccattct tcagttacaa ttgtatccga tagagatcta
      121 gttaaagcat ttgtctaata ataccctcta cattcatgcg acacgtagtg aaaatattgc
      181 cgaagaatgg aacaagtata ttccaataaa aaatcatgtt aacaatcata gtagaatgag
      241 aacgcctctc ccttgcaata tcatttaaga acggtttatc tagacaagca ttgcaaacac
      301 gagccaaata tcctcgagtt gtatttgaat attcgatagg ccctaagttt aaaagaaact
      361 aaagatacag atcagatcaa aaaagaagaa aatgattaat aattttacct gttatcaatt
      421 ttattgctaa tgctcttgcg taaagttctc ttatggcgtt ctaagaaatg tcatgtttat
      481 cagattgatt ttatctggtt atctattttt atattctgtt atcaaaattc tggatatcac
      541 cagctctatt ttgttatatt aatatcagat gcaatataaa gtgaatctat tacaaagaat
      601 attagcaaaa gtaataaatt taatcaagat cattgcattc tataaaaaac agaatagaca
      661 ttatttcttt accaattcat ggcttgcgaa cttctaacga taccggatat ctatatactg
      721 actatattag ctggatattt tagtacggag ttgtaaccag ataggttttt gacagaagcg
      781 agaatcctca ataataagca tcttaattca ggcctggggg gatttagcag gatttatcta
      841 cgatgttagt acttatatga caaaaaataa tcagctatgt ctaggagaag cataatctaa
      901 aggatcgata tagttgtcga ttggtttatt aacactttat ccatagtgcc tagcgagatg
      961 tcaagtttca gaattgacag cgattcatta ggtgagatag aggttccatc agatgcttat
     1021 tttggacctt tcacagcacg agctatgaat aaatataatg ttacgggtca gagagcacac
     1081 ataaacctta tcaaggcgta tgtcatgatt aagatgtctg ctgcacaagc taacaaagac
     1141 cttcatgccc ttgatgcaaa taaagcagat gctatcataa aagcctgtga agagattctt
     1201 tcaggcaaat tagttgagca attcgttgtt gaatcgataa attcaggagc agggactgca
     1261 tttaacatga attcgaatga agtaattgca aacagagcac tagaaatttt aggaaacaaa
     1321 aaaggagaat atgaaatcat caatccaaac gaccatgtca atatgtcaca gtccagtaat
     1381 gatacttttc caacagcgat gcatctggcc atcctgtata atatgaatga cactgtatct
     1441 gctctagata aactcattca atcattatct aataaagcag aagaattccg caatgtagta
     1501 aagattggta gaactcattt gatggatgca ttacctgtaa ctcttggaag tgaatttcaa
     1561 caatatgctt attcattggc acaatctaaa ctaaaaatga ttgaagtcat agaagacctc
     1621 ctatacgttg gacttggagg tacggcagtg ggtaccggcg ctaattctcc taaaggatat
     1681 aaggaaattg ctatagatta tctttcaaaa atttctaact taaagttgaa accatctcca
     1741 aatatgtatt actctttgca aagtaaatat cccgtagcga actgctcctc tacacttcgc
     1801 aatttggcat tggaactgtt aaaaatgtca aatgatttaa gattgatggc atcagggcca
     1861 gttgcaggct ttgcagaaat tctgattccg gcagttcatg cgggctcttc cattatgcca
     1921 ggaaaagtca atccttctct tgctgaatgt cttaacatga ttt
//
LOCUS       DATABJ010000150         1873 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_336396, whole genome shotgun sequence.
ACCESSION   DATABJ010000150 DATABJ010000000
VERSION     DATABJ010000150.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1873)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1873)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1873
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336396"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..195)
                     /locus_tag="VHF44_02390"
     CDS             complement(<1..195)
                     /locus_tag="VHF44_02390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124431.1"
                     /translation="MSCWLILSVAGVNSVYAQEAADEPGITISSPEQGQQVPVGQLTI
                     SGTSTDNPTTDCQVSVDVNDV"
     gene            782..1249
                     /locus_tag="VHF44_02395"
     CDS             782..1249
                     /locus_tag="VHF44_02395"
                     /inference="COORDINATES: protein motif:HMM:NF013777.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2124432.1"
                     /translation="MQYIKGQEEEGESISNDKGAILPQVRFIKCPIKTSLGVLGKKWT
                     ILIIRDIGFRKIERFNRILESIPGLTPRVLSMRLKELEKEGFIKCAEEKKSPMMVLWR
                     LTEKGKDTLPILMQLVAFGSKWYSDVVFEDKRPRNLNEIFPQPEAREIIRGIN"
     gene            complement(1549..>1873)
                     /locus_tag="VHF44_02400"
     CDS             complement(1549..>1873)
                     /locus_tag="VHF44_02400"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124433.1"
                     /translation="LLPSKYIVVNYCKLYLTMVYSNKVKTRNLTSKLLSLDIDEGLRI
                     ESSVRGIRLFINKSASGTFVIQFCNNKDDKENENNNFVYFDSAEEIIKFIKMKFGRNF
                     SVWSY"
BASE COUNT          631 a          318 c          349 g          575 t
ORIGIN      
        1 tacgtcattt acatctacgg aaacttggca atcagttgtc ggattatctg tagatgttcc
       61 tgaaatggta agttgaccaa ccggaacttg ttgaccttgt tcaggtgagc taattgtaat
      121 accaggttca tctgctgctt cttgagcata tacgctattg acgccagcaa cagaaaggat
      181 tagccaacaa gacaacagta tagatactac ttgaagtttt aaacacacaa gtactttcat
      241 acatagcttc gagaatttag gctttataac aatataaggt ttgattaatt agactaatga
      301 taaacaattc taacatatgt gtaggagttt aacaagtaat gttagtaata taagatgtat
      361 taaaaggtaa tttctcagag aatatttatc ttctttgcat ttccacttgg ctagacaaat
      421 ataggatctt attttaattc atatactata tagactttga agatctgaca ccaaccgaag
      481 attacttgaa gacggtttat caagttctat tcaaataata atggatagaa aattcttatt
      541 attatgaact ctctaaaacc aaaagtcatc agttattggt tgtaaaagaa tatgcacgta
      601 ttgtaaggat gaacaactaa aaaaggatta ggttattcac ttagcgcact cactatactt
      661 ccatatagcg aaagcgttgt ttttcgtatc aaggcaaact gcgaaataac ccattcctgg
      721 tactgcattt ttggaaacac aaagagttag tttaaaaata tgcaaggaag taaaagcata
      781 gttgcaatac atcaaaggtc aagaagagga gggagaatca attagcaacg acaaaggcgc
      841 catcctaccc caagtaaggt tcatcaagtg cccgattaag actagcctag gagtgctggg
      901 caagaagtgg accattctga taatcagaga catcggcttc cgcaagattg agcgtttcaa
      961 tcggatctta gaatctattc caggtcttac gccaagggtc ctttcaatgc gtctgaagga
     1021 gctcgagaaa gaaggtttta ttaaatgtgc agaggaaaag aaatcgccaa tgatggtgct
     1081 atggaggctc actgagaagg gtaaagacac gcttcccatc ttgatgcaat tggttgcctt
     1141 cggctcaaaa tggtattccg atgtcgtatt tgaggacaag aggcctagga acttaaacga
     1201 aatctttcct cagccagaag caagagaaat aattaggggt attaactgag agaactccta
     1261 ttgtgagcat cctgcacctt cagcgtgtat atttagctag atatgcaaga agtattcata
     1321 gctcgattgt ggtctgaaca gcatctatta cggacgattg gtttatcggt tctatgaccg
     1381 aattatatga tataataaga gcaggctata catcatgtta tcattagtgt tagaaaaatt
     1441 tacaggaaag aaaccagtat cttttttgct cagtttgcca gagattatgc agagggcttt
     1501 taaatggcat caattgttcc tcttgaaaag atatgactag tattaatctc aatacgacca
     1561 aactgagaaa tttcttccaa atttcatctt tatgaattta attatctctt cagctgaatc
     1621 aaaatataca aagttattat tttcattctc tttatcatcc ttattattgc agaattggat
     1681 gacaaaggta ccagaagcac ttttattaat aaatagtcta atgccacgaa cggaactctc
     1741 tattctcaat ccttcatcga tatctagaga taatagttta cttgttaaat ttcttgtctt
     1801 gaccttatta gaataaacca tggttaaata tagtttacaa tagtttacaa caatatattt
     1861 agatggcagc aat
//
LOCUS       DATABJ010000151         2248 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_336452, whole genome shotgun sequence.
ACCESSION   DATABJ010000151 DATABJ010000000
VERSION     DATABJ010000151.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2248)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2248)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2248
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_336452"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1051)
                     /locus_tag="VHF44_02405"
     CDS             complement(<1..1051)
                     /locus_tag="VHF44_02405"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEX2124434.1"
                     /translation="MGFSLPITTYSQLEIQQKDSSSINKVVILTFGNAPKSQYTEAKP
                     ILDKYGFKASFFVVCNWISNSDEDNSHMTWQDIKTLYNEGHNIGAKSLNHKDLTTLSA
                     SELDFEVAQSKKCLADHNIDARVFGTPYGKGWDNPTVIDTIAKYYDFAITGFSKLMYL
                     NCDGWSEQEENDYISNVQTDCRTYSDDGALTYANRYSIKEWSHSNADKEYFGNDQIIF
                     EEFVKAVNSQDEFNKDGTIRAIPIIAYHDLDHNITPDSTSVNLFDAEMKYLYDNGFTV
                     LTMADLAYDESTHQLYIEYIGPSTIRQIGSATTQTEAVPDEDDNDVEEEVMGLESDNN
                     ADIGFDNGEQEEDYEV"
     gene            complement(1432..>2248)
                     /locus_tag="VHF44_02410"
     CDS             complement(1432..>2248)
                     /locus_tag="VHF44_02410"
                     /inference="COORDINATES: protein motif:HMM:NF019949.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="transcriptional regulator FilR1
                     domain-containing protein"
                     /protein_id="HEX2124435.1"
                     /translation="LLPLIFLVLSLEDASIVSEIFSELASETRCSILISLDKKPAKLS
                     SIARELDITSQDAFRNINRLVEANLVGRGGGEDGSAFQLTELGMLATKHIPYFLVIKK
                     HQELFEDHTLKYIPDKFVQRIGALQNCEVVENVTPVLERLKKLECSAKQYLRIMVSQA
                     WPEEGKILAERAMNDVEVCTIIGRNTVFPKEVIESVVPALDGLQKSGKIKRKMLDTVS
                     IAIYISDSQSAVMLPNMKGEVDMGILLVGTDPSFNEWCLDLFNYFWERADLRA"
BASE COUNT          684 a          451 c          340 g          773 t
ORIGIN      
        1 tgacttcata atcttcctcc tgctcaccat tatcaaatcc gatatcggca ttgttgtctg
       61 actctaatcc cataacttct tcttctacat cattgtcatc ttcatctggt actgcttctg
      121 tttgcgttgt tgctgatcca atctgtctta tagttgatgg tccgatatac tctatataca
      181 attgatgagt actttcatcg tatgctaagt ctgccatagt aagtactgta aaaccattat
      241 catacaaata tttcatttct gcatcaaata aattcacact agtactatca ggtgttatat
      301 tatgatctag atcatgatat gctattatag gaatagccct tatagttcca tctttattga
      361 attcgtcttg gctattgaca gctttcacaa actcttcaaa tattatctga tcattaccaa
      421 agtattcttt atctgcatta ctatgactcc attctttgat agagtatcta tttgcatagg
      481 tcaacgcacc atcatcagaa tatgttctac aatcagtctg tacatttgat atgtagtcat
      541 tttcctcctg ctcactccat ccatcgcaat tcaagtacat cagtttagaa aaaccagtaa
      601 tagcaaaatc ataatatttt gcaatagtat caatcacagt tgggttatcc catcctttgc
      661 cgtaaggtgt accaaaaact ctggcatcga tattgtgatc agctaagcat ttttttgatt
      721 gtgctacttc aaagtccaat tcactagcag agagtgtagt aaggtcttta tggttcaaag
      781 atttggctcc tatgttatgt ccttcattat ataatgtctt tatatcctgc catgtcatat
      841 gtgagttatc ttcatctgaa tttgaaatcc agttgcatac cacaaagaaa ctggccttaa
      901 atccatattt gtctaaaatt ggtttggctt cggtatattg gctttttggt gcattgccaa
      961 aagttagaat aactactttg ttaatactac tactgtcttt ttgttgaatt tctaactgac
     1021 tataggtcgt aattggtaaa gaaaatccca ttataattgt tatgaatgca ataacgataa
     1081 tagccgaaac tagatgtgca aaattccgta ttttttaaca ccaaatatac acatcaaaga
     1141 tagtatattt atactatttg agagaaaaat ttaagcaagt gacatgtttc agagggggac
     1201 aacaaggagt ggacgtaaaa agacatgagc gatagttcat gagtgcttat tgtattctgt
     1261 tcttttctca atctctttat tatcaatcat gtttctatct atcacagcaa tttcaagtcc
     1321 tattaatgcc atggatatga ttaaacaatc tattaaaaga catagaaaag ttatcagaac
     1381 attttgaaaa ttaagaagaa ataaaatatc tctaaactat ttttgccttg tctaggctct
     1441 gaggtccgca cgttcccaaa agtaattgaa caaatcaaga caccattcat taaatgatgg
     1501 atcggtgcca acaagcagta tccccatatc aacctctcct ttcatgtttg gaagcatcac
     1561 ggcagattgt gaatctgata tatatatagc aatacttact gtgtcaagca tttttctttt
     1621 aattttacca gacttttgca atccatcaag agcaggtact acagattcaa tgacttcctt
     1681 tggaaatacg gtattacgtc caattatagt acaaacttcg acatcattca tagcgcgctc
     1741 tgcaagtatt tttccctctt caggccatgc ctgagaaacc attatcctta gatattgttt
     1801 cgcgctacac tccagtttct ttagcctttc taaaactggt gtcacatttt ctacaacttc
     1861 acaattctgt aaagccccaa ttctctgaac aaacttatcg ggaatatatt tgagagtatg
     1921 gtcttcaaag agctcttgat gcttctttat gactagaaaa tatggaatgt gctttgttgc
     1981 aagcattcct aactctgtta actgaaaggc actaccgtcc tcacctcctc ctcttcccac
     2041 aagattagcc tccaccaatc tgtttatatt ccgaaaagca tcttgagaag taatatcaag
     2101 ttctctagca atagaactga gctttgctgg ttttttatct aacgatatca gtatagaaca
     2161 cctagtctca cttgccaatt cactaaaaat ctcagatact atagatgcat cttcgaggct
     2221 gagcacaaga aaaattagtg gcagcaat
//
LOCUS       DATABJ010000152         2008 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1409372, whole genome shotgun sequence.
ACCESSION   DATABJ010000152 DATABJ010000000
VERSION     DATABJ010000152.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2008)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2008)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2008
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1409372"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            187..753
                     /locus_tag="VHF44_02415"
     CDS             187..753
                     /locus_tag="VHF44_02415"
                     /inference="COORDINATES: protein motif:HMM:NF016246.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF488 domain-containing protein"
                     /protein_id="HEX2124436.1"
                     /translation="MDNPIIFTIGHSNRSWDIFLSLLLKNDISIVVDIRRFPSSRLWP
                     QFNKDHMKIGLAKHNIEYIHIVKLGGRRKEKDKPNLQENDNNNNYAWRNKSFRAYANY
                     MSTEEFKEGISELLSLKKDDLGGFVVIMCAETLPWRCHRRLISDYLSARNFKVYNIID
                     DLHKPSLHKITPFALFEKGKVTYPASND"
     gene            1095..1667
                     /locus_tag="VHF44_02420"
     CDS             1095..1667
                     /locus_tag="VHF44_02420"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124437.1"
                     /translation="MFDEKRQYPFSMKHEEKRIGANASEQDIQIDASTVQAPMHQVNP
                     IELTIKRDNNSNTTTVSTGTTTDNNFSLMRDEETDITTRITNTGDVLYNSVLLSIDKA
                     RRKSSEKAKEFVTRDANPAVIEAKKDAQDIAALGESVEGLARTFENLMTEIRKKPYSE
                     QVRLLTGYKKLLKEQINVIDSRINMAKRLK"
BASE COUNT          742 a          335 c          353 g          578 t
ORIGIN      
        1 tattccgtat atttagtgcc gttaatatag tcacactaca ctaccgcttt ttctctaatc
       61 catgccaaga tatctaccct ttcgaatttc taagctctat aaaattctag gctattaatg
      121 tgataatgac aaaaatgata aatcaaattc atataactat attgtaactt tacgtgtatc
      181 aaatttatgg ataatccgat aatctttact atcgggcatt caaatcgctc atgggatatc
      241 ttcctatctt tactgctaaa gaacgatatt tccatagtag tcgatataag gcgtttccct
      301 agctccagat tatggccaca atttaataaa gatcacatga aaatagggct agctaagcac
      361 aatatcgaat acatccatat tgtaaaatta ggtggcagaa gaaaagaaaa agataagccc
      421 aatctacaag agaatgataa taataacaat tatgcttgga ggaataaaag ctttagagca
      481 tatgcaaatt atatgagtac agaagagttc aaagagggca tcagtgaatt actttcactg
      541 aaaaaagatg atctcggcgg ttttgtagtc attatgtgtg ctgaaacgtt accatggcga
      601 tgtcaccgca ggttaataag cgattacctg tctgccagga attttaaggt ttataatatt
      661 attgatgatt tacataaacc ttcacttcac aagatcacac cttttgcgtt attcgaaaaa
      721 ggaaaagtaa cctaccctgc ttctaatgat tgaagaatag gtatgaatac agcaaaaaat
      781 agttgagtag ataaaagaag aattgtgata ttagatatca tatttgtaac tagttgacat
      841 tattcctatt gtatttggat ataggtgcag attagataag gttcataaca tacgtaatga
      901 tgcatggtta tgactaagtt aacagagcct tacaaaaaac aaaaagaaga agattgcaaa
      961 aagagttggc gaggctttct caactgtgac agcaaagact tcttattgta gtcttaaggc
     1021 tatctattat tacaaaatac caaagaatcc ttatcttgca gagataatag actatgtgac
     1081 agtaatttta aaatatgttt gatgagaagc gacaatatcc attctcaatg aaacatgaag
     1141 agaagagaat aggcgcgaat gcttcggaac aagatatcca aattgatgcc tcgactgttc
     1201 aggcacctat gcatcaagta aatccgatcg agcttacaat caagagagat aataacagca
     1261 acactactac tgttagcact ggcaccacca ccgataacaa ctttagtttg atgagagacg
     1321 aagaaacaga cattaccaca aggataacaa atacaggcga tgtattgtac aactcagttc
     1381 tactttcaat tgataaagcc aggagaaaat cttcagaaaa agcaaaagaa tttgttacaa
     1441 gagatgccaa tccagcagtg attgaagcaa agaaagatgc acaggacata gctgctcttg
     1501 gagaatccgt agaaggtcta gcaaggacat ttgaaaacct tatgacagaa ataagaaaga
     1561 agccttattc agaacaagtg cgtttgctga caggatacaa gaagttgctc aaggagcaga
     1621 ttaacgtaat tgactcacgt atcaatatgg ctaagaggtt aaaatagaga tttttgaaag
     1681 aagcatcata aaagttatgg gtcctcctct cattttgaaa gttttctatc tccctgcaag
     1741 ttttgagaga tggtctaaat taacacacat gatacaaata acttcataac agcaaacatg
     1801 ggaagagata aataaactaa gcttaatctc ttcttggatt taaatgaatt ttaatccaaa
     1861 aaatagaatc aatcatactt taacccttta tcatcatcat tttaagatat agttattgta
     1921 tagaatatac gtcatatacc ttccttataa tactataata tttgccatag attttcctgc
     1981 aggcagaggg gctattatca gccagttc
//
LOCUS       DATABJ010000153         2376 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_989789, whole genome shotgun sequence.
ACCESSION   DATABJ010000153 DATABJ010000000
VERSION     DATABJ010000153.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2376)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2376)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2376
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_989789"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            361..1986
                     /locus_tag="VHF44_02425"
     CDS             361..1986
                     /locus_tag="VHF44_02425"
                     /inference="COORDINATES: protein motif:HMM:NF019310.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022857 - transmembrane transporter
                     activity [Evidence IEA];
                     GO_process: GO:0055085 - transmembrane transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEX2124438.1"
                     /translation="MSDSKYAYSEFWRIVVILSLVAIVIEYAETMLFPAIPDIIADFK
                     SSYSNSSWVLSGYLIAAAVMAPLVGKLSDIYGKKKVLSVIMMILVASITIAGFSKNIE
                     TLIGVRIVQGIGLSMFIIALSIMQSNVPKEKYALANGILASAYFSGSSIGLVLGGVII
                     HYFEWRTAFFSLIPIVIILFTIVIRFLHVKGEHDEEQQDRRNHYGIPARYDGNRNENE
                     TRNMSNKIDEKKENNSDSGKNNSYFVPPLNVKHTFFKSLDITGVITLAVTITLFLTSL
                     TYMENYDSNESAGDYNPIFIIGLAVSAVLSFIVFLIVEKKAVSPLVDLRLIANKTIFP
                     VLMMFLVLGFTMFMVYQTIPILVRAPAPLGFEGSTVASSLVLLPFTLVFLALSPTVSI
                     LVRKFGNMKLFMAGSVISAVGYFSIFLFHSTELEVSITLTIVSSGLALLNTVGMNIVM
                     LSTPKRFGGVIIGMVQVLMFAGMSTGPVVGGIFMERNQEYIDGILTSYPSALAYDLIF
                     LAASIASLSFVALAIILKMQKNLSNVSDPIHNP"
BASE COUNT          750 a          403 c          431 g          792 t
ORIGIN      
        1 attcaatccc cattaattta tagagatgga atcgtcaaac agaaatgatt ttactcaagg
       61 cttgtagttt ttatcaaact tcatgacatt ctttgaatct tggaagctct caaggtgttt
      121 ttgagctaga atggcaagct cgaaggttct ctcttcccca caattcaatt gtttttttta
      181 ttttgccaca tactttctta gcagttgcat ataacttgta agttcttatc caaactacca
      241 taatggggat gagagagtag ttgtaatatt cttactcgtg ttacgattat aaatgtctca
      301 tttaataaac tgacgtagca atagctaata atataacaat aacggtgttc gaaaaaggta
      361 ttgtcagatt ctaaatacgc ttattctgag ttctggagaa tagttgttat tctaagtcta
      421 gttgcaatag tgatagaata tgcagaaaca atgctatttc ctgctattcc agatattata
      481 gcggatttta aaagcagcta ttctaattca tcatgggtat tatcaggtta cttaattgca
      541 gcagcagtga tggcacctct tgttggaaaa ctctcagaca tttatggaaa aaagaaggta
      601 ctcagtgtta ttatgatgat attagtcgca agtattacca tagctggttt tagtaaaaat
      661 atagaaacct tgattggcgt cagaatagtc caaggaatag gactttccat gttcataata
      721 gcgctgtcta tcatgcaatc gaatgttcca aaggaaaaat atgcactagc taatgggatt
      781 ctagcctcag catatttcag tggatcctct atcggtcttg tgttaggtgg tgtcataatt
      841 cattactttg aatggagaac ggcattcttt tccctgattc ctattgtgat aatacttttt
      901 acaattgtaa taagattcct tcatgtaaaa ggagagcatg atgaagagca acaagataga
      961 agaaatcact acggtatacc tgccagatat gatggaaaca gaaatgaaaa tgagacaaga
     1021 aatatgagta ataagattga tgagaagaaa gagaataaca gtgacagcgg taaaaataac
     1081 agttactttg tacctccact aaatgttaag cacacctttt tcaagagttt agatattaca
     1141 ggagttataa cactggctgt caccataaca ttgtttctta cttctttaac atatatggaa
     1201 aactatgata gcaatgagag tgctggcgat tataacccga tatttatcat aggactggca
     1261 gttagcgcag ttctttcatt catagtattt ttaatagttg agaaaaaagc agtatcaccg
     1321 ctagtcgatc ttagattaat tgcgaacaaa actattttcc ctgtacttat gatgtttttg
     1381 gtattgggtt ttacaatgtt tatggtatac cagaccattc caatattggt aagagctcca
     1441 gcaccattag gatttgaagg aagtacggta gcttcttcac ttgtattgct tccttttacg
     1501 cttgtattct tagcgttgtc tccaacagtt agtattctgg ttagaaagtt tggaaatatg
     1561 aaattattta tggcaggtag tgtgattagt gctgttggat attttagtat ctttctattc
     1621 cactctactg agctagaagt atcaataacc ctcacaattg tgtcttccgg attagctttg
     1681 ttaaatacag ttggaatgaa tatagtaatg ttatctacac ctaaacggtt tggaggagta
     1741 attataggaa tggttcaagt tcttatgttt gctggcatgt cgactggacc tgtcgtggga
     1801 ggcatattta tggagagaaa tcaagagtat atagatggca ttttaacttc atacccttct
     1861 gctttagctt atgaccttat attcttggca gcttcaattg catccctttc gtttgtagca
     1921 ttagcaataa tattaaaaat gcaaaaaaat ctttcaaatg tatcagatcc cattcataat
     1981 ccgtgaagtt actatcccat gataattgtt gcaataatgc tctgttgcac gatccgtttt
     2041 gcgtatctgt gcaacactaa ataaaatgtc aattgaccag agcacattga ttaagtaaaa
     2101 tatagaggta attcaaaggt acactaattc tcaatttgct cgtaaagatt taggttactt
     2161 tatctcccca acacgtagcc taaacttttg aaaggcggag gaactatttc tctacactaa
     2221 gcttttagtc ttcgcacttg agcgagttct caatatctat atcaagtcaa catctacatc
     2281 atccgaacaa ccataccata aacctcattc accttttgaa agagatacaa cttctataac
     2341 tcacacgatg tgatgcttgc tacagaaatc aagcat
//
LOCUS       DATABJ010000154         1558 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_105207, whole genome shotgun sequence.
ACCESSION   DATABJ010000154 DATABJ010000000
VERSION     DATABJ010000154.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1558)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1558)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1558
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105207"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1558
                     /locus_tag="VHF44_02430"
     CDS             <1..>1558
                     /locus_tag="VHF44_02430"
                     /inference="COORDINATES: protein motif:HMM:NF021370.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2070 family protein"
                     /protein_id="HEX2124439.1"
                     /translation="VSHLLLGLTTTTGAAFLDFFLLHRTPNNKITKIYHVSAFANLLW
                     ALTILLGIASDILLSKNEVTTNYIVEGMFLAIGLRTGIFTSVFGATLSNAIPVSFISP
                     LLFLFAFLPFTFYFEALTTPIALGFGSSLLLLGIIWTIFADRAGRPRIESTFRVLQAF
                     LAAWTENKAENMEKITESRAHIETVLTYILKLKTMNSNEIFMILPDIHPGPFHPIGGS
                     NLPYLLYMLFSKNAMVMHSVSDHSLNIPSKKEVNKYIKTLSDLRQSEVGTVCTNPIQI
                     KMGKCTVTGIAFGHSVVVFLSMAPVGMDDVPEHIRAALEHYSADIGFHNILIVDTHNA
                     MGKFLNKQDSNVMISAAKHCLNELKHARQHEFKIGFTNSADLSHNIESMPDLGQSGLS
                     SLLLLVEEKPYFIGWADSNNMDNGLRDYIISRLNNNKINMLEICTSDTHSTSGKRNRQ
                     GYYTFGNISKPDQVANIYLQLSKKSIEKASPSTYELLLSRSAIKVMGKNQFKDYSIAL
                     EKSMNLTKIFL"
BASE COUNT          500 a          287 c          263 g          508 t
ORIGIN      
        1 gtttctcatt tgctgttagg attgacgaca actacaggag cagcttttct tgattttttt
       61 ttattacaca gaactccgaa caacaagatc acaaagatat atcatgtttc tgcgtttgca
      121 aatcttctgt gggctttaac aatactgctt ggaattgctt cagatatatt gttatcaaag
      181 aatgaggtta ccacaaacta tattgttgaa gggatgttct tagcaattgg attacgtaca
      241 ggaattttta cttctgtttt tggtgcaact ctcagtaatg caataccggt ttcctttatt
      301 tcaccactgc ttttcttatt tgcttttttg ccttttactt tttattttga ggctttaaca
      361 acaccaatcg ctcttggttt cggttcttct ctcttattac ttggaattat atggactata
      421 tttgctgata gagctggcag acctagaatt gagagcacgt tcagggtttt gcaagcattc
      481 cttgctgcat ggactgaaaa caaagcagaa aatatggaga agatcaccga gtctagagct
      541 cacattgaaa ctgtgctaac atatattcta aaattgaaaa ctatgaattc caatgaaata
      601 tttatgattc tacctgatat acacccagga ccatttcatc ctataggtgg aagtaacctc
      661 ccttaccttc tgtatatgtt attttctaaa aatgccatgg ttatgcacag tgtatcggac
      721 cattctctga atattccttc aaaaaaagaa gttaacaaat acattaaaac cttatctgac
      781 ttaagacagt cagaagtagg cactgtttgc actaatccaa ttcagattaa aatgggtaaa
      841 tgtacggtga caggaattgc atttggtcat agtgttgttg tgttcctctc tatggctcca
      901 gtaggaatgg atgatgtgcc tgaacatatt cgcgcagcct tagaacatta ctcagcagat
      961 attggatttc acaatatact tattgtagac actcataatg caatgggtaa attcctaaat
     1021 aaacaagata gcaatgttat gatatctgct gctaaacatt gtttaaatga actgaaacac
     1081 gcaagacaac acgaatttaa aatcggtttt accaactcag cagatctttc acataatatc
     1141 gaatctatgc cggatttagg acaatctggt ctttcatcac tactgctgct tgttgaagaa
     1201 aaaccctatt ttataggttg ggcagattct aacaacatgg ataacggtct tcgagattat
     1261 attatttctc gcctaaacaa caataagata aatatgctcg aaatatgtac atccgatacc
     1321 cattcgacat ctggaaaaag aaatcgacaa ggatactata cttttggcaa tatcagtaaa
     1381 ccggatcaag ttgctaatat ctatcttcaa ttgtcaaaaa agtctattga aaaagcgagt
     1441 ccatcaacat acgaattact tttaagcaga tcagcaatca aagttatggg caaaaatcaa
     1501 tttaaggatt attctattgc cctagagaaa tcaatgaacc ttaccaaaat atttcttg
//
LOCUS       DATABJ010000155         1618 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_105733, whole genome shotgun sequence.
ACCESSION   DATABJ010000155 DATABJ010000000
VERSION     DATABJ010000155.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1618
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_105733"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            266..739
                     /locus_tag="VHF44_02435"
     CDS             266..739
                     /locus_tag="VHF44_02435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0009055 - electron transfer activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="plastocyanin/azurin family copper-binding
                     protein"
                     /protein_id="HEX2124440.1"
                     /translation="MEKLRENHAGGISMIAFIVAVAVSLGYYQYIYLPESSAKPNVPE
                     EVANPPQTVQVSIAEGAALPSNPEFYTPKDVRGALGVDNKIVWTNADTTAHTVTTDTD
                     FHDKLNGKFDSMETIGLVAPGQTYEFTFTEEGEFPYHCEPHPWMTGSVEIVKSFS"
     gene            complement(736..1104)
                     /locus_tag="VHF44_02440"
     CDS             complement(736..1104)
                     /locus_tag="VHF44_02440"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124441.1"
                     /translation="MSKIKDISIMIMEKEIPSGKDVHGSIDLNYQGRFDSIIINSQIQ
                     NSNDVFNYTDLNGKKINHPYARLAIFRDDIGDNKTLKFIANTKHVPSANSSNVKFRVT
                     IIQEHKEVASDVTNIKIVKS"
BASE COUNT          537 a          282 c          266 g          533 t
ORIGIN      
        1 tagcgatgca acgaatgtct tggaagaaag atcttcttct actactgaaa tgcgtaaaac
       61 atagtcaaat aactaggaat atgcgactca aagataacaa atcattaatc acggccgagc
      121 agcattgatt attgctttaa aaccattcaa gcaaacaatt tttttctact tatcaaatcc
      181 ccttacatag aatgttcctt attttaattg taaccagtaa caaagaacct ttatatgcca
      241 aaaacccaat aaattgattt gatccatgga gaaactaaga gaaaatcatg ctggtggtat
      301 tagcatgata gcctttattg ttgcagtggc agtaagcctt ggttactacc aatacatata
      361 cttgcctgaa tcgagtgcaa aacctaatgt acctgaagag gtagcaaatc caccacaaac
      421 agtacaggtt tcaattgcag aaggtgcagc ccttccttct aaccccgagt tttatacacc
      481 aaaagatgtg cgtggcgcgt taggagttga caacaaaatt gtctggacaa atgctgatac
      541 aactgcgcac acggtcacca ctgatactga ctttcacgat aaacttaacg gtaaattcga
      601 ttcaatggaa actataggct tagttgctcc aggtcagaca tatgaattta cctttacaga
      661 agaaggagag tttccatatc attgtgaacc tcatccatgg atgacaggaa gtgttgaaat
      721 cgtaaagagt tttagctaac tttttactat ctttatatta gttacgtcac tggcgacttc
      781 tttatgttct tgaataatcg ttactctaaa ttttacattt gaggaatttg ctgatggtac
      841 atgttttgta ttggcaataa attttagagt tttattatct cctatatcgt ctctaaatat
      901 agcaagtctt gcgtaaggat ggttaatctt ttttccattg agatcagtat aattgaaaac
      961 atcatttgag ttttgtattt gtgaattaat tattatacta tcaaaacgtc cctgataatt
     1021 aagatctata ctgccatgaa catctttacc tgaaggtatc tctttttcca ttatcataat
     1081 tgaaatatcc ttgattttgc tcattcagat gtcggtgctc attatttgtc atatatatat
     1141 gtgatatgaa catgtctaaa ggagaatact actcacagtc tattttgaac tgcattatac
     1201 aaatacgaga tgagaatatt gacttgacaa tactttgctt aatatttctc tccccataaa
     1261 agttgagtta tagatctatc taaaaattct gccatagaat gctaaagaca aatagactca
     1321 tcagaataag acgtacatta atttgtatat acttataact attacttcct agcataaact
     1381 taaatgataa catattaaat caggtacagt aattactgta tttgtagaac gtatttgtca
     1441 gatcaaaaca ttcccatgaa agtgtcctat gttaatggtt acggaataag gtattttgac
     1501 tatgacaagg taattaatcc atcaaatgat cgtaaagatc taattctcct ccatggatta
     1561 ggagcctctg ctgaaagatg gttacgtgtt atcccagatt taactaagcg ttttagag
//
LOCUS       DATABJ010000156         3323 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1642113, whole genome shotgun sequence.
ACCESSION   DATABJ010000156 DATABJ010000000
VERSION     DATABJ010000156.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3323
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1642113"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1427)
                     /locus_tag="VHF44_02445"
     CDS             complement(<1..1427)
                     /locus_tag="VHF44_02445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2124442.1"
                     /translation="MKNNDNNLTLKVAETNPKFVGRGIALIDPKVMEELNLATGDVIE
                     ITGHKKKSYVLLWSSQPTDYGKKLIRIDGYTRSNISVGIDDKVTISKVNNVKKAEQVI
                     LSPTEELNIVGLEEHLPELLEGRVVAKGDTIPLNIMGRKIGFVITSTTPLDAASLIDS
                     QTEFIIGAVPKASAKGVPRVTYEDIGGLKNEVQKVREMIELPLRHPEIFERIGIEAPK
                     GVLLYGPPGTGKTLLAKAVANETNANFYSIGGPEIMSKFYGESEERLRETFKQAQENA
                     PSIIFIDEIDSIAPKREEVSGDVEKRVVSQLLTLMDGIGSRGKLVVIGATNRPDALDP
                     ALRRPGRFDREIEIGIPDQEGRFDILQIHTRGMPLTEDVNLESFAKITHGFVGADLEA
                     LSKEAAMRSLRRILPEINMEQTKIPVEVLNKIKITHKDFEDALKDVQPSALREVHVQR
                     PNITWDQIGGLNEVKSELAEAIEWPL"
     gene            complement(1468..1998)
                     /gene="hsp20"
                     /locus_tag="VHF44_02450"
     CDS             complement(1468..1998)
                     /gene="hsp20"
                     /locus_tag="VHF44_02450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp20"
                     /protein_id="HEX2124443.1"
                     /translation="MWSDPWKFSRGILEDIDKEFAEAENMLNRMFRTVREMEPSAIAN
                     FPYYYGYQITVGPDGKPKVREFGNVRPAARGLVEQSGIREPLVDTAINEKENALIITA
                     EMPGVTKQDIKVNVADEFVSIHAEQGEKKYHTDIPVNVQLDDSSAKATYSNGILELKI
                     KLKQAPKLKGKEVKVE"
     gene            2104..2790
                     /locus_tag="VHF44_02455"
     CDS             2104..2790
                     /locus_tag="VHF44_02455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124444.1"
                     /translation="MTASGPHAIREVLSSNTLYLQALKSGIANYTALAQRIKSDVETI
                     VGSQVNVGTIVVAIKRFADVLEKEKQDEEKKPSNTHPMNGARMSLTGSIIDIDFDREL
                     DELSNILDEVFEKESGYNLFQTNKQLRLFTEDIDEIRNIVSTASKKFDFKLKEGLSKI
                     TINFPSSTSYNNEQTPYNDVLSLVSDVLYNNQIPLYNAFFAPNETVLILKNKDAARAY
                     ELLRAKITKQ"
     gene            complement(2997..3209)
                     /locus_tag="VHF44_02460"
     CDS             complement(2997..3209)
                     /locus_tag="VHF44_02460"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124445.1"
                     /translation="MNKISDLINTWIPLVIISAGIPLTIGSLLSMPQDKVIITSILAA
                     VVAIIGFLLRPYFESEKEQKPQKNRY"
BASE COUNT          981 a          638 c          521 g         1183 t
ORIGIN      
        1 agaggccatt ctattgcttc cgctaattct gattttactt catttagtcc tccaatctga
       61 tcccacgtaa tgtttggcct ctgtacatgt acttcacgta atgctgaggg ctgaacatcc
      121 ttaagagcat cttcaaaatc cttatgagta attttaattt tatttaatac ctccactgga
      181 attttggttt gttccatatt aatttctggc agtattcttc gtagagatcg cattgctgcc
      241 tctttactta atgcttccag atctgcacct acaaatccat gagtaatttt ggcaaatgat
      301 tctagattta catcttctgt tagtggcatt cccctagtgt gtatttgtag aatatcaaat
      361 ctaccttctt gatctggtat accgatctca atttctctat caaatcttcc aggacgtctc
      421 aatgccggat ctaaagcatc cggtctatta gtagcgccaa ttactacgag tttgccacga
      481 gatcctatac cgtccatcag tgttaggagt tgcgatacta ctcttttttc tacatctcct
      541 gatacttcct ccctctttgg agcaatagaa tctatttcat caatgaaaat aatactcgga
      601 gcattttcct gagcttgctt aaatgtttcc ctcaatcttt cttcgctctc gccgtagaac
      661 ttgctcatta tttcaggtcc accaatagag taaaagtttg cgtttgtttc attagcaaca
      721 gcttttgcta gtaatgtttt tcctgttcct ggaggaccat agagcaaaac acctttcggt
      781 gcttctattc ctattctctc aaatatttca ggatgtctta acggaagttc aatcatctct
      841 ctaacctttt gtacttcatt ctttagacct ccaatatcct cataagtcac tcgaggaact
      901 cccttagcag atgcttttgg tactgctcca attatgaact ctgtttgact gtcgattaaa
      961 gatgctgcat ccaacggtgt agtactagta attacaaaac caatttttct tcccattata
     1021 ttgaggggaa tagtatcacc tttcgcaaca actcgacctt caagcagttc tggaagatgt
     1081 tcttccaaac ctacaatatt gagttcttct gtgggagaaa gaattacttg ctctgctttt
     1141 tttacattat tgactttgct aatagttact ttgtcatcga ttccaacaga gatgttgcta
     1201 cgagtatatc catcaattct tattaatttc ttaccataat cagttggttg actagaccag
     1261 agtaaaacat aacttttctt tttatgacct gtaatttcaa ttacatcacc tgttgctaaa
     1321 tttaattcct ccataacttt tggatctatt aaagctattc ctctaccaac aaattttggg
     1381 ttggtctcgg ctacttttaa tgttaaatta ttatcgttat ttttcataat tttgttgtca
     1441 cctacttaaa aaaaataatt ggagttttta ctccaccttt acttccttac cttttagttt
     1501 tggagcttgt tttagtttga ttttcagctc caatatgcca tttgagtatg ttgcctttgc
     1561 agaggaatca tctaactgaa cgtttacagg tatgtctgta tgatatttct tctctccttg
     1621 ctctgcatgt atagatacaa attcatccgc tacattgacc ttgatgtctt gctttgtcac
     1681 acctggcatc tctgctgtaa taatcaatgc attttccttc tcattaatag cggtgtctac
     1741 caaaggttct cttattccgc tctgttctac tagtccgcga gcagctggtc ggacatttcc
     1801 aaattctctt acctttggtt tgccatcagg acctactgtt atctgatagc cataataata
     1861 ggggaaattg gcgatagcag atggttccat ttctcgaact gtcctgaaca ttctgttcag
     1921 catattttct gcctctgcaa attccttgtc gatatcttct aaaattcctc tactaaattt
     1981 ccatgggtca ctccacatat ttgatttcac cttacgttat gtaataccta ttacaatata
     2041 tatattttac ggcaaagagt aatatttatt accaaataag ataaatataa caatatgtat
     2101 aggatgacag catcaggtcc ccacgccata agagaagtat tatcttctaa tactctctat
     2161 ctgcaagccc tgaaatcggg aattgctaat tatactgcat tagcacaaag aattaaatct
     2221 gatgtagaga caatagtagg ttcccaagtt aatgtaggta caatagtcgt agcaatcaaa
     2281 agatttgcag atgtattaga aaaggagaaa caagatgaag aaaagaaacc tagcaataca
     2341 catcctatga atggagctag aatgtctctg acaggcagta ttattgacat cgattttgac
     2401 cgagagcttg atgaactttc aaatatacta gatgaggtat ttgagaaaga aagtggttat
     2461 aatctttttc agacaaataa gcaacttaga ttatttacag aagatattga cgaaatcaga
     2521 aatattgtct ctactgcttc aaaaaaattt gattttaaat tgaaggaagg actatcaaag
     2581 attactatta actttccttc ctctacctct tataataatg aacagacccc atataatgat
     2641 gtgctatcat tagtatcaga tgttctatat aataatcaga ttccgctcta taatgcgttt
     2701 tttgcaccta atgaaacagt gcttatatta aaaaataaag acgctgctag agcttatgaa
     2761 ttattgagag caaaaataac aaaacagtaa taacgtaaat aaattgataa cgaattgaac
     2821 ctttttatca gattattaat tttaaaggtg tcttgttatc gttacctata aaggatatga
     2881 ttccgtttaa agtctatgtc atcatcaatg aagaaacagt agaaagatat ttgactgtta
     2941 tatagagaaa tgactatggc gagctattat aaaaaaatat aatgatatta tctactttag
     3001 tatcgattct tttgaggttt ttgctctttt tctgattcga agtaaggtct cagaaggaat
     3061 cctataatgg ctacaacggc tgcaagtata gatgtaataa taactttgtc ttgtggcata
     3121 gacaacaatg aaccaatcgt cagtggaata cccgcagata ttatgactag aggtatccaa
     3181 gtatttatta aatccgagat cttgttcata ttcaattagt gtctctttat ttagttgtta
     3241 ttcaaacttt tgtataatgt tttctatatc tgcttatctt ataactactt gtaaacaaga
     3301 attgtcgtat attctaacgc gct
//
LOCUS       DATABJ010000157         3364 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_106245, whole genome shotgun sequence.
ACCESSION   DATABJ010000157 DATABJ010000000
VERSION     DATABJ010000157.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3364)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3364)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3364
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_106245"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(278..703)
                     /locus_tag="VHF44_02465"
     CDS             complement(278..703)
                     /locus_tag="VHF44_02465"
                     /inference="COORDINATES: protein motif:HMM:TIGR00149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="secondary thiamine-phosphate synthase enzyme
                     YjbQ"
                     /protein_id="HEX2124446.1"
                     /translation="MMKSKTEYLTFNTPTRRAFVNITSNIRKIVEESGIKEGLCLVNA
                     MHITASVFINDNESGLHQDFDKWLERLAPHVPASDHYRHNETGEDNADAHLKRQIMGR
                     EVIVAITNGKLDFGPWEQIFYGEFDGRRNKRVLVKVIGE"
     gene            1042..2253
                     /locus_tag="VHF44_02470"
     CDS             1042..2253
                     /locus_tag="VHF44_02470"
                     /inference="COORDINATES: protein motif:HMM:NF016765.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124447.1"
                     /translation="MPTANEIKKQLQENWIQFLNANSAKLSLKTLSGSTPPSVFVGRF
                     GYPKVKVGPMVPPLHGDTTILDMPEIWLGKSIEQIINYRLSLVRGVSDIDIHTTSGKY
                     IESLQELAMSSKSAESEVTFEKKPIAEIKQEKDLALDTESAPFGPVAPLKSFKTSSSL
                     SVDQRLESAYYDKDLRAAEAVVHLYQKGLEISKIHRVLSMGMLGLQKNRRLVPTRWSI
                     SATDDIISASLIKDIDFCARIDFFEVYKYSHLGNHYTIILIPDDVWSFEMQEAWFDNN
                     GNIGIGIDFEDAKGLDHYPSIAGAYFAARLGVAEHLFKIKRKAAALVLREIHPEYVMP
                     VGVWQIREGIREALKGQRNHFDSFEKALSFSCINSSVNKKEWIRNSKIYRNMREQMRI
                     TSFFSNNNNLS"
     gene            complement(2851..3129)
                     /locus_tag="VHF44_02475"
     CDS             complement(2851..3129)
                     /locus_tag="VHF44_02475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124448.1"
                     /translation="MSEIKDDLKDVGERMKADMKKGSNKIQTESQDQLTEQKNGDKEI
                     SDRESDRVKQSPSTEIPSDEIQTKIKSNKQTSTTTKNDNEPVSQSSES"
BASE COUNT         1130 a          561 c          549 g         1124 t
ORIGIN      
        1 tgaagaaaag aagaagtaga catattataa ttattcctaa tggttatgaa ttattaaagc
       61 tgatgatata tctatagata accagtgata aaatatccta tgccagaaca tagaagagaa
      121 atcattaaca gataacaaaa acaaaggtaa atcagagtca cttcaaaagg aaaattatgt
      181 gtaaaaaaat tgagtaacga aattaagtca aatctatctt atacccaatg gaacccgcac
      241 aaatcttgtc ctcatacttc aaatcgatag atctattcta ttcaccgatt acctttacta
      301 atactctttt atttctacga ccatcaaatt ctccataaaa tatctgctcc catggtccaa
      361 agtctaattt tccatttgtg atagcaacta taacttcacg ccccattatt tggcgcttta
      421 agtgcgcatc tgcattatct tctcctgttt cattatgtct gtaatgatca ctagcaggaa
      481 catgaggcgc caatctttct agccatttgt caaaatcctg atgcaatcca ctttcattat
      541 catttataaa aacactagcc gtaatatgca ttgcatttac gagacaaagt ccttccttta
      601 ttccactttc ttcaactatt tttcttatat ttgaagtgat attaacaaac gcacgtcttg
      661 taggagtgtt aaatgtaaga tattctgttt ttgatttcat catctttgaa ggaatcaaca
      721 gaggtgtttg ttataatctt agctcaacct actgctacaa tagtgtttgt attttgcttt
      781 actaattagc taaatgtttc ttcattgcgc cgatttgtag tcagttatat ttttggattt
      841 acatattgct aaaatcccag attgagaaga acttgattaa tttccatcag gactgagtat
      901 catttcttgc attgtcataa ccagaagaca aattccgtcc aacttgccca ttcgatgtga
      961 cgacaagaga ttttctaaag gtagcactta ccatgcatat attcaaatta ttctgtattg
     1021 aaaaaacacc tagataaggc tgtgccaaca gctaatgaaa tcaagaagca gttacaagaa
     1081 aattggattc agtttcttaa tgcaaattct gccaaattat cattaaaaac actttctggc
     1141 tcgacaccac cttcagtttt tgttggccga tttggatatc ctaaagtaaa ggtaggacca
     1201 atggtaccgc cattacatgg cgatactact atactagaca tgccagagat ttggcttgga
     1261 aaaagtattg aacaaattat taactatcgc ttgtctcttg taagaggagt atcagatata
     1321 gatatccata ccacatctgg aaagtacata gaatctttac aagagctggc tatgtcttca
     1381 aaatcagctg aaagtgaagt aacatttgaa aagaaaccta ttgcagagat aaagcaagaa
     1441 aaagatttag ctctagatac tgaatctgct ccattcggtc ctgttgcccc tttaaagagt
     1501 ttcaaaactt cttcttcact ttcagtggat caaaggttag aaagtgctta ttatgataag
     1561 gatttacgcg cagcagaagc tgtagttcac ctttaccaaa aaggacttga aattagcaag
     1621 attcatcgag ttcttagtat gggaatgtta ggattgcaaa aaaacagaag attggtgcct
     1681 acgagatgga gtatctctgc cacagatgat attatttctg ctagtttgat aaaagatata
     1741 gatttctgtg caagaataga tttctttgaa gtatacaaat attctcactt aggtaaccac
     1801 tacactatca tattgattcc agatgatgtt tggagctttg aaatgcaaga agcatggttt
     1861 gacaacaacg ggaatatagg aattggcata gatttcgagg atgctaaggg tttagatcac
     1921 tatccttcta tagcaggagc atattttgct gctagattag gagtagccga gcacttattt
     1981 aaaataaaac gaaaagcagc agcattggtt ctaagagaaa ttcatccaga atatgtcatg
     2041 cctgtaggag tatggcagat tagggaggga atcagagaag cacttaaagg tcaaagaaat
     2101 cattttgaca gttttgaaaa agcattatct ttctcatgta taaattcgtc agtaaataaa
     2161 aaagaatgga ttagaaatag taaaatctac agaaacatga gagaacaaat gagaataacc
     2221 tctttcttca gtaataataa taatttatca taattcactt tatctagcca tctaagctaa
     2281 ctgaatgcga tagttcataa aatgtcaata actagctcgt agaatacctc cactcatttt
     2341 atgtatatat attcaagtaa atattgctag ccaacaatgt ataaaatctg tatttggcaa
     2401 aataataata ataatatcta catcctttgt tagcagatgt gtaggataga agatttcctt
     2461 gttctcaaaa tctgcaaaag gagaacctta tattgaaaag atttgtgaga acccatctat
     2521 aatatcataa atagaatacc aaaccgataa tatagtcgct cttattcctg tgatgacacg
     2581 cacaggcaat gtttttgaat aggtaatggc aagaatatta tcatcaatat tctttacttt
     2641 tgtaatgaga gtggctaatc aataatttct tagaattctt ctgtaacgat ataatcagca
     2701 tatacatgct ctaaaaagct tttgtttttc cgactaacgg tcatcattat tctctttggt
     2761 cctaaattac tttatctttt tttgcttttt cttccactag tctttactgc tttattgaat
     2821 cattaaaata tttcatttct tattttatca ctacgactct gaactttgag atacaggttc
     2881 gttatcgttt tttgtagttg tagaagtttg cttattcgat tttatttttg tttgtatttc
     2941 atcagaagga atttcagtgg aaggagattg cttaactcga tcggactctc tgtcagatat
     3001 ttctttatcg ccattttttt gttctgttag ttgatcttga ctttcagttt gaattttgtt
     3061 gcttcccttc ttcatatctg ctttcatcct ttctcctaca tcttttaaat cgtctttaat
     3121 ttcagacacg gtaatattac attggatagt atcaaatata aaaatagagc gattgagtat
     3181 gtaagcaggt aactatttga tgaagtatat catttaatgt attttcagag gaaaaaaaga
     3241 tagaaaatca aaataagagt ttttactaca aagacgaaga taatgtgaaa aattacatgg
     3301 cgtcaagttg aaggcatatt ctagcacatt actactccaa aaaagggata tgataagagc
     3361 aagc
//
LOCUS       DATABJ010000158         1516 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1411724, whole genome shotgun sequence.
ACCESSION   DATABJ010000158 DATABJ010000000
VERSION     DATABJ010000158.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1411724"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..365)
                     /locus_tag="VHF44_02480"
     CDS             complement(<1..365)
                     /locus_tag="VHF44_02480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124449.1"
                     /translation="MGHATVEWVYVGVVISLLTYVGAESWNVERVLEHAPQEAEIIKV
                     TGQQWFWTFEHADGTQEIGELHVKKGVPYRFEIISQDVIHNFNVPDFTILMDAVPGRV
                     NSVWNMFDQTGEYLIQCRE"
     gene            complement(365..667)
                     /locus_tag="VHF44_02485"
     CDS             complement(365..667)
                     /locus_tag="VHF44_02485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124450.1"
                     /translation="MSSETGVYMLSHYSKSWLLLTIASLVTISLLSLAEYALAQESAE
                     DYVIRRVEIWGTFYRLMIIAFVVGAVVQGTIVYIIWRFRESNKKNQPKGPMESAHH"
     gene            complement(701..1330)
                     /locus_tag="VHF44_02490"
     CDS             complement(701..1330)
                     /locus_tag="VHF44_02490"
                     /EC_number="3.1.3.-"
                     /inference="COORDINATES: protein motif:HMM:NF012521.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEX2124451.1"
                     /translation="MPLVVIMRHGQADNNVNRILVGRYIESHLTEYGKQQVSDTAKYL
                     KNMPIEEVFVSPVTRTIETAKIVCKILGKKYKIDERLYEIDLGKLVGMKYDDIIHKYG
                     NLFLKFYTENDETLIRHGVETFTSVKQRIKHLLDEIAEKHKDKDKNILMITHLDPIKA
                     VISILLDLKPEVLYQWHMRNAALTILNHEKKIYSLYAVNVMGLHRYMNE"
BASE COUNT          462 a          294 c          241 g          519 t
ORIGIN      
        1 tattccctgc actgaatcaa atattcgcca gtttgatcaa acatattcca tactgaatta
       61 actctgcccg gaacggcatc cattaagata gtaaagtcag gaacgttaaa gttatggata
      121 acatcttggg aaatgatctc aaatctatat ggcactccct tttttacgtg tagctccccg
      181 atctcttgtg ttccgtctgc gtgttcaaaa gtccagaacc attgctgtcc agtaacttta
      241 ataatttcag cttcttgggg tgcatgttcc agaactcttt ctacattcca tgattctgct
      301 cccacatatg taagaagact aattacaaca ccaacatata cccattctac tgtagcgtga
      361 cccattaatg atgtgcactc tccattggtc ctttaggctg atttttctta ttagattcac
      421 ggaacctcca aattatataa acaatcgtac cttgaacaac ggcaccaaca acaaatgcta
      481 ttatcatcaa tctataaaac gtgccccata tctctactcg tctaataaca taatcttctg
      541 cagattcttg agcaagagca tattcagcaa gacttagaag agatatagtc actagggaag
      601 caatcgtcaa gagtaaccac gactttgaat aatgtgataa catgtagacc cctgtttctg
      661 agctcaattg agcttcacat ctaatttaag gtttttggaa ttactcgttc atatagcggt
      721 gtagacccat tacattcact gcatatagag agtaaatctt tttctcatga tttaatattg
      781 tcagcgctgc attacgcata tgccattgat aaagcacttc aggttttaga tcgagcaaga
      841 tagagataac ggcttttatt ggatctaggt gagtgatcat tagaatattt ttgtctttgt
      901 ctttatgctt ttctgcgatc tcgtcaagga gatgttttat tctttgtttt acagaggtaa
      961 aagtttcgac tccatgtcta attaatgtct catcattttc agtgtagaat tttagaaata
     1021 ggtttccgta tttgtgaatt atatcatcat atttcatccc aacaagctta ccaagatcaa
     1081 tttcatagag tcgctcgtct attttgtatt tctttcctag tattttacaa acgatttttg
     1141 cagtttcaat agtgcgcgtt acaggactca caaagacttc ttctattggc atattcttta
     1201 gatatttcgc agtatcagaa acttgctgct ttccgtattc tgtaagatgt gactcgatat
     1261 atctacctac taggattcta tttacattat tgtctgcctg cccatgacgc atgattacta
     1321 caagtggcaa ataaaatcat taaagttcag ctagataaga atattaattt tcgcaaaact
     1381 aactagatga taaatccaat acatcttttt gtctattaga ttttaaataa aaataaaata
     1441 cattattcag atcgtttgat aagattaata tccattattc acgaaaggaa ttgaacagta
     1501 tatgagagtt ggaata
//
LOCUS       DATABJ010000159         6191 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1645350, whole genome shotgun sequence.
ACCESSION   DATABJ010000159 DATABJ010000000
VERSION     DATABJ010000159.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6191)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6191)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6191
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1645350"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(163..642)
                     /locus_tag="VHF44_02495"
     CDS             complement(163..642)
                     /locus_tag="VHF44_02495"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124452.1"
                     /translation="MRHDYLAQGKLMPKLETWVALGSLGMCIMFIALILSFFNFLVGP
                     KGNGPDVYVDPTGVMIQLISISGAPSLILAGTVFGLTKSYCATRAAIILITTGIIMIS
                     GIITASTLTLKINEQFIVGGIDVIHYIFTVAGMGFSILGVYLFKISKKYQNLEDEIH"
     gene            complement(643..1674)
                     /locus_tag="VHF44_02500"
     CDS             complement(643..1674)
                     /locus_tag="VHF44_02500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose-1-phosphate uridylyltransferase"
                     /protein_id="HEX2124453.1"
                     /translation="MGYLRKDYVLDKFVIVPKLTDETIPNEKSSGARCPYCPGNEYMT
                     EPSLISLVAKDGMLQRLSDSEENVVGDWCVRVFQSSTPAVTKNSTTIYTDKPLYSEPA
                     YGYHQVVVASPEHDQKLSQISVDQWANVLLVIQDRVRWLYTQKSVSYVCIFVNSGHMA
                     GTPYDHPHLNVVTFSAIPPTIELEADASHKYMNENGICPACSIISIESSGPRQILDTE
                     SFLSFSPWAPTYPYEFWIYPKRHTTAFSKITQKEINDLALMLRATLGGMSKALKDAPF
                     NLVFHLAPEKKNSRQIHWHIEVYPQLNIWSGLERGFGVYINDILPEKSAEFLGSSCRR
                     ELAELVGII"
     gene            complement(1833..2876)
                     /locus_tag="VHF44_02505"
     CDS             complement(1833..2876)
                     /locus_tag="VHF44_02505"
                     /EC_number="1.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II glyceraldehyde-3-phosphate
                     dehydrogenase"
                     /protein_id="HEX2124454.1"
                     /translation="MAKIFINGYGNIGRRLASALSLDKEIQFVGIAKYTADEKTKEAL
                     ENRFNVYVPKDIINKFKEKNYDIAGTLTEAIDESDLIIDAAKEGTGYDNKKNLYEPMN
                     KSAIFQGGEERHGDRSVAEMIHNSRVNYDKALGRKYVIQGSCNVSGMGRIIQPLIENF
                     GDEIRRFDVSLIRRWADLEDSKEVKDSIEWDKNPHHQDDVKDFIPSVNLYVDAFKVPS
                     RMMHLHHMLIHFKEKAPPKDVVIETFRKEFGVAILNSAKGTADIRKKAFQLAFQHGDT
                     NMIHIHTEVVKVQDDLLKISYSDDQTGMVIPENYMLVQSMIHGCSRGEAIKKTDNLFQ
                     ITRKRNLLEQEFR"
     gene            3194..3781
                     /locus_tag="VHF44_02510"
     CDS             3194..3781
                     /locus_tag="VHF44_02510"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004049 - anthranilate synthase activity
                     [Evidence IEA];
                     GO_function: GO:0046820 - 4-amino-4-deoxychorismate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEX2124455.1"
                     /translation="MKILIIDNYDSFVYNLAQILGELHSQPLVTRNDKITVKSINRMD
                     PDAIVISPGPGHPADRKYFGVCSDIITNFGSKIPILGVCLGHQGIVDAFGGRVINAKI
                     ARHGKTSYIRYNSDRLFENIDNPFKATRYHSLVVDSKTIPNCLEVTAWALDDGEIMGI
                     RHRQYLVEGVQFHPESVLTKEGKKILFNFVSIVKR"
     gene            3778..4854
                     /gene="trpD"
                     /locus_tag="VHF44_02515"
     CDS             3778..4854
                     /gene="trpD"
                     /locus_tag="VHF44_02515"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: protein motif:HMM:TIGR01245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004048 - anthranilate
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0000162 - tryptophan biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEX2124456.1"
                     /translation="MSTDNFDIRPILLKLVSRSALSEEEVHQTVNSILEGKLSEAAIA
                     SFLVAMSMKGETSEEIRAILQTIKRHAIKISPKITGPLVDTCGTGGDAIKSFNISTAA
                     AIVASSAGMRIAKHGNRSVSGFCGSADFLDYIGFDLQSSPEKVCSAIENIGIGFLYAP
                     NFHPALRRVASARNIIGIRTVFNIAGPLSNPCTNITGQVIGVFASYLLEPIAHAIQYS
                     GINDAMIVHSHDGLDELSNTCENDIFWISDNQIKRVILHPKMLNMKVAKQSQIIINSK
                     EQSLRDTLQVIFGVASQEKEDIVVLNASAALVISKVARDFQEGVDIARSLIKNGKPQQ
                     KLRELVRWCGKEERLESAIKNFIP"
     gene            5478..>6191
                     /locus_tag="VHF44_02520"
     CDS             5478..>6191
                     /locus_tag="VHF44_02520"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124457.1"
                     /translation="MTETINLTTTDQNLSARIENLGWDDLINLKRRLSGRVKELSEKI
                     IDIERNRFRSINNNIHVEKNNLNNLLERTKQIRYEVQSKNSQLLSISEKISQSKDFLS
                     MMESRVSSDAEGHLFQSLDMLQKALDEKRYKSPREKNEILSSIKETQMKIEALKAVRI
                     IKDQMREFDKESQNLRNSLKLLDEEHRSLQRKISEINNIIDHLFDLKRRLPEEREIYL
                     KEYNEDLLQLEKINGRLDYM"
BASE COUNT         2031 a         1112 c         1083 g         1965 t
ORIGIN      
        1 gtgcttgttt ataaaaatca ggtttggttc caacgacgat ggataagaca gggctctttt
       61 gtgatttagc caaactaaaa atattatcta acatctgctt tgatatcttg attggaagca
      121 gatttctcga taaattgata tctaattgat tatgtttctc attcaatgaa tttcgtcttc
      181 taaattttga tatttttttg atattttaaa tagatataca cctagaattg aaaagcccat
      241 accagcgact gtaaaaatat aatgaattac atctattcca ccaactatga actgttcatt
      301 aattttcaga gttaacgtcg atgcggtaat gatgcccgat atcataatta tccctgttgt
      361 tatcaaaatg attgcagcac gagttgcaca gtaagatttt gtaagtccaa aaacagtacc
      421 tgcaagaatt aaactaggtg ctcctgatat cgaaatcaat tggatcatta ctcctgtagg
      481 atcgacgtaa acgtctggac cattaccttt tggtcctaca agaaagttaa aaaatgataa
      541 tatcagagct ataaacataa tacacattcc taatgagcca agggcgaccc aggtttctaa
      601 ttttggcatt aactttcctt gtgctaagta atcatgtcgc acctaaataa ttccaacgag
      661 ttcagctaac tctcttctac atgaggaacc taaaaattct gcggattttt ccggtagtat
      721 atcattaatg taaactccaa aacctcgctc taatcctgac catatattaa gttgcggata
      781 aacttctatg tgccaatgaa tctgacgact attctttttt tctggagcca aatggaaaac
      841 cagattgaac ggagcatctt taagtgcttt cgacattcct cctaaagtgg cgcgtaacat
      901 taatgccaga tcgtttattt ctttttgagt tatttttgag aatgcagtag tatgtcgctt
      961 tggatatatc cagaattcat acggataagt aggcgcccac ggagagaagg aaaggaagct
     1021 ctctgtatct aatatttgtc ttggcccact cgattctata gaaattatac tgcaggcagg
     1081 acaaattcca ttttcattca tatatttatg agaagcgtcc gcttctaact caattgtcgg
     1141 cgggatggca gagaaagtta ctacatttaa atgaggatgg tcgtacgggg ttcctgccat
     1201 atgtccgcta ttgacaaata tacaaacata agatacactt ttttgtgtgt ataaccatct
     1261 aaccctatct tggataacca gcaagacatt tgcccattgg tctacagata tctgagataa
     1321 tttctgatca tgctcaggtg aagcaacaac gacttgatga taaccgtaag caggttcgct
     1381 atagaggggc ttatcagtat agattgtagt agaattcttt gttacagcag gagtactact
     1441 ttggaagacc ctgacacacc aatctccaac aacgttttct tcactgtcag acaagcgttg
     1501 aagcattcca tcttttgcaa ctaaagaaat caaggagggc tctgtcatat actcattgcc
     1561 tggacaataa ggacacctag caccagaaga tttttcattc ggtattgttt catctgtgag
     1621 tttgggaact atgacgaact tgtcaagaac ataatccttt cgtaaataac ccaaattatt
     1681 ctctctgcct aaacctcggg caatttcctt taattaaagc ttctgtattg attagagctg
     1741 tttgactgac taaaatgctc tgatatatgt attggagtgt taaaatcgat tgtaacagta
     1801 aaaaatgatg atttattatc ttcattacta ttttaccgga attcctgttc taagagattt
     1861 ctttttctcg tgatttgaaa taaattatct gtctttttga ttgcttctcc tcggctacat
     1921 ccatgaatca ttgattgaac aagcatgtag ttctcaggaa tcaccatccc agtttgatca
     1981 tctgagtatg aaatctttag aagatcgtcc tgaaccttga ccacttctgt atgaatatga
     2041 atcatattag tatcgccatg ttgaaatgct aattggaaag ctttttttct gatgtctgct
     2101 gttccttttg ctgagttcaa tatggctacg ccaaactcct tcctaaatgt ttcgattact
     2161 acatccttag gtggagcctt ctctttaaaa tgtatcaaca tatgatgtag atgcatcatc
     2221 ctagacggaa ctttaaaggc atctacataa agattaactg aaggaataaa atctttgacg
     2281 tcatcttgat ggtgaggatt tttatcccac tcgatagaat cttttacttc ttttgaatct
     2341 tcaagatcag cccatcttcg gataagggaa acatcgaacc ttctgatttc atcgccgaaa
     2401 ttttctatta atggctgtat aattcttccc atgccagaaa cgttacagct cccttgaata
     2461 acatactttc tgcctagcgc cttatcataa tttactctgg aattatgaat catttcagct
     2521 accgatctgt caccgtgtct ttcttcacca ccctgaaaaa tagcactctt gttcataggc
     2581 tcataaaggt ttttcttatt atcgtatcca gtaccctctt tcgctgcatc aataattaaa
     2641 tcgctttcat caattgcttc tgtcagcgtg ccagcaatat cgtaattttt ctctttgaac
     2701 ttgtttatga tatctttagg aacataaaca ttaaagcgat tttctaaagc ttctttagtt
     2761 ttctcatctg ccgtatattt tgctattccg acaaattgaa tttctttatc aagagaaagt
     2821 gcggaggcaa ggcggcggcc aatatttcca taaccattta taaatatctt agccaaatct
     2881 atccctaaat atgatagaat ttaaacatgc cttacctaat tttaatattt accgtcattt
     2941 aattttaact tttaaaagca cattgtttta gtatattcta tctagataca acctggttat
     3001 ttatgatctc aggctcttct ctattatact atatcgtatt ggaagaacat ttatgattaa
     3061 caaaccttat cttatatatc tttatataac aaaagacaat acaattgcag cttatggaaa
     3121 gggtcatacg gtttaaatta tgttatattt catctatagt aagaatatcc taataataga
     3181 ttgatgatgg tatttgaaaa ttctcattat agataattat gactcgtttg tatacaacct
     3241 ggcccaaatc ttgggagagt tgcatagtca acccttggta actcgaaatg ataagatcac
     3301 agttaaatct attaacagaa tggatccaga tgcgatagtc atatcaccgg ggccaggaca
     3361 cccagctgat aggaaatatt ttggagtatg ttctgacatt ataactaatt ttggttcaaa
     3421 gatacccatc cttggagtat gtcttggaca ccaaggaata gtggatgcgt ttggcggaag
     3481 agtaataaat gccaaaatag ccaggcatgg aaaaacaagt tatattagat acaattcgga
     3541 tcggctattc gaaaacatag ataatccttt taaggctact cgttaccatt cattggtagt
     3601 tgattcaaaa actattccta attgtcttga ggtgaccgcg tgggcattgg atgacggcga
     3661 aataatggga attagacaca gacaatactt agttgaagga gtacaatttc atccagaatc
     3721 agtgttgaca aaggaaggta aaaaaatact ttttaatttt gtttctattg ttaagagatg
     3781 agtactgaca atttcgatat tcgtcctata cttctaaaac tagtttcaag atcagcgttg
     3841 tctgaagaag aggttcatca aactgtaaat tccattcttg aaggtaaact ttctgaagct
     3901 gccattgcat ccttcttggt cgctatgtct atgaaaggcg aaacatctga agagattaga
     3961 gctatccttc aaacaatcaa gcgacatgca ataaaaatct cacctaagat aaccggccct
     4021 ctagttgata cctgtggcac cggaggagat gcgataaagt catttaacat tagcactgct
     4081 gctgcaatag tggctagctc agcaggtatg aggatagcaa aacatggaaa ccgttcagta
     4141 tcaggattct gcggaagtgc agactttcta gattacattg gttttgactt gcaatcatct
     4201 cctgagaagg tgtgtagtgc tatagaaaat atcggaattg gttttttgta tgctcctaat
     4261 tttcacccag ctctaagaag ggttgcctca gctagaaata taattggtat aaggactgtg
     4321 ttcaatattg ctggcccttt aagtaatcct tgtactaata taacaggaca agtcatagga
     4381 gtttttgcat catatttgtt ggaacctatt gctcacgcta tacaatatag tggcataaat
     4441 gatgccatga tagttcattc tcatgatggc cttgatgaac tctctaatac ttgcgaaaac
     4501 gatatttttt ggattagtga taatcaaata aagcgagtca tacttcatcc aaagatgctc
     4561 aatatgaagg tcgcaaaaca aagccagatc ataatcaatt cgaaagaaca atcacttcgg
     4621 gatacgctgc aggtcatatt cggcgtagcc agtcaggaaa aagaagacat agttgttttg
     4681 aatgcctccg ctgctcttgt aatttcaaag gttgctaggg attttcagga aggagtagat
     4741 atcgcaagat cattaataaa aaatggaaag cctcagcaaa aattacgaga actagttaga
     4801 tggtgtggaa aagaagaaag gttagaatca gcaataaaga attttatacc ctaatttttc
     4861 tttataaata tgaacttctc tctattttat tgtcttgtca cctgataaca atttctgtta
     4921 cacatgctag aattagactc actggcattt tttcttttaa tagtaagacc aataaaccag
     4981 ataatacttt atatgaaatt acatacaatg gaatttgaaa agaagcacca agtagttaag
     5041 agtagttaca taacttgaaa gtggctagtc ctatactggc atactttgaa tacatgaaga
     5101 aataacacat cattttgact ataatggcaa gtcaaatgtt acttgttctc aaagtcggtt
     5161 catattagaa tatcagtcag aattcacgtc cagtagatta aaactctgcg gactccgtga
     5221 ctcagcaaag acatatggcg gagtaaagac gcgatataag ttagcatcta acaaagtccg
     5281 tttagtcgac agcaataatt attaaaccta atttttgaac accgttttag cattaagaga
     5341 acatatataa cgaaataaaa ataatctttc aatgagtagg cttttgaaca tattaaatat
     5401 caattacctt gtaaaaaata caagtatttc ttttgtatat ttatcagtat acttttatgt
     5461 aatatacacc tcacataatg acggaaacaa ttaatttgac tacaacagat caaaatctat
     5521 ctgctagaat agaaaatcta ggatgggatg atctaattaa tttaaagcgt cgcttatcag
     5581 gccgagtaaa agaactaagc gagaaaataa ttgatattga gaggaacaga tttcgatcca
     5641 taaataataa tatacacgtc gaaaagaaca atctcaataa tttgttagag cgaactaaac
     5701 agattagata tgaagttcaa tccaagaatt ctcagctact ttcaataagt gagaagattt
     5761 cccaatcaaa agatttcctt agcatgatgg aatctagagt atcctctgac gcggaaggac
     5821 atttgtttca atcacttgat atgctgcaga aagcactcga cgaaaaacga tacaaaagtc
     5881 cacgagaaaa gaatgagata ctttcttcca taaaagagac tcaaatgaaa attgaagcac
     5941 taaaggcagt ccgaattatt aaagatcaga tgagagaatt tgataaagag tctcaaaatc
     6001 tcagaaattc attaaaatta cttgatgagg aacatcgatc attgcaacgg aagatatcag
     6061 aaattaacaa tattattgac catctctttg atttgaaacg gcggctccct gaggagcgcg
     6121 aaatttacct caaagaatac aatgaagatc tattacaatt agaaaaaatc aatggacgcc
     6181 ttgattatat g
//
LOCUS       DATABJ010000160         6476 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_108624, whole genome shotgun sequence.
ACCESSION   DATABJ010000160 DATABJ010000000
VERSION     DATABJ010000160.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6476)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6476)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6476
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_108624"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1359
                     /gene="aspS"
                     /locus_tag="VHF44_02525"
     CDS             <1..1359
                     /gene="aspS"
                     /locus_tag="VHF44_02525"
                     /EC_number="6.1.1.23"
                     /inference="COORDINATES: protein motif:HMM:NF003483.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0004815 - aspartate-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006422 - aspartyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA(Asn) ligase"
                     /protein_id="HEX2124458.1"
                     /translation="IRFRYLKLSNLVREEELGQWRRTHYSAEINSSLDNKEVIIMGWV
                     SSIRDHGNILFIMIRDRYGDVQVIAKKSECTDEVLEQIRQIKEHTALAVRGTIRSQRK
                     APNGAEVIPLELKIFSISKKAAPFMVQDKTSVGIDTRLDLRALDLRRNILQSIFHIRH
                     ATLDAIREILVRQGFIEVNTPKMISTATEGGAALFPIFYYDREAFLAQSPQLYKEQLT
                     MAFENVFEIGPIFRAEPSRTNRHLSEATSIDVEKAFVDYTDMMALLERIILHIFASIK
                     EKKKNDLQCLDLQLPSFEMPFPKLSYSAIIDQLQSIGERIRWGDDLSPQMMKNLSDER
                     LNGFYFITDWPTSIKPFYVKPKYIERQEISESFDLMYGSLELSSGSTRINRKDELLQR
                     MKMQGLNTQAFDYHLRLFDYGVPPHAGFGVGLERLLMAITKIENIRDLTLYPRDIDRL
                     VP"
     gene            1382..1654
                     /gene="gatC"
                     /locus_tag="VHF44_02530"
     CDS             1382..1654
                     /gene="gatC"
                     /locus_tag="VHF44_02530"
                     /inference="COORDINATES: protein motif:HMM:TIGR00135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEX2124459.1"
                     /translation="MVSKEEIRHLGQLSKLELTDQELRKYESQIEEIIRYLDVLDRLS
                     LDEIEPVQSTIKVSELRKDNVETFQGDALKDVKYRKDAFIKGPRIS"
     gene            1655..3106
                     /gene="gatA"
                     /locus_tag="VHF44_02535"
     CDS             1655..3106
                     /gene="gatA"
                     /locus_tag="VHF44_02535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0030956 - glutamyl-tRNA(Gln)
                     amidotransferase complex [Evidence IEA];
                     GO_function: GO:0050567 - glutaminyl-tRNA synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_process: GO:0006424 - glutamyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEX2124460.1"
                     /translation="MTNLCHLNSEQITSGIKNGDFSAEEYVSRILERIEEIDIKINAF
                     VTVDNEGALEKARQIDRKIRNGEQNIGSLAGVTVGIKDNICTSGLKTTCASKILEDYV
                     PPYDATTVRRLKESDAIIIGKLNLDEFAMGSTTEYSIKGPTHNPWNIDYVAGGSSGGS
                     AASVAASECAISLGSDTGGSIRCPASFCSVVGLKPTYGSVSRYGLVSYANSLEQIGPI
                     GKTVSDAVLVMNAIAGKDNRDHTTLERVPKYTLSPTKKNIRVGLVKELVEGAEPEISK
                     CIYSAMDLFSSLDFKCEETSMKSIEYSLSSYYTIATAEASSNLARYDNIRYGFDLSPD
                     GYEWNMYFSKVRSNFGQEVKRRIIIGSYVLSAGYYGKYYLKAQKVRSLLKQELKSLFE
                     KYDILISPTMPLLPFKFGEKIDDPLKMYLIDIDTVIANLSGIPAISVPAGFSNDLPIG
                     LQIMANELQEQTMLDAALYFESATNNIQRSLDL"
     gene            3048..4550
                     /gene="gatB"
                     /locus_tag="VHF44_02540"
     CDS             3048..4550
                     /gene="gatB"
                     /locus_tag="VHF44_02540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEX2124461.1"
                     /translation="MQHYILKVQLIIFKGVLTYKMALAVNIGLEIHCQLTALRSKLFC
                     SCHSDYRRKMPNNNVCPICSGLPGSLPLLNQRAVELAGMVSLALGCTVPDKIMFYRKN
                     YFYPDLPKNFQLSQYNFYGISSIGVDGKLEYTGSKKAVIRRVQLEEDPGRLVYETGTS
                     DTNFYTLIDYNRAGVALIEIVTEPDFTDPKDVRIFLNKISSIIEHLGVCDAKLEGSVR
                     CDANVSIEGKKKVEIKNVNSFKEVEKALTYEITRQKTMSIHDIEIKAETRHWDDLRKI
                     TKQARTKEEEQDYRYFPEADIPTIVLGNEFVSTIKSNMPELPEERKVRFVTDYKLSEH
                     VAQVLIDNKELSDLFEFSVRIYSSPKEIANWIVTDLMGFIDDSEQKGSIFSGLKIEAK
                     HIADLARLVDQNIINRSTAKTILRQVIKTGEMPSELAVNINASKIHDTGVIAEAVDSI
                     FVREKSAVIDAKTNPNAANFLLGKVMQLTKGKADPKIALNLITTKLSESN"
     gene            complement(4613..5851)
                     /locus_tag="VHF44_02545"
     CDS             complement(4613..5851)
                     /locus_tag="VHF44_02545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00300 family protein"
                     /protein_id="HEX2124462.1"
                     /translation="MIGKYEQEIEVKGHLIDSMILTKIFDKVMDLKGDFHVLEFSVGK
                     KKGDPSYARLLVRGTNQQHLDELLESVYREGAQPISVQQVMLEPAVKDMVMPDSFYST
                     TNNATQVFYNSSWIDVDNMMMDKCIVLDRQKMRAECKMIRDVKKGDSIVVGERGVRII
                     PQERPREGVDIFQFMSSSSSSERPTQQIARKVANDIYRIKESEGKIAVVAGPVVVHSG
                     ASEALAKLIRMGYIHGLLAGNALAVHDIENSLMGTSLGMQVNDGTLAVRGHRNHMRAI
                     NEVFKFGSLRTMVEKKVLEKGIMYECIVNDIPFVLAGSIRDDGPIPDVVTDVVEAQRK
                     YKQVLKDTKMVLMLSTMLHSIAVGNMLPATVKVVAVDISQPVVTKLLDRGTTQAIGIV
                     TDVGAFLPMVVQQLEQQTMT"
     gene            complement(6042..6365)
                     /locus_tag="VHF44_02550"
     CDS             complement(6042..6365)
                     /locus_tag="VHF44_02550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124463.1"
                     /translation="MQYFSALKIGEKRVKAAQELLTTYTGYAMPALALKDNKDNKWEP
                     VGEENLFAVIKETNGYMIAFCDKNGIAKSIAQWFTEEKKDEIIAKIKMEHDMKEYFGK
                     LSLPI"
BASE COUNT         2145 a         1144 c         1193 g         1994 t
ORIGIN      
        1 atacgattta ggtatttgaa attgagtaat ctagtacgtg aggaagaact ggggcagtgg
       61 agacggacac attattctgc tgaaatcaat tcttctcttg ataataaaga agtaataatt
      121 atgggctggg tctcaagtat ccgcgatcat ggcaatattt tgtttattat gataagagat
      181 agatatggag atgttcaagt tattgcaaag aaaagtgaat gtacagatga agtgttagaa
      241 cagatacgtc aaataaaaga acatacagca cttgcagtac gaggaacaat ccgatcccaa
      301 cgaaaagcac ctaacggtgc tgaagtaatt ccattagaat tgaagatatt ttctatatcc
      361 aaaaaagctg cgcctttcat ggttcaagac aaaacatcag taggtattga tacaaggtta
      421 gatttgaggg cactagacct ccgtagaaat attcttcaga gcatcttcca tatccgtcat
      481 gccactctgg atgcgatcag agagattctt gtaagacaag gatttattga ggtaaataca
      541 ccaaagatga tctctaccgc tacggaagga ggtgcagctc tgtttccaat attttactat
      601 gaccgagaag catttcttgc acaaagccct cagttatata aggaacaact gaccatggca
      661 tttgaaaatg tatttgaaat aggtccaatt ttcagagctg aaccatctcg tactaacaga
      721 catctttcag aagcgacatc tatagatgtt gaaaaagcat ttgtagatta cacagatatg
      781 atggcattgc ttgagagaat aattttgcat atattcgctt caattaaaga aaagaaaaaa
      841 aatgatctac aatgccttga tcttcaattg ccaagttttg aaatgccatt tccaaaactt
      901 tcttattcag ctataataga tcagctacag agtataggag aacggatcag gtggggagat
      961 gatctatctc ctcagatgat gaaaaactta tcagatgaga ggttgaatgg tttttacttt
     1021 atcactgatt ggcctacttc tataaagccc ttttatgtaa aaccaaaata tattgaacgt
     1081 caagagatct ccgaatcgtt tgatctaatg tatggatcat tagaattatc atctggtagt
     1141 actagaataa atagaaaaga tgaattatta cagagaatga aaatgcaggg attgaataca
     1201 caggcatttg attatcacct ccggctattt gattatggag ttccacctca tgcaggattt
     1261 ggcgtaggtt tagaacgtct acttatggct atcacaaaaa tagaaaatat acgcgatcta
     1321 actttatatc ctcgcgatat agacaggtta gtaccataag agaaaaatgg agcattttga
     1381 catggtatct aaggaagaaa tcagacatct tgggcagctt tcaaaattag aattaacaga
     1441 tcaggaactt cgaaaatatg aatcacagat cgaagaaata attaggtatt tagatgtatt
     1501 agacagacta tctttagatg aaatagaacc agttcaatca acaataaagg tttctgaact
     1561 gagaaaagat aatgtggaga cgttccaagg agatgcatta aaagatgtaa agtatagaaa
     1621 agatgccttt ataaaaggtc cgaggatatc ttgaatgaca aacctgtgtc atcttaactc
     1681 tgagcagatt acttcaggta ttaaaaatgg agatttttct gcagaagaat atgtttccag
     1741 gattcttgaa cgaatagaag aaatcgacat taaaattaat gcctttgtca ctgtagataa
     1801 cgaaggcgcg ctagaaaaag cacgacagat agatagaaaa attcgcaatg gagaacaaaa
     1861 tataggttca cttgcaggtg ttaccgtagg aataaaagac aatatatgca caagtggttt
     1921 gaaaacaaca tgtgcttcaa agatattaga agattatgtt cctccctatg atgctaccac
     1981 ggtcagaaga ttgaaagaaa gtgatgcaat cataattgga aaattaaacc ttgatgaatt
     2041 tgcaatgggt tctactacag aatatagcat aaaaggacca actcacaatc cgtggaatat
     2101 cgattatgtg gctggaggtt cttctggtgg gagtgctgca agcgttgcag catcagaatg
     2161 cgccatatca ttgggatcgg atactggcgg ttcgataaga tgtcctgcta gtttttgctc
     2221 cgtagtaggt ttaaaaccaa cctatggtag cgttagtagg tatgggcttg tctcttatgc
     2281 taatagttta gagcagattg gtcctatagg aaagacagtt tctgatgcgg tattggttat
     2341 gaatgcaatt gcaggtaagg ataatagaga tcatactacc ttagaacggg taccaaaata
     2401 tactctcagt cctacaaaaa aaaatattcg ggttgggtta gtgaaagaat tagttgaagg
     2461 tgctgaacca gaaatttcaa aatgcatcta ttctgctatg gatttattct ccagtttgga
     2521 ctttaaatgt gaagagactt ctatgaagtc tattgaatat tctctgtcat catattatac
     2581 aatagcgacg gctgaagcta gtagtaatct tgctagatat gataatattc gatatgggtt
     2641 cgatttaagt cctgacggat acgagtggaa tatgtatttt tcaaaagttc gaagcaactt
     2701 tggccaagaa gtaaaaaggc ggatcatcat tggatcgtat gttctttccg caggatatta
     2761 tggaaaatat tatctgaaag ctcaaaaggt tagatcgtta ttgaaacaag aattgaaatc
     2821 attgtttgaa aagtatgaca ttttgatatc acctactatg cctcttctgc cattcaaatt
     2881 tggtgaaaag atagatgatc cattaaagat gtatttgatt gacattgaca cagtaatcgc
     2941 taatcttagc ggaatacctg caatatccgt accagctgga tttagcaatg atcttccaat
     3001 aggcttgcaa ataatggcaa atgaattgca ggagcaaaca atgcttgatg cagcattata
     3061 ttttgaaagt gcaactaata atattcaaag gagtcttgac ctataaaatg gcattggcag
     3121 taaatatagg tctagaaatc cattgccaat taacagctct tcggagcaaa ttattttgtt
     3181 catgccattc tgattacagg agaaagatgc caaacaataa tgtatgtcca atttgctccg
     3241 gacttcctgg aagccttcca cttttaaatc aaagagctgt agaactcgca ggcatggttt
     3301 ctcttgctct aggttgtaca gttccagata agataatgtt ttatagaaaa aactatttct
     3361 atccagatct tccaaaaaac tttcagctga gccaatataa cttctatgga atcagtagta
     3421 taggcgtaga tgggaaacta gagtatactg gatcaaaaaa agctgttatt cgaagagttc
     3481 agcttgaaga agacccagga agattggttt atgaaactgg tactagcgat acaaatttct
     3541 acactcttat agattacaat agagcagggg tagctctaat tgaaattgtt acagaaccgg
     3601 actttactga tccaaaggat gtaaggatat ttttgaataa aattagttct atcatagagc
     3661 atttaggagt atgtgacgcg aaactcgaag gttcagttag atgcgacgct aatgtttcaa
     3721 tagaaggtaa gaaaaaagtt gaaattaaaa atgttaactc ctttaaagaa gtagagaaag
     3781 ctcttactta tgagattact agacagaaaa ctatgtccat acatgatata gagatcaaag
     3841 cagaaacacg acattgggat gatttaagaa aaataactaa acaggcaagg acaaaagagg
     3901 aagaacagga ttatcggtac tttcccgaag ctgatatacc tacaatcgtc ttggggaacg
     3961 aatttgtatc gacaatcaaa agtaatatgc cagaattacc cgaagagaga aaagttcgct
     4021 tcgttactga ttataaactt tcagagcatg tagcacaagt gctaattgat aacaaagagc
     4081 tttctgactt gtttgaattc tcagtaagga tttattcatc accaaaagag attgctaatt
     4141 ggattgttac tgatctaatg ggattcatag atgattcaga gcaaaaagga tctatttttt
     4201 ctggattgaa aattgaagca aaacatatcg cggatctggc tagactagta gatcaaaata
     4261 tcattaatag aagcaccgca aaaacgatcc ttagacaggt aataaagact ggcgaaatgc
     4321 catcagaact ggcggtgaac attaacgcgt caaagataca tgatactgga gttatcgctg
     4381 aagctgtaga ttcaatattt gtgcgtgaaa aatcagctgt tatagatgca aaaactaacc
     4441 caaatgccgc taatttcttg cttggtaagg ttatgcaatt aacaaaagga aaagcagatc
     4501 caaaaattgc acttaattta attaccacta aattaagtga atcaaactag ttcttcttct
     4561 tcttttcctc ttttcttcac ttttgtaatt aatgctgttg agcaatatgt tgtcatgtca
     4621 ttgtctgttg ttctaactgc tgcacaacca taggcaagaa agcaccaaca tctgtcacaa
     4681 ttcctatggc ctgagtagtc cctctatcta gaagttttgt cactaccggc tggcttatgt
     4741 caacggcaac aaccttaact gttgccggaa gcatgttacc tacagcaatt gaatgtaaca
     4801 tcgtcgatag cattaagacc attttagtgt cttttagtac ttgtttgtat tttcgttgcg
     4861 cttctacaac atcagtcaca acatcaggaa taggtccatc gtctctaatt gaccctgcta
     4921 atacaaatgg aatgtcattg acaatacatt catacattat acctttttct aagacttttt
     4981 tttcaaccat tgttcttaaa gatccaaatt taaagacttc attgatcgca cgcatgtggt
     5041 ttctatgtcc tcttactgca agagttccat cattgacttg cattcctaat gatgttccca
     5101 ttaaggaatt ctctatgtca tgaactgcaa gagcattgcc tgccagtaat ccatgtatat
     5161 aacccattct aattaattta gcaagagctt ctgaagcacc tgaatgaaca accacaggcc
     5221 cagcaaccac tgctattttt ccttctgact ctttaatcct atagatatca ttagcaacct
     5281 ttcgagcaat ttgctgtgta ggccgctcac tcgaactact actactcata aattgaaaaa
     5341 tatctacacc ttcccgcggc cgttcctgtg gaattattct tactcctctc tctccgacca
     5401 ctatgctgtc tccttttttc acatcacgaa tcattttaca ttctgctctc attttttgtc
     5461 tgtctaatac tatgcatttg tccatcatca tattatcgac atcgatccat gaactattgt
     5521 agaatacttg tgtcgcatta ttggtagtgc tgtaaaagct atccggcatc accatatctt
     5581 ttacagctgg ttcaagcatt acttgctgaa cagatatggg ttgtgctccc tctctataca
     5641 ctgattctaa taattcatct agatgttgct ggtttgtgcc tcgaactaaa aggcgagcat
     5701 agcttggatc tccctttttc tttcctacgc tgaattcaag aacatgaaaa tcacccttaa
     5761 gatccataac tttatcaaaa atttttgtca gtatcatcga atcgataaga tgtcccttta
     5821 cttcaatttc ttgttcatat tttccgatca agcgctaaaa caaatcaata tacaaacata
     5881 cagacattaa aattttaatc atattatcat aacaaacaac aacaacaact gtcctgttac
     5941 taaagatttt ctgttctcct ccatatgtat atataaaaac gccactttaa gcggttcata
     6001 ttaaaaaaat tgttgtcctg tcttttatag ctagatatac attatattgg aagcgacagt
     6061 ttaccaaaat attctttcat atcgtgttcc atctttattt ttgcaatgat ctcgtctttt
     6121 ttttcctctg taaaccattg ggcaatagat tttgctatac catttttgtc acaaaaagct
     6181 atcatatatc catttgtttc ttttattact gcaaagagat tttcttctcc aactggctcc
     6241 catttattgt ccttgttgtc ttttaaggca agagcaggca ttgcataacc agtatatgtt
     6301 gtcaaaagct cttgagctgc ttttacacgc ttctcaccta tctttaaagc tgaaaagtac
     6361 tgcattatat tagtattctt aaagggattt gctttaaagc gtttaggtcg accaaattat
     6421 aattctattt ctcatcattt ccttgccgtt taacagaatc aaaaaactga gcaagt
//
LOCUS       DATABJ010000161         2301 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_555587, whole genome shotgun sequence.
ACCESSION   DATABJ010000161 DATABJ010000000
VERSION     DATABJ010000161.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2301)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2301)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2301
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_555587"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..570
                     /locus_tag="VHF44_02555"
     CDS             <1..570
                     /locus_tag="VHF44_02555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SufD family Fe-S cluster assembly protein"
                     /protein_id="HEX2124464.1"
                     /translation="YAYENATVEWIDGNIGSRLTMKYPGVYMLGKNAHAEVVSIAFAG
                     ARQHQDAGAKAVHLAPNTTSRITSKSVSKDTGRTTYRGLLHVAKGATGVKSNVRCDAL
                     LLDENSRTDTYPYVEVNEDDATISHEASVGKIGEDQIFYLMSRGFSESDALSLIVGGF
                     MEPFTKELPMEYAVELNRLVKLEMEGSVG"
     gene            615..2039
                     /gene="sufD"
                     /locus_tag="VHF44_02560"
     CDS             615..2039
                     /gene="sufD"
                     /locus_tag="VHF44_02560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HEX2124465.1"
                     /translation="MVILSAINSQHINTITTENREPDWLIHMREKALSNYESLPLEVS
                     PLYSKYSDANRLKPEYIHLPDRTVKSEPYKDLVDRLDELEQGTGILQIGSSINRIFIP
                     DKIAKQGVIIADLKKAISQHEDLIKETLSANQLDYAEDKFLALEAAAFQSGIFIYIPK
                     NVIIEEPIRIVNSLADNGISSIARNIVVADISSKATVVQEIYAPPNAINNNNNIQQSY
                     FELVECHVHPNARLEMVTLQAMSADSINFSNRKAFIDRDAKMSWYLGMFGTQLSRYKI
                     DSVMKGPGSSGEDVEIIFGIGNQSFDVTSNLIHLGHNSRGRVLVKSVMKDTSKSLFKG
                     MIKIEKNAKAAESYLAGHAILLDKGAKSDAIPGLEIQTNEVKATHSASVAQLDESQLF
                     YLMCRGLSKDGAKREIVNGFLEPLSRKMGPTIRAWINYLIENKWSGKSLMLKTDEAME
                     QILEIEKSRYRETQDLFEKHYKYR"
     gene            2059..>2301
                     /locus_tag="VHF44_02565"
     CDS             2059..>2301
                     /locus_tag="VHF44_02565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEX2124466.1"
                     /translation="MSEWIKVGEVDSIKNGDLIDFDYKDKKILIARSGDKFFATDRIC
                     THAYADLSTGFMNVEEKTVTCPLHMSIFKLEDGVPQN"
BASE COUNT          824 a          375 c          471 g          631 t
ORIGIN      
        1 tatgcatatg agaacgccac agttgaatgg attgatggaa atataggtag cagactaacc
       61 atgaaatatc ctggtgtcta tatgttagga aagaatgctc atgctgaagt ggtatcaata
      121 gcttttgcag gcgcccgtca acatcaagat gcaggtgcaa aagcagtaca tctagcacca
      181 aacacaacct ccagaattac aagcaagtca gttagcaaag atactggtag gacaacatat
      241 aggggactat tgcacgttgc aaaaggtgct acaggtgtaa aatctaacgt cagatgcgat
      301 gcattgctgt tagacgaaaa ttcaagaact gatacatatc cctatgtaga agtaaatgaa
      361 gatgatgcaa caatatcaca tgaagcaagt gtaggaaaga ttggagaaga tcaaatcttt
      421 tatctaatga gtagaggatt ttcagagtct gatgcactat cactgatcgt tggtggcttc
      481 atggagccat ttacaaaaga attaccaatg gaatatgcgg tagaactgaa tagacttgta
      541 aagcttgaaa tggaaggctc agtaggttaa gagtatatac actctctttt ttattaaagg
      601 aatgatatag ctggttggtt attttatctg ctattaacag tcagcatatt aatacaataa
      661 caacagaaaa cagagagcca gactggctga tacacatgag agaaaaagca ttatccaatt
      721 atgaatcact gccgcttgaa gtttcacccc tttatagtaa atactctgat gccaaccgtt
      781 tgaagccaga atatatccat ctgccagaca gaactgtaaa gtcagagcca tacaaagatc
      841 ttgtagacag actcgatgaa ttagaacaag gtacaggtat attacaaatt ggctcttcaa
      901 taaatcgaat atttattcct gataaaattg caaaacaagg agttattatt gccgatttaa
      961 aaaaagcgat atcacaacac gaagatctta taaaggaaac gctatctgct aatcagttgg
     1021 attatgctga agacaaattc cttgcgttag aagctgcggc ttttcaatcg ggtattttca
     1081 tttatattcc aaaaaatgta attattgaag aaccaataag aattgtaaat tcactggcag
     1141 acaatgggat ctcttcaata gcacgtaata ttgttgtagc agatattagc tctaaagcta
     1201 cagtagttca agagatttat gcgccaccca atgcgataaa taataataat aatattcaac
     1261 aatcttattt tgagttagtt gaatgtcatg tacatcctaa tgctcgtctt gaaatggtaa
     1321 cattgcaagc gatgagtgca gatagcataa atttctcaaa taggaaggct ttcatcgata
     1381 gagatgctaa aatgtcctgg tatttaggaa tgtttggtac acagctatca agatataaaa
     1441 ttgacagcgt aatgaaaggt ccgggatcgt ctggagaaga cgtggaaatc atcttcggta
     1501 tcggaaatca atcattcgat gtcacatcta atttgattca cctaggtcat aactcaagag
     1561 gaagagtgct tgtcaagtct gttatgaaag atacttccaa atcgttgttt aaaggcatga
     1621 taaaaataga aaagaatgct aaagctgccg agtcttacct tgctggtcat gcaattctgc
     1681 tagacaaagg tgctaaatca gatgccatcc caggactcga aatccaaact aatgaggtaa
     1741 aagcaaccca ttctgcatca gtagcacagc tcgatgaatc ccagcttttt tatttaatgt
     1801 gtagaggatt aagtaaggat ggagcaaaaa gagaaattgt taacggtttt ttggagccat
     1861 tatcaagaaa aatgggacca actattagag catggatcaa ctatctaatt gaaaacaaat
     1921 ggtctggcaa atctcttatg ctcaagacag atgaggcaat ggaacagatc ttggaaatag
     1981 agaagtcgcg ctatagagaa actcaggacc ttttcgagaa acactacaaa tatagataaa
     2041 ggaacagaat atcaaagtat gtcagaatgg attaaagttg gcgaggtaga ttcaataaaa
     2101 aatggagatt taatagattt tgattataaa gataagaaga tacttatagc cagatcagga
     2161 gataaatttt ttgctacaga taggatatgc actcatgcat acgccgattt atctactgga
     2221 tttatgaacg tggaggaaaa gacggtcaca tgtcctttgc atatgtctat cttcaaatta
     2281 gaagatggtg ttccgcagaa t
//
LOCUS       DATABJ010000162         1762 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_345284, whole genome shotgun sequence.
ACCESSION   DATABJ010000162 DATABJ010000000
VERSION     DATABJ010000162.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1762)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1762)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1762
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_345284"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            150..1310
                     /locus_tag="VHF44_02570"
     CDS             150..1310
                     /locus_tag="VHF44_02570"
                     /inference="COORDINATES: protein motif:HMM:NF015882.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent malic enzyme"
                     /protein_id="HEX2124467.1"
                     /translation="MVRGKIEIQSRITLDNTDEEKSTLGLIYTPGVAYIATEISKNKE
                     LVYDYTSKWNNVAIICDGTRVLGLGNVGPESALPVMEGKSVLFKVLGGINAFPLCIST
                     RDKEEIISFVKAIQPVFGAVNIEDIESPKVLEIIERLRNEVSIPVFHDDQHGTAVITF
                     SALINALRLLDKKLMEIKIVISGAGSAGYGIYRILYEAGCRDIIVTDSKGAIYEGRSE
                     SLDNPYKKEIAKKTNSKKLRGTLTDVIREADVFIGVSGKADLLNDEMVKSMNSNAVVF
                     ALSNPDPEMLPPNALNAGAKIVATGRSDFPNQVNNALVFPSILRALLDLRVKTIQEDM
                     LVAVAKAIAALVTDAHLKEDYIIPKINDPRILPIVNQTMKEALQRQACVSRH"
BASE COUNT          623 a          267 c          338 g          534 t
ORIGIN      
        1 tgcttgagtg ttgatatact attatttgaa gactttaaaa taaaaagact agagaataat
       61 attcaatagg gtatttgcta gttttatata tatgaatttg acaagttact tgtttgactt
      121 taaaagagga tgcaattaat ctccatcgta tggtcagagg aaaaatagaa atacagagta
      181 gaattactct ggataatacc gatgaagaaa aaagtaccct tggtttaatt tacaccccag
      241 gagtggctta catagctaca gaaataagta aaaataaaga gcttgtttat gattatacct
      301 caaaatggaa caatgtggct attatatgcg atggaaccag agtacttggc ctgggtaacg
      361 ttggaccaga aagtgcatta ccagttatgg aaggaaaatc tgttttattc aaggtattag
      421 gcggcattaa cgcctttcct ctttgtatat caactagaga caaagaagaa ataatcagct
      481 ttgttaaagc tattcaacca gttttcggag ccgtaaatat agaagacatc gaatcgccaa
      541 aggtattgga gatcatagag cgacttagaa atgaagtttc aatacctgtt tttcacgatg
      601 atcaacacgg aacagcagta atcacttttt cagccttgat aaatgccttg agattattag
      661 acaaaaagtt aatggaaata aagatagtaa tttccggagc aggttcagct ggttatggga
      721 tatataggat tctatatgag gcaggctgca gagatataat tgtgacggat agcaaaggag
      781 ctatttacga gggaagaagt gaaagtttgg ataatccata taaaaaagaa attgcaaaaa
      841 aaactaattc caaaaaattg cgtgggacac ttactgatgt gattagagaa gctgacgtat
      901 ttataggcgt atctggaaag gcagatttat taaatgatga aatggtgaaa tcaatgaatt
      961 ctaatgctgt agtatttgca ttaagtaacc ccgatcccga aatgcttcca cctaatgcac
     1021 tgaacgccgg agcaaagatt gtcgctacag gcagatcaga ttttcctaat caggttaaca
     1081 atgctttagt attcccttct attcttagag ctttgttgga tctaagagtc aaaactatac
     1141 aggaagatat gctcgtagca gttgcaaaag caattgcagc actagtcaca gatgctcatc
     1201 taaaagaaga ttacataata cctaaaataa atgatccacg aatacttccc atagttaacc
     1261 aaacaatgaa agaagcactt caaaggcagg catgtgttag tcgacattaa cagctttgta
     1321 aatctttaat caaagaaaaa ttatgatatg acgataattt tgttacttct gtctatttca
     1381 atataaacta gaggtgtgtc atgttcaaac aaaaaagggt atagcattgg aaagaaattg
     1441 ttgatatgtg tatcaattaa atatgaaatt gatgttaaac tgagtgacca ttcactctca
     1501 ttatcctacc atagatagat cctgttataa tgtatctgcc atatttggag acttatcagt
     1561 tacttatagt tgattaaaga taattttatg tctttgtaat acacagaacc agcgtccgtg
     1621 cctctgtaaa tttgtgtata cagccttttg catatcttac tacattatac aatctgaaga
     1681 cattcttttc ttattgtgac aagtcagaag tatattgatt cgcaatgtac gttttgcact
     1741 gagtagataa aaagtggtca tc
//
LOCUS       DATABJ010000163         3906 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_556254, whole genome shotgun sequence.
ACCESSION   DATABJ010000163 DATABJ010000000
VERSION     DATABJ010000163.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3906)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3906)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3906
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_556254"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(30..374)
                     /locus_tag="VHF44_02575"
     CDS             complement(30..374)
                     /locus_tag="VHF44_02575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124468.1"
                     /translation="MNQSTIIIAVVLAAILATSIVAMALPLESAEAIGETIGGDAIGG
                     RGGDAESEGGDADIRQRGGDAETFLSLPSPSDSITSDATGGAGGDGEGGQGGDGNGGD
                     ATSTYNVNIDFS"
     gene            complement(697..3468)
                     /locus_tag="VHF44_02580"
     CDS             complement(697..3468)
                     /locus_tag="VHF44_02580"
                     /inference="COORDINATES: protein motif:HMM:NF021778.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEX2124469.1"
                     /translation="MYKYPSNTKFNFTVFHIAITFVIASIVYLTGSDNNASYAVDLLS
                     TNNTENKVFDIPSSSSSSSSSFSSELITTDHNISRHEIEMQVQILPDGQPAYKMLKHI
                     IKNSHSENDMTYRYSNQATIPGPTIIVTEDEEVDIKITDTNRSVIREHFIASIPGTFS
                     YDDKKLGEIGLFGAVIVNPKNSGIHGLINGSISNITLDQIDKDIVLYMVGSTFWGMEI
                     SKTGIQTPLWTNPTVAAEENQKVRFHVLGLSPIDNPEGHQHTFHLHAHRWVDPGTSHI
                     IDAKIINPRASHVFVVDAGDHVGPGDWQYHCHVFAHMEAGMMGTFRVSTTAANSSNTH
                     TTNSISGPSPYKNFATFEISDEPGKWFKNTKGDITHTGTESLAILNKSGTVHFMMSDT
                     NGEHTVTSMMFPENAKNMPFDQLTSFDGGGIVKLIDPGLYLFTCKIHHYMLAAVIVDD
                     PSTIGLDLGEEITLINDVTIPTSSDLATRLLRLFFISTAPNNWQNYLSLTPWHISYPN
                     VDVRISNGTILNLKEILEKKYGQNITLSPLQNPSTSGVGEVWIDTQFEKTASKTKPGT
                     ATAINTTTWQITKKVALPEINMNNPHNMWADKDQNLIYQTQWFDNKTTIFNRTSGQLI
                     KNIIVGDDPSHVMTRPNTDQLYVALNGEHGVLELSQRGESLERIIPMQLPGQNLSHPH
                     GHWLSHDGKFLITPNALSETSTIYNLEDNEIKGHVPIGHSPIATGMMPNSSKYYMTDF
                     HDSTINVIDTNNGTVIKRISLIKDYDPISGAISGPIGAFPIQTPVSPDGQYMVTANTL
                     SATITILDTESDEIVKMLPCDPGCHGVNFGAKAGGGYYAYVSSTFSNELIVVDGDPNN
                     DGDSSDAAIAGRVSLVSSNTQTDDKIVGLEGTGGQGVLAIPNVYNGWVQNVPSIWKDI
                     LTEEQQNPK"
     gene            complement(3493..>3906)
                     /locus_tag="VHF44_02585"
     CDS             complement(3493..>3906)
                     /locus_tag="VHF44_02585"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124470.1"
                     /translation="EIDLQDIKKDFILYVTDDAFWGMEIDNAKGKQQIPLWVNPTLVS
                     ANNDIVRLHLIALGSDFHDFRLDKYQWLKPGTNQIINKQTIGPLESHVFSISTNTNAT
                     YFDEIQLHLLSGMKGKFNVNTNGEGPSIPGISPLS"
BASE COUNT         1117 a          737 c          648 g         1404 t
ORIGIN      
        1 atagttcttc ccctctacct atgcttatat catgaaaaat cgatgttgac gttatatgtc
       61 gatgttgcgt cgccgccatt tccatcgccg ccttgtccgc cttctccatc gccgcctgct
      121 ccgcctgttg cgtcgctagt aattgaatct gatggtgatg gtaatgaaag aaatgtctct
      181 gcgtctccac ctctctgtct aatatctgca tctccacctt cactttctgc gtctccacct
      241 ctaccaccta ttgcatcccc acctatggtt tctccaatag cttctgcaga ctccaatggt
      301 aacgccattg cgactattga tgttgccaaa atagctgcca acacgacggc tattattatt
      361 gtactttgat tcattggaaa ctgatgttaa tttatactat atatacttta tataaaaaac
      421 atataatttg tttataaaat actttccctt tgaaaggaaa caatagttct actatttgtc
      481 gatggcaata ctgtttctgc taaaaggaac taacaaagat tttgtttgtc attctttaag
      541 tattcatatt atgaataata aagtaacagt tatacttaag actattagat taaattattc
      601 aattagagtc ttttagtgag tcctaaaggt tatcaaactt tagcgtgttc cagataagga
      661 tttgttagaa ggtgtcatct gacattacct agttagttat tttgggtttt gttgttcttc
      721 agtaaggata tccttccaaa tgctaggaac attctgaacc catccattat acacatttgg
      781 aatggcaagt acgccttgtc cgcctgttcc ttctagcccg actatcttat catctgtttg
      841 agtatttgaa gaaaccaatg atactctgcc ggcaattgct gcgtctgaag aatctccatc
      901 attgttggga tcgccatcta caacaatcaa ttcatttgaa aatgtgcttg aaacatatgc
      961 ataatatcct cccccagcct ttgctccaaa gtttacacca tgacatcccg gatcgcaagg
     1021 aagcattttt acaatttcgt cagattctgt atctaggata gtaattgttg cagataaggt
     1081 atttgcagtt accatatatt gtccgtctgg gcttacaggg gtttgtatag gaaatgcacc
     1141 tattggtccg ctaatcgctc cagaaatagg atcgtaatct tttataaggc taattctttt
     1201 gattacagtg ccattgttag tatctattac atttattgta ctgtcatgaa aatcagtcat
     1261 atagtattta cttgaatttg gcatcatacc agttgctata ggactatgcc ctattggtac
     1321 gtgtccttta atttcattat cttccaagtt gtaaatagtt gatgtctctg acaaagcatt
     1381 aggtgttatc aaaaatttac catcatgact taaccaatga ccgtgaggat gagataaatt
     1441 ttgtcctgga agttgcattg gaattattct ttccaaggat tctcctcttt gtgataattc
     1501 taaaactcca tgttcaccat ttaatgctac atatagttga tctgtgtttg gcctagtcat
     1561 tacatgtgat gggtcatcac ctacaataat attcttgata agttgtccag atgttctatt
     1621 aaatattgtt gtcttattgt caaaccattg agtttggtag attaaatttt gatctttgtc
     1681 agcccacata ttatggggat tattcatatt tatttctggt aatgccactt ttttggttat
     1741 ttgccatgtt gtagtattaa tagcagtcgc agtgccaggc ttggtcttgc ttgcagtctt
     1801 ttcaaattga gtatctatcc aaacctctcc cactccagac gtgcttggat tttgcaatgg
     1861 agataatgtt atattttgtc catatttttt ttctaaaatc tctttaagat ttagtatagt
     1921 accattagat attctaacgt ctacattcgg gtatgaaata tgccatggag ttagagacaa
     1981 ataattttgc caattatttg gagccgttga tataaaaaat agcctcaata atcttgttgc
     2041 caagtcactg cttgttggta ttgtaacatc atttatcaat gtgatttctt caccaagatc
     2101 caagccaatg gtagaaggat catcaactat aactgctgct aacatatagt gatgaatttt
     2161 acaagtgaaa aggtacaaac caggatctat taatttaact atgccaccac catcaaagga
     2221 tgttaattga tcaaaaggca tattttttgc attctcagga aacatcatgc ttgttactgt
     2281 atgctctcca tttgtatctg acatcataaa atgtactgtt cctgatttgt taagtattgc
     2341 aagtgattct gttccggtat gcgtaatatc gcctttggta ttcttaaacc actttccggg
     2401 ctcatcgcta atttcaaatg ttgcaaaatt tttgtatggt gatggtccag atatgctatt
     2461 ggtagtgtga gtattgcttg aatttgcagc agtagtagat actctgaagg tacccatcat
     2521 tcctgcttcc atatgtgcaa atacatgaca gtgatattgc cagtctcctg gacctacatg
     2581 atcgccagca tcgactacaa atacatggct tgccctagga tttattatct tggcatcgat
     2641 gatatgacta gtaccaggat ctacccatct atgtgcatga aggtggaatg tatgttgatg
     2701 tccttcagga ttatctatag ggctcaaacc taaaacatgg aaacgtactt tctgattttc
     2761 ttctgcagct actgtgggat tagtccataa tggtgtttgt ataccagttt tactaatctc
     2821 cataccccag aatgtagaac ctaccatata cagtactatg tctttatcaa tctgatctaa
     2881 agtaatatta ctaatgctac catttatcaa accatgtatt ccgctatttt ttggattcac
     2941 aattactgcg ccaaataaac ctatttctcc taatttttta tcatcatatg aaaaagttcc
     3001 aggtatagat gcaataaaat gttccctaat aacagatcga tttgtatctg taattttgat
     3061 atccacctct tcatcttctg taactataat tgtaggacca ggtattgttg cttgattact
     3121 atatctataa gtcatatcat tttctgaatg gctatttttt ataatatgtt taagcatttt
     3181 atatgcaggt tggccgtcag gtaagatttg cacttgcatt tctatttcat gtcttgatat
     3241 attatgatct gttgtaatta attctgaaga aaatgatgac gatgacgatg acgatgatga
     3301 cggtatatca aagactttat tctccgtgtt attcgttgat aataaatcta cagcatatga
     3361 tgcattatta tctgaaccag ttaaatatac aatagatgca atcacaaagg ttatggctat
     3421 atgaaatact gtgaaattaa atttggtatt actaggatat ttatacatat tacttatctt
     3481 cccctcctca ccttacgata atggcgatat tccgggtata cttggcccct caccattagt
     3541 attcacatta aattttcctt tcattcctga gagcaaatgt aattgtattt catcaaagta
     3601 agtggcattt gtatttgtac taatagaaaa gacatgactt tccagaggac ctatcgtctg
     3661 tttgttaata atttgattag tccctggctt taaccattga tatttatcta atctaaaatc
     3721 atgaaaatct gaaccaagag caataagatg gagtctaaca atatcattat ttgctgaaac
     3781 tagagttgga ttaacccata atgggatctg ctgtttacct tttgcgttat ctatttccat
     3841 tccccaaaaa gcgtcgtcag ttacatataa aataaaatct ttctttatat cttgcaaatc
     3901 tatctc
//
LOCUS       DATABJ010000164         2298 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_348288, whole genome shotgun sequence.
ACCESSION   DATABJ010000164 DATABJ010000000
VERSION     DATABJ010000164.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2298
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_348288"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..337)
                     /locus_tag="VHF44_02590"
     CDS             complement(<1..337)
                     /locus_tag="VHF44_02590"
                     /inference="COORDINATES: protein motif:HMM:NF019429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfuA-like protein"
                     /protein_id="HEX2124471.1"
                     /translation="MNKPIIFLGPSLSHDKARKIFEADFRGPAKKGDLLRLSSIIDDT
                     TIVGLVDALFLQDYPPSPIEVYQLMLNKNIILLGAASLGALRAVELEKFGMIGIGKIF
                     ELYKKGKLTA"
     gene            complement(330..1655)
                     /locus_tag="VHF44_02595"
     CDS             complement(330..1655)
                     /locus_tag="VHF44_02595"
                     /inference="COORDINATES: protein motif:HMM:TIGR00702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YcaO-like family protein"
                     /protein_id="HEX2124472.1"
                     /translation="MSIEQLHLQSRQKWTVNGTSRIMPAQETLERVTSVSQKIGVTRL
                     ADITNMDILGIPNYSAVLPGTEDYIWVYSGKGPTKVHAKTSALMECIERYSSLPSGGP
                     KNFISGSYDQLSKSFHVLHPDEIVEPVRFQYKSDMLMDFLPGFDLFTNKQIMVPASLA
                     LFRYSPVPPFLNPFAFHHTNGLASGNVMEEAICHALCEVIERDAMSIAELRASAIPFH
                     FLRHMINVLKSNGYKINSNFVEKYVDDPSVFPDVNISQIEFQPVQVLVRKFAEANIPL
                     IIKDITSDIGIPTFNASSIEWITHDYGYLAEGHGTHPDKRIALLRAITEVSQTRAANI
                     QGARDDLRKIKYRENNTDDKRAWQFMQSSRTINFSDVTSYFNYDILDDIKLILEHLKQ
                     AGLSRAIIVNLTNDVIKIPVVRAIVPGLETFKITKSVMGWRARRYFKNE"
     gene            1739..1915
                     /locus_tag="VHF44_02600"
     CDS             1739..1915
                     /locus_tag="VHF44_02600"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124473.1"
                     /translation="MDTRQKDAEVISEILLKAASEPEFRNILVKDPTKVLEQYNISPQ
                     AKLIIKKSITDLTQ"
BASE COUNT          709 a          421 c          404 g          764 t
ORIGIN      
        1 cagcagttaa tttgcctttc ttgtaaagtt caaaaatttt tccaattcca atcattccga
       61 atttctcaag ctctactgca cgcaatgcgc caaggctcgc tgcaccaagt agaattatat
      121 ttttatttaa cataagttga tagacttcta ttggtgaagg aggataatct tggagaaata
      181 atgcgtctac tagaccgact atcgttgtat catctataat gcttgagagt ctcaacagat
      241 cacctttttt tgcgggacct ctaaaatctg cttcaaaaat ttttcttgct ttgtcgtggc
      301 ttagactggg acctagaaat attattggtt tattcatttt taaagtacct tcttgctcgc
      361 caacccatga cagactttgt aattttaaaa gtctcaagac caggcacgat ggcccgcaca
      421 acaggtattt tgatgacgtc attggttaaa ttcactatta ttgccctgct taatccagct
      481 tgctttagat gttctaaaat tagttttata tcatcgagaa tatcatagtt aaaatatgaa
      541 gtaacatcag aaaaatttat tgttctactc gattgcataa attgccatgc acgtttatca
      601 tctgtattgt tttctctgta tttgattttt cgtagatcat ctctagcgcc ttgaatgttg
      661 gctgctctag tttgtgatac ctctgttata gcgcgcaata gagcaatgcg tttatcagga
      721 tgagttccat ggccttcggc aagatatcca tagtcgtgag ttatccattc gatactgcta
      781 gcattaaatg ttggaattcc aatgtccgat gtaatatcct taataatcaa aggaatgttc
      841 gcttctgcaa attttctcac taaaacttga actggttgaa attcgatttg tgagatattt
      901 acatcaggaa atacactagg atcgtctaca tatttttcta caaaattaga atttatctta
      961 tatccatttg acttcaatac atttatcatg tgccgtaaaa aatgaaatgg tatagcactg
     1021 gcacgtaatt cagcaatact catcgcatcg cgctctatca cttcgcataa cgcatgacat
     1081 atcgcttctt ccattacgtt gccagatgca agcccatttg tatgatgaaa cgcaaatgga
     1141 ttaagaaaag gagggacagg tgaataacga aataaagcta gtgacgctgg aaccattatc
     1201 tgtttatttg taaatagatc aaaaccaggt aggaaatcca ttaacatatc gctcttatat
     1261 tgaaatctaa caggttctac tatttcatct ggatgaagaa catgaaatga ctttgacaat
     1321 tgatcatagc taccactgat aaaatttttt gggccaccac ttggaagtga ggaataccgc
     1381 tctatgcatt ccattaaagc acttgtctta gcatgaacct ttgtagggcc tttgccgcta
     1441 taaacccata tataatcttc tgtaccgggt agaactgcag aataatttgg aatgcctagt
     1501 atatccatat tggtgatatc agcaagccta gtgactccga ttttttgtga tacagaagtg
     1561 actctttcga gtgtttcttg agcaggcatt attctagatg taccattaac tgtccacttt
     1621 tgtctagact gaagatgtag ctgctctatg ctcataaatg agagcgataa attagttcat
     1681 atcaagttta cggattttac attaggatta tatagcagat tttgtaatcg atttattagt
     1741 ggatactcga cagaaggacg ctgaggtcat tagcgaaatt ctgctaaaag ccgctagtga
     1801 accagagttt aggaacatac ttgttaagga tcctacaaaa gtacttgagc agtataacat
     1861 ttcgccacaa gccaaattaa ttatcaaaaa gagcataact gatcttactc agtagtacaa
     1921 agcaactaat tgacgaatta tgattattat tacggcatcc tatcttcttt aacaatccat
     1981 aaattgtaac gagatgatag atagtgattt atatcaaata aaagaaatag ataagcaact
     2041 atagatataa aagaatatta cagaattata tgaacagaaa atcaggtatc gtagatgtca
     2101 acaattttaa ttggatgacg tattattgac ttggcaattt acctctcttc tagggctaag
     2161 aaagtcgagg tatatatgta tctctacaag tgtctataaa tgtgtattat atttcaggtt
     2221 tcgaacttct ctgttgcacc gctcttactt tctgcctcat cagcaagcct tctaatttct
     2281 tccggtgttg gctctgtt
//
LOCUS       DATABJ010000165         5162 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1414898, whole genome shotgun sequence.
ACCESSION   DATABJ010000165 DATABJ010000000
VERSION     DATABJ010000165.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5162)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5162)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5162
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1414898"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            142..345
                     /locus_tag="VHF44_02605"
     CDS             142..345
                     /locus_tag="VHF44_02605"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124474.1"
                     /translation="MITGIGAIVNNEIVLVLKDKSSHSVLLKDDNTALRLKSLIEEVS
                     KEKKSVIGSKFENYITEIIVSER"
     gene            complement(426..770)
                     /locus_tag="VHF44_02610"
     CDS             complement(426..770)
                     /locus_tag="VHF44_02610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124475.1"
                     /translation="MSTFNHDPFEFNLTKISTMIKNLKEGLDPENLAYWYKRIEDQAI
                     EIVPPHLKKKIHFQQDRVLWMKFKIDISKRAVPYVIQVIEEYIPIMPYSTGLYFQKVQ
                     HMLMDEMNKDLC"
     gene            complement(839..1315)
                     /locus_tag="VHF44_02615"
     CDS             complement(839..1315)
                     /locus_tag="VHF44_02615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantetheine adenylyltransferase"
                     /protein_id="HEX2124476.1"
                     /translation="MKYNVVATGGTFDEIHVGHLALLTKAFEIGKKVIIGVSSDAFAK
                     RTKGNNTLHHNYEERISNLKEKIEEKFGNVTYEITKLDDVYGPTVIYGDVEAIVSSSE
                     TAIKGDLINDIRSRNGLKPLNIIVVNMIRAEDGYPISSTRIRNGEIDSFGKLLKTN"
     gene            complement(1552..2580)
                     /locus_tag="VHF44_02620"
     CDS             complement(1552..2580)
                     /locus_tag="VHF44_02620"
                     /inference="COORDINATES: protein motif:HMM:NF024634.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4Fe-4S binding protein"
                     /protein_id="HEX2124477.1"
                     /translation="MSALLKNRVWAMISEVAKRGVYPLHGSRLGVFRIPVDITEHSDI
                     SNIMTDLKNSGFIVDAYADRIYATYKWNEKGIDPLNQEELSADLLITVEIVTGEVVDI
                     IYQIKPLEFFGDPYWVRNYRQKADQNAKMVIDTIIRNTKIGDKLIAHYQKAEKLSLEA
                     AMKKLEELTPLAKNPKLRATTTASSNMSASAAPKPPASISPPPAPVSPAAGGGAGGGS
                     ANTTISLTGNGTNYSKVDGPIDPGFKSKRQQAGTFQGIKVWGPLDAPGQLGIWGNEVC
                     VDFDICIADGACIEACPVNVYEWLDTPGHPASEKKPFMIREKDCIFCMACENVCPPQA
                     VKIFQKGQ"
     gene            complement(2621..2935)
                     /locus_tag="VHF44_02625"
     CDS             complement(2621..2935)
                     /locus_tag="VHF44_02625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124478.1"
                     /translation="MNQEQPLLKRGQFYFIYDDEDTNTIILEDKTKRGLDVREYNIDE
                     KYGVRAEQGMIYDMDGNGHRVAIRRYFPRANYQLEDVIKIAEEMDAKYKAIREITCPD
                     DE"
     gene            complement(2959..3810)
                     /locus_tag="VHF44_02630"
     CDS             complement(2959..3810)
                     /locus_tag="VHF44_02630"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEX2124479.1"
                     /translation="MSSFKYAHPEVLCETDWVAENLKNPDIRILEVDYDVENAYKQGH
                     LPGAYMVRWKKDINDPTRRDIINKQQFEKLMSGVGATPETDIILYGDFNNWFAAFALW
                     VFQYYGHRKTKIMNGGRRKWEIENREYTKEEPASKSSKYVAQPPDEGIRAYLPDVKRA
                     IERAETVLVDVRSPKEFSGEITAPPEYPMEHAQRGGHIPGAQNIPWGQTLREDGTFKS
                     LDELKALYEGRGITSDKHVICYCRIGERSSHSWFVLKYLLGYPSVRNYDGSWTEWGNM
                     IGNPIER"
     gene            complement(4079..4179)
                     /locus_tag="VHF44_02635"
     tRNA            complement(join(4079..4115,4143..4179))
                     /locus_tag="VHF44_02635"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4143..4145),aa:Ala,seq:tgc)
     gene            4404..4706
                     /locus_tag="VHF44_02640"
     CDS             4404..4706
                     /locus_tag="VHF44_02640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124480.1"
                     /translation="MSFFGGNPSNNVNKRKYERLTLSIKQTVLERAHHRCQKCSAKFR
                     SDIQPHFEHINGSLKDNRPVNLRALCQQCFKLVEEKENRKGMFGKMRNSLEAIFGK"
     gene            4966..5139
                     /locus_tag="VHF44_02645"
     CDS             4966..5139
                     /locus_tag="VHF44_02645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124481.1"
                     /translation="MIVLQLICDICKKVILEKEGESYLNQEKFPISNEEAMMLDKEHR
                     GHECHIEAIEKEA"
BASE COUNT         1601 a          953 c          858 g         1750 t
ORIGIN      
        1 gatataatca aggaatttat gtataatgga gaaacttaag gtgaaaatgc catagcactt
       61 tcagtaagat ttgaatgcga ggataagtat gaagcagaga aactagcagg tctgatagca
      121 gttcaaaaaa atggtactac catgattaca ggtattggtg ccattgtcaa taatgagata
      181 gttctagttc taaaagataa atcatcgcat agtgtcctac tgaaagacga taatactgca
      241 ctgagactaa aatctttgat agaagaagta tcaaaagaaa aaaaatcagt aataggaagt
      301 aaatttgaaa actatatcac tgaaattatt gtttcggaac gctaatacac attttgattg
      361 gagagaagca tgtatactta tgccttcaaa ttcaggtttt gaattctcat cattgcacct
      421 gatttttagc atagatcttt attcatttca tccatcagca tatgctgaac cttttgaaaa
      481 tacagacctg tagaataagg cattattgga atatattctt caattacttg tatcacatag
      541 ggtacagcgc gttttgatat atctatctta aatttcatcc aaagaactct gtcttgttgg
      601 aagtgaattt tcttttttaa gtgaggggga acaatttcga ttgcttgatc ttctattctt
      661 ttataccaat aagcaagatt ctcagggtct agtccctctt tgagattctt tatcatcgtg
      721 ctgattttag tgaggttgaa ttcgaatgga tcatggttaa aagtactcat atttatataa
      781 atatacaatg cgtcaatcta tgataaaacg tcattaatca aaaatgattg attcttcttt
      841 aatttgtctt taacaatttg ccaaaggaat caatttcacc atttcgtatt cttgtagaag
      901 aaataggata tccgtcttct gcacgtatca tattaacgac aataatgtta agaggtttta
      961 gaccatttct cgaacgtata tcatttataa ggtctccctt tattgctgtt tcactgctcg
     1021 atacaatagc ttctacatct ccataaatta ctgttggacc atacacatca tcgagcttag
     1081 taatttcata agtgacattg ccaaacttct cttcaatttt ttcttttaga ttacttattc
     1141 gttcctcata attatgatgt agagtgttat tgcctttagt tctttttgcg aaagcatcgc
     1201 tagaaactcc aataattact ttctttccta tttcaaaagc ttttgtaagc aaagccaaat
     1261 gaccaacatg tatctcatca aatgttccac cagttgctac cacattatat ttcatttcca
     1321 ttgctttgta ttctacgaaa atcgaagatt tatacaaata gagtaaatac atagaatatg
     1381 gttaagatgt tgtaaaagag attgataatc caaaagaatc aagctcaaat ttttgcatag
     1441 atattaatga ttttttcaat aataataaca ataattatat attcatatta tttgaatatt
     1501 cttagttcct aaagcaaaga acaaaaaatt acagaaacaa gtatattata attattgacc
     1561 tttttggaat attttgactg cttgaggagg gcacacattc tcgcatgcca tacaaaatat
     1621 gcaatccttt tctctaatca tgaaaggttt cttttccgat gctggatgtc ctggagtatc
     1681 tagccattca tatacattga ctggacaggc ctcaatacat gctccatctg ctatgcatat
     1741 atcaaagtca acgcatactt cattccccca tattccaagc tgtcctggtg catctaaagg
     1801 accccatacc ttaataccct gaaatgtacc tgcctgttgt ctctttgatt taaagccagg
     1861 atctataggt ccatctacct tagaatagtt ggttccattg cctgtaaggg agatagttgt
     1921 gttagcacta ccacctcctg ctcctcctcc tgctgcagga gatacaggcg caggaggagg
     1981 agagatcgaa gcaggaggtt ttggagctgc tgatgccgac atattagaac tggcagtcgt
     2041 agttgctctt aatttaggat tcttcgctaa gggagttagt tcttctaatt tcttcatagc
     2101 tgcttcaagt gaaagctttt cagccttttg ataatgagca attaatttat caccaatttt
     2161 ggtgttccta atgatagtat caattaccat ttttgcattt tgatccgcct tttgtctata
     2221 gtttctaacc caatatggat cgccaaaaaa ttcaagaggc tttatttggt agattatatc
     2281 cactacttcc cccgtgacta tttctactgt aataagcaag tctgcggaaa gttcttcctg
     2341 attaagcgga tcaataccct tctcattcca tttgtaagtt gcataaattc tgtctgcata
     2401 tgcgtctaca ataaaaccag aatttttcaa atcagtcatt atgtttgaaa tatcagaatg
     2461 ctcagtaata tcaacaggga tcctgaacac acccagtcta gatccgtgga gaggatagac
     2521 accccttttt gcaacttcag aaatcattgc ccagacccta ttctttagca gcgcagacat
     2581 cgtaagtatt taaataaatt aagggctaaa aggctttcgt ttattcatcg tctggacagg
     2641 taatctctct aatagcctta tactttgcat ccatttcttc cgcaatcttt attacatctt
     2701 ctaattgata atttgctcgc gggaagtacc gtctaatcgc gactctatgt ccattaccat
     2761 ccatatcata aatcataccc tgttctgctc tgacgccata tttttcatcg atattatatt
     2821 cgcgtacatc caaacccctt tttgttttat cttccaatat gatagtatta gtatcctcgt
     2881 cgtcataaat gaaataaaat tgccctcgtt ttaatagagg ttgttcctga ttcattaaaa
     2941 tacctcagaa attaccactt atctttctat cggattgccg atcatattac cccattcagt
     3001 ccaagaacca tcgtaattgc gtacagaagg atatcctaac agatatttca aaacgaacca
     3061 actgtgagaa gacctttctc ctattctgca gtaacaaatc acatgcttgt ctgaagttat
     3121 acctcttcct tcgtataatg ctttgagctc atctagactt ttgaaggttc cgtcttctct
     3181 cagcgtctgt ccccacggta tattttgagc tcctggaata tgtccacctc tttgtgcatg
     3241 ttccatcgga tattctggtg gtgctgtaat ttcgcctgaa aattcttttg gagatcttac
     3301 atcgacaagt actgtttcgg ctctctcaat tgcccttttt acatcaggca aataagcgcg
     3361 gataccttca tcaggcggct gtgcaacata ttttgaagat tttgaggcag gctcttcctt
     3421 tgtatactct ctattttcta tctcccattt tcttcttccg ccattcatga tcttggtttt
     3481 tctatgaccg taatattgaa acacccacaa ggcaaatgca gcgaaccaat tattaaaatc
     3541 cccatacagt atgatatcag tctctggtgt ggcacccact cctgacataa gtttctcgaa
     3601 ctgttgctta ttaattatgt cacgtctggt cggatcattg atatcctttt tccagcggac
     3661 catataggca cctggcaaat gaccctgttt atatgcattt tctacatcat aatcaacctc
     3721 tagaattctt atgtccgggt tctttaaatt ttctgctacc cagtcagtct cgcataaaac
     3781 ttctgggtgt gcgtatttaa aactagacat atgcgtacta actttatcta ctacttaaaa
     3841 tatttgttca agaaataaag cgcctttgca aaaagaaata gtagataatt tgtctgtata
     3901 attctgagtt taatttgtgt tatagtctgt atcctatatg tttaagaaga tgcatactaa
     3961 ttcaaaatag gatttgagaa acttaatttt tattatcctc ataagctctt cgagttatag
     4021 cttttacttt ttttagctat atgcgttaag tcgataaata aatgattaaa ggtaataatg
     4081 gaccgggtgg gatttgaacc cacgaccacc tacgtttcct ttgcctgacg tcgtcatagc
     4141 atgcaaggca ggtattctac cggactaaac taccggccct cagaatatgc ctaatcgttg
     4201 ataatttaag tgctttgcga tttcatatgg aggtatgaac atttagtgta attgaaaaag
     4261 aaggaaaaaa gttttgctaa tcttttggtt tataaaaaga tactagcata atttcagctg
     4321 aattatttgt tgcatagaaa ttctaatgct atattaaatt atgttccgca agaaataagt
     4381 ttgaggaaca taaatcaatc agtatgtcat tttttggagg aaatccaagt aataatgtca
     4441 ataaacgtaa atatgaacgt cttactctta gtataaagca gacggtttta gaaagggcac
     4501 atcatcgatg tcagaaatgt tcagcaaaat tcagaagtga tatacaacct cattttgagc
     4561 atattaatgg atcattaaaa gataaccgac ctgtgaattt acgcgccctt tgccaacaat
     4621 gtttcaaatt agtagaagaa aaagaaaatc gaaaaggcat gtttggaaaa atgcgtaact
     4681 cccttgaagc gatattcgga aagtaagaga atagatctag gttttcagtt tattatctta
     4741 ttctaaactt gtatgatgtg gttatcatgg atatggttct tggtttatac tcaatagatg
     4801 tagtatcttg taaattttgt tcaaggcctt taaaaggctc taagttgaaa tagcaaataa
     4861 cacatacgtc tattgaggat tagcctgttt atcatcttaa taatcttgat ccgtcttttg
     4921 aatcgaaatc ctatatatat tgttacatct actgttctta taaaaatgat agtattacag
     4981 ctaatctgtg atatttgtaa gaaagttatt ttagagaaag aaggagaatc atatcttaat
     5041 caagaaaaat ttcctatatc taatgaagaa gccatgatgc tagacaaaga gcatcgagga
     5101 catgaatgcc atatagaagc aatagaaaag gaagcttagg cggtaagggg actaaatgaa
     5161 tc
//
LOCUS       DATABJ010000166         3336 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1650079, whole genome shotgun sequence.
ACCESSION   DATABJ010000166 DATABJ010000000
VERSION     DATABJ010000166.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3336)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3336)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3336
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1650079"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            679..1803
                     /gene="phaC"
                     /locus_tag="VHF44_02650"
     CDS             679..1803
                     /gene="phaC"
                     /locus_tag="VHF44_02650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class III poly(R)-hydroxyalkanoic acid synthase
                     subunit PhaC"
                     /protein_id="HEX2124482.1"
                     /translation="MIKETLVREKTTNIPEKTIEDGKNVDIPAFIEEIKEIYRKSEKT
                     KAVLHLAGDIKVGNTPHEVVAETRMYKLLHYRPLFSRTAKTPLLIVYALMNKSYIFDL
                     QPDKSWIRNLLAQGFDVYLIDWKAPTNVDKFVSFDDYVNWYIDDCIEIVRRKNHVDKV
                     TLHGYCLGSTMSVMYTALHQEKIRNLVAIAPIIDAENDTTVLSNLARHFDANKTFESI
                     GNLPYEQLYAAFSILKPFKQGVNKYINLVENIDNENFVQNFLRIEKWIFDTPPIAGET
                     YRQWIEDIQQNNLLVKNEMKLGNEIIDLSNIRVPLLNIVAEEDHLVSPQCSLPLNDSV
                     SSIDKRLMRFHTGHVGLIASSYSQNNVLPKVGQWLKARSQ"
     gene            complement(1884..2192)
                     /locus_tag="VHF44_02655"
     CDS             complement(1884..2192)
                     /locus_tag="VHF44_02655"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124483.1"
                     /translation="MSDIFRADDTTDAFKKAVEKGTEVQRDFIRQYSATQQDIMQNFL
                     SMLQGLTYYYAMFKTTVQTGGRISIPEAERQALNIEEGDLVQVIVIPIERKRKSAQEE
                     "
     gene            complement(2245..3042)
                     /locus_tag="VHF44_02660"
     CDS             complement(2245..3042)
                     /locus_tag="VHF44_02660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2124484.1"
                     /translation="MKVSYVNGYGIRYFDYDKVINQSDDRKDLILLHGLGASAERWLR
                     VIPDLTKHFRVIVPDIIGFGYSDKPTVEYTMDFFMKFFKDFLETLNIDKLNIVGSSFG
                     GHLATEFAIRYDNRIEKLVLAAPAGMMRSSTHHLDQYIMAALYPTYENALRAFTQMAY
                     DPSIVTEDTIKDFVNRMRLPNSKYAFMSTLLGMRDSPRLPGRLSNILTPTLLVWGDND
                     NTIPLQYSRGYDEIPHSNLVVISNCGHTPYVEKPIEFNREILKFLKD"
BASE COUNT         1103 a          584 c          574 g         1075 t
ORIGIN      
        1 caaatttctt ctaaccatgc tagctgtata gctcataatc cacatagtgg aagagtgtct
       61 tcaagcgggc tcgtagctca gcatggatag agcgcctgcc ttcaaaaatc ctggagagag
      121 ccggaagtcg tgggcttcga tcccacgact tccggctctc cccaggaatt tagaaggcag
      181 gcgctctatc catgctgagc tacgagcccg cttcaagaga ctcttccact atgtggatta
      241 tgagctatac aactagcatg gttaggagaa atttgaatta tcctttataa aatgtttagt
      301 gttggaaaat aatttatgtg aagttaagct gaatgttttt aatatctata gtacatcata
      361 ctttgaatgg ctactagaac gtgtatttat ttggataata tgtatatgat atattctcaa
      421 atcgaaatct aataataatt caatgatagc acatgataag atgaaagcct atagaaacat
      481 catatatcaa taaaaagtta ttaatcttat tttatacatt attattattt ataataatgc
      541 gtagaattaa agacatttaa ggttagtatc tttctaataa agtataataa catggataaa
      601 tatacaagta ataacctact ctctaaagtc acggatagga tgaccgacat atgatgcagc
      661 aggaggttta aaaattaaat gataaaggaa acactagtgc gtgaaaaaac tacaaatatt
      721 ccagagaaga caattgaaga tggtaaaaac gtcgatatcc cggcgtttat tgaggaaatc
      781 aaagagattt atcgcaagtc agagaaaact aaagctgtac ttcatcttgc aggtgatatc
      841 aaagtcggta acaccccaca cgaagtagtg gcagaaacaa gaatgtacaa gcttttacat
      901 tatcgtccgc tattcagtag aacagcaaag acaccgctgc tgattgtata tgctttaatg
      961 aacaagtcat atatcttcga tttgcagcct gataagagct ggattcgcaa tttgttagcc
     1021 cagggctttg atgtctacct tatagattgg aaagcaccaa caaacgtaga caaattcgtt
     1081 tcatttgatg actacgtcaa ttggtacata gatgattgta tagagattgt cagaagaaag
     1141 aatcatgtcg acaaagtaac tctacatggt tattgcttgg gctcaacaat gtccgtgatg
     1201 tatactgctt tacatcaaga aaaaattaga aatctagttg ccattgcacc cataattgat
     1261 gctgaaaatg ataccaccgt ccttagcaat ttggccagac attttgatgc taataaaacg
     1321 tttgagtcta ttggtaattt accttatgag caattatatg cagccttttc catcctaaag
     1381 ccatttaaac aaggagtaaa taaatacatt aatcttgttg agaatataga taatgagaat
     1441 tttgttcaga atttccttag aatagagaag tggatttttg atacaccacc tattgcagga
     1501 gaaacataca gacaatggat agaagacata caacagaaca accttctcgt caagaacgag
     1561 atgaagttag gaaatgagat tattgatcta tcgaatatta gagttccact tttaaatata
     1621 gttgcagaag aagatcatct tgtatctcca caatgtagtc taccactaaa tgactctgta
     1681 tcgagtattg acaaacgatt aatgcgcttt catacaggtc atgttggact tatagctagt
     1741 agctattccc aaaacaatgt tcttccaaaa gttggccaat ggctcaaagc acggtcacaa
     1801 tagcctgtta aacttgtttg tgtgagaaac gtctaaccta gggctacgat aataactatt
     1861 ttttatacaa gtatttcagg agattattcc tcttgggcag actttcgttt tctttctatt
     1921 ggtattacta tcacttgaac caaatcgcct tcttcaatat tcaatgcttg tctctcagct
     1981 tctggaatag aaattctgcc tccagtttga acagttgtct tgaacattgc atagtaatac
     2041 gtcaagccct gaagcataga cagaaaattc tgcatgatgt cctgctgtgt agcagaatac
     2101 tgcctgataa agtctctctg aacttcagtt cccttttcca ctgctttttt aaatgcatca
     2161 gttgtatcat ccgctctaaa gatgtcactc atttgaatga atttatactg tcatttattt
     2221 aacgttagtg ttaaattaat gcttttaatc tttaagaaat tttaatattt ccctattgaa
     2281 ttcaataggt ttttcaacat aaggtgtatg accgcaattg cttattacta caagattact
     2341 atgtgggatt tcgtcatatc ctcttgaata ttgcaatggt atcgtattgt cattgtctcc
     2401 ccataccaac aatgttggtg taaggatatt tgataacctg ccaggaagtc ttggcgaatc
     2461 tcgcattccg agcaatgttg acataaatgc atacttagaa tttggaagtc tcattctgtt
     2521 cacaaaatcc ttgatagtat cttctgtaac aatactggga tcatacgcca tttgcgtaaa
     2581 tgctctaagt gcattttcat aagtaggata caatgctgcc ataatatatt gatcaagatg
     2641 atgagtagac gatctcatca ttcctgcagg cgcagctaaa actaattttt ctattctatt
     2701 atcatatctg attgcaaatt ctgttgctaa atgtcctcca aatgaggagc caactatatt
     2761 cagtttatca atatttagag tttctaaaaa atctttgaag aacttcataa aaaaatccat
     2821 agtgtattct actgtaggtt tgtcactata tccaaaaccg ataatatcag gaactattac
     2881 tctaaaatgc ttagttaaat ctgggataac acgtaaccat ctttcagcag aggctcctaa
     2941 tccatgtagg agaatgagat ctttacgatc atctgattga ttaattacct tgtcatagtc
     3001 aaaatacctt attccataac cattaacata agacactttc atgggaatat tttgatctga
     3061 caaatacgtt ctacaaatac actaattact gaacttgatt taatatgtta tcatttaggt
     3121 tatgcaagga agtaatagtt ataaagtata tacaaattaa tgtacgtctt attctgatga
     3181 gtctatttgt ctttcagcat tctatcgcgg aatttttaga tagatctata acttaacttt
     3241 tatggataga gagagagaaa tatcaagcaa agtatttgtc aagtcaatat tctgatctct
     3301 tatttgcata ttagcagttc aaaacacact ctgagt
//
LOCUS       DATABJ010000167         2655 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_559524, whole genome shotgun sequence.
ACCESSION   DATABJ010000167 DATABJ010000000
VERSION     DATABJ010000167.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2655)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2655)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2655
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_559524"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(333..1706)
                     /locus_tag="VHF44_02665"
     CDS             complement(333..1706)
                     /locus_tag="VHF44_02665"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEX2124485.1"
                     /translation="MMRKLQVSLASALSLNKDKLNFLSLLIGVLLIANGNTLSAFSTE
                     SMISNNESSLGSNLSYKQLYENSKIIAYSIIGIIAGSVIVIKARKAKTTKKPTVSGRK
                     TAPLIHENHDHIRPILSLSILIPAYNEEKFIGGTLESLRNQTVCPKNIIVIDDCSTDR
                     TTEIAKSFGATVTRTYANTGSKANALNYGMNIVDTKYIVTIDADMYLEPNALKEMFNL
                     MNSNEDISLVSSFILPKQIHNIWERSRFVEYMLTFSLLKKVQDLYNMIVISSGCFAIY
                     RTEDLKLAGGWSTRTKAEDMDLTWTFHEEGKKITLNQDALCYASEPGSFNLWKKQVTR
                     WNVGYFEVVSFHMAHLKKLPVLREFVFMAIADAIVGTAVFIGICVYVASSLNFTAFLY
                     YLLLDFILVILIPLYKSLRTNNLQKLLSCLPAYYLVHFIGIYFVLYGLTRVFVLRQTM
                     PQFEKGH"
     gene            complement(1706..2023)
                     /locus_tag="VHF44_02670"
     CDS             complement(1706..2023)
                     /locus_tag="VHF44_02670"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124486.1"
                     /translation="MTQTSSCQKYPKFSTLKTRIRMIIFCTLGEFKLKSRFPNFPLNR
                     GEDGSAERLRESHALRQGPAWIISHDKILVRSHTNTKPHAFMSIVLKNRRPDPIAKGT
                     AQN"
     gene            complement(2422..>2655)
                     /locus_tag="VHF44_02675"
     CDS             complement(2422..>2655)
                     /locus_tag="VHF44_02675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX2124487.1"
                     /translation="QIICEILQVTNGGVSRRIKIMYRANLSYAQLKGYIIFLTERDLL
                     RYDLNTNTFKTTEKGLNLLQAYNAINHTIQYTR"
BASE COUNT          796 a          501 c          489 g          869 t
ORIGIN      
        1 ctcaagtttc ctcttatcca tgaattaagc attcgtctag atatgacgga tgacaacaat
       61 acgttccgct agagatctaa ctcttcctat atattctatg gaatctgaat aaagggcata
      121 taattctgga ttcttgctgt cagcgctgca tgattgaata aacaagtaat gcgttagcaa
      181 aaaagatcaa aataatcaca catagtacca tcagctcatt ctttctaatt ggtagtttcc
      241 gactttttcc tatgaacttt attcctagca gaatgagata aaagacgatt cccaatcctg
      301 ctgagggggt gcctgccgcc atctatgtat cactaatgtc ctttttcaaa ttggggcatt
      361 gtctgcctga gaacgaacac cctcgttaga ccatagagca caaagtagat gcctataaaa
      421 tgtacaaggt aataagctgg aagacaactc agtaattttt gcagattatt agtacggagg
      481 ctcttatata agggaataag tatgacaaga ataaaatcca gtagcagata gtatagaaat
      541 gcagtaaaat tcaagctgga agctacatat acacatattc caatgaatac tgccgttccc
      601 actattgcgt cagcgattgc catgaaaacg aattctctca ataccggcaa cttctttaaa
      661 tgtgccatat gaaatgaaac aacctcaaaa taccctacat tccagcgtgt aacttgcttt
      721 ttccagagat taaagcttcc gggctcagaa gcataacata acgcatcttg atttaatgtt
      781 atttttttgc cctcttcatg gaaggtccat gtcaggtcca tatcctcagc ttttgttcgg
      841 gtcgaccaac cacctgctaa ttttagatct tctgttcggt atattgcaaa acagcctgaa
      901 gatattacaa tcatattgta gaggtcttga acctttttca aaagcgaaaa tgtcagcatg
      961 tattcaacaa atcggctacg ttcccaaata ttgtgaattt gttttggaag gataaaacta
     1021 ctgactaaag agatatcctc attagaattc atcaagttaa acatttcttt aagagcattg
     1081 ggttcgagat acatgtcagc atcaatggtc actatatact ttgtgtccac aatgttcatc
     1141 ccgtaattta gtgcattagc cttcgagcct gtgttagcat aagttcttgt tactgttgcc
     1201 ccaaacgact ttgcaatttc agttgtacga tcagttgagc aatcgtctat gacaataata
     1261 ttctttggac agactgtttg attcctcaga gattctagag ttcctccaat aaatttttct
     1321 tcattgtagg ccggaatcaa aatagacaat gaaaggatag gtcttatgtg atcatggttt
     1381 tcgtgaatca gaggagctgt ttttcttccg ctgaccgttg gtttctttgt agttttagct
     1441 tttcttgctt taataactat tacactgcct gcgatgattc ctataattga gtaagcaatt
     1501 attttcgaat tttcatacag ctgcttatat gatagattgc ttcctaaact ggattcatta
     1561 ttggatatca ttgattcggt agaaaatgca cttaatgtat tgccattagc aattagcagt
     1621 actcctataa gaagagaaag aaaatttagc ttatctttat ttagcgataa cgcgctggct
     1681 aacgaaacct gcagtttacg catcattaat tctgcgccgt accttttgca ataggatcag
     1741 gacgacgatt ctttagaaca atgctcataa atgcatgtgg tttggtattt gtatgcgatc
     1801 ggactaatat tttgtcatgg gagattatcc atgctggccc ctgacgtagc gcatgtgatt
     1861 ctctcaagcg ttctgcactt ccgtcctccc ccctattaag agggaagttg gggaatctgc
     1921 tcttcagttt aaactcccct agagtgcaaa aaataatcat tcggatacgt gtctttagcg
     1981 tcgaaaattt tggatacttt tgacaactac ttgtttgagt cattctagat ctcggagata
     2041 ataaatataa aaaactttgt aaaatagaaa aaatatgtgc gctggcttgg cagaagcatg
     2101 taaaatttac atattcgaga gtatgcgacc agcagttacc cataaaccat taacttggag
     2161 aaaaaactcc atagggtgac ataaagaaaa aagattacaa gttgtaggaa cgttgggaaa
     2221 cctgcctggg ctttaaggca gtaatttcat tcattattac cgatagtctt tgcttattcg
     2281 gcttgtactc tcgtgcacct ataaagcatt taatgtggta atttattgat aatctgtgca
     2341 ttgtaaattc acaccatttg gtagtcaagg ggagaaattg attattgtgg ggcacgttgc
     2401 agtagactca tgtttctttc ttcatcgggt atattggata gtatgattta tcgcattgta
     2461 tgcttgaaga agattaagac ctttttccgt agtcttaaat gtattagtat ttaaatcata
     2521 acgaagcaag tctctctcag ttaaaaatat tatatatcct ttcaattgtg cataacttag
     2581 gtttgctctg tacattattt taattctcct acttacgccc ccgtttgtaa cttgtaaaat
     2641 ctcgcagatt atctg
//
LOCUS       DATABJ010000168         3707 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1221924, whole genome shotgun sequence.
ACCESSION   DATABJ010000168 DATABJ010000000
VERSION     DATABJ010000168.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3707)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3707)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3707
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1221924"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(404..1177)
                     /locus_tag="VHF44_02680"
     CDS             complement(404..1177)
                     /locus_tag="VHF44_02680"
                     /inference="COORDINATES: protein motif:HMM:NF012573.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005509 - calcium ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-binding protein"
                     /protein_id="HEX2124488.1"
                     /translation="MENKKKIIISVLLVISLSLLSTTTIMYIQTASAIFHENLFGGSN
                     TKPGDVTEDKPANTTTTGSSAQTSTPKDDNIKGSAEEDVLVGLAGNDVIDGQRGNDNI
                     DGSEGDDYLISGQGADTLNGGVGNDVIEGNTGNDNIDGSEGDDYLIGGLGRNTLNGGV
                     GNDTLIGGPNSDTLTGREGQDIFVCNQGDDTVLDFNANEGDIRLNGCEDNDMTGKQTS
                     NGNVTGAANMTARSNNNTITINETAELGETGDILSDLLA"
     gene            1506..2981
                     /locus_tag="VHF44_02685"
     CDS             1506..2981
                     /locus_tag="VHF44_02685"
                     /EC_number="6.5.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008452 - RNA ligase activity [Evidence
                     IEA];
                     GO_process: GO:0006396 - RNA processing [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="RtcB family protein"
                     /protein_id="HEX2124489.1"
                     /translation="MSELVTKSGNHRVRKINDFEFMIEKDTSKGMNVPVTIYANDSLI
                     SKMVIDRTIDQAVNVSTLPGVRKHVVVLPDGHEGYGFPVGGVAATDLEHGIISPGGVG
                     YDINCGVRLIRTGLFERDLRPKLKDLVNGLFSSIPSGVGSEGSVKLTKSELDELLVEG
                     VHWAIDRGYGWKEDAEVCEESGKIIGADSAKISETARKRGTSQLGSLGSGNHFLEVQK
                     VDKIFDERAAESMGINKEGQLTVLIHCGSRGFGHQVCSDYLRVSEIAVRKYGMKLADR
                     ELACVPNSSSEGEDYRKAMFSALNFAWCNRQMITHWTRKLFEKVFNMTEEQLDMKLVY
                     DVSHNIAKLERHKVEGESMQDLVVHRKGATRAFPAGMDQIPNKYRNIGQPVIIPGSMG
                     TASWVLLGNRNSLDLSFGSTAHGAGRTMSRSAAKRSYTAEDVRSGLQSKGIYVKALTK
                     EGMVEETPDAYKDVDAVVEVSHSLGIATKVVRLIPIGVIKG"
     gene            2981..3400
                     /locus_tag="VHF44_02690"
     CDS             2981..3400
                     /locus_tag="VHF44_02690"
                     /inference="COORDINATES: protein motif:HMM:NF014086.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEX2124490.1"
                     /translation="MSQEDPDIAIIKARKMKELRDKAAAFEKAKKREQQPTPQKDNDR
                     EIISTYLYDRGEEVLKLAESQYPYQTKAILARIIELIKAGEISQRISGGELLALFRSI
                     GLKIRVNTSIKIEDHGKLVSLSDKLKQQNEDMTDDNS"
BASE COUNT         1257 a          592 c          712 g         1146 t
ORIGIN      
        1 ttgtcatttc tgcgaacaag agaaaattta gtattattaa cttgttaatt aaatgctaaa
       61 taaaaaacat aaataaatat tataaaatcc ttaggtagca cgacaaggat gtatttaaaa
      121 tatgtcattc tgaggttgaa cttcgaaaac caaaataaga actgaatact attttttatt
      181 ataatgttaa tagagttatg tcaattcgga attgatacta acaatatcaa aaattacata
      241 gacaaagata gagagaagaa tattctaatg atttagaaac tccttgttta gtattgacat
      301 tatttccatt ttctttaatt gtcttgtata tgtaccatag tttccgactt tactgaaata
      361 tacctatgat tcaataatcc atataccttc tttttctaag gtgtcaagct aagaggtctg
      421 acagtatatc cccggtttct ccaagctctg ctgtctcatt tatagtgatt gtgttgttgt
      481 tgctcctagc cgtcatattt gcggcacctg taacattacc attactggtt tgtttgcctg
      541 tcatatcatt atcttcacag ccgtttaatc taatatctcc ttcattggca ttaaaatcta
      601 agactgtatc atctccttga ttacagacaa agatatcttg gccttctcta ccagtaagag
      661 tgtcagagtt tgggccacca ataagagtat cgtttccaac tccaccatta agagtattgc
      721 ggcctagacc gccaattaga taatcatctc cttcagaacc atcaatattg tcatttcctg
      781 tattaccttc aattacatcg tttccaactc caccattaag agtatcggcg ccttggccac
      841 tgattagata atcatctcct tcagaaccat caatattgtc atttcctctt tgtccgtcaa
      901 ttacatcgtt tccggctaga cctactaaaa catcttcttc agctgaacct tttatattat
      961 catcctttgg agttgaagtc tgtgcggaac taccagtcgt cgttgtattt gcaggtttgt
     1021 cctcagttac atctcctggt ttagtgttgc ttcctccaaa tagattttcg tgaaaaatgg
     1081 ctgatgccgt ttgtatatac ataatagtag tagttgataa caatgaaagt gaaattacca
     1141 gtaatactga tataattatc ttcttcttat tctccattgc gatactttaa tcatgaaaag
     1201 atgaaggctt tttaaatctt cttgctttac atctattgca tatacaaaac taaaagaaaa
     1261 ataataaaca gagagaaagg ataacttatt tttctttcat atgctctaat aataagtatc
     1321 atgtcgaata ctatataatg caattcttaa tactcacttt cataatgtaa ttacacagat
     1381 ttagatgcga tattgaaatc aaaagatcta agaaaaaata attgattttt gtgattggtt
     1441 attttgacag cttgatatct cgaaggtaag cttataataa ctacggctca aatttaaatc
     1501 gtataatgag tgaattagta acaaaaagtg gtaaccatcg agttagaaaa ataaatgact
     1561 ttgaattcat gattgaaaaa gacacatcta aaggaatgaa tgttccggtt acgatttatg
     1621 ctaatgatag tcttatttcg aaaatggtta ttgatcgaac tattgatcag gcagtaaacg
     1681 tctctacatt gcctggcgtg agaaaacacg ttgtggttct tccagatgga catgaaggtt
     1741 atggattccc agtaggagga gtcgctgcaa ctgacctaga acacggcata ataagtccag
     1801 ggggggttgg atatgatatt aattgcggcg taagactgat tagaacgggc ttattcgaaa
     1861 gagatctaag accaaaatta aaagatcttg taaacggtct ctttagctcg atcccgtcag
     1921 gtgttggaag tgaaggatct gttaaattga caaaatctga actagatgaa ttgcttgtag
     1981 aaggtgtgca ttgggctatt gatcgtggat acggttggaa agaagatgca gaagtctgtg
     2041 aagaaagtgg gaaaataatt ggtgctgact ctgcaaagat ttcagagaca gcaagaaagc
     2101 gtggcacgtc tcaattaggt agcttaggtt caggcaatca ttttcttgaa gtacagaagg
     2161 tagacaaaat cttcgatgaa agagctgcag aaagtatggg tatcaataaa gaaggacagc
     2221 taactgttct aattcactgc ggatcgaggg gatttggaca tcaggtatgc agcgactatt
     2281 tacgtgtctc tgaaatcgct gtgcgaaagt atggaatgaa attagcggat agggaacttg
     2341 catgtgttcc gaatagttcg tcagaaggtg aagattatcg taaggcaatg ttttcggcat
     2401 taaattttgc atggtgtaac cggcagatga taacacactg gacaagaaaa ctttttgaaa
     2461 aagtatttaa tatgaccgag gaacagcttg acatgaaact agtttacgat gtatctcaca
     2521 atattgccaa gctggagcgc cataaggtgg aaggcgaatc tatgcaagat ttagttgttc
     2581 atagaaaagg agctacaaga gcatttcctg caggaatgga tcagattccc aataaatatc
     2641 gcaatattgg tcagccggta attataccgg gctctatggg aactgcaagc tgggttcttc
     2701 taggaaatag aaattctctt gatttaagtt ttggatcaac agcacatggt gctggtagga
     2761 caatgtcaag gtctgcggca aagagaagtt ataccgcaga agatgtaaga agtgggctgc
     2821 aatcaaaagg tatctatgta aaggcactta caaaggaagg aatggtggaa gagacacctg
     2881 atgcatataa ggatgtagat gcagttgtag aagtttcaca ttcgcttgga atagcgacta
     2941 aagtagtaag attaatccca attggagtga taaaaggata gtgtcacaag aagatccaga
     3001 tatagctatt atcaaggcca gaaagatgaa agaactacga gacaaggctg ctgcatttga
     3061 aaaggcaaaa aaaagggaac aacaaccaac acctcaaaaa gataatgata gagaaataat
     3121 atcgacctat ctatatgaca gaggagaaga ggtcttaaaa cttgcagaat cccaatatcc
     3181 ctatcagaca aaagcaatac ttgcaagaat tatagaattg attaaagcag gtgagataag
     3241 tcaaagaatc tcaggtggag aattacttgc tttattccga tctattggat tgaaaattag
     3301 agttaatact agtatcaaaa ttgaagatca tggaaagtta gtttcattat cagataaact
     3361 gaaacagcaa aatgaagata tgactgacga taatagctaa tatgtgcaaa gcatagataa
     3421 atctttcaga aataagaaaa aagaatgata ctactatgat tactgttccc tcttagagac
     3481 tcttcattat acaattgaat attgaatatt atatttctcc tattataaat agatgcgaaa
     3541 tatttctatg tattcttaaa attttcagtt tttgattact ctattcaaat agatacttat
     3601 caaagtattg ctgggaactt accgtttatt gtgattgaac ctttaagcgt tcatatgcta
     3661 tacaaacaat aagtttcttt taatgaaagt gtaacttttt tgtttat
//
LOCUS       DATABJ010000169         2524 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2068778, whole genome shotgun sequence.
ACCESSION   DATABJ010000169 DATABJ010000000
VERSION     DATABJ010000169.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2524)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2524)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2524
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2068778"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(164..1981)
                     /locus_tag="VHF44_02695"
     CDS             complement(164..1981)
                     /locus_tag="VHF44_02695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0030976 - thiamine pyrophosphate binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent enzyme"
                     /protein_id="HEX2124491.1"
                     /translation="MSEYENLRTADIVAEALIDWNVNVIFGLPGDGINGFIEALRRRQ
                     DKIKFILVRHEESAAFMACAYAKYTGKLGVCVATSGPGAIHLLNGLYDAKADNTPVIA
                     ITGSTYTDLMNSNYQQDVNLLQLFSDVAVYNTMINNPEQAEMAVDIACRSAMAQRGAS
                     HLTIPIDVQEMKLKGRYSRHKVGGHTSDVNVPLITSDTKLIEKAAKILNSGEKVVILV
                     GQGALGAGDEVISVAEKLGAPVVKALLGKAVIPDTHPVSIGGLGLLGTEPASDAMSEA
                     DTLLMVGTSFPYIDYLPKPGQAKGIQIDIKPDKIGLRYPVEVGLVGDSRLILTTLLPM
                     LHQKQNLDFLKSKQQAMKNWISLLNEQSTRTDKPIKPQVIAAAVSGELEDDAIISVDS
                     GTITSWAARYINIRKGMKFSLSGTLASMACGLPYAIAGQIAFPERQSVAFVGDGGFTM
                     LMGEFATAVQYNLPIKVIIIKNNTLGMIRWEQMAFLGNPEFGVEFTPIDFARFAEACG
                     GKGYSIKEPSEVNSVMHEAMAERKKPTIIEAYVDPFDPPMPPKVETEFVRKLAESFAK
                     GQPYATRIGLTLYRNQVHERLRGFHSHNQIDHHEHHQQE"
     gene            complement(2124..2402)
                     /locus_tag="VHF44_02700"
     CDS             complement(2124..2402)
                     /locus_tag="VHF44_02700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124492.1"
                     /translation="MSEYPYEDKIHSDDRVNYKAVYSSDGIKIGEVEAAFADSFIVKL
                     EKEKNMEIKYEIPRLEISSLIDDRITLKLKQREIDEKYQTSSIKKSLK"
BASE COUNT          727 a          517 c          379 g          901 t
ORIGIN      
        1 ctgaacataa caaatttgtt gtagtagtga tgcagcaata taataataat accatctaaa
       61 aggggcttta acttattcaa gagtcatatc agcatagcta ctactactac tactactact
      121 actactagtt actactatca cttcttctac ttctacatgt aaattactct tgctgatgat
      181 gttcatgatg atcgatttga ttatgactat ggaaacctct taatctctca tgaacctgat
      241 ttctatacaa agtcaaacca attcttgtag catatggttg tcccttcgca aaagattcag
      301 ctaattttct aacaaattct gtttctactt ttggtggcat tggtggatca aatggatcta
      361 cgtatgcttc aattattgtt ggtttttttc tctcagccat ggcttcatgc ataactgaat
      421 ttacctcact aggctccttt atagaataac ctttgccacc acaagcttca gcaaatcttg
      481 caaaatcaat tggtgtaaat tcaactccaa attcagggtt accaagaaat gccatttgtt
      541 cccatcgaat cattcctaat gtattatttt ttattatgat gaccttaatt ggcaaattat
      601 attgaactgc tgttgcaaat tcgcccataa gcatagtaaa tccaccatct ccaacaaaag
      661 ctactgattg tctttctgga aaagcaatct gtcctgctat tgcataaggt aaaccacatg
      721 ccatacttgc aagggtacca gatagtgaga atttcatacc cttcctaata ttgatataac
      781 gagctgccca gctagtaatt gttccgctgt ccacagatat tatggcatca tcttctagtt
      841 ctccagagac ggcagcagca ataacctgtg gcttaattgg tttgtcagtt ctggtacttt
      901 gctcgtttaa taggctaatc caatttttca ttgcttgctg ttttgatttt aaaaagtcaa
      961 ggttctgctt ctggtgtaac attggaagta gagtagttaa tataagccta gaatcaccta
     1021 ccagtccaac ttctacagga tatcgtaaac caatcttatc tggctttatg tctatctgaa
     1081 ttccttttgc ctgacctggt tttggcagat aatctatgta aggaaatgat gttccaacca
     1141 taagcaatgt atcagcttcg ctcatagcat cactagctgg ctcggttccc aaaagtccta
     1201 gtccaccaat actaaccgga tgagtatctg gaattaccgc tttacccaat aaagctttaa
     1261 ctacaggtgc tcctaacttc tctgcaacag atattacttc atctccagca ccaagtgctc
     1321 cctgtcctac taatattact actttttctc ctgagttcaa aatttttgca gctttctcta
     1381 tcaattttgt atctgacgta attaaaggaa cattaacatc agatgtatgc ccaccaactt
     1441 tgtgtctaga atatcgtcct ttcaatttca tttcttgaac atctattgga attgttaaat
     1501 ggcttgcacc tctctgtgcc attgcacttc tacatgcaat atctacagcc atctctgcct
     1561 gttcgggatt gtttatcata gtgttgtaaa ctgcaacatc tgaaaatagc tgtaataaat
     1621 ttacatcttg ctggtaattt gaattcatca aatctgtgta tgtacttcct gttattgcaa
     1681 taacaggagt attatctgct ttggcatcat ataatccatt taagagatgt attgcaccag
     1741 gacctgatgt cgcaacgcag acacccagtt ttcctgtata tttggcataa gcacaagcca
     1801 tgaatgctgc agactcttca tgtctaacaa gtatgaattt gattttgtct tgtcgcctcc
     1861 ttaatgcttc aataaaacca ttaataccat caccgggtaa tccaaaaata acgtttacat
     1921 tccaatcaat taatgcctca gccacaatat ctgcagtcct taaattttca tattcgctca
     1981 tataatgtaa catagattgt gtatgtgata taagtgcatt aaactgtgct agcctgtact
     2041 ttgcgatcta atgattgtat gaactatgtc atatacatat tttatttgca tctgctaaga
     2101 ggttacaata tctttgcatc cagttatttc aagcttttct tgattgatga tgtttgatat
     2161 ttttcatcta tctctctttg ttttaattta agagtaattc tgtcatctat aagacttgat
     2221 atttctagtc taggaatttc atattttatc tccatatttt tttctttttc taacttcaca
     2281 ataaaagagt ctgcgaatgc cgcttcaact tcacctattt ttattccgtc agatgaatat
     2341 acagccttat agtttaccct atcgtcgcta tgaattttat cctcataggg atattctgac
     2401 atattgaatt tacaatatag tttatctcaa acaagtatta aaaactagct atccaacatt
     2461 acagtttagt ctgtcgctgc tggtttataa atatagttta ctttagttga tgatcatatg
     2521 atga
//
LOCUS       DATABJ010000170         6056 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1005439, whole genome shotgun sequence.
ACCESSION   DATABJ010000170 DATABJ010000000
VERSION     DATABJ010000170.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6056)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6056)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6056
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1005439"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..863)
                     /locus_tag="VHF44_02705"
     CDS             complement(<1..863)
                     /locus_tag="VHF44_02705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEX2124493.1"
                     /translation="MNGNDVNATFKARAYKRTSDVIASLPTNIEEIYRKERLEGLQKI
                     PTIGKAIALKIEEYITTGTIKYYEELKATTPLNIDDFYDLEGIGPKTIKVLYDKLKIK
                     DLSGLEKAASEGRLRNIQGYSQNKEETILKKIQIFKKGRGRHLIGEVYPIVKQIETRL
                     SNVKGVKRAVAAGSFRRMKETVADIDYVVVSDSPQNVMDYFVEMPEVDEVFGKGPNKT
                     FVHLNNGMDADLFVVPEESFGSSLQYFTGSIEHGIAMRKIALAKGLHLNEWGIFDNDK
                     KRVAGFTEEEV"
     gene            1280..2533
                     /gene="ilvA"
                     /locus_tag="VHF44_02710"
     CDS             1280..2533
                     /gene="ilvA"
                     /locus_tag="VHF44_02710"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004794 - L-threonine ammonia-lyase
                     activity [Evidence IEA];
                     GO_process: GO:0006549 - isoleucine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEX2124494.1"
                     /translation="MNGQSIWDANKKQDFPTIEDIFRARELLNRTTVRKTPLQRSDTF
                     SKLTGTNIFLKLESLQRTGSFKVRGASVKISMLSKEQRRYGVIAASAGNHAQGVAYAA
                     SRNNISCTIIMPQNASPAKVAATKAYGATVVLRGLGYDECWIEAQEIAKKEGRTIIHA
                     FDDSHVISGQGTIGLELLEDLPELDQVYLPIGGGGLAAGIAIAIKSKKPSVKIIGVES
                     KAFPSMKESLSRGSLQNIKAGYTIADGISVKSPGKLTYEIASKYIDDVTLVDDSSILK
                     TMFLLMERSKMVIEPAGAASLAYLLSNGHPNKNKNVVSLLSGGNVDMYLLGQVVAKGL
                     MQMGRMLKIFIQLQDKPGALKTVVDGIAELNVNIVEVVHDRLSSNISAGTAGVYLSLE
                     MENEKHAERLIEFLKSKWLDFRIVS"
     gene            complement(2526..3923)
                     /locus_tag="VHF44_02715"
     CDS             complement(2526..3923)
                     /locus_tag="VHF44_02715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004421 - hydroxymethylglutaryl-CoA
                     synthase activity [Evidence IEA];
                     GO_process: GO:0006084 - acetyl-CoA metabolic process
                     [Evidence IEA];
                     GO_process: GO:0010142 - farnesyl diphosphate biosynthetic
                     process, mevalonate pathway [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HEX2124495.1"
                     /translation="MPVGIDDLAIYIPKLYVDYKDFAKARGIDPQKLEHGIGIKKMAL
                     VDTNQDPACMAANACLKLMQRNNLHPDDIGRMYIATESALDESKAMNSFVIGMLEQVY
                     GESSFEHAGGIECKFACVSGSYALYDNANWIRAEENNGKAAIVIVSDIAKYDIGSAGE
                     YTQGAGAVAMLVKDNPRLLAFDQKVASTIIKNEYDFYRPFGKETPLVNGNYSNLLYLI
                     QVKKAFDSYKEKAIRTGLIELADGESITDHIDFFSVHLPYRRMGEKALAYLLRHEWRH
                     LPRWNHVIKEVGMEEPNQPDSRGTIESILADKEFMKADEKFRRAFMQTSFYNEVFENK
                     MASSLEASAIIGNLYTASMYMGFRSLLEFEDKKGTDLESKRVGFGSYGSGSSAMVFSG
                     IIQPEYKEIVKRMNLEEETGPRTKLSMEEYKRLHGNERKFDDFLLNAHQEFVLTKIGG
                     STADKAGFREYSFVS"
     gene            complement(4110..5264)
                     /gene="mqnC"
                     /locus_tag="VHF44_02720"
     CDS             complement(4110..5264)
                     /gene="mqnC"
                     /locus_tag="VHF44_02720"
                     /EC_number="1.21.98.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009234 - menaquinone biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic dehypoxanthinyl futalosine synthase"
                     /protein_id="HEX2124496.1"
                     /translation="MVQKITVILQKTTFLVQDLISKSDIGDILNCELNDQRLGFKECL
                     RLIKSDDVYAIGLVGNILRQRLYGNTVTFVNNIILNYTNICVTYCKFCAFYRPPGHSE
                     SYTVPLEEIVRRVLVSREMFGITQVLIQGGHNPNLRVEYYEEAFKAIKTKSPAIGIHG
                     LSASEIDMIARVERSSTKEILARLKEAGLDSLPGAGAEILDDDVKAEISPLKLKSQEW
                     LQIMKEAHELGIKSSATMMYGTVETEEQRAQHIIKVAQLQEKTRGFMAFIPWSFEPNK
                     TQIQSEGQVKYPSGGLGLLKMIAISRIMYYGLIDHLQSSWLTNGIGMAQLALTYGADD
                     FGGTLIGEEVVSATGARSTELNAHKIIDAVKQIGFRIAERNNFYQIIKYY"
     gene            5349..>6056
                     /locus_tag="VHF44_02725"
     CDS             5349..>6056
                     /locus_tag="VHF44_02725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX2124497.1"
                     /translation="MLTHISGGTPALEKALAGEELLYEDGVQLMNDENLFLLGSVADR
                     IRKRLKGDTVSFVTSYYLNYTNICAASCPLCAFYRKGNEFDAYALTIEQILTRVSIAI
                     KQMGATEIHIVGGFHPKLGLDYYEDMIRTIKEEFPSVTIKALTPAEIFFISRLTRNSV
                     KEVLLRLKSAGLDALPGGGAEIFHPETRDVIVRGKCSGEEWLETAREAHNLGLRSNCT
                     MLFGHIEKPEHIVDHILK"
BASE COUNT         1857 a         1144 c         1033 g         2022 t
ORIGIN      
        1 taaacttctt cttcggtaaa acctgcaacc cttttcttat cattgtcaaa gattccccat
       61 tcatttaagt gaagaccttt tgcaagtgct atctttcgca ttgcaatacc atgttctatg
      121 ctcccggtaa agtattgcag agaggaacca aaactttctt caggaacaac aaacagatct
      181 gcatccattc cattattcag gtgtacaaat gttttgtttg gtcctttacc aaagacctca
      241 tcaacctcag gcatttcaac aaagtaatcc attacatttt gaggactatc agatactaca
      301 acgtaatcaa tatctgctac tgtttctttc attctccgaa aagaacctgc cgctacagct
      361 ctttttactc ctttaacgtt ggatagacga gtttctattt gttttacaat aggataaacc
      421 tctcctataa gatgtctacc cctacctttc ttgaatattt gaatcttttt tagaattgtt
      481 tcttctttgt tttgagaata accttggata tttcgaagcc ttccttctga tgcagctttt
      541 tcaagacctg ataaatcttt gatttttaat ttatcataaa gaactttaat tgtttttggg
      601 ccaatacctt ctagatcata aaagtcgtca atatttaatg gagttgttgc ctttagctct
      661 tcatagtact ttattgttcc tgtagttata tattcctcaa tttttagggc aattgctttt
      721 ccaattgttg gtatcttttg tagtccttct aatctttctt ttctgtatat ttcttcaatg
      781 tttgtaggca aacttgcgat gacgtcagat gttcgcttat atgctctggc tttaaaagtt
      841 gcattaacat catttccatt catttctatg ataaatccaa ttttacgaaa tatctttgct
      901 atggctgcat tcttcataat tattattata gtattataaa agagatagta atatgtctag
      961 atctaaacta tagacagtat ctacaaagga tctataatac ttcaaatact actactacca
     1021 ccgccaatag atcataaacc tatcatatat gacgggagtc atgaccatta agcgattaaa
     1081 atcataacta attagtatgc taagaatgaa ttctgtatgt tattatagtc acttgtagcc
     1141 atagtagcta tatcgtcaag acgatagcag agcttataca tttataatct atataataga
     1201 tatcatcata aaggtatttg agtaaactat ccacaaaatt ataattaagg cataaagttg
     1261 attgcattgt ccgatcttaa tgaatggcca aagtatatgg gatgcaaaca aaaaacaaga
     1321 ctttccaact atagaagata tatttagagc tagggaatta ctaaatagaa caactgttag
     1381 aaaaacgcca ttacaaagat ctgatacatt ttcaaaactt actggaacca atattttcct
     1441 caaactcgaa tctctgcaga gaacaggctc tttcaaagtt cggggggcat ctgttaaaat
     1501 tagtatgcta tccaaagaac agagaagata tggcgttatt gctgcatcag ctgggaatca
     1561 tgcgcaagga gttgcatatg ccgcatcaag aaataatatt tcatgtacaa ttattatgcc
     1621 acagaatgcg tcgccagcta aagtagcggc tacaaaagca tatggagcaa cagtagtttt
     1681 acgtggacta ggttatgatg aatgctggat tgaagctcaa gaaattgcta agaaagaagg
     1741 gcgcacaata attcacgctt ttgacgattc tcatgtaata tcaggccagg gaacaatagg
     1801 tctagaacta ttagaagact tgccagaact tgaccaagta tatttgccaa taggaggtgg
     1861 tggactagcg gcaggaattg ctattgccat aaagtccaaa aaacccagcg tgaaaattat
     1921 cggcgtagaa tctaaagcat ttccttcaat gaaagaatca ctttcaaggg gttctttgca
     1981 aaatataaaa gcaggatata ccattgctga tggtatatct gtaaagtctc ctggcaaatt
     2041 gacatatgaa atagccagta aatatataga tgatgtaaca ttagtagacg attcttcaat
     2101 attaaagact atgtttttac ttatggaaag atctaaaatg gttatagaac ctgctggggc
     2161 tgcaagccta gcatatttgc tttcaaatgg ccaccccaat aagaataaga atgtagtgtc
     2221 attactctcg ggtgggaatg ttgacatgta tttacttggt caggtggttg caaaaggtct
     2281 tatgcagatg ggcagaatgc tcaaaatttt tatacagtta caggacaagc caggagcact
     2341 gaagacagta gtggatggta tagccgaatt gaatgttaat attgttgaag ttgttcacga
     2401 tagattaagt tctaatattt cagctggaac tgcgggtgtt tatctcagcc ttgaaatgga
     2461 aaatgaaaaa catgcagaac gtttaatcga gtttctaaag agtaaatggt tagatttcag
     2521 aatagttagc tgacaaagct gtattctctg aatccagctt tgtcagcagt gctgccacca
     2581 atctttgtta agacgaattc ttgatgagca ttcaaaagaa aatcatcgaa tttcctttca
     2641 ttgccatgaa gtctcttata ttcttccatg gataactttg ttcgtggtcc agtttcttct
     2701 tcaagattca ttcgttttac aatctcttta tattctggct gtattatgcc actaaatacc
     2761 atagcactgc taccgcttcc ataagatcca aaacctactc tcttgctttc aagatctgtc
     2821 ccttttttgt cttcaaattc aagtaaactt ctaaatccca tgtacattga agcagtgtag
     2881 agattcccta taatagcaga tgcttcaagt gagcttgcca ttttgttttc aaaaacctca
     2941 ttataaaaag aagtttgcat aaatgcacgt ctgaattttt catcagcttt cataaattcc
     3001 ttgtcggcaa gaattgattc aatggtaccc cttgaatctg gttgatttgg ctcttccatt
     3061 cctacctctt ttataacatg attccaacgt ggaagatgtc gccattcatg ccttaataaa
     3121 taggctaacg ccttttcacc cattcttcta taaggaagat gtacactgaa aaagtcaatg
     3181 tgatctgtaa tagattcacc atccgcaagt tcaatcaatc ctgttctaat agccttttct
     3241 ttatagctat cgaatgcttt ctttacttga atcaaataca atagattaga atagtttccg
     3301 ttaacaaggg gagtctcttt tccaaaaggt ctgtaaaaat catattcatt cttgatgatt
     3361 gtagaggcaa ctttttgatc aaaagctagt aatctaggat tatccttaac cagcatggca
     3421 acagcaccgg ctccttgtgt atattcacca gctgaaccga tatcatattt ggcaatatcg
     3481 cttactataa caatagcagc tttgccatta ttctcctctg ctctgatcca atttgcatta
     3541 tcatatagtg cataagatcc actgacacat gcgaatttac attcaattcc acctgcgtgt
     3601 tcaaaggaac tttctccata aacctgttct aacattccta tgacaaaaga attcattgcc
     3661 ttggattcat caagagcaga ttctgttgct atatacattc tccctatatc atctggatgc
     3721 aaattgtttc tttgcattaa ttttaaacat gcattagcag ccatacaggc tggatcttga
     3781 ttagtatcaa ctaaagccat cttttttatt ccgataccat gctctaactt ttgggggtca
     3841 attccccttg ccttggcaaa atctttatag tcgacataaa gtttcgggat atagatagcc
     3901 aggtcatcaa ttccaactgg catacgacag aaactatata aatagacatt taaacgtatt
     3961 tctgatttga tttgacaaat gatagacaat ccattgacat agaaattctt ctgatctttg
     4021 tattgctcat actcaatcaa atattttgag cttatactac acattgcacc tcggaaggaa
     4081 gaaagatcct ttaagttatt tgaataattt taataatatt ttataatctg atagaagtta
     4141 tttctttctg caattctaaa accgatctgc ttgactgcat ctataatttt atgtgcatta
     4201 agttcggtcg atctggcacc tgttgcactc actacctctt cgccgataag agtgccacca
     4261 aaatcatctg cgccataagt taacgccaac tgagccatgc ctattccatt tgttagccat
     4321 gatgattgga gatgatctat taaaccgtaa tacattattc tagaaatagc aatcattttt
     4381 aatagtccta agcctcctga aggatatttt acctgtcctt ccgattgtat ctgtgttttg
     4441 tttggctcaa aactccaagg aataaatgcc ataaatcctc ttgttttttc ctgtaattgt
     4501 gcaactttta taatatgctg cgctctttgt tcctcagttt caactgtacc atacatcatt
     4561 gtagctgaag actttatacc aagttcgtga gcctctttca ttatctgaag ccattcttgg
     4621 ctctttaact tgagagggct gatctccgct tttacgtcat catcaagaat ctcagcgcct
     4681 gcaccaggaa gagaatcaag ccctgcttct tttaatctgg caagaatttc ctttgtactg
     4741 cttctctcaa ctcttgcaat catatcaatt tctgatgcag aaagtccatg gattcctata
     4801 gctggggatt ttgtctttat cgctttaaaa gcctcctcat aatactcaac cctcaagtta
     4861 ggattatgtc ctccctgaat cagtacttgg gtaataccga acatctctct cgaaaccaaa
     4921 acacgtcgaa caatttcttc tagtggaacg gtataagatt cactatgtcc aggaggacgg
     4981 tagaatgcgc agaatttgca ataagtaaca caaatatttg tataatttag tataatatta
     5041 tttacaaatg taacagtatt tccatacagt ctctgccgca atatatttcc aacaagtcct
     5101 attgcgtaga catcatcaga tttgattagt cttagacatt ctttgaaccc gaggcgttga
     5161 tcatttagtt cacaattcaa aatgtcccca atatcagatt tactaattag gtcttgcacc
     5221 aaaaaggtgg ttttttgcaa tattaccgta attttttgaa ccatcaatgc tatttattct
     5281 ttacaagcat ttccctcgca gttagtatca aatgttttat attaacttca aatgatagaa
     5341 catttaattt gttaacacat atttcaggag gaactcctgc tttagaaaaa gcacttgctg
     5401 gcgaagaatt attatatgaa gatggtgtcc agctgatgaa tgatgagaat ttatttttgc
     5461 taggatctgt agctgacagg attcgtaaac gccttaaagg tgatactgtt agctttgtca
     5521 cttcttatta tctaaattat actaatattt gtgccgcaag ttgtccattg tgtgcatttt
     5581 acaggaaggg caatgaattc gatgcttatg ccttaactat cgaacagatt ttaacaagag
     5641 ttagtattgc tataaaacaa atgggagcaa ctgaaattca tattgttggt ggttttcatc
     5701 caaagttagg tcttgattat tacgaggata tgataaggac aataaaggaa gagtttccta
     5761 gtgtgacaat taaagcattg actcctgctg aaatattttt tatatctaga cttactcgaa
     5821 attcggttaa agaagtcttg ttgagattga agtctgctgg gttagatgcg ctaccgggcg
     5881 gcggagctga gatttttcat cctgaaaccc gagacgtaat tgtcagagga aaatgttctg
     5941 gtgaagaatg gcttgaaact gctcgtgagg cacacaactt gggattaagg agcaattgca
     6001 cgatgctttt tggccatata gaaaaacctg aacatattgt agatcatatt ttgaag
//
LOCUS       DATABJ010000171         5382 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_560995, whole genome shotgun sequence.
ACCESSION   DATABJ010000171 DATABJ010000000
VERSION     DATABJ010000171.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5382)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5382)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5382
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_560995"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(169..978)
                     /gene="hisF"
                     /locus_tag="VHF44_02730"
     CDS             complement(169..978)
                     /gene="hisF"
                     /locus_tag="VHF44_02730"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEX2124498.1"
                     /translation="MALAKRIIPCLDVDNGRVVKGVHFAEVKDAGDPVEFAQKYIKQG
                     ADELVFLDITASQQGRETMRNVVRNVASVIDIPFTVGGGIKRLEDARDILLNGADKVS
                     INTAAVGNPELIYELMSIFGKQCVVVAIDAKRNYGKAGKNFFNDGVKNKKEFWFEVRI
                     YGGKEGTGIDAIEWAKKVEYLGAGEILLTSIDSDGTENGYDIMLTKAICQATRIPIIA
                     SGGCGSPKHMLEVFEKADVDAALAASIFHYEKSTIDKVKKYLKKNGIKIRL"
     gene            complement(980..1690)
                     /gene="hisA"
                     /locus_tag="VHF44_02735"
     CDS             complement(980..1690)
                     /gene="hisA"
                     /locus_tag="VHF44_02735"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003949 -
                     1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEX2124499.1"
                     /translation="MKVIPSIDLMNGNVVRLVRGDPANKVVYSDNPIETARKWEAAGA
                     DMLHVVDLNATLRTGINNNEIVFKIIDSVKIPVQVAGGIRSINAINEMLNKNAAKVVL
                     GTIAYKEPDSIRQIAKKKVEKLVISIDQNNGRVMIDGWREASSYGIVDAINLFMSMGI
                     RDFLLTSIDRDGTLNGPDVTTLSLASSFANSLIIASGGISSLEDIIRVRSAGCCSVIL
                     GKAVYEGKISIGRVKAIA"
     gene            complement(1687..2307)
                     /gene="hisH"
                     /locus_tag="VHF44_02740"
     CDS             complement(1687..2307)
                     /gene="hisH"
                     /locus_tag="VHF44_02740"
                     /EC_number="4.3.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000107 - imidazoleglycerol-phosphate
                     synthase activity [Evidence IEA];
                     GO_function: GO:0016884 - carbon-nitrogen ligase activity,
                     with glutamine as amido-N-donor [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEX2124500.1"
                     /translation="MVNVAIFDYGAGNLFSLKAALERNGAQNVIIIHDMKGLDKFDGL
                     VLPGVGNFDPAVKSIEPYKDIFIKSIEDFMPILGICLGMEMLFNHSEEGTRDGLKILD
                     GKVIILPKKKVKVPHMGWNNLEIIKKESKLLRGIKDGSWAYFVHSYLIAPENNSIVSA
                     TSQYGVNIPAIIEEGNLYGTQFHPEKSGKLGAIIMKNFVDVCSDPK"
     gene            complement(2307..2909)
                     /locus_tag="VHF44_02745"
     CDS             complement(2307..2909)
                     /locus_tag="VHF44_02745"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004424 - imidazoleglycerol-phosphate
                     dehydratase activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase"
                     /protein_id="HEX2124501.1"
                     /translation="MVSSATDERTAKMERITKETSVTVEVNIDGTGETTIKTGLPFYD
                     HLVTSIGKHANIDIILTAESKDRVIHHLVEDISIALSQTIDKALGNRSHIMRFGYAMV
                     PMDESLAYVTIDLVKRQFYVIQLKLYRDIVEGIPREDIEHFIRSLAQNLNACTHIIVE
                     YGENDHHKIESVIKAFAVALRMAASINQKSEGVPSTKGAM"
     gene            complement(2919..3914)
                     /locus_tag="VHF44_02750"
     CDS             complement(2919..3914)
                     /locus_tag="VHF44_02750"
                     /inference="COORDINATES: protein motif:HMM:NF012905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEX2124502.1"
                     /translation="MTIQRLHQYYIDKEFKTFNPQCILFDIDGVLVDVRKSYNIVIKK
                     TVDFILKYIIGDTVLKGIVNDDIILKFRQTGGFNNDTDTSYAIALAILVNPQKSIRST
                     REFLSFIAKNVDEGGIIAVEKFLSSYFHYAHIQRLKKILVYPAQLSNSMLATVFDEFF
                     YGPELFEKRHKIKPKYYFGKPLIENDKLLATRSTINDITKKFGSNVAIVSGRSKIAAE
                     YSLKPVFNVFNQRACIFLEDEEREYSKPNPYSIKKAMKIMNSKTAIYVGDSAEDLIMV
                     RRAEKETDIKIAFFGVYGCSTQPTLTARQFRKIGAEAIMENINILPNILNKVLIK"
     gene            complement(4522..>5382)
                     /locus_tag="VHF44_02755"
     CDS             complement(4522..>5382)
                     /locus_tag="VHF44_02755"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX2124503.1"
                     /translation="RLEGYIGISKKYLAIGIGSDQIIELILSIIGREKRATIFTPTFS
                     YFVNRCKLHDITVNRVPLNTTDNALRKEEFLNSGKQSDVVYICSPNNPTGNQFDKQLV
                     LEIIDMLEDKLIVVDEAYVEFADYSLTSDIAKYNNVVILRTLSKAFGLAGARIGYLIS
                     DEKFADVFRSIIQSPYPVNSLSLTIASIMFSNYSYIKATIELIKNERKRVFDCLSKLN
                     GIKVFNSNANFIFMETYDKYNAILKELEKGGIVVKKIGDIQGYRGCIRVTVGTKEMND
                     KFIKSIEKVV"
BASE COUNT         1641 a         1036 c          750 g         1955 t
ORIGIN      
        1 aagagttttg gcaatagaga caaacacgcc tcctagacca aggatcctgc ttaatttgtt
       61 gatgctaaag ataataactt gttcatgaaa tatatattcc caaattacct aatttagttc
      121 taaagataat aatttattag attgagtaat ttggcgataa tgcaattatt acaatctaat
      181 ctttatgcca tttttcttta ggtatttttt cactttatct atagtggatt tctcgtaatg
      241 aaaaatagat gcagctaatg ctgcatctac atctgccttt tcaaaaacct ctagcatatg
      301 ttttggactg ccgcaacccc cagaggcaat aataggtata cgcgttgctt gacaaattgc
      361 ttttgtcagc ataatatcat atccattctc tgttccatca gagtcaatac tagttagaag
      421 gatctcgcct gctccaagat attccacttt cttggcccat tctattgcat cgattcctgt
      481 tccttctttt ccaccataaa ttctaacttc aaaccagaat tcctttttat ttttaactcc
      541 atcgttaaaa aaattcttcc cagcttttcc atagtttctt ttagcatcta ttgcaactac
      601 cacacattgt ttaccaaaaa tggacattaa ttcgtaaatc aattctggat ttcctaccgc
      661 agcagtgtta atagatactt tgtctgcacc attcaataaa atatcacgtg catcttctaa
      721 cctcttgatc cctccaccca cagtaaaggg aatatcaata acactcgcta catttcgaac
      781 aacatttctc atagtttccc tgccttgttg cgatgcggta atatcaagga aaacaagttc
      841 gtcagctcct tgcttgatat atttttgtgc aaattctaca ggatcaccag catcttttac
      901 ttctgcaaaa tggactccct ttactacgcg accattatca acatccaaac aaggaataat
      961 tctctttgct aatgccattt tatgctatag cctttaccct ccctatactt attttacctt
     1021 cataaactgc cttacctagt atgacagagc aacatcctgc gctccgaact ctaataatgt
     1081 cctctagact cgaaattcct ccacttgcta ttattagtga attggcgaaa ctgcttgcaa
     1141 gagacaatgt cgtgacgtca ggtccattta atgttccatc tctgtctata cttgttagca
     1201 aaaaatctct gatacccatt gacataaaca gattaattgc atcaacgatt ccgtaactgg
     1261 aagcctctct ccagccatca atcatgactc tgccattatt ttgatctatt gaaattacta
     1321 atttttcaac ctttttcttg gctatctgtc gtatggaatc tggttctttg taagctatag
     1381 ttcctagaac tactttagct gcatttttgt taagcatctc atttatggcg ttaattgatc
     1441 taataccacc tgctacttga acaggaattt ttacagaatc aattatctta aaaacaattt
     1501 cattgttatt aatgccagtt cgtaatgttg catttaagtc tacaacatgt aacatatccg
     1561 caccagctgc ttcccatttc cttgcagttt ctataggatt atcgctatat accactttat
     1621 tagcaggatc tcccctaacc aatctaacaa catttccatt cataaggtct attgatggta
     1681 taactttcat tttggatcag aacacacatc aacaaagttt ttcattataa ttgcacctaa
     1741 tttgccagat ttttcaggat ggaattgggt accgtataga tttccttcct caattattgc
     1801 tggaatgtta actccgtatt gggaagttgc agaaactata ctattatttt ctggtgctat
     1861 caaatatgaa tggacaaaat atgcccatga cccatccttg atacctcgta ataacttact
     1921 ttctttttta attatctcaa gattgttcca acccatgtgt ggaaccttga cttttttctt
     1981 aggtaatatt attactttgc catctagaat tttaagacca tcacgtgtcc cttcttcgct
     2041 atgattgaat aacatctcca tgcctaaaca gatgccaagt attggcataa aatcctcaat
     2101 agattttatg aatatgtctt tataaggttc aattgatttt actgcgggat cgaaatttcc
     2161 tactcctggt agaactaaac catcaaattt atcaagaccc ttcatatcat gtataattat
     2221 gacattctgt gccccgtttc tttccaaagc agccttcaaa ctgaaaaggt tacctgcacc
     2281 gtaatcaaat attgctacat taaccattac attgcacctt ttgtactagg tactccttca
     2341 cttttctgat taatactagc agccattctg agtgctaccg caaatgcttt tatcactgat
     2401 tcaattttat ggtgatcgtt ctctccatat tcgacaatta tatgtgtaca tgcattcaag
     2461 ttctgtgcaa gcgatcttat gaagtgttct atgtcttctc ttgggatccc ttcgactata
     2521 tctctatata actttaattg tataacataa aattgacgtt tcacaagatc tatcgttaca
     2581 tatgccaaag attcatccat tggaaccatt gcgtatccga atcgcatgat atgtgatcta
     2641 ttaccaagtg ccttgtctat agtttgtgaa agtgcaattg aaatatcttc tactagatga
     2701 tgtatgactc tatcttttga ttcggctgtt agaataatat ctatgttggc atgtttacca
     2761 atggatgtaa caagatgatc gtaaaatgga agacctgttt ttatagtcgt ctctcctgta
     2821 ccgtcaatat tcacctctac tgtaacagag gtctctttag tgattctttc catctttgca
     2881 gttctttcgt cagtagcaga agaaaccaac gataaatact attttattaa tactttattt
     2941 aatatgttcg gtaatatatt gatattttcc attatcgcct ctgccccaat tttcctgaat
     3001 tgtcttgcag ttaatgtggg ctgtgtacta cacccgtaaa ctccaaaaaa agctattttg
     3061 atatccgttt ctttttctgc tctcctcacc attattaagt cttcagctga gtctccaaca
     3121 tatatcgcag tcttactatt cattattttc atggctttct ttattgagta aggattaggc
     3181 ttactgtatt cacgttcttc atcttcaaga aatatacaag ctctttgatt aaacacattg
     3241 aatactggtt tcagtgaata ttctgctgcg atcttacttc tacctgatac aatagcaaca
     3301 ttgctaccaa acttcttcgt aatatcatta atcgtactcc gggtagctaa aagcttatca
     3361 ttttcgatca aaggttttcc aaaataatat tttggtttaa tcttatggcg tttttcaaac
     3421 aattctggtc cataaaaaaa ttcatcaaaa actgtcgcaa gcatactgtt gctaagttgg
     3481 gcaggataaa ctaatatttt ttttaatctt tgaatatgtg cataatgaaa ataagaagat
     3541 agaaattttt cgacagcaat aataccgcct tcatccacat tcttagcgat aaaactaaga
     3601 aactctcttg ttgatctaat acttttttgt ggatttacta aaatcgcgag tgcgatagca
     3661 taactagtat cagtgtcatt gttaaagcca cctgtttgtc tgaactttag gattatatca
     3721 tcattgacta ttccttttag gaccgtatcg cctattatgt atttaagtat gaaatctaca
     3781 gtttttttaa ttacgatatt gtaagatttt cttacgtcta ctaatactcc gtcgatatca
     3841 aaaagaatac attgtggatt gaatgttttg aattctttat ctatataata ttggtgcaac
     3901 cgctgtattg tcatctgcca gttttattgt atttgaatct ataattgata aatttaagaa
     3961 ttgtacgaca tagacaatat atacttatat aaacatgaag cggcctggct gtgagaacat
     4021 taatcaatag atatgtttag cagaacagcg ttaagagtaa tatatattct atttgaatgg
     4081 tttatggcac atgtcataat cagtaacaga ataatccttg ttctaaagta tcagtataat
     4141 agagtagaat atataataaa gcctaaagta atcaatcaac ccagtgagca actatagcgg
     4201 atttgaataa gcgatattta tgttcctgga ttatcattat tcagcaatca tttttttcca
     4261 tgatatctga tcatattatc catataaaat ataattcata tactattttg ttattggacc
     4321 ttttttgttt agatatatgt agaaataaat ttatatcaag atactaaatc ataataatca
     4381 taaagagaaa acattctgcc aaatttaagt ttttttgata atgataaaca ttattatatc
     4441 attttttgag tatgtgatca ataaacatac aatacataat tgatatttga taaagataat
     4501 caaatcacta tggattgttc tttatactac cttttctatt gatttaataa atttatcatt
     4561 catctccttg gtacctacag taactctaat acagcctcta taaccctgaa tatcgcctat
     4621 ctttttaaca actattcctc ctttttctaa ctcttttaga attgcattat atttatcata
     4681 ggtttccatg aaaatgaaat ttgcattaga attaaaaacc ttaattccat tcaatttgga
     4741 gagacagtca aacactcttt ttctttcatt tttaatcaat tcaatagtag ctttgatata
     4801 actgtaatta gagaacatta tacttgctat tgttaatgat agactattga ctggataagg
     4861 agattggatt attgatctaa atacatctgc aaacttttca tcagatatca agtagcctat
     4921 tctcgcgcca gctaatccaa atgctttaga cagagtgcgc aatatgacaa cattattata
     4981 ttttgcaata tctgaagtta aagaataatc tgcaaattca acatatgcct catcgactac
     5041 aattaattta tcttcaagca tgtctataat ttccaacact aattgcttgt caaattgatt
     5101 gccagtggga ttattagggg aacaaatgta aaccacatca gattgtttgc cactatttag
     5161 aaattcttct ttccgtaggg cattatctgt tgtatttaat ggtactctat tgactgttat
     5221 atcatgtaat ttacatcggt ttacgaaata agaaaaagtt ggtgtgaaaa tagtagctcg
     5281 tttttccctt ccaataatcg aaagaattaa ttcaattatt tgatctgatc caatccctat
     5341 tgcgaggtac tttttactga tgcctatata tccttccagt cg
//
LOCUS       DATABJ010000172         3079 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1652600, whole genome shotgun sequence.
ACCESSION   DATABJ010000172 DATABJ010000000
VERSION     DATABJ010000172.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3079)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3079)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3079
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1652600"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..928)
                     /locus_tag="VHF44_02760"
     CDS             complement(<1..928)
                     /locus_tag="VHF44_02760"
                     /inference="COORDINATES: protein motif:HMM:NF015971.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124504.1"
                     /translation="MKDGILKRYNKNPVLIPNESNWWESKAVFNCATLYDGDKVHMLY
                     RAIGEYENYISRIGYAYSKDGFSFTRRNEIAISPIEEYEKYGIEDPRLVEIDNQAYIS
                     YVILSGYVRDRPLASTALATTTDYIDYTRLGIITSKESDNKDVVLFPEKINEKLSTGE
                     EKMTYFFLHRPSSWIGSAYGVDRPSIWLGEGNSLTSFEKHMLLLKPEEKWESLKVGAG
                     TPPIKTKHGWLVIYHGVSNDRVYSAGAAILDLKEPGKVLGRTKKPILEPEETYERHGD
                     VDNVVFPTGACVIDGKLFVYYGGADKVCCLATA"
     gene            complement(1870..2274)
                     /locus_tag="VHF44_02765"
     CDS             complement(1870..2274)
                     /locus_tag="VHF44_02765"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124505.1"
                     /translation="MEKTSINNQSESSTSTSKLKTAYNSFLQEGATLFPKVDQKLLLN
                     ILQFETTYQDWEGSVMLKIIYPATISDIDAKKDWIYRKYQKVSTIEENRTLRFKAIRM
                     YLEEIEKLLKEDPTIEYITGSATMTPSDAYAT"
     gene            complement(2315..2638)
                     /locus_tag="VHF44_02770"
     CDS             complement(2315..2638)
                     /locus_tag="VHF44_02770"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124506.1"
                     /translation="MTSNKKIIVLCFLFKSVKSNILPFEAMERENNEISDWQGLVNKP
                     VYSKNAQEVGIVTAIQPQHIVVSFGPITTDKYLIPKSSVKVVERGIIYLNENTKFVED
                     NYQFE"
     gene            complement(2852..>3079)
                     /locus_tag="VHF44_02775"
     CDS             complement(2852..>3079)
                     /locus_tag="VHF44_02775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124507.1"
                     /translation="VAAPFLSDMAGLSAGIGVALIALGTAYFVMAYGLWKGKGWAWTI
                     TLILSFIGIALGIASIAVVILERYFILSSTQ"
BASE COUNT          962 a          580 c          490 g         1047 t
ORIGIN      
        1 ctgctgttgc aagacagcat actttgtcag ctccgccata atatacaaat aacttcccat
       61 ctattacaca tgcaccagtt gggaaaacta cgttgtctac atcgccatgt ctttcatacg
      121 tctcttctgg ctctaaaatt ggcttttttg ttcttccaag aaccttacca ggttctttca
      181 aatctaaaat tgcggcaccg gcgctgtata ctctatcatt acttactcca tgatatataa
      241 ccagccatcc atgttttgtt ttgataggtg gagttccggc tccgaccttt aatgactccc
      301 atttttcctc tggtttgaga agcaacatgt gcttttcaaa acttgttaat gaattgcctt
      361 ccccaagcca gatactaggt ctatccactc cgtatgcgga gccgatccaa ctactgggtc
      421 tgtgtaggaa aaaataagtc atcttttctt ccccagtaga taatttttca tttatctttt
      481 ctggaaatag aacaacatcc ttattatccg actctttgct ggttatgata ccaagccttg
      541 tgtaatcgat gtaatctgtc gttgttgcca aggccgtcga tgctaggggt ctatctctta
      601 catatcctga aagtataaca tagctgatgt atgcctgatt atcgatttcc actagcctag
      661 gatcttctat tccatatttt tcatattctt ctataggaga aattgcaatt tcattcctcc
      721 tagtaaaaga aaatccatct ttgctatagg catatcctat tcttgaaata taattttcgt
      781 attctcctat tgctcggtac agcatgtgta ctttatctcc atcatacaaa gttgcacagt
      841 taaagacagc ttttgattcc caccaattag attcattggg gattaataca gggtttttat
      901 tgtatctttt gagaattcca tctttcatag ataatatacc cctaacgtat ggatgtttga
      961 agagttaata ttttatgttt taggttttaa gtagatatat ttctataaat tttttctaca
     1021 agatcaagag tgatatcata gtgatatccc attagtcatg tcaaatacat cattgaatat
     1081 taaaatccct tataaagata gactgtcata gtatgataat attgtattcc gacggacaac
     1141 aatccacgta ttgaatgtta atagcagaag aagacgagcc gaaaacaaca acaacaaaaa
     1201 ccaaataaac agataaagaa caggacaagt aagccttaga atactttaaa agcattagaa
     1261 ccgtttattg aaaaaagtta ggttgcaata tgctattaga tgatacaaga attcgatcca
     1321 aaacatgtat atccaaacaa aaggaagact agaatactct atttatcata gatgagactc
     1381 aaatacagat cgattctact gaagcctgat catgatgttg gctgtggaac aaattcatca
     1441 aatgatttta ggagtttatc tttcaagaca cagagaaata tgctggttga aaaagcactt
     1501 ctataaacta ttattcgtgt atgaataaaa aggattttta ctgtagtcta tcacatgttc
     1561 acaaatagat gatattattt attttcatat ataacacaat aacaaagtcc aatatcaatc
     1621 taataagatt aacaattggt taggaggcga ctagttagtt aagttagcag agccttcgag
     1681 acatcaaaaa agcatatatc tcaattaaat tctctgctgc gtatcgatta catcacatat
     1741 catcagcttg ctgagttcct tgccatctct gatactgtat ccttaacatt atagcctaaa
     1801 ctaatctctt ccagggtatt aatatagatc ctttaattga agtcttatcg tctttcatga
     1861 atcaatttct tatgttgcat acgcatctga aggagtcata gtcgcagaac ctgtgatgta
     1921 ttctatagtc gggtcttctt ttaacaactt ttctatttct tctagataca tgcgtattgc
     1981 tttgaatctg agcgtcctat tctcctctat tgttgaaacc ttttgatatt ttctgtatat
     2041 ccagtctttc ttagcatcta tatctgatat ggtggctgga tatattatct tgagcattac
     2101 actcccctcc caatcttgat aggtcgtttc gaattggaga atatttaaaa gcaacttttg
     2161 gtctactttt gggaaaagag tagctccttc ttgaagaaaa gagttatatg ctgtctttaa
     2221 ctttgatgtc gatgttgagg attcgctttg attgttaatt gaggtcttct ccatattaaa
     2281 cgattatgga tagcatttct tttaaccatt tagattattc aaattggtaa ttgtcttcaa
     2341 caaattttgt attttcgttt aaatatatta tacctcgttc aacaactttt actgatgatt
     2401 ttgggataag atatttgtca gtggttattg gtccaaatga aacgactata tgctggggct
     2461 ggattgcagt aactatgcct acttcctgcg cattcttaga ataaactggc ttatttacta
     2521 aaccttgcca atcgctaatt tcattattct ctctttccat agcttcaaaa ggtaaaatat
     2581 ttgatttaac acttttgaat aaaaaacaca aaactataat cttcttgttc gatgtcatgt
     2641 tactttcgac gactaacagt gtcaaaaaaa cagtattgtt aactatttct tgaatttatt
     2701 aaaggattac aagtctaggt ggacatatat atagcactgg ctttattctt gtgatattaa
     2761 cccttgggtg cagagtcact agtagaggaa gaataagaca ccggtttacc aaagaacgcc
     2821 ttaacgtagg gtctataaag ataatacaca actattgcgt tgatgataat atgaaatatc
     2881 gctccaatat tacaactgca atagaagcaa tacctaatgc aatcccaata aatgatagaa
     2941 taagagttat agtccaagcc catccttttc ctttccataa accataggcc atcacaaaat
     3001 atgcagtacc taatgcgata agtgcaacac ctatccctgc agacaaccct gccatgtcag
     3061 acagaaatgg agcagctac
//
LOCUS       DATABJ010000173         5265 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1223476, whole genome shotgun sequence.
ACCESSION   DATABJ010000173 DATABJ010000000
VERSION     DATABJ010000173.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5265)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5265)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5265
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1223476"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            307..1995
                     /locus_tag="VHF44_02780"
     CDS             307..1995
                     /locus_tag="VHF44_02780"
                     /inference="COORDINATES: protein motif:HMM:NF040138.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PKD domain-containing protein"
                     /protein_id="HEX2124508.1"
                     /translation="MNKAIHYNIKLPILLTLILLALSTITAIAVSGETNNIPGVKITS
                     HYQDQQVPIGELNVSGISTDNATSDCQVYLDWNDLKPFQAATATGPAGVNDYSTWSFL
                     YSKNYHMIKEGNNELTAKVSCGDIPGSTKYYSLNVTGITADTEDPLSYGSRDSIDPKK
                     VVAGMNNGSLLVEPENPPTSIISEYLDSNIEPTISSTRAEQANANNTKTYLLPAPSFR
                     ENRESNFGNTTSLEGRGQLKLIPPVADAGSDLIVNEGSSISLNASESIDPDGIILSYI
                     WKQNPHPLITLGDAETKIWTFTAPSVSSDTTFTFKLTVSDNNGLTATDSTSVLVRDLS
                     TSSPSVSSSNNAPVANAGPDLEVNENMSLSISASASSDPDIGDSLNYSWKQTAGNPVL
                     DISAGLNKEILTFTSPTVSVDTMFTFELIVTDKHGIMDTDVMNVLVRDIPSSSASNST
                     ISAPSNSENQASKMMVQIEVAEDPISLGDEQIVTVTVNDAISDETIKYADIDGMVTYP
                     SGDTTEFDDDDDGIVSYAWEVDEDSEPGTFTVDVNASAAGYEEISKSISFEAVV"
     gene            complement(2313..2588)
                     /locus_tag="VHF44_02785"
     CDS             complement(2313..2588)
                     /locus_tag="VHF44_02785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SemiSWEET family transporter"
                     /protein_id="HEX2124509.1"
                     /translation="MFDFLISATGILASIFALSSTVPQIIKGVKTKKMDDVSVWLILS
                     LIVGLSLWVIYGIGKSDVVIVGGNTVGVSLNVVLLFLKFRYSRNPIS"
     gene            2730..3389
                     /locus_tag="VHF44_02790"
     CDS             2730..3389
                     /locus_tag="VHF44_02790"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003905 - alkylbase DNA N-glycosylase
                     activity [Evidence IEA];
                     GO_process: GO:0006284 - base-excision repair [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HEX2124510.1"
                     /translation="MSYDNCKDDPLSIPNQKFYYRHTELVAKELVGKKLVRIIYESKD
                     KIYRLSGLIVETEAYGFDEDPASHAYRGLTPRNTPMFGEAGHAYIYFTYGNYYCVNVS
                     ARSSEVKAGAVLIRALQPLEGIHIMKILRNTNDELSLSSGPGKLTQALRIDKSLNGQD
                     MTNARAQLRIENGINPQRIISSSRIGIREAREKKWRFILANKDENSDVVSIYASRKKT
                     D"
     gene            3836..5125
                     /locus_tag="VHF44_02795"
     CDS             3836..5125
                     /locus_tag="VHF44_02795"
                     /inference="COORDINATES: protein motif:HMM:TIGR00306.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEX2124511.1"
                     /translation="MSSQLSSNIKIVYVLLDGVGDLPHHSLNDLTPLEAAYTPCMDSL
                     TRNGCMGQVISVGKGIAPQSDIAVFNMLGYSFKDGSYVGRGVIESLCCNIDFKEGDLA
                     MRGNFATVDDNLQIIDRRAGRIISKEEAASICKTLNEKIHFSDKSASVVIEPTIAHRV
                     TIRFRHDKIKLSEKISNTDPAYDRINGMGIAKPTIDKPHIGISEPQENTVAAKTSAKL
                     VNEFTDQTAKLLRNHPVNNARSKIGKKPINAVLARDSGNRYPDIEPIDRKYGINVACI
                     VDMPVEIGISKILGMRAFKAGDVTDYEQKAIVAAENLEKFNLIYVHIKGPDEYGHDGD
                     AKGKKMNIEDIDKRFFSTLTENLKIKDSTIIISADHSTPCVKKGHSDDPVPVLVSGNK
                     IKKDNSLRFTEKYAMKGSMGLLMGADVLSTAMRMITY"
BASE COUNT         1844 a          868 c          954 g         1599 t
ORIGIN      
        1 ttgtcatact gtgaatctta tcattttatt ttattatctt ccattaaatg catataaata
       61 ttgaatcaaa taataataat tgtcattatg tattgtgtta ctcatataga tactattagc
      121 cttattagat caattgaatc aagttcggag atataatgaa atccatattg ctcaattata
      181 tttattcgat tagaacaaat actgctttac catcgattaa cagattgtat atatattaga
      241 catcagctct aagcctttta acaacactac ttaaaaatat tttttatatt tgctttgtat
      301 cttgtgatga ataaagctat tcactataac attaaacttc cgattcttct aactttgata
      361 ttactagctt tatcgactat tactgccata gctgtgtctg gagagaccaa taatatacct
      421 ggcgttaaaa ttacctccca ttaccaagat caacaagttc caatcggtga acttaatgtt
      481 tcaggaattt cgacggataa tgcaaccagt gattgtcagg tttatttgga ttggaatgat
      541 ttaaaaccat ttcaagctgc tacagcaacg ggtccggctg gagtaaatga ttattctaca
      601 tggtcttttc tatattccaa aaattatcat atgataaaag agggaaataa tgaacttact
      661 gcaaaagtat cttgtggaga cattccaggt tctacaaaat attattcttt aaacgttact
      721 ggaataactg cagacacaga agatccatta tcgtatggga gccgtgattc tatagatcct
      781 aaaaaggtgg ttgcaggtat gaataatggc tcgttactag ttgaaccaga aaatcctcct
      841 acttctataa tatcagaata tcttgactca aatatcgagc caacgatctc tagtacaagg
      901 gcagaacaag caaatgcaaa taataccaaa acatatctac ttcctgctcc atcgtttcgt
      961 gaaaatagag agtcgaactt tggcaataca acctcgcttg agggaagagg acaactaaaa
     1021 ttaattccac ccgtagcaga cgccggcagt gatttgatag ttaatgaagg ttcaagtatt
     1081 agtcttaatg cttctgaaag tatcgatcct gatggtatta tcttatctta tatttggaaa
     1141 caaaatcctc atccactgat aactctagga gatgcagaaa caaaaatttg gacttttacc
     1201 gctccgagtg tatcttctga tactaccttc acgttcaaat tgacagtgag tgataataac
     1261 ggtttaacag cgactgactc tacaagtgtt ctagtaagag atttatctac tagtagtcct
     1321 tccgtctcat ccagtaataa tgcccccgtt gctaatgcgg gcccagattt agaagtaaat
     1381 gaaaatatgt ctctaagtat ttcagctagt gcgagtagtg atccagatat tggcgacagc
     1441 ttaaattatt cgtggaaaca gactgcaggc aatccagtgt tggatatatc agcaggactc
     1501 aataaagaga tattgacatt tacttctccg actgtgtctg tggataccat gtttacgttt
     1561 gaattgatag ttacagacaa gcatggtatt atggatacag atgtaatgaa tgtgcttgtc
     1621 agagacatcc cttcttcgtc tgcctcaaat agcaccatta gcgctccctc caatagtgaa
     1681 aatcaagctt caaaaatgat ggtacaaata gaagtggctg aggatccaat cagtctaggt
     1741 gatgagcaga tagtaacagt taccgtaaat gatgcaatat cagatgaaac aataaaatac
     1801 gctgatattg atggtatggt gacatatcct tctggcgaca cgacggaatt tgacgatgat
     1861 gatgatggaa ttgtttcata tgcttgggaa gttgatgaag attctgaacc tggcacattt
     1921 accgttgacg ttaatgcatc tgcagctggt tatgaagaaa tatccaaatc aataagtttt
     1981 gaagcagtag tataagaaga acgagaagaa gaaggagaaa agcaaaataa caaggaagag
     2041 gaagaagatg attaatagaa gccccttcgt tattttgaat atattatata caaaattatt
     2101 gataggatca tgagagagag gcatattcac tatcaaaatt ttcctcatat ggtttgtatt
     2161 tttctgtata tagagaatag ttaaggtaaa tgaatatctc tatttactac agaaaaggct
     2221 ctgaatgaag aaaacactcc tcaaattctt ttactacgtt cagtgatttt aacataaatt
     2281 tatttatctc gtttgttaat atcaattacg ttctagctaa taggatttct tgaatatcta
     2341 aattttagaa aaagaagtac aacatttaat gacactccca ctgtatttcc tccaacgata
     2401 acaacatcac ttttacctat tccgtatatt acccataatg ataacccaac tatcaaggac
     2461 aatatgagcc agacagacac atcatccatt ttcttagttt tgacgccctt gattatttgc
     2521 ggtacggtac tcgaaagggc aaatatgcta gccaatattc ctgttgcaga tattaaaaaa
     2581 tcaaacataa atgagtaaat tacttatagg tgcatttgat tgtttataga ttatattaaa
     2641 tgacatatct gctaatgcga ctttgtatca atagatagct ttgtcgtcga tcgaaaacca
     2701 aatatttgct attaaaagtt gacgtaccta tgtcatatga taattgcaaa gatgatcctt
     2761 tgagtattcc aaatcagaaa ttctattaca gacatactga acttgttgca aaagaattag
     2821 ttggaaaaaa acttgttcgt attatttatg aatcaaaaga taaaatatat agattatcag
     2881 gtttaattgt tgaaacagaa gcatacggtt tcgatgaaga tccggcaagt catgcctata
     2941 gaggacttac ccctcgaaat acgccaatgt ttggagaagc tggtcatgcc tatatttatt
     3001 tcacttatgg caattattat tgtgtaaacg tatctgcaag atcgtctgaa gttaaagcgg
     3061 gtgcggttct tattagggca ttacaaccat tggaaggaat acatattatg aagatcttgc
     3121 gtaatactaa tgacgaattg tcattgtctt caggaccagg aaaacttacg caggcgctaa
     3181 ggatcgacaa atctctaaac ggacaagaca tgacaaatgc aagagctcaa cttcgtatag
     3241 aaaatggaat aaatcctcaa agaataattt cctcttcgag aataggcata agagaagcta
     3301 gagagaaaaa atggcgattc attttagcaa acaaggatga gaatagtgat gtagttagca
     3361 tatatgcatc tagaaagaag acagactaat aataataata ggcagtaaaa taaaatttct
     3421 ttgatatgat attatggaca atgtttatac tttaacccaa actatttaca gctatcagtc
     3481 aatactttag aaataaaaag ctgataatac tgtctttgac gaattagtat agattcatga
     3541 taaggtattt ttaattcatt tgaatgataa attatctgat caatctatta ttcttatata
     3601 tatatatata tatatatata ttttatactc aaaagcatca cagacgatat agtcagaaaa
     3661 actcatcgtc gatccatatg actaaaggac actatcaact tatggttagg tgataattat
     3721 tttctattca taaatatcta aaaattacaa ttcgttacac tgaaaccata acatgatgtg
     3781 taattgtaat attccactac agataaattt acgagtaatg atctgaggtg tgtatatgtc
     3841 ttctcaactc agtagcaata tcaagattgt atatgttctt cttgatggtg ttggtgacct
     3901 tccgcatcat tccttaaatg atttgacacc tcttgaggca gcatacacac cttgcatgga
     3961 ctcacttaca agaaacggat gtatggggca agtgatcagt gtaggaaagg gaatagctcc
     4021 acaatctgac atagcggtat ttaatatgct aggctatagt ttcaaggatg gcagttatgt
     4081 tggcaggggt gtaatagaat cactctgctg caatatagat ttcaaagaag gtgacttagc
     4141 aatgcgggga aacttcgcta cagttgatga taatttacaa attatcgaca ggagagctgg
     4201 aaggattatc agtaaggagg aagctgcttc aatttgcaaa acattgaacg aaaaaattca
     4261 ttttagcgac aaaagtgcgt cagttgttat agagccaact attgctcata gagtaactat
     4321 ccgttttaga catgacaaga taaagttatc cgaaaagata tcaaatacag atccggctta
     4381 tgatagaatt aatgggatgg gaatagccaa acctacaata gataaacctc atattggtat
     4441 atcagaaccc caagaaaata cagtggcagc aaaaacatca gcaaaattgg tcaatgaatt
     4501 tacagatcag actgctaaat tactgagaaa tcatcccgtc aataatgccc gttccaaaat
     4561 aggaaagaaa cccattaatg ctgtacttgc tcgggattct ggaaacagat acccagacat
     4621 agaaccaata gatagaaaat atggcatcaa tgtggcatgt attgtagata tgcctgtgga
     4681 aattggtatc tccaaaatct taggaatgag agcttttaag gctggtgacg tcaccgacta
     4741 tgaacaaaaa gcaatagtcg cagcagagaa cttggagaag tttaatctta tctatgttca
     4801 cataaaagga cccgatgaat atggacatga tggcgatgca aaaggaaaaa agatgaatat
     4861 tgaagatatt gataagaggt tcttttcaac acttacagaa aacttaaaaa ttaaagattc
     4921 gaccataatt atttctgccg accattccac tccatgtgtg aaaaaaggac atagcgacga
     4981 cccagttcct gtattggtat caggaaacaa aatcaaaaaa gataatagtc taagatttac
     5041 ggaaaaatat gctatgaaag gcagtatggg attacttatg ggtgcagatg tgctttcgac
     5101 tgcaatgaga atgataacgt attgataatt tatcagtaaa tctcatatgc tagcgcccat
     5161 gagagtacct ttgcattgct cacaaacttg ttcgtctata tttgactcta tgctgtgatg
     5221 gacgtcacat ataataaatg tgtagcgcat ataattaaat aattc
//
LOCUS       DATABJ010000174         2908 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1006703, whole genome shotgun sequence.
ACCESSION   DATABJ010000174 DATABJ010000000
VERSION     DATABJ010000174.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2908)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2908)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2908
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1006703"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..919
                     /gene="amrS"
                     /locus_tag="VHF44_02800"
     CDS             <1..919
                     /gene="amrS"
                     /locus_tag="VHF44_02800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="AmmeMemoRadiSam system radical SAM enzyme"
                     /protein_id="HEX2124512.1"
                     /translation="LFAYGRVIAGNVDPIEKKPETHYRPGTAIFSIATTGCNWLCKYC
                     QNYDISQRRKIEGIQMTPDQVIDNAISYGAQGIAYTYNEPSIFIEFAKDCGIEAHKKG
                     IFNIFVSNGYDTPESVNMMRKFLDCITVDFKGSGKLEFVRQYIGIPNADPIFQSLKEI
                     RDKSSIHTEITDLIVPKVGDDLESARKLCKFIYNELGPDTPIHFLRFHPDYKMMEFDN
                     TPIETLEKHHAIAKEEGLRYAYIGNVPGHPLEHTYCPECKNIAIQRYGFSIGSWNLDE
                     NNCCKICSYPIPIIGKLTKIRKNRFQFLQ"
     gene            complement(1343..1870)
                     /locus_tag="VHF44_02805"
     CDS             complement(1343..1870)
                     /locus_tag="VHF44_02805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008138 - protein
                     tyrosine/serine/threonine phosphatase activity [Evidence
                     IEA];
                     GO_process: GO:0016311 - dephosphorylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dual specificity protein phosphatase family
                     protein"
                     /protein_id="HEX2124513.1"
                     /translation="MTKIGNAYRWMYGRVADRPTNFSWVIDGKLAGSGLPMNYSQFYW
                     LIKHSIKTIITVREVPLPSIWFTNNIDNTNNGNIDYLHLRVEDYGAPSIEEMDNTVDY
                     IQHQIDNEKPVMVHCAAGKGRTGTILAAYLLKKENLTAEQAIRKIRNIRPGSIQSNIQ
                     EMTISLYEKYLKGVK"
     gene            2239..>2908
                     /locus_tag="VHF44_02810"
     CDS             2239..>2908
                     /locus_tag="VHF44_02810"
                     /inference="COORDINATES: protein motif:HMM:NF024273.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DinB family protein"
                     /protein_id="HEX2124514.1"
                     /translation="MYQLIASLEELIKEFTTVRKNTINLFKPLKIEDAVIQSNDFGSP
                     PNWHIAHVTWFFQKILEKYGDKKLSNIKIHLDYLNSYYHKFGEILPKNERGRFPRPTV
                     EETLKYRTIIERQIIVFLRELELSNKISEETLYDIMLGNQHEMQHQELMVYDFQHYFQ
                     RFPYGYDNYKPIKVKNPPLAVEQPTGMVDIPEGIYELGFNGKDFCYDNDLPEHEVYLQ
                     PFKID"
BASE COUNT         1007 a          481 c          469 g          951 t
ORIGIN      
        1 gttatttgca tatgggaggg tgattgcagg taatgtcgat ccaatagaga aaaaacctga
       61 aacacattat agacccggta ctgctatatt ctcaatagct acaacaggtt gtaactggct
      121 ctgtaaatac tgccagaatt atgatatttc gcagcgtcgc aagatagaag gtatccaaat
      181 gactcctgat caggttatag ataatgcaat cagttatggt gcacaaggaa ttgcttatac
      241 atataatgaa ccctctatct ttattgaatt tgcaaaagat tgtgggatag aagctcataa
      301 gaaaggtatt ttcaacatct ttgtttcaaa tggctatgat actcctgagt cagttaatat
      361 gatgaggaaa ttcttagatt gtatcacagt agattttaag ggaagtggaa aactagaatt
      421 cgtaagacaa tatattggaa ttccaaatgc tgatccaatt tttcaatcac taaaggaaat
      481 aagagacaag tcaagtattc atacagaaat tacagatctt attgttccaa aggttggaga
      541 tgatctagag tctgcaagaa aactttgtaa atttatctat aatgaactgg gaccggatac
      601 tccaattcac tttttacgat tccatcccga ttacaagatg atggaatttg ataatactcc
      661 aattgaaaca ctcgaaaaac atcatgctat tgcaaaagag gagggattac gatatgccta
      721 tattggaaat gttccaggac acccattgga acatacatac tgtccggaat gcaagaatat
      781 tgcgatacaa cgttacggat ttagtatagg ctcatggaac ctggatgaga ataattgctg
      841 caagatctgc agttatccta ttccaataat aggaaaacta accaaaatta gaaagaatcg
      901 atttcagttc cttcagtaga atgagatcta attttctaaa aaatttctaa aatactaatg
      961 ttgtcagatt cctggattaa ctagaggaga gagaagatat atatcataat gaccaaaggt
     1021 gtatcaaata ataatatata taacatataa tgatcgatat aattctaaac acaataaaga
     1081 acttcaagaa cggctttctg atgataaaag agccttatac aaaaagcgac cacacacaat
     1141 gatattctaa ttcttctatg atcaccgtca tctgcatttt ctgcaacaag gataagagta
     1201 aaaatgacaa taatgataac aaaattggta tctcgatact ctacattcta aacgattcat
     1261 tgatcttcat aaagtatttt cagagttatt ctgtttatct attgaaaatc tttatagaaa
     1321 taatattgtg ttatttcata ctctatttta cacccttgag atacttctca tagagggaaa
     1381 ttgtcatttc ttgtatatta gattgaatcg agccaggacg aatatttcta attttcctta
     1441 tagcttgttc tgctgtcaga ttttcttttt ttagaaggta tgcagccaat atggttcctg
     1501 ttcttccttt accagctgca caatgaacca tgactggctt ttcgttatct atttggtgct
     1561 ggatataatc cactgtattg tccatttctt caatagatgg ggcaccgtaa tcttccactc
     1621 taagatgcaa ataatcaata ttgccattat ttgtattatc gatattgtta gtaaaccata
     1681 ttgatggcaa aggcacttct ctcacagtga taatggtttt aatgctatgt ttaattaacc
     1741 aataaaattg agaataattc ataggtaaac cgctacctgc aagtttacca tcaatgaccc
     1801 aactgaaatt ggttggtcta tctgccacac gaccatacat ccatctataa gcgttcccaa
     1861 tttttgtcat tgcaattaaa tcatcttaga ctacaaaata actgtttaga aattgtagaa
     1921 ctctattaat aattgcactc tcttgttgct cgttcatctc gaacttctaa aattacaaag
     1981 aacaaggatc attttaatga tttattctta ggtagtttgt ttatctataa ataatggaac
     2041 aaatcttcag ttaattcaat tttttttaca tttttttgga aaaattttgc ttgataagtc
     2101 ttaataagtt gatgcttgtt taataaattt aatttaattg accatcgata ttggatgcct
     2161 tgctactatt tttctttata atttaaatta atgaaagatg agataattta tacaccactt
     2221 tgcctattcc aatatatcgt gtatcaatta atagcaagcc ttgaagaact cattaaagaa
     2281 tttactactg tcaggaaaaa tactatcaat cttttcaaac ctttaaagat agaggatgct
     2341 gtcattcaat caaatgattt tggtagccct ccgaattggc acatagccca tgtcacttgg
     2401 ttcttccaaa aaatattgga aaagtatggc gataaaaaac tttcaaacat aaagattcac
     2461 ttagactatc ttaactccta ttatcataaa tttggtgaaa ttttaccaaa aaatgaaaga
     2521 ggaagatttc cacgcccaac tgtcgaagaa actttgaaat accgaactat tatcgaaagg
     2581 caaattattg tatttttaag agaactcgaa ttatcaaata aaatttctga ggagacacta
     2641 tatgacatta tgcttggaaa tcaacatgag atgcagcatc aagagctaat ggtctatgat
     2701 tttcagcatt attttcagcg ttttccatat ggatatgaca attataaacc tatcaaagta
     2761 aaaaatcctc ctttagccgt ggaacagcct acaggcatgg tagatatccc cgaaggaatt
     2821 tatgaacttg gattcaatgg taaagatttt tgttacgaca atgacttgcc ggagcacgaa
     2881 gtttacttgc agcctttcaa aatagatg
//
LOCUS       DATABJ010000175         1534 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1006754, whole genome shotgun sequence.
ACCESSION   DATABJ010000175 DATABJ010000000
VERSION     DATABJ010000175.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1534)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1534)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1534
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1006754"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            290..610
                     /locus_tag="VHF44_02815"
     CDS             290..610
                     /locus_tag="VHF44_02815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0048500 - signal recognition particle
                     [Evidence IEA];
                     GO_function: GO:0008312 - 7S RNA binding [Evidence IEA];
                     GO_process: GO:0006614 - SRP-dependent cotranslational
                     protein targeting to membrane [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle subunit SRP19/SEC65
                     family protein"
                     /protein_id="HEX2124515.1"
                     /translation="MKDYDHVILWLDYFNKNLSRSKGRKVKRDKSVFDPSLLDLVDAA
                     MEAGYNPTKEETNDQARYPRRSFVKSGYIMILKPSDVKKSVTMNTIADKMVQKRNKQK
                     SLHR"
     gene            738..1061
                     /locus_tag="VHF44_02820"
     CDS             738..1061
                     /locus_tag="VHF44_02820"
                     /inference="COORDINATES: protein motif:HMM:NF016308.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gar1/Naf1 family protein"
                     /protein_id="HEX2124516.1"
                     /translation="MNELGEVMHLSKSGRLIVKLQKDGKQIKSGQLLVDANGKRIGKV
                     IEVIGPVNAPYASVAPFTDRIKKIIGTNVFNGGVLAKRRDFRSHVRKQQKGFRRYNNL
                     GENQQ"
     gene            1058..>1534
                     /locus_tag="VHF44_02825"
     CDS             1058..>1534
                     /locus_tag="VHF44_02825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HEX2124517.1"
                     /translation="MTSTEYYTQCPECHSGLIQDYSKGEYICQKCGYVVMEQIDDYGP
                     ESHATDLDEKMKTIRASGSTSYSLHDYGLRTEIGFTSKDYSGRSIDHQMAEQMNNMRR
                     WHSRIRVSSTKERRLSNVLSKINETCSVMSLPKPLVETAAMLYRNYENKSEAKGKSI"
BASE COUNT          571 a          237 c          291 g          435 t
ORIGIN      
        1 gttatttgac tgatacctta atctattgat aatagactag aaaaaagtca cagaatatct
       61 aatacgactg ttggtaaatg tgttctccct agcagacaat agagcaaggt ataactaaat
      121 atgatttgca taatggtccg atattatgcg ctgataaaaa atcatccaat atgtagttct
      181 taaaaaagac aatattcatc tatgtaatac agttatcgct ctactaacag tattcactat
      241 tcatcggcag tcattaaatt aatattaatc ttatattgta tagccttagt tgaaagatta
      301 cgatcatgtt attttatggc ttgactattt taacaaaaat ttgtcgagga gtaaaggtcg
      361 taaagtaaaa cgtgataaat cggttttcga tcccagctta cttgatcttg tagatgctgc
      421 aatggaggct ggatataatc caacaaaaga agaaacgaat gaccaggcca ggtatccacg
      481 gagatccttt gtaaaatcag gttatattat gattctgaaa ccttctgatg tgaagaaatc
      541 tgtaaccatg aacacaattg cagacaaaat ggtgcaaaag agaaataaac aaaaatccct
      601 tcatagatag aatgtaaaaa tacaatttta tatcccagag atcatatctg tatttaatac
      661 atattttgtt tatcaataaa cttaattatt cttgacagaa cagaatgata ataagtaaaa
      721 ctttagagtg attgaaattg aacgaattag gggaggttat gcatttatca aaaagcggaa
      781 ggcttattgt caagcttcaa aaagatggta aacaaattaa aagtggacaa ctgctagtcg
      841 atgctaacgg aaaacgcata ggcaaagtaa ttgaagtaat tggtcctgta aatgcgcctt
      901 acgcatcggt agcaccgttt actgacagaa taaaaaaaat tattggcact aatgtattta
      961 atggaggagt tttggctaag agaagagatt ttcgatccca tgtccgcaag caacagaaag
     1021 gctttcgacg ttataataat cttggagaga atcagcaatg acttcaacag agtactatac
     1081 gcagtgtcca gaatgtcact caggactaat tcaagattat agcaagggtg aatacatttg
     1141 ccaaaaatgt ggctatgtag taatggaaca gattgacgat tatgggccag aatcccatgc
     1201 aactgacctt gatgagaaaa tgaaaacgat ccgtgccagc ggatctacaa gctactcatt
     1261 acatgattat ggtttaagaa ctgaaatagg ttttacctct aaagattata gtggaaggtc
     1321 gattgatcat caaatggcag agcagatgaa taatatgcga agatggcatt caagaatcag
     1381 agtttcctct acaaaagaaa gaaggctatc aaatgttcta tctaaaatta atgagacttg
     1441 ctctgtaatg tcactcccca agccattggt agaaacagca gcaatgcttt acagaaatta
     1501 tgaaaataaa agtgaagcaa agggaaaatc tatt
//
LOCUS       DATABJ010000176         3549 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1653337, whole genome shotgun sequence.
ACCESSION   DATABJ010000176 DATABJ010000000
VERSION     DATABJ010000176.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3549)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3549)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3549
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1653337"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..226)
                     /locus_tag="VHF44_02830"
     CDS             complement(<1..226)
                     /locus_tag="VHF44_02830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124518.1"
                     /translation="MRNPFRSSRSPYERRRRATIEGEPLENVSGRPFVRIVIPAIIGI
                     IILLFVVSASVKIVDAGHRGVLIQSGNVATD"
     gene            814..1968
                     /gene="fbp"
                     /locus_tag="VHF44_02835"
     CDS             814..1968
                     /gene="fbp"
                     /locus_tag="VHF44_02835"
                     /EC_number="3.1.3.11"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004332 - fructose-bisphosphate aldolase
                     activity [Evidence IEA];
                     GO_function: GO:0042132 - fructose 1,6-bisphosphate
                     1-phosphatase activity [Evidence IEA];
                     GO_process: GO:0006094 - gluconeogenesis [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-1,6-bisphosphate aldolase/phosphatase"
                     /protein_id="HEX2124519.1"
                     /translation="MRITLSAIKADIGGIGGHTRPSEELVETVKNFISRKSSLLVDYY
                     VGYTGDDIHIIMTHTLGTDNEQIHKLAWDAFVEGTRVAKEQGLYGAGQDLLKDAFSGN
                     VRGMGPGVAEIEMEERPSEVFCIFAADKTEPGAFNLPIWRIFVDARSNTGLLINEKLA
                     AGVTIRIMDVMNGKIADLRMWEDKPELEASLMYPGRYVVDSVMSSDGEQILSASTDRL
                     HNIAGTYVGKDDPIAIVRTQKNFPATEEAGSAFNDPHFVAGNTRGSHHMPLMPVRLNS
                     AASLNYSIPIVSCLVFSMHNGKLTGPHDGFGTADWDLQRMWASERAMLMRNQGFIHPA
                     TLVPEELEYNKGYEARMSKLNEKFRDIDNVKFQETARPKEQIKDEKTFHY"
     gene            1946..2629
                     /gene="tpiA"
                     /locus_tag="VHF44_02840"
     CDS             1946..2629
                     /gene="tpiA"
                     /locus_tag="VHF44_02840"
                     /EC_number="5.3.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004807 - triose-phosphate isomerase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEX2124520.1"
                     /translation="MKRPFIINFKNYLEVSADHTIRLAKIAEKVADNLRTEIVIAPPQ
                     PSLLAVTQNVKIPVICQHVDDSQIGSTTGFFIPEIAKSYGAVGSLINHSEHRLDKKAI
                     SNLVERLHRLEMISIVCAQNAQEVAELVDLAPDFIAVEPPELIGSGKSVSKVNPLIII
                     DSLQAVTKNATSTKMICGAGITEKSDVTSALQLGADGVLVASSIVKATSWSEKISDLA
                     SGFEQLQVK"
     gene            complement(3152..>3549)
                     /locus_tag="VHF44_02845"
     CDS             complement(3152..>3549)
                     /locus_tag="VHF44_02845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124521.1"
                     /translation="VELFANTISYTRIGIMLLVHVALMGTANGGVEHFMSQGSPGIAI
                     GLLFLGNVGVMMIEGLLVYIQALRLHLYEWFTKFYDGTGTSFKKIVPEMLYTSIVWET
                     SIDKKILDKQRVDSKSMEREILDKESPKV"
BASE COUNT         1192 a          665 c          654 g         1038 t
ORIGIN      
        1 catctgtagc cacattacca gattgaatca aaacacctct atgacctgca tcaacgatct
       61 ttacacttgc actaactaca aacaatagta ttataatgcc tattatagca ggaattacta
      121 tcctaacaaa cggtcgacca cttacgtttt ccagtggctc tccttcaatg gtagctcttc
      181 ttcttcgctc atagggtgat ctagaggacc gaaatggatt tctcacaatt aatagtatat
      241 cgaacagaat ttaagtttta ttctttaggt atagttattg ataatgactt tgacagcatc
      301 gtactatata atgagtaatt actttgagaa actatcgtat actgagtttc aatgagcata
      361 tataatcacg atgtttcata tggattcaga agatgatagt atcatctgta cattactact
      421 tcattgttac ataagaaaat gtacaatgcc tcaaataatt tcggatctta tgtatctgtt
      481 ctgatatttc ttttatctag tcgatacttc aagccaaata cttagtagta tagatagaat
      541 ccagattctt cgatactata taatttcaaa cgttatagaa gaccaaactt agtgatactg
      601 cgatacattc tatcgtattg cgagaagatt tttttccacg gagacagcat accaaaaagt
      661 gtacaaaaag tatcagttaa gatgcttcac taattgacat ggcccataat atcaatacct
      721 tttatctaat gtctttttgc cgtcgctata ttgcgaaata ccttttgtaa ataaatccga
      781 aaatttttaa acaacagata atgaacactc gctatgcgaa taacattatc tgcgattaaa
      841 gcagacatag gaggaatcgg tggacatact cgtccaagcg aggagcttgt tgaaactgta
      901 aagaacttta tttcgaggaa atcatccctg ctagtcgact actatgtcgg ttacacagga
      961 gatgatattc acattatcat gactcataca ctcggtacag ataacgaaca gattcacaaa
     1021 ctagcctggg atgcttttgt cgaaggaact agagttgcaa aagaacaggg tctatatggc
     1081 gctggccaag acttgcttaa ggacgcattt tcaggaaatg taagagggat gggacctggt
     1141 gtagccgaaa tagaaatgga ggaaagacca agcgaagtat tttgtatatt tgcagctgac
     1201 aagacagaac cgggtgcttt taacttgcca atatggagaa tatttgttga tgcaagaagc
     1261 aacactggcc tccttattaa tgagaagctg gcagctggcg taaccatcag aatcatggac
     1321 gtaatgaatg gtaagatcgc tgatctcaga atgtgggaag acaagccaga actagaagct
     1381 tcactaatgt accctggaag atatgttgtg gattctgtaa tgtcctcgga tggcgagcag
     1441 atcttatcgg cttctacaga tagattacat aacattgcag gcacatacgt aggaaaagat
     1501 gatccgatag ccattgtcag aacgcaaaag aattttcctg ctaccgagga agcaggcagt
     1561 gcgtttaacg atccccactt tgtcgcaggg aacaccagag gaagtcacca tatgccactt
     1621 atgcctgtca gattgaattc tgctgcaagt ctaaactatt ctatccccat tgtgtcatgt
     1681 ttggtgttta gtatgcataa tggcaaactt acaggtccac atgatggctt tgggacggcc
     1741 gactgggact tgcaaaggat gtgggcatct gaaagagcaa tgcttatgcg taaccaagga
     1801 ttcattcatc cagctacgtt ggtcccagaa gaattagaat acaataaagg atacgaagca
     1861 agaatgtcca agttgaacga aaaattcaga gacatagata atgtcaaatt tcaggaaact
     1921 gcaagaccaa aagagcagat aaaagatgaa aagacctttc attattaatt ttaaaaacta
     1981 tcttgaagtt tctgcagatc atactattag acttgcaaaa atagctgaga aggtggcaga
     2041 taaccttcgg acagaaattg taattgcacc tccccaaccc tcgctgttag ctgtaaccca
     2101 gaacgttaag attcctgtta tatgtcagca cgtagatgac tcccaaattg gttcaactac
     2161 tggattcttc attcccgaga tagcaaaatc ctatggagca gttggctctc tcataaatca
     2221 tagcgaacat agactagata aaaaggctat aagcaattta gtcgagcgct tacaccgttt
     2281 agagatgata tctatagtat gtgcacaaaa cgctcaggaa gttgcagaat tagtagattt
     2341 agcacccgat tttattgctg ttgaaccgcc agaattaata ggttcaggaa agtcagtttc
     2401 gaaagtaaat ccattaatta ttattgattc tttacaagca gtgacaaaga atgccacctc
     2461 cactaagatg atttgtggtg ctggaataac agaaaaaagt gatgtgacta gtgctcttca
     2521 attaggcgct gacggtgtat tggtcgcaag cagtatcgta aaggcaacat cttggtcaga
     2581 aaaaatatca gatctcgcct cagggttcga acagcttcag gttaaataag aacaaacttt
     2641 ttcttcataa attgagttgt atcattaaag tcattaaata attttgaata ttattgttca
     2701 acaataatcg aatttgaata ctgtatgata aaccgcccac aatatcacaa tagaaaagca
     2761 ttagcaacgt tgacgctttt tatcgggtat agtatatgac ctaaatatcg cattagaaac
     2821 ctgggaaaaa tcggaaagct ctaggagttc agaattaata tatattcaaa gatacactta
     2881 aagttaataa ttctttgaca tataattttg ccacaactgt ctacatgact accgaatcag
     2941 tgaataaacg atgagaaaat atataatatt aatcaaatta taatcgtgtg ttatctccaa
     3001 aaagatattc aataacctct atacatatta cctggcggca catttaaatt agtattcata
     3061 taaacaaaat ttacatcgac caaaccgatg gggaacaaaa tcctgattaa ggtgtaattc
     3121 acgttacact ttagtcaggt tctatttaaa attatacctt cggactttct ttatcaagaa
     3181 tttccctttc catgcttttg ctatcaactc tttgcttgtc aagaattttc ttatcgatgc
     3241 ttgtttccca aacaatgctc gtatagagca tttcagggac aattttttta aaagatgttc
     3301 cagtaccatc atagaatttc gtaaaccatt cataaagatg taatctgagt gcctggatgt
     3361 atacaagtaa tccttcgatc atcatgactc caacattacc taaaaataat agacctatag
     3421 caattccagg actaccctgc gacataaaat gttcaacgcc tccatttgca gtacccatta
     3481 aagcgacgtg cacaagaagc atgataccaa ttcttgtgta acttatagta tttgcgaaaa
     3541 gttcaacta
//
LOCUS       DATABJ010000177         2227 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1008739, whole genome shotgun sequence.
ACCESSION   DATABJ010000177 DATABJ010000000
VERSION     DATABJ010000177.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2227)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2227)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2227
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1008739"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1003
                     /locus_tag="VHF44_02850"
     CDS             <1..1003
                     /locus_tag="VHF44_02850"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000156 - phosphorelay response regulator
                     activity [Evidence IEA];
                     GO_function: GO:0004673 - protein histidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0007165 - signal transduction [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="HAMP domain-containing sensor histidine kinase"
                     /protein_id="HEX2124522.1"
                     /translation="IKLSPHKTPEAATVSSSLLFIRDKHDIFSFSIDVHKYDKENIDY
                     NEDKNKNSIFSVNDWLYSKNVSLVKNSVSCFDIVWEEKENYDKMIEEKKHSDLLVDLI
                     THDIGNYHQVIQTSLGLVIFLLEKNKTSVLSPQDSEKIFSYLTTAKNALMKSRSLVDN
                     IRRLERIYGQKDLKLVLRNLPEAINNAYSTVEQTLYDNNPYGKKISISMTHGHAKDIN
                     IMAEDLLDEIFINLFSNAVKYTDSSEVKIDVMIKDYFIAEAKYWMITISDYGKGIPDS
                     MKKELFERFYYKAKGSGLGLSIVRALVERYRGKIWIGDRVYKDYTKGTTFGMIFPAA"
     gene            complement(1076..1618)
                     /locus_tag="VHF44_02855"
     CDS             complement(1076..1618)
                     /locus_tag="VHF44_02855"
                     /inference="COORDINATES: protein motif:HMM:NF025774.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MEDS domain-containing protein"
                     /protein_id="HEX2124523.1"
                     /translation="MAQRLQTLEVGNHVIAVYHNKEEKFNEALAFLRDGLQRNELIML
                     LTTDLTKDEICAKMRTEWKVDVTKLESKGDIIIRTTEEWYFPDGVPNIQRTMALWSTL
                     VENSINKGKRGLRVFGDMVAFFKNGFSKELFDYELYLEQRFNFPAIGICAYDSRDIAN
                     MTLEQIRQLQQHHNPVWMQD"
BASE COUNT          780 a          315 c          383 g          749 t
ORIGIN      
        1 tataaaatta tcaccgcata aaacaccaga agcagcaaca gtatcaagtt cattgctctt
       61 tatcagagat aagcatgata ttttttcttt ttcaattgat gtacacaaat atgataagga
      121 aaatatagac tataatgagg ataaaaataa gaatagtatt ttttctgtta atgattggct
      181 gtattcaaaa aatgtctctt tagtcaagaa ttcagtttct tgttttgata ttgtatggga
      241 agaaaaagaa aattatgata aaatgataga agaaaaaaag cactcagacc ttttagttga
      301 tttaatcaca catgacatag gaaattatca tcaagtaata caaacaagtt tgggacttgt
      361 aatttttcta cttgagaaaa ataaaacaag tgttttatca ccacaagaca gcgaaaaaat
      421 tttttcttat cttactactg caaaaaatgc ccttatgaaa agcaggtcac ttgtagacaa
      481 catacgtaga ctagaacgaa tttatggaca aaaggattta aaattggtac taaggaacct
      541 tccagaagca attaacaatg cgtattctac agtagagcaa acattatacg ataacaatcc
      601 ttatggtaaa aaaatttcta taagtatgac acatggtcat gctaaggata taaatataat
      661 ggctgaggat ttgcttgatg aaatcttcat aaacttattt tctaatgctg taaaatatac
      721 tgattcatca gaagtaaaaa ttgatgtaat gataaaggat tattttattg ctgaagcaaa
      781 gtattggatg ataaccatat ctgattatgg caaaggtata ccagattcga tgaaaaagga
      841 gttgtttgaa cgtttttatt ataaagcgaa aggaagcgga ttaggtttat ctatagtgag
      901 agcattagtt gaaagataca ggggaaagat ttggattgga gatagagtat acaaagacta
      961 cactaaggga actacatttg gaatgatttt tccagcggct taagaatagt atatactaat
     1021 aggattattc tctttatgtc ttcatatagt aattatatta ttgttattaa tgctactaat
     1081 cttgcatcca gactggatta tggtgttgct gcagttgtct tatctgctct aatgtcatat
     1141 tagcgatatc tctagaatca tatgcacata ttccaatagc aggaaagtta aatctttgtt
     1201 ctaaatataa ttcataatcg aataattctt tgctaaatcc attcttaaaa aatgctacca
     1261 tatctccaaa tactcttaat cctcttttac ctttattaat tgagttttct actagcgtag
     1321 accataatgc cattgttcgc tgaatatttg gtacgccatc tgggaaatac cattcttcag
     1381 tagttctaat gataatatct ccttttgatt caagttttgt aacgtcgact ttccattcag
     1441 ttctcatttt ggcacagatt tcatcttttg taagatcggt agttagtagc ataataagct
     1501 catttctttg caggccatcc cttagaaagg caagggcttc attaaatttt tcttccttat
     1561 tatgatagac tgcaatcacg tgatttccta cttcaagtgt ctgtagtctc tgtgccatct
     1621 aactaattaa ataggtggta cgatataata gttgtcttaa actatgcttc tgatttgttt
     1681 aaagtgctgc tgattgttta gactgatttt gattttattt agtgtaatac caagcagatt
     1741 aatgtttggg atgttgtcta acaattagtg tatgaaaata tcagaatcta ttagatgagt
     1801 tgcattgggt tttctttctt tgattagttc tatgtaagtg acttggggac ttgaaagaga
     1861 ggattcttca aactcagtac taaaaaagag aaaattatga aaaaggtgtc tttggtgaat
     1921 gtactacaca aatatcatag ctgcaatata acaattgctt ttttcaggac aaccaccaac
     1981 acctaatgcc aaagaagaag gcgataacaa gaaaatttcc atgatcacat aacaaaaaat
     2041 ctcacaatat aattacatgg gatatggaat agagtattga tctgttgagg ttacctgtga
     2101 taataggagc cagtatggaa tagaggctta tgaggatgaa gctatggatc tctataaata
     2161 actatacaaa tgctttgtgt atggtatacc tcttaaagaa tcaaagaatc aatgttgata
     2221 gaataag
//
LOCUS       DATABJ010000178         2358 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1655336, whole genome shotgun sequence.
ACCESSION   DATABJ010000178 DATABJ010000000
VERSION     DATABJ010000178.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2358)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2358)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2358
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1655336"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(120..521)
                     /locus_tag="VHF44_02860"
     CDS             complement(120..521)
                     /locus_tag="VHF44_02860"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124524.1"
                     /translation="MGHNGCYHPYARAIENNFLGPISGENPTNGITNSTNFPPFMRNQ
                     LDRLCSLFNLANPAVRKPPPSLPIKANARRDKNNGDMKVRGSRRVNSIPIKAKYIEAK
                     DQMKSQKQLPMLDQNLLTNNRLKIPIQKRKH"
     gene            649..1074
                     /locus_tag="VHF44_02865"
     CDS             649..1074
                     /locus_tag="VHF44_02865"
                     /inference="COORDINATES: protein motif:HMM:NF025819.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mov34/MPN/PAD-1 family protein"
                     /protein_id="HEX2124525.1"
                     /translation="MFFRKKEKQEVAKRHVIMTRRVADGIITYAKSWHPQEGILILQG
                     KITKGDIVADGLIIPPFSLHGPYYSGFSGNELPFDLSYIGTAHSHPSGSNKPSLEDLN
                     NYYGLVSIIISYPYEDNTIGAFDRNGRNMELKIISGDTN"
     gene            1418..1738
                     /locus_tag="VHF44_02870"
     CDS             1418..1738
                     /locus_tag="VHF44_02870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124526.1"
                     /translation="MTLEQLRAKAFFQNTIDVWIMLCEEKGWDWYNINAYRKFIAHLN
                     SKEIKMQKFPLCIKESGGMYERGKDKTKFLDELSHFSTYDSAAYTIKLSTDVLASIRS
                     FNYN"
     gene            2086..>2358
                     /locus_tag="VHF44_02875"
     CDS             2086..>2358
                     /locus_tag="VHF44_02875"
                     /inference="COORDINATES: protein motif:HMM:NF013213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016788 - hydrolase activity, acting on
                     ester bonds [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEX2124527.1"
                     /translation="MLFDSHIHLADEEFTGYIEFIINNLRALKINACSVTVNNETSLR
                     NLQYFNHSTKDVVTKFIGIHPEFASTEDIDKFIEIFNENSSSIEGIG"
BASE COUNT          780 a          357 c          428 g          793 t
ORIGIN      
        1 tccaaagaaa gctagcatcc attattttcc aatatgaaaa caaatgaaaa tcatttggat
       61 attgctgaat acgatggtta tgacattact tgtgatctga agttgggttc attttattat
      121 tagtgctttc ttttctgaat gggaattttt aaacgattat tggtaagaag attttgatct
      181 agcataggca attgtttctg tgacttcatt tgatcttttg cttcaatata ttttgcttta
      241 ataggaatag aatttactct ccgggatcct cttactttca tatcaccatt attcttatct
      301 cttcttgcat tggccttaat tggcaaacta ggaggaggct tccttactgc aggattggct
      361 aaattaaaca aggagcacag tctatctagc tggtttctca tgaacggagg aaaattggtt
      421 gaattggtaa ttccgttcgt tggattttct ccagatattg gacctagaaa attattctct
      481 attgctcttg cataaggatg ataacaacca ttatggccca tttatcacat tggtctttta
      541 tcgaaattaa gacttgaaca gagtatcctc ctttagagga gggaggttat aacttaaaga
      601 acaccttgaa ttaaatatta gaattaaaac ttaataaagt gagtactgtt gtttttcaga
      661 aagaaggaga aacaagaagt agccaaaagg catgtgataa tgactcggcg tgtagctgat
      721 ggaataatca catatgctaa aagttggcat ccacaggaag gaattttaat tctgcaaggt
      781 aaaatcacga agggagatat tgtagcagat ggtttgataa ttccgccttt ctcattgcac
      841 gggccttatt attctggatt ctcgggcaat gaattgcctt ttgacctatc ctatataggt
      901 acagctcatt ctcatccaag tggctcgaat aaaccttcac tagaggattt aaataattat
      961 tatggtttgg tctcgataat tattagttat ccatacgaag ataacactat tggagctttt
     1021 gatagaaatg gtaggaatat ggaactgaaa atcatatcgg gtgacacaaa ttgagatctt
     1081 atagataact aataaggaat ttgtcagttt ggctctttaa atgacttgga tgagccaaca
     1141 gacggatgga taattgtatc acttgccata agcttaatcc tagatttaat ctttattttt
     1201 atctctctcc cattagtgac ggcaatttca ctaatagtgt ttattatata tatgatgaaa
     1261 caacaatgat acgtagggat atgggcaagg atagcatcta cgatagagtg ctggcgagag
     1321 atggaataga gtatgcatgt atttcttgca gttatgactt aaaaagcaga gattatcctc
     1381 actgtgggtc agaaaaatgg agagtgaatt tctaaacgtg acactagaac aattacgtgc
     1441 aaaagctttt tttcaaaata ccatcgatgt ttggataatg ttgtgcgagg agaaaggatg
     1501 ggactggtat aatatcaatg cttacaggaa gtttattgct catctcaatt caaaggaaat
     1561 aaaaatgcag aaatttcctc tttgtataaa agaatcaggt ggaatgtatg aacgtggcaa
     1621 agataagacc aaattccttg atgagctatc tcatttctcc acttacgact ctgccgcata
     1681 tacaataaaa ttaagcacag atgttcttgc ctccataaga tcgtttaatt acaattagaa
     1741 tttttggaga atcattatat ggtcaaatta ccgtggttag aatttaatat tgtattgaat
     1801 tcccaatact ctctgcaact atatattttt acttcgataa agattttaat gaattgacag
     1861 aataaaaaat aataaaaatt gtatagatct ctttttatta cttattttat cttctccaaa
     1921 taaaatatac tcaacctgac tgatatgata atgctctaag tatgcgtcca aaaaagccca
     1981 ttagataata ttattggttt cttctttgat tctaaaagaa cgaaatagta catgctcaga
     2041 gcctgttgaa taaatatatt gttcttacga tcttatctgg ccagtatgtt atttgattcg
     2101 catattcatt tagccgatga agaatttaca ggttatatag aatttatcat aaataatttg
     2161 agggctctaa aaataaatgc atgttctgtt acagtaaaca acgagacttc gcttagaaac
     2221 ctccaatatt ttaaccattc gacaaaagat gtggtaacta aatttatagg tatacatcca
     2281 gaatttgcta gtaccgaaga tattgataaa tttattgaaa tatttaatga aaatagttcc
     2341 tcaattgagg gtatcggt
//
LOCUS       DATABJ010000179         2463 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1228611, whole genome shotgun sequence.
ACCESSION   DATABJ010000179 DATABJ010000000
VERSION     DATABJ010000179.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2463)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2463)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2463
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1228611"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(161..1450)
                     /gene="hisD"
                     /locus_tag="VHF44_02880"
     CDS             complement(161..1450)
                     /gene="hisD"
                     /locus_tag="VHF44_02880"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004399 - histidinol dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEX2124528.1"
                     /translation="MIKTIIVKNTKSDAEKLRNASNSISNELIQRIKVIMEDIEKYGD
                     SSIMDYEEKFDGIRLNSLKVTDEEIREAYNKVTKKQIQSIKMIRNSLIKTEVALFKQL
                     QKISLSSYGVKIQRMIQPISSVGCYIPGGKARYPSTMLMCAVPAQVAGVKRIVAISPP
                     LKDGKIDPLTLVSAEICGVDEFYKIGGAQGIAALTFGTQSINKVSKIVGPGGVFVSIA
                     KTLASARVSIDMVAGPTELVVYADAKTDARLIARDMISQAEHSYDTFCGLVTTSKELA
                     GQVNTEIQSLLNNNSINRIDIVKRSLVENGFFAICKNESSAIEFINEVAPEHLEIMAK
                     KARTISKQITSAGLILIGSFTPSSASDYCLGSNHILPTMGFGKSRASLSVLDFIKIVN
                     KVEATRTGLKKVESKIREIALAEGLMNHYEAVKERIK"
     gene            complement(1447..>2463)
                     /gene="hisG"
                     /locus_tag="VHF44_02885"
     CDS             complement(1447..>2463)
                     /gene="hisG"
                     /locus_tag="VHF44_02885"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: protein motif:HMM:NF013773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003879 - ATP phosphoribosyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0000105 - histidine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEX2124529.1"
                     /translation="KYISDNRFCLFIHMHTVKFAIPKGSIEDATFRILEEAWQTVSGR
                     GRTYRVKLSDSEIDVKILRPQEIPTYVQEGFYDVGITGKDWIREAKADVKILLDLEYG
                     RVKQVIAVPQSFQFNDLTGLITEFAKNNKTLRISSEYLTTTASHIKSNLAYRKYFGGS
                     DPMIITPWLRVGENKHVQIFLSFGATEAKPPEDVDAIFDITETGSTLAQNNLKIIDRV
                     MESSAVLVANKNALKDPKKREKIADMIALLKGVVEGRKKLHIFVNVKKKNLNKLLKNL
                     PALKKPTISPLSEDGWYGVNTIIDKTEFIKIVPIMRKMAQGLVVMEPRQILPLLEINL
                     DEYS"
BASE COUNT          701 a          492 c          377 g          893 t
ORIGIN      
        1 gtgtatttta gagcttgtaa agcaatttct gaaataaagt ttttatttaa tagaaaattt
       61 tcattggaat ctaatttaat agagttttta attttttctg gcctgatgta attatcaagt
      121 ttggagagcc gttctaactt ctcggagaac caaggcctca ttattttatt ctttccttta
      181 ccgcttcgta gtgattcatc aaaccttcag ctaatgcaat ttccctaatt ttagattcta
      241 ctttcttcaa acctgttcta gttgcttcta ctttatttac tatctttata aaatcaagga
      301 cagacaatga tgctctagat ttaccgaagc ccatggttgg aagaatatga ttagaaccca
      361 aacaataatc actagctgaa gatggagtaa aacttcctat caatatcaaa cctgcggatg
      421 taatttgttt tgaaattgtt cttgctttct ttgccattat ctccaaatgt tctggtgcta
      481 cttcatttat gaattctatt gctgaagatt catttttaca gattgcaaag aatccattct
      541 ctaccaaact tcttttgacg atatcaattc gattgataga gttattgtta agaagggatt
      601 ggatctctgt attaacttgt cctgctaatt cctttgatgt cgtgacaagc ccacaaaatg
      661 tatcgtaact atgttctgct tgcgatatca tatcacgtgc aattagcctt gcatcagtct
      721 ttgcatctgc atatactact aattcagtag gaccagcaac catatctatt gagactctag
      781 cggaagcaag agttttggca atagagacaa acacgcctcc tggaccaacg atcttgctta
      841 ctttgttgat actctgagtt ccaaaagtca aagccgcaat tccctgtgca ccacctatct
      901 tatagaattc atcaacaccg caaatttctg ctgatacaag agtcaaagga tctatctttc
      961 catcttttaa tggtggagat attgccacta ttctctttac tccagccact tgtgcaggga
     1021 cggcacacat tagcatcgta ctaggatagc gagcttttcc accagggata tagcatccaa
     1081 cactagagat aggctgaatc atacgctgaa tctttactcc gtacgatgaa agtgaaattt
     1141 tctgtaactg cttgaaaagt gcaacttcag tcttaattag actatttctt atcatcttaa
     1201 tagattgaat ctgttttttg gtaaccttgt tatatgcctc ccttatttct tcatctgtaa
     1261 ctttcaatga atttaaccta atcccatcaa acttttcctc ataatccata atagatgagt
     1321 cgccatattt ttctatatct tccattatca cttttatcct ttgaattaat tcattagaaa
     1381 tgctattgct ggcatttctt aatttttcag cgtcagattt tgtgttctta acaataattg
     1441 tctttatcaa gaatactcat ctaaatttat ctcaagcaga ggcagaatct gtcttggctc
     1501 cattacaact aagccttgag ccatctttct cattatagga actattttga taaattcagt
     1561 cttatcaata attgtattta ctccatacca cccatcttca cttaatgggc taattgttgg
     1621 tttttttaat gcaggcaggt tttttagcaa tttattgaga ttttttttct ttacattgac
     1681 gaaaatatga agctttttac ggccttctac tacccctttt aataatgcaa tcatatctgc
     1741 tatcttctct ctttttttag gatccttcag agcattctta tttgcaacga gaacagcaga
     1801 agactccata actctatcaa ttatctttag attattttgt gcaagagtgc tcccagtttc
     1861 ggtaatatca aaaattgcat caacatcttc tggtggcttt gcctctgtgg ctccaaagga
     1921 aaggaatatc tggacatgtt tattctctcc cactcttagc cacggagtaa tgatcatagg
     1981 atcgctacct ccaaaatatt ttcgataagc aaggttagat tttatatgag aagctgtagt
     2041 agtgagatat tctgaagata tccttagagt tttattattt ttggcaaact ccgtaattaa
     2101 tcctgtcaag tcattgaatt gaaaactttg tggaactgca attacttgtt ttactcgacc
     2161 atattctaaa tcaagtaata ttttgacatc cgctttggcc tctctaatcc agtctttgcc
     2221 tgtaatccca acatcataga acccttcttg aacataagtt ggaatttctt gtggtcttaa
     2281 tattttgaca tctatttcag aatcactgag ttttactcta taagtacgcc cacggccact
     2341 aacggtttgc catgcctctt caagaattct aaatgtcgca tcctcaatgc taccttttgg
     2401 gattgcgaat ttcacagtat gcatatggat aaataagcaa aatctattgt cggatatata
     2461 ttt
//
LOCUS       DATABJ010000180         3645 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1420016, whole genome shotgun sequence.
ACCESSION   DATABJ010000180 DATABJ010000000
VERSION     DATABJ010000180.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3645)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3645)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3645
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1420016"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(512..832)
                     /locus_tag="VHF44_02890"
     CDS             complement(512..832)
                     /locus_tag="VHF44_02890"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124530.1"
                     /translation="MKQPLEWLILQVPDKVAVSIIGKDIIYSGYIHKKISQCLNRICC
                     CHTENNTHMHPEDLNNIWICSNCGTAFAFHSDTMDHLKTTRHKHIKKFDLNTGTLIEV
                     RAMV"
     gene            complement(867..1130)
                     /locus_tag="VHF44_02895"
     CDS             complement(867..1130)
                     /locus_tag="VHF44_02895"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2124531.1"
                     /translation="MVSDVRMPALTGFQLVRRVKDLRPEMKVIMMTMFEVNKGEFEAV
                     FPSTPIDGVIRKPFTSSQLVEKIRGFLGTMTQGPTRLTDGNKV"
     gene            complement(1164..1340)
                     /locus_tag="VHF44_02900"
     CDS             complement(1164..1340)
                     /locus_tag="VHF44_02900"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124532.1"
                     /translation="MYVTPNFLKLQERLVQRNDDKTTILIVDDDIDILTVTGKSVEHA
                     GFEVHAFADPLMAL"
     gene            1471..1638
                     /locus_tag="VHF44_02905"
     CDS             1471..1638
                     /locus_tag="VHF44_02905"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124533.1"
                     /translation="MNYNIEKMNESIKDPSQRRNNEKNERADVGRDIKNRTDEAITKS
                     NVDGDPTRSDE"
     gene            1631..1915
                     /locus_tag="VHF44_02910"
     CDS             1631..1915
                     /locus_tag="VHF44_02910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124534.1"
                     /translation="MNSIMESTIKDDNIDHNNNNNIEISNKCPKCISGDLIEHPSFLS
                     VPYTSRSKAAEKSKTAIEDQDADFVFKFFSCKRCGYSEFYMVDDAIRKRI"
     gene            2787..2960
                     /locus_tag="VHF44_02915"
     CDS             2787..2960
                     /locus_tag="VHF44_02915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124535.1"
                     /translation="MVLGAIAAIIIAVIVLIILVAIVGFIIELLAPVFAGIIILIIIV
                     VGGAWLYAKYRSR"
     gene            complement(3159..3383)
                     /locus_tag="VHF44_02920"
     CDS             complement(3159..3383)
                     /locus_tag="VHF44_02920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histone"
                     /protein_id="HEX2124536.1"
                     /translation="MSSGPEFGLAAMYRVMKKSGAERVSDDAADELRKVLEEIAERIA
                     RQAVDLSLHAGRKTIKPEDIRFASKNVIRL"
BASE COUNT         1108 a          668 c          669 g         1200 t
ORIGIN      
        1 aaacgatagt gggtaatttt ttagcaactg gttacttcaa tttcctcttt aaagttcaag
       61 aagaaccgga ttgcacagaa tataacaaca actgatgaat gtcctgtgtg ctagatgcct
      121 taaagctgtc catcgtactc attttttact atgtgtcctg attatagaaa gtaacgtcga
      181 taacgaaaat ggttttatta atatatcctg ttcggtaatc cccagtgata tcagcttgtt
      241 attgacttcc gttagcagag atgtggaagt gataactatt ctttgatcag ggatcgcatt
      301 tttaattttt ttagctaatt caatagcttg atagttatta ttggtaccac tattttgtag
      361 atgcttgtat caatctgaaa atagcgctct ccattaatgg atccctttcg cgctgatcga
      421 tattgaggct atggctgatg aatcaaataa tgtattagaa tgtggcggct ttagtggtga
      481 taatagcatt atatcaagag gcggtctgta attagaccat agccctaact tcaatgagcg
      541 tacctgtatt caaatcgaat ttctttatgt gtttatggcg agttgtcttt agatgatcca
      601 tagtatcgct atgaaatgcg aaggcagttc cgcagttaga acatatccaa atattgttca
      661 aatcctctgg atgcatatgt gtattgttct ctgtatgaca gcagcaaatt cgatttaagc
      721 attgggagat cttcttatgt atataaccac tataaatgat atccttccct attatactca
      781 ctgcaacttt gtcaggaacc tgtaagatga gccattctag tggctgtttc aatattctgt
      841 tatgttcttt ccagatttga tatttgttag accttgttgc cgtctgttag tcttgtaggc
      901 ccttgagtca tcgtgcccaa aaatcctctt attttttcta ccagctgtga agatgtaaat
      961 ggttttctta ttacaccatc aataggagtt gatggaaaaa cagcttcaaa ttctcctttg
     1021 tttacttcaa acattgtcat cattatgact ttcatttccg gtcgcaaatc ctttactctt
     1081 cttacgagct gaaagcccgt caatgcaggc atcctgacat cagataccaa gacttggcag
     1141 tatttgcaat ccttctgaac atgttataat gccataagtg gatctgcaaa agcatgaact
     1201 tcaaaacctg catgttctac gcttttacct gtcactgtca aaatgtctat atcgtcatca
     1261 acaataagta tggtagtctt gtcatcattt ctctgtacta atcgctcttg caactttaga
     1321 aaatttggtg tgacatacaa gtacttaata ttgactattt ctcttgcttc atttgccaaa
     1381 acgaagacaa actgagttta tatttataat atgcttatca taggataagt catatttgtc
     1441 atataggata tggtctatgg ttagacaagg atgaactaca atattgagaa aatgaatgag
     1501 agtataaaag atccatctca aagacgcaat aatgaaaaga atgagcgagc agatgtgggg
     1561 agagacataa aaaaccgcac ggacgaagct attacaaaat ccaatgtaga tggcgatccc
     1621 acgaggtctg atgaatagta taatggaatc tactatcaag gatgataata tcgatcataa
     1681 taataataat aacatcgaga tcagcaacaa gtgtccaaaa tgtatatctg gggacctgat
     1741 agaacatcct tcattcttat ctgtgcccta tacatcgcgc tcaaaggccg ctgaaaaatc
     1801 aaagaccgcc attgaagacc aagatgcaga ttttgtcttt aagttctttt catgtaaaag
     1861 atgtggatat tcagaatttt atatggtcga tgacgctatt agaaagcgga tatgatttgg
     1921 taattaggtc cagcgaaagc gccgtcatta tccattgctg ccaatccatg cttttcgatt
     1981 atctttcatc atttcttaat gcagagtagt agttaattct cttttcatct gatacagttg
     2041 ttaatgtggg tttgaaagag aattctgaga gcgtgaaggg ataatactct aaatttcctc
     2101 attagataac ttatcataca tttgagttat tttattttaa tatgataact gacgatggat
     2161 acttgttgct tagagaaatc aagaacagat gaaccaaatt tggttcatct gttattctca
     2221 cgtgtgaagc aaaataatgt tagtaaattg ccttattata tggaatttaa ctatcatttg
     2281 attgcgtgag tctttttcat ctcctttaaa ttacttctct agagcaaact gacatagcaa
     2341 catgtcgtca tacaacacta atgatgttac gtctaaagaa ggtgaagact atttagaaca
     2401 aaaaaccctg ttgacgggaa gagtcgctat ctgttgtaac acaacccaag ggacagaaag
     2461 accttgacga taaaaattat acttatgtac tatcgaggaa actaccacgt cagtctatta
     2521 ccaagaaatt aaaacaatat catgtaggag ttaccaaggc aatgatgccc agcacgaaga
     2581 atctatgcta gatgagagtc atattttgat tatattatcc aaaactagat cataagaggt
     2641 tacagtaatg attgcatgtt gtatgcttaa tctagtaggc atgagaccgt gtgcgcaaga
     2701 gaaatcaaag cagccatacc cgcgtagatg tatctactag aaatatcaac taaagtatac
     2761 aattatcata cattcctaac gtatgcgtgg ttttaggcgc gatagcagcc attataattg
     2821 cagtaattgt gctgattatc ttagttgcaa tagtcggctt tattattgag ctattggcac
     2881 ctgtgtttgc tggaataata atattgatta ttatagtggt cgggggagca tggttgtacg
     2941 caaaataccg ttcacgttag cacgaaattt tctattatga tatcacctca cgtttagcaa
     3001 ttgaattgat tgataacaat tatgcatatt gattatggcc tctcactcag ccatgcaaat
     3061 atcccacccg caacgctgct cctcttcttc tctactccct ttgtatggcg tacatgactg
     3121 aaacttgcag tgggaatata tgagtagccg gtaggcggct agagccttat cacattcttg
     3181 gatgcaaacc taatgtcctc tggcttgatt gtttttcttc ccgcgtgcaa agataggtct
     3241 actgcctgcc tagcaattct ctctgctatc tcttcgagaa cctttctcaa ttcgtcagct
     3301 gcatcatcac taacacgttc tgcaccagat tttttcatga cgcgatacat tgctgcaagg
     3361 ccaaattcag gtccagaaga catacgcagt acgtgactta actatattaa aagtgtactt
     3421 atacttttaa taattaattc actcccttca gcacgtattg agatattatt atctaataat
     3481 gacaataata attatttcac ctatgttgtt tattatgcat ccttatactt ccgtgcaaga
     3541 aaaggttgtt gtagtatcaa ttcttgccga gcaaaagggt acaaaagggc acgacggtta
     3601 ttttttcata tcccggttgg cctttttttt attgtaataa taatt
//
LOCUS       DATABJ010000181         6340 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1229366, whole genome shotgun sequence.
ACCESSION   DATABJ010000181 DATABJ010000000
VERSION     DATABJ010000181.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6340)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6340)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6340
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1229366"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..331
                     /gene="nadA"
                     /locus_tag="VHF44_02925"
     CDS             <1..331
                     /gene="nadA"
                     /locus_tag="VHF44_02925"
                     /EC_number="2.5.1.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008987 - quinolinate synthetase A
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HEX2124537.1"
                     /translation="SSALYHMATGELIKSGHILSTEGMMNHARKSHASQFVIATETGI
                     LHRMIKENPEKTFIPVKDDAVCKYMKKINLKKVHNSLVNGIYEVKVPSKTAEKARLAI
                     ERMLSIS"
     gene            complement(468..1280)
                     /gene="nadC"
                     /locus_tag="VHF44_02930"
     CDS             complement(468..1280)
                     /gene="nadC"
                     /locus_tag="VHF44_02930"
                     /EC_number="2.4.2.19"
                     /inference="COORDINATES: protein motif:HMM:TIGR00078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004514 - nicotinate-nucleotide
                     diphosphorylase (carboxylating) activity [Evidence IEA];
                     GO_process: GO:0019363 - pyridine nucleotide biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HEX2124538.1"
                     /translation="MHEDIGTGDVTSNCLIPQDLHSRAQIICKNKKSAIVCGLEEMSL
                     VFDLCRCNTKTLVSDGSWVQKGTVVMTIEGKTRSILKAERTALNLLMRMSGIASETRY
                     IKDAIADLSDSVIIASTRKTAPGLRLFDKKAVTIGGGNSHRIRLDDMVLIKDNHLAII
                     GSVTKSVEVAKKNAASSMNIECEAKNSNEVIEAISAGADIVMLDNFSPEDAAKIIKEI
                     SRRGIRERVKLEISGGITMQNIRDYAKAEPDIISVGFLTHSPKAVDFSLEII"
     gene            complement(1342..1530)
                     /gene="spt4"
                     /locus_tag="VHF44_02935"
     CDS             complement(1342..1530)
                     /gene="spt4"
                     /locus_tag="VHF44_02935"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003711 - transcription elongation factor
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor subunit Spt4"
                     /protein_id="HEX2124539.1"
                     /translation="MPKEVACKKCKAITIGKVCPVCKSSDLSPDWSGIILVFDPSKSQ
                     IANTLEITAPHKYALKVS"
     gene            complement(1534..2133)
                     /locus_tag="VHF44_02940"
     CDS             complement(1534..2133)
                     /locus_tag="VHF44_02940"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase"
                     /protein_id="HEX2124540.1"
                     /translation="MFSIVHMSDVVRIPPNRLTNSLKNTAIGILKEKYESMISPDIGY
                     IIMIIDATANSIGKLVAGDGATYHRVNFKALTFFPKLQEVVEGEVVEITDFGAFVRIG
                     PTDALLHLSQITDDYLRSDVKQGVIIANQSAKSLRIGSRIRARVTAVSLGKGAAMGKI
                     GITCRQPFLGATEWIVQEVKKANQPATPAPVKEKKGGGK"
     gene            complement(2216..2776)
                     /locus_tag="VHF44_02945"
     CDS             complement(2216..2776)
                     /locus_tag="VHF44_02945"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124541.1"
                     /translation="MKMPPKLSSNSLSATSTRSFRFDNEYSKILDEEAERMGISVNAL
                     VGIILKRYTEFTRYLSKIDMVVVNREILTSLLDCSNEESLYNLGMKLGETVPIDTIMF
                     WKKDLAEKSVLEYIEKIICRYGHLGTYDEISQSTSRIIVIRHRLGRKGSKFFEGYLRS
                     TLKNTIAKDATFEVTESSMKFEILYT"
     gene            2916..3860
                     /locus_tag="VHF44_02950"
     CDS             2916..3860
                     /locus_tag="VHF44_02950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HEX2124542.1"
                     /translation="MSQNNVNRSLQIEPRTDKGTDVCSLCNSTATVFDAETSEIVCTT
                     CGMVIHDNIESLGPEWRVYSGDDIESKSRTGMPTSLAFHDMGLSTFISYSNIDANGAA
                     ISPEQMSKVQRMRRWNKISSNNRSYHRNLKNAFAIMGTVKDKLSLNDALIEKSAYNYR
                     KALDKRIIKGRSIRALVVASVYAACRELNIPRTLDEIAETANTDSIFAGKCYRLLVRH
                     LKLHLPVIDSNVYLAKIASKARVTEKTYRRALEMLTVIKENPISHGKDPNALAVAVLY
                     AACLKEDEKVSQAQIAVAGDTSIVTLRKRFQDVRKIFS"
     gene            3946..5058
                     /locus_tag="VHF44_02955"
     CDS             3946..5058
                     /locus_tag="VHF44_02955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0140663 - ATP-dependent FeS chaperone
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEX2124543.1"
                     /translation="MVTVDQVLSSLKKVVDPELHKDIVSMGMVKDIIINDGKVAFTLE
                     LTTPACPFNSDIEQDVRNAITNLGVQDLKLKVTARVMEGRAISMDELLPGVKNILAVA
                     SGKGGVGKTTVAVNLALVLSKTGAKVGLLDADIYGPSVPLMLGLKDSPQVIENKIQPP
                     ITSGVKVISMGFFYEQSQQAGIYRGPIVSGIVKQFLTDVNWGDLDYLIIDLPPGTGDA
                     PLTMAQTIPITGILIVTTPQEVAMNVAVKAIGMFNKLNVPIVGVIENMSYLQCPHCNE
                     HIHIFGKGGGQRVSEQFNIPFIGEIPLHPHIMEGSDRGKPIIIAEPESMQSHAFSKVA
                     KMVAGRISVIAAEMNAQEKEDETKSDQIEPQNASHA"
     gene            5042..5572
                     /locus_tag="VHF44_02960"
     CDS             5042..5572
                     /locus_tag="VHF44_02960"
                     /inference="COORDINATES: protein motif:HMM:NF015952.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-dependent dephospho-CoA kinase family
                     protein"
                     /protein_id="HEX2124544.1"
                     /translation="MPLTPECIRILKEPFGNLIPDKNINRRKLNAALRNAKKIISVGD
                     ATTDRLISFGIIPNISVVDGKERRMKRKYANNSSLNDDQIDKNPTKELKCSNEAGTIS
                     KKAVELLKDALEISSPVRIIVDGEEDLLALPLFLMAPDKSVVMYGQPYEGLVVVKINT
                     KIRQKAKDLMDRIGMV"
     gene            complement(6021..6164)
                     /locus_tag="VHF44_02965"
     CDS             complement(6021..6164)
                     /locus_tag="VHF44_02965"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124545.1"
                     /translation="MTFFCKRGRHIDCPGEWPVDGGCGPTHDCSFDIKMAKCLCECHN
                     YKE"
BASE COUNT         2031 a         1192 c         1158 g         1959 t
ORIGIN      
        1 atcgtccgcg ctatatcata tggccactgg cgaattgata aaatctggtc acattttatc
       61 gaccgaaggg atgatgaatc atgccagaaa atcacatgca agtcaatttg taattgctac
      121 cgaaacagga attcttcata gaatgattaa ggagaacccc gaaaaaacat ttattccagt
      181 aaaagatgat gcggtttgta aatatatgaa aaagatcaat ctaaagaagg ttcataattc
      241 tctagtaaat ggtatatatg aagttaaagt gccctctaaa acagcagaaa aagcaagact
      301 agctattgag cgtatgctat caatatcata aaatgtaacc tgtggacaag cattccatta
      361 aaacttggtc tcttcaaacg ctttccttat aaccttcatg ataagcaaat gcgaacctta
      421 atctttagta tatgattata atgaccgttc agagcgtctt aaagctttca tattatttct
      481 aggctgaaat ccactgcctt aggagaatga gtaagaaacc cgactgagat aatatcaggc
      541 tctgcttttg cgtagtccct tatgttctgc atggttattc ctccagagat ctctagcttt
      601 accctttctc gtatacccct tctggaaatt tctttaatta ttttagctgc atcctctgga
      661 gagaagttgt caagcataac aatatctgct ccagcgctta tggcttcaat aacttcattt
      721 gaattcttag cctcacattc tatgttcatt gaagaggctg cgttcttttt tgcaacttct
      781 acagatttcg ttacagagcc tataattgca agatgattat cctttatcaa gaccatatca
      841 tctaagcgta ttctgtggct atttcctcct cctattgtca cagctttttt atcgaacaat
      901 ctcaaacctg gtgctgtttt gcgcgtactg gctattataa cggaatcact taaatccgca
      961 attgcatcct tgatgtatct ggtttcagat gctataccac tcattctcat cagaaggttt
     1021 aaggctgtcc tctctgcctt tagaatagaa cgtgtctttc cttctattgt cattacgacg
     1081 gtcccttttt gaacccatga tccatcggaa accaaagttt ttgtgttgca gcgacacaga
     1141 tcgaaaacca aactcatttc ttcaagaccg cacactattg ctgatttttt atttttacat
     1201 ataatctgag ctcgactatg aagatcctgt ggaataagac aattgctcgt aacgtctcca
     1261 gtaccgatgt cttcatgcaa gaactttact agagcctctc taacattaag aaatgactgt
     1321 aaattcttca ttgtattatt attatgaaac ttttagtgca tacttatgag gagctgtaat
     1381 ctctagagta ttggctatct gtgacttcga ggggtcaaag acaaggatta ttccggacca
     1441 atctggagaa agatcagatg atttacaaac tggacaaacc ttaccaatag ttattgcctt
     1501 gcatttttta caagcaacct ctttaggcaa ttactatttg cctcctcctt tcttttcttt
     1561 cactggtgca ggcgtagcag gctgattggc tttctttacc tcctgcacta tccattcggt
     1621 tgcacccaga aaaggttggc gacaggttat accaattttt cccattgctg ctcctttacc
     1681 tagacttaca gctgtaactc ttgctcttat tctggaacct attctcaaag attttgctga
     1741 ctgattggct ataattacac cttgttttac atcactcctc aaatagtcat ctgttatttg
     1801 tgatagatga agcaatgcat cagtcggtcc aattctaaca aatgctccga agtctgtgat
     1861 ttctactact tctccttcaa caacttcctg caattttgga aagaatgtta atgccttgaa
     1921 atttactcta tgataggtag caccatcgcc agccactagt ttacctatgg aattggcggt
     1981 agcatcaata atcataataa tgtaacctat gtctggactt atcatgctct cgtacttttc
     2041 ttttagtatt ccaatagcag tgttctttaa ggaattagtt aatctgttag gtgggattct
     2101 gacaacatca ctcatatgca ctatagaaaa catactgtat gtaggcagtt aatcgaaaca
     2161 tcaatttatg aaccttttga ttcaagaatg atacgatgaa atgatttaat ctacactatg
     2221 tatataaaat ttcaaatttc atcgaagatt ccgtcacttc aaaagtggca tcctttgcaa
     2281 tagtattttt taaagtagat cgaagatatc cttcgaagaa tttggaacct tttcgtccta
     2341 ggcgatgtcg tattacgata attctgctag ttgattgtga aatttcgtca tatgtaccta
     2401 aatgaccata tctacaaata attttctcta tatattctag gactgacttt tcagccaaat
     2461 ccttcttcca aaacattatt gtatcaattg gaactgtttc gccaagtttc atgcccaggt
     2521 tatagagact ttcctcatta ctacaatcaa gcaatgaagt caagatttca cggtttacca
     2581 ctaccatatc aattttggat aaatatctag taaattcggt atatcttttt aagataattc
     2641 ctactaatgc gtttactgat atacccattc tttctgcctc ctcatctaat attttggaat
     2701 attcattatc aaatctaaaa gaccttgtag aagtagcaga aagactatta gaagatagtt
     2761 tcggaggcat tttcacacaa ttattatttc tctcaattaa atgtattgtg ttaggatgaa
     2821 tttatttgtg ttacaactgg tgactaattt acattaatac catgatagta cacatgtagc
     2881 ttatatttat tctacagatg cttattacta tgaaaatgtc acaaaacaat gtcaatcgtt
     2941 cactacaaat tgaaccccgc acagacaaag gcaccgatgt ttgttcgctg tgcaatagta
     3001 cagcaacggt atttgatgcc gagactagtg agatcgtttg taccacttgt ggcatggtga
     3061 ttcatgataa tatagaatcg ttgggacctg aatggagagt ttactcgggc gatgacattg
     3121 aaagtaaaag taggactgga atgccaacgt cattagcatt ccacgatatg ggtctatcga
     3181 ctttcatctc atattctaat atagacgcta atggcgccgc tattagtcca gaacagatga
     3241 gtaaagtcca aagaatgcgt agatggaata aaatctccag taacaataga agctatcata
     3301 gaaacttaaa gaatgctttt gccattatgg gaacggtaaa agataaatta tcattaaatg
     3361 atgcgctgat agaaaaatca gcatacaact atcgtaaagc tcttgacaaa cgtattatta
     3421 aaggcagatc aattcgagcg ctagttgttg cctccgttta tgcagcatgt cgagagttaa
     3481 acattcctag aacacttgat gaaattgctg aaactgcaaa tacggactct atttttgcag
     3541 gaaaatgcta tcgtctattg gtaagacatt tgaaacttca tcttcctgtt atcgactcta
     3601 acgtttatct tgcaaaaata gcgagcaagg caagagtgac cgaaaaaacg tataggaggg
     3661 cactggaaat gttaaccgtt ataaaggaaa acccaatttc acacggcaaa gatcccaatg
     3721 cacttgcagt tgcagtttta tatgccgcat gcctgaaaga ggacgagaaa gtgagtcagg
     3781 cgcagatagc agtagcagga gatacgagta ttgttactct cagaaaaagg ttccaagatg
     3841 tgaggaaaat tttttcttga aaattttatt ctatccacac atttctaacc aattctgata
     3901 tatctaatga atgatttaaa tacagtaaat acaaattttt taaatatggt tactgtcgat
     3961 caagttctta gttctttaaa gaaggttgta gacccagaac tacataaaga tattgtatct
     4021 atgggcatgg taaaagatat aataataaat gatggcaaag tagcttttac actcgaactc
     4081 actactcctg cttgcccatt taacagcgat atagaacagg atgttagaaa tgctattaca
     4141 aatttaggag ttcaggatct caaattaaag gtaacggcac gggttatgga aggtcgtgct
     4201 atatcaatgg acgagttgtt acccggcgtc aaaaatatat tagcggtggc cagcggaaag
     4261 ggaggagtag gcaagacgac tgttgctgtg aatctagcac ttgtgttatc aaagacagga
     4321 gcaaaggtag gattgttaga cgctgatata tatggcccaa gtgtaccgct gatgctgggc
     4381 ttaaaggact caccacaagt aatcgagaat aaaattcaac cacctataac atcaggtgtc
     4441 aaagtaatat cgatgggttt tttctacgag cagtcacagc aggcaggaat ttatagagga
     4501 cctatcgtat caggaatagt taagcaattt cttacagatg taaattgggg cgacttggac
     4561 tatttaatta tagacttacc accggggact ggtgatgcac cattaacaat ggcacaaaca
     4621 attccaatta caggcatact gattgtaaca actcctcaag aagtcgctat gaatgtcgct
     4681 gtcaaggcaa taggcatgtt caataaatta aatgtaccga ttgttggtgt tattgaaaac
     4741 atgagttatt tgcaatgccc acattgcaat gaacatattc acatattcgg aaagggaggt
     4801 ggacagagag tgagtgagca attcaacata ccatttattg gtgaaatccc tcttcatcca
     4861 catatcatgg agggcagtga tcgcggaaag ccgataataa tagccgaacc tgaatctatg
     4921 caatcacatg cattcagcaa ggttgccaag atggtagccg gacgaataag tgtgatagca
     4981 gcagagatga atgcacaaga aaaagaagac gaaacaaaat ctgatcaaat agaacctcag
     5041 aatgcctctc acgcctgaat gtatccgaat tctaaaagaa ccttttggaa atcttattcc
     5101 tgacaaaaat atcaataggc gcaagcttaa tgcggcatta aggaatgcaa aaaaaataat
     5161 atctgttgga gacgctacga ccgaccgttt aatctcgttt ggtatcatac caaacatttc
     5221 agtcgttgac gggaaagaga gacgtatgaa aagaaagtat gcaaataatt cttccttgaa
     5281 cgacgatcaa atagacaaga atccaaccaa agaattgaag tgttcaaatg aagcaggaac
     5341 catatcaaag aaagctgttg agctattaaa ggatgcattg gaaatctctt ctcctgtaag
     5401 aatcatagtt gacggagaag aagatttgct ggcattaccc cttttcttaa tggccccaga
     5461 taaatcagtt gtcatgtatg gacaacctta cgaaggtttg gttgtagtaa aaattaatac
     5521 taagatccga cagaaggcta aagatttaat ggataggata ggaatggtct aaattcaggg
     5581 tatgaagatg tggtggctgt atgatttctt ataagaaaaa tgatttgtta taccaactat
     5641 ctgaccctgc ctataaattc tgcttgttgt ggcgctattt acataaagcc tttagatgaa
     5701 atgagtctct taagaatcac atttttctgt tgaataaatt aaaagaatcc taagagccaa
     5761 aaaatcggct gggccactaa agaaagtcga aaatcttatt tgtttgccta tgaatcacaa
     5821 ccacatccat cattaagagc atcagtggtt ttaatattgt atattttcat acatttatca
     5881 catatacttc catcattatc gattgcagta ttgcagaatg aacaaattct attgtcgttg
     5941 aatgactcca tggatttatc aacatacaaa taatttttaa ccttttttat gtcagcaatt
     6001 actttgtctc cacttgaaaa ctattcttta tagttatgac attcacagag acattttgcc
     6061 atcttaatat cgaaagagca atcatgggta ggtccacaac cgccatctac aggccattca
     6121 ccaggacaat cgatatgcct tccacgtttg caaaagaatg tcaaattcaa atactatcca
     6181 gtgagagaga aagcaattta ttttttgtgt tctgatatct gtgatattgc attattatag
     6241 gtcaatgttg aacaattgtg gtgcataaat tgatccttcc ctaactctct taacctttgc
     6301 aattgaaagg taatggggcc atatagtcac cataatacat
//
LOCUS       DATABJ010000182         1654 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1231620, whole genome shotgun sequence.
ACCESSION   DATABJ010000182 DATABJ010000000
VERSION     DATABJ010000182.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1654)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1654)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1654
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1231620"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..378)
                     /locus_tag="VHF44_02970"
     CDS             complement(<1..378)
                     /locus_tag="VHF44_02970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0004518 - nuclease activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ERCC4 domain-containing protein"
                     /protein_id="HEX2124546.1"
                     /translation="MSVRIVVDERERNSRVPNLLRQAGAIIDFAHLKVGDYIVSPDTA
                     IERKTIHDLISSIYDGRLFVQCSELAQYYSKPIVIIEGNIIELLKVPIEIDDDKLKIL
                     VERIPLAYDAIAKVTLDFRIPIIH"
     gene            complement(473..865)
                     /locus_tag="VHF44_02975"
     CDS             complement(473..865)
                     /locus_tag="VHF44_02975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prefoldin subunit beta"
                     /protein_id="HEX2124547.1"
                     /translation="MSEQELPPWLREQVSRLQQLQQNLQAIMMQKQQIELEIVETDRA
                     LEELKKIGIDDAVYKSAGPLLIKANKEGTLKELEEKKELSNTRVTVLAKQEARVKDNL
                     KEVENKINQMIRGAQGSDSGSIAGLKPK"
     gene            944..1165
                     /locus_tag="VHF44_02980"
     CDS             944..1165
                     /locus_tag="VHF44_02980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124548.1"
                     /translation="MSLKYELIVARRLGISSLPISINTLEISDEIFIFSLEPDESFVS
                     GLSAEQIDFAIDLRMDIGLFLKEICMLAL"
     gene            complement(1154..1393)
                     /locus_tag="VHF44_02985"
     CDS             complement(1154..1393)
                     /locus_tag="VHF44_02985"
                     /inference="COORDINATES: protein motif:HMM:NF013905.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L37"
                     /protein_id="HEX2124549.1"
                     /translation="MVSRKKQAHTGLKGLGIKFGATVRKRYGMAYNTLKQKRRCPSCG
                     SLQFNRIASGIWYCPKCRYKVAAGAYDIDTEKLQS"
     gene            complement(1386..>1654)
                     /locus_tag="VHF44_02990"
     CDS             complement(1386..>1654)
                     /locus_tag="VHF44_02990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="exosome complex component Rrp42"
                     /protein_id="HEX2124550.1"
                     /translation="QDPPVTTIPVSITAIRIGEAVILDPTSEEEACMNARITITTNSN
                     GDYTAIQKGSTGAFTVGQIKKAAETARIKGEEVRAKLKELTRAG"
BASE COUNT          437 a          325 c          263 g          629 t
ORIGIN      
        1 atgtataatt ggaattctga agtctagcgt tactttagct attgcatcat atgctaaggg
       61 aattctttct actaatattt ttaatttgtc atcatctatt tctataggga ctttgagtaa
      121 ttctatgata tttccttcaa taatcactat aggtttggaa tagtattgag caagttctga
      181 gcactgcaca aataatcttc catcgtagat agagctgatt agatcatgaa tggtttttct
      241 ttctattgca gtgtctggtg agacaatata atcgccaact ttcaaatgcg caaaatctat
      301 tattgcacct gcttgacgta agagattagg aactctacta tttctctccc tttcgtcaac
      361 tacaattcta acagacacat actagtttaa tcagctgtcg ttaatgtatc taactttatt
      421 atttaatcaa aaatgatgtc ttcttccttc tctatatttt acattgttat tatcattttg
      481 gttttaaacc tgctatagaa ccactgtcac tgccttgtgc acctcgaatc atttgattaa
      541 ttttattttc tacttctttt agattatctt ttacccttgc ctcctgtttt gcaagaaccg
      601 ttactctagt gtttgacagc tctttttttt cttcaagttc ttttaaagtg ccctctttat
      661 ttgcctttat taacaaaggg ccagcgcttt tatatactgc atcatctatc cctattttct
      721 tcagttcttc tagtgctcga tcggtttcaa caatttctag ttctatttgc tgtttttgca
      781 tcatgattgc ctgtaaattc tgttgaagtt gttgcaaacg tgatacttgc tccctaagcc
      841 aaggtggaag ttcttgttca ctcataataa ttcaattctt aagatgaaag taaccaccat
      901 aaaatcatac cgctaattta taatacattt gtaagaggta ttaatgagtc ttaaatatga
      961 attgatagtg gcgcgtagac taggaatatc atcactccca atttctataa atacattaga
     1021 aatatccgat gaaattttta ttttctctct tgaaccagac gaaagcttcg tatcgggctt
     1081 aagtgcagaa caaatagatt ttgcaataga tctacgtatg gatattggct tattcttaaa
     1141 agaaatttgc atgctagctt tgtagttttt cagtatcgat gtcatatgct ccagctgcaa
     1201 ctttataacg gcattttggg caataccaga tgcctgatgc aatcctattg aattgcagtg
     1261 aaccacaaga cgggcatcgt ctcttttgct ttaatgtatt atatgccatt ccatatcttt
     1321 tacgtacagt agctccaaat tttataccta aacctttgag cccagtatgg gcctgcttct
     1381 ttctactaac cagctctagt caactccttt agtttggctc gtacttcctc tcctttaatt
     1441 cttgctgtct cagctgcttt ctttatctgt ccaacagtaa aagcacctgt cgatcccttc
     1501 tggatggcag tatagtctcc attggaattt gttgttatgg tgattcttgc attcatacat
     1561 gcttcttctt cagatgtagg atctaaaatt actgcttcac caattcgtat cgcggtgata
     1621 gatacaggta ttgtagtgac tggtgggtct tgac
//
LOCUS       DATABJ010000183         3778 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_118704, whole genome shotgun sequence.
ACCESSION   DATABJ010000183 DATABJ010000000
VERSION     DATABJ010000183.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3778)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3778)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3778
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_118704"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..362
                     /gene="erpA"
                     /locus_tag="VHF44_02995"
     CDS             <1..362
                     /gene="erpA"
                     /locus_tag="VHF44_02995"
                     /inference="COORDINATES: protein motif:HMM:NF010147.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051536 - iron-sulfur cluster binding
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="iron-sulfur cluster insertion protein ErpA"
                     /protein_id="HEX2124551.1"
                     /translation="NIAMETAQQSQIVTITPKAAEKVVEFMKQEGKDNLLLRVYVSGG
                     GCSGLSYGMGFEEKADEDDKVFEQNGVKVLIDSYSQNYLKGANIDYIDSLMGSGFKIN
                     NPNVTKSCSCGHSFTTE"
     gene            complement(469..1746)
                     /locus_tag="VHF44_03000"
     CDS             complement(469..1746)
                     /locus_tag="VHF44_03000"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HEX2124552.1"
                     /translation="MSDSTTTTTHVLINPFDMALKQLAEAAKIIDLDNGMHEILSHPK
                     RVLTVAIPTRMDNGEIKVFTGFRSQHNDARGPFKGGIRYHPQVSIDEVKALSMWMTWK
                     CAIADLPYGGGKGGIICNPKDMSEGELERMTRRYAYGISDIIGPHTDIPAPDVYTGGK
                     EMAWIMDTYSALKGNFVQPELITGKPLAIGGSLGRNEATGRGLSFTIREAAKKLKINM
                     KTATVVVQGFGNAGQFAAQLVEEQGAKIIGASDSQGGVYNKNGIQVGALRRHKEKTGS
                     VVGFSGTKSISNEDLLEQDCTILIPAALESQLTKKNAGKISTKIIAEAANGPTTTEAD
                     ETLYKNKILVIPDILANGGGVTVSYFEWLQNLRREYWSENEVNERLDRNITKAFDDVY
                     NIYEKYDVNMRKASTLLAVNRVVEAIKIRGLWP"
     gene            complement(1894..2241)
                     /locus_tag="VHF44_03005"
     CDS             complement(1894..2241)
                     /locus_tag="VHF44_03005"
                     /inference="COORDINATES: protein motif:HMM:NF014470.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0015031 - protein transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="twin-arginine translocase TatA/TatE family
                     subunit"
                     /protein_id="HEX2124553.1"
                     /translation="MILSSLLMNIGGSEWAIVIILGLILVFGPKKLPQLSRTFGKASG
                     EYEKAKQLFRLEQENIKKHVNQNTYLMGPKILGPVASQRQKLEEIAKSLDIDYTGKTD
                     EELRFQITDKIQR"
     gene            2562..3035
                     /locus_tag="VHF44_03010"
     CDS             2562..3035
                     /locus_tag="VHF44_03010"
                     /inference="COORDINATES: protein motif:HMM:NF025044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEX2124554.1"
                     /translation="MIKSCYLNTISTMAYRSIDSDTIDQLRGYIDRLNEESQNGSVIV
                     VEGKRDVAALISVGFNGNVTVFHHFRGVTDFVDNYHLNRKKIILLLDMDRKGKQITSK
                     LVTVLQYKGNNVTLFYKRALAKITNGKVRHVEDLVTYAPHLSGITGSRKDLYFYI"
     gene            3173..>3778
                     /locus_tag="VHF44_03015"
     CDS             3173..>3778
                     /locus_tag="VHF44_03015"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEX2124555.1"
                     /translation="MKLPSTGIVKYHVKLRFEVDGLVEKADIIGAIFGQTEGLLGPEM
                     NLNELQKVSKVGRIEVNVDTKPNMAKGDALIPMSTDISTAALIAAAIESIDKVGPFQA
                     KFALFGIDDIRAIKKKVIVDRAKKIVQEWATKTISEGEEMLKDVYDATKPGKLTAFGK
                     AQLACGPGVFDSDWIILVEGRADVINLLRAGFDNAIAIEGAR"
BASE COUNT         1192 a          662 c          696 g         1228 t
ORIGIN      
        1 taaatatagc aatggaaaca gcacaacaaa gtcaaattgt aactattacg ccaaaggcag
       61 cagagaaagt tgttgaattt atgaaacaag aaggcaaaga caatctactt cttagagttt
      121 atgtatctgg aggtggctgc tctggtttgt cttatggtat gggttttgaa gaaaaagcag
      181 acgaggacga caaagtattt gaacaaaatg gagtcaaagt attgattgat agctatagcc
      241 aaaattatct aaaaggtgca aatatagact acatcgatag tttgatgggt tctggattta
      301 agataaataa tcctaatgtc accaaaagct gttcttgtgg acattcattt actactgaat
      361 aagtcataaa gaaataataa taatattatt attatattat tattattaga ccatattatc
      421 cttctagtct ttctgtgttg ttttaactta tcgggatgag gataataact atggccataa
      481 tcctctaatt tttattgctt cgacaactct atttacagct aatagtgtgc ttgctttccg
      541 catattgaca tcatatttct catatatatt atagacatcg tcaaatgcct ttgtaatgtt
      601 tctgtcaagt ctttcattca cttcattctc tgaccaatat tctctcctaa gattctgtaa
      661 ccattcaaaa taagaaactg taacacctcc cccattagcg aggatatctg gaattactaa
      721 aattttattt ttgtataaag tctcatcagc ttcagttgta gtaggaccat tggctgcttc
      781 tgcgattatt ttggtactaa tttttccagc gttcttcttg gtgagttgac tttcgagagc
      841 tgctggtatc aatatagtac agtcttgctc tagcaaatct tcattgctga tagatttagt
      901 tccagagaaa cctactacag aacctgtctt ttctttgtgt cttctcagag cgcctacttg
      961 gataccattc ttgttgtaaa ctcctccttg agaatctgat gcacctatga tttttgcacc
     1021 ctgctcttct acaagctgag ctgcaaattg accggcattt ccgaatccct gtacaacgac
     1081 tgtggcagtt ttcatattaa tttttagttt tttggcagcc tctcttatag taaaagataa
     1141 tccgcgacca gttgcctcat tccttccaag agaaccacca attgcaagag gcttacctgt
     1201 aataagttct ggttgaacaa aattgccctt aagtgctgaa taggtatcca tgatccaagc
     1261 catttctttg ccaccagtat aaacatcagg agctggaata tctgtatgag gcccaataat
     1321 atcagagata ccataagcat aacgtcttgt catacgctca agttctcctt cggacatgtc
     1381 ctttggatta cagatgatac cacccttacc acctccatat gggagatctg cgattgcaca
     1441 tttccatgtc atccacatag aaagcgcctt gacttcgtca atactgactt gaggatgata
     1501 tctgatacct cctttaaaag gtccacgagc atcattatgt tgtgatctaa agccagtaaa
     1561 gactttgatc tccccattat ccattctagt cggaattgca acagtcagaa ccctttttgg
     1621 atgggataaa atctcatgca taccattatc tagatctata atcttagcgg cttcggcaag
     1681 ttgttttaaa gccatgtcga atgggtttat tagtacatgg gtggtggtgg tggtggagtc
     1741 agacaataca atggtttgga aaacgggata tatttaagtg ttaaatacca actgatgcaa
     1801 gattttgcaa gtaacagaaa attaagtacg tcaagttatt atgagacatc aactaaacac
     1861 tttttttagt aacttaaaca atttctcaga gtactaacgc tgtattttgt ctgtaatctg
     1921 aaaacgtaac tcctcatcag tcttgcctgt ataatcgata tcaagtgatt tagctatttc
     1981 ctcgagcttt tgtcgttgtg aagcaaccgg tcctaagatt tttggaccca taagatacgt
     2041 attttggtta acgtgctttt taatattttc ctgctctagt ctgaataatt gttttgcttt
     2101 ttcatattct cctgatgctt ttccaaaagt tctggaaagt tggggtaact ttttcggtcc
     2161 aaatactaaa atgagaccta aaattattac aattgcccat tcagatccac cgatattcat
     2221 tagcaggctt gataatatca ttgttcttta atggatccag ctagaattag tattttaagt
     2281 tatcttctat taatatagat ctgttaaaca gctcaaatgc ttttcaaaaa attatacatt
     2341 gtctgatatg tatatacatc tgcaaaataa gcaactaatt taggtcagaa gatcaattag
     2401 ataagatata ctattctagg aagcatgtat taatgcaaga tagcatgtta gaatgactcc
     2461 tatagaaata ctatactatt gtactaattt attatgctga gtcttaatat catcttcact
     2521 atcaaatgta atgcaatatc actacaaaac aagtaacaat aatgattaaa tcttgttatc
     2581 ttaatactat ttcaaccatg gcttatcgtt caatagacag cgacacaatt gatcagctac
     2641 gtggatatat tgataggctt aacgaggaat cccagaatgg ttctgtcata gttgtggaag
     2701 gaaaaagaga tgtagcagct cttattagtg taggatttaa tggtaatgta acggtattcc
     2761 atcattttag aggtgttaca gatttcgttg ataattatca tctaaatcga aagaaaataa
     2821 ttcttctctt ggatatggac agaaaaggca aacaaataac tagtaagtta gtgaccgtac
     2881 ttcaatataa aggaaataac gtcactttat tctataaaag agccttagca aaaattacta
     2941 atggaaaggt caggcacgta gaagaccttg taacttatgc accccattta tctgggatta
     3001 ctggctcacg aaaagacctt tatttttaca tatgaatatg ttgagttaaa gtcttcgtta
     3061 ttatgggtta gaaaataatt attattttgt tcaactaaaa tcagacaatg cgtcaaagca
     3121 cttatattca agccagacta ctttaatttt acttaatagt aaatatgagg ttatgaaatt
     3181 gcctagcaca ggtattgtga agtatcacgt taaattaaga ttcgaagttg atggtttggt
     3241 tgaaaaggcc gatatcatcg gtgcgatttt tggacagaca gagggtcttt tgggacctga
     3301 aatgaattta aatgaattgc agaaagtttc taaagttggc agaatagaag tcaatgtaga
     3361 tacaaaaccg aatatggcaa aaggggatgc tttaattcct atgagcacag atatttcaac
     3421 tgcggcattg attgctgcag caattgaaag tatcgacaaa gttgggccgt ttcaagccaa
     3481 gtttgccttg tttggtatcg atgacattcg agcaataaag aaaaaggtca ttgttgaccg
     3541 tgccaaaaag attgtgcaag aatgggctac aaagacaatc agtgaaggag aggaaatgct
     3601 caaagatgtt tatgacgcta caaaaccagg taagcttact gcgtttggta aagctcagct
     3661 cgcttgtggc ccgggagtat tcgattctga ttggataata ctagttgaag gcagagccga
     3721 cgttatcaac cttctacgcg ccggctttga caatgcaata gctattgaag gcgcaaga
//
LOCUS       DATABJ010000184         3159 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_793789, whole genome shotgun sequence.
ACCESSION   DATABJ010000184 DATABJ010000000
VERSION     DATABJ010000184.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3159)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3159)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3159
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_793789"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(26..685)
                     /locus_tag="VHF44_03020"
     CDS             complement(26..685)
                     /locus_tag="VHF44_03020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proteasome subunit beta"
                     /protein_id="HEX2124556.1"
                     /translation="MQPQDSRYPDYIAEQIKKGTTTCALTCTDGVVLAADTRASAGFF
                     IADRHVMKIQKVDRHLGMTIAGGVADAQNLVDVMRYNANIYRISNREIMPVNSAARLC
                     SNVLFNQRYFPYYVQIILAGYDNKSGGQIYNIDLFGSMTSEKYISTGSGSPVAYGYLE
                     SEYKEGSSVNEAYKIAIQAVAAAIRRNAGTGDNINAVIIDKDGYRELSKEVKEAVGAV
                     Y"
     gene            784..2208
                     /gene="leuC"
                     /locus_tag="VHF44_03025"
     CDS             784..2208
                     /gene="leuC"
                     /locus_tag="VHF44_03025"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEX2124557.1"
                     /translation="MPKTLFEKIWDSHVIPTKKENNEGPFLIYVDRHLVHEVTSPQAF
                     DGLRLNNRKVRRPDLTFATMDHNVPTSDRSFPLIDQISSVQIQTLVQNCKEFGITLFD
                     IKNPNQGIVHIIGPELGITIPGTVIVCGDSHTSTHGAFGTFAFGIGTSEVEHVLATQC
                     VWLDKPKTFAINFTGRRKNPHAITAKDMILSLIRKIGTSGSVGTVIEYKGETIAELSM
                     EQRMTICNMSIEAGARAGLIAPDQITFDYIRGRTYAPKDEQFEKMVDFWRRNLKTDYN
                     APFDKSITVDINDLAPQVSWGTNPSMVIDVTSSIPYPEEFAKGNEHERKSALRALRYM
                     DLEPGTPITNIPIDRVFIGSCTNSRLEDLLEASVVIKGRKVSPKVRAMVVPGSQQVKM
                     QAERIGLDKIFKDAGFEWRESGCSMCLGMNPDILASGERCASTSNRNFEGRQGSGGRT
                     HLVSPVMAAAAAIQGHFVDVREWL"
     gene            2275..2871
                     /gene="leuD"
                     /locus_tag="VHF44_03030"
     CDS             2275..2871
                     /gene="leuD"
                     /locus_tag="VHF44_03030"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009316 - 3-isopropylmalate dehydratase
                     complex [Evidence IEA];
                     GO_function: GO:0003861 - 3-isopropylmalate dehydratase
                     activity [Evidence IEA];
                     GO_process: GO:0009098 - leucine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEX2124558.1"
                     /translation="MEPFRIIKSKATPLDMVNVDTDQIVPKQFLKLVQKSGYGRYLFY
                     DWRFDKDGRPKSNFVLNDPKYAGRQILLTRDNFGSGSSREHAAWAILDYGFKAVIAPS
                     FADIFYSNCLKNGILPVRLSHEEVDFMFINADDMDIEIDLSNQQITMGPKSMNFEIDE
                     SRKNTLLEGLDEIGITLQFDSQITEYERRNCEFISPYY"
BASE COUNT         1020 a          553 c          618 g          968 t
ORIGIN      
        1 aagaaataat atttctttag atctgctagt agactgcacc aacagcttct tttacttctt
       61 tcgataactc gcgatatcca tccttatcta taataactgc attgatgtta tcgccagtac
      121 ctgcatttcg cctaatcgca gcagcaactg cctgtattgc tattttataa gcctcattta
      181 cacttgatcc ttctttgtat tcggattcaa gataaccata ggctacagga gagccactgc
      241 cggtagagat gtacttttca cttgtcattg aaccaaagag atcaatgtta tagatctgtc
      301 caccactctt attgtcatat ccagctagaa taatctggac atagtatgga aaataccttt
      361 gattgaataa tacattagaa cagagtcttg ctgctgagtt tacaggcatt atttctctat
      421 ttgaaatcct atagatgttc gcattgtaac gcataacgtc aacaaggttc tgggcgtctg
      481 ccacaccacc agcaattgtc atacctaaat gtctatcgac tttctgaatt ttcattacat
      541 gtctatcggc aataaagaaa cctgcactag ctcttgtatc tgcagctagg actacaccat
      601 ctgtgcatgt caatgcgcaa gttgtagttc cttttttgat ctgctcagcg atatagtcag
      661 ggtatctgct atcttgaggt tgcattatat aagatagcag aatcaagacc aaatttaagc
      721 attatcaata tcattaatag ttctgcatat gattatattt ccgatataac ttagtcgaat
      781 cgaatgccaa agacgctatt cgagaagatt tgggacagtc atgtaatacc tactaaaaaa
      841 gaaaacaatg aggggccatt tctaatatat gtagatcgcc atttagtaca tgaggttact
      901 tccccacaag cgtttgatgg ccttcgttta aataatagaa aagtgagacg ccctgatcta
      961 acgtttgcaa ccatggacca taacgtgcca acaagcgata gatcatttcc gttaattgat
     1021 caaatttctt ctgtacagat tcagacatta gtgcaaaatt gcaaggaatt tgggattaca
     1081 ctttttgata ttaagaatcc aaaccaaggc atagttcaca ttatcggtcc tgagcttggc
     1141 atcactattc ctggaacggt gattgtttgt ggtgatagcc atacctcaac gcatggtgca
     1201 ttcggtacat tcgcatttgg cataggtact agtgaagtag aacatgtttt ggctacccag
     1261 tgcgtatggc tagacaaacc aaaaacattt gcaattaatt ttacaggtcg ccgtaaaaat
     1321 ccacatgcta ttactgctaa agatatgata ctttccctta ttcgaaagat aggaacgtca
     1381 gggagtgtag gcactgttat agaatacaaa ggcgaaacaa ttgccgaact ttctatggaa
     1441 cagagaatga cgatatgcaa tatgtccatt gaagctggag ctagggcagg attgatagct
     1501 cctgatcaaa ttactttcga ttatatcaga ggaagaacat atgctcccaa ggatgaacag
     1561 tttgaaaaga tggttgattt ttggcgaagg aatttgaaaa ccgactataa tgcaccattt
     1621 gataaatcta tcactgtaga tatcaatgat cttgctccac aagtcagttg gggaactaat
     1681 ccttcaatgg tcattgatgt caccagttct attccgtacc ctgaagaatt cgcaaagggc
     1741 aatgaacatg agagaaaatc tgcattacgt gctttacgat atatggatct tgaacctggc
     1801 actcctatta caaatattcc tatagatcgt gtgttcattg gctcatgtac taactctcga
     1861 ctagaagatc tgctggaagc atcagttgtg ataaaaggaa gaaaggtgtc gcccaaagtt
     1921 agggcaatgg tagttcctgg ttcccaacag gtaaaaatgc aagcagaaag gataggttta
     1981 gacaaaattt ttaaagatgc tggctttgaa tggcgagaat ctggttgtag tatgtgcctt
     2041 ggaatgaatc ctgatattct tgcatccggc gaacgctgtg caagtacttc taaccgcaac
     2101 tttgaaggaa ggcagggaag tggtggaagg acgcatctcg taagcccagt tatggcagca
     2161 gcagctgcaa ttcaaggaca ctttgtagat gtaagagagt ggttataatg agaataaaac
     2221 tctataatat aaaaaagaga taagaaagaa taaaagaatg gagtaaatta aataatggaa
     2281 ccttttagaa ttatcaaaag caaagcaact ccgcttgaca tggttaatgt cgatacagat
     2341 caaatagttc caaaacaatt tcttaaacta gttcagaaaa gtggttatgg tcgatatcta
     2401 ttttatgatt ggcgatttga taaagatgga agaccgaaaa gtaattttgt gttaaatgat
     2461 ccaaaatatg ctggcaggca gatattgctt acacgtgata attttggtag tggaagctca
     2521 agagagcacg cagcttgggc aattctcgat tatggattta aagcagtaat tgcaccatct
     2581 tttgctgata ttttctatag taactgcttg aaaaatggaa ttttgccagt taggcttagc
     2641 catgaagaag tagattttat gttcataaat gctgacgata tggatattga gatcgactta
     2701 tcaaaccaac agataactat gggtcccaaa agcatgaact ttgagataga tgaatccaga
     2761 aaaaatacac ttcttgaagg tctagatgaa ataggaatta cattacagtt tgactctcaa
     2821 ataactgaat atgaaaggag aaattgtgaa tttatatcac catattatta acttattttg
     2881 tatggtaaag agtcaaaatt ctcgtttata ctgacaaaaa ccagaaggaa taattttaca
     2941 agagactttt ctatttggtg acacaatttt agtgatatta taaaaattct ggatgggggg
     3001 ctattcttat tcctttttaa tatgaatttt gacaaattta tagagttatt tcaggagata
     3061 ttaatgaaga ctagagtatg taactaattg tactttctat atgcttcttt atgcctcttc
     3121 atttcaatac gccattgtaa ttttcggact ctcattttc
//
LOCUS       DATABJ010000185         3147 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_365428, whole genome shotgun sequence.
ACCESSION   DATABJ010000185 DATABJ010000000
VERSION     DATABJ010000185.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3147)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3147)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3147
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_365428"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..739
                     /locus_tag="VHF44_03035"
     CDS             <1..739
                     /locus_tag="VHF44_03035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006810 - transport [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEX2124559.1"
                     /translation="VGLGAGTLCSIIGIGGGIIITPILALMGFSPTHIASTSLMAVAS
                     SSTSSTIAYSRQARIDYGIGLKMAIFSIPGSIVGVFISNAISLEYFKISFAILLMLTG
                     IYILFKNCVLKKKSNNQLKSAFSLLLCYAGSFIAGIISSLFGVGGGIIFVPIMVLIFR
                     MTMTKAAPTSQLILLITSLIGIFTHILLAKPDFFNGLSLAAGAFIGGQIGAALSSHIG
                     ERILQKLLSVFLIAVAIKLIFDSIFNL"
     gene            1180..1470
                     /locus_tag="VHF44_03040"
     CDS             1180..1470
                     /locus_tag="VHF44_03040"
                     /inference="COORDINATES: protein motif:HMM:NF015632.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0147 family protein"
                     /protein_id="HEX2124560.1"
                     /translation="MTSAKKEIKQKENRERLVNAISTLESITKNNNVQRNIRNMVREV
                     LVTLKDEKGGSISVRAANAISILDSVTQSPQMQSHIRTMLWQVVSTLESIRE"
     gene            complement(1685..>3147)
                     /locus_tag="VHF44_03045"
     CDS             complement(1685..>3147)
                     /locus_tag="VHF44_03045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="beta-CASP ribonuclease aCPSF1"
                     /protein_id="HEX2124561.1"
                     /translation="NASLNRHSKNQQSVVTDTYLKSQPWLTNKEEVILCCLGGVKQVG
                     RSCFIVMTRESKIMLDCGINPGEALGLNAYPRLDWFNFDLDELDAVIISHAHIDHQGF
                     LPTLFKFGYKGPIYCTEPTLPLMNLLQMDSVKISKSNGTYLPYELRDVNEVIKHCITL
                     PYGKPTDISPDVTISLNNAGHIMGSATVHLNISGAHNILYSGDYKYARTQLLDSALSI
                     YPRVETLITESTYGNTTDIMPDQTVVYRNFTDTINKTLMEGGKVLIPVPAVGRAQEIM
                     LVLDKEMREGRLIECPIYIEGMISEASAIHMSYAHYLGYDVRKSVSQGINPFQSEYFT
                     VINGHGKRDEVFNDENAAIIMATSGMLEGGPSVEYFKEIAPSPNNKILFVSYQINGTL
                     GRRVLDGAMNEVSMLDKNGKVKVVPVRCQTQKMDGFSGHSDFNQIMSFVAKIRPKRVL
                     VNHGERSKSDNVASAIYSRLKIRSGVPDNREMLRLR"
BASE COUNT          976 a          583 c          530 g         1058 t
ORIGIN      
        1 agtaggacta ggagcaggta cactctgttc tattattggc attggcggtg gtataataat
       61 tacgcctatt cttgctttaa tgggattttc accaactcat attgctagta caagtctaat
      121 ggcagtagct tcaagcagta catcatctac tattgcatat tctagacaag caagaatcga
      181 ttacggcata ggattaaaga tggcaatatt ttctattcca ggctccattg ttggagtatt
      241 catttccaat gctatatctt tagaatattt taaaatatcc tttgctattc ttttgatgct
      301 tacaggaatc tatatcttat tcaaaaattg tgtcttaaag aaaaaatcta ataatcaatt
      361 aaaatctgcc ttttcgcttt tgctgtgcta tgcaggatct tttatcgctg gtattatttc
      421 gagcttattt ggagttggag gtggtataat ttttgttcct atcatggtct taatatttcg
      481 aatgacaatg acaaaggcag cgcccacttc tcagttaatc ctgcttatta cctcgcttat
      541 aggcattttt acacatatac ttttagcaaa acctgacttt ttcaatggac tttctcttgc
      601 cgcaggcgca tttattggag gtcagatcgg tgccgctctt tcaagtcata taggagaaag
      661 aatactgcag aaattactgt cagtattttt aatagcagtt gccattaaac tgatatttga
      721 ttcaatattt aatttataag aaacatattt aaatgctcta attgatttta tctagtccaa
      781 tgatttagct caagttgatc ttctatttta gagggtccta tctcttaaag tctgtatagt
      841 ctgactgcat ttttcattga cggaaaatct atataatgcc tatccatttt ttcctgtgca
      901 ttaacaaata aactggaaac ctatttttaa gttaattttt taataagtaa tagagaaatg
      961 ctatttactt gttgctaatt gagaataccg atgtgataac attctatcat ataaagatgt
     1021 aaatgaatgc tcactaaata gaacgcaatc agagctacga tatagagtcg tagtaattta
     1081 acttttaatc tataatatat ttacaagctt taagataaaa acattcaaaa gtcactggtt
     1141 attaatctaa ctcattcatt aattaaatag gtgttagtta tgacttcagc aaagaaggaa
     1201 ataaagcaaa aggaaaaccg ggagcgcctt gttaatgcca tatcaactct tgaatcgatt
     1261 actaagaata ataatgttca aagaaacatt agaaatatgg tgagagaagt gctagtaaca
     1321 ttaaaagatg aaaaaggcgg cagcatatca gtacgtgccg caaatgctat aagcatttta
     1381 gacagcgtaa ctcagagtcc tcaaatgcaa tcacacatac gtactatgtt atggcaagtc
     1441 gtctcgactc ttgaaagtat aagagaataa gtttctctac cttatatccg tatttttcaa
     1501 tggttttaag ggagggggaa gtttttcaag tttatgatta ggattagcca gatagtgtct
     1561 cgacgcgcct tctccactta gtactatatt gcaattaata catctatatc ttattgccaa
     1621 attcttcgtc cctaatcata tgtttataca tggctaaaaa gtctatggaa acaattgtta
     1681 aagattaccg taatctgagc atttctcgat tatctgggac tcctgacctt attttcaatc
     1741 tagaatagat tgcgcttgca acattatctg attttgacct ttcaccatga tttacaagaa
     1801 ctcgttttgg tcttatctta gcaacaaagc tcattatctg attgaaatcg ctatgtccgc
     1861 taaaaccatc cattttttga gtttgacatc ggacaggtac aacttttact ttcccatttt
     1921 tgtctaacat actaacttca ttcatcgctc catcaagtac acgacggcca agcgtgccat
     1981 taatttgata agatacgaat aggatcttgt tgtttggaga aggcgcaatc tccttaaaat
     2041 attcaacaga aggaccgccc tctaacatac cagatgttgc cattattatt gctgcatttt
     2101 catcattaaa tacctcatct cgcttaccat gaccattaat tacagtaaag tattctgatt
     2161 gaaatggatt gattccttga gagactgatt tacgaacatc atagccaaga tagtgagcat
     2221 aagacatatg tatagcgctt gcttcggaga tcataccctc aatatatatt gggcattcta
     2281 taagacgtcc ttcacgcatt tccttgtcta agacgagcat aatttcctgt gccctgccga
     2341 ctgcgggaac aggaatcaac acttttcctc cttccataag tgttttatta atagtatcag
     2401 taaaatttct gtaaacaact gtttgatctg gcattatgtc agtagtatta ccatatgtgc
     2461 tctcggtaat gagtgtctca actcgcggat atatcgataa tgcactgtcg agaagctgcg
     2521 ttctcgcata cttataatca ccagagtaca gaatattgtg ggcaccagat atgttaagat
     2581 gaacagttgc acttcccata atatggcctg cattgtttaa cgatattgtg acatctggag
     2641 aaatgtcagt aggtttacca tatggcaatg taatacaatg cttgataact tcgtttacat
     2701 ctcttaattc gtacggtagg tatgttccat tgctcttgga tatctttaca gaatccattt
     2761 gaagcaaatt catcaaaggc aaagttggtt cggtacaata aataggtccc ttatatccaa
     2821 atttaaataa tgtaggcaag aaaccctgat ggtcaatatg tgcatggcta ataattacag
     2881 catcaagctc atctaaatca aaattaaacc aatccagtct aggatacgca tttaacccta
     2941 acgcctcccc aggattgatt ccacagtcca acattatctt actttcacgc gtcatgacga
     3001 tgaaacaaga tcttcctacc tgtttaacac cgccaagaca acataatatg acttcttcct
     3061 tatttgtaag ccaaggttgt gactttaaat aagtgtctgt aacaacgctt tgttgatttt
     3121 tgctgtgtct attaagagat gcgttat
//
LOCUS       DATABJ010000186         3138 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1017882, whole genome shotgun sequence.
ACCESSION   DATABJ010000186 DATABJ010000000
VERSION     DATABJ010000186.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3138)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3138)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3138
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1017882"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..954)
                     /locus_tag="VHF44_03050"
     CDS             complement(<1..954)
                     /locus_tag="VHF44_03050"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2124562.1"
                     /translation="MVSTEYPPMPGGVGRYTANLTIELRKAGLDVYVVCDEKGDGQYS
                     GLSPKNPHNSDVLLKIVNELKPDVVHVQFEPGLYGLILDPLDPKKSGTYIDPFYTKCK
                     IPIVTTFHTGYSLGQWISQASLIKKSGRIGKLGIPARALVRFWKYFLNYQAFNNLNKE
                     KLRMSTAGIVFSHYMSERLDASTNDDGSNSRCHVIYHGSEPAICPPLNKKEARKKFSL
                     PQEDGHRIALAHGFRTAGKGWDILKKMNIPKGWTLVVNSSKDYYNKENLELNWQGATN
                     ILDLRRGYLREDELSTLFYASDAVILPYKVTAGSGVMFDALA"
     gene            complement(1017..1508)
                     /locus_tag="VHF44_03055"
     CDS             complement(1017..1508)
                     /locus_tag="VHF44_03055"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124563.1"
                     /translation="MSLKHYGGILQWTGRRFWESRQFYSAYIALFVAITNWITIQYRL
                     LLENVPVLNVIFSNIWVFMIAATIVFTIVSILGGHYIHRKRQFRLEQALSIEENPYLY
                     KAAPGKERDLMIPMGILQLDALEELLRSNNALTEEKKKQFETYRQGLLRLMEGHPFGQ
                     MWS"
     gene            1925..2983
                     /locus_tag="VHF44_03060"
     CDS             1925..2983
                     /locus_tag="VHF44_03060"
                     /inference="COORDINATES: protein motif:HMM:NF024831.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2124564.1"
                     /translation="MKALDEMGCKVFLCASAYPKKEETIKRIGIDIEDSIDGFVKAIG
                     RNEILPFLGAYQRMVYTYSFFKKLIKEHKLDFVFVTGGSTLIPKSMADKTIVYVHYPV
                     DLEVTHQRYLNNKMKKIYIKPWLFISNNVDYIKRSTIITNSNYTKDAIKAAWGIDATV
                     IFPPCPQYSFPFADQVKKNIVCSLGRFTPEKNYETILQIAQRQSNTQFELIGSITPDK
                     LSYLEKLRNNAPRNVIFHVNASIEEKIEVLKRSKVMLHSFVGEHFGIALIEAMSAGLI
                     PVTHDSGAAKADGLVPRKYRYNDIDEAVASITDAFSSWNIDEAQRLREYAMRFSAESF
                     RANIKSFISNWIKSNYLP"
BASE COUNT         1020 a          568 c          510 g         1040 t
ORIGIN      
        1 ggctaaagca tcaaacatta cacctgaacc agcagttact ttatatggta atatgacagc
       61 atcagaagca tagaataatg tagatagttc atcctctcta aggtagccac gtcttaaatc
      121 caggatattg gtcgctcctt gccagttcaa ttcaaggttc tctttattgt aataatcttt
      181 agaggaattt accactaatg tccatccctt tggaatattc attttcttta gtatatccca
      241 acctttacca gccgttctaa atccatgtgc taaagctatt cgatgtccat cttcttgcgg
      301 tagagaaaat tttttccgtg cttctttctt atttaaggga ggacatatgg ctggttcaga
      361 cccatgataa attacatggc atctactatt actaccatca tcattagtac tagcatcaag
      421 tctctctgac atgtaatgtg agaagactat gcctgctgta ctcatcctta gtttttcttt
      481 atttaagtta ttgaaagcct gataatttag aaaatacttc cagaatctca ccaatgcccg
      541 cgcaggtatc cctaattttc ctattctgcc acttttttta attaatgatg cctggcttat
      601 ccattggcct aaagaatatc cagtatgaaa tgtcgtgact atagggattt tgcatttggt
      661 gtaaaacgga tcaatgtatg tcccactttt ttttggatct aatggatcca atattaatcc
      721 atataaacca ggttcaaatt gaacatgtac aacatcaggc tttaattcat taactatttt
      781 taacagcaca tctgaattat gaggattttt aggagaaagg ccagaatatt gtccatcacc
      841 tttttcatca catacaacat agacgtccaa tccagctttt ctaagctcaa ttgtaaggtt
      901 tgcggtgtat cgtcctacgc cacctggcat aggtggatat tctgtagaga ccatcagcaa
      961 tttcatcgct gtttaaatca acctactttt tttatgtaaa gatactgtaa ttttctttag
     1021 ctccacattt gcccaaatgg atgaccttcc attagcctta acagaccttg tctatatgtc
     1081 tcaaattgct tttttttctc ttctgttaat gcattatttg aacgtaacaa ttcttctaat
     1141 gcatctaatt gcaatatccc cattggtatc atcaagtccc tttcttttcc tggtgctgct
     1201 ttgtaaagat aaggattttc ttctatagac aatgcctgtt ctaacctgaa ttgtcttttt
     1261 ctatgtatat aatgaccacc aagtatgcta acaatggtaa aaacaattgt agcagcaatc
     1321 ataaaaaccc aaatattcga gaatatgaca tttagaacag ggacattttc taatagtagt
     1381 ctatactgaa ttgtaatcca atttgttata gctacaaata atgctatata cgctgaataa
     1441 aactgcctgg attcccaaaa tctacgtcct gtccattgca atattccacc atagtgctta
     1501 agagacataa tttcaagtta attcaatcct cttttgatta tatagttttg gaaaagattg
     1561 tgtttattag aatacagcaa ctttaaaata aaatgattgg catttttcgg taatatgaga
     1621 ataaaaactt tcttagcttt ggctcttctt tatttgattt cctcttccat atggcttata
     1681 cgattttttt attttagaat acacagaaaa ggaattacta tgagaagaaa attttcaaga
     1741 ttttagataa ttctatttat tgtatatata taataagcta tctaagcaat agatcatgag
     1801 acataagaag acccattttt taaatagtgc atttattaga gctggagtcg tgcactataa
     1861 catggaagcc tacggagaga atcggtagat tcccggatgt ggcgagcatg ttggcctaca
     1921 ttctatcaaa gcacttgatg aaatgggatg taaggttttt ctttgtgcaa gtgcatatcc
     1981 aaaaaaggaa gaaactatca agaggatagg aattgatatc gaagactcga tagatggatt
     2041 tgtaaaggct attggccgta atgagatact tccatttctt ggggcctatc agaggatggt
     2101 gtacacttac tctttcttca agaaactaat caaagaacat aaacttgatt ttgtttttgt
     2161 aactggagga tcaactctta ttccaaagtc tatggcagat aaaaccattg tctacgttca
     2221 ctatcctgtt gatctagaag ttacgcatca gcgttatcta aataataaaa tgaaaaagat
     2281 ttacattaaa ccttggctat ttatttcaaa taatgttgat tatattaaaa gatctaccat
     2341 aattacaaat agcaattaca ccaaagatgc aataaaagct gcatggggaa tcgatgctac
     2401 agtaatattt ccaccatgcc cacaatattc ttttccattt gcagatcaag taaaaaaaaa
     2461 tattgtctgc tctttaggaa ggttcacacc agagaaaaac tatgagacta tacttcaaat
     2521 tgcacaaaga caatctaata cacagtttga acttattgga agcattactc cagataaact
     2581 ttcatatctt gaaaaactaa ggaataatgc accaagaaat gtcatattcc atgtaaatgc
     2641 gagcatagaa gagaaaatag aagttttaaa gagatcgaag gttatgttgc atagctttgt
     2701 aggagagcat tttggaattg cgcttattga agccatgagc gccggactga ttccagtgac
     2761 acatgattca ggtgctgcga aagctgacgg ccttgtgcct aggaaatata gatacaatga
     2821 catcgatgaa gctgttgcat caattactga cgcattttct tcatggaata tagatgaagc
     2881 tcagagatta cgagaatatg ccatgaggtt ttcagcagaa tcctttagag caaatataaa
     2941 gtcattcata tccaattgga ttaaatcaaa ttacctaccc tagagaatat tggagccaaa
     3001 ttcgccaagg ataacgtaat acatttcaca tttaactcac tatatagagc ggatatcatc
     3061 cttatacaat ttgtaattac ataggaacca taaaatagtt aacatatctc ttcattatta
     3121 tcaacaacat tatttttt
//
LOCUS       DATABJ010000187         4776 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1422713, whole genome shotgun sequence.
ACCESSION   DATABJ010000187 DATABJ010000000
VERSION     DATABJ010000187.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4776)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4776)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4776
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1422713"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..531)
                     /locus_tag="VHF44_03065"
     CDS             complement(<1..531)
                     /locus_tag="VHF44_03065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SAM-dependent methyltransferase"
                     /protein_id="HEX2124565.1"
                     /translation="MTAKPKYRGNKTLLAMLWLIGIGVNGYKGVSLHTLEILKKCDII
                     YFERFTSPLYEDDLFNLNSLIGGGGYDNKRKMIPAERWFVEDGNQILEQAKNENVALI
                     TYGDPLIATTLSELEVRARKNLINVDVVHSASAITSLIGESGLHMYKFGRSVTMMSGS
                     NSSISVYNVVFDNLLSG"
     gene            complement(509..1645)
                     /locus_tag="VHF44_03070"
     CDS             complement(509..1645)
                     /locus_tag="VHF44_03070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEX2124566.1"
                     /translation="MVSSNYAVEFLRKALEQYTPSRSEASLANLIKDKCVNELGFEQV
                     HIDNVGNIIAVKGNGEPKILLCGHMDTVPGQIPVRIEDGFLYGRGASDAKAPLISMLL
                     AAAEFPKQTGTIIFAGVVDEEGNATGIKQLVKGKLSVDYAIFGEPSGIENITIAYKGR
                     LAIRLTCDVGNSAHASAPWLAKNSIEEIYDFWNAIKSEIEILHVKETRANSISCSITE
                     ITGGSSHNVTPQTCRITIDIRIPTNTTCGKVLKLIDGVVNKVAINKGIKAVYRIEDNT
                     EPFEADLNSPLVRALSLSIQDIKKKRPILLRKTGTGDMNILGNALNIPVVTYGPGDPH
                     ASHTANERVQIEEYVSSIDVFVRALFHMSRFHHNKKLNDSKAKI"
     gene            complement(1659..2528)
                     /gene="lysX"
                     /locus_tag="VHF44_03075"
     CDS             complement(1659..2528)
                     /gene="lysX"
                     /locus_tag="VHF44_03075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine biosynthesis protein LysX"
                     /protein_id="HEX2124567.1"
                     /translation="MTKGTSISSLTILYDNIRWEEKALYEAAKKKGVEINNVDCKTLS
                     IDLNDKNSKYVDKIIIQRTVSYFKSLHSTAALEGLGAHIINSLRTAILCGNKLFAHME
                     LQKAGIKTPNAFTAFSADSAISALDSIGYPAVIKPTIGSWGRLIALLRDTEAAKAIIE
                     DREHMFPLYHVYFFEEFVKRPPRDIRAIVVGDAVIAAIYRYSSQGEWKTNMALGGYAK
                     TCPITNELEDICIKATNAVGGNIVGVDLMESEETGLMVHEVNNTTEFKNTVRVTGIDV
                     PGLMIDYALQLSN"
     gene            complement(2525..2692)
                     /gene="lysW/argW"
                     /locus_tag="VHF44_03080"
     CDS             complement(2525..2692)
                     /gene="lysW/argW"
                     /locus_tag="VHF44_03080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006526 - arginine biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0019878 - lysine biosynthetic process via
                     aminoadipic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-aminoadipate/glutamate carrier protein
                     LysW/ArgW"
                     /protein_id="HEX2124568.1"
                     /translation="MIKCPECDAEIKIPADSIEGEIVTCPDCGASYELLKVDEGFNIK
                     PAQVVGEDWGQ"
     gene            complement(2701..3912)
                     /locus_tag="VHF44_03085"
     CDS             complement(2701..3912)
                     /locus_tag="VHF44_03085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEX2124569.1"
                     /translation="MSLKSDDPNYFAHFYNQSNNNRKRIRILDSTLREGEQHPGVAFT
                     IKQRIQIAWMLDSFGVDQIEISPIVSSDHYQATKTIIKQGLRADILAHVRAIKSDVDV
                     AIDSGATWIATYMGISDIHLSAKLKINREAAKIRALEVADYIKSHGLKARFTMEDASR
                     TDPSFLIDMCEEMNKRGIERISIPDTVGIMSPRGMYNLVKMVYDNIDISKSSLDVHCH
                     NDVGLALANALAGCEGGADQIHTTIDGLGERNGIPALAETAVALTLIYKSSNDFRLHM
                     LKDLSKTISEYTDLEIPESKPIVGDSAYTHKAGTHLAAILKNPSAYEIIEPRIVGNRR
                     KIVFGELAGKNGASYLLSLLGLETGLHEAETMARGLKELRMGDILELYLDDRLERKIL
                     NDASLKVNTKE"
     gene            complement(4057..4482)
                     /gene="lysM"
                     /locus_tag="VHF44_03090"
     CDS             complement(4057..4482)
                     /gene="lysM"
                     /locus_tag="VHF44_03090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0043565 - sequence-specific DNA binding
                     [Evidence IEA];
                     GO_process: GO:0019878 - lysine biosynthetic process via
                     aminoadipic acid [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HTH-type transcriptional regulator LysM"
                     /protein_id="HEX2124570.1"
                     /translation="MSNNIDSVDDKIIRILQSDSRKSFVEIADEIRLSESAVRRRVKN
                     LIDNGIIKRFTIELYAGNKTSAITLISVSSTADTSIVSSNLMKLNGVEVIYEITGQYD
                     IAAIIAAPTIAEINQYIDDVRKIEGVSDTNTVIILKTIR"
     gene            complement(4472..>4776)
                     /locus_tag="VHF44_03095"
     CDS             complement(4472..>4776)
                     /locus_tag="VHF44_03095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008483 - transaminase activity [Evidence
                     IEA];
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="aminotransferase class III-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX2124571.1"
                     /translation="LVENAAKVGRYFKEGLLMLKDSHKIIRDVRGLGLMLAVELRFDV
                     KDVLFDGIKNGLLMLYSGRSIIRLLPPLVIDEDIVSIILKKMDELLTKEERRRNVK"
BASE COUNT         1359 a         1010 c          762 g         1645 t
ORIGIN      
        1 tccagagagt aaattatcaa agactacatt atatacacta atagatgaat tcgatcccga
       61 catcattgta actgatcttc caaacttata catatgtaga ccactttcac cgattaatga
      121 agtaatggca gacgcagaat gtactacatc tacattgatc aagttttttc tcgcccgcac
      181 ttccaattct gatagggttg ttgcaatcaa gggatcacca tacgttatca gagcaacatt
      241 ttcatttttt gcctgttcaa gtatctggtt tccatcttct acaaaccatc gttctgcagg
      301 tatcatcttc cttttattat cgtatcctcc tcctcctatc aaagaattca aattaaataa
      361 gtcgtcctcg tataatggac tcgtaaaccg ctcgaaatag attatatcgc atttcttcaa
      421 gatctccaaa gtgtgaaggc taacaccttt gtaaccatta acgcctattc cgattagcca
      481 cagcatagca agaagtgttt tgttacctct atattttggc tttgctgtca tttaattttt
      541 tgttgtgatg aaatctagac atatggaata atgctctgac aaaaacatct atactcgaaa
      601 catattcttc aatctgaact ctttcatttg ccgtatggga tgcatgcggg tcaccaggtc
      661 cataggtaac aacaggtata ttcaatgcat ttcctagtat attcatatct cctgtgcctg
      721 tctttcttaa aagaattggt cttttttttt taatatcttg aattgaaagt gacaaggctc
      781 taaccaaggg agaattaagg tctgcttcaa agggctctgt attatcttca attctgtaaa
      841 ctgcttttat tcctttattt atagcaactt tattaacaac accatctatc aatttgagaa
      901 cctttccaca tgtagtattt gtaggtattc ggatatctat tgttatcctg catgtctggg
      961 gtgtaacatt atggcttgaa cctcctgtta tttcagttat gctacagctt attgaatttg
     1021 ccctggtttc ttttacgtgt agtatctcta tctctgattt gattgcgttc caaaaatcat
     1081 atatttcttc aattgaattt ttagctaacc acggagcact tgcatgcgca ctattgccaa
     1141 catcacatgt aagtctgatt gctaatcggc ctttatatgc gatagttatg ttttcgatgc
     1201 cacttggttc cccaaaaatt gcataatcta ccgaaagttt gcccttcact aactgtttta
     1261 ttcctgttgc atttccttct tcatctacaa caccagcgaa aattattgtg cctgtctgtt
     1321 ttggaaattc tgcggcagct aatagcatgg aaataagagg agcctttgca tcagatgctc
     1381 cacgaccata aagaaatcca tcttctattc taacaggaat ctgtcctgga acagtatcca
     1441 tatgaccaca aagcaatatt tttggttcac catttccttt aacagcaatg atgtttccta
     1501 cattgtcaat atggacctgt tcaaacccaa gttcgttaac acacttgtcc tttatcaggt
     1561 ttgctaacga agcttcagat cttgatggtg tatattgttc cagagctttc cttaagaatt
     1621 caaccgcata attggaggaa accaatttct atactatgct agtttgacag ctgtaaagca
     1681 tagtcaatca ttaatcctgg aacatctata ccggtcactc taactgtatt tttaaattca
     1741 gttgtattgt taacttcatg aaccattaaa ccagtctctt cactttccat taggtcaaca
     1801 ccaactatgt taccacccac tgcgtttgtg gcttttatgc agatatcttc tagttcattt
     1861 gtaataggac aagttttggc atagcctcct aaggccatgt tcgttttcca ttctccttga
     1921 ctagaataac gataaatggc tgcaatgacg gcatcaccta ctacaatggc cctaatatct
     1981 cttggcggac gtttgacgaa ttcttcaaag aagtatacat gataaagtgg aaacatatgc
     2041 tcgcgatctt ctattatggc cttagctgcc tctgtatcac gtagaagggc aattaatctt
     2101 ccccagcttc ctattgtagg cttaataacg gcaggataac ctatactatc gagggcagat
     2161 atagcagaat ctgcagaaaa tgcagtaaat gcattaggcg tcttaattcc tgccttttga
     2221 agctccatat gagcgaataa cttattacca caaagaatag cagtacggag tgaatttatt
     2281 atatgtgctc caagtccttc aagtgcagca gtcgaatgaa gactcttaaa atagctaact
     2341 gtacgctgaa tgataatttt atctacatat tttgaatttt tatcatttag atcaattgag
     2401 agagtcttac agtcaacatt attaatttca actcctttct ttttagcagc ttcatagagc
     2461 gccttttctt cccatctaat gttgtcataa agaatggtaa gagaagatat cgatgtgcct
     2521 tttgtcactg cccccaatcc tcgccgacta cttgggccgg tttaatgtta aatccttcat
     2581 ctactttcag taattcataa cttgcaccgc agtctggaca cgttacaatt tcgccttcga
     2641 tcgagtcagc gggaattttg atttcagcat cgcattctgg acatttgatc atattattat
     2701 ctactcctta gtatttactt tcagagaagc atcattaagt atctttctct ctaatctatc
     2761 atctaagtat aattccaaaa tatctcccat acgaagttct tttaatccac gagccatagt
     2821 ctctgcttcg tgcagacctg tttctaatcc tagtaacgat aataaataag atgccccatt
     2881 ttttcctgcg agttctccaa atactatttt acgtctgtta cctacaattc taggttctat
     2941 tatctcatat gctgatggat tctttagaat cgcggcaaga tgagtgcctg ctttatgcgt
     3001 gtatgcacta tctccaacga taggctttga ttctgggatt tctaaatcag tatattctga
     3061 gattgtttta gacaagtctt ttagcatatg caatcgaaaa tcattacttg atttataaat
     3121 tagagtgagt gcgaccgcag tttcagctaa tgcaggaata ccattacgtt ctcctaaccc
     3181 atctatggta gtatgaattt ggtccgcacc tccttcgcat cctgctaggg catttgctaa
     3241 cgctaatcca acgtcgttat gacaatgcac gtcaagtgaa ctttttgata tatctatatt
     3301 atcataaacc atcttgacta aattatacat tccacgggga ctcataatcc ctaccgtatc
     3361 tggaatacta attctttcaa ttcctcgttt gttcatctcc tcgcacatat caattaaaaa
     3421 agacggatcg gttctacttg cgtcttccat tgtaaatcgt gcctttaatc catgggactt
     3481 gatgtagtca gcaacttcca atgctcttat cttagcagct tccctgttaa tttttaattt
     3541 cgctgacaga tgaatatcgg aaatacccat atatgtagca atccatgttg ccccagaatc
     3601 gatggcaaca tctacatcag attttattgc ccgtacatgg gccaaaatgt cggcccttaa
     3661 accttgtttt ataatagttt tcgtagcctg gtaatgatct gacgatacta tggggctaat
     3721 ttctatttga tcaacaccaa aagagtctag catccatgcg atttgaattc tctgctttat
     3781 agtgaaagct actccaggat gctgctctcc ttctctaagc gtagagtcaa gaattctaat
     3841 cctttttcta ttattgtttg attgattata gaaatgcgca aagtaattcg gatcatccga
     3901 ttttagtgac attcgttaca ataaacaacc cctttcgtat tcaatataaa ctttatcgca
     3961 gtcaaaatag cagaacgcaa cgtttttgtt actttttatt gacgagtggc cagataaata
     4021 tctaaattta cgaagaataa cgagaacatc aagaaattag cgtatagttt ttagaattat
     4081 taccgtattg gtgtctgaga caccttctat tttacgtaca tcatcaatat attggttaat
     4141 ctctgcgatg gtaggagccg caatgattgc agcgatatca tattgacctg taatctcata
     4201 tattacttcc actccattaa gtttcattag atttgaggat acaatagatg tatctgctgt
     4261 agaacttact gaaatgagag ttatggcgct tgttttatta ccggcgtata attcaattgt
     4321 aaatcgttta attataccat tatctataag attctttacg cgccttctaa ccgccgattc
     4381 tgataatctt atttcatcag caatttcaac aaatgatttg cgagaatcac tttgtaaaat
     4441 ccttataatc ttgtcatcaa ccgaatcaat attatttgac atttctcctt ctttcctcct
     4501 tcgttaatag ctcatccatt ttttttaaaa tgatggaaac aatgtcttcg tcaatcacca
     4561 aaggaggaag taatctgatt atgcttcttc ctgaatatag catcagtaat ccatttttta
     4621 ttccatcgaa aagcacatct ttcacatcga aacgcaactc aacggcaagc atcagaccga
     4681 gacctctaac gtctctgatt atcttatgac tgtcttttaa catcagaagg ccttctttaa
     4741 agtatctacc gacttttgcc gcgttttcaa ctaatt
//
LOCUS       DATABJ010000188         2076 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1020143, whole genome shotgun sequence.
ACCESSION   DATABJ010000188 DATABJ010000000
VERSION     DATABJ010000188.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2076)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2076)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2076
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1020143"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..595
                     /locus_tag="VHF44_03100"
     CDS             <1..595
                     /locus_tag="VHF44_03100"
                     /inference="COORDINATES: protein motif:HMM:NF018595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043231 - intracellular membrane-bounded
                     organelle [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="CDGSH iron-sulfur domain-containing protein"
                     /protein_id="HEX2124572.1"
                     /translation="NSEGEPLSTISGVALCRCGASKNKPFCDGTHGTIGFSSENKTNT
                     ADNSGDHMIKDKRKSYVGKEITIHDNRKICSHAAECVNNLSSVFKLNARPWISPDAAK
                     REEIIDTIRKCPSGALSYSIDGIEYRDQNERKPIVTVSKDGPYVITGGIDLIGDNIQF
                     AEGSSREHYTLCRCGASNNKPFCDGMHRTISFKDDKN"
     gene            complement(1017..2012)
                     /locus_tag="VHF44_03105"
     CDS             complement(1017..2012)
                     /locus_tag="VHF44_03105"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX2124573.1"
                     /translation="MAIEQRQTILNMYNSGIIPEVIALQMDKSKEEILQVIEKTKTEE
                     EKKNKNKVGLSLSSSKVELRKDSSIPLISKVYIDKTVNIDHAIKHAQSRMWKALTVKS
                     DFNISMEETQNALNNYAESKATFVILHIDLVDSTKLSMTLPINRLVTIIQAFSQEMSV
                     MVAAYGGYVLKYIGDAVLAFFIVDSPNKLYLRCINALECACSMIKVVRQGINPILNQY
                     DYPELKVRIGIDVGENAVVQFGWDTHTLDGKVITKSPHFDILGYTISIATKMTVFAKP
                     DQIVIGQLIYDVLEEDKQSTFRLLPINRQIWDFFSNNTGGIYNLYSSLNESEYKV"
BASE COUNT          688 a          352 c          355 g          681 t
ORIGIN      
        1 gaactcagaa ggtgaaccac tttcaactat aagcggagtc gccttgtgta ggtgtggagc
       61 atcaaagaat aaaccatttt gtgatggtac acatggaaca attggcttct ctagtgaaaa
      121 taaaactaat accgctgaca atagcggtga tcatatgatc aaagataaaa gaaaaagcta
      181 tgtgggtaaa gagataacta ttcatgataa tagaaagata tgttctcatg ctgcagagtg
      241 tgtaaataac ttatcttccg ttttcaaatt aaatgcaagg ccatggatta gtcctgatgc
      301 ggcaaaaaga gaagaaataa ttgatacaat aagaaagtgt ccctctggtg ctcttagcta
      361 ttctatcgat ggtatagaat atagggacca aaatgagaga aaaccaatag tcacagtatc
      421 aaaagatgga ccgtatgtta ttactggagg tatagatcta ataggagata atatacagtt
      481 tgcagaagga tcatcaagag aacactatac tctttgcaga tgtggtgctt ccaacaataa
      541 gccgttttgt gatggtatgc atagaacaat cagtttcaaa gatgacaaaa actaatcctt
      601 aattcactta tctaataact agtgatgtac tgtgttagga tctgtatatt ttttgtgaac
      661 agagttggta ttcttttgga aattgctact actcctcctg gtttatgata tacgaaaaag
      721 ttgaggacct catatacgtc tcttgctttc tcctggtttg aatcatgcac aaagacctag
      781 agaaatcctg ccttctgacg catactcaag aaaggaaatg aggatgtaat ggagtccgtt
      841 aaggtagagt agaattaaaa caaaaatgga agagaaaact caacttggtt taacataagt
      901 ttgtccatta aaataaaaat aggagtagga gaagcaagaa attgacacat ttcaagttaa
      961 taatttgcta aattgattgt gaatttatct attggatgtc tctgattgct atcagtttat
     1021 actttatatt cactttcatt taagctacta tacagattgt aaatacctcc tgtattgtta
     1081 ctaaaaaaat cccaaatttg tcgattaatt ggtagaagcc taaatgtaga ttgcttatct
     1141 tcttctaata catcatatat taattggcct attacaattt gatctggttt tgcaaaaaca
     1201 gtcattttgg ttgcaatact aatagtataa cctaaaatgt caaaatgagg gcttttcgta
     1261 atcacttttc catctaatgt atgggtatcc catccaaatt gaactactgc attttcacca
     1321 acatcaatac caattcttac ttttaactca gggtagtcat actgatttaa aataggattt
     1381 attccttgac gaactacctt gatcattgaa catgcacatt ccaatgcatt aatacaacgt
     1441 agatacaact tattgggcga atctacaatg aaaaatgcca aaactgcatc tcctatatac
     1501 tttaacacat aaccaccata cgctgctacc ataacggaca tttcctgaga aaatgcctga
     1561 attattgtaa caagcctatt tataggaaga gtcattgata atttggtgga gtcaacaaga
     1621 tcaatatgca ggatcacaaa agtagcctta gattctgcat aattatttag agcattctgg
     1681 gtttcttcca ttgaaatgtt aaagtcagac tttacagtta gagccttcca cattctcgat
     1741 tgtgcatgtt ttatggcatg atctatattg acagttttat cgatgtaaac tttacttatc
     1801 aatggaatgc tggaatcttt tcttagctct acttttgatg acgacaacga tagccctacc
     1861 ttgttcttat tcttcttctc ttcctctgtt tttgttttct ctataacttg aagaatctct
     1921 tctttgcttt tatccatttg aagtgctatc acctctggga taattccaga attgtacata
     1981 ttaagaatag tttgtctttg ttctatcgcc aaacgatatc accaatatat atatggaaat
     2041 tgcttatcat gacttttcta aggtcaacct gataat
//
LOCUS       DATABJ010000189         4381 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1423828, whole genome shotgun sequence.
ACCESSION   DATABJ010000189 DATABJ010000000
VERSION     DATABJ010000189.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4381)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4381)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4381
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1423828"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            557..1354
                     /gene="murI"
                     /locus_tag="VHF44_03110"
     CDS             557..1354
                     /gene="murI"
                     /locus_tag="VHF44_03110"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: protein motif:HMM:TIGR00067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008881 - glutamate racemase activity
                     [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEX2124574.1"
                     /translation="MINTPVAVFDSGIGSLSIIQELKKEIPHENLLYFADKAHFPYGN
                     KSATQLRDIILNTVNYLERYKPKLTVIASNTPSIAILDQIRRMVNVPLIGIRPPLKEA
                     CRLTKKKHIGIMATKLTINSKELENQIKREVPQKILVTKFNASPIIELIEKGIHISNE
                     RKTFDTINQVIGYEVDKEIDVITLSSTHLPFVKSYLNSLVPTINFVDSAKAVAKEVRK
                     YLIFNRMLKKTGNGRLQILVSDEKRQFEKIIHAMGIREPVEEIFLTF"
     gene            1458..3587
                     /locus_tag="VHF44_03115"
     CDS             1458..3587
                     /locus_tag="VHF44_03115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HEX2124575.1"
                     /translation="MSKRIRVGIDVGGTFTKAVAMDIVEGKIIGKVTVLTTHSSREGV
                     ATGIVKALTELMQKHNIKRTDIELISHSTTQAVNALLEGDTAKVGIIGMGVGLEKSNI
                     IRRTNIKDIELAPNKYLRTCYRFLDTSKYLQNQEVLSAISELKREGAEVLIISEAYGV
                     DDPSNEEFVMRKSDIPATAGHELTGIYGLEIRTLTAAINAGILPKAMSTAKFVESAVQ
                     KEQIAAPIMIMKGDGGVTDMKTFRSKPIITVLSGPAASVAGALLYLRILNGVFIEIGG
                     TSTNVCIIKDGKPEIRYVTIMQHSTCIRSLDVRVAGIAGGSLVRWSGRKITDVGPRSA
                     HIAGLPYSCFADIEELEAGQIITFRPKDGDPMDYVAIETSGGKRFAITNTCAANALGL
                     IPEGDYAYANPETAKFALSILAQRIGVTTQEASKSILEISSKKILQIVEPMLKEYKLR
                     KDDIVIIGGGGGASVLVPYLAQKLQIKYTISEHSEVVSSIGVAAAMIHEERERTINSP
                     NPNDASSLMEEVKQIALNRGATPESLTLQSEYISERSLLRATAIGNVSLDIGTVDAKK
                     INYEEARKLAYEFYGNKERVHSIHNMENYHVFACEIYKRKLFLKSRKQSVLVLDKYGR
                     VRLSIENAVIFNGSPKQVADKIDLLLLRSNRNATSNDLAPQVHILDGVKIVDFSSLIA
                     PEQVSRAVRYELEKVSNQHVTAIIKLL"
     gene            3845..>4381
                     /gene="prs"
                     /locus_tag="VHF44_03120"
     CDS             3845..>4381
                     /gene="prs"
                     /locus_tag="VHF44_03120"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004749 - ribose phosphate diphosphokinase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HEX2124576.1"
                     /translation="MQKELSVIAGPSSPDLAAKIAQNLGAELIPVDVRIFTDSESKIR
                     MGNVQKKNCVIVQSTYPPTDRHLLQTLMMIKKCTDDLASDICTVIPYMAYARQDRAFQ
                     DGEVISMELIAKLLEAAGNKRLITIDIHSALALSYFRIEAQNISSIPLLANHAANNMK
                     LNRTVVVSPDAGGVKRAYE"
BASE COUNT         1596 a          693 c          824 g         1268 t
ORIGIN      
        1 atcattttct agccttcgag aaaatgaagg atctatagaa agattagagg aagtagaaaa
       61 atactttata ccatctaaaa gtaagagatg gtaggaaata tcaactccta atttagattg
      121 tatgtggcgt atgtaggcat atgccgaatc tttaagataa caatacagaa tattattaat
      181 atattataat attgacaatg aaaatagaca ttctaacaga tattaatttt ggttattcct
      241 atagaaacaa aagctgatcg aattagttag gcaatttata tctcaactca tatttgaata
      301 tagaagaaat tgaaaaatac ctagatagca agtactttcc attatgtttc gttagtttga
      361 cttgacaaaa aatttccatg cgatatatta agaaaatatg cctttgatag aattgaatag
      421 acaagaatat aatttataaa agctgataat atcccaaaga ggatatgata ttagatagaa
      481 tcagaaagaa tgcacaagta ttataattag gataataata actacattta tacttaataa
      541 ttaaaaatta tacatattga taaatactcc cgtagctgta ttcgactctg gtattggatc
      601 gctatcaatt atacaagagt taaaaaaaga aataccacat gagaatttat tatattttgc
      661 tgataaagca cactttccct atggaaataa atcagccact cagctacgcg atataatatt
      721 aaacactgta aattatctag aaagatataa accgaagcta actgtaattg cttcaaatac
      781 tccttctata gctatattag atcaaatcag gaggatggta aatgtacctt taataggaat
      841 tagaccgcct ctaaaagaag cgtgtaggtt aacaaagaag aagcatattg gaataatggc
      901 aacaaaactt acaatcaata gcaaggagct tgaaaatcag attaaaagag aagtacctca
      961 aaaaatcctc gttacaaagt ttaatgcttc gcctataata gaattaatcg agaagggaat
     1021 tcatatttct aatgagcgca aaacatttga tacaataaac caggtaatag gctatgaagt
     1081 agataaagaa atagatgtga taactctatc tagtacgcat cttccttttg tgaaatccta
     1141 tcttaattct cttgtaccta ccataaattt tgtagattct gcgaaggcag tagcgaagga
     1201 ggttagaaaa tatttaatat ttaatcgaat gctaaagaaa acaggtaatg gcagattgca
     1261 aatacttgtt tcagatgaaa aaagacaatt tgagaaaatt atacatgcta tgggtataag
     1321 agaacctgtt gaagagatat ttcttacttt ttgaaaggac aaattaaatt actatttata
     1381 gcccgatatg aagttttgat accgtttaaa tattatttaa tgaactcaaa attacgcatt
     1441 cctaagtagt tttgcaaatg agtaaaagaa ttagagttgg tatagatgtc ggaggaacct
     1501 tcactaaagc tgttgctatg gatatagtag aaggaaaaat tataggtaaa gttacagttc
     1561 tcacaactca ctcttccaga gaaggtgtcg ccactgggat tgtaaaagca ttaactgaat
     1621 taatgcaaaa gcacaatatt aaacgtactg acattgaatt gatctctcat agtacgaccc
     1681 aggcagttaa cgcattactt gaaggggata ctgctaaagt tgggatcatt ggcatgggcg
     1741 tgggattgga aaagtccaac ataataagac gaacgaacat taaggacata gagctagcgc
     1801 caaataagta tctaaggacg tgttatcgat ttttagacac gtccaagtat ctacaaaacc
     1861 aagaagttct ttctgcaatt tccgaactaa aaagagaagg tgcagaggtg ttaataataa
     1921 gtgaagcgta cggagtagac gatccaagta atgaagaatt tgtcatgaga aaatcagata
     1981 ttcctgcaac tgctggtcac gaattaacag gcatatacgg tcttgagatt cgcacattaa
     2041 cagcagctat taatgcgggc attcttccca aggcaatgag tactgccaaa tttgttgaat
     2101 cggctgtcca gaaagaacaa atcgctgctc caatcatgat catgaaaggt gatggaggag
     2161 ttacggacat gaagaccttc cgaagtaagc ctataataac tgttctttca ggccctgctg
     2221 ctagtgttgc aggtgcatta ctatatcttc gtatattaaa tggagttttc atagagattg
     2281 gtggcacatc aacgaatgtc tgtataataa aggatggtaa accggagatc cgatatgtaa
     2341 caataatgca acattcaacg tgcatccggt cattagatgt tagagttgct ggtattgcag
     2401 gaggatctct tgtaagatgg tcaggaagaa aaataacaga tgttggtcca aggtctgcgc
     2461 atatagcagg tctaccgtac tcgtgcttcg ctgatataga agaattggaa gcaggtcaaa
     2521 ttattacttt tagaccaaag gatggcgatc ctatggatta cgttgctata gagacaagtg
     2581 gcggtaaacg tttcgcaatc acaaatacgt gtgctgccaa tgcattagga ttaatcccag
     2641 aaggcgatta tgcatatgca aatccagaga cagcaaaatt tgcactatct attctggctc
     2701 aaaggattgg agttacgact caagaagcat caaaatcaat tcttgaaata tcatctaaga
     2761 agatactcca aattgtagaa ccaatgctca aggagtacaa gttaagaaag gacgatattg
     2821 taattattgg aggcggtggg ggtgcatcag tattagttcc ttatttagca cagaaattgc
     2881 agattaagta cacaatttct gaacattcag aagtggtatc ttctattggt gtagcggcag
     2941 caatgataca tgaagaacgc gagaggacaa tcaatagtcc taatcctaat gatgcttctt
     3001 cattgatgga agaggtgaaa caaattgctc tgaaccgtgg tgctactcca gaatcactta
     3061 cccttcaatc tgaatacatt agcgagagat cattacttcg tgcaacagca ataggtaacg
     3121 ttagcctaga tataggcact gtagacgcaa agaaaatcaa ttatgaagaa gcaagaaagc
     3181 tggcatatga attctatgga aataaagaaa gagtccattc tatccataac atggaaaact
     3241 accatgtatt tgcatgtgaa atatacaaaa gaaaattgtt cctaaaatca agaaaacagt
     3301 cagtattagt actggacaag tatggccgtg taagactatc tattgaaaat gctgtaatat
     3361 ttaatggaag tcctaagcaa gttgcagata aaatcgatct cttacttcta cgttcaaaca
     3421 gaaatgcaac atctaatgac cttgctccac aggtgcacat tcttgatggc gtgaaaattg
     3481 tagacttttc tagtctaatt gcgcctgaac aagtttcaag ggctgtcaga tatgaattag
     3541 aaaaagttag caatcagcat gttacagcca ttatcaaatt actataatca ataatactct
     3601 taaattgtat aaaacacatt atattcttat ttttttgtct ttagaattta catattgaag
     3661 gtcttttaca cacatatcta taaaacggta tttaatgtga gaaaatcgtt agctaacagg
     3721 tgatattgag aatagagata ttctttagca atattacaag atatagctgg tcatattcgt
     3781 tatctatttg ataataaata ttaacatttt taagaatgag attgttccat aatctgttca
     3841 tctcttgcaa aaggaactct cggtaatagc tgggccatcc tctccagatc ttgctgcaaa
     3901 aattgctcaa aatttgggag cagaattgat ccccgtagat gttcggatat ttacagatag
     3961 cgaaagcaaa ataagaatgg gcaacgttca aaaaaaaaat tgtgttattg ttcaatcgac
     4021 atatcctccc accgatcgac atcttttgca aacactaatg atgatcaaaa aatgtactga
     4081 cgacctagca tcagatattt gtactgtcat cccatacatg gcatatgcac gccaggatag
     4141 ggcatttcaa gatggagaag ttattagcat ggaattaatt gcaaaactac tagaagctgc
     4201 tgggaataaa cgattgataa ctatagacat tcatagtgca ctagcattat catattttag
     4261 aattgaagct caaaatattt cgtcaattcc tcttttagca aatcatgccg ctaataatat
     4321 gaaacttaat agaaccgttg ttgtttcgcc agatgcagga ggagtaaaaa gagcatatga
     4381 a
//
LOCUS       DATABJ010000190         3128 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1237933, whole genome shotgun sequence.
ACCESSION   DATABJ010000190 DATABJ010000000
VERSION     DATABJ010000190.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3128)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3128)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3128
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1237933"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..877
                     /locus_tag="VHF44_03125"
     CDS             <1..877
                     /locus_tag="VHF44_03125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="TFIIB-type zinc ribbon-containing protein"
                     /protein_id="HEX2124577.1"
                     /translation="CSDGQMVTDPESGEIICRNCGIVMLDKIQESRPEWRAFTTDDGN
                     DRSRTGTPSSLARHDMGLSTVIGRADKDASGNTIDVSMRSTMDRLRAWDFRTQAHTPT
                     DRNLRQAFSELERLKDKLGLSDVIIEKTAYIYRKAQERGLVRGRTISSVLAAAIYIAC
                     REIGTSRTLKDIASISNIKRKDIARTYRLLVLELNYKIPMVDPIKCIVRVANKANLSE
                     KTKRQAMNIMHSVTRSGISAGKDPMGLAASVLYLSCMNTGESRTQTEISEAAGVTEVT
                     VRNRYKNLKRQLDLN"
     gene            complement(2053..>3128)
                     /gene="pheT"
                     /locus_tag="VHF44_03130"
     CDS             complement(2053..>3128)
                     /gene="pheT"
                     /locus_tag="VHF44_03130"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: protein motif:HMM:TIGR00471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009328 - phenylalanine-tRNA ligase
                     complex [Evidence IEA];
                     GO_function: GO:0004826 - phenylalanine-tRNA ligase
                     activity [Evidence IEA];
                     GO_process: GO:0006432 - phenylalanyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEX2124578.1"
                     /translation="ILVDEDNNVLSFPPIINGNVTKVTPKTNNLFIEITANNEKTAED
                     ILAILAVTFHDIGFEIHSVSIRNSGMMEFTPKMDTLSIDVDVSYINSILGLELTRKEI
                     VLFLKKSRLDAYAADEDTDIITCVVPRYRTDILHAIDIVEEVAIGYGVYNLKPTMSAW
                     NSVGQKNSLSIYFDIVRRTLAGLNMLEVVNFSLVNKNSQYELIGLKTPDNVLTVDATK
                     SKDHEVLRASMIPSLLQSLSHNVHSQYPQKLFEIGKIFYRDNTIKEIWCLAAVIAHND
                     ADFTEIKSIMQTFLKVAFDKDVFTQENANSFFIEGRSARVILDKKHNIGIIGEVTPLA
                     IDNFKIRVPVSAFELNLSQLLGI"
BASE COUNT         1047 a          547 c          539 g          995 t
ORIGIN      
        1 atgtagcgat ggacagatgg tcacagatcc agaatcgggt gaaatcattt gcaggaattg
       61 cggaatagta atgcttgata agattcaaga aagcagacca gaatggcgag cttttaccac
      121 ggatgacggt aatgacagaa gtaggacagg aactcctagc tcattggcta ggcatgacat
      181 gggtctttcc acagtgatag gaagagcaga taaagatgcc agcggaaata caattgatgt
      241 ttccatgcgt tctacgatgg acagattgag agcatgggac tttagaacgc aggcgcatac
      301 gcctacagac agaaatctca gacaagcttt cagcgagctt gaaaggttaa aggataagct
      361 cggattatca gatgtgataa tcgaaaaaac ggcttatatt tatcgcaaag cacaagagcg
      421 tggattggtt cgaggtagaa ctatctcgtc agtattagca gctgcaatat atatcgcctg
      481 cagagagatt ggaacatcac gaacactcaa ggatatcgct tcgattagca atatcaaacg
      541 taaagatatt gcaagaacct atagactttt ggttctcgaa cttaattata aaattcctat
      601 ggttgaccct ataaagtgta ttgttagagt agccaacaaa gcaaatctta gcgagaaaac
      661 aaagcgtcaa gcaatgaata tcatgcatag tgtcactaga agtggtattt cggccggtaa
      721 agatcctatg ggacttgccg catcagttct ttatctctct tgtatgaata ctggggaaag
      781 cagaactcaa acagaaatat ctgaagcagc aggtgtaaca gaagtaaccg tcagaaatag
      841 gtataagaat ctaaagagac aacttgatct caactagatt cacaaatcat atttaattat
      901 tatatgtaga ggatatatga aatctatagc agacaaataa tctcatagca ttctgtattt
      961 ggccgatctt tcttccaagt aataattttg cataacaaca accaacaaaa aatttgaagt
     1021 ggtcatacac attgcgagca taaaacctca agaggacaaa tcagtagaga ttagaaaaat
     1081 gggaaaatag tttacgactt ttaatgggtt aaaataagat aaatatagat tattcctatt
     1141 gagaaatata tttttacaaa actgtcataa ccatcactta cgtccaatag tataattgaa
     1201 caataagagt tgacatggaa atataaaaga caataggtat tgcttcatta aagttactac
     1261 ctatatcttt agatatttgt ctttttattt aactacgatt cattaaatta ttgctgtaag
     1321 cagtctatta gttttctgtt ttaattcttt cttcataatt aatacttgtc taacttgtag
     1381 aaatttaata cttaatactt taaggacgca tcacttttat gatcatctaa tatccgtacg
     1441 caccatctgt tggcttgcat tggttacaga gtttgagatc cttatttcga tccgatttta
     1501 ccattgaaac ttcaacattt tccagtccac attgatcgca ttttccaatc atcttaatca
     1561 tatacatcat tgtataagaa ataaggattg tatatgtgtc taattgacag tgaaaatgct
     1621 gatgaccttt aatgagtatt ctaaatcatc gatctgctat ggatgtagat tgaaaaacta
     1681 gtatatacat aggagaatca aagaaggttg ttaggcgtaa ctttgcgcta atcatgataa
     1741 ttagaaataa tcatcatcta tattattgta ttttatagat ctgcaattac cattaatcac
     1801 aatagactta ctattcatct atacataatc aggagatcta tgtataaaat gtgccccgcc
     1861 tctgacccac acgtattcac tggtagccat acacacatgt gtattcctcc tcgtgtactc
     1921 tctttaacgg ggtggcatat tgtagtgcgt atgggtgaaa attagagcca tgaataatca
     1981 tactcttcca tcatacctca cgcactaata atatgcaatt tacagatatt tattcacaaa
     2041 tataaacata aactatattc caagcaattg ggatagattt aactcaaaag ccgaaactgg
     2101 tactctaatt ttgaaattat ctatagctaa aggagtgact tctccgatta ttccgatatt
     2161 atgtttttta tccaaaatga ctcttgctga tctgccttca atgaaaaagg aatttgcatt
     2221 ttcttgcgta aaaacgtctt tgtcgaatgc gacttttagg aatgtctgca ttatcgattt
     2281 tatttccgta aaatccgcat cgttgtgtgc gataactgct gctaggcacc agatttcctt
     2341 gattgtattg tctcgataga aaatttttcc tatttcaaat aatttttgag gatattgcga
     2401 gtgcacgtta tgagatagtg attgtaacag agatggaatc atagatgctc tcaatacttc
     2461 atggtcctta ctttttgttg catccaccgt tagaacatta tcaggtgttt ttaatccaat
     2521 aagctcatat tgggagtttt tgttaacaag gctaaaatta acaacttcta gcatatttaa
     2581 tcctgctaat gttcttctta caatgtcaaa ataaattgaa agagaatttt tctgaccaac
     2641 agaattccaa gctgacattg taggttttaa gttatagact ccatatccta ttgctacttc
     2701 ctctacaata tctattgcat gaagtatatc cgttcggtac ctaggaacga cacatgtaat
     2761 aatatctgta tcttcatctg cagcataggc atccaatcta cttttcttca aaaacagtac
     2821 gatttctttc ctagttaatt ctagcccaag tatactatta atataactaa catctacatc
     2881 aatagatagt gtatccatct ttggtgtaaa ctccatcatt cctgaatttc taatagaaac
     2941 actatgaatc tcaaagccaa tatcatggaa tgtaactgct aatatagcaa gaatatcctc
     3001 cgctgtcttt tcattgttcg ctgtaatctc gataaagaga ttattagtct taggagttac
     3061 cttagttaca ttaccattga tgataggagg aaaggacaga acattattat cttcatcaac
     3121 aagtatag
//
LOCUS       DATABJ010000191         2816 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1022111, whole genome shotgun sequence.
ACCESSION   DATABJ010000191 DATABJ010000000
VERSION     DATABJ010000191.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2816)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2816)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2816
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1022111"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..764)
                     /gene="purC"
                     /locus_tag="VHF44_03135"
     CDS             complement(<1..764)
                     /gene="purC"
                     /locus_tag="VHF44_03135"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004639 -
                     phosphoribosylaminoimidazolesuccinocarboxamide synthase
                     activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEX2124579.1"
                     /translation="MRMFRKGKVKDLYILDNGNILFHFTDRVSAFDIKMVNSIPRKGE
                     VLCRFAKFWFDSLDTKNHMVRIHNSDKMEVKRMKMIPLECIVRGYFYGTLEERYHKGI
                     ARDLLSTSFVPIKAAKLPEPIFDPTTKSEEHDIPKTKEEIVSSGLLSKEDYEYVKETS
                     LMLYKKMSSIVEKSGFIIADVKFEFGRDLRTGEILLGDSLGPDEYRLWLRCHYMPGKS
                     QESYDKQLLRDWLVKIGFKETITEYSKKGEKPPPPI"
     gene            complement(849..923)
                     /locus_tag="VHF44_03140"
     tRNA            complement(849..923)
                     /locus_tag="VHF44_03140"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(886..888),aa:Thr,seq:tgt)
     gene            1038..1325
                     /gene="purS"
                     /locus_tag="VHF44_03145"
     CDS             1038..1325
                     /gene="purS"
                     /locus_tag="VHF44_03145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEX2124580.1"
                     /translation="MIEEESSYGKFIVLVTIENKQFVNDPEGETIHRDLIVKGGYTNV
                     ESVRSAKTLKMIVTAKSQKSAEKIVTNLCRELRIFNPVISECIVKAIGQIK"
     gene            complement(1513..1932)
                     /locus_tag="VHF44_03150"
     CDS             complement(1513..1932)
                     /locus_tag="VHF44_03150"
                     /inference="COORDINATES: protein motif:HMM:NF012780.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX2124581.1"
                     /translation="MPRVVRDIMTKYVVTIDANGTALEAAKLMAEKGISSLIVLDNQN
                     PVGIVTERDFVKKICIKELQVSRVKVKEMMSKIRTFADPETPIEVAVQRMVNHKIRRL
                     PIMENGKVVGIITVTDLAKHLRTTLLIEGVLSGNSDS"
     gene            2126..>2816
                     /gene="purQ"
                     /locus_tag="VHF44_03155"
     CDS             2126..>2816
                     /gene="purQ"
                     /locus_tag="VHF44_03155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HEX2124582.1"
                     /translation="MSKIGIVVFPGSNCDQDVHNAFQNYFGIQTDMLWHTKDNLSNYD
                     AIIIPGGFAYGDRLRAGVIAARSPIMHAVKRLAKDGIPILGICNGFQILIESGILPGA
                     LTTNNTLQFVCGWTTVKIKKNKTPFTNKFKRNKDIIIPIAHGEGRYIADDKDLRYLKK
                     KNRIVLKYTKNDPNGSTDLIAGICNSDGNVMGMMPHPERAIESILVPDRISSQAVMIF
                     TSLLSYLNIKHH"
BASE COUNT          944 a          515 c          448 g          909 t
ORIGIN      
        1 attataggag gagggggttt ttctcctttt tttgaatatt cagttatggt ttctttaaaa
       61 ccaattttta caagccaatc ccgtaacaat tgtttatcgt agctttcctg gctttttcca
      121 ggcatataat gacatcttag ccaaagtcga tattcatccg ggccaaggga atcacctaat
      181 aagatttccc cagttcttag atctcgaccg aattcaaatt taacatctgc gataataaat
      241 ccagactttt caacaattga gctcattttt ttatacaaca taagggaggt ttcttttaca
      301 tattcataat cttcttttga caatagacca gaagatacta tttcttcttt tgttttaggg
      361 atatcatgtt cttcagattt tgttgtcgga tcaaatatag gctcaggtaa ttttgcagcc
      421 tttattggca caaaagaagt tgaaagaaga tcgcgtgcaa tccccttatg atatcgttct
      481 tccagagttc cataaaagta accgcgtact atacactcta aggggatcat cttcattctt
      541 ttaacctcca ttttgtcact attgtgaatc ctaaccatat gattttttgt atcgagagag
      601 tcgaaccaga attttgcaaa tctacaaaga acttcacctt ttcttggaat agaattaacc
      661 atctttatat caaacgcaga tacacgatca gtgaaatgaa ataaaatatt gccattatct
      721 aatatgtaca aatcttttac tttgccttta cgaaacatcc tcatttagat ttcttaattg
      781 actgttaaat aaaaattctt tttcctattg tcaagatgat gtctgatatc cttgaaatcc
      841 tcgattgaag gtcatggtgg gattcgaacc cacgacctaa ggtttacaaa accttcgctc
      901 ttaccaggct gagctacatg accagaaaat taagagaaat ctttgtcgag cgtaattaat
      961 actttcggca tagtcatgat ataatcctca caggtgagtt tgaatgattt aaaaggataa
     1021 tcgataaaga gataaacatg attgaagaag aatcatccta tggtaaattt attgttttag
     1081 ttacaataga aaacaaacaa tttgtcaatg atccagaagg tgaaactatt catcgtgacc
     1141 ttatagtaaa aggtggatat acaaatgttg agtcagtaag gtctgctaag acactgaaaa
     1201 tgatagtaac agctaaatct caaaaatcgg cagaaaaaat agttaccaat ctttgtcgag
     1261 agttacgcat ttttaatcct gtcataagtg aatgcatagt taaagcaatt ggtcaaatta
     1321 aataatctat tactgatttc atctattggt agctacatat ttttaaggat gataaatgtc
     1381 aaaatatttt tgaaggaata tagtaatata attcataact cagaaatgca ttagatgtat
     1441 agatatttct accaaagccc cttattaata tctagatgtt aagcctctaa aaatttgaaa
     1501 cttataattt tctcaagaat cactattccc cgaaaggact ccctcaatca gcaatgttgt
     1561 acgcaaatgt ttcgctaaat ctgtaactgt aataattccc acaactttac cattttccat
     1621 aatgggcaat ctacgaatct tatgatttac cattctctgc accgccactt cgataggagt
     1681 ctctggatcg gcaaaagtgc gaatctttga catcatttct ttgaccttta cacgcgatac
     1741 ctgtaattct ttaatacaaa ttttcttaac aaagtcacgt tcagttacaa tacctactgg
     1801 attttgattg tctaagacaa tcaatgagct aatgcctttt tcagccataa gtttggctgc
     1861 ttccaatgct gttccgtttg catcaatagt aactacatat tttgtcatta tatctcgaac
     1921 aaccctgggc attaactgta ctttcctgta ttgacaataa aaactttgaa cttattttgc
     1981 taaattcaaa tccattaaat catggtgagc acaactccat attaatttta caatataagg
     2041 ttaatactaa taatagaaat aaaaaataga cttcttttta cgaagacttt aatacaagca
     2101 tagtaaagtc aactctttat acaaaatgtc aaagattgga attgtggttt tccctggaag
     2161 caattgcgat caggacgtcc ataatgcatt tcaaaactac tttggaattc agacagatat
     2221 gctttggcat acaaaagaca atctctcaaa ttatgatgct attatcattc ctggcggttt
     2281 tgcttatggt gacagattac gcgcaggtgt catcgccgct cgaagcccaa taatgcatgc
     2341 ggtaaaaaga cttgctaaag acggtatccc gatccttggt atctgcaatg gctttcaaat
     2401 actcattgaa tcaggcatac tgccgggagc gttgacaact aacaataccc tccaatttgt
     2461 ctgcggctgg acaacagtta aaataaaaaa aaataaaaca ccatttacta acaaattcaa
     2521 aagaaataaa gatattatca ttccaattgc tcacggcgaa ggaagatata tagcagatga
     2581 caaagattta aggtatctaa aaaagaaaaa tagaatcgtc ttaaagtata caaagaacga
     2641 tccaaatgga tctactgatt tgattgctgg aatttgcaat agcgatggta atgtaatggg
     2701 aatgatgccc caccccgaaa gagccatcga gagcattctt gtacctgata ggatttctag
     2761 ccaggcagtt atgatattta cgtcattatt gtcctatcta aatattaaac accatt
//
LOCUS       DATABJ010000192         1703 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1024302, whole genome shotgun sequence.
ACCESSION   DATABJ010000192 DATABJ010000000
VERSION     DATABJ010000192.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1703)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1703)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1703
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1024302"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            390..1340
                     /locus_tag="VHF44_03160"
     CDS             390..1340
                     /locus_tag="VHF44_03160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homocysteine S-methyltransferase family protein"
                     /protein_id="HEX2124583.1"
                     /translation="MVESFSGALAKQIILFDGAMGTEIQRLNPNSNDFPDKKDGFNDG
                     LTLSRPEWIKQIHREYLKAGADCIETNTFGSNKLKLEEYGYGIKTVEPNKKAAELGRE
                     VCREFDDKPRYVIGSIGPTGYLPSSNDPDLGQISLDTIKEAFELQAQGLILGKVDALL
                     IETSQDILEVKLAIIGCHDAMHNLGKKVPLISNVTLDQYGKMLLGTNVQAAYTTVSDM
                     GIDVFGLNCSTGPVEMTPSVRWLSEQDDLPILVMPNAGMPQNEGGKAVYKMTPVEIRE
                     KLMDFINNYKNIRIIGGCCGTNPEHIAELRRMLDENHLKR"
     gene            1399..>1703
                     /locus_tag="VHF44_03165"
     CDS             1399..>1703
                     /locus_tag="VHF44_03165"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEX2124584.1"
                     /translation="MGKTPRVSSALKAVDIKQEPPPLIIGERLNTQGSKKAKEMVLMN
                     DFDGLVNLARAQVEDGAHCLDVCVATTERSDELEFMRTLVKRLSLEIEAPLVIDSTDP
                     "
BASE COUNT          610 a          263 c          347 g          483 t
ORIGIN      
        1 cttagttggt aaatgaattt attatgtata aattcaaacg gttcctctga aggtcataag
       61 aatatatata tgattgtgac gcaacatatt agcttcattc atttttacat atatctaaaa
      121 atacggcact acatccttta aaaaaagacc aggatgaaat atgataagtc tataagcaga
      181 taatagttat cttcttgaat taaaaaatta ttgattcctc tactaccttt tgatatcagt
      241 ggcgaagagt ctatacaata aacatattgg aaactcgata ttttgccaga ataataaaaa
      301 gcgctaagct catgaataag aaagaaaata aatggaaagt gacagaaacg tattaaacct
      361 atttacaata ttttgtatcc cattataata tggttgaatc atttagcgga gcacttgcaa
      421 aacagataat tctttttgac ggggccatgg gaacagaaat acagaggttg aatcccaatt
      481 ctaatgattt cccagataaa aaagatggtt ttaatgatgg tttaaccctt agcagaccag
      541 aatggatcaa acaaatccac agagaatact taaaagctgg agcagactgt atagagacaa
      601 atacatttgg aagtaataag ttaaagcttg aagaatatgg atatggtatc aaaactgttg
      661 aacccaataa aaaagctgct gaactcggaa gagaagtatg cagagaattc gatgataaac
      721 cacgctatgt tataggttct atagggccga cgggctatct accaagctca aatgatcctg
      781 accttggaca aatatctcta gatactatca aagaagcatt tgagctgcag gcacaaggtc
      841 tgattcttgg aaaggtagat gcactgctga ttgaaaccag ccaagatatt ctagaggtga
      901 aacttgccat cattggatgt catgatgcta tgcataattt aggaaaaaaa gttccattga
      961 tatcaaatgt tacactagat caatatggta agatgttgct cggaacaaat gttcaagcag
     1021 cttacactac agttagtgat atgggcatcg atgtttttgg tttaaattgc tctacgggtc
     1081 ccgtggaaat gacgccaagt gttagatggt taagtgagca agacgatttg ccgatattag
     1141 ttatgccgaa tgcaggaatg cctcaaaatg aaggaggtaa ggctgtatat aaaatgactc
     1201 cagttgaaat aagagagaaa cttatggatt tcattaataa ctataaaaat attcgcatta
     1261 ttggcggatg ctgtggaact aatcctgaac atattgctga gttacgtaga atgttagatg
     1321 aaaatcacct aaaaagatga tttagataag gataagattt tagttaggtt tttgaatcaa
     1381 agcaattgta gtagaaaaat ggggaagaca ccaagagtta gttctgcatt gaaggcagtc
     1441 gacattaaac aagaacctcc gcctctcata attggtgaac gccttaatac tcaaggttcc
     1501 aaaaaagcca aggagatggt attgatgaat gatttcgatg gtttagttaa tttagccaga
     1561 gcacaggtag aagatggtgc tcattgtctt gatgtctgtg tagcaactac cgaacgatca
     1621 gatgagctag aatttatgag aacactcgtc aagcgactaa gtcttgagat agaagcgcct
     1681 cttgtcattg attcaacaga tcc
//
LOCUS       DATABJ010000193         4625 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_579421, whole genome shotgun sequence.
ACCESSION   DATABJ010000193 DATABJ010000000
VERSION     DATABJ010000193.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4625)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4625)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4625
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_579421"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(460..1446)
                     /locus_tag="VHF44_03170"
                     /pseudo
     CDS             complement(460..1446)
                     /locus_tag="VHF44_03170"
                     /inference="COORDINATES: protein motif:HMM:NF014103.4"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1505..1648
                     /locus_tag="VHF44_03175"
     CDS             1505..1648
                     /locus_tag="VHF44_03175"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124585.1"
                     /translation="MDISLFNLAAGLKKAGVFGGTFFVNDAAGTNNLVFPSILSIKSL
                     LII"
     gene            1765..2439
                     /gene="rnhB"
                     /locus_tag="VHF44_03180"
     CDS             1765..2439
                     /gene="rnhB"
                     /locus_tag="VHF44_03180"
                     /inference="COORDINATES: protein motif:HMM:TIGR00729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004523 - RNA-DNA hybrid ribonuclease
                     activity [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEX2124586.1"
                     /translation="MQECKDILIGGVDEAGRGSIIGPLIIAGIAIKHLKLSELSKIGV
                     KDSKKLTKKLRANMFSRIVDLADSLCIYKIEPDEVDDNVFLNKLNKLEAEAMAVVINN
                     LHVDEVYIDCCDVNQERYKEYVKCHLVSCNTKLYSMHHADQLNIVVSAASIIAKIVRD
                     NEIQAIRRMHHSIGSGYPSDEKTMYFIREWVQKYKNAPWFARKSWRPLRTILYENRQV
                     KLTYFG"
     gene            complement(2427..3143)
                     /locus_tag="VHF44_03185"
     CDS             complement(2427..3143)
                     /locus_tag="VHF44_03185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fibrillarin-like rRNA/tRNA
                     2'-O-methyltransferase"
                     /protein_id="HEX2124587.1"
                     /translation="MTDNNDEVFVVQDDSHISAIEWIKVAGEKQISTLNLIKGNNVYG
                     EKLVKYNGDEYRIWDPFRSKLAGALKKGLKELPIMNGTKVLYLGASTGTTVSHVSDIV
                     GLKGIVFAVEPAVRVARELIENVASKRRNIIPIIEDARKPQSYFSVFGKVDVVYSDIA
                     QPDQTEIAVENCLIYLKPKGVMLIVIKTRSIDVTMDPKSVIEQEAKKIEKRGFHIEQI
                     IDLKPFDKDHALVYAVYYPK"
     gene            complement(3251..4525)
                     /locus_tag="VHF44_03190"
     CDS             complement(3251..4525)
                     /locus_tag="VHF44_03190"
                     /inference="COORDINATES: protein motif:HMM:NF013922.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124588.1"
                     /translation="MPKYCFVVLTELGLAVFDGNNNLINSVRFSNPVDSFRLVKSGSK
                     LPEIVQLIDKLSSYDDILVNEPTLAFHFRQAGLNSHTMSQEKQEEIQNTKPLLIVSSK
                     FADSETQAMQLLRNFAIELSSSKVKETSERLDLHIIQSINALDELDKIINTIGARMRE
                     WYGLHFPELDNLIQSLTAYAEIVSRSGVRANLTEEILEKAGIQNRKSEIIMDAAKRSK
                     GGDIAPENLAIVKNLAEQVISQSELRRILSDHIEVSMDNVAPNVKQLLTATVGARIIA
                     KAGSLNKLAFMPSSTIQVLGAEKALFRSLKTGARPPKHGLLFQHPLIHSSPRWQRGKI
                     ARAVASKVAIAARIDLYRHGGKDSSVSVRLQKRIEEIQEKYKEPVPERERDRKYREHE
                     HRQRQFSFAKRDRHNKNKNRKKDRKRFTKRRY"
BASE COUNT         1436 a          892 c          737 g         1560 t
ORIGIN      
        1 tcagaattca tttattttct taataaacta cgtcgtagaa ttggtttctt ttgtactgtt
       61 attggcatac acatacttaa tcacatgaac ataaaatgag aacaggatgg agcactctac
      121 aagatagaac tgacattttt ataataataa aattatagca atactcacta ttatcgatta
      181 cgaatagctt aattaaaatt aaatggacaa acattatctt ccaatacgat ttctggtaac
      241 gatagtggtg tgttttttta ccaaggaata ccaattaatg cttagcgctc tccgaagtat
      301 caattatacc gcagaatata atcataatat tatttcccga gtagcctcat tataatgtac
      361 ataaccaacg tatccctggc tctgcctatc tttctaggta gtcttagata atttgtctga
      421 tttaattagt gtcacaagac gtaatattac aaccaactac tactttccaa gaacatctaa
      481 tatatcgccc atcctagcat ttgttttgaa tgccgaagga ttaaaacttg ttttggatgc
      541 tctatagcca gaggatgtca atttttctat aacagtttgt aatgaataag gatttatcct
      601 cagcctcgat gcgatctcgt ctcctcggaa gtaaaaagga atatcatcta gttcgtccat
      661 acagatcgac aatagcttct ggcaacgatc cttcatattt ttgccttgaa taccattgtt
      721 aatccgttca tgactgacca atctaccgat gagattttta tcaaataact tatttatcca
      781 caattggccg gcgacactaa aactatcacc gcagatatcg caaacttccg acatactgta
      841 tctttccaca acatttctat ttccacatct aaaacagtgt cgcaagtatc ctatgttgtc
      901 atatacctta tttgccttac tgctacttac aaagacttta acatagatcc tcaaataatg
      961 taaattagca tgaacaaaga ttggctcaat tgcaagatcc aatctcgccg cggttaatgc
     1021 gattaaagag atcactagac gaagagctat ttcattagta taattcgtgt tgagagatct
     1081 tccataatat ctgcgacaac aaataactgg atagacacca cataatactg ttgtgtctgt
     1141 tgcagttata gaaatcaatc ctccatcaag gatcgacctt agtacgcagt caacgaagtg
     1201 tgcgggggtt ccgaaaggat ctagatcaac tatcgtaaat ctttctgcat tttttgttga
     1261 atgttgtgtt aaaaatttac aaacttcatt gatagagtaa taacattttt cttcaacccc
     1321 atttaactct gcggctattt tcgctgcctc tatcgctaga atattaacat cgttaagata
     1381 gatattttct atttcgggta cttctacggc caccctcaat gctcttgctc ctataccact
     1441 gaaggcatcg gcaaatgatt tattgtgttg ttaacattct gaaatgaagg ttctatatat
     1501 tgatatggat atatctctgt tcaatttagc agctggatta aaaaaagcag gtgtctttgg
     1561 tggaaccttc tttgtcaacg atgcagcagg aactaataat ctagtatttc cctcaatact
     1621 ttccataaag tctttactaa tcatataata aacgattctt tagcatatac aaaatagatg
     1681 ggataataag aattatcatt attttatcgt aaacataaaa gatatagatt acaaataagt
     1741 ataacagtaa aaggatcaat attattgcag gagtgtaaag atattctaat aggaggtgtt
     1801 gacgaagcag gacgtggatc tatcattggt ccattgataa tagcaggcat agccatcaaa
     1861 catttaaagt tatctgaatt atctaaaatt ggtgttaaag attcgaaaaa actaacaaag
     1921 aaattacgtg caaatatgtt ctcaagaata gtagatttag cagattctct ttgtatatat
     1981 aaaattgagc ctgatgaagt agatgataat gtttttctga ataaacttaa caagttggag
     2041 gcagaagcaa tggctgtagt tattaataat cttcatgtcg atgaagtcta tattgattgc
     2101 tgcgatgtta atcaggaacg atacaaagaa tatgtaaaat gtcatcttgt gtcatgcaat
     2161 acaaaactgt attctatgca tcatgcggat caattgaata tagtagtatc cgcagcatca
     2221 attattgcta aaatagtcag agacaatgag atccaggcaa ttagaagaat gcatcatagt
     2281 ataggaagtg gctatccctc agatgaaaaa acaatgtatt ttattcgtga atgggtacaa
     2341 aaatataaaa atgctccctg gtttgcaaga aaatcttgga gaccactaag gacgatactt
     2401 tatgaaaatc gacaagtaaa attaacttac tttggataat aaactgcata caccaacgca
     2461 tgatccttat caaagggttt tagatctatt atctgttcaa tatgaaatcc tctcttttct
     2521 attttttttg cttcttgttc tataaccgat ttaggatcca tcgttacgtc gatgctcctt
     2581 gttttgatca ctatcagcat cacgcctttt ggctttagat atataagaca attttctacg
     2641 gcaatctcag tttgatcggg ctgtgctatg tcagagtata ccacatctac cttgccaaaa
     2701 actgaaaaat atgattgagg ttttcttgcg tcttctataa taggaataat atttctccgt
     2761 tttgaggcca cattttcaat gagctctctc gccactctaa cagcaggttc aactgcaaaa
     2821 acgatccctt tgagtcctac aatatctgag acatgactaa cagtagtacc cgtggaagcg
     2881 cccaagtaca atacctttgt tccattcatt ataggcaatt cctttaatcc tttttttaaa
     2941 gctccagcaa gcttgcttct aaagggatcc catattcgat attcatcccc attatatttg
     3001 actaattttt cgccatagac gttgttgcct ttaataagat ttaatgtaga tatctgcttc
     3061 tctccagcaa ctttgatcca ttctattgca gaaatgtgtg aatcgtcttg aacaacgaaa
     3121 acttcatcat tattatcggt catgattata atggtcttta atcgttatat tacttgtacc
     3181 ctctggcatc cgaatttact aatataaaaa aattagcaaa cagactggaa tctctctgct
     3241 gataactagt ctaatatcgt cgttttgtaa atctctttcg atcttttttt ctatttttgt
     3301 ttttattatg cctatctctt ttagcaaaag aaaactgacg ctgtcgatgt tcatgttctc
     3361 tatattttct atctctttcc ctctccggta caggttcctt atacttttct tgaatctctt
     3421 caatacgctt ttgtaaacga acagaaactg atgaatcttt tccaccatga cgatatagat
     3481 ctatccttgc agctattgcc actttagagg ctacagctct tgctatctta ccacgctgcc
     3541 aacgtggcga agagtgaatc aaagggtgtt ggaataataa cccatgcttt ggaggccgtg
     3601 caccagtttt caatgaccgg aacagcgcct tttcagcacc taagacttga attgtactgg
     3661 aaggcataaa tgccaacttg tttaaacttc ctgcctttgc aataatccga gcacccacgg
     3721 ttgccgtaag caattgctta acatttgggg caacattatc cattgacacc tcaatatgat
     3781 ccgataatat cctacgcagt tctgattgag aaataacttg ctcggcaagg ttcttcacaa
     3841 ttgcgagatt ttctggagct atatctccgc ccttacttcg tttagcagca tccattatta
     3901 tctcactctt tctattttgt ataccagcct tctctaaaat ctcctcagtt agatttgccc
     3961 gtacaccgct cctgcttaca atttcagcat aggctgtaag gctctggatt aaattgtcta
     4021 attctggaaa atgtagccca taccattcac gcattctggc accaatagta ttaattattt
     4081 tgtccaattc atctaatgca ttaatagatt gtatgatgtg aagatcaagt ctttcggatg
     4141 tttcttttac cttacttgat gataattcaa tagcaaaatt tctgagtaat tgcattgcct
     4201 gtgtttcact gtctgcaaat tttgaagata ctataagcag aggtttagtg ttctgaattt
     4261 cctcttgctt ctcttgtgac atcgtatgac tattcaatcc tgcctgtctg aaatgaaaag
     4321 ctagagtagg ctcgttaact aatatatcat cataagaact caatttatca ataagctgca
     4381 ctatttcagg aagtttgctt ccactcttca ccaatcgaaa ggaatctaca ggattactaa
     4441 acctaactga atttattaga ttattgttac cgtcaaatac tgctaatcct aattccgtta
     4501 aaacaacaaa acaatattta ggcattatcc aattgtttct tagatatggc cattaaaaaa
     4561 gataccatta attcactatc tttaatattg tattttcatt ggggggtatt tatgatatat
     4621 tttct
//
LOCUS       DATABJ010000194         4023 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_802547, whole genome shotgun sequence.
ACCESSION   DATABJ010000194 DATABJ010000000
VERSION     DATABJ010000194.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4023
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_802547"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            256..1173
                     /locus_tag="VHF44_03195"
     CDS             256..1173
                     /locus_tag="VHF44_03195"
                     /inference="COORDINATES: protein motif:HMM:NF013226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UbiA family prenyltransferase"
                     /protein_id="HEX2124589.1"
                     /translation="MFRQYTSLVRLPNLFSAASNILPGYCIIVATIPSSFSNTNVLHL
                     AGLMVTSSLLYMAGIVFNDYFDIEIDKKERPTRPLPSGNVSKRKALTIAISSIIAANI
                     ISLVISWMSFVFAVILTAIIIAYDSRLKHKTITGPISMSFARFVNVILGASPAFPVLI
                     LSRESITMLSFIATMLFLYILSISILSKKEVRSNGTRLNIIFPFAIVFVVITSIAIIG
                     LIGIFQTVSFVNLALFSVVMIITFLPILRGQRSLTPVDIRNTIRNMIISIIILDSVFV
                     SGVIGLQYGLATLLLIIPSILLARKFYTT"
     gene            1471..2280
                     /locus_tag="VHF44_03200"
     CDS             1471..2280
                     /locus_tag="VHF44_03200"
                     /inference="COORDINATES: protein motif:HMM:NF014025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarC family protein"
                     /protein_id="HEX2124590.1"
                     /translation="MISVIEIILLFNIAIPITQYDNIILDEYQSNSSNISINRNITQQ
                     DLSSQDEKSPVQFINVISNTLQRFFVPSNVFGDIIKYTIALFVVIDPIGTVPLFIALT
                     ENMQKRERKAVSKIAVITAGVLLIVFAVAGTQILSIFGISISSFLIAGGVLLFIVSIE
                     LLTYGAWRFGGTVPGESGVVPLAFPLLAGPGAITSVIISFQAAGLIVTILSIAIVISV
                     TYIILLLVNPIYRILGRRGSMIITRVFAVLVAAIAVQYIVEGATQIYLTIV"
     gene            2721..>4023
                     /locus_tag="VHF44_03205"
     CDS             2721..>4023
                     /locus_tag="VHF44_03205"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124591.1"
                     /translation="MTRDKNDEKDFYESLEEQIRRIFLSYNSKLKLFKVIFSLLIVLG
                     SFFFFTTLLPYFYIHIEKESISKQQNDILYEINQLNNKIKQVKNGIYILGESNNIFEA
                     LHDQIIRGPEDLRAFAVNLWLPNSSQTATQDTVDKGFQNCSMMPAVTYEWLDCNVRTK
                     IPSQLDGYKQLLYHNITVPVLMVGEELLESKDKLALKEELDDIQQSLVNKLDNQKKEM
                     KIYPQILTLTMSGNTEVNVIFNEMFLDSWNEYEQIIGNQNNRLKDLLSKIQSNLDRKG
                     GDLLSDLEKEKKRLQKTSDELESQIDQIDIRFKQPISPFQNVLLIEIIPLYPMSLALG
                     FLVSISILRDVYQLRGALYRLYKKRYSESDMLVNEHLVVNAPLWIDPLKPTQNHIARF
                     FVLVIPFLFFLITVIMLVYIWFFIHDTLNLFSDVTYFSRIMY"
BASE COUNT         1298 a          643 c          675 g         1407 t
ORIGIN      
        1 aagaaaaatt cgtcaattag tcaaggttct gatgtcgtta gaaattggta tatagaccgt
       61 tctttcagac cattaccacc gttggccaat gaacgttaag tgttttggcc aatataagaa
      121 atttgaagtt atctgaaaga gcatttctta ttttatcctt ctatcaatta ttctattctg
      181 cgagaaaaga caacaaatat gtctgagagt agtttataaa aagatgacat ctatttagat
      241 ggcggagcca gttttgtgtt tagacaatat acaagtttag ttcgtttacc caatctgttt
      301 agtgctgctt ctaatatttt gcctggctat tgtataatag ttgctactat cccttcttct
      361 ttcagcaata caaatgtctt gcacttggca ggtctaatgg ttacatcttc acttctttat
      421 atggcaggaa tagtctttaa cgactatttt gatattgaaa tagacaaaaa agagcgtcct
      481 actagacctt taccctctgg aaacgtatca aaacgaaaag cactaactat tgctatttca
      541 tcgattatag ctgctaacat catttccctt gttattagtt ggatgagctt tgtatttgct
      601 gttatactaa ctgccatcat tattgcgtat gattctcgtt taaaacacaa gaccattact
      661 ggtccaatta gtatgagttt tgcaagattt gttaatgtga tattgggagc tagtcctgca
      721 ttccctgtgc ttattctttc tagagaatcg attacaatgt tatcatttat tgctactatg
      781 ttgtttctat atattttatc tataagtatc cttagtaaaa aagaggtaag aagtaatgga
      841 acaagactta atattatttt tccatttgca attgtatttg ttgttataac gtcaatagca
      901 attataggtc ttattggaat atttcaaacc gtatcatttg ttaatttagc cttgttctct
      961 gttgttatga ttattacgtt cttaccaata ctaagaggtc aacgtagtct tactccagtt
     1021 gacattcgaa atactatcag aaatatgata atatctataa taatacttga ttctgtattc
     1081 gtaagtggcg taattggatt gcagtatggg ttggcaactc ttcttcttat aattccttca
     1141 attcttctag caagaaaatt ttacacgacc tagaatagcc acagatcttt ttttgtcaca
     1201 tcagataaag tatatttata gatcaatcta ttggctatta ttaattcgat agatgagagc
     1261 atatagtaac ctttcattgg agatggctaa tatagataga tttaacaata gaaattcaag
     1321 cgtctttaaa tggatttcta gccccatttt acattagata tcaaaaggtg cagtaatgta
     1381 aagtcagaca tataaatatc atccacacct aacagaacgc tttgatttta tgatggtttt
     1441 taacaaggta aatagaattt aacccaacaa atgatatctg taatagagat aatcttattg
     1501 ttcaacatag caataccaat aacacaatac gacaatataa tattagatga atatcaatct
     1561 aatagtagta atatcagcat aaatagaaac attactcaac aagacctttc ttcacaggat
     1621 gagaagtcac cagttcaatt cattaatgtc atttcgaata cactacaaag attttttgtg
     1681 ccttcaaatg tatttggaga tatcattaaa tacactattg ctctttttgt tgtaattgac
     1741 cctattggaa ctgttcctct ttttattgct ctaactgaaa atatgcaaaa aagagagaga
     1801 aaagcggttt caaagatagc cgttattact gcaggtgtat tgttaatcgt atttgcagta
     1861 gctggtacgc aaattcttag tatttttggt atctctatat ccagttttct gattgcaggt
     1921 ggagtgctat tgtttatcgt atcaatagaa ttactgactt atggcgcatg gagatttggt
     1981 ggtacagtac caggcgagtc aggagtagtc ccacttgcat ttccattact tgcaggacct
     2041 ggagccatta cttcggtaat aatttctttc caagctgctg gattaatcgt aacaatattg
     2101 tccattgcaa ttgtaattag tgtaacgtat atcatcttac tattagtaaa tcctatttac
     2161 agaatacttg gaagacgtgg ttctatgata attacaagag tatttgcagt tttggtagca
     2221 gcaattgcag tacaatacat tgtcgaagga gctacgcaga tctatctgac aattgtatga
     2281 agcataatgt attaactatc aactatcaat atgttaattg ctcatggata attgttccca
     2341 ggatatttgt atacaatttt aattgcttta gttgcccatg tctgaaatag aactaatatt
     2401 gtcaaaatct ttcaatttcg agcaaacttt cctccatgga ttgatgattt attttcctga
     2461 tagttaatac cttgggtgga attgtttcac agatacctac tgccatacag agagatagtt
     2521 tattataata ataataatta tggattcatc actttgtttt tcgactttca attctgttat
     2581 ctcttttaag ctgaatgtat ttgacgtaaa taatcattgt ctgtttgcaa ttgaacatat
     2641 aagtgtttga ataactcttt aatatggtac ctcaggctaa ttgctagtta tttagatgct
     2701 ggtggtacat aggaaagact atgacgagag acaaaaatga tgaaaaagat ttttacgaat
     2761 cgttagaaga gcaaattagg agaatttttc tttcttacaa cagtaaactt aagctgttta
     2821 aggttatctt cagtttatta atagtattag gttcattttt tttctttact actttgttac
     2881 catattttta tattcatatt gagaaggaaa gcatctctaa acaacaaaat gacattttat
     2941 acgaaattaa tcaactaaat aacaaaatca agcaagtaaa aaatggcatt tatatcttag
     3001 gagaatctaa caatatattc gaagctctcc atgatcaaat aatacgtggt cctgaggacc
     3061 tgcgtgcctt tgcagttaat ctttggctac ctaattcttc tcagactgca acacaagata
     3121 cggttgataa aggctttcaa aattgcagca tgatgcctgc agtaacatat gaatggctcg
     3181 attgtaatgt aagaacgaaa attccaagtc aattagacgg atacaagcaa cttttgtatc
     3241 acaatattac tgtacccgtt ctcatggttg gggaagaatt attagaaagc aaagacaagc
     3301 ttgctttaaa agaagaactt gacgacatac agcaatcatt ggtaaataag ttggataatc
     3361 aaaagaaaga gatgaaaata tatccgcaga tccttacctt aactatgtct ggaaacactg
     3421 aggttaacgt tatatttaat gaaatgtttt tagatagttg gaatgagtat gagcagataa
     3481 ttggaaatca aaacaacagg ctcaaagatc ttctctcaaa gatccaatct aatttagata
     3541 gaaaaggagg agacctcctt tcagatttag agaaggagaa aaagagattg cagaaaactt
     3601 cagatgagct ggagagtcag atagatcaga ttgacattcg atttaagcag ccaatctctc
     3661 cttttcaaaa tgttctcctt attgagataa taccacttta tcctatgtca cttgcattgg
     3721 gttttttggt atctatctct atccttcgtg atgtatatca actccgtgga gcattatacc
     3781 gattatacaa gaaaagatat tccgagagcg atatgctagt caatgagcat ctagttgtca
     3841 atgcaccttt atggattgat cctttaaagc caacacaaaa ccacatagca cgtttctttg
     3901 tacttgtaat accttttttg ttttttttga ttaccgtgat tatgctggtc tatatctggt
     3961 ttttcataca tgataccttg aatctctttt cagatgtgac ctattttagt agaataatgt
     4021 atg
//
LOCUS       DATABJ010000195         4232 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_803179, whole genome shotgun sequence.
ACCESSION   DATABJ010000195 DATABJ010000000
VERSION     DATABJ010000195.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4232)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4232)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4232
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_803179"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(231..2351)
                     /locus_tag="VHF44_03210"
     CDS             complement(231..2351)
                     /locus_tag="VHF44_03210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate--CoA ligase family protein"
                     /protein_id="HEX2124592.1"
                     /translation="MYDKSKVQGIFDNIISHKDKVITEEAAKEILSEYEIKVPRYALV
                     TDVDESIKKAKEIGFPLVAKIVSPQILHKTDVGGIRVGLSSEEEVRQTFTDLYTRLSK
                     QYEVKGVLLENKVPQGIELIVGLQNDSQFGPVIMVGLGGIYTEIFKDVVFRILPITNA
                     EATAMIEDLRGKQILKGFRGADPINIEMLSDALVKIGKLGTDMAAYYESIDFNPVIAY
                     PNDYYVVDAKIILREKPNLEAISKSLPDSSYMDLFFNARSVALIGASPETGKVGNSVF
                     ESLVKHEYRGKVFPVNAKGYPEIMGIKAYRSLDEINEPIDVVVVTVDLKYVPDLLRSC
                     GKKGIHNMVIISGGGKELGGERADIEQQIKELSSQLKVRIIGPNCIGIFNGVNRLDCA
                     FQGHQRMLRPKNGEVAFLSQSGTVGIAFMETSDAFGMSKMISYGNRSDVDEADMIWYL
                     SEDPQTNVIGLYVEGLGDGRKFINTARKVIKEKKKPIVVFKNGRSDRGAKQAASHTGS
                     LGGSYNIVKGAFDQIGIISVDSYEELTGSLKALTWQPVPKGNRVAMVTNGAGPIIAAI
                     DHFERLGLQLAQISEKTIRSFKDHYPATYVIGNPCDITGSANSDDYKYAIQAFIDDEN
                     VDIIMPWFVFQDDPLEETIVDVLAAFQKQKRKPILVGAMGGPFTQQICKRLEDANVPT
                     YNSVISWVTAAGSLAKWSKVSGQA"
     gene            complement(2897..3703)
                     /locus_tag="VHF44_03215"
     CDS             complement(2897..3703)
                     /locus_tag="VHF44_03215"
                     /inference="COORDINATES: protein motif:HMM:NF024660.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PHP-associated domain-containing protein"
                     /protein_id="HEX2124593.1"
                     /translation="MKKGIEVLFVTNHNTLDGYHQILEYQQNHEKYKNILIYPAEEIT
                     IDNQGHVLAYGLTSEVKAGMTLEETLDEIKRQGAVSCAAHPFAVTNGIREMASLCDLI
                     ESFNSNNIDHFSNIVAESFAKHKNKPSIAGSDSHIAQTIGRCINSVESEKDLDNILQS
                     MRQGKLKIIKANYTSKEEVYKHAYYILSSSKELILGYTLKHHPNAHWAAKWALNSYTM
                     NPERRFWRALGAFTLYLTKRASEKVNVKGHNPQVFEKRSWRTLIYMSLVP"
     gene            complement(4016..>4232)
                     /locus_tag="VHF44_03220"
     CDS             complement(4016..>4232)
                     /locus_tag="VHF44_03220"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124594.1"
                     /translation="QLVRIPKRLVRYNLKSEYHIITNQYASLENKSVLAAKSAYNKKR
                     QYACEKCGKVFNAWKNLHVHKVENHSY"
BASE COUNT         1201 a          864 c          698 g         1469 t
ORIGIN      
        1 agcagccacc tccagataca taaactctaa gaagtagatt gtctttgcct tcttgtttca
       61 taaattcaac aactttctct gctgcctttg gcgtaatagt tacaatttga ctttgttgtg
      121 ctgtttccat tgctatattt acatttaact aaaaagcata ataagttttt ccccagaact
      181 aattaaaaga taatataaaa acattaatca atttatgatt gagagattgt ttatgcttgc
      241 ccactaacct ttgaccattt tgctagactc cctgctgcag taacccaact aattacagag
      301 ttataggtag ggacgttggc atcttctagt cgcttgcata tctgttgagt gaaaggtcct
      361 cccattgcgc ctaccagtat aggttttctc ttttgctttt ggaatgctgc gagaacatct
      421 actatagttt cttctagggg atcgtcttga aaaacaaacc atggcataat aatatctaca
      481 ttctcatcat ctatgaaggc ctgaatggca tatttataat cgtcagaatt tgcagaacct
      541 gtaatatcgc acggattacc aatcacatat gttgccggat aatgatcctt aaaggatctt
      601 attgtctttt cactgatttg tgcaagctgc aatccaagtc tttcaaaatg gtcaatagct
      661 gctataatag gcccagcgcc atttgtcacc attgctactc tattaccttt cggaacaggc
      721 tgccatgtta gagctttaag agaaccagta agttcttcgt aactatcgac agaaataata
      781 cctatttggt caaaagcgcc cttgacgata ttatatgaac caccgagtga acctgtatgt
      841 gacgccgctt gtttagcgcc tctatccgac ctgccgttct taaatacgac aataggtttc
      901 ttcttttctt ttattacttt cctcgcggtg ttgatgaatt tacgaccatc tccgagcccc
      961 tcgacataca accctattac atttgtttga ggatcttctg aaaggtacca aatcatatct
     1021 gcttcatcta catcggatct attcccataa gagatcattt tactcatgcc aaacgcatcg
     1081 gaagtttcca tgaaggcaat accgacagtc ccgctctgcg aaaggaaagc aacctcgcca
     1141 ttcttcggtc ttagcattct ttggtggcct tggaaagcac agtccaaacg gtttacaccg
     1201 ttaaatatgc ctatacaatt aggcccaata atcctaactt ttaattggct tgataattcc
     1261 tttatttgct gttcaatatc tgcacgttct ccgcctagct cttttcctcc accggaaatg
     1321 atcaccatgt tatgaatacc tttttttccg caactcctaa gaagatctgg aacatatttg
     1381 agatcaactg taacaacaac aacatctatt ggttcgttta tctcgtctag acttctataa
     1441 gctttaatac ccattatttc tggatatcct ttagcattta ctggaaatac tttacctcta
     1501 tattcatgtt taactaagct ttcaaagaca gaatttccca ccttccctgt ttctggagaa
     1561 gcaccaatta atgccacaga tcgtgcgttg aagaatagat ccatataact tgaatcggga
     1621 agggattttg aaattgcttc aaggtttggc ttttctctta ggattatctt tgcgtcaacc
     1681 acataatagt cgttaggata ggctatgaca ggattgaaat ctatactttc atagtaggct
     1741 gccatgtctg ttccaagttt tccgatcttt acaagtgcgt cactgagcat ttctatgttt
     1801 atagggtcgg ctcctctgaa acccttcaat atttgctttc ctcttagatc ttcaatcata
     1861 gcagtcgctt cagcatttgt tataggaaga atcctaaata ctacgtcttt gaaaatttct
     1921 gtgtaaatac ccccgagacc aaccataatg actggtccaa actgagaatc attttgcaaa
     1981 cctacaataa gttcgatacc ctgtggaact ttattttcaa ggagtacacc tttaacttca
     2041 tactgctttg atagcctggt atataagtca gtgaaagttt gacgaacctc ttcttctgag
     2101 ctcagaccaa ctcgaattcc acctacgtca gttttgtgca aaatttgagg agaaactatt
     2161 tttgccacta acgggaatcc tatttctttt gcctttttaa tcgattcatc gacatcggta
     2221 actaaggcat atcttgggac ctttatttcg tattcagaca aaatctcttt ggccgcctct
     2281 tcagttatta ctttatcttt atgtgaaata atattgtcaa agatgccttg aactttgctc
     2341 ttatcataca ttaaattatc taaagaaatt ctggttcagc ttctaattaa ctttgcgcgg
     2401 ctagcctttt ctgtccagac tagatttttg aattattata accatcgttt gttgcagcta
     2461 gctgtcagac ttcacatgcc cccaatcacc tattgcatat aatattcctt cacagaattg
     2521 gttgtcaata cttctccttc agatggcttc ccttttcttc taccaggttt aagaccaatt
     2581 tgacatcatc cactcttgtc tacaaaaaat gttgagtaaa ccgaatttta tcttatccta
     2641 tagatatcat tatcgcttta gcaagcaaaa tccctatatg ttattttttt attcaaattt
     2701 ttattgcaaa agctgactac ttgttattat gttattatta aagtatcaat tagcatataa
     2761 tatgagtata tttgacccct cgatctatac cgcggcattc ccttacttgt ttatagcaag
     2821 ttttcctata tttgggataa tattagtaac aaagtggctt attgatgaca gaaggaacaa
     2881 aaaacgcgaa attcagttaa ggaacaaggc tcatgtaaat taatgttctc caagatcttt
     2941 tttcaaatac ttggggatta tgtcctttaa cattgacttt ttcagaagct cgttttgtca
     3001 ggtataatgt aaaggcgccc aacgccctcc agaatcgtct ctctggattc atagtataag
     3061 aattcaaagc ccacttagca gcccaatgag cattgggatg gtgtttcaat gtatagccta
     3121 aaatcaactc ttttgagcta gacagaatat aatatgcatg cttgtagact tcctcttttg
     3181 aggtataatt tgctttgatg atttttaatt taccctgcct catggattgc aaaatattat
     3241 caagatcttt ctctgattcc accgaattta tacatctgcc gatagtttga gcaatatgtg
     3301 aatcacttcc tgctattgat ggtttgttct tatgctttgc gaaactctct gcaacaatat
     3361 tagaaaaatg atctatgttg ttactgttaa aggattcgat aagatcgcac agggatgcca
     3421 tttcacgaat accgttggtt actgcgaagg gatgagcagc gcaggaaaca gcaccttgtc
     3481 gtttgatttc atctaatgtt tcttcaagag tcattccagc ttttacttcg ctagtcagac
     3541 cgtatgctaa aacatgtcct tggttatcta ttgtaatttc ttctgccgga taaatcaaga
     3601 tattcttata cttttcgtgg ttttgctggt attcgagtat ctgatgatag ccatctagag
     3661 tattatgatt tgtaacaaaa aggacttcta tgcctttctt caaagctata tctaattgct
     3721 cttctatact tacaccacag tcgaagggaa ctcgtgcaga tccattacga tagttagaaa
     3781 aagtattatg acaatgtagc tcgagtttta ggaaatcagt cgtggctttg taccctatca
     3841 ggattataga gtaaccaaat atatactata ttaaggcgat aaacggatat gcctcataat
     3901 ttcaaacgtg ttctataaac cgactctgtt tatagctaaa taatgatatc ccaagcaaat
     3961 attgttgaat atttcttata gagaattata aatattattg ttaatataga tgttgtcagt
     4021 aagaatgatt ttcaacttta tgtacatgta aatttttcca tgcattaaat actttgccgc
     4081 acttttcgca agcgtattgt cgtttcttat tataggcaga ttttgctgcc agcacagatt
     4141 tattttccag acttgcatat tggtttgtaa ttatatggta ttcgctcttt aagttgtatc
     4201 gtactagtcg ctttggaatt ctaaccaatt ga
//
LOCUS       DATABJ010000196         3477 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1026450, whole genome shotgun sequence.
ACCESSION   DATABJ010000196 DATABJ010000000
VERSION     DATABJ010000196.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3477)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3477)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3477
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1026450"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(962..1936)
                     /locus_tag="VHF44_03225"
     CDS             complement(962..1936)
                     /locus_tag="VHF44_03225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="radical SAM protein"
                     /protein_id="HEX2124595.1"
                     /translation="MVDLIYGRGITDLIHEMPFYVNIFKNYISIKLFHSKPAMYGSVD
                     IINVCNLHCTHCYWWLNRKNENKDLTAEQWREIIKKTFKKQHIFVVTLVGGEPTMRPD
                     VIQVFCEEMPKRVCVVTNGTYPLKRFENLYFYWVSLDGTEKVHDSIRGEGSYAKTKQN
                     ILNYIIGQPSRKGKPSWKDIWLTMTINSLNYNTIEDLIEEWIGKVNKIGFQFHTPFIK
                     GDPLWMPFGEKRNEVVDKLIRLRKKYPNFIINGEKQLSLMKGNWGGIGTTPVQCPSWA
                     ILSLDHMGKVKQPCCIGSSDSKALKPICEECGLGCYSVLVAQGITGNS"
     gene            2364..2750
                     /locus_tag="VHF44_03230"
     CDS             2364..2750
                     /locus_tag="VHF44_03230"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124596.1"
                     /translation="MIYGADVLTASINSPAGLRGKGFLPFEEEIRGGAFGGVAVIMSI
                     AGFIIGRKEPSKAISSLLFINGGLIIAGIIITIALASLSSEDTGGMERTVGFTILLGI
                     ILIGLGVWKAMDDKKIVSSKKESSSV"
     gene            2762..2890
                     /locus_tag="VHF44_03235"
     CDS             2762..2890
                     /locus_tag="VHF44_03235"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124597.1"
                     /translation="MDQTIQLIYSSSTGSKSGATPATTAISDFGSLLLPLLSHGMF"
BASE COUNT         1128 a          594 c          581 g         1174 t
ORIGIN      
        1 gtgcgccatg ataaaacttg tttcctccta caacaagaac aataccatta tcaccttttt
       61 tagatgagga taggcgtgga acaatgagtt cttttacaag tttactattt accgtgacta
      121 cgtctggcaa ttcacttcat aagatcttga aaagacgaat aaactttatc aatccggcga
      181 taagatagta gcaatacata tatagataat gcaatcttgc gagagttttt ctaatagata
      241 attttcattc gtaggcagag agagagtcta tgcctttggc ttgtttcgtt tgcgtctctc
      301 aacttttgca tactttttac ttcctgatct ctgtgtactg taagcatgtg ttttattccc
      361 cttgcgatga gccatcatta gacaagcaaa gtaagagaaa tatatatgct attggattat
      421 cacttagttt agtaacttta tttgttttag atcataaaat ctcggaaaga catttactaa
      481 atttaatttt atattgtgat agataacaat aaatttacta aagataatat agaatgtgga
      541 taaatcagag aactgtgtcc aaaacaagca tgacttgtgt gaaggagaaa taatagagat
      601 tattactggt tcaaaaacaa caaaaatttg caaatgtcaa tgtcatgaca atatgtacca
      661 attaatccga agaatgcagg ctgtaaacag tcagtgataa ttcatataat ttgctaatat
      721 gatttagatg tttttcaagc tgaccatccc tgacctgtgt gtatatttat aggtaatgca
      781 aataatagaa acgtaattgc gtcagatatc taaaataaat ctctgcttga ggcttttcct
      841 ctattgctaa taacagtatc gaggatgcat aattataaaa attcattaca atggaatcta
      901 atttttaatt ttatcttttc acgtaaatgt ataattgatg aaaatataat gcattctaga
      961 ctcaggaatt cccagtaatt ccttgtgcaa caagcacaga atagcaacca agaccacatt
     1021 cttcacaaat aggctttaat gctttgctat cagaacttcc tatacaacaa ggttgcttta
     1081 cttttcccat atgatctaat gagagtatag cccatgatgg acactgaaca ggtgtagtgc
     1141 caattcctcc ccaattacct ttcatcaatg ataattgctt ttctccatta atgataaagt
     1201 taggatactt ctttcttaat ctaataagtt tgtcaacaac ttcatttctc ttctctccaa
     1261 atggcatcca aagtggatct cctttaataa atggtgtatg aaattgaaag ccaattttat
     1321 tgacttttcc tatccattct tctattaaat cttcaattgt attataattt aaggaattaa
     1381 tagtcatggt gagccagata tctttccaag atggcttacc tttgcgactt ggctgtccta
     1441 taatatagtt gagaatattt tgttttgttt ttgcatatga gccttctcct ctaatgctat
     1501 catgtacctt ctctgttcca tctaatgata cccagtaaaa gtatagattt tcaaatcgct
     1561 ttaaaggata agttccattt gtaacaacac atactctctt gggcatctcc tcacagaaaa
     1621 cctgaattac gtcaggacgc attgttggct cgccacccac caaagttaca acaaagatat
     1681 gttgtttttt aaaagtcttt ttgattattt ctctccattg ttctgcagtt aaatctttat
     1741 tttcattctt tctattcaac caccagtaac agtgagtgca atgtaaatta cagacattga
     1801 taatatcgac tgagccatac attgctggtt tggaatggaa aagctttatg ctaatataat
     1861 ttttgaatat gttaacataa aatggcatct catgaataag atcagttatg ccgcgaccgt
     1921 agattagatc taccataagt gatactctag taaagcaatg gttataaata aagttgtata
     1981 ttagaggttg ttacttattt cttttttaaa ccgttttact acacagcatt ctggagattt
     2041 acatccatag ttacaattcc tgtaacctgc tttaaaagca gcatatgctt aagaccattt
     2101 gatattagca gatattatta tcatcaccag aaaataaata atctaactat tctaaaatgt
     2161 taagaaatct ggtatgatgg gattaatact ttctaacttt cattgaatag aagagtttaa
     2221 caaggcaagg cattatagca tatagaggat ttcatcgcat ctacatgctt attaagtaca
     2281 tatattaaac tgattgacaa acttccacta tgaataaagt agcaatttct atgattttat
     2341 taattgtatc tttaatattg ctggtgattt atggcgcaga tgtattgaca gcttcaatta
     2401 attcgcctgc cggactacgg ggaaaaggtt tcttaccgtt tgaagaagag attcgtggag
     2461 gagcatttgg aggagtagca gtaataatgt ctatagcagg ttttataata ggtagaaaag
     2521 aaccatcaaa ggcgatatcg tcattacttt ttattaatgg aggattgata attgcaggta
     2581 taatcataac tattgctctt gcaagtcttt cttctgaaga taccggaggt atggaacgca
     2641 cagtcggctt cactatacta cttggcatta ttttgattgg acttggagta tggaaagcta
     2701 tggacgataa aaaaatcgtg tcaagtaaaa aagaatcgtc ttcagtttga tgagttgtct
     2761 tttggatcag acaattcagc taatatattc tagctcaact ggctccaagt ctggagctac
     2821 ccctgctacc actgcaatat cagattttgg atcattatta ttgccattgt tgtcgcatgg
     2881 tatgttctag taattgcatg agacacagtt actagaatag gagttgtatc tgttaactct
     2941 acaaactggc ctatcttcaa tgtagacctt caagcggaat tgttacacta cttggcatct
     3001 ggtcgtcacc ataattgttt ctatcaacca tagctgcatt ggatgaaggg catttgtgat
     3061 attgcaaata ttcttgtcac aagaatggct gcaacaaaaa atgttttggt tgttagaatt
     3121 tcttcatcct acaacaagta tagagtatat gcgaattaac tactaagcag ttcttattag
     3181 tattctaata ttttgataac tatagaataa ttattgacct tattgtaaat gtggacatgc
     3241 aactaagaag aaaacaacaa tagtaatctc aggagttata gcaacagtag ctgcacttgc
     3301 tatgattgca tcaatctatc caatagaaaa tcaagtgttt gctcaacagc aggatcaagc
     3361 tatttcattt acagtacaaa ccactagcat gtttgcacag gaccctttac ctagtcatca
     3421 agcacatcaa gctgtaatag cagctccacc aagagaagat ggcaagatat attcagg
//
LOCUS       DATABJ010000197         4016 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1243547, whole genome shotgun sequence.
ACCESSION   DATABJ010000197 DATABJ010000000
VERSION     DATABJ010000197.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4016)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4016)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4016
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1243547"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(406..1236)
                     /locus_tag="VHF44_03240"
     CDS             complement(406..1236)
                     /locus_tag="VHF44_03240"
                     /EC_number="2.8.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016783 - sulfurtransferase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase"
                     /protein_id="HEX2124598.1"
                     /translation="MEKEIYDNNNYSNFQLPIICDADTLQILIREKTVRIVDVRKEQE
                     YQQEHIPTAVSIPLAQLLKKDTPEEVVNLMQNAGISDKMPVVVYDDTFGALAARVAWT
                     FQYVGHTNTALLEMTFSQWKNLGLPVEKKTNNFPWVEHSINVNDEIHADSSYVDAIKE
                     QPNKILIDSRERLNFLTEHIPGAKNIPYTMLGSNGSIFRNAEEIKRFIENRGISTDSE
                     IITYCGSVGTLSGLAYYALKLAGVKNVKLYSKSFREWKFLGKPKEEFKDANYWDLSAE
                     "
     gene            complement(1279..3117)
                     /locus_tag="VHF44_03245"
     CDS             complement(1279..3117)
                     /locus_tag="VHF44_03245"
                     /EC_number="1.8.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0020037 - heme binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_function: GO:0050311 - sulfite reductase (ferredoxin)
                     activity [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nitrite/sulfite reductase"
                     /protein_id="HEX2124599.1"
                     /translation="MKNKTSNDISKQRNIPYSEPNSQWGKEEETEIFAQKVKLYRQGK
                     LSDDDFRRFRLQAGTYSSRLQMNFSMIRIKIPSGEITPEQLEKIASLSEAFSIGSAHV
                     STRQNIQLHWVQLEDVSEVMRGLVEVGLTTREACGNTVRNVMCSHFAGVCSDEAFDAT
                     PYAKAIARFFIRNPMCQNLPRKFKINFACCNKHGLVRVADIGLVSAIKDGVKGFKIYL
                     GGGLGAASFIGHPLEDFTPEDRVLSTCMATIRLFDRHGNRENMARNRMRYLVHEMGWE
                     KFQKMALKERSIVEMTTSLSTAKLFNIREEEARYLSKSMNMASKLPMLNEQVIHQENP
                     AYKRWLHTNVVPQKQEGYFTVFVTLGAGDITANQLRVLARSIREFSAESGARNTPQQN
                     FAIRYVKGSDLANFYNRLASIGLANPGALTIASAVGCSGTTSCNLAITNSHRLAKEVQ
                     RKFLELEFDTDDSLRDSTIKISGCPNSCGQHEIATIGFFGGASRIGSAMAPTYTMLFG
                     GSDGEYGELGKAVMRVPAKRVIDIIRKIIDVYKQERNNNETLNQWINKIVLGEGKGSI
                     KNIEDIKEILLPVTQLAPIEQDPELYRDYGNDVKFSAKTARGECAA"
     gene            complement(3522..3944)
                     /locus_tag="VHF44_03250"
     CDS             complement(3522..3944)
                     /locus_tag="VHF44_03250"
                     /inference="COORDINATES: protein motif:HMM:NF013994.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding domain-containing protein"
                     /protein_id="HEX2124600.1"
                     /translation="MRKAPLTARIELKVESSVSPSESPEKVISAITNVIDKCSPDFRY
                     GSRVIGRASGSESLRTIYEQIRSKASMGVLRRMLLYHKIADTTYFLLNKQAASAGIVV
                     VIEDVKESPLGPISVTIDCEELDALICWLAPADGRKSF"
BASE COUNT         1141 a          808 c          690 g         1377 t
ORIGIN      
        1 acaactcgct gcactttttc cccaatgggc tatacattta gatacattca ctgaaaaatc
       61 ggtcaaatta tgctatagag atatgcacct tataataaat atgttcatta gttattctca
      121 atttcgagaa gatcagaggt agcatatttg aaggtacagt ggtaagtcta tggacatcat
      181 gaagattcat gtcttgtaca gtaatcatat tgatcaagaa ctgctaaata ttcttacatt
      241 atgtcggtca tgctgatagg agaaagcatc tactcatcac atataaatac atataattct
      301 aagggttgat tttagaattg gttgtgacat cttagattca gtacttgatt tgaacaacct
      361 ataatgataa gcattttgag atgaaggttg aataaaggtg aaatattatt ctgctgataa
      421 atcccagtag ttagcatctt tgaattcttc ttttggtttg cctagaaact tccattctct
      481 aaatgatttt gaatataact tgacattctt cacacctgcc aattttagcg cataatatgc
      541 tagcccagat aatgttccaa cacttccaca atatgtgatg atttcggaat cagtggagat
      601 acctctattt tcaataaacc tctttatctc ttcagcattg cgaaaaatgc tgccattgga
      661 accaagcata gtatacggaa tatttttggc gccaggaatg tgttcggtta aaaagtttag
      721 acgttctcta gaatctatga gtatcttgtt aggctgctcc tttatggcat ctacataaga
      781 cgaatcagca tgaatctcat catttacatt tatagagtgc tcaacccatg gaaagttatt
      841 agttttcttt tcaactggca atcctaaatt tttccactgg ctaaatgtca tttcgagcaa
      901 tgcagtattt gtatggccga catattgaaa agtccatgca actcgagctg ccagtgcgcc
      961 aaatgtgtca tcataaacaa caactggcat tttatctgat atcccagcat tctgcatgag
     1021 atttactact tcttctggcg tatctttttt caataactgt gcaagtggaa tggaaactgc
     1081 tgtcggaatg tgttcttgct ggtattcttg ttctttacga acatctacta tgcggactgt
     1141 tttttctcga ataagtattt gtagcgtatc agcatcacaa atgatcggaa gctggaaatt
     1201 actatagttg ttgttatcgt agatctcttt ttccattttt aagtcaaatg tcttgttttg
     1261 gtcctttagc gatagtgttc aagcagcaca ttctccgcga gcagtctttg cagaaaattt
     1321 gacatcattt ccataatctc tgtataattc tggatcttgt tctattggtg ctaattgcgt
     1381 aactggaagc aatatttcct taatatcttc aatatttttt atgctgcctt ttccttctcc
     1441 gagtacaatt ttgttgatcc attgattcaa tgtttcattg ttattgcgtt cctgtttgta
     1501 tacgtctata atcttgcgaa ttatatcgat gacacgtttt gcgggtactc gcattacggc
     1561 cttgcctaat tctccatatt ctccatcact tcccccgaac aacattgtgt atgtcggagc
     1621 cattgccgac ccgattctcg atgctccacc aaagaatcca atcgtcgcaa tttcgtgctg
     1681 cccacaggaa ttaggacaac cactaatctt gattgtggaa tcccttaaac tatcatcagt
     1741 gtcaaattct aattccaaga atttgcgttg tacttctttt gccaatctgt gtgagtttgt
     1801 aattgctaga ttacaggaag tggtcccaga acatccaacg gccgatgcaa tggttaatgc
     1861 tccaggattt gctaatccga ttgatgccag cctgttgtaa aagttggcca aatcactacc
     1921 ctttacataa cgaatagcaa aattttgctg aggtgtgttt ctagcaccac tttcagcaga
     1981 gaattcgcgg atagatcttg ctaatactcg tagttggttt gctgtaatat ctcctgctcc
     2041 taatgttaca aaaactgtga aatagccttc ctgcttttgt ggaacaacgt tagtatgaag
     2101 ccatctttta taagcgggat tttcctgatg aataacctgt tcatttagca ttggtagttt
     2161 tgatgccata ttcattgatt tagataagta tcttgcctct tcttctctaa tattaaatag
     2221 tttggctgta gaaagagatg ttgtcatttc cactatcgag cgctccttaa gggccatctt
     2281 ttggaatttt tcccatccca tttcatgtac tagataacgc attctatttc ttgccatatt
     2341 ttcacgattg ccatgtcgat caaacagtcg gatggtagcc atacatgttg atagcaccct
     2401 atcttctggt gtgaaatcct ctaagggatg gcctataaat gaggcagcgc ccaggccccc
     2461 gccaagataa attttgaatc cttttacacc atctttgatc gcagatacca atccaatgtc
     2521 agcaactctc acaaggccat gtttattgca acaggcaaaa ttaatcttaa acttgcgagg
     2581 aaggttctga cacataggat ttctgataaa gaaccgagca attgctttag catacggagt
     2641 agcatcgaat gcctcatctg aacaaacacc agcgaaatgg ctacacatta cgtttctaac
     2701 agtgttgcca catgcttctc tagttgtaag gcctacttca acaaggcctc tcattacttc
     2761 gctaacatct tctaattgca cccagtgaag ctgaatgttc tgccgtgtag agacatgagc
     2821 tgagccaatt gagaacgctt ctgataggct agctatcttt tcaagctgtt ctggtgtgat
     2881 ttcaccacta ggtattttga ttctgatcat gctaaaattc atctggagtc ttgaactgta
     2941 tgtaccagct tgtagtctaa aacgacgaaa atcgtcatcg gataacttac cttgtctgta
     3001 aagtttaact ttttgagcga aaatttctgt ttcctcctct tttccccatt gtgaattggg
     3061 ttctgagtaa ggaatattcc tctgtttaga aatatcatta ctagtcttat ttttcaatat
     3121 gatctatttc aaacctaaaa ccttatattt tttgtggaag tagggcatat tggtagtaac
     3181 gtacgataat agcggcaaga ataccctatt aagtatcata tcttgtatca agaccatttt
     3241 gtatcaatct tatcattatt tcagatgtgt tcaatcattg aaagaattta atctaacaat
     3301 aaatgtatca agaaattaca aatcaattag aaaagaaaaa tcataattaa atcccatatt
     3361 atattgctgt tgtcaatcat aggcacttgc tcctttgata atatccttac tctttttttg
     3421 ttctgctctt actactacta ccggtattta aagtcaggtt gaaatttgtt tcccagcaac
     3481 ttctccgaca tatccttcat tctcagattt gacagcatag ctcaaaatga ctttctaccg
     3541 tctgcaggag ccagccaaca aataagtgca tctagttcct cacaatctat ggttacactt
     3601 ataggtccta gaggagattc ctttacgtct tcaattacca ctacaatacc tgcactagcc
     3661 gcttgtttat ttagaagaaa ataagtcgta tctgcaattt tatgataaag caacattctt
     3721 ctaagaacac ccattgaagc tttggatcta atctgctcat aaatagtgcg aagtgattcg
     3781 cttccgctgg ctctgccaat aactctgctg ccgtatctaa agtctggaga acatttatca
     3841 ataacattag taatagctga tattactttt tcaggacttt cagatggaga aacagaagat
     3901 tctactttta attcaattcg tgctgtaaga ggcgcttttc tcatttaata ttattacctt
     3961 tatggttaat agtgacatta ctatcacttt tatcaatttc agcgacccac ttttga
//
LOCUS       DATABJ010000198         1753 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1662942, whole genome shotgun sequence.
ACCESSION   DATABJ010000198 DATABJ010000000
VERSION     DATABJ010000198.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1753)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1753)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1753
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1662942"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1690)
                     /locus_tag="VHF44_03255"
     CDS             complement(<1..1690)
                     /locus_tag="VHF44_03255"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose synthase family protein"
                     /protein_id="HEX2124601.1"
                     /translation="MNKKLKPINDNSLPVITIQLPIYNEKYVAVRLIDAVCKIDYPKE
                     KLQIQILDDSDDDTSQMIKLIVGHYKFKGFDIIYFHRNKRSGYKAGALKAGMKIAKGE
                     FIAIFDADFIPPNWFLKKSIGHFSDPKVGLVQCRWGHVNENYSFLTEAQAISLDLHFL
                     IEQKAKSLTHLFMNFNGTAGIWRTSCINDAGGWHTSTIVEDLDLSYRAQLKGWKCLLL
                     EDVIVDAELPVQINAAKRQQFRWAKGSMQVAMKLLIDLTSDRKIPIDTKIQAFIQLTR
                     HIVHPLFLTQFIIFPMLLALDYKLYAISWSPITGILIYILMGPATYLYIIRKIWGDKW
                     KVKARQYFYLIFFATGISVNNTVAIFEALLIGKNEFLRTPKFGVIKKGDNWKNKSYVL
                     PFTKTTLLEIFFGLYGALAIFISIFSGNPIFVPILLIQTIGFIYIAYLSIAHSSFNYN
                     ESNKKLKNVSRQDLFLPNQSSGIVEKTGIELAENLNTKVYIKTIKRTTNVKLIVEKSM
                     KRGYYKLMLFGFLSILAFGAAVAYYGYESTIYPLDKAVGYLSRAEAAQSPEAVAD"
BASE COUNT          561 a          306 c          290 g          596 t
ORIGIN      
        1 aatctgccac cgcttctggt gattgagcag cttctgctct tgataaataa cctactgctt
       61 tgtccaaggg ataaattgtg ctctcatatc cataataggc tactgctgca ccaaaagcta
      121 aaatacttaa aaagccaaac aacatgagtt tataatatcc acgtttcata cttttttcaa
      181 caattagctt aacgtttgtc gttcttttta ttgtttttat atataccttc gtatttaaat
      241 tttcagctag ttctatacct gtcttctcaa caattcctga cgactgattt ggtagaaata
      301 gatcttgccg cgagacattt tttaattttt tatttgattc attataatta aatgaagaat
      361 gagcgatgct cagataagca atataaatga aaccaattgt ttgaattaat aaaataggta
      421 caaatatcgg atttcctgag aatatggaaa taaagattgc aagagcaccg tatagcccaa
      481 aaaatatctc tagtaaagta gttttggtaa aaggtagaac atatgattta tttttccagt
      541 tgtcgccttt tttgataaca ccaaatttag gagtacgtaa gaattcattc tttcctatca
      601 acaatgcttc aaatattgct actgtattgt taacagatat tcctgtggca aaaaaaatta
      661 aataaaaata ttgtctagct tttactttcc atttatctcc ccagattttc cttatgatat
      721 atagatatgt agcagggccc atcaagatat agattagaat accggtaata ggagaccaac
      781 ttatagcata caacttataa tctagtgcaa gcagcattgg aaaaataata aattgagtta
      841 gaaataatgg atgaacaatg tgtctagtga gctgaatgaa tgcttgaatc ttggtatcta
      901 tgggtatctt tctgtctgat gtaagatcta ttagtaattt catagcaacc tgcatagaac
      961 cttttgccca cctaaactgc tgtcgcttag ctgcattgat ctgcactgga agctctgcat
     1021 cgacaatgac atcctcaagt aaaagacatt tccaaccttt aagctgggct ctataactaa
     1081 ggtcaagatc ttctacaata gtacttgtat gccaacctcc agcatcatta atacaagaag
     1141 tcctccatat tcctgcagtt ccattaaagt tcatgaataa atgagtcaaa ctttttgctt
     1201 tttgttcaat caagaagtgt aagtcaagtg aaattgcttg tgcttcagta agaaaagaat
     1261 aattttcgtt aacgtgtccc catctgcatt ggactagccc tactttagga tctgaaaagt
     1321 gacctattga ctttttcaga aaccagttag gaggaatgaa atctgcatcg aaaatagcaa
     1381 taaattctcc tttcgcaatc ttcataccag ctttcaatgc accggctttg tagcctgatc
     1441 tcttgtttct gtggaaatag ataatgtcaa agcctttgaa tttatagtga cccactatta
     1501 acttgatcat ttgggatgta tcatcatcag aatcgtcgag tatctgaatc tgcaactttt
     1561 cttttggata atcgatttta catacagcat caattaagcg tacagctaca tacttctcat
     1621 tatatatagg aagttgaata gttatcacag gtaaagaatt gtcgtttata ggctttagtt
     1681 tcttattcat tgctttttga tgtcttatat tgtgctggga ttggtaagag agatagaaaa
     1741 agttaagggt ata
//
LOCUS       DATABJ010000199         1622 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1898867, whole genome shotgun sequence.
ACCESSION   DATABJ010000199 DATABJ010000000
VERSION     DATABJ010000199.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1622)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1622)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1622
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1898867"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..209
                     /locus_tag="VHF44_03260"
     CDS             <1..209
                     /locus_tag="VHF44_03260"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124602.1"
                     /translation="PSLLATGGDSTCFISTVTYLSVKIVDYNIIILQYFLGISELDQQ
                     ISKSHLYPLYIAYQCWSYVRAEAN"
     gene            complement(230..385)
                     /locus_tag="VHF44_03265"
     CDS             complement(230..385)
                     /locus_tag="VHF44_03265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124603.1"
                     /translation="MGSCNGNRLLAAKRMSEISKKEIRECWVLLDEVVPMSTMERLRY
                     CSLGIMD"
     gene            830..1240
                     /locus_tag="VHF44_03270"
     CDS             830..1240
                     /locus_tag="VHF44_03270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6766 family protein"
                     /protein_id="HEX2124604.1"
                     /translation="MAESYNTKGASNRKLLLTKIQKNKRGFLWVTLGFFVISLAAHWV
                     FAWFTYVQEQQTHNQPIQVGDYFNMTVRDIMENWQSEFLQLMWQVAGLSFLLYAGSPQ
                     SKESSERIEEKIDLMMKKLQERDWEQKEKEQIAR"
BASE COUNT          551 a          286 c          287 g          498 t
ORIGIN      
        1 gaccaagttt gctcgctact ggtggtgatt ccacctgctt tataagcact gtaacatatt
       61 tgagcgttaa gatagtagat tacaatatca ttattttgca atactttctt gggatatcag
      121 aattagacca acaaatctca aaatcgcatt tgtatcccct ttacatagca tatcaatgtt
      181 ggtcttatgt acgagcagaa gcgaattaat ttggctatct tcaatctcgt caatccatta
      241 tcccaagcga acaatatctt agtcgctcca tagtgctcat gggtactact tcatctaata
      301 atacccaaca ttctcggatt tcttttttag aaatttcaga cattcttttt gctgccaaca
      361 atctgttgcc attacaagag cccatcaggc tcacgatcca ttgtttttgc cattgttcgg
      421 tcataacaat gtgatccaca aatctacttt agataaaagt ataaagaata ttgtccactt
      481 tattaaaatg cagcagcctt atttgttcta caataaaaac actgttatta atcataagac
      541 atactatttg gatatctaga ttgttcatgt gactaaaatt tagaagaatt tgctatatgg
      601 gataataggg aagttggaag cccgataaaa agtggaatca aagaagtgag aaaacatgca
      661 cacagccaga acgaatatac gattacattg cgaagagaaa agcacaaaat gctcggggat
      721 taacaaggat tacaatgata ctatctctac cattcatttt gtcactctat tgcctttgat
      781 aaaagatacg atattctctt tatccgataa gttccattaa tcttcgggga tggcggaatc
      841 ttataacacg aagggcgcct ccaataggaa attactgctc accaagatac agaaaaacaa
      901 acgcggtttt ctatgggtta cattaggctt cttcgtcatc agcctagctg cgcattgggt
      961 attcgcatgg tttacatatg tacaggaaca gcagacgcat aatcagccta ttcaagttgg
     1021 agactacttt aacatgacag ttcgagatat aatggaaaat tggcagtcag agtttctgca
     1081 attgatgtgg caggtggcag ggttatcatt cctattgtat gcgggctcac ctcaatcgaa
     1141 ggaatcaagt gaaagaatag aagaaaaaat tgatttaatg atgaagaaac ttcaagaacg
     1201 agactgggag caaaaagaaa aagagcaaat agcaagataa ggatagcagt tattatagcc
     1261 tctgttttga actacaatct tttatttgcc acattttagt tttagataca ttcaagtttt
     1321 ttcataaatt atgagtttat agataataag ccccgtcgta ctattttgtt aattatgcat
     1381 aagacttcaa taatcgataa tatctttttg catgtataga caaactttac aacatttaaa
     1441 agaaaaaagg gtaagaaggt ataaattgat acctttcctt cataatgcgc gtaattgata
     1501 aaaaatatcc cattatttag caaaatggat catttagtgg agccatcgag aaaaacagcc
     1561 actattgctg caatagcaat tacaactatt attgtaatag gtttcttggc aagcagacag
     1621 at
//
LOCUS       DATABJ010000200         7576 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1027732, whole genome shotgun sequence.
ACCESSION   DATABJ010000200 DATABJ010000000
VERSION     DATABJ010000200.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7576)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7576)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7576
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1027732"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..250
                     /locus_tag="VHF44_03275"
     CDS             <1..250
                     /locus_tag="VHF44_03275"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124605.1"
                     /translation="LGIRGFKSHESLRNRVVGARMCVYCTVLAHSKLRTPSNTYCEKE
                     TCAVGQAWQPPHAHKHAHATSILNHSIAKFIYSYSLQL"
     gene            258..1640
                     /gene="glmM"
                     /locus_tag="VHF44_03280"
     CDS             258..1640
                     /gene="glmM"
                     /locus_tag="VHF44_03280"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008966 - phosphoglucosamine mutase
                     activity [Evidence IEA];
                     GO_process: GO:0009103 - lipopolysaccharide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009252 - peptidoglycan biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEX2124606.1"
                     /translation="MQKNNPRLFGTNGVRGVFGKEFTLDLVVDLSYSLATYFGKGPII
                     VGHDGRNSSPILSKIVRSVINSAGIDVGNAGLVPTPCLQYAAKRLGYNGGIMITASHN
                     PPEYNGIKPTADDGVEISREDELKVEDIYYSKNFSKSDSFGRDYTNETIIDSYIEKVL
                     SLVNIEKIRQRNFTVAMDIGNGAQSRVAPFLLNKLGCKVITINGNIDGDFPGRGSEPT
                     PENLKMLSNMVKGLEADFGVAYDGDGDRSLFCDERGTVHWGDMVGAAIVRYLLKTKHR
                     RAEVVCPINTTMALSMVAKEADSKVIHTKVGSVEVSREMLRRKSFIGLEENGGFMYGK
                     LNEVRDGAMTTALVLEMLSLSNDDNNNNQTLSQIISSLPKIFQYKTKFKCPTKQIANN
                     IVNLCLEHGSPKKIETLDGAKIWIDEDTWIMVRPSGTEPLVRMYAESVDSSLLNSKVA
                     EYRRLIESKL"
     gene            1738..2115
                     /gene="rpl7ae"
                     /locus_tag="VHF44_03285"
     CDS             1738..2115
                     /gene="rpl7ae"
                     /locus_tag="VHF44_03285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7Ae"
                     /protein_id="HEX2124607.1"
                     /translation="MSKPYYVKFETPKDLVSAVYEAVRLAKQSGKVRKGTNETTKSIE
                     RGTSRLTVIAEDVEPPEVVAHLPILCEERNTAYIFVPSKQQLGASLGIDVGSAAATIL
                     EAGEAQHIVEQVVNSISNMKGKK"
     gene            2141..2356
                     /locus_tag="VHF44_03290"
     CDS             2141..2356
                     /locus_tag="VHF44_03290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S28e"
                     /protein_id="HEX2124608.1"
                     /translation="MSKNIEEKVIPAEVIQIVGRTGIAGEVIQVRVKVLEGKDKGRIL
                     TRNVKGSIRMNDILMLRETEREARKIK"
     gene            2385..2600
                     /locus_tag="VHF44_03295"
     CDS             2385..2600
                     /locus_tag="VHF44_03295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24e"
                     /protein_id="HEX2124609.1"
                     /translation="MSKIATSLRNCFFCGRHISAGTGIMLVKNDGSIQWTCSDKCKKN
                     LRKLKRDPRKLKWTTKYVKGGIKVKKK"
     gene            2605..3012
                     /gene="ndk"
                     /locus_tag="VHF44_03300"
     CDS             2605..3012
                     /gene="ndk"
                     /locus_tag="VHF44_03300"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004550 - nucleoside diphosphate kinase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEX2124610.1"
                     /translation="MVLEQTLIVVKPDGFQRALAGKILARFEEKGFEIKNLKSYNFTK
                     EKAKEFYSVHSEQPFFNELVSFISSGMVVACILEGNNAVNTVRIMIGATKSFEANPGT
                     IRGDFGLGFTDNIIHASDSYESFIKESQVIFNS"
     gene            3013..4797
                     /gene="infB"
                     /locus_tag="VHF44_03305"
     CDS             3013..4797
                     /gene="infB"
                     /locus_tag="VHF44_03305"
                     /inference="COORDINATES: protein motif:HMM:TIGR00491.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEX2124611.1"
                     /translation="MKLRQPVVVVLGHVDSGKTSLLDKIRGTAVQSREVGGITQHIGA
                     SFFPIETIKGLTGSLYQKLSKSESQIPGLLVIDTPGHEVFANLRIRGGSAADIAIVVV
                     DVNKGFEAQTNESIEILRKRKVPFVIALNKIDLISGWRNGNTPFISDQIKKQDLNIQT
                     VLDEKIYNVVGSLSRLGYNSEAFWRIKDFTKELAIVPVSATSGVGIPELLAVMVGLTQ
                     QYLAKKLERRDGAAKGIVLEVNEEIGLGPSANVILLDGILKQGDTVAVAKRDSAIVTR
                     IKALLLPKPLDEMRDPRDKFKPVSAVMSAAGLKITSPDLDGVLAGSPLYVVEKKDDEN
                     RLKIMVESEIKSAIINTDSNGVILRCDTIGSIEAIMDLLRKANIPIQSADIGHITRRD
                     VIAASAVKEKDRYVGVLLGFNVKVLDDAQKESQERGVKIFNERIIYNLVRSYTDWVTY
                     QKEHEHSIIFNEIPPICKFQFLKGFIFRRNDPAVFGAEILIGKLRQKVLVINENGKKI
                     GTIHQVQESGKAIEEATKGMQVAVSIKGPVIGRQINEEDIFYTDLNSRQAKLLIERFN
                     HRLNEEEKEVFETILKLKRKTDPAYGYI"
     gene            complement(4880..5242)
                     /gene="trxA"
                     /locus_tag="VHF44_03310"
     CDS             complement(4880..5242)
                     /gene="trxA"
                     /locus_tag="VHF44_03310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0015036 - disulfide oxidoreductase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEX2124612.1"
                     /translation="MSVEKKASSAHAGGNQALMELSETNFDEIVSGSKPVLVDFWATW
                     CGPCQFMLPIFDKLAKKYGDKVSFGRLNVDDNQGLAMRFDVYAIPTFIIFMNGKAIDR
                     AVGAVGEKGLEGLLQKYQ"
     gene            complement(5420..5842)
                     /locus_tag="VHF44_03315"
     CDS             complement(5420..5842)
                     /locus_tag="VHF44_03315"
                     /inference="COORDINATES: protein motif:HMM:NF014058.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="archease"
                     /protein_id="HEX2124613.1"
                     /translation="MEFRYLDHMTDAIIEAYGSSLEEAFENSAKGLVNTMFRIKEITP
                     DKEYEIIAKGHDIESLPYDWLEKVMLRILIDNIVLSDFKVKISESNGDYFLKGIGKGE
                     ALDLQKHHYKVEIKGVTYHEMEIKQKENIITTRFLLDL"
     gene            5925..7205
                     /gene="hisS"
                     /locus_tag="VHF44_03320"
     CDS             5925..7205
                     /gene="hisS"
                     /locus_tag="VHF44_03320"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: protein motif:HMM:TIGR00442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004821 - histidine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006427 - histidyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEX2124614.1"
                     /translation="MKLEIPRGMRDIEPEELHNINYIKEKFMETTCLFNFKVMEPSPL
                     EMLTTLEAKAGESISNEIYSFTDKGHRNIALRFDLTIGLTRFVATRRDLKMPVKLASF
                     SDVWRYDEPQAGRYRYFHQWDIEIYGPFSKESDADVIEFVSVFLKKLGLNVMVEVNDR
                     QLIEEYIKQKLGVAEEQIIPDILRAVDKVTKKSLSELYEEYKDKINLSTLQHLVDLSS
                     IKGSVNEVYSKADLEGLENWSKVVALMDSLKSRRVDNVRVNLGIVRGLDYYSGVVFEA
                     FDPFIGLGALVGGGRYDRLTHAFGREDIGAIGAAGGVERIMMALKKNGILKYVPKQMV
                     YVAYTSSNIKTSALGIVSMLRSSGISTDYNLNNGRSLRKQLDDAASKGAVLTVIVGPE
                     EIEKGEVTVRSMEDGTESKQKVKELAKILDRMFH"
     gene            complement(7202..7459)
                     /locus_tag="VHF44_03325"
     CDS             complement(7202..7459)
                     /locus_tag="VHF44_03325"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124615.1"
                     /translation="MFIEYKGKVFLAPNTSDEEIVNKAKKKLVEIGIKEEHIQINYNI
                     QDLEVGDIYVSYEPPDLVVRNVYDKKASGITKMKSSGMIQI"
BASE COUNT         2577 a         1246 c         1558 g         2195 t
ORIGIN      
        1 cttagggatt cgtgggttca aatcccacga atccctaagg aacagggttg taggagcgcg
       61 catgtgtgtg tattgtactg tcctggctca ttctaagctt cgcactcctt ctaacacata
      121 ttgtgagaaa gagacctgcg ccgttggcca ggcttggcaa cccccgcacg cacacaagca
      181 cgcacacgca acatccattt tgaatcattc aatagccaaa tttatctatt cttattctct
      241 acaactatag atatataatg caaaaaaaca atcctagact ttttggaact aatggcgtta
      301 ggggagtatt tggaaaggaa ttcacgctcg atctagttgt tgatctatca tattcccttg
      361 caacatattt tggaaaagga ccaattattg taggacatga tggaagaaac tcaagtccaa
      421 ttttatcaaa aatagtacgt tcggtaatca attctgcagg aatagatgta ggtaatgctg
      481 gattggtgcc tactccttgt cttcaatacg ctgcaaaacg acttggttac aatggcggaa
      541 taatgatcac agcttcccat aatccacctg agtacaatgg aataaagcct actgctgatg
      601 acggggtaga gatctctcga gaagatgagt taaaagttga agatatctat tactctaaaa
      661 atttctccaa aagtgatagt tttggtcgag attataccaa tgagaccata attgattctt
      721 atatagaaaa agtcctctca cttgtaaata ttgaaaagat cagacaaagg aattttacag
      781 ttgcaatgga cattggaaat ggtgcccaat ctcgtgtagc tccatttttg ttaaataaat
      841 taggatgtaa agtaattact ataaatggca atattgacgg tgattttcct ggacgcggat
      901 cagagcctac tcctgaaaac cttaagatgc tttcaaatat ggtgaaaggc ttggaggctg
      961 attttggagt agcatatgac ggagacggag atcgaagctt attttgcgat gagagaggaa
     1021 cagtacactg gggagatatg gttggagcag caatagtgag atatctatta aaaacaaaac
     1081 atagaagagc agaagttgta tgtccgatca atactacaat ggcgctttct atggttgcaa
     1141 aagaagcaga ttcaaaggta attcacacaa aggtcggaag cgtcgaggta tcaagagaaa
     1201 tgttaaggcg caaatcattc attggcctag aagagaatgg cggttttatg tatggcaaat
     1261 taaatgaagt tagagatggc gcaatgacta cagctctagt tttggagatg ctgtcgttat
     1321 caaatgatga taataataat aatcagacat tgtcgcagat aatttcttca ttaccaaaaa
     1381 tatttcaata taaaactaag tttaaatgtc caacaaaaca gattgctaat aacatcgtga
     1441 atttatgttt agaacatggc agtccaaaaa aaattgaaac cctggatgga gccaaaattt
     1501 ggatagatga ggatacatgg attatggtta gaccaagtgg gactgagccg cttgtcagga
     1561 tgtacgccga atctgtagat agttcattgc taaattcaaa agttgcagaa tatcgtagat
     1621 taattgaaag taaactctag acattatgcc aagatatgca ttggacaaca tttttaatac
     1681 gcttcttctt ctcttagaaa ggaatgagga tgatcccaat gggtgataga atgaattatg
     1741 agtaaaccat attatgtaaa atttgaaact cctaaagatt tagtaagtgc cgtttatgaa
     1801 gccgttcgct tagcaaaaca gagcggcaag gtaagaaaag gcactaatga aactacaaaa
     1861 tcaatagaac gtggtacaag tcgactgact gttatagcag aagatgtaga accaccagaa
     1921 gtagttgcac atctacctat tctctgtgaa gaaagaaaca cagcttatat ttttgtgcca
     1981 agcaaacagc aattaggtgc ctctcttggg atagatgttg gctctgctgc agctaccatt
     2041 ttagaagcag gtgaggctca gcatatagtt gagcaagtag taaattcgat ttccaatatg
     2101 aaaggcaaaa aataatgatg gtggtaggtg tatatagtag atgagcaaaa atatagaaga
     2161 aaaagttatt cctgcagaag ttattcagat cgttggcaga acggggattg ctggtgaagt
     2221 aattcaggtt agagtaaaag tcttggaagg aaaagataag ggtcgtatcc taaccagaaa
     2281 tgtcaagggc tcaattagaa tgaatgatat cttgatgctt agagaaaccg agcgagaagc
     2341 acgcaaaata aagtgagaga attaacgata ggatcgtata ataaatgagt aaaatagcaa
     2401 cctctcttcg taactgcttc ttctgcggaa gacacatatc agcaggcacg ggaattatgc
     2461 tagtcaaaaa cgatggctcg attcaatgga cttgctcaga taaatgtaaa aaaaaccttc
     2521 gcaaattaaa gcgggatcct agaaagttaa aatggaccac taaatacgta aagggtggta
     2581 taaaagtgaa gaagaaataa cattatggtc ttagaacaga ctcttattgt tgtaaagcca
     2641 gatggatttc aaagggcatt ggcaggaaaa attctcgcca ggtttgaaga aaagggattc
     2701 gaaattaaaa acctaaagtc ttataatttt acaaaagaaa aggctaaaga attttattca
     2761 gtacacagcg aacaaccttt ttttaatgag ctggtatcat tcatttcttc cgggatggta
     2821 gtagcatgca ttctagaagg caataatgcg gtcaatacag tgcgtataat gataggagca
     2881 acaaaatcat ttgaagcaaa tcctggaaca attagaggag acttcggtct cggctttaca
     2941 gacaatatta ttcatgcctc cgattcatat gaaagcttca taaaagagtc acaagtgatt
     3001 tttaatagtt aagtgaaact tagacaacct gtcgtagtag tattaggtca tgtagattcc
     3061 ggtaaaactt ctttactcga taagatacgc ggcacggcag ttcaatcgcg cgaagtcgga
     3121 ggcattactc agcatatagg ggcaagcttt tttcctattg aaacaattaa aggtttgaca
     3181 ggatctctct accagaaact ttctaaatct gaatcccaaa ttcccggatt gcttgttatt
     3241 gacactcctg gtcatgaagt ttttgccaac ctaagaataa gaggaggctc tgcagcggat
     3301 atcgcaattg tagttgtcga tgtaaacaaa ggctttgagg ctcagacaaa tgaaagcata
     3361 gagatcttga ggaaaagaaa ggttccattt gttattgcac tgaataaaat tgatttgatt
     3421 agtggctgga gaaatggaaa tacgcccttt atcagtgacc aaataaagaa acaagatctc
     3481 aatatccaaa cagtactgga tgaaaaaata tataacgtag tgggttcact ttcaaggtta
     3541 ggatataatt ctgaagcatt ttggcgtatc aaagatttta ccaaagaatt agcaatagtt
     3601 cctgtaagcg caacatccgg cgtaggaata cctgagctac ttgcagtaat ggtgggtctg
     3661 acgcagcaat atctagcaaa gaaattggag agacgtgatg gggcggcaaa aggaattgta
     3721 cttgaagtca acgaagagat aggtctagga ccgtctgcca acgtaatatt gttggacggc
     3781 attttaaaac agggcgacac tgtcgctgta gcaaaaagag acagtgctat tgtgacgaga
     3841 atcaaagcat tactgctacc aaagccactt gatgagatgc gagatcctcg agacaagttc
     3901 aaacctgtta gtgctgttat gtctgcagct ggtctaaaaa ttacctcccc cgatttggat
     3961 ggagtccttg caggcagccc tctttatgtt gttgaaaaga aagatgatga aaacagatta
     4021 aagataatgg tagaatctga aatcaaaagt gcaattataa acactgattc aaacggagta
     4081 atcctcagat gtgatacaat aggttcaatt gaagcaatca tggatctatt gaggaaagca
     4141 aatattccga ttcaaagtgc tgatattggg cacatcacaa ggcgagatgt aattgcagct
     4201 tccgcagtca aggaaaagga tagatacgta ggagtactgc tgggttttaa tgtcaaggtt
     4261 ctagatgatg ctcagaagga atcgcaggag cgtggagtga agattttcaa cgaacgaata
     4321 atttacaatc ttgtacgaag ttatacagac tgggttactt atcagaaaga acatgaacac
     4381 tccattatat ttaatgaaat accgccaatt tgtaaatttc aatttttaaa gggctttatc
     4441 tttagacgaa acgacccagc agtctttgga gcagagattt taattggaaa actacgacaa
     4501 aaagttcttg ttataaatga aaatggaaaa aaaattggta ctattcatca agtacaagaa
     4561 agcggaaaag cgattgaaga agctactaag ggaatgcaag ttgctgtttc tataaaaggt
     4621 ccagttattg gaagacaaat caacgaagaa gatattttct atacagatct gaacagcaga
     4681 caggcaaaac tgttgatcga gagattcaac catcgcttaa atgaagagga aaaagaagtt
     4741 ttcgagacaa ttctgaaact caaaagaaaa acagatcctg catatggata tatttagtag
     4801 tagtagtagt agcttgctat ataatagtca ctctggtggc agagaaatag aagaatcaag
     4861 taatatgtaa ttggctatgc tattggtatt tttgaagtaa tccttcgaga cccttttctc
     4921 ccactgcccc tacagctctg tcaatggcct tgccattcat gaagattata aatgtcggaa
     4981 tagcatacac atcaaatctc attgctaatc cttggttatc gtcaacattc aacctaccaa
     5041 atgatacctt atcgccatat ttttttgcta acttgtcaaa tatgggaagc ataaattggc
     5101 atggtccaca ccaagtcgcc caaaagtcta ctaaaactgg cttgcttcca ctcactattt
     5161 catcaaagtt cgtttcagaa agctccatta aagcctggtt accacctgca tgcgcactag
     5221 aagctttttt ttcaacactc atgttttcta tgaattagat gatgtatttg atatttaaga
     5281 ttttttaatc tttaagtaat tttcattgtc agaaaacgct ttcctatgtt attatatatt
     5341 ttcacactaa acaattttta taatttcaat attacttttg tatacaaggg atggtcaaaa
     5401 attacaataa aaacatagat tatagatcta acaagaatct agtcgtaatt atgttttctt
     5461 tttgtttaat ttccatttca tgataggtta ctcccttgat ttcaacctta taatgatgct
     5521 tttgtaggtc taatgcttct cccttaccaa tacctttaag aaaataatcg ccgttacttt
     5581 cagagatttt aactttgaaa tctgataata caatattatc aattaatatt cttagcataa
     5641 ctttctctaa ccaatcgtaa ggtaaacttt cgatatcatg tcctttggca atgatttcat
     5701 attctttgtc aggagtgatc tctttgatac gaaacattgt attaacaagt cctttggcag
     5761 agttttcaaa tgcctcctct aacgagctgc cgtaagcctc aatgatagca tctgtcatat
     5821 gatcaagata tcgaaactcc attgttgtca ctttaatggt acaaaactta atgttattat
     5881 aattgatcgt aaaatctaaa tgtcaacaaa ttactgcgtt cattatgaag ttagaaattc
     5941 cacgtggaat gagagacata gaaccagagg aactacataa tattaattat attaaagaga
     6001 aattcatgga aaccacgtgt ctatttaact tcaaggttat ggagccatcg cctttggaga
     6061 tgcttaccac gctggaagca aaggctggag aatccatatc aaatgaaatc tatagtttta
     6121 ctgacaaggg acatcgaaat attgcattaa gatttgatct cacaatcggt cttaccagat
     6181 tcgtagcaac aagaagagat ttaaagatgc ctgtcaaact ggcatctttt tctgacgtat
     6241 ggagatatga cgaaccacaa gcgggacggt atcggtattt ccatcaatgg gatatagaga
     6301 tctatggccc attcagcaaa gaatctgatg cagacgtaat cgaatttgtt tcagtatttt
     6361 tgaaaaaact tggactaaat gttatggtag aagtgaatga tagacagtta attgaggaat
     6421 acattaaaca gaaacttggt gttgcagaag aacaaataat ccctgatatt ttgagggcag
     6481 ttgacaaggt cacgaagaag agtctctccg agctatatga ggaatataaa gacaaaatta
     6541 atttgtccac acttcagcat ctagttgatc tatcaagcat aaaaggaagt gtcaatgaag
     6601 tttattcaaa agcagatcta gaaggattag aaaattggag taaagtcgta gcattgatgg
     6661 actcactaaa atccagaaga gtcgataatg tcagggttaa tctcggaatt gtaagaggac
     6721 tagattatta ttcaggagta gtctttgaag catttgatcc atttattgga ttgggtgcac
     6781 ttgttggcgg aggcaggtat gatagattaa ctcatgcttt cggcagagag gatattggcg
     6841 caattggcgc agcaggaggg gtagaaagga taatgatggc tcttaaaaaa aatggaattc
     6901 taaaatacgt gcctaaacaa atggtttatg ttgcatatac ttcgagtaat ataaaaacat
     6961 cggcgttagg tatagtttcg atgttgcgaa gcagcggaat tagcactgac tataacctta
     7021 ataatggaag atcacttagg aagcaacttg atgatgcagc gtcaaaaggt gcggttctaa
     7081 ctgtgatagt gggacctgaa gaaattgaga aaggagaggt aacagtgagg tcgatggagg
     7141 atggcactga gagtaaacaa aaagtaaagg aattggcaaa aatcttggat agaatgtttc
     7201 actagatttg tatcattcca ctgctcttca tttttgtaat tcccgatgcc tttttatcat
     7261 aaacatttct gactactaga tccggcggtt catagctgac gtatatatcc ccaacttcta
     7321 gatcttgtat attgtagttg atttgaatat gttcctcctt gattccaatt tctactaatt
     7381 ttttcttagc cttattaact atttcttcat cagaagtatt gggagccaga aataccttac
     7441 ctttgtattc tatgaacata tgtatttatg tggtgttgat tactaaaata ggttaaaaac
     7501 tttatatgtt gtttagaata ttatctttag atcctcaatc cgctagcaaa gaccattata
     7561 atatattgta tttcat
//
LOCUS       DATABJ010000201         2662 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1029688, whole genome shotgun sequence.
ACCESSION   DATABJ010000201 DATABJ010000000
VERSION     DATABJ010000201.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2662)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2662)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2662
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1029688"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..2388)
                     /locus_tag="VHF44_03330"
     CDS             complement(<1..2388)
                     /locus_tag="VHF44_03330"
                     /inference="COORDINATES: protein motif:HMM:NF014565.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF6541 family protein"
                     /protein_id="HEX2124616.1"
                     /translation="MLDTSRTLLKTKGFEFQTRHLLIIAVLAIAFSTAFIMRSYPAKY
                     GFYLNEFDPYFDYRATKFIVENGLEQYWQWHDTMSWYPEGRDIPKTSQSGLHIVSAYL
                     YMIFGGGSSLLDFTIILPVILGSLTTIIVFALVRTLSSTTAGMFAALLFAFTPSIIQR
                     GNLGWFKSEPLGLFFGLLATYLFISAIKHHEIKYAIAKAVTGGIILGLANASWGGVQY
                     FSIPLSIFFICLPFFRKDIQLPMYVAIAFTIFTLISAGAFPRPGMSFVLGLPGIAMIG
                     GTVFLVIANFLKKISQPRREIRNTLFLLIAFFAIAISFLLAGTYYSSSFRYLNAINPF
                     LSSQNPLVESVAEHFTPTVVDYFTDYSILLMFAGLGAWIAFKRRDDMSLFALIIGITG
                     VYVSATFARLMVFSSIGIIVLASLGLYEVTRNILEYREHLASRSTSLKTAKLKKRLEH
                     GRVQTPIKRIVRIAYVGIIIFMLSIPLLDYRGILYPQNSNWLSSADVPPSIANGGTGY
                     RLQTDDWINALDWISKNTPKDAVIASWWDYGYWITTMGNRTSLADNATINQTRIETLA
                     RMFMEDEEEGIKIAKDLKADYILVYVVGQRYGGVNGTSFYTLGNGGDESKKQWFIRIG
                     GFNELDYLEQDGFTPTSRFWNGTLLGNLIPFTPVSYASFQGGVLTNIQPQYQPGSMGL
                     YTKNIKYPGDAEDNQPLRLVYSSDSFRTDEPGLVFGVLLYEVNDDYTPKTSTTDLSVK
                     NNLQNPSSLSEQGDGNSTDAAASASASAAAVDSSTSKEIAVINTTQGIIKMEFFPN"
BASE COUNT          881 a          501 c          461 g          819 t
ORIGIN      
        1 attaggaaag aattccatct tgattattcc ctgcgtagtg ttaattactg cgatctcttt
       61 tgatgtagat gaatcaactg ctgctgctga tgcggatgcg gatgctgctg catcagtaga
      121 atttccatcg ccttgttcgg ataacgaact aggattctgc agattatttt ttaccgataa
      181 atctgtagta gatgtttttg gagtgtaatc atcatttacc tcatagagta gaactccaaa
      241 gacaagacct ggctcgtctg ttctgaaact atctgatgaa tataccaaac gtaatggctg
      301 attatcttct gcgtcaccgg gatatttgat gttctttgta tagagcccca tactcccagg
      361 ctgatattgt ggttggatat ttgtgagaac tcctccctga aatgaagcat aagagacagg
      421 tgtaaatggt atcagattac ctagaagagt tccattccag aatcgtgaag ttggagtaaa
      481 accgtcttgt tctagataat cgagctcatt gaagcctcct atcctaatga accattgctt
      541 cttgctctca tcgcctccat ttcccaaagt ataaaatgaa gtcccattga ctccaccata
      601 tctttgtcct actacataaa ctaaaatata atctgccttc aaatccttag caattttaat
      661 accttcttct tcatcttcca taaacattct agccagagtt tcaatccttg tttggttaat
      721 agttgcatta tctgctaagc tagttctatt gcccatagtt gttatccaat aaccatagtc
      781 ccaccatgaa gcgattactg cgtcttttgg agtattcttt gatatccaat ccaaggcatt
      841 tatccagtca tcagtttgta atcgatatcc tgttccacca tttgctatcg acggaggtac
      901 atcagcagag cttaaccaat tagagttttg tggataaagt attcctctat aatctaacaa
      961 tggaattgaa agcataaaaa ttattatccc aacatatgca attctaacga ttctttttat
     1021 tggtgtttgt actctaccat gttcaagcct tttctttaat ttagcagtct ttaatgaagt
     1081 tgatcttgat gctaaatgtt ctctatattc tagaatattc cttgtgacct catataatcc
     1141 taatgaagcg agtacaatga ttcctatcga tgaaaatacc attaatctag cgaacgttgc
     1201 actaacatac actcctgtaa ttcctataat taatgcaaat aacgacatat catccctacg
     1261 tttgaacgct atccaggcac cgagcccagc gaacatcaac agtattgaat agtctgtgaa
     1321 ataatctaca actgttggtg taaagtgttc agctactgat tcaacaagag gattttgtga
     1381 tgaaagaaac ggattaattg cattaagata tctaaaggaa gaagaatagt atgttcctgc
     1441 taaaagaaag ctgattgcga ttgcaaagaa tgcgatcaaa agaaataatg tattccggat
     1501 ctctcttctt ggttgactta tttttttcaa gaagtttgca ataaccaaaa atactgtacc
     1561 accgatcatc gcaataccag gtaaacctag tacgaaagac atcccaggtc ttggaaatgc
     1621 tccagctgat attagcgtaa atatcgtaaa tgcaattgca acatacattg gaagttgtat
     1681 atcttttctg aagaaaggaa gacaaatgaa gaatattgat aatggaatgc tgaagtattg
     1741 aactcctccc cacgatgcat tagcaagtcc aagtataata cctcctgtta cagccttagc
     1801 aatagcatat tttatttcat gatgtttgat tgcagaaata aatagatagg ttgcaagtaa
     1861 tccaaaaaat agtccaagtg gttctgattt gaaccagcca agatttcctc gttgtattat
     1921 agaaggggtg aatgcgaaaa gcagagctgc aaacatgcct gccgtagtac tactcagtgt
     1981 cctcacaaga gcaaaaacaa ttattgtagt aagtgaacca aggattacag gcagaataat
     2041 cgtaaagtcc aacaatgagc tgccgccacc aaagatcata tagagataag cagagactat
     2101 gtgaagtcct gattgggacg ttttaggtat atcgcgccct tctggatacc aagacattgt
     2161 gtcatgccat tgccagtatt gttctaggcc attctcaaca atgaatttag tagcacgata
     2221 atcaaaataa ggatcaaatt cattaaggta gaatccatat tttgctggat acgatcgcat
     2281 aataaatgct gtagaaaaag caatagctag aactgcaatt atcaaaagat gtcttgtttg
     2341 gaattcaaac ccttttgttt taagaagcgt cctactggta tctaacataa taatgagaat
     2401 tgatgtttct tcctcttttt taaggtactg ccaataataa aagtaaatca tataaaaaga
     2461 tcagtggata ctgataatac ctatatctca atttgataaa gttaatcacc cctcttttat
     2521 caaaacaaag atttgaacaa caatagaagc gggccaacat tcctaacaat aaaaatacca
     2581 cattattgaa taataataat atttgagaga aaaagataaa tcaaaaataa ctggtacaga
     2641 tacaagagat taatgaaaac ta
//
LOCUS       DATABJ010000202         2204 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1030432, whole genome shotgun sequence.
ACCESSION   DATABJ010000202 DATABJ010000000
VERSION     DATABJ010000202.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2204)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2204)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2204
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1030432"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..627)
                     /locus_tag="VHF44_03335"
     CDS             complement(<1..627)
                     /locus_tag="VHF44_03335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEX2124617.1"
                     /translation="MMQNSCDTLITNAAAVIPRIGIVQTNIMIENGKIKTLTKSIDNI
                     HASKIINANGKYVLPGVIDPHVHYGVYIPIDEAAQTESRSAAVGGVTTMIRMLRIHES
                     YQKKIGKQLEASKHHHHIDYSVHASILTPDQIKDIPYLKKIGINSVKIYMNLGADLNR
                     IFMDLEPGDHDIREREVNMTDELMSSIIEEASKVHSTVLVHAEDPVVCA"
     gene            1099..1920
                     /locus_tag="VHF44_03340"
     CDS             1099..1920
                     /locus_tag="VHF44_03340"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124618.1"
                     /translation="MSTRDDDPFSNWAELIHKPVYSIDGKKLGFLSKVLSDYMFVGRG
                     FINLVKYLIPKSFAESVSKKGIRLSITAYEVHSKYSYTKMKHAITNFGILPETVVGHR
                     TIYDRFQTLRYHATRNRFAAVIAFVSGILFLISGYKANLAMYDIIRQEVMIYTARELW
                     AFLLAPVGILAMLSQFGGITVLVGAALFLVNRVTLGKFLVFIGTGQGLFTIALRIWSE
                     IWSGRIALENNYITSLTSSAVGLGVLFAVLAQSIPKGWGETIVSRGIRYIFGKED"
BASE COUNT          671 a          358 c          387 g          788 t
ORIGIN      
        1 agcacatacc acgggatctt ctgcatgtac aagtacagtt gaatgtactt tagatgcttc
       61 ttcaattatt gaagacatca attcatctgt catgttaact tcacgttctc tgatatcgtg
      121 atcaccgggt tcaagatcca taaaaatacg attcagatct gctcccagat tcatgtagat
      181 cttgacggaa ttgattccga tcttttttag ataaggaata tcttttattt gatctggtgt
      241 taggatggat gcatgaactg agtagtcaat atgatgatga tgtttgcttg cttcaagttg
      301 ttttcctatt tttttttgat agctttcatg gatcctaagc atacggatca tagtagtgac
      361 tccacctact gcagcggatc tagattctgt ttgagccgct tcatcgattg gaatataaac
      421 accataatgt acatgagggt ctattactcc tggtaagaca tactttccat tagcattaat
      481 tatttttgaa gcatgaatat tgtcaattga ttttgtaaga gtttttattt tcccattttc
      541 aatcattata ttagtttgta ctattccgat cctagggatc acggcagccg cattcgtaat
      601 taaagtatcg caggagtttt gcatcattta atttctctaa tgattggctg taagctcacg
      661 cacgtttaat cttttaatga attagcaagg tttttttcgt cattctatta ctattattaa
      721 agaattatac gatactttat ttgataaatg ccatcaccag cagcagatag tacaagattc
      781 tagaaatagt aaaattcact acatttcctt ctcatataga ttaattaatc aaatgatact
      841 atacatgttt tttagatggt agttgttgta atagcttgta atagctagaa agaacactca
      901 agtattaatc tttaatttgg tattaattgt tctctttgtt atcattatta ttttcatttt
      961 tcatacaata agatcatttt tattctgatt cgataataat tttaaagatc cttttattat
     1021 tcttctgtta aaggactttt tctttcaact ataacaaata ataatgcaag agtgcttatt
     1081 aatattgtaa tatcacgagt gtctacaaga gacgacgatc ctttttcaaa ttgggcagag
     1141 ctaatccaca agcctgtata ttctattgat gggaagaagc ttggcttcct tagcaaagta
     1201 ctctcagatt acatgttcgt tggtcgagga tttatcaatt tagtgaaata tttaattcca
     1261 aaatcatttg cagaatcagt aagtaaaaaa ggaattagat taagtattac agcttatgaa
     1321 gtccactcaa agtattcata tacaaagatg aaacatgcta ttactaattt tggaatccta
     1381 cccgaaactg tcgtaggaca taggacaatt tatgatagat ttcagacttt acgttatcat
     1441 gctactcgaa atagattcgc agcagtaatt gcatttgttt ctggaattct atttctgatt
     1501 tcgggataca aggcaaactt ggcaatgtat gatattatca gacaggaggt tatgatatat
     1561 acagccagag aattatgggc atttctatta gctccagttg gcattcttgc tatgttaagt
     1621 cagtttggag ggattacggt acttgtggga gcggcattat ttctcgtaaa tagagtaact
     1681 cttggaaaat ttttagtttt tattggaact ggccagggtc tgtttactat agctcttcgc
     1741 atttggtctg aaatatggtc tggtagaata gcacttgaga ataattatat aacatcgctg
     1801 acgtcctctg cagtaggatt gggtgtcttg tttgcagtct tagctcagtc aattccaaag
     1861 ggatggggag aaactattgt tagtagggga ataagataca tttttggaaa ggaggattaa
     1921 taatattgat tgatttattt atttcataca ctactacttc gtaaaattat tcaaatggcg
     1981 taatctctct tgactatgag accaaataca gacagcaaaa gcagaaaata tcaaaatatt
     2041 atctctaaca gccttctatt gttactacta ctagccacgg cgtagtctaa taataataac
     2101 gacgacgacc agcagagcta ttcgttacgt ttgatatgca tttttgattt cttatcacta
     2161 tttgcaaata ggatctcaca atcgcagcga ccatcaagcc ttac
//
LOCUS       DATABJ010000203         2857 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1903104, whole genome shotgun sequence.
ACCESSION   DATABJ010000203 DATABJ010000000
VERSION     DATABJ010000203.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2857)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2857)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2857
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1903104"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            289..1413
                     /locus_tag="VHF44_03345"
     CDS             289..1413
                     /locus_tag="VHF44_03345"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF013704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_function: GO:0008170 - N-methyltransferase activity
                     [Evidence IEA];
                     GO_process: GO:0009307 - DNA restriction-modification
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific DNA-methyltransferase"
                     /protein_id="HEX2124619.1"
                     /translation="MPTKLYSISKNKNENKNWKKIIVRRDKKKLSNLLFHSDNIDAMN
                     HLIKLGFSEKIDLVYIDPPFWSGKKYFHRINNAQNIAFEDIWKRQINVYLEMIYPRLY
                     TIQKLISQSGSIFVHLDWHIVHYVKVIMDEIFGHENFRNEILVKRGRRKNLLYQFQSI
                     DRMHSANDTILWYSKSANTKFSHPLAKHTSNSKWMGFWSNVDRPTMRYEIFGIIPERG
                     QWKWCKVRALKAIENYKHYKERFSSIPLEEYWVETNKKLEFIRKREGIKYAEYWIPPK
                     TYRILDNVWMDIETYNYSTGYGTEKHTELLERIIGQFSKVGDLVADFFCGSGTTLLVA
                     QKLARKWIGCDSSSLAMEVTKRRLEGSEFSLINIPSCSSL"
     gene            1525..1956
                     /locus_tag="VHF44_03350"
     CDS             1525..1956
                     /locus_tag="VHF44_03350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit beta"
                     /protein_id="HEX2124620.1"
                     /translation="MGFQTKSDYEGLLKRLEDKIGNTYRKEASRLEVPTPQIIWVGQR
                     TFFRNFMEFPKALRRDPEKLLLYLNKELASAGYIAGERVIFLGRKEPSSFGALIDRYI
                     KDYVICPVCGSPDTRTEKNKKLGFLLCEACGARSSIKGNYA"
     gene            complement(2064..>2857)
                     /locus_tag="VHF44_03355"
     CDS             complement(2064..>2857)
                     /locus_tag="VHF44_03355"
                     /inference="COORDINATES: protein motif:HMM:NF014433.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ArsA-related P-loop ATPase"
                     /protein_id="HEX2124621.1"
                     /translation="DMPASGEALRYLYFPKVIGSIGKKFTGLMGMFSGVTRMFQPLSK
                     TTSLPSKNVLQSEIDLLDRLEMLSDIIRNPNITSIRLVANPDTFSIENAKRAFMSASL
                     YGINVDLAIINKIIPPGSPDENYANWAATQRTKIEEAKANFYPLPVKEIKLYTNELRG
                     AEMLRENGELIFENQDPATVFYHGKAFAFITEDSKLRMTVKVPFTEKDDFDVERHGDQ
                     LTIKVKNPVGYLVNIVPLPTATIGMKLAKAKLQGDELNVLFEKYL"
BASE COUNT          996 a          465 c          472 g          924 t
ORIGIN      
        1 tatattataa ttataagtgt taatatttat atatttaaat acaatcagta tattagtata
       61 atcgttactt ttatgccatc tgaaaatatc taaaatcact ttatgtttgg ttgatcttca
      121 agaatccact ctattcatat actaaaattt tctattagaa cgaaaataag aatgaattgt
      181 agacaattac gaaatcatag attaagaaaa tattgttata ctatttggag tccgatttaa
      241 ttattaataa ccttttataa tatttcaaat atgttccctt atgaagatat gcccacaaaa
      301 ctttactcaa tatcaaagaa taaaaatgaa aataaaaatt ggaaaaaaat aattgtaaga
      361 agagataaaa aaaagctctc taacttactt ttccattcag ataacattga tgccatgaat
      421 catttaataa aactagggtt ttcagaaaag attgatcttg tatatattga tcctccattc
      481 tggagtggta aaaaatattt tcatcgcata aataatgctc agaatattgc atttgaagac
      541 atatggaaac gacaaataaa cgtatatcta gagatgattt atcctcgact atatacaatt
      601 caaaaactga tctcacaatc tggttccata tttgttcatc ttgactggca tattgttcat
      661 tatgtaaaag taatcatgga tgaaatcttt ggacacgaaa attttcgtaa tgagatctta
      721 gttaaaagag gtagacgaaa aaatctactt tatcaattcc agtctattga tagaatgcat
      781 agtgcaaatg atactatact gtggtattca aaatctgcga atacaaaatt ttcgcatcca
      841 ctagctaagc atacttcaaa ttcaaaatgg atggggttct ggagcaatgt agatagacct
      901 actatgcgct atgaaatatt tggcattatt ccagaaagag gacagtggaa atggtgtaaa
      961 gtcagagctc taaaagcaat agaaaactac aaacattata aagagagatt ttcttctatt
     1021 cctttggaag aatactgggt agagactaac aagaagctag aatttattcg taagcgtgaa
     1081 ggtataaaat atgcagaata ctggatccca ccaaaaactt acagaattct tgataatgtt
     1141 tggatggata tagagacata taattattca acaggctacg gcacggaaaa acacacagag
     1201 ttattagaaa gaataattgg acaattttct aaagttggag atctggttgc agacttcttc
     1261 tgtggctcag gtacaacctt attagtagca caaaagttgg caagaaaatg gataggatgc
     1321 gactcatctt ccttggcaat ggaggttacg aaaagaaggc ttgaaggttc tgagtttagt
     1381 ctaatcaata taccctcgtg tagtagtcta tgatatagca gaacggtctt aatccaataa
     1441 acataattac ttaaagttgc tcacttactt ttcctcctcc tcgcatacat aacgcacatt
     1501 aaacagaatg tcaatacaaa gaatgtggga tttcaaacaa aatcagatta cgaaggttta
     1561 ctaaagcgtt tagaagacaa aataggcaat acttatagaa aagaagcatc aagactcgaa
     1621 gttccgactc cccaaattat ctgggttggt caacgtacat tttttaggaa tttcatggaa
     1681 tttcctaaag cattgagaag agacccagaa aaattactac tttatctcaa taaggaactt
     1741 gcctctgctg gttatattgc tggtgagcga gtaatattcc tgggacgcaa agagccatca
     1801 tcttttggag cgttgatcga tagatatatc aaggactatg taatttgccc tgtttgcgga
     1861 agcccagata ctagaacaga aaagaacaaa aaacttggat ttcttctatg tgaggcttgt
     1921 ggtgcaagat cttcaattaa aggaaattat gcctaaattt aggatttatt taatattaac
     1981 tctattgact atttgttaaa cataaagaaa aattgaacga tcatcatctt aaccgataca
     2041 gtatgatatc taaaattcat ttattaaaga tacttttcga atagcacatt taattcatcg
     2101 ccctgtaatt ttgctttcgc aagcttcata cctatagtag cagtaggtaa tgggacaata
     2161 ttaacaagat aacctacagg atttttgact tttatagtaa gttgatctcc atgacgttct
     2221 acatcaaaat catccttttc agtaaatgga accttaactg tcattcgtaa tttggaatcc
     2281 tctgttataa atgcaaatgc ctttccatga tagaagactg ttgcgggatc ttgattttca
     2341 aatattaatt ctccgttctc tcttaacatt tcggctccac gtaattcatt ggtataaagt
     2401 ttaatttcct ttaccggaag tggatagaaa tttgcctttg cttcttcaat ctttgtccgt
     2461 tgagtagctg cccaatttgc ataattctca tcaggactgc ctggtggtat gattttatta
     2521 attatagcaa ggtcaacgtt tattccataa agactggcgg acataaatgc tcttttagca
     2581 ttctctatac taaatgtatc aggatttgcg accaatctta tacttgttat attcggattc
     2641 cgaataatat ctgatagcat ctcaagtcta tccaatagat ctatttcact ttgtaaaaca
     2701 ttctttgaag gtagcgaggt agtctttgat agaggttgaa acatcctagt aactccgcta
     2761 aacattccca ttaatccagt aaattttttt ccaatacttc caattacctt tggaaagtaa
     2821 aggtatcgca gtgcttctcc tgaggcaggc atatcaa
//
LOCUS       DATABJ010000204         2563 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1904229, whole genome shotgun sequence.
ACCESSION   DATABJ010000204 DATABJ010000000
VERSION     DATABJ010000204.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2563)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2563)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2563
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1904229"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            156..428
                     /locus_tag="VHF44_03360"
     CDS             156..428
                     /locus_tag="VHF44_03360"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124622.1"
                     /translation="MASAIFRVQSHKFSQDNIQTTLVCSKCDEVFSKEFLIDLEGQTI
                     EFKCPVCGAPGEADLPYKSAEEREEFEEDFEEVEEEEGGEEFEEEY"
     gene            complement(462..1448)
                     /locus_tag="VHF44_03365"
     CDS             complement(462..1448)
                     /locus_tag="VHF44_03365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication factor C small subunit"
                     /protein_id="HEX2124623.1"
                     /translation="MNKNVSNLMWVEKYRPAELDQVIDQKEIIRGLENLIKNPEEIPH
                     LLFAGPAGVGKTTTALCVAKGLLGEEWQRDTLELNASDERGIKMVRERVKEFAAVMKL
                     TTGNEEDNRPFRIIILDEADEMTPEAQTALRRIIEDSSRTTRFIIICNYLSQIIEPIQ
                     SRCVVFRFTRLTNEDIVGHLKTICQKEGVKYDDKALTQIYEATSGDLRHSINMLQAAA
                     GMGSVSLANVVASIGLSGKFKVGEVIKLALSGKFREARVKLLELIHVYGMSESDFLKY
                     ANQEAYDMKLERPDEFAALMAEYDYRLVSGAHPEIQLSALLAQLGKLGAKNK"
     gene            1593..2132
                     /locus_tag="VHF44_03370"
     CDS             1593..2132
                     /locus_tag="VHF44_03370"
                     /inference="COORDINATES: protein motif:HMM:NF017704.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124624.1"
                     /translation="MNATSSLQGKIGIIQGAYHIEYLMEDVRVTYKHDVKVSVDGVTI
                     DAKEGEISSIRRWVAKILVEQGDIEIQDSDISAYLSRALNRERIAKPHDLSGLDPDFY
                     IRINDYLEGLRERERENIIVSLNSFLASRLEKIVKLAAASPLSPELERKLSVEEKELY
                     ILVHNSASEFKERALKKFD"
     gene            2125..>2563
                     /locus_tag="VHF44_03375"
     CDS             2125..>2563
                     /locus_tag="VHF44_03375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HEX2124625.1"
                     /translation="MTEQQTAAALANDLEHFLRAFKDREGNYKYFDRINNMMASNFIS
                     LVVDYIDFDTFNPGLAKQITHNPDDMLEAFNEAILSILSEIHPDYAQEIRDKIKVRIG
                     NYTVQKGLRDINADVIDKLIGVSGMVVRSSEVKPLAKKIGYRCL"
BASE COUNT          822 a          446 c          475 g          820 t
ORIGIN      
        1 gatatgcggc ccatttagaa aaagcagaca gaataaacct gattggtttt aatgtactat
       61 ttaattagat caagtcagag agactattat atgcttttta tcatgttatc gatgacaagg
      121 cttataaaaa agaaaacttc ctataggtaa gaataatggc aagtgcgatc ttcagagtac
      181 agtcacacaa gtttagccag gacaatattc agacaactct ggtatgctca aaatgcgatg
      241 aagtcttttc taaagaattt cttatagatc ttgagggaca aacaattgaa tttaaatgcc
      301 cagtctgtgg agcacctggt gaagcagatc ttccatataa aagtgcagaa gaaagagaag
      361 agtttgaaga ggactttgaa gaagtagagg aagaagaagg cggagaagag tttgaagagg
      421 aatactagtt actgtatgta aaaaaaatta catgatattg tttatttgtt cttagcgcct
      481 aattttccta attgggctaa taatgcggat aattgaattt ctggatgagc accagatact
      541 agtctatagt catattctgc cattagagca gcgaattcat cgggtcgttc taatttcata
      601 tcataagcct cctgattagc atacttgaga aaatcacttt cggacattcc gtatacatgt
      661 attagctcaa gtagtttaac tctagcttct ctgaattttc ctgaaagagc cagcttaata
      721 acttccccaa ctttaaattt tcctgaaagt cctattgacg cgacaacatt agccagtgaa
      781 acagagccca ttcctgcagc cgcttgtagc atattaatag aatgccggag atctcccgac
      841 gtagcttcat aaatttgtgt aagagcttta tcgtcatatt ttactccctc tttttgacag
      901 atcgttttca agtgacctac aatatcttca tttgttaatc tagtaaagcg aaaaaccaca
      961 catctactct gaattggctc gataatctgc gatagataat tgcagataat tataaagcgt
     1021 gttgttctag agctatcttc aattattctt cttaatgcag tttgggcttc tggtgtcatt
     1081 tcatcagctt cgtcaagaat tattattctg aatggccggt tgtcttcttc attgccagtc
     1141 gtaagtttca ttacagctgc aaattctttt actctttcgc gaaccatctt gattcctctt
     1201 tcatcagaag catttagctc cagagtatct ctttgccatt cttctccaag tagccctttt
     1261 gcaacacaca aagcagtagt agtcttacct actccagcag gtcctgcaaa tagtaaatgc
     1321 gggatttctt ctggattctt aataagattt tctaatccac gaataatttc tttttgatct
     1381 atgacttgat ctaattctgc tggacgatat ttttcgaccc acattaaatt tgagacattt
     1441 ttgttcattg ttgacatatg tccttgatta actcggtggc ctttacagca ttaataactt
     1501 aactaaaatt tctcatttag cttagagctt aataaaaact acccttacaa aagatataac
     1561 taattcgaac atatatactt gatatatcta cgatgaatgc cacttcttct ttacagggca
     1621 agataggaat cattcagggt gcttatcata tagaatatct tatggaggat gttcgcgtaa
     1681 cgtataagca tgacgtaaag gtatcagtag atggagttac aattgatgca aaggaaggtg
     1741 agatttcttc aattcgtcgt tgggtcgcaa aaattttggt tgaacaaggc gatattgaaa
     1801 tccaagacag cgacatttca gcctatctct caagagcttt gaaccgtgag aggatagcaa
     1861 aacctcatga tctgtctggg ttagatcccg atttttatat tagaattaac gattaccttg
     1921 aaggattaag ggaaagagaa agggaaaata ttatagtttc gttgaattca ttcttggctt
     1981 cgcgtcttga aaagattgta aaattagccg ctgcatcacc tctttcgcca gaattagaaa
     2041 gaaaactgtc agttgaagaa aaagaacttt atattctagt tcacaattct gcttcagagt
     2101 tcaaggaaag ggcgttaaaa aaatttgact gaacaacaga ctgcagctgc attagcaaat
     2161 gatttggagc actttttacg agcttttaag gatagagaag gaaactacaa gtattttgat
     2221 agaatcaata atatgatggc ctctaatttt atttcactcg tagtagatta tatcgacttt
     2281 gatacattca atcctggtct tgctaaacaa attacacaca atccagatga tatgcttgaa
     2341 gccttcaatg aggcaatatt atctatttta agtgaaattc atccagatta tgcacaggaa
     2401 attagagata agatcaaagt cagaatagga aactatactg tacaaaaagg attgcgtgat
     2461 attaatgctg atgtaattga caaattgatt ggtgtttcag gaatggtagt cagatcttct
     2521 gaagttaaac cacttgccaa gaaaattgga tatcgttgtc tta
//
LOCUS       DATABJ010000205         1825 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1904832, whole genome shotgun sequence.
ACCESSION   DATABJ010000205 DATABJ010000000
VERSION     DATABJ010000205.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1825)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1825)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1825
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1904832"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..248
                     /locus_tag="VHF44_03380"
     CDS             <1..248
                     /locus_tag="VHF44_03380"
                     /inference="COORDINATES: protein motif:HMM:NF012355.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="cupredoxin domain-containing protein"
                     /protein_id="HEX2124626.1"
                     /translation="YEPASLTVKKGDAIEVVNEDSAPHTVTSGTGLEDPNAGQMFDTS
                     IINAAASAQLATADIEAGEYDYHCTVHPFMTGKLIVQ"
     gene            280..750
                     /locus_tag="VHF44_03385"
     CDS             280..750
                     /locus_tag="VHF44_03385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0016627 - oxidoreductase activity, acting
                     on the CH-CH group of donors [Evidence IEA];
                     GO_function: GO:0016653 - oxidoreductase activity, acting
                     on NAD(P)H, heme protein as acceptor [Evidence IEA];
                     GO_process: GO:0006784 - heme A biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="COX15/CtaA family protein"
                     /protein_id="HEX2124627.1"
                     /translation="MKANDIVILKILSFSTISVLFALIFIGGYVNASGVGLSCPDWPL
                     CPAGFVPLEEFIIEYFHRTVAATTGLLVIVTMIFTLKSRLTTRGMKIASIIASVAVIG
                     QIILGALVIIERLHAILVTIHLGLGLVLFSMSLITVLSAFKLSEDKTIRTASKV"
     gene            complement(1090..>1825)
                     /locus_tag="VHF44_03390"
     CDS             complement(1090..>1825)
                     /locus_tag="VHF44_03390"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124628.1"
                     /translation="PKIGNYQIVLSIANDDNSFVNRDNVDPPRNILSNTQACNCDRAV
                     FNISISSNFGDIRNSMLFTAVMAPMILFGFVLGLSFLKQKKRGLASNLTKGELLKYSI
                     MLLAMAGGMVHFAVFSGHGSLHIYYSIFLLAAGAAQIAYGILYVLITLTVEPIAFKSI
                     EYAKIYYRKTKIVNLFGLIGTGVLIGLYTYSVIFPPPLSPTNEPEEVEITGILSKSLE
                     IFLFAGIIYLMKWEKKRSQNQLVDIK"
BASE COUNT          602 a          315 c          322 g          586 t
ORIGIN      
        1 catatgagcc tgcttctctg acagtcaaga agggcgatgc aattgaagta gtaaatgaag
       61 attcagctcc acatacagtt acctcaggta caggattaga agatcctaat gcaggtcaga
      121 tgtttgatac aagtattata aacgcggcag catcagctca attagctaca gcagatatag
      181 aagcaggaga atacgactat cattgtactg tacatccatt tatgacaggc aaactaatag
      241 tacaatagta ataatagcgt gtatatatca taacacgaca tgaaagctaa tgatattgtc
      301 atactcaaaa ttctctcttt ttctactatt tctgtgcttt ttgctctcat attcatagga
      361 ggatatgtaa atgcctctgg agttggctta agttgtcctg actggccgct ttgtcctgct
      421 ggttttgtgc cgcttgaaga atttatcatt gaatattttc ataggacagt tgctgctaca
      481 actggattac tagttattgt aactatgata tttacattaa aatctaggct cactacaaga
      541 ggaatgaaaa tagcatcaat aattgctagc gtcgcagtga taggtcaaat aatattaggg
      601 gctcttgtta taatcgagcg gttgcatgcc attctagtga caattcatct tggacttgga
      661 ctggtattat tttcaatgag tttaataact gttctatcgg cttttaaatt atcggaagat
      721 aaaacgataa gaacagcatc aaaagtatag aagaatacaa agcccattgc tgcaccgata
      781 actattgaac atgtaataat agttgcagtc acttattgta ataaacaata taagtagcaa
      841 tagtaatagt agtagcagct tgcctgatct ttacccagta caattataac ttttatgatt
      901 ttatacatat ttcatttaga ctttattttc gttatgtcaa tcgtagaatt atcgtcaata
      961 tatggaacaa tatggtgttg ttggaacgat gatttattga gcaaagcaga aaggaacaaa
     1021 ggaaaaatat tgtatcaaac tcataaagtt atagaaataa ctgatcctct gcaagaattt
     1081 aaatcccttt cattttatat cgactaattg attctgcgat ctcttctttt cccatttcat
     1141 aaggtatata attcctgcaa acaagaatat ctctagagat ttactcaaaa tacctgtaat
     1201 ttcaacttct tctggttcgt ttgtcggtga gaggggggga ggaaagataa ctgaataagt
     1261 atataatcca atgagtactc ctgtaccaat tagtccaaat agattaacga tcttcgtctt
     1321 tcggtagtat atttttgcgt attctatact cttgaaagct atgggctcaa ctgttagagt
     1381 gatcaatacg tacaatattc cataggcaat ctgtgcagct cctgcagcta acaagaaaat
     1441 actataataa atatggagag aaccatgccc tgaaaaaact gcaaaatgaa ccatacctcc
     1501 tgccattgct agaagcatta tagagtattt caaaagctct ccttttgtta gatttgaagc
     1561 aagacccctt ttcttttgtt ttaaaaacga taatcctaaa acaaaaccaa ataaaatcat
     1621 aggtgccatt accgctgtga ataacattga gttgcggata tcaccaaaat tgctagaaat
     1681 tgatatatta aaaactgctc tatcacaatt gcaagcctgg gtattactca aaatgtttct
     1741 tggaggatca acattatcgc ggtttacgaa actattatcg tcgtttgcta tactgagtac
     1801 gatctgatag tttcctatct ttggg
//
LOCUS       DATABJ010000206         1801 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1666231, whole genome shotgun sequence.
ACCESSION   DATABJ010000206 DATABJ010000000
VERSION     DATABJ010000206.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1801)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1801)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1801
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1666231"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..165)
                     /locus_tag="VHF44_03395"
     CDS             complement(<1..165)
                     /locus_tag="VHF44_03395"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2124629.1"
                     /translation="MNNNNRILVVDDEPDLTQVSALALEYHGYKVDSFNDPQEALSKF
                     KPGSYDLIILD"
     gene            complement(169..>1801)
                     /locus_tag="VHF44_03400"
     CDS             complement(169..>1801)
                     /locus_tag="VHF44_03400"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2124630.1"
                     /translation="TYVAIGVEVFKKGLYELKKRNVKSRFVTDITKDNIKYCKELMQI
                     SELRHLDGVKGNFAVSEKGYTASATLQEASLLQQVIYSNVRSILDQQQYVFETLWSKA
                     KPAEQKIREIEEGIDLGETEIIQNPKKILELFINMIKSAKSEILLLLPTINAFLREER
                     IGAIELLKESAAENNVNVRIITPSNDDIEKTLQNIASVAVRKEQQENQKKEKGFEVQR
                     SNIQFKETAMTTVTILVVDKRESLVMEKTDDSKENFIEAIGLSTYSTSEPTVMSYLSI
                     FEGLWRQTKLYEELREANERLQIHDKMQREFINIASHEMKTPTQAILGTSGLLQYYPE
                     RKDELIGVIQRNAKRLQTLIANILDVTRIESQTLILNKERFNIHDVISSLIEDHKDRT
                     KNSNIELINKNNNNNKPIFVEADKDRIIQVLCNLLSNAIKFTNQGKISINLFEKNDDN
                     HEEDGKRKEVIVRVTDTGSGINSEILPRLFSKFASKSYQGTGLGLFICKSIIEAHGGR
                     IWAENNDVSEDKSGGATVTFSLPGASDINIADGDA"
BASE COUNT          468 a          365 c          266 g          702 t
ORIGIN      
        1 atcaaggata atcaaatcat acgaacctgg cttgaatttt gataatgctt cttgtgggtc
       61 attaaatgaa tcgactttgt atccatgata ctccaaggcc aaggcagaaa cctgggtgag
      121 atcaggttca tcgtctacaa ctaaaattct attattatta ttcatagctt aagcatctcc
      181 atcggctatg tttatgtcgc tggcaccagg gagactaaat gtaacagtag cgccaccact
      241 cttatcttcg ctgacatcat tgttttcggc ccatatcctt ccaccatggg cttctataat
      301 acttttgcag ataaacaaac ctaatccggt accttgatac gactttgaag caaatttaga
      361 aaatagcctt ggtaatattt cactatttat tccactacct gtatcagtaa cccttacaat
      421 gacttctttt cttttcccat cctcctcgtg gttatcatca ttcttttcaa ataaattaat
      481 agatattttc ccttgatttg taaacttgat cgcattgctt aacagattgc agagaacctg
      541 aattatccga tctttatctg cttctacaaa aataggttta ttgttattat tatttttatt
      601 gattaattcg atattgctat tttttgtcct gtctttgtgg tcctctatga gagatgatat
      661 tacgtcatgg atattaaatc gctccttgtt tagtattagt gtctgacttt caattcttgt
      721 gacatctaat atgttagcaa tgagtgtctg gagtcttttg gcatttcttt gtattactcc
      781 tatcaattca tcttttcttt ctggataata ctgcaacaac ccactagttc caagaatggc
      841 ttgcgtaggt gttttcatct catgacttgc tatattgata aattctcttt gcatcttatc
      901 atgaatctgt agtcgttcat ttgcttccct taactcttca tacaattttg tttgcctcca
      961 caaaccctca aagattgaaa gataggacat aactgttggt tcactagtag aataagtgga
     1021 caatcctatt gcttcaataa agttctcttt agaatcatct gtcttttcca tcaccaaaga
     1081 ttctcttttg tcaacaacta gtatggtaac tgtagtcatt gcagtttctt taaactgaat
     1141 attgctacgt tgtacttcaa aacctttctc tttcttctgg ttttcttgtt gctcttttct
     1201 cactgctaca gatgctatat tttgcagtgt cttttcaata tcatcgttac ttggagttat
     1261 gattctaaca tttacattat tttctgccgc tgattccttt aaaagttcta ttgcacctat
     1321 acgctcttca cgaagaaagg cattgattgt aggcagcagt agcagtattt cacttttggc
     1381 tgattttatc atgtttatga ataattcaag tatttttttt ggattttgga ttatctctgt
     1441 ctctcctaag tcaatacctt cttcaatttc tcttatcttt tgttctgcag gttttgcttt
     1501 actccataaa gtttcaaaca catactgctg ctgatcaaga atcgatctaa cattgctata
     1561 tattacttgt tgcaatagag atgcttcctg caacgtagcc gaagccgtgt accctttttc
     1621 acttactgca aaatttccct taactccatc aaggtgacga agttccgata tttgcattaa
     1681 ttctttacaa tacttaatat tgtcttttgt gatgtctgtt acgaatcttg acttgacatt
     1741 ccttttttta agttcataaa gtcctttctt aaatacttct acaccgattg ctacgtatgt
     1801 c
//
LOCUS       DATABJ010000207         4140 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_811935, whole genome shotgun sequence.
ACCESSION   DATABJ010000207 DATABJ010000000
VERSION     DATABJ010000207.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4140)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4140)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4140
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_811935"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1353
                     /locus_tag="VHF44_03405"
     CDS             <1..1353
                     /locus_tag="VHF44_03405"
                     /inference="COORDINATES: protein motif:HMM:NF014411.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase"
                     /protein_id="HEX2124631.1"
                     /translation="VLSIVVGTKPDFYKQAPIVVEAIKEKVPVFVIDTGQHFDELLGF
                     GIKEFDLENTVGCNLQIRGDLMEKASELILKFGSFGRYCANQFGIDSQLLPVVHGDTL
                     VAGIAPLAWVFGMGQKVAQNEAGLRSMSPQAMKHLKIHQEPTKSIIEQFIADQFQGEW
                     FLAREEPFPEQIDTWICSAGTKYFFAPTQLNKDNLVREGYPEELVYVVGNSVVDAIHL
                     KRREKSVESSIFDIYPKLENGQWIRMDIHRRENLTRHRFTSIINGLINLIEKTEHKVV
                     LVMLNATASALKSYNLQEKIYNLSIDFPDKFIITPLWREYAHVIEFLDSGHCWAEMTD
                     SGSMQEELLYFPEVLSLTVRLNTDRPETIVEAKSNILIPPVNPSWITSIVKEAFDKNQ
                     SLGFNLKNKKPIYGQPGNVSSNIVKIIKKEFENGNASFYPWLHQRINLWKEDRGLDYL
                     "
     gene            complement(1535..2245)
                     /locus_tag="VHF44_03410"
     CDS             complement(1535..2245)
                     /locus_tag="VHF44_03410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase family protein"
                     /protein_id="HEX2124632.1"
                     /translation="MKAVILAGGLGTRLQPYTFFIPKPMLPIGNKPLLEHILEWLKQN
                     NAIDQIVICVSYLHRIIEDYFEDGGRFGIKIQYARSERPLATAGQLKSAEKLLNETFV
                     CLYGDSIYEFSLEKMIDEHKESKAFVSMALLSYKTNLKYGFIDVDGKEDRITSWREKP
                     EVSGLINIGCYVIEPSFLNIIPNSSAFGMDDAVRIALEEKRVVKGFRIGSSGFVDIGD
                     KKSYLEVYRRYVRKLGKI"
     gene            complement(2289..3653)
                     /gene="thiD"
                     /locus_tag="VHF44_03415"
     CDS             complement(2289..3653)
                     /gene="thiD"
                     /locus_tag="VHF44_03415"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: protein motif:HMM:TIGR00097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008902 - hydroxymethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_function: GO:0008972 - phosphomethylpyrimidine kinase
                     activity [Evidence IEA];
                     GO_process: GO:0009228 - thiamine biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEX2124633.1"
                     /translation="MDIYKPIMPRVALSIAGSDSGAGAGIQADLKTFSALGVYGCTVI
                     TAITAQNTREVTSVFDLPDDIIRKQIQSIMSDIPLNAIKIGMVHRKEIIQSIHDSLMR
                     TKIPIVLDPIFAAGSGSRLLSDDAFESLVSELVPIATLITPNLMEAEKLAGIKIKSEG
                     DAIEAARKIKKLGAKSVIIKGGHSNTNKVTDILFHGKETVYRLSNTRVAVKESHGSGC
                     NFSAGITALLARGFQLVDACKIANQYVHESIENALKLGKGLVVTNPISHLYVDASRYH
                     VLKELQLATIEIEAMNGIAELLPETQSNIAYALPDAVDTSDIAGVKGRIVRIGKIARP
                     VSNIEFGASRHVASAVLAYMTINRSMRCAMNIRYDKTLLKIAKRLFEISEYQRINEPL
                     SLKKKEGKTIFWGIKTALISNPAAEIVYHKGEVGKEPMMMIFGTEPKDVLKKIKKILN
                     NIEK"
BASE COUNT         1278 a          785 c          724 g         1353 t
ORIGIN      
        1 gtcttatcca tcgtcgttgg aaccaaacct gatttttata aacaagcacc aattgtggta
       61 gaagcgataa aagagaaagt acctgtattt gttatagata ccggtcagca ttttgacgaa
      121 ttgttaggtt ttggtataaa agaatttgat ttagaaaata ctgttggctg caatttgcaa
      181 attcgtgggg atctgatgga gaaagcgagc gaactaattc ttaaatttgg atcgtttggg
      241 agatattgtg ccaatcaatt cggcatagat tcacaattgc ttccagtcgt ccatggagat
      301 actctcgttg ctggaatcgc tcctctggct tgggtttttg gtatgggaca aaaggtggca
      361 cagaatgagg ctggattgag atcaatgagt ccccaggcaa tgaagcattt aaaaattcat
      421 caagaaccga cgaaaagtat tattgaacag ttcattgctg atcaatttca aggtgaatgg
      481 tttctagcaa gagaggaacc atttccagag caaattgata catggatttg ttctgcagga
      541 acaaaatatt tttttgcgcc aacacagctc aataaagata atcttgttag ggaaggatat
      601 cctgaagaat tagtttatgt tgtaggtaat tcagtagttg acgcaatcca tttaaaacgc
      661 agagaaaaat ctgtggaaag tagtatattt gatatttatc caaaattaga gaatggccaa
      721 tggataagaa tggatatcca taggcgcgag aatcttaccc gtcatagatt tacatctatc
      781 attaatggac ttatcaacct gatagaaaag acagaacaca aagtagttct tgtaatgctc
      841 aatgctactg cctctgcttt gaagtcatat aatctacaag aaaaaatata taatctttct
      901 atagacttcc ccgataagtt tatcattacc ccactgtgga gagagtatgc acatgtcatt
      961 gaattccttg atagcgggca ttgctgggca gaaatgactg actctggctc tatgcaggaa
     1021 gagctgctat attttcctga agtattatca ttaaccgtga gattaaatac tgacagacca
     1081 gaaacaatag ttgaagcaaa gagcaacatc cttattccac ctgtaaatcc atcttggatt
     1141 acctctatag ttaaagaagc gtttgataaa aatcaaagtc taggtttcaa tttaaagaat
     1201 aaaaaaccca tttatggaca acctggtaac gtatcaagta atattgtgaa gatcattaag
     1261 aaggagtttg aaaatggcaa tgcgagcttt tatccgtggc tccatcagag aattaatctc
     1321 tggaaagaag atcgtggact agattattta taagactgtt gacataagcc cttctccgtc
     1381 atacattttc ctcaataacc aaaaaaacat catgttgtgt tggctatact tttccttaaa
     1441 aagatcttat aatcatccgt ctcaaccaaa aatattctcc tcgttagaaa tttcaaagta
     1501 aaagccatct agacagagga gcttattatc cttcctatat cttacccaat tttctaacat
     1561 atcttctata tacctcaaga taagatttct tatcacctat gtcaacaaag cctgatgacc
     1621 ctattctaaa tccttttacg actctctttt cttcaagagc tatccttact gcgtcgtcca
     1681 ttccgaatgc actagagttg ggaataatgt tgaggaaaga tggctctata acataacagc
     1741 cgatgttgat taggccacta acctcgggct tttctctcca acttgtgatt ctgtcctctt
     1801 ttccgtcaac atctataaaa ccgtacttga gatttgtctt ataagataat aatgccatcg
     1861 aaacgaaagc tttcgactcc ttatgttcat ctatcatctt ttcaagactg aattcgtaga
     1921 ttgaatctcc atacaaacat acaaaagtct catttaacaa tttttctgca ctcttcaatt
     1981 gtcctgctgt agccaaaggt ctttctgacc tagcatactg tatttttatg ccaaatctac
     2041 ctccatcctc gaaatagtcc tctattattc tgtggaggta acttacgcaa ataactattt
     2101 gatctatagc attgttctgt tttagccatt caagtatgtg ctctagaagt ggcttatttc
     2161 ctattggcaa cataggttta ggaatgaaaa aagtatatgg ttgcaatctg gttcctagac
     2221 ccccagcaag gattactgct ttcatatctc atcgtcattc ttaatgactg ctatataagg
     2281 tagaatcatc acttctcaat attgttcaat atttttttta ttttcttcaa aacatccttt
     2341 ggttctgtgc caaagatcat catcatcggc tctttaccaa cttctccttt gtggtaaaca
     2401 atttctgcgg caggattgct tataagtgcg gtcttaatac cccagaatat tgtcttacct
     2461 tcttttttct tcaaactcaa gggttcatta attctttggt attcagaaat ttcaaataaa
     2521 cgtttagcga tttttaataa tgttttatca tatcttatgt tcatggcgca cctcatagaa
     2581 cggttgatag tcatataggc taggactgca gaagcaacat gtcttgaggc accaaattct
     2641 atatttgaga caggcctagc aatcttacca attctaacta ttctgccttt cactccagcg
     2701 atatcggaag tatcaacagc atcaggcaga gcgtaggcta tattagattg tgtttcaggt
     2761 agcaattctg caattccgtt cattgcctcg atttcaatgg ttgctagttg tagctctttt
     2821 aatacatgat atcggcttgc gtctacatac aaatgagaaa tcgggttcgt aactacaaga
     2881 ccttttccca attttaaggc attctcaata gattcatgta catactgatt tgcaatctta
     2941 caagcatcaa ccagttggaa accccttgct aaaagggctg tgatacctgc tgaaaagtta
     3001 cacccagaac catgagattc cttaacagct actctcgtat tagagagtct gtacactgtc
     3061 tcttttccat ggaataaaat atctgtgacc ttgtttgtgt ttgaatgtcc tccttttatt
     3121 ataacgctct ttgcacctag tttttttatt tttcttgccg cttcaatagc atctccttca
     3181 gatttgattt tgatacctgc taatttctca gcctccatta ggtttggtgt aattagagtt
     3241 gcaatgggga ctaattcaga gactaatgac tcaaaagcat catctgagag taatctcgat
     3301 ccgcttcctg ctgcaaaaat cggatctaat acgatgggaa ttttcgtacg cattaatgaa
     3361 tcatgaatag attgaatgat ttcctttctg tgaaccatcc ctatttttat tgcatttaga
     3421 gggatatctg acatgataga ttgaatctgt tttctgatga tatcgtcagg gaggtcaaat
     3481 acgctggtaa cctctcgagt attttgagca gttatagcag taatcacggt acagccatat
     3541 acaccaagag cagaaaatgt tttaagatca gcctgtattc ctgctccagc acctgaatca
     3601 cttcccgcaa ttgacaatgc aacccttggc ataattggct tatagatatc cataaacgcc
     3661 tattcagttt atcgggtgtt tgcttcattg ccttcaaatt attcattaat tataataaaa
     3721 atgagtccaa tttatctgaa taataccttt tccattgatg ttgtataata tcatagggat
     3781 ctaaagaaaa gagcataact atatttgcat gacttggatt atatatttat ataaagacgt
     3841 ctcaccagca taaataccac agatagatac ttttagtata ataattataa taagtattca
     3901 cagatattat gtgttttttt acttaaaacg aggtacgaaa ataatgcctg taattctatc
     3961 gtcaataatc actgaagcaa cactttttca gatttacctt ctatataaca ggcatattgt
     4021 gaggatcctc aaaaagatta aaaggatggc aaaacaaata agctagagaa cgatgcgcat
     4081 agttgcaata ggaagtcgag tatttgttac tagttttcag cttgcaggtg tacaaggaat
//
LOCUS       DATABJ010000208         4123 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1907832, whole genome shotgun sequence.
ACCESSION   DATABJ010000208 DATABJ010000000
VERSION     DATABJ010000208.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4123)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4123)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4123
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1907832"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..336
                     /locus_tag="VHF44_03420"
     CDS             <1..336
                     /locus_tag="VHF44_03420"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003999 - adenine
                     phosphoribosyltransferase activity [Evidence IEA];
                     GO_process: GO:0009116 - nucleoside metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEX2124634.1"
                     /translation="ATALALKFGKGLIMIRKAGKLPGHTLKESYDIEYGNAVMEIQKD
                     AIKPGQNVLIADDLIATGGSAVAAARLVEKLGGSVTGFAFVIELDNLDGANKLRTLGY
                     NVQSLVVYK"
     gene            333..1139
                     /locus_tag="VHF44_03425"
     CDS             333..1139
                     /locus_tag="VHF44_03425"
                     /EC_number="2.4.2.28"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-methyl-5'-thioadenosine phosphorylase"
                     /protein_id="HEX2124635.1"
                     /translation="MTSNKYSADIGLIGGTGIYDSGILNDKKEIKIHTPYGEPSDSIT
                     IGKLSERNVAFIPRHGKNHRIPPHRINNRANIWALKELGVTRIIAPSAVGSLQKEFKP
                     GDIAIPDQFIDFTKGRQYTFYDGGKVCHISSSDPFCAELKELTVECANKLNYKIHDNV
                     TYVCIEGPRFSTRAESLFFREVMKAHIIGMTVVPECILAREAEICYVSIATITDYDAW
                     TDFPVSSNKIIEILQKNIEKTKKLVEQLIPVIENKRDKCACGNALEGALL"
     gene            complement(1143..1448)
                     /locus_tag="VHF44_03430"
     CDS             complement(1143..1448)
                     /locus_tag="VHF44_03430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124636.1"
                     /translation="MMVEDIQTDERIPVTIFVKNARGSNIASKLTGHFLVNDKQFRFT
                     AVAFGRIGGHNIALTISKKTLNTISKMGIEPDVLQLTIQRKLIEGDIILPKGLKIHD"
     gene            complement(1445..1867)
                     /locus_tag="VHF44_03435"
     CDS             complement(1445..1867)
                     /locus_tag="VHF44_03435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124637.1"
                     /translation="MTTPEPIGEDRVVYFGVINLNENGRTVGAIDIWRNVITKQLFCE
                     EKRLGILEISDNIGMPRIDKDKKWAVAINRKKPGNERWKLIKIIRQGNFKFTETDDET
                     TVEVDVKDYRIMDPDWWNFLVENNINRSIEITEQKNAK"
     gene            complement(1897..2256)
                     /locus_tag="VHF44_03440"
     CDS             complement(1897..2256)
                     /locus_tag="VHF44_03440"
                     /inference="COORDINATES: protein motif:HMM:NF014080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2124638.1"
                     /translation="MAANIDNIEEELVCELKISIEEAKVFVSIVKNGMMDPQDISNLL
                     GYSVQDAKKIAESLINKGMIIDFTATEYESLHPRFAITNRYKKRCQEDNIVFKKNLKV
                     DNIGKSLERPYDHARTK"
     gene            2479..3309
                     /locus_tag="VHF44_03445"
     CDS             2479..3309
                     /locus_tag="VHF44_03445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEX2124639.1"
                     /translation="MTSGLENMNIDEFVDAEEIFFELASQQRLSIIFDLYKKKSKLSD
                     LSKDLRITMQEVHRNVNRLQDAGLVEKDSDGIFSLTTFGNTIIKQIPSFDFLSRHKEY
                     FSEHTLGELPMKFVQRIGALNNCELVRGIVAILEFWKQIYRESENYIFEIIPQVPLDL
                     IEPILFNVRDRGIRLCYIFPTDVIIPKGRIELLKRLRFDELYNTGRIGRRMVDKVQVA
                     VVINEKKASVLFPTQKGETDMNWMFYSEDQLFHDWCLDYFWFRWYGSKSFEEDKLREI
                     "
     gene            complement(3323..3829)
                     /locus_tag="VHF44_03450"
     CDS             complement(3323..3829)
                     /locus_tag="VHF44_03450"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: protein motif:HMM:NF002207.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit K"
                     /protein_id="HEX2124640.1"
                     /translation="MVLKDSSHDKSQSKKPLNLKEKSMKKVDSKVKKSTSSKSSKRSL
                     ETNQSVDDSRQTTVQVVDSLKSTRPEDEVVTYTEIDFELREIAAKGNQVLIGPHRLTR
                     FERARITGARSLQLSLGAPSLIRIPNDVRDSISLAIAELDLKALPISIRRVLPNGIYQ
                     DIPIDWMK"
     gene            3941..>4123
                     /locus_tag="VHF44_03455"
     CDS             3941..>4123
                     /locus_tag="VHF44_03455"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124641.1"
                     /translation="MDKIQTAGSVSRIPMTIQIVDKGIAPCELIRHLSPLCVRTILNS
                     LPLQDRIHKFSESIIYI"
BASE COUNT         1296 a          709 c          730 g         1388 t
ORIGIN      
        1 gcgacagcgt tagcattaaa atttggtaaa ggtttgataa tgattcgaaa ggcaggtaag
       61 cttcccggtc atactctcaa ggaatcatat gatatcgaat atggtaatgc tgtaatggaa
      121 atacaaaaag atgctataaa accaggccaa aatgtcttga tagccgatga cctgattgca
      181 acaggtgggt ccgccgttgc tgcagcacgt cttgtcgaga agttaggagg cagcgttaca
      241 ggatttgcat ttgtgataga actagataat cttgatggag cgaataagtt aaggacgctt
      301 ggctacaacg tgcaatcatt agtggtgtac aagtgacatc taataaatac tctgcagata
      361 tcggccttat aggaggtaca ggaatttatg attctggaat cctaaatgac aaaaaagaaa
      421 ttaaaattca tactccttac ggtgaaccgt cagattcaat tactattggt aaattgtctg
      481 aacgcaacgt cgcttttatt cctagacatg gaaaaaacca tcgaattcct cctcatcgga
      541 taaataatcg tgcgaatatt tgggcattga aagaacttgg agtgacaaga attatcgccc
      601 catctgcagt aggaagttta caaaaagaat tcaagccagg tgatattgct atacctgatc
      661 aattcattga cttcacaaag ggaagacaat atacttttta tgatggtggg aaggtttgtc
      721 atatctcttc ttccgatcca ttctgtgcag agctaaaaga gctaactgta gaatgtgcta
      781 ataaattgaa ttataaaatt catgacaatg ttacatatgt ttgtatagaa ggaccaagat
      841 tctctactcg agcggaatct ctttttttta gagaagtaat gaaagcacac ataattggga
      901 tgacagttgt tcctgagtgc atactggcga gagaggcaga aatttgttat gtctcaattg
      961 caactatcac ggactatgat gcatggaccg actttccagt aagttctaac aagataatag
     1021 aaatattgca aaagaacatc gaaaagacta aaaaattggt tgaacagttg ataccagtaa
     1081 tagagaataa aagggataaa tgtgcctgtg ggaatgcgct tgaaggagca ttgttataag
     1141 gatcaatcat gtatttttag acctttggga agtataatat ctccttcgat tagtttgcgt
     1201 tgtatcgtta attgcaatac atcgggttct attcccattt tgcttattgt atttaaagtc
     1261 ttttttgaaa tagtaagtgc gatgttatgc ccacctattc tgccgaatgc tactgcagta
     1321 aatctaaact gtttatcatt gacaagaaaa tgccctgtca acttgctggc aatattactg
     1381 cctctagcgt ttttaacaaa aatagttaca ggaatccttt catcggtttg tatatcttca
     1441 accatcattt tgcgtttttc tgctcagtaa tttctatgct tcgatttata ttattctcaa
     1501 caagaaaatt ccaccaatct ggatccatta ttctatagtc tttgacatca acttcaactg
     1561 tcgtttcatc atcggtttca gtaaatttga aattaccttg tcttattatt tttatcaatt
     1621 tccatctctc attgccgggt ttcttcctat taattgcaac agcccatttt ttatccttat
     1681 caatccttgg catacctata ttatctgaga tttctaaaat ccctagtctt ttttcttcac
     1741 aaaatagttg ttttgttatg acgtttcgcc atatatcaat ggctcctacc gttctaccgt
     1801 tttcattaag gttaataaca ccaaaataaa caaccctatc ttcacctatt ggctctggtg
     1861 tagtcatacg ccttgtatta ctgcagataa atgaccttat ttagttcttg catgatcata
     1921 aggtcgttct agcgatttcc cgatattatc aactttcaaa ttctttttga aaacaatatt
     1981 atcttcctgg cacctttttt tatatctatt agttatagcg aatcgaggat gcagtgattc
     2041 atattctgtc gcggtgaagt cgattatcat tcccttatta atgagagatt ctgctatttt
     2101 tttcgcatct tgaacagaat agcctaggag gttggatata tcttgaggat ccatcatacc
     2161 attttttaca attgaaacaa atacctttgc ttcttctatt gagattttta attcgcaaac
     2221 gagttcttct tcaatattgt caatatttgc tgccaaacac taaatgttat tgatatcgat
     2281 gatattaaaa tgattctatt gataatattc tgcaattata atcaaattat gagattacta
     2341 tcagagctca tttataaaga aataatcaaa cagtgttagg caataaaagt aattaagcct
     2401 caacaagttt ccatatagac tgttgcctaa gtatatgcat aatgcttatt gttgtgtaat
     2461 agatctttaa cattaattat gacctctggc ttggaaaata tgaatattga tgaatttgtt
     2521 gatgctgaag aaattttttt tgagcttgcc agccaacaaa ggttgtcgat aatattcgat
     2581 ctctacaaaa agaaatctaa gctctctgat ctttccaagg accttagaat aactatgcaa
     2641 gaagtgcata gaaacgttaa cagactacaa gatgcaggac tagtagagaa agattcagat
     2701 ggaatttttt ctttaactac atttggaaat acaattatca aacaaattcc ttcctttgac
     2761 tttttgtcac gacataaaga atatttttct gagcatacat taggcgaact tccaatgaaa
     2821 tttgtacagc gcataggtgc ccttaataat tgtgaattgg taagagggat tgttgctatt
     2881 ttagaatttt ggaaacagat ctacagagag tctgaaaatt acatatttga aataatcccg
     2941 caggtgccac ttgatctcat agaacctata ttatttaatg ttagagatag aggaataaga
     3001 ttatgttata tatttccaac agatgttatt attccaaaag gaagaatcga acttctaaag
     3061 aggctaagat tcgatgaact ctataatact ggtagaatag gaaggcgtat ggtagataaa
     3121 gttcaggttg ctgtagttat taatgagaaa aaagcatcag tactttttcc aactcagaaa
     3181 ggtgaaactg acatgaactg gatgttctac agtgaagatc aattgtttca cgactggtgt
     3241 cttgactatt tctggttcag atggtatggt tccaaaagct tcgaggaaga taaactcaga
     3301 gagatatagc aagataataa attcatttca tccagtcaat cggtatgtct tgatatatac
     3361 cattaggcag gacccttcta attgatatcg gcaatgcctt caaatctaat tctgctattg
     3421 ctaatgaaat agaatctctt acgtcatttg gtattctaat taatgacggt gctcccaaag
     3481 atagctgcag agatctcgcc cctgtaattc ttgctctttc aaatcttgtc agccggtgtg
     3541 gtccaattag aacctgatta cctttcgcag ctatttctct tagttcaaaa tcaatttcag
     3601 tatacgtaac tacttcgtct tctggacggg tagatttaag tgaatctact acttggactg
     3661 tagtctgtct gctatcatca acggactgat ttgtttctaa tgatctcttt gaacttttac
     3721 tggatgtact cttttttacc ttggaatcta ccttcttcat gcttttttct ttaagattca
     3781 atggtttttt tgactgggat ttatcatgtg aagaatcttt taataccaag aatactgcaa
     3841 cagatattaa atatacaaat aaatgttgct aatccttcaa aggagtcaaa acagagaatt
     3901 atacgttttg attatatact atttttaata attctagaga gtggataaga ttcagacagc
     3961 cggttcagtt tcaagaattc ctatgactat acaaatagta gataagggaa tagctccatg
     4021 tgagctgata cgtcatctct ctccattgtg tgttagaacg attctgaact cccttcccct
     4081 gcaggacaga attcacaagt tttcagaatc aataatatat att
//
LOCUS       DATABJ010000209         2709 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1908006, whole genome shotgun sequence.
ACCESSION   DATABJ010000209 DATABJ010000000
VERSION     DATABJ010000209.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2709)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2709)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2709
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1908006"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            807..1871
                     /locus_tag="VHF44_03460"
     CDS             807..1871
                     /locus_tag="VHF44_03460"
                     /inference="COORDINATES: protein motif:HMM:NF013382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:0008757 - S-adenosylmethionine-dependent
                     methyltransferase activity [Evidence IEA];
                     GO_process: GO:0032259 - methylation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2124642.1"
                     /translation="MSIGQLTLKGKLDSVLQHPSILKDFLAGKSSEEIRDKILELRRM
                     KVEKRAEKEVFEFIKQLKTNSAHEINSTQKLKLNKLCYIEDWQNDELRQLISELQKPD
                     QLSLSNDILMRERDFIHRKDWEWAMSLVAMRRFGKLNKNSTALGVGAGKEILLFYLAN
                     HLEHVYATDLYAGDWTKVWAPPDMIKNAKRYAPFEYNESALTVMRMDSTKLEFPSETF
                     DIAFSISSIEHFGGKNHSGALRSLKEIERVLKRGGIATITTEYILNDKEAPGLQNQFF
                     NRRTIYSNLIDKLEGLQLVEPLDLSITPNTLDTVMDARDAVKWDTNIFSNEYKKMHPL
                     ILLRTGNILLTSVMLVFQKQ"
     gene            1892..2104
                     /locus_tag="VHF44_03465"
     CDS             1892..2104
                     /locus_tag="VHF44_03465"
                     /inference="COORDINATES: protein motif:HMM:NF016908.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FkbM family methyltransferase"
                     /protein_id="HEX2124643.1"
                     /translation="MDVEGAEYEVLKGAKEILSASKDISILVEVHGKDTYGPTTELLR
                     SNNFNIEFEKTYDNGEKHVLARKLYY"
     gene            complement(2267..>2709)
                     /locus_tag="VHF44_03470"
     CDS             complement(2267..>2709)
                     /locus_tag="VHF44_03470"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124644.1"
                     /translation="HGLLDARLYALMVPSSASPPTVFEEFCQLILGVDESIRFVGIAS
                     LNGAILAMKYRANLIPLLTQEETTSSIKYSVWRMESRRILEEKLGKTLYVVATYEKLK
                     RATIPVGQDGQSILIISFDIESDVESIIRNKILKIIKPYGTITH"
BASE COUNT          942 a          461 c          532 g          774 t
ORIGIN      
        1 cgacagaatt gctcagatcg aacaatttca aaatagaatt tgaaaaaaca tatgataatg
       61 gcgaaaaaca tgtgcttgca agaaaaatat cttatacata aagacacacc aacatagcag
      121 gcagggatgt actcgttaga gataagatta tgacttcacg tcacaggtat tgccaagaat
      181 ctacatacga ggtattgcgt ttaatactaa tctcttctac aagacaacag aaattattgt
      241 cagttcatac tatatgttcc agtaggaaca atatagcact gatagcgcct gtgacatctg
      301 gcagcacgaa cgtaatattc ttccaataag cgcgaatagc ttctagtagt ttcgagaaca
      361 tgaaaatata gatgaacgcg ctgactacgg tggggagcat gtgcatgtat ctgactatta
      421 tcccgctaaa cagaaacagg ggtgatctct tgatttgagt aagaatagaa agaaaaaaca
      481 tacacctttc ccggccgctt gcgggatcaa gatctgaaag acgaattaca aattctgtgt
      541 tatgaattgc ctatcggtaa acgtcgagat cgcaggagct ttattgaatt tctgatctat
      601 tctgtagaac tgttgttatt gttacaattt gaccctaata ctgaattggt gactacaaaa
      661 atcgcagtac cgaatcacct aaccgacaga taattctatt ttctgcaatt ggagtctctg
      721 gttgcagcgc ctttcaaaat gttcacatct ttttacatga gcatgacaag tctccattcg
      781 caaagaatta ttaatgaaca ttctagatga gtataggaca attgacgcta aaaggtaagc
      841 ttgattcagt cttacaacat ccatcaatat taaaagattt tttggcaggc aagagttcag
      901 aagagatacg agataaaatc ctagaattgc gtcgtatgaa agttgaaaag cgtgctgaaa
      961 aagaagtctt tgaatttata aaacaattga aaacaaattc agcccatgaa ataaattcta
     1021 ctcaaaaact gaagttaaat aagctatgtt atattgagga ttggcagaat gatgaattaa
     1081 gacaactaat ttctgaatta caaaagccag atcagctaag ccttagcaat gatatactca
     1141 tgcgggagcg tgattttatt cataggaagg attgggaatg ggcaatgagt ttggtagcaa
     1201 tgagaaggtt tggtaaatta aataaaaata gtactgcact tggtgttgga gcgggaaaag
     1261 aaatactcct attttactta gcaaatcatt tagaacatgt atatgccacc gatctttatg
     1321 ctggcgattg gacgaaagta tgggctcccc cagatatgat taaaaatgca aaaaggtatg
     1381 caccttttga atataacgaa agtgcattaa ctgttatgag aatggatagt accaaactcg
     1441 aattcccatc agaaacattt gatattgcat tctcaatttc gtcaatagag cattttggag
     1501 gcaaaaatca ttcaggtgca ttacggagct taaaagaaat agaacgagtt ttaaagcgag
     1561 gaggtattgc cactataaca acagaatata tacttaatga taaagaggct cctggtttgc
     1621 agaaccaatt cttcaataga aggacaatat attctaatct aatagataaa ctagaagggc
     1681 ttcaattggt ggaacctctt gatctaagca taacaccaaa taccttggat acagtcatgg
     1741 atgctagaga tgcagtaaaa tgggacacta atatattcag caatgaatac aaaaaaatgc
     1801 atccccttat ccttcttaga accggaaaca tattacttac gtcagtaatg cttgtctttc
     1861 aaaagcaata aatcaagtta attggattaa aattgatgta gaaggagcag aatatgaagt
     1921 acttaaagga gccaaagaga tattgtctgc tagcaaagac atctcaattc ttgtagaggt
     1981 ccatggtaaa gacacttatg gtcctacgac agaattgctc agatcgaaca atttcaacat
     2041 agaatttgaa aaaacatatg ataatggcga aaagcatgtg cttgcaagaa aattgtatta
     2101 ttgacagaaa taataagaaa catgagacgg gtaacacagt atggagaagg tgcatatttg
     2161 ttacagatcc attcttggtt cttaatatcg ctaatttctg aatgtgaagt agagagatgc
     2221 ctgttagctt tgaaccggtg ttttgtctcc cttttcacta taacagctag tgagtaatag
     2281 tcccatatgg cttaataatt ttcaaaatct tgttgcgaat tattgattcc acgtcagact
     2341 caatatcaaa tgatatgatt aaaatggact ggccatcttg tcctacggga atagttgctc
     2401 gctttaattt ttcataagtt gcaactacat acagggtctt gcctagtttt tcttcgagga
     2461 ttcgtctact ttccatccgc caaacggaat atttgataga cgatgttgtt tcctcttgag
     2521 tcagtaaggg tatcaaattg gctcggtatt tcatcgctaa gatggctcca tttaaggatg
     2581 caatgcctac aaacctaata gattcgtcca cgcccaatat taactgacaa aattcttcaa
     2641 agacagtagg tggagaggcc gatgaaggga ccattagtgc atagagccta gcatcaagta
     2701 gaccatgtt
//
LOCUS       DATABJ010000210         1785 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1667986, whole genome shotgun sequence.
ACCESSION   DATABJ010000210 DATABJ010000000
VERSION     DATABJ010000210.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1785
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1667986"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            42..371
                     /locus_tag="VHF44_03475"
     CDS             42..371
                     /locus_tag="VHF44_03475"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124645.1"
                     /translation="MSFPKKVRIDFMLSKIDIDGNEISEEELRKAMLEISDRYGGSTA
                     LEASEGRYINKEGVNKTEKILSFYVVTSRQPATLERDLPNYKRELERRFNQEKILITF
                     HDVTEVG"
     gene            741..1490
                     /locus_tag="VHF44_03480"
     CDS             741..1490
                     /locus_tag="VHF44_03480"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024950.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2124646.1"
                     /translation="MKQESKKTAIITGSGRGIGKETAIILAKKSVNVVVCSRTRSEIN
                     STVEEISKLTSNSSVLGIKCDVSIPSEVNSLIKSAIEKFESETIDILVNNAGVAFNRK
                     LVDTSDEEWDQTININLKGAFLFAKAVLPYMISRRSGVILNVNSGAGKMGFIDLSAYC
                     ASKFGLVGLTESLALEVNEYRNIRVLTLFLGEVATKMWQEYDFSYYQRNKTKMLQPKD
                     VAVKIAEMIFDVKTYKNGDSVEMYNNNNNII"
BASE COUNT          646 a          286 c          342 g          511 t
ORIGIN      
        1 tggctacaca ttagtgtatt gcgcatcgga gagaactgac tttgtcgttt cccaaaaaag
       61 taagaataga ttttatgttg tctaaaatag acatagatgg aaatgaaata tctgaggaag
      121 agcttagaaa ggcaatgtta gaaatctcag atagatatgg gggttcaact gccctggagg
      181 ctagcgaagg acgctatatc aacaaagaag gtgttaataa gactgaaaag attctaagct
      241 tttatgtagt gactagtaga caacctgcta cgcttgaacg ggatctgcct aattataagc
      301 gcgagcttga aagacgattt aatcaagaaa aaattttaat cacatttcat gatgttacag
      361 aagttggcta atcttcattg tgatgttgtg tatttaacta gattaataca tatgttccta
      421 gaaccaaaat gtgacagcaa tcaaggaatt gcgtatcatg atgttgccct aaagtaagcc
      481 cattatccct gagccggtat tcacatatct taatttgatc ttttctgaat atgtcgaggt
      541 gagcattgca ctactgaaag caattctatg acaaaatctt tcctggtgat acaaaaatgt
      601 caagtatatt gaccatggat ttacaagaaa gtttcttgtt cgcataagca acttttccca
      661 atattcacac aattatctaa gaaggaaaaa actgaattta tggatgtaat tataataggt
      721 atcagtagag caacaaccat atgaaacaag aatctaaaaa gacagcaatt attacgggca
      781 gtggcagagg tataggcaaa gaaacagcca taatattagc aaaaaagtca gtgaatgtag
      841 ttgtttgttc taggacccga agtgaaataa attccactgt agaagaaatc agcaagctaa
      901 ctagtaattc cagtgtttta ggtataaagt gtgacgtaag cataccttcg gaagtcaatt
      961 ctcttatcaa atccgcaata gaaaaattcg aaagtgagac tatagatatt cttgtaaaca
     1021 atgctggagt tgcatttaac agaaaactag tagatacatc tgatgaagaa tgggatcaaa
     1081 caataaacat caatttgaag ggtgcttttc tttttgcaaa agctgttctt ccatatatga
     1141 tttcaaggcg ctcaggagtc atattaaatg tcaattctgg tgctggcaaa atgggtttta
     1201 ttgatttatc agcttactgt gcaagtaaat ttgggcttgt gggtttaaca gaaagcctag
     1261 cattggaagt taacgaatat aggaatatca gagtgttgac actatttctt ggtgaagttg
     1321 ctacaaaaat gtggcaagaa tatgatttta gctattatca aagaaataag accaaaatgc
     1381 ttcagcccaa agatgtggcg gtaaaaattg ctgaaatgat atttgatgtt aagacctaca
     1441 aaaatggaga ttccgttgaa atgtacaaca acaacaacaa catcatatga gtcgcataaa
     1501 ctgcgattgt aacactatca ctaagctagt tgagccagct ttatcataat ttacaaatgc
     1561 atcctcctct ataacttaga gtaaaccaag aactaaccaa gagttcaata tttgaccacg
     1621 actttattat gctctttcat ttagaacgga agaagagaga tagaagataa atagatgtca
     1681 ccatgcaata aagcaccaaa ttagaaatga ggaagtctac ctttagattc aaatgaattc
     1741 ttattatcca aatcccgacg agctctctgc caaacacaga ctaaa
//
LOCUS       DATABJ010000211         4493 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1909339, whole genome shotgun sequence.
ACCESSION   DATABJ010000211 DATABJ010000000
VERSION     DATABJ010000211.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4493)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4493)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4493
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1909339"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..234)
                     /locus_tag="VHF44_03485"
     CDS             complement(<1..234)
                     /locus_tag="VHF44_03485"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124647.1"
                     /translation="MIDSNAGKGNYRKTSIANACSHGGVHSVNPNLVKIDFSSNVNPL
                     GISKKVIHLLQKNAGFISSTYPDPECKDLRKKLC"
     gene            349..1425
                     /gene="asd"
                     /locus_tag="VHF44_03490"
     CDS             349..1425
                     /gene="asd"
                     /locus_tag="VHF44_03490"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004073 - aspartate-semialdehyde
                     dehydrogenase activity [Evidence IEA];
                     GO_process: GO:0009089 - lysine biosynthetic process via
                     diaminopimelate [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEX2124648.1"
                     /translation="MLKVALIGSTGAVGQEFVIALNKHPWFELTCIASSERSAGKKYV
                     DALRDPNSGILRWHNKEQIPEYIHDMIVSKVEEIDAKKFDLVFTALESDDAKIIEPKF
                     AQSVPVISTAAAFRYENDVPILIPGINDNHIELLNVQRKNRGWNGFISPLPNCTTTGL
                     AITLNPILNAFGIDDVFMTSMQALSGAGRSPGVIALDIMDNVIPYIPKEEEKVQVETK
                     KILGTLNSKSIVPAPVKVSCTCTRVPVLDGHTESVFVKTKNQVEPDKVKEEMLKFSKS
                     ATEKKLPSTPKEYIIVYDDPTRPQPRIDREINDGMTTFVGRLRKDTVFDNGVKYILLS
                     HNEKMGSAKGAVLLAELLKDKEMI"
     gene            1512..1976
                     /locus_tag="VHF44_03495"
     CDS             1512..1976
                     /locus_tag="VHF44_03495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC family transcriptional regulator"
                     /protein_id="HEX2124649.1"
                     /translation="MGRIDDLDLKILSELSKDASISVPRLSKKININASVVYSRIKRL
                     LKRGLIKKFTIVINDEALGFSVRSLTGINMDSKLRDNVLNELFKIPEVREIAEVTGRF
                     DILVTMTARSLDEIHQLISEKVGHVEGVQKTETFIEMRKTAREIIYPTSISK"
     gene            2043..2930
                     /locus_tag="VHF44_03500"
     CDS             2043..2930
                     /locus_tag="VHF44_03500"
                     /EC_number="2.5.1.141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0008495 - protoheme IX farnesyltransferase
                     activity [Evidence IEA];
                     GO_process: GO:0048034 - heme O biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="heme o synthase"
                     /protein_id="HEX2124650.1"
                     /translation="MIPQLTVGNTVRNYYELTKPKIWYLLVFTAFGAALTASLLFNIS
                     IQPLTWLLLIGGVAAGSAAADTLTGYNDRDIDAIMDRTRGRPIPSGRVSPQKALIFGL
                     ILAAISLIFSWFINIWAFALMAFGLFDNIIVYSKWLKRRSQLNIILGGFSGAAPAMIG
                     YVAVTSQNIEIGLVMAGLVFLWIPTHIWSLALHFKRDHTKAGIPMLPIVSSEKKSVRI
                     IAWTTLMMVVFSILPFFFNQFGLIYLITAGIFGVAMIGVSIWLLTKPSEKVSWIVFKF
                     SSPYLTALFIAFMVDAFFR"
     gene            complement(3357..3596)
                     /locus_tag="VHF44_03505"
     CDS             complement(3357..3596)
                     /locus_tag="VHF44_03505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HEX2124651.1"
                     /translation="MPTAYALINCDLGSEEEIINELRKIPEVIEVSEVYGVYDIIAKV
                     KSDTIDKLREIITWHIRRIDKIKASLTMIVIEDQS"
     gene            complement(3708..4031)
                     /locus_tag="VHF44_03510"
     CDS             complement(3708..4031)
                     /locus_tag="VHF44_03510"
                     /inference="COORDINATES: protein motif:HMM:NF003084.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor eIF-1A"
                     /protein_id="HEX2124652.1"
                     /translation="MVLKLGKRKVLNEADLKEMVMPQKGEMLGRVIKLVGGDNIIVKC
                     TDGKVRTCRIRGKIKRRMWIRDNDLVLVAPWDFQSDKADIVWRYISAHADKLEQEGHL
                     VGLQK"
BASE COUNT         1488 a          717 c          769 g         1519 t
ORIGIN      
        1 gcatagtttt tttcgtaaat ccttacattc tgggtctgga tatgttgaag aaataaatcc
       61 tgcatttttc tgcaataaat ggataacttt ctttgagatt ccgagtggat tgacatttga
      121 actgaagtca attttaacca agttgggatt tacagaatgt actccgccat gcgagcaggc
      181 atttgctatt gatgtttttc gataatttcc tttgcctgcg ttggagtcta tcatcactcg
      241 acttatgaca ttccatatta gaatgtttcc tacattattg gtaaatacta tattatttta
      301 ttaagtccta tgaaacgatt attaattaca tgacctacat ttgcaaatat gttaaaggtt
      361 gcacttattg gatcaacagg tgctgtaggc caagaatttg taatagcttt gaataaacac
      421 ccatggtttg aattaacttg cattgcttca tctgagagat ctgcaggaaa gaaatatgtc
      481 gatgcactcc gggatcccaa ttctggaatc ctgcgatggc ataataaaga gcaaattcct
      541 gaatatatac atgacatgat tgttagtaaa gttgaagaga tagatgcaaa aaaattcgat
      601 ttagtattta ccgcacttga atcagacgat gcgaaaataa tagaacctaa atttgcgcaa
      661 tcagtaccag taatcagtac tgctgctgct tttagatatg aaaatgatgt tccaatattg
      721 attccaggta taaatgataa tcacatagaa ttgctgaatg ttcaaaggaa gaatagagga
      781 tggaacggat tcatatctcc gcttccaaat tgtactacta ctggtttagc aattactcta
      841 aatccaatct tgaatgcatt tggaatagat gatgttttca tgacatctat gcaggcattg
      901 tccggtgctg gaagatctcc aggtgttatt gctcttgata tcatggataa tgtaattccg
      961 tacattccaa aagaggagga gaaagtccaa gtagaaacaa agaagatttt aggaactttg
     1021 aattctaaat ctattgttcc tgcgccagtc aaagttagtt gtacatgcac tagagttcca
     1081 gtattggacg gacatacaga aagcgtgttt gtaaaaacga aaaaccaggt ggaaccagac
     1141 aaagtaaagg aggaaatgtt aaagttctca aaatctgcta cagaaaaaaa attaccgtct
     1201 actccaaaag agtatatcat tgtctatgat gatccaacaa gacctcaacc acgtatagac
     1261 agagagatca atgatggtat gacaacattt gtaggtagat tgagaaagga tacagtattt
     1321 gataatggtg tcaaatatat cttgctatca cataatgaga aaatgggatc ggcaaagggt
     1381 gctgtattac ttgcagaatt attaaaggac aaagagatga tataattttt ttattattat
     1441 aaaaaaaaca attaaatttg aaattaatag gtttattaat ccccaaattg aagatataat
     1501 aggataatta gatgggaaga atcgatgatt tagatctaaa gattttaagc gagctttcca
     1561 aagatgcgag tatttctgtg ccacgtctct caaaaaaaat taatatcaat gcttcagttg
     1621 tttatagtag aatcaagaga cttttaaaga ggggactaat aaagaagttt acaatagtta
     1681 tcaatgatga ggctcttggt ttcagtgtaa gatcactcac tgggattaat atggattcta
     1741 aattaagaga taatgtcctt aatgagttat tcaaaattcc agaagtgcgt gaaattgcag
     1801 aagttacagg cagatttgat attttagtta caatgaccgc ccgttcactt gatgaaatac
     1861 atcaactgat ttcagaaaag gtcggtcatg ttgagggagt tcaaaaaaca gaaactttta
     1921 tcgaaatgag aaagactgct cgagaaataa tttatccgac atctatatct aaataagatt
     1981 atctactgct ttgaaaatta taaataacca catattctct tataaagggt gataccctta
     2041 atttgatacc acaactgaca gtaggtaata cggtcagaaa ttattatgag cttacaaaac
     2101 caaagatctg gtatctgcta gttttcacag catttggtgc tgcgcttact gcatcattat
     2161 tatttaatat ttctattcag ccattaactt ggctcttgct tattggtgga gtagctgctg
     2221 gttccgcagc agctgatacg ctgacaggat acaatgaccg agatattgat gcaattatgg
     2281 ataggacaag gggcagacca attccatcag ggagagtttc accacaaaag gcactcatat
     2341 ttggtttaat cctggcagca atttcgttaa tattttcatg gtttatcaat atctgggctt
     2401 ttgctctcat ggcttttgga ttgtttgata atattattgt atatagcaaa tggctgaaga
     2461 ggagaagcca gctaaatatt attttaggag gtttttcagg cgcagctcct gcaatgatcg
     2521 gttatgtcgc cgtaacttct caaaatattg agattggttt ggttatggca ggtcttgttt
     2581 tcttatggat tccaacccat atatggagtc tggcgctaca tttcaagagg gaccatacaa
     2641 aagcaggtat tccaatgctt ccaatagtct ctagcgagaa gaaatcagtt cgcataattg
     2701 catggacaac attgatgatg gtagtcttca gtatacttcc attctttttt aaccaatttg
     2761 gtctaatcta tttgattact gcaggcattt ttggtgttgc aatgataggt gtatcaatat
     2821 ggttattaac caagcctagc gagaaagtat cctggatagt atttaaattc tcgagtcctt
     2881 atttgactgc actttttatt gcatttatgg tagatgcatt cttccgttaa tttatactat
     2941 cagactacct aaatctaaat aaatatataa aatacataaa aaatctataa gatgagataa
     3001 agagttattt attatttttc tataagtaaa agatataaat aaattactta ttaattaaag
     3061 tacttatgaa aaaaagaatg aaatagttga ttttatgcct ttattgtcaa tcgaaattaa
     3121 aaataagtta gatttctaat aacatacata tagaaacata tttggttcgg gtttgctaga
     3181 tgacaaaaga taatggtaaa aaacacacaa aatgtgttgc ttattcacat ataactatca
     3241 gtcaagtggt taaagatatt ccatatttaa gaaaatagcc tcaaagagat tgtaaagaaa
     3301 tagatagaat ctttgatagc tagaaggctc ttaatccaag tctttttcta ctatctctaa
     3361 ctttgatctt caattacaat catggtcaat gatgctttaa ttttatcaat tcttcttata
     3421 tgccaagtaa taatttctct taatttatct attgtatctg atttaacttt agcaattatg
     3481 tcatatacgc catatacttc actaacttct attacctcag gtattttcct caattcattg
     3541 ataatttctt cctcagatcc aagatcacaa ttaattaatg catatgctgt tggcacataa
     3601 tggatatcag atgatgggta ttaatcttta atggctgcag tagcacaata gcaataatca
     3661 attattatat tgataatcag agagatttac tttcgtgaaa acttttatta tttctgaagc
     3721 cctactagat gaccttcctg ttctagttta tctgcgtgag cggagatgta tctccataca
     3781 atatcagctt tgtcagattg aaaatcccaa ggggcaacaa gtacaagatc attatctcta
     3841 atccacattc tgcgtttaat ctttccacga atacgacatg tccttacctt accatcagta
     3901 cacttgacaa tgatattatc ccctcctaca agtttgataa cacggccaag catttctcct
     3961 ttctgtggca tgaccatttc ttttagatct gcttcattga gtacttttct tttgcctaac
     4021 tttaaaacca taatttattt taattacgag tttaaaaatg tagtgatctt gtcaagtgag
     4081 aaataataat aataaaatag aagtataaat attaagattc tttttttaat agctgtgtca
     4141 catacataaa caaaggtaat attatcgtct tcgactttct cctatcgtca tttatctata
     4201 gtgcagcaat ccaatggtta cttttgtatg taaaactttt gtagagttga cctagactac
     4261 tcgatttatt ttaggagcac tattacatta attgggaaac ccattagtgc ttttttgctg
     4321 cattatccat ttttcttgct cacaggctat ctactaattt tctcttttgc attcttaatc
     4381 tgactataaa gatttcataa attacaatat atattgaagt taaactcaag ttggcaatca
     4441 ttcctcatca tttgttatag taagaattat catattttcg actattaact atc
//
LOCUS       DATABJ010000212         2723 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_592567, whole genome shotgun sequence.
ACCESSION   DATABJ010000212 DATABJ010000000
VERSION     DATABJ010000212.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2723)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2723)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2723
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_592567"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..193
                     /locus_tag="VHF44_03515"
     CDS             <1..193
                     /locus_tag="VHF44_03515"
                     /inference="COORDINATES: protein motif:HMM:NF013175.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124653.1"
                     /translation="NTKWNVHILEPREGIGGHCLPKDTKMFLQSSKSIKSKILQAAIE
                     VDHDYRRYREAREIKGIGT"
     gene            257..895
                     /locus_tag="VHF44_03520"
     CDS             257..895
                     /locus_tag="VHF44_03520"
                     /inference="COORDINATES: protein motif:HMM:NF014625.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIG-L family deacetylase"
                     /protein_id="HEX2124654.1"
                     /translation="MSKKQSVVAFGAHPDDLEIGMGGTLAKLARLGYDVNLVIATLPN
                     FVKTDIKEERRIEATMSAKTLGCKSPHFLDLSPDEITIGRKFVTMIDDIINKHKPEAV
                     FTQWIGDSHQDHQALTRAVIAASRDSNNLFMYETTIPGGLTENVFRPQLYIDITETLE
                     LKSNALDCFHSQKNNRCGNLWIDAVVGRCSYRGYQMNVKYAEAFEVVKVTKW"
     gene            complement(1024..2127)
                     /locus_tag="VHF44_03525"
     CDS             complement(1024..2127)
                     /locus_tag="VHF44_03525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEX2124655.1"
                     /translation="MSEQKKLKENINNGIKSASVLITATGSIVAQGIIKSLKLVNQMS
                     NPVKYRIIATDMSVQAAGLYRCDKGFLLPPSSSPDYLDSIIKIVKDENIQAIYVGSDQ
                     ELLVIGNAAERIEHETKAKVLSNPLKIINIARDKWKTFEFLKANNLPCALSSLPEDSK
                     SFIQNIGFPIVVKPREGYGSLHFYIVNSLEEMDYALSRIRKVGWSPILQEYLEGDDKE
                     FTSGVTVDRTGKYVMSSISIQKTVKHGQTYKAFIDDFENIRRSSEEIALKLGARGAIN
                     IQAKLQKEEPKIFEINPRFSATTPMRSAAGINEPDIVFRNSVLGEEIKIKHYERLICM
                     RYWNEVYIHHSTFEKALNVGKVDGIDSFVHNYF"
     gene            complement(2152..>2723)
                     /locus_tag="VHF44_03530"
     CDS             complement(2152..>2723)
                     /locus_tag="VHF44_03530"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124656.1"
                     /translation="EEIISNLSPRAIPILLLLCRDLGVTNFVSGTGGSMGYTIVASMV
                     FNELGIDMPHVVLWPSNDVYAGIGQSEAMSVLKLTDQSQISRYLEELKIQNTKYENKI
                     RPFIIERTQKIKEHEPIQMLLLNLFDLKEKQRKVRQDIKIAEKVSNALALKPCFIDYA
                     VNFGMKRTEELWRQNLLNNKSLDSPVVMT"
BASE COUNT          844 a          495 c          474 g          910 t
ORIGIN      
        1 aaatactaaa tggaatgtac atattcttga accaagagaa ggaattggtg ggcattgtct
       61 accaaaggat actaaaatgt tcttacaatc atcaaagtct attaaaagta agatattaca
      121 agcagcaatt gaagtagacc atgattatag acgatataga gaagctcgag aaataaaagg
      181 aatagggaca tagtgataat ctttgtattg taaattgcaa agataaataa ataaataatt
      241 aaataaaaaa atcgaaatga gcaaaaaaca atccgtagta gcatttggag cgcatcctga
      301 tgatttagaa atcggtatgg gcgggacact cgctaaactg gctcgtctgg gctatgacgt
      361 taatttggtt atagcgaccc ttccgaattt tgttaaaaca gatatcaagg aagagcgtag
      421 aatagaagct accatgtctg caaagacatt gggatgcaaa agtccacatt ttttagattt
      481 atctccagac gagataacta ttggtcgaaa attcgttact atgattgatg acataattaa
      541 caagcataaa ccagaagccg tttttactca atggatagga gattcacatc aggatcacca
      601 ggctcttact agagctgtaa tagcagcatc acgagattct aataacctct ttatgtatga
      661 aacgactatt cccggtggac taactgaaaa tgtttttaga cctcagctct atattgatat
      721 aacggaaact ttagaattaa agtcaaatgc attagattgc tttcattcgc aaaaaaataa
      781 tcgctgtggt aatctttgga tcgacgctgt tgttggaaga tgctcttaca ggggctatca
      841 aatgaatgta aaatatgctg aagcttttga agtggttaag gttacaaaat ggtagcgaat
      901 tgttacatac gattattgta tcctactgga aatcggccaa aattggtttt gtataccaat
      961 ttgtatacca attgttatac ttatttccta aaacagacat ctcatatctc tagtggacgc
     1021 tcgttaaaag taattatgaa caaatgaatc aataccatct actttcccaa cattcaatgc
     1081 tttttcaaaa gtagaatgat gaatataaac ttcattccaa tatctcatac aaattagcct
     1141 ttcatagtgc ttaattttga tttcttcccc tagaacagag tttcgaaata caatgtctgg
     1201 ctcatttatt ccagcagcgg agcgcatggg agtggttgct gaaaaccttg gattgatttc
     1261 aaatattttt ggctcttcct tttggagttt ggcttggata ttaatggctc ccctagcgcc
     1321 caattttagg gcaatttctt cagatgatct tctgatattt tcaaagtcat ctataaaagc
     1381 cttgtaggtt tgaccatgtt ttactgtctt ttgaatagaa attgatgaca taacatattt
     1441 tcccgttcta tctactgtga caccagaagt gaactcttta tcatcaccct ctaaatattc
     1501 ttgaagtatt ggactccatc ctacttttct tattctagat agcgcatagt ccatttcttc
     1561 taaactattt actatataaa aatgcaaaga tccatagcct tctcttggct ttacaactat
     1621 cgggaagccg atattctgaa taaagctttt actgtcttct ggtaaagaag ataaggcaca
     1681 aggaagatta ttggctttca gaaactcgaa ggtcttccat ttatctctgg ctatatttat
     1741 gatttttaat ggattactca atacttttgc ttttgtctcg tgttcgatac gttctgctgc
     1801 atttccgatt actagcaatt cctgatctga gcccacataa atagcctgga tgttttcatc
     1861 tttgactatt ttaataatcg aatcgaggta atctggcgat gaagatggtg gcaacaaaaa
     1921 acctttatca catcggtata gacctgcagc ctgaacactc atatcggttg caataattct
     1981 atattttaca ggattgctca tttgatttac tagtttcaat gatttaataa tcccctgtgc
     2041 cactatgctt cctgtagcgg taattaacac gctggcactt ttgatcccat tattgatatt
     2101 ttctttcagc tttttctgtt ctgacatttg gcacaaatcc tttcattcag actacgtcat
     2161 aacaactggc gagtccaagc ttttgttgtt taaaaggttc tgacgccaaa gttcttctgt
     2221 tctcttcatt ccaaagttaa cggcatagtc tataaaacat ggttttaaag ctaaagcatt
     2281 acttaccttt tctgcgattt taatatcctg acgaactttt cgttgtttct ctttaagatc
     2341 aaataaattc aaaagtagca tctgtatagg ttcatgctct ttaatttttt gtgttctctc
     2401 gatgataaat ggtcttatct tattctcgta tttggtattt tggattttaa gttcctctag
     2461 atatctggat atttgggact ggtctgttaa ttttaaaaca ctcatcgctt cagattgacc
     2521 gatgccagcg taaacatcat tagaaggcca aagtacaaca tgtggcatgt ctatacctag
     2581 ttcattaaac accatgctgg ctactattgt ataacccata ctgccaccag taccagaaac
     2641 aaagttggtc actccgagat ctctacaaag aagtaatagt attggaattg ctcgaggaga
     2701 aagattactg ataatttcct ctg
//
LOCUS       DATABJ010000213         2842 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1909883, whole genome shotgun sequence.
ACCESSION   DATABJ010000213 DATABJ010000000
VERSION     DATABJ010000213.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2842)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2842)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2842
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1909883"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..385
                     /locus_tag="VHF44_03535"
     CDS             <1..385
                     /locus_tag="VHF44_03535"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124657.1"
                     /translation="IVFIIINLSTAILPNEYLVPTIPFYILNIIPIVAVDILLSKLST
                     PKTKIVNYVAGAVIGSIFFTLYYPLITHTYNEVLPNSQTVWPSLTSSIYFKMIDKIYP
                     LMVIPAALIGIVATIVSSKLIPDKN"
     gene            798..1046
                     /locus_tag="VHF44_03540"
     CDS             798..1046
                     /locus_tag="VHF44_03540"
                     /inference="COORDINATES: protein motif:HMM:NF017758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HEX2124658.1"
                     /translation="MKEDAVVENADIVFYDMLIQLVHKTNVEEESVSVLTQTLDEEKS
                     MAEWIRSNTPVMLTQLWPDIEASITKKEIDEEKQVPVQ"
     gene            complement(1936..2646)
                     /locus_tag="VHF44_03545"
     CDS             complement(1936..2646)
                     /locus_tag="VHF44_03545"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX2124659.1"
                     /translation="MTVVNSEILVAKTQDRIWRALKRHYQYDSSLKSSQDFLLNHVNS
                     KISLVIMYADLVGSTNMSMTLPVDKFVTIIRAFLYEMSCIVQSYGGYVLKYVGDAVIA
                     FFPSGYKKLLACDNAVQCAKSMITVIKNGINPILNQYDYPELSVKIGIDEGKNVIVQY
                     GHDKSSLIDILGYCISISAKITTLTNPNKISVGEDVYDILHPQIKNKFIEAKHNLGDW
                     KYANKQTGQLYKFYTLQD"
BASE COUNT          957 a          497 c          418 g          970 t
ORIGIN      
        1 tatagtcttt attatcatta acttatctac tgcaatactt ccaaacgaat atttggttcc
       61 aactattcca ttttacatcc taaatattat tccaattgta gcagtggata tattattgtc
      121 aaagttatcg acaccaaaga caaagatagt taattacgta gcaggcgccg taattggctc
      181 aatcttcttt acgctctatt accctttgat aacccatacg tacaatgaag ttttaccaaa
      241 ttctcagaca gtctggccaa gccttacaag ttcaatatat tttaaaatga ttgataagat
      301 atatccttta atggttattc cagccgcgtt aatagggatc gtagctacaa ttgttagctc
      361 taaactaatt ccagacaaaa actaaaataa aaggagtagt agtatagtag gtagtcaatc
      421 acgcactggc aaaacttttt cctccttcga aaatacaaga aataatagaa ggagtagtaa
      481 acgttcattt ccaaaaaaag caaatttctc ttaatgacaa attagttttg tacttaaatg
      541 atgcattatc aatggaaaat gcttcaatac aaagattaca atcgcggata cagcaaacta
      601 gattacagga ttcaaaacaa caaatgaagc atcacttaga gaagacaaag aacaacaaaa
      661 cagattaaga caattaatat cttatcttga tggcaagcca acaaaagata aggcacaatt
      721 aatattcctt ctgcacccaa atctctaatg gacatcctca aaatacacat gctactgctg
      781 agatttgagc taaaggaata aaagaagatg cagtagtaga aaatgctgat attgtgtttt
      841 atgatatgct tattcaacta gtacataaaa ccaatgtaga ggaagaatca gtatcagtct
      901 tgacacagac cctagatgag gaaaagtcta tggcagaatg gataaggtcc aatacaccag
      961 tcatgcttac tcagctatgg ccagatattg aagcatctat tacgaagaaa gaaatagatg
     1021 aagaaaaaca agtaccagta caataaagtg ataatatagt tattgttatt gctaaaatac
     1081 aataatcttc aattacttcg ctaatggtct ccattattta ttagactcag aaattatgga
     1141 agttctcttt tgaagtacaa gtttacaatg cttcattata ttaatctatt attggatagg
     1201 ttttatccat ttccctattt gccatatcta ttgattttac tgtttcatat ctgtgtgttg
     1261 attctgttac tggagaaaaa atcatcgtac ttacattaac gctataataa taaagcttat
     1321 ctggatcgta cttctgtacg gtttcaatat tttcatcttt gtttactctt tacatgacaa
     1381 cgttaccatt acataagttg ttatatacga atagctgtga tgttttgcct ctttgaggaa
     1441 ttctattcta aggacgtgat ccagtttctc cccagaaacc tggcctgata ctgatccaat
     1501 ccatatacac aatattcttt ttttctaaat tcttgttatg tgtacctgtc taagttagtg
     1561 attctctaat ggtccaccct ttacataacc tacaatttct ccgaacgcgc caccctcccc
     1621 tccttaactt ttaaggtgat cagtattgta tcattacgat taagcgcgga tcgagtgttg
     1681 taacaaatat agagacttta tacagactac aaataatgat aataattcag tcttgcaaat
     1741 gtgacttcct atgtaaccct acctattgca caatcacctg cattaatata ttttaagaac
     1801 aactctatac tttgtgttgc actgctgaag acatggttcc cgttatttct tatacaatgc
     1861 atttgagatc tatgtttagc cttttaggct atagttttat attatatata ataaacgctc
     1921 aatacactaa ctatgctaat cttgtagagt ataaaatttg taaagttgtc ctgtctgctt
     1981 attagcatat ttccagtcgc caagattatg tttagcctct atgaatttat ttttaatttg
     2041 tggatgcaat atatcataga catcttctcc aactgaaatt ttatttggat tagttagcgt
     2101 agttattttt gcagatatgc ttatacaata tccaagaatg tcaattaaag agcttttatc
     2161 atgtccgtat tgtacaatta catttttacc ctcatctata cctattttaa cactgagctc
     2221 tgggtaatcg tattgattta atatgggatt aattccattt ttaattacag ttatcatgga
     2281 ttttgcgcat tggactgcat tatcacaagc aagtaatttt ttgtatccag atggaaaaaa
     2341 agcaatgacg gcatcaccta catattttaa cacataacca ccataactct gtacaataca
     2401 actcatttca tataaaaatg ctctaattat tgtgacaaat ttatctacag gtaaagtcat
     2461 actcatatta gttgaaccaa ccaggtctgc atacataatc acaagtgaaa tctttgaatt
     2521 tacatgatta agaagaaaat cttggctaga ttttaaagat gaatcatatt gataatgtct
     2581 ttttagtgct ctccatattc tgtcttgtgt tttagctaca agtatttctg agttgactac
     2641 tgtcattctt actataaatt gaatgctgta gttagttaag gttacgttag tattaaatca
     2701 agaaataata aatataatga ctcttaactc tcatatcatt aggcaaaatg tctgcatttt
     2761 ctccacttta atcaaggtat gtccactact agcaatagct gaccagattg atgaagatat
     2821 attgaatttg agtgcaggta tc
//
LOCUS       DATABJ010000214         3283 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1038961, whole genome shotgun sequence.
ACCESSION   DATABJ010000214 DATABJ010000000
VERSION     DATABJ010000214.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3283)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3283)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3283
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1038961"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..763)
                     /locus_tag="VHF44_03550"
     CDS             complement(<1..763)
                     /locus_tag="VHF44_03550"
                     /inference="COORDINATES: protein motif:HMM:NF014375.4"
                     /note="Presence of a B(12) (cobalamin)-binding domain
                     implies dependence on cobalamin itself, in one of its
                     several forms, or in some unusual lineages, dependence on
                     a cobalamin-like analog; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology.
                     GO_function: GO:0031419 - cobalamin binding [Evidence
                     IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin-dependent protein"
                     /protein_id="HEX2124660.1"
                     /translation="MVYIRSKKVKGIDYAYLVQSIWDHKNNTSKQQIIKYLGKTSNVT
                     IEDIPKEYRNDPKIITFISIYSSSPADKEKLVAKIQEEIFALLTECNLGDLIKVYDKY
                     SSLFGLANFYDKLLKPVMYKIGELWEQGKLDVATEHACTNTASSLVKVINEQISHSKA
                     TRSQYKILICTPDGELHSLVCNIIESLLVSKGFKVYNISPSVPSESIIEYLKDIEPDI
                     MLISITITDNIKPAERLIKEIRLKYHKVPIIIGGSG"
     gene            complement(850..1419)
                     /locus_tag="VHF44_03555"
     CDS             complement(850..1419)
                     /locus_tag="VHF44_03555"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124661.1"
                     /translation="MESQKISKLFILYCSLAGFISAWAISGLLVIVDLISGTPPGTFF
                     AVIGISIGFTDTTTAQYIGFALHVLTGITAGNIFGQLAIFWRKIAPYNARYGVPRGMI
                     VGIALWLVLFVPLATFGIQPRLDSFAFSAPNQYIYNIASHFQGLYPIIIGGSFFFHLI
                     YGAMTGFISGRMAGLGMFARIKATAQQSS"
     gene            complement(1479..2879)
                     /locus_tag="VHF44_03560"
     CDS             complement(1479..2879)
                     /locus_tag="VHF44_03560"
                     /inference="COORDINATES: protein motif:HMM:NF017206.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-binding protein"
                     /protein_id="HEX2124662.1"
                     /translation="MQNQNISNQTVVRNSKGKTFKILVTGASGFIGSRLVYRLSLSSF
                     SKDNQEIICMTRNVESLERRFNRDVKIVNADVTNYQQVVRAMSEVDVAFYLIHSMEGS
                     SKEWKKFAERDRLAAENFATAATECGVKRIIYLGGLSHGKDNELSEHLRSRKQVGEIL
                     KTSDAKVTIFQAAVILGQGGGSFQMLQYLVERLPAMVCPKWVLTKSQPISVDDVVTYL
                     VKAIDVKETEGRTFEIGGSDVLTYVDMMRHYSKMLNKSIKIIIIPFLTPRLSSYWIDL
                     ITPVKASLARPLIDSLKHEATVKDDSIKKMIPIQLKNFEEAIKSAKEEQMQRERIARR
                     ERTSHSFNNRILSISLFAMVAIGSTYYILDARPEIFQANWLLLSGFWYFGIAFSIYFV
                     IKGARLGAMVAGIIGWITLAFWLTDNIYTVLGNSLIASSPDIIMTIRNFIGAIIAAVV
                     VVASHNVFHKIRVHGL"
     gene            complement(2909..3241)
                     /locus_tag="VHF44_03565"
     CDS             complement(2909..3241)
                     /locus_tag="VHF44_03565"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124663.1"
                     /translation="MTRSIMFNLHIDLGESYVYGQAVVGDKSYRINIQVGNQSIIFPS
                     DFEIDTDQALIYFDMGEKDKIVLNSNVTKGNRDMIELYVNDETMQNLANVLPISMTMV
                     MDKPSKIK"
BASE COUNT         1010 a          605 c          508 g         1160 t
ORIGIN      
        1 aaccagaacc gcctattatt attggtactt tatgatactt taaacgaatt tccttgatca
       61 atctctcagc tggctttata ttgtctgtaa tagttattga aataagcata atatctggct
      121 ctatatcctt tagatactca ataatcgact ctgaaggaac tgaaggtgag atattatata
      181 ctttaaatcc tttgctaaca agaagagatt ctattatatt acagactaaa ctatgtagtt
      241 ctccatctgg agtacatatc agaattttat attgtgacct tgttgctttt gaatgagaaa
      301 tttgttcatt tattaccttt actaggctgc tggcagtatt agtacatgca tgttcagttg
      361 caacatcaag ttttccttgc tcccatagtt ccccaatttt atacatgaca ggttttagta
      421 acttgtcata aaaatttgcg agtccaaata acgatgaata cttatcgtat actttgataa
      481 gatcacccag gttgcactct gttaataacg caaatatttc ttcttgtatt tttgctacca
      541 gtttttcttt atctgcagga gaagagctgt aaattgagat aaatgtaata atcttaggat
      601 cattgcgata ttctttagga atatcttcga ttgttacatt agatgttttt ccaagatact
      661 ttattatctg ttgctttgag gtattgtttt tatgatccca tatgctttga acaagataag
      721 cataatcaat gccctttact ttcttacttc taatatatac catttctgaa caaaattttt
      781 acctttattt actattccaa ttatattaaa ttagtggtaa ataacaattc tggtgctaaa
      841 agagaaatat taggaggatt gttgtgcagt ggctttaatc cttgcaaaca ttcctagtcc
      901 tgccattctt ccagatataa atccagtcat tgcaccatat ataagatgga aaaaaaatga
      961 tcctcctata ataataggat ataatccctg aaagtgtgaa gctatgttat agatatattg
     1021 atttggtgcc gagaacgcaa aggaatcaag tcttggctgt attccaaagg ttgcgagtgg
     1081 tacaaataac acaagccata aagctatacc aacaatcatt ccccttggta ctccgtatcg
     1141 tgcgttatat ggtgcaattt tccgccaaaa tattgcaagt tgtccaaata tgtttcctgc
     1201 agtgattcct gtcaacacat gtagggcaaa ccctatgtat tgagcagttg ttgtatcagt
     1261 aaatcctatc gagatgccaa ttacagcaaa gaaagtgcct ggtggagttc ctgatatgag
     1321 atcaactatt acaagtagac ccgaaattgc ccaagctgaa ataaatcctg ctaatgagca
     1381 atacaatata aacaatttag agattttttg agattccata aactgcattg gcagtagtaa
     1441 tataaaaaca agtgactaag atttttaata gtgcctaact ataggccatg aactcttatt
     1501 ttatgaaata cgttatggga tgctactaca actactgccg caattatggc accaataaag
     1561 tttcttattg tcataattat gtcaggagaa ctagcaatta atgaattacc taaaacagtg
     1621 tatatgttgt cagttaacca aaaggcaaga gtaatccaac caattatacc tgcaaccata
     1681 gcaccaagcc ttgctccttt aattacaaaa tatattgaga aagctattcc gaagtaccag
     1741 aaaccactta gaagtaacca attagcttga aatatttcgg gcctggcgtc aagtatatag
     1801 taagtagaac ctatagcaac cattgcaaac agcgatattg acagaattct attattaaaa
     1861 gagtgagaag tacgctctct tcttgcaatc ctttctcttt gcatttgttc ttcttttgca
     1921 gattttattg cttcttcaaa attttttagc tgaataggaa tcattttttt tattgaatca
     1981 tcttttactg ttgcctcatg tttgaggcta tctatcaaag gtcttgccaa tgatgcctta
     2041 acaggagtaa taagatcaat ccaataggaa gaaagtcgtg gagtaaggaa aggaattatg
     2101 attattttta ttgacttgtt tagcattttg gaataatgtc tcatcatatc tacatatgta
     2161 agcacgtctg atcctccaat ctcaaatgtt cttccttctg tttctttcac atcaatagct
     2221 ttaactaaat aagtaaccac atcgtctacg gatattggtt gtgatttagt caggacccat
     2281 tttggacaca ccatcgcagg aagcctctca acgagatact gtagcatttg aaatgaacct
     2341 cctccttgtc ctaaaataac agcagcttgg aatatcgtca cttttgcatc ggatgttttt
     2401 aatatttcgc ctacttgttt tctgctcctt aaatgttctg aaagttcatt gtctttccca
     2461 tgactcagcc cgccaaggta gatgattctc ttaactccac attctgtggc tgctgttgca
     2521 aaattttctg cagcaagtct gtccctttct gcaaatttct tccattcctt agaagaacct
     2581 tccattgaat gtattagata aaatgcaacg tctacttcag acattgctct tacaacctgt
     2641 tggtagttag tgacatccgc atttactatt ttaacatctc gattaaaacg acgctccaat
     2701 gactctacat ttcgtgtcat gcatattatc tcttgattgt ctttagagaa agacgataaa
     2761 gataatctat ataccaaacg gcttccaata aagccactgg cacctgtgac caaaattttg
     2821 aaagtcttac cttttgaatt acgaacaacc gtttggtttg agatattttg attttgcatt
     2881 attcaatcac tgtagtaatt tttttatttt attttatttt tgatggctta tccattacca
     2941 ttgtcataga tataggaaga acatttgcta aattttgcat agtctcatca ttgacgtaca
     3001 actcaatcat atctctattc ccttttgtga cgttactatt taatacaatt ttgtcttttt
     3061 ctcccatatc aaaatatatc aatgcttgat ctgtatctat ttcaaaatcg ctaggaaata
     3121 ttatagattg atttccgact tgtatattta ttctatatga tttatcacct acaacagctt
     3181 gaccatagac atagctttcc cctagatcta tgtgtaaatt aaacataatc gatcttgtca
     3241 atttattctg atgttgctat tattcttcct atatttaagt aat
//
LOCUS       DATABJ010000215         2067 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1910669, whole genome shotgun sequence.
ACCESSION   DATABJ010000215 DATABJ010000000
VERSION     DATABJ010000215.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2067)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2067)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2067
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1910669"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1167)
                     /locus_tag="VHF44_03570"
     CDS             complement(<1..1167)
                     /locus_tag="VHF44_03570"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124664.1"
                     /translation="MNTRKIVFFTFNLAIIIVLVTLSPIPIKTAFGDGLFMEELSASF
                     GNRKADLLIKMTPPVVTTETLQTQDQKAVIQFKLFDSNTREGIKHVTYFITIEKDGKK
                     LLSDMFHDHNGDLRVQIRPKNTDLVTVYGEPDPILQAYTGTENSPVIAEGPVFLEGGL
                     YHFIVRIITIDFDRTIIPDDKQPVYDAWLSVGLTEEQQITVDGKQIPIEILSYYDKIN
                     DFTFNESKMQMEFTMPFDWNTTRLEKNPVLVHQEVTVPKPSEFAASRSYTGTVNDIDV
                     TKNVVLDDTDPQKDIIHFMLPKNQVIQIAEQVNNKNGQAVSDVPMKFTLQPGSGNGGG
                     IGGEEPAQAAAATANTISTTGNNATSTTTATSEPMEKLTDGGTYKVKISWNPATI"
     gene            complement(1640..>2067)
                     /locus_tag="VHF44_03575"
     CDS             complement(1640..>2067)
                     /locus_tag="VHF44_03575"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0009190 - cyclic nucleotide biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0035556 - intracellular signal transduction
                     [Evidence IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX2124665.1"
                     /translation="DAVISIIPSSVNNEDKYLASNTSVECGKSIINVIRETNGMLNKK
                     FGYPELFTKIGIDVGENAIIQYGYEQRSPIDILGYTMNVAAKITSLTATNKVSIGGNV
                     YKSLDHKIQSEFHELSMPGNEWKYITYGTDTPYKVYTLK"
BASE COUNT          600 a          376 c          331 g          760 t
ORIGIN      
        1 tatagtagct ggattccaag atatctttac tttgtacgtg ccaccatctg ttaatttttc
       61 catgggttca gacgttgctg tagttgttga agtagcatta ttaccagtag tactaatagt
      121 attagcagta gcagcagctg cctgcgccgg ctcttctcct cctattccac caccattacc
      181 actaccaggc tgtaaagtaa acttcatcgg tacatcagat actgcctgcc cattcttgtt
      241 atttacttgt tcagcaattt gaataacttg attttttggt agcataaagt gaattatatc
      301 tttttgtgga tcagtatcat ctagcactac atttttagtt acatcaatat catttactgt
      361 tcctgtatag gatctacttg cagcaaattc agatggtttt ggaaccgtga cttcttgatg
      421 gaccaatact ggattctttt ctaatctagt cgtattccaa tcaaaaggca tagtaaactc
      481 catctgcatc ttgctttcat tgaacgtgaa gtcatttatt ttatcataat aagaaagtat
      541 ttcaattggg atttgtttac catctactgt tatctgttgc tcttctgtca ggccaacact
      601 taaccaagcg tcatatactg gttgcttatc gtctggaata atagtcctat caaaatcaat
      661 tgttattatc ctcactatga aatggtataa accaccttct agaaatactg gtccttcagc
      721 aattacagga ctattttctg ttcctgtgta tgcttgcaag attggatctg gttcgccata
      781 gactgttact agatctgtgt ttttcggtcg tatctgtact ctcaaatctc cattatgatc
      841 atgaaacata tctgaaagta gttttttacc atctttttct attgttataa aatatgttac
      901 atgttttatt ccttcccttg tatttgagtc aaagagctta aattgaataa ctgccttttg
      961 gtcctgtgtc tgcaatgtct ctgttgtaac tacaggaggt gtcattttga taagtaaatc
     1021 tgcttttcta tttccaaaag aggctgatag ttcttccatg aataagccat caccaaaagc
     1081 agtctttatt ggaataggag aaagagtaac aagaacgata ataatagcta aattaaatgt
     1141 aaaaaatact atttttcttg tattcatatc tctttatcac cagctatacc ttccacattt
     1201 aattaattaa gcatagtagt aattgttaac taacttggta gttattacct cactatatat
     1261 atccaatatt acattattat gaaaaggtag ccgtaattgc taatccattt gtgctatctg
     1321 gttttctgag agggaattga tagctcatgc tataatgatt cagtcatcta tttcagaagg
     1381 cggtagcagt gtacatttct aaaccgagaa ataagtatcc catgtcactt tatctgattc
     1441 tcttcctacg attacgatta ctgtatttgg ttctattcac tatgatgtta aatagagata
     1501 ggacataaat tgataacaat ttgaaaaaca tgactaagcc caatttaaga gggtttctaa
     1561 tatattctgg tttacattga ggtatatact tatttgagat ttaaatccag caaacaagca
     1621 taatgaaatc aaaaaagttt tactttagag tataaacttt gtaaggcgta tcagtcccat
     1681 aggtaatata cttccattca ttaccaggca ttgataactc atgaaattct gactgtattt
     1741 tatgatctaa tgatttgtat acattacctc ctatagatac tttatttgta gctgttaggg
     1801 aagttatctt tgccgctaca ttcatagtat atcccagtat atcaataggt gagcgttgtt
     1861 cgtagccgta ctgaataatt gcattttctc ctacgtctat acctattttg gtaaataatt
     1921 ctggataccc aaatttttta tttaacattc cattagtctc cctgattaca ttgatgatcg
     1981 atttgccaca ttccactgac gtgtttgatg caagatattt gtcctcgttg ttgacactac
     2041 taggaataat tgagattact gcgtcgc
//
LOCUS       DATABJ010000216         1856 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1040171, whole genome shotgun sequence.
ACCESSION   DATABJ010000216 DATABJ010000000
VERSION     DATABJ010000216.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1856)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1856)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1856
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1040171"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(85..181)
                     /locus_tag="VHF44_03580"
     tRNA            complement(join(85..128,150..181))
                     /locus_tag="VHF44_03580"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(122..124),aa:Pro,seq:ggg)
     gene            complement(394..1212)
                     /locus_tag="VHF44_03585"
     CDS             complement(394..1212)
                     /locus_tag="VHF44_03585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_function: GO:0140359 - ABC-type transporter activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEX2124666.1"
                     /translation="MKINAHHIIDIYNNIRDGLERLFGKIYAVWLREFKVFLRERSRL
                     VASTFTPLLWLFVIGSGMGSNGFNSINANVDYQRFIFPGIVCMSVIFSSIFYGSYIIW
                     DRKFDFLKSVMVAPISRGIIFTGKTLGGMTNSLVQVSILLIVGGIIGIHYTTLSLIQT
                     VVVVLLLSFSLTSLGLALGSYMHSLEGFQMIVSFVVFPIFFLSGALFSIDNLPDWLSI
                     LIIIDPATYAVDALRNTMLGIGSKPFEVDIIILIAFTAGLGAFGILSFRRMKAI"
BASE COUNT          665 a          314 c          296 g          581 t
ORIGIN      
        1 tgaaaataat agatactatt aacgcattgc attaaggatg aaaatcataa tgttgaagtc
       61 aagtatttga atcgatgtag atagtggggc cagtgggatt tgaacccacg accgccagcg
      121 ccccaggcat gtacctcccc atagagagat ggtatcctag accaagctag acgatagccc
      181 cttgtgcaaa tcagataggt gtacctcttt taaatgtaca gtagttgtca aaataatatc
      241 attatcaata cataatttaa atcggaattg aagttagatg gagatcattt atagaaaatg
      301 aatttctgtg gttgatgtaa catatagatg ctatttgagt atttgttttt catttatcac
      361 ataattatgt actcaaccac tcaaataaaa taatcaaatc gccttcatcc ttctaaatga
      421 taaaattcca aatgctccta aacctgctgt aaatgcaatt agtatgatta tatctacttc
      481 aaatggtttg cttcctatgc caagcatagt attcctgagc gcatctacag cataggtagc
      541 aggatctata ataattaaaa ttgaaagcca atcaggaaga ttatctattg aaaagagagc
      601 accacttaaa aagaaaatgg ggaagaccac aaaacttaca atcatttgga atccttctag
      661 actgtgcata taactaccaa gagcgagacc tagggatgtt agtgaaaacg atagaagcaa
      721 aacaactacg acagtttgaa tcaaggataa agtagtataa tgaataccta taatacctcc
      781 aactattaaa agtatagata cctgaactag tgaattcgtc attcctccga gtgtcttgcc
      841 tgtaaaaata attcctctgc tgataggtgc gaccataacg ctttttaaaa agtcaaattt
      901 tctgtcccat ataatatacg atccataaaa aatggatgaa aatatgacag acatacatac
      961 tatcccagga aaaatgaacc tttgataatc tacatttgca ttaatgctat tgaagccatt
     1021 tgagcccatg ccggaaccaa taacaaacag ccaaagtagt ggtgtgaatg tagatgctac
     1081 cagtcggctc ctttctctta aaaatacttt aaattctcga agccaaacag catatatttt
     1141 tccaaaaagt ctttctaaac catcccgaat attattatat atatcaataa tatgatgggc
     1201 atttattttc atgaatctgc catacagaag taagtaagag gaataaaatt gaagtgttta
     1261 agatactata actccctata cagaggactc gaatggacat tatatatata ttttatatcc
     1321 ttctgatacc agattttgat tcaattctaa acgaagattt ctgtctaaca cttagactgc
     1381 gaattatgat gcaactacag actgcagctc ctctcgaagc ggctcattcc agacagcaaa
     1441 ggtatactta gtgataatcc atttctgtga cattgttaaa caaactaggt atggcgtagg
     1501 aagatgtata tttatggtcg caaagcaata atcccactag ttattgttga gtagttaaat
     1561 ggactgacat agataataga aatacttcta caatgaattt atttctcttt gatattctag
     1621 attaatagct aaataataat tttattctat tttgacattt attattttgc actcacagta
     1681 gtgatattaa ctaattgtca gattattgtt aacttcaatc ctttctttaa cataaataaa
     1741 agttttctag ccaaatagtt tagattatag aaaatctatt tatgtaatta tgactttatt
     1801 atataaaaga tgagcataca cccgttactg tcatattgta ttaaggtgag agtaaa
//
LOCUS       DATABJ010000217         4578 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_817111, whole genome shotgun sequence.
ACCESSION   DATABJ010000217 DATABJ010000000
VERSION     DATABJ010000217.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4578)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4578)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4578
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_817111"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..215
                     /locus_tag="VHF44_03590"
     CDS             <1..215
                     /locus_tag="VHF44_03590"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124667.1"
                     /translation="LDEYAYLVASIMKRAWISTGVLCLNDHSHSDDNNKNGNKENYIT
                     FSVPPIVYGDSKKQQRLLLMLGFDWR"
     gene            complement(386..937)
                     /locus_tag="VHF44_03595"
     CDS             complement(386..937)
                     /locus_tag="VHF44_03595"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEX2124668.1"
                     /translation="MKIKSTVTVMIFVIVIVALATIIARATIGFPTSAFAGEDEQEQR
                     FITELTGFEEVPPVNDTSAIGVAEFKLGQDNIMYTVNVTDIENVTAAHIHRGQVGENG
                     PVIVTLFKEDTPTTAMTTGVLSEGNITATNLEGPMAGQLLSNLTSAMQNEQTYVNVHT
                     QQNPNGEIRGQILNGTSAIMITE"
     gene            1475..2437
                     /locus_tag="VHF44_03600"
     CDS             1475..2437
                     /locus_tag="VHF44_03600"
                     /inference="COORDINATES: protein motif:HMM:NF028479.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-bladed beta-propeller"
                     /protein_id="HEX2124669.1"
                     /translation="MIASLAISFVFVQPSYSTIIISNNGSNTSNNNNQDVSSKEVFVV
                     DYANIRIQKFDTDGKFIAKWGSEGDAKGQFKIPHSVTVDSSGSVYVTDMIDLSVKKFT
                     GDGKFIKKWGSKGSGNGEFRHPHGIDIDSSGSVYVTDMTNLNIQKFTADGKFITSWGS
                     KGDGNGKFMAPEGIAADSFGNIFVSDTANNNIQKFTAHGKFIKKWGTEGDSKGQLNSP
                     AGIDVDSSGNLYVADDGNSRIQKFTNNGDFVTMWGSKGSKNGQLDRPHDIAVDSSGNN
                     DVYVAEQGNFRIQKFTADGKFIKKWGTEGKDDNQFQDPHSVFVY"
     gene            2826..>4578
                     /locus_tag="VHF44_03605"
     CDS             2826..>4578
                     /locus_tag="VHF44_03605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003676 - nucleic acid binding [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX2124670.1"
                     /translation="MTITISDIRVKNLLDLLGYSSLYPPQELALSKGLLEGKNLLVTT
                     PTASGKTLIAMMAAIKIIEKGLKVIYLTPLRALATEKYHDFRALEGLDITGRKIRVKI
                     ASSDYNSSGKEVQDADVIVLTNEKMDSLMRHGAEWISDVGLFVADEVHLIGERERGPT
                     LEMMLTTIRKMYPESQILALSATVANSDDIANWLKCELIESNWRPTKLVEGVYENGNI
                     RMNDGTSFKIVTSVGVTSAAIDIAIDSLKNGGQALIFVETRKRAFSLAAKAAEAVYKR
                     MDKSARKRALELSSQILNKGDDTELTRNLSHLLSKGVGFHHAGLGSLSRDIVEESFKK
                     GVIKLITATPTLAAGVNLPARRIILASILRYDAEYGGNIPISVLEYKQLSGRAGRPQY
                     DTFGEAIIVAESGVSAEDLYNHYIVGSPEPLRSQLMNDRAIRVHLLSTIARVPGIKKN
                     EIYHLFESTLFAKKYHKNTVVFKVDAALSYLENEYFIKCRNDRYVATDFGRKSTLLYI
                     DPLTAVEFRKAIGALDRTTTRKNNGDNDSHTLGFLHMITTSADFYPKLSLRKKDFEEL
                     SSLIQQHGHELFYQISEY"
BASE COUNT         1524 a          726 c          847 g         1481 t
ORIGIN      
        1 gacttgacga atatgcatat cttgttgcga gtatcatgaa gagagcttgg attagtactg
       61 gggtattatg ccttaatgat cacagccata gtgatgataa taacaaaaat ggcaataaag
      121 aaaattatat tactttttct gtacctccaa tagtatatgg agacagtaaa aaacaacaga
      181 gactattact tatgctaggc ttcgattgga gataatttca ttttaatgat taagttgatt
      241 ttgaagaaaa aaggaaaaat atagtaacac tgaatttgaa tgacgcatac tgtctgtcct
      301 atcgcattaa agtttcttcc ttcctatata gtgggagagc attatcaaaa tgatttgaaa
      361 cttgtccaaa catgatacga atatattatt ctgtgatcat tatcgcgctt gttccattca
      421 gtatttgtcc tcgaatttct ccatttggat tctgctgtgt atgaacattt acatatgtct
      481 gttcattctg catagcagaa gtaagatttg atagcagttg gccagccatt ggaccttcta
      541 gattggtagc agtgatgttt ccttctgaca atactccagt tgtcattgca gttgttggag
      601 tatcttcttt gaataatgtg actataacag gtccattctc acctacttga cctctatgga
      661 tatgagctgc tgtaacattt tctatatctg taacatttac tgtatacatt atgttatctt
      721 gtcctagttt aaattcagct acaccaattg cagaggtatc atttaccggt ggaacttctt
      781 cgaaccctgt cagttctgta atgaatcttt gttcttgttc atcttctcct gcaaacgctg
      841 aagttggaaa accaatagtt gctctcgcta ttatagttgc taatgctacg atgacaataa
      901 caaatatcat tactgtcact gtgcttttta ttttcatcaa attagtctgt agattatatc
      961 acatttaaca gatatctatc ttaacctcct catcgttacg atggttatat tccaaatagt
     1021 agacttatga taaaaaatta tggtcacact ctgtacgttg ataactagtt gagtttaata
     1081 acattttttc tttctacact ttctcattgg aaaataggta ttagtctatc attgtcttaa
     1141 tatcatttac agtatattaa atttaataca gttgttcatt atcccataat gtaggaagga
     1201 tcaataatat cattatattg acacactttt cctcaccaat tcctaaacat caagtattca
     1261 tttaaaattt gcctagaagt gctaatgcta ttgtatttct tctaaatatt ccgtataata
     1321 aaatgctata aaaaactact atttcatcaa tttctatatc ttttaatata gttagcttgt
     1381 tatatcttca aaaatcctta taagattacc aaaatattaa tatacataaa tgttcgtaag
     1441 ctggggatgt tatcaaaatg cattagtcat aattttgatt gcctcactag ccatcagttt
     1501 tgtctttgta caaccaagtt attcaactat tatcataagc aacaatggat caaatacaag
     1561 taataataat aatcaggatg tttcttcaaa agaagttttt gtagtagatt acgctaatat
     1621 acgtatacaa aagtttgata cagatggtaa attcatagca aagtggggta gtgaaggaga
     1681 tgccaaagga cagttcaaga taccccatag tgtcacagtg gattcttcag gtagtgtata
     1741 cgtaacagat atgatagacc tatctgtaaa aaaatttact ggagatggta aattcataaa
     1801 aaagtgggga tcaaaaggat ctggcaatgg tgaatttcgt catccacatg gcattgacat
     1861 cgattcttca ggtagtgtat acgtaacaga tatgacaaat ctcaatattc aaaaatttac
     1921 tgcagatggt aaattcatta ctagctgggg tagtaaagga gatggcaatg gtaaatttat
     1981 ggctccagag ggtattgctg ccgattcctt tggtaatatt ttcgtatcag atactgcgaa
     2041 taataatatt caaaaattta ctgcacatgg taaattcata aaaaagtggg gtactgaagg
     2101 agattccaaa ggacagttaa acagtccagc aggtattgat gttgactcct ctggtaatct
     2161 ttatgttgct gatgatggca atagccgtat acaaaagttt acgaataatg gagactttgt
     2221 tactatgtgg gggtctaaag gatctaaaaa tggccaatta gataggcccc atgatatagc
     2281 cgtagattca tctggcaata atgatgtcta tgtagctgag cagggcaatt ttcgaataca
     2341 gaaatttact gcagatggta aattcataaa aaagtggggt actgaaggta aagatgacaa
     2401 ccaatttcaa gatccacata gtgtgtttgt ttattagtct aatagataac ataataatat
     2461 aaataataaa taaagcatgc ttttataaga aaatgaacat cgtgtcctgt ggtaaaacgt
     2521 taatgttctt aacagtagat acactttgga tcgaaagaaa atagttcagt acgagaataa
     2581 agatatgcca tattattatt gtgtttatta ttgagttaat aaattctatc ttacaccttt
     2641 tattcggcca actggcttct aaaatacatt tatccgtaga atatgagcat gattttcaat
     2701 aaattatttt caatttggaa tatcgtagtt ttaggaatga agattgttta tattttagtg
     2761 ttgaagtgat gctttactga gaaagaataa aaatattaac ccttttttat ctctatgcta
     2821 aaatcatgac aataacaata tcagatatta gagtaaagaa cttgcttgat ttattaggtt
     2881 actcttcact ttatccacca caggaacttg ctctatcaaa gggtcttcta gagggcaaga
     2941 acttgcttgt taccactcct actgcgagtg gtaagacact aatcgcaatg atggctgcaa
     3001 taaaaataat tgaaaagggt ctaaaagtta tttatcttac tccattaagg gcactagcta
     3061 cagaaaaata ccatgatttt cgtgcacttg agggtttaga tatcactggt agaaagataa
     3121 gagtcaaaat tgctagcagc gactataatt catcaggaaa ggaagtacaa gatgcagatg
     3181 ttattgtttt aacaaatgaa aaaatggatt cacttatgcg acatggcgcc gaatggattt
     3241 ctgatgtagg actttttgtg gctgatgaag ttcatttaat cggtgaacga gagcgtggcc
     3301 ctactttgga aatgatgctg actaccatac gcaaaatgta tccagaatca cagattctag
     3361 cgttaagcgc aacggttgca aattctgacg atattgcaaa ctggcttaaa tgtgaattaa
     3421 tcgaaagtaa ttggagacca acaaagttag tagaaggagt ttatgagaat gggaatattc
     3481 gtatgaatga tggcactagc ttcaaaattg taacttcagt tggcgttact tctgctgcaa
     3541 tagatattgc aattgattct ctaaagaatg gtggacaagc tttaattttc gtagaaaccc
     3601 gtaaacgtgc tttttctctt gctgctaagg cagcagaagc agtttataag aggatggata
     3661 aatctgctcg gaagagggca ttagagctat catctcagat cctcaacaaa ggtgacgata
     3721 ctgaactaac aagaaatctt tctcatctat tgtccaaagg tgtaggattc caccacgcgg
     3781 gcttagggtc cttaagcaga gacattgtag aggagtcatt taaaaaaggt gtaattaagt
     3841 taataactgc tactccaaca ctggccgctg gcgttaactt gcctgcgcgg cgtataattc
     3901 tggctagcat tttacgctat gatgctgaat atggtggaaa tatccccatc agtgttttag
     3961 aatacaaaca actctctggt cgggcaggca gaccacaata tgacactttt ggagaagcaa
     4021 taatagtagc ggaatcagga gttagtgcag aagatctgta taaccactat attgtaggta
     4081 gtcccgagcc tctacgctca caactgatga acgacagagc aataagggtt catcttctta
     4141 gtactattgc aagagttcct ggaataaaaa aaaatgaaat ttaccatcta tttgaaagta
     4201 cattatttgc aaagaagtat cataaaaata ctgtagtttt caaagttgat gctgccttga
     4261 gttatcttga aaatgagtat tttatcaaat gtaggaatga tagatatgtc gctacagact
     4321 ttggaagaaa gtcaacacta ctttatattg atcctttaac tgcagtagaa tttagaaaag
     4381 caataggtgc gctcgatcgt acgacaacaa gaaaaaataa tggtgataat gacagtcata
     4441 ctttaggctt tcttcatatg attactacta gtgcagattt ctatccaaaa ctatcgctga
     4501 ggaaaaaaga ttttgaggaa ttaagttcat taattcagca acatggtcat gaactctttt
     4561 atcaaataag tgaatatg
//
LOCUS       DATABJ010000218         2899 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1041134, whole genome shotgun sequence.
ACCESSION   DATABJ010000218 DATABJ010000000
VERSION     DATABJ010000218.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2899)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2899)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2899
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1041134"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            192..887
                     /locus_tag="VHF44_03610"
     CDS             192..887
                     /locus_tag="VHF44_03610"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013087.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2124671.1"
                     /translation="MDYYSKEEYPREEKTMNRFGNNSEEEWSNVEHALAYLNKADNIP
                     HRTEGEAVLLDYVPKGAGRILDLGTGDGRLIRLLKIDRPKMEAVALDTSPVMLRAARK
                     QFENDSSIKVIKHDLNFPLPKSLGCFDVVVSSLAIHHLPHERKRSLYREVYDMLKPSG
                     IFCNLDNIASPSMKHHIRFLHAIGFTPETESKSDKLLSMETQLGWLHEIGFVDVDCYW
                     KWLEMALLMGYKP"
     gene            complement(1119..2435)
                     /locus_tag="VHF44_03615"
     CDS             complement(1119..2435)
                     /locus_tag="VHF44_03615"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124672.1"
                     /translation="MQQKIEEKQRLEQEIRTLRETKLSAQNECDEALRSNSITIDTLH
                     EYMRLRECLLEEYGLSIGEDDDTLPKLINVISNLKYSGYDAKTITKNLFNINNLQIRE
                     KELQSQVDGLEARLKRAKQEYSADEEKLASSKQALAVYDELRNMGFGLKELKLLKSIV
                     IEISKSNNINPYLAVKKFFDDIKEQYDTKRGFEPKIMEMNNSLLLARQQHHYISLEYS
                     QMKDTNDKLVELLTYGVTQEEIIYLTSILKDYKVEISCLHQDLVKYGTITGAYNNIAA
                     KVDSLTSESNALTKKIEGLREEQRRISDLLEFQSGEAMKAIQTFLDNLNSHINEVSKT
                     SIQTIKNVKEQSLVVGEQSKIGLQSIGEKVKQQLDLYQKIGSPAEFSPLIKAARGEIV
                     DVDELRTSVIRALGIMTSRLDNVMHRVAKDTLEKTINILQSEFLFS"
     gene            complement(2539..2844)
                     /locus_tag="VHF44_03620"
     CDS             complement(2539..2844)
                     /locus_tag="VHF44_03620"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124673.1"
                     /translation="MRQQVPIYIKEEVIRKWLSGEQRDKIASDISISAGTVTNIISEW
                     KEKIGIPTADTLRILATELKRLNINASQCARGFNLLNIINNLGAQEEVEIESSYSDL"
BASE COUNT          849 a          527 c          489 g         1034 t
ORIGIN      
        1 attactatta cagacatatc taactacttt ccttttttca aagctatcta acctaatgca
       61 tttagcttat cttttatact aaggaagact ttcacatgct gtcatggtct cccgataccg
      121 aagatgaata accaaattaa aagaatcgac gaccctctta tagaacaaat cacagtgaac
      181 taacacagaa tatggattat tatagcaaag aagagtatcc aagagaagaa aaaacaatga
      241 accgttttgg taacaatagt gaagaagaat ggtccaatgt agaacatgct ctggcatatc
      301 ttaacaaagc tgataatatt ccacatcgaa cagaaggtga ggctgttcta cttgactatg
      361 ttccaaaagg tgcagggagg atattagatc ttggtaccgg agacggacgt ttgattaggc
      421 tacttaagat cgatagaccc aaaatggaag cagttgcatt ggatacttct cctgtaatgc
      481 tcagagctgc aagaaaacag tttgagaatg actcttctat taaagtgata aaacatgacc
      541 tgaattttcc tttaccaaag tcattaggct gttttgatgt agtagtctca agcttagcta
      601 tccatcattt accacatgaa cgcaagcgct cactttatag agaagtatac gatatgctta
      661 aaccaagtgg tatcttctgt aaccttgata atattgcatc accttcaatg aaacaccata
      721 tacgttttct acatgccatt ggttttactc cagaaactga gagtaaatca gacaaattat
      781 tatcaatgga gactcagtta ggttggcttc acgaaatagg atttgtagat gtagattgct
      841 attggaaatg gctagagatg gcactcttga tgggatataa gccatagtat gtttttttat
      901 tgctatagaa gtattatgta tatacagaga gatggtatct aaggaacaaa cagaggagaa
      961 gagagcactg atagtttata ttgtaagtaa acaagattaa tcttacaatt atcgctctga
     1021 tacagcatca taagcatttg tagtcgcgga tgtaggtggt gattttcatt cttgttcttc
     1081 ttttaaaaaa gaataattcc tttccctaca agtaagtttt agctaaataa gaattctgat
     1141 tgcagaatat ttatggtttt ctcaagtgta tcttttgcta ctctatgcat aacgttgtcc
     1201 aatcttgaag tcattatgcc taacgcccta attacagatg ttctcaattc atctacatca
     1261 acaatctcgc ctcttgcagc tttgataaga ggagaaaact ctgcaggaga tccaattttt
     1321 tgatacaagt caagttgttg cttgactttt tcacctatag attgtaatcc tattttgctt
     1381 tgctcaccaa cgacaagtga ttgttcctta acatttttga ttgtttgaat tgaggttttc
     1441 gatacttcgt tgatgtggct atttagatta tccaaaaatg tctgaattgc tttcattgct
     1501 tctccagatt ggaattctaa gagatcggat attcttcttt gttcctctct taaaccttct
     1561 atcttcttgg tcaaagcatt agattcagaa gttaatgaat ccacttttgc ggctatgtta
     1621 ttgtacgcac cagtgattgt tccatacttt accaagtcct gatgaagaca cgatatttct
     1681 accttatagt ctttcaaaat gcttgtcaaa taaattattt cctcttgtgt gacaccgtat
     1741 gtaagcagtt caactaactt atcgttagta tctttcattt gcgaatattc tagtgatata
     1801 taatgatgtt gttgtcgggc tagcaataag gagttattca tctccataat ttttggctca
     1861 aatcctcgtt tggtatcata ttgttctttt atatcgtcaa aaaatttctt gactgcaagg
     1921 tatggattaa tgttgttgct ttttgaaatt tcaataacaa tactttttaa caactttaat
     1981 tcttttagac caaaacccat attccgaagt tcatcataaa ctgcaagtgc ctgtttgctg
     2041 gacgctagct tctcttcatc agcagaatac tcttgtttag ccctcttaag tctagcttct
     2101 aacccatcga cctgactttg cagctctttt tctcttattt gcagattgtt aatattaaac
     2161 agattttttg tgattgtttt agcatcatat ccggaatatt tcaagttaga aattacatta
     2221 ataagttttg gtagggtgtc atcatcttct ccaatagata aaccatattc ctctagtagg
     2281 cattctctta gacgcatata ctcatgcaga gtgtcaatag tgatactatt gctccttagt
     2341 gcttcgtcac attcgttttg tgcactcagc tttgtttctc taagtgttct tatctcttgt
     2401 tctaaacgtt gtttttcctc gattttctgc tgcatgtatt taggtatctg tgaaaacgga
     2461 attgtcccgc caagtgcagt tatctgttgg gtaatattaa caatagcttc tgatgaaata
     2521 ttcttagatg tgcacagctt atagatctga gtaagaagac tctatctcta cttcttcttg
     2581 tgccccgaga ttatttatta tatttaagag attaaatcct ctagcgcatt gcgatgcatt
     2641 gatattcaat ctttttaatt ctgttgctag aattctaagg gtatcagcag taggaatgcc
     2701 aattttttct ttccattcag aaattatgtt agtaaccgta ccggcactga tcgatatatc
     2761 gctagcgatt ttatcccttt gttcaccact tagccatttc cttatgacct cttcttttat
     2821 gtaaataggc acttgttgcc tcattctata agaatagcat tattatttct tctatataaa
     2881 tattcgtcat aatcgtcaa
//
LOCUS       DATABJ010000219         2124 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1041889, whole genome shotgun sequence.
ACCESSION   DATABJ010000219 DATABJ010000000
VERSION     DATABJ010000219.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2124)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2124)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2124
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1041889"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            722..2089
                     /locus_tag="VHF44_03625"
     CDS             722..2089
                     /locus_tag="VHF44_03625"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124674.1"
                     /translation="MIFIVSILIIVGYISSSELLSMKKKNVHSTVVPENKAISFIAKG
                     PIVSLLYNEGASTSTFDGNHYEGNKPSSKSPLASGGLFATNSDSNLTDSIMAPSDAIY
                     DNRTLDSNNIDLLTKIIISSTYNTNRTEEHESSTKQFVLTAKMEPQILSGNWIFKVDQ
                     GIIKDFKAKFTMVRMNGTERNFYELYNFRPDLKDYVHISASSRVNIINAKIDIKLNDE
                     NIWKDVNCTIAISKDNIIKITLNSRLIENQFNNQPIYGIIESFEAKDGNPKTIEDLVG
                     ERSTKAVSESRSYVRTNTTQVIFEIIDSLKKQSSHDIIDRNTTREGHLDQFYTDADNL
                     PYDMSRDSSIAERHTNVIIVKGADNPSNERFFYPQNLFVRPGSTITWLNQDSAIHTAT
                     STNGKEIITDYIFDTDFIQTGQSSKPIRMPQQEGLISYYCKLHPFMTGTVTVRSTSDG
                     TIDVG"
BASE COUNT          769 a          355 c          358 g          642 t
ORIGIN      
        1 catctgaggg cgcagttact cttcctctac gataggattg caattcatca agaaaatgcc
       61 aatcatatca ttcatcatac tttgttcagt ttttctaacc atttactaca ccatttaaat
      121 cgcataaaat catcacaagt atgatcataa gattaatcag tgctctgaat tattaggata
      181 tcgtcagaca tactcaaagg attctggttt ctaatctcag ttaaggatag tttatcgact
      241 gtcttgtaga gatgctgaag ataaaatgtc tgctgataga ttagtatatt ttaaatgata
      301 atcgagacta aaacaagtaa agcattgacc attcctctac atttttcttt tatcccaatg
      361 atgcatcata ttccattata atatagcttt tatttttatg attaacatat taagcctatg
      421 ccattgatcg atgatgatct gatctattag agattgtcga actattgagc acaatacgta
      481 gtttattgct ttatacaggc gtactagaaa ctctttagcc tcctaaatca taaataaaca
      541 agaaatagca tgatcactac gcatttttgc gttctttgtc tccctctttc tataaatcta
      601 ctcaagtgca ttaatggctg ctccatgtat tattttgtta tgttcctgat taattaatat
      661 agacgtaaac atgttaaaaa gattccagca cttttatttg atgaaaaaga aagtttcaat
      721 tatgatattt atagtaagta ttctgattat cgttggatac atatcttcgt ccgaattgct
      781 ttcgatgaag aagaagaatg tacactctac cgttgttccg gaaaataagg ctatttcgtt
      841 tattgccaag ggacctatag tatctctatt atataatgaa ggtgcatcca catcgacctt
      901 cgatggaaat cattatgaag gaaataaacc atcatctaaa agcccattag catctggtgg
      961 attgtttgct acaaacagcg attccaattt gactgacagc attatggcac cttctgatgc
     1021 aatatatgac aatagaacat tagatagcaa taacattgat ttattgacaa agatcataat
     1081 aagctcgaca tataacacaa ataggaccga agaacacgaa tcatcaacaa agcaatttgt
     1141 actgactgcg aaaatggagc cgcagatcct aagtggaaat tggatattta aagtagatca
     1201 aggaatcata aaagatttca aagcaaaatt taccatggtt agaatgaatg gaacagaacg
     1261 taatttttat gaactttata attttcgacc agatctgaaa gattatgttc atatatcagc
     1321 atcttctcga gtaaatataa ttaatgcaaa aatagacatt aaattaaatg atgagaatat
     1381 ctggaaagac gttaactgta ctatagcgat tagtaaagat aatataataa aaattacgtt
     1441 gaattcacgg ttaattgaaa atcaattcaa taatcagcca atatatggta taatagaatc
     1501 tttcgaagca aaagacggca atcctaagac aatcgaggat ctagtgggtg agagaagtac
     1561 aaaagcagtt agtgaaagta gatcatatgt tagaactaat acaacacaag ttatctttga
     1621 aattatagac tcattaaaga aacagtctag tcatgacata atagacagaa atacgacgcg
     1681 tgagggacat ttagatcaat tctatactga tgcagataat ttgccttacg atatgtccag
     1741 agacagttca atagcagaaa gacatactaa tgtcatcatt gtaaaaggag cagataatcc
     1801 gtcaaacgag aggttcttct atccgcagaa cctatttgta aggcctggaa gtacaatcac
     1861 gtggcttaat caagatagcg caatccatac tgcaacgtcg actaatggta aagaaataat
     1921 aactgactat atatttgata cagactttat ccaaaccggc caatcgagca aaccgataag
     1981 aatgcctcaa caagagggcc taatttcata ctattgcaaa ttacatccat ttatgaccgg
     2041 aacagtgaca gtgaggtcaa catcagacgg aacgatagat gttggataat ttaccatggt
     2101 tagatgaatg gaacagaacg taat
//
LOCUS       DATABJ010000220         2789 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1913706, whole genome shotgun sequence.
ACCESSION   DATABJ010000220 DATABJ010000000
VERSION     DATABJ010000220.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2789)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2789)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2789
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1913706"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(118..1668)
                     /gene="guaA"
                     /locus_tag="VHF44_03630"
     CDS             complement(118..1668)
                     /gene="guaA"
                     /locus_tag="VHF44_03630"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003922 - GMP synthase
                     (glutamine-hydrolyzing) activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016462 - pyrophosphatase activity
                     [Evidence IEA];
                     GO_process: GO:0006177 - GMP biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEX2124675.1"
                     /translation="MENNRNMDKIIVLDFGSQYSHLICRRIREVNVYCELLPYNTQAK
                     VLKELNPKGIIFSGGPASIYSKDSPKPDKDIFEMNIPILGICYGQQVLINNFEGTVKR
                     SSIREYGRAELVIDDKSDLFKNIEKNIKCWMSHGDAADKLPKGFKVIAHTDNSFSASI
                     ANQQKKFYGIQFHPEVVHTEKGIDILKNFSQNISMAKADWNMENFIDIAIKDIRKHVK
                     NEKVLCAVSGGIDSTTVAALLHRAIGDSLHCVFVNHGLLRKDEENLVSKLFKEHLGIQ
                     VIYIDAEKQFLQKLKGIKDPEKKRKIIGEEFANVFVDVANKNGPFEWLAQGTLYPDVI
                     ESGVSRGPAAVIKTHHNVGGLPKWLNMKVIEPLSNLYKDEVRIVAKLLGIPDVLLKRH
                     PFPGPGLAVRIIGEVTSEKIRIAKHAGEIVEYELKVAGFYEKVWQAYAAVGDDRAVGV
                     LGDERVYGHIVIIRVVESVDSMTADWTRLPYELIERISNRITNEVENVTWVTYAVSSK
                     PPATIEPQ"
     gene            complement(1658..2341)
                     /locus_tag="VHF44_03635"
     CDS             complement(1658..2341)
                     /locus_tag="VHF44_03635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124676.1"
                     /translation="MSNFSEDDVRRAAEIREWLVKQISDRQEEIERLRTTLLLIDNLL
                     KHGSFRSASNITSSVTLSPSASAEAPVNAAKISNPIKQQRTATTANSMAETITNGSEP
                     QATNEVKEFRPLKRVKDNLLLANAELLPNSVEIVPAEGIILNVNTPPFRSFFLNRILE
                     GMKTKDAEKVSQKQIKDTESLNYQVEEDTNGSIKKIIIINYREKERLNEIFNTSTWVF
                     TRMIEKSGK"
     gene            complement(2435..2602)
                     /locus_tag="VHF44_03640"
     CDS             complement(2435..2602)
                     /locus_tag="VHF44_03640"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124677.1"
                     /translation="MFGQRQAIGILGMIFAIVGGIAWFFQQTFFAIMLWGAAAIILLK
                     LNKKNQRRAKR"
     gene            complement(2604..>2789)
                     /locus_tag="VHF44_03645"
     CDS             complement(2604..>2789)
                     /locus_tag="VHF44_03645"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124678.1"
                     /translation="IHIGKYSKKVVEDVELKKKKLRAGKHLLEMLAKQSRSRLFDTSK
                     RPIRGFTSFYDITINND"
BASE COUNT          794 a          547 c          410 g         1038 t
ORIGIN      
        1 agtgtactct agaatcaaaa ataattatta ttaacactcg gtatatcttg tcaatttcat
       61 aaatcaaata aaaaaattca agtgtctggt ttgtaaagta gaagtgtttt cttattctta
      121 ttgaggctca attgttgctg gaggcttgct tgaaacagca tatgtaaccc atgtcacatt
      181 ttctacctca tttgtaattc tgttgctaat tctttcaatt aattcataag gcaatctagt
      241 ccaatcagct gtcatagagt ctactgattc tactactctg attatcacaa tatggccata
      301 aacacgttcg tcaccgagaa ctcctactgc tctgtcatct cctactgcgg catatgcctg
      361 ccagactttt tcataaaatc ctgcaacctt taattcatat tcaactatct cacctgcatg
      421 ttttgctata cgtatctttt cgctggtcac ttctccaatt attctaactg ccaatcctgg
      481 cccaggaaat ggatgtctct ttaatagcac atctggaata ccaagtaatt ttgcaactat
      541 cctaacttca tctttatata aattgcttaa tggttctatt actttcatat taagccattt
      601 tggaagacca ccaacattat gatgagtctt gattactgct gctggacctc ttgaaactcc
      661 actttcaata acatcaggat aaagcgttcc ctgtgctagc cattcgaatg gtccattctt
      721 atttgctaca tcaacaaata catttgcaaa ttcttcgcct atgatctttc ttttcttttc
      781 gggatcttta atccctttca atttttgcag aaactgtttc tctgcatcaa tatatattac
      841 ttgaatacca agatgctctt tgaatagttt actaaccaaa ttttcttcgt cttttcttaa
      901 taaaccatga ttaacaaaaa cacaatgtaa actgtcacct atggctctgt gtaacagagc
      961 agccacagta gtagaatcaa ttcctccact tactgcacat agtacttttt catttttaac
     1021 atgctttcga atatctttta tggctatgtc tataaagttc tccatattcc agtcagcttt
     1081 tgccatactg atattttgag aaaagttttt taaaatatca atcccttttt ccgtgtggac
     1141 tacctcagga tgaaattgta ttccatagaa tttcttttgc tgatttgcaa tagaagccga
     1201 aaatgaatta tctgtatgag caataacttt gaatcctttt ggaagcttat cagctgcatc
     1261 tccatgactc atccaacatt ttatattctt ctcaatattc ttaaaaagat cagacttgtc
     1321 atcaattacc agttcagcac gaccgtactc tctgatgctt gaccttttta cagtaccttc
     1381 aaagttattt attaatactt gttgaccgta gcaaattcct aatataggaa tattcatttc
     1441 gaaaatgtct ttatcgggtt ttggcgaatc ttttgaataa atactcgcag gacctcccga
     1501 gaaaattatt ccttttggat tgagttcttt aagaactttg gcttgagtat tatacggtaa
     1561 tagctcacag tatacgttta cttcacgtat acgtctacag atgagatgac tatattggga
     1621 gccaaaatcc agaactatta tcttatccat attcctatta ttttccactc ttttctatca
     1681 tccgtgtaaa gacccatgta gaggtgttaa atatctcatt tagacgctct ttttctctgt
     1741 agttaattat tatgattttt tttatagaac cattagtatc ttcttctact tgataattta
     1801 gtgattctgt atctttaatc tgcttctgac ttactttttc tgcatctttt gttttcattc
     1861 cttctaaaat tctattcaaa aagaaagatc tgaaaggagg agtattaaca ttgagtatta
     1921 ttccttcagc tggtacgatt tcaactgagt ttggtaataa ttccgcattt gcaagcaata
     1981 agttatcttt aactcgtttt aatggtctaa actctttaac ttcatttgtg gcctgtggtt
     2041 cagagccatt tgtaattgtt tctgccatag aattagcagt ggttgccgtc ctctgttgct
     2101 tgatgggatt agatattttt gcagcgttga ctggcgcctc agctgatgct gagggcgata
     2161 gagtaactga ggatgtgata ttagaagcgg atctaaaact gccatgtttt aacagattat
     2221 caataagtaa tagtgtagta cgtaatcttt caatttcttc ctgtctgtca gaaatctgtt
     2281 tgacgagcca ttcgcgtatc tcggcagcgc gcctgacatc gtcttctgaa aagttggaca
     2341 tttgcaacgc atctttgaca taaatggtat aatagtattt cagcttgatc atttatgata
     2401 ataaaattat aatcaatata tgaataaatt tcctctatct cttcgctctt ctttgatttt
     2461 tcttattaag ttttagtaat ataattgcag ctgctcccca tagcattatt gcaaaaaatg
     2521 tctgctggaa gaaccatgca ataccaccta ctattgcaaa aatcatgcct agaataccaa
     2581 ttgcttgcct ttgaccaaac attttaatca ttattaattg ttatatcata aaaactagta
     2641 aaccctcgaa ttggtctttt agatgtatca aataaacgtg aacgtgattg tttagcaagc
     2701 atttcaagca ggtgtttacc agctctcaat ttcttttttt tcaattcaac atcttctacc
     2761 actttttttg aatatttgcc tatatgtat
//
LOCUS       DATABJ010000221         1748 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_598988, whole genome shotgun sequence.
ACCESSION   DATABJ010000221 DATABJ010000000
VERSION     DATABJ010000221.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1748)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1748)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1748
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_598988"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..286
                     /locus_tag="VHF44_03650"
     CDS             <1..286
                     /locus_tag="VHF44_03650"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124679.1"
                     /translation="QKVEEETEDAKLKQHQVLQNYDVTMDILDEYKRDKPLIDHIKKL
                     EKKLEEEVEEKNYLAEELASKESEIEDLESEIDILRSKPSSSEYESISPE"
     gene            complement(326..1684)
                     /locus_tag="VHF44_03655"
     CDS             complement(326..1684)
                     /locus_tag="VHF44_03655"
                     /EC_number="1.4.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012434.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Glu/Leu/Phe/Val dehydrogenase"
                     /protein_id="HEX2124680.1"
                     /translation="MNNNNNNDSPLTSMRSPSSAWEEMDEWGPEKVLQVYDPDTGMKG
                     VLVIDNTATGPGKGGIRFAQSVTPLEVFKLARTMTWKCAAAGLQFGGAKGGIIADPNK
                     VDRVAWMKSFAKMIRPYCPSQYIAATDVGTTELDMAVFAHEIGDMRACTGKPTEVGGI
                     PHELGTTGYGVSVALEAALELLQDPKNSTADNITSSSSKKEQRRDKEMRVTIQGFGNV
                     GSFTARFLDDLAGIKIVGVSDVSGFIYDKDGLNIPRLMIDMRGKTKLSDLRNKSQQQG
                     KNNNKNSSSNYHHYYDIRDKDEIFEVDSDIFIPAAMGGVINDKTAPKLLEHGIRIIVE
                     AANIPTLPSADEYLNKNGVWIIPDFLANAGGVIGSFVEYQGRTEKEAFDLISYKITKN
                     IKQVLAEAIVQKDKSEYHEAQNPRKIATEMAKQIVYRAMLLRKGAINVAREAYDRKDR
                     IL"
BASE COUNT          534 a          351 c          282 g          581 t
ORIGIN      
        1 gcagaaagtg gaggaagaaa cagaagacgc aaaattaaaa caacatcagg tattgcagaa
       61 ttacgatgta actatggata ttcttgatga atacaaaaga gataaaccat taattgacca
      121 tattaaaaag ctagaaaaaa aattagaaga agaagtagaa gaaaaaaact atttggctga
      181 agagcttgct agcaaagaat ctgaaataga agacttagaa tctgaaatag atatcttaag
      241 atctaaacct agtagttctg aatatgaatc aattagtcct gaataaggtt agtcaaataa
      301 atagtataat gtataaataa ataattcaaa gaattctgtc tttcctatca taagcttccc
      361 tggcaacgtt tattgctcct tttcttaata gcatggctct atatactatt tgtttggcca
      421 tttcagtagc tatttttcta ggattttgtg cttcatgata ttcgctttta tccttctgta
      481 cgatagcctc tgcaaggact tgttttatat tcttagttat tttgtaactt ataagatcaa
      541 atgcttcctt ctctgtcctc ccttgatatt caacaaagga tcctataaca cctccggcat
      601 tagcaagaaa gtccggtata atccaaacac cgtttttgtt aagatattca tcagcactag
      661 gtaatgtagg aatatttgca gcctctacaa taattcttat accgtgctca agcagttttg
      721 gtgctgtctt gtcatttatg actcctccca tggctgctgg aataaaaata tctgaatcga
      781 cttcaaatat ctcatcttta tctcggatat cataataatg atgataatta gaagaactat
      841 tcttgttgtt gttttttcct tgttgttggc ttttattcct aagatctgaa agttttgttt
      901 ttccccgcat gtctatcatc agtctaggaa tattcaatcc atctttatcg tagataaacc
      961 ctgaaacatc acttacacca actatcttaa ttcctgctag atcgtctaag aatctggctg
     1021 taaatgagcc aacatttcca aatccttgaa ttgtgactct catctcctta tctcttctct
     1081 gttccttttt tgaggatgag gaggtgatat tgtcagcagt cgagtttttt ggatcttgta
     1141 aaagttcaag agctgcttct aaagctacgc ttactccata accagtcgta cctaattcat
     1201 gtggtatacc accgacttct gtaggctttc cagtacaagc tcgcatatcc cctatctcgt
     1261 gagcaaatac tgccatatca agctctgtag ttccaacatc tgttgcagca atatactgtg
     1321 atggacaata aggtctaatc atctttgcaa aagacttcat ccaagccact ctatcgacct
     1381 tattgggatc agctattata cctccttttg caccaccaaa ttgaagacca gcagcagcac
     1441 atttccatgt catagttcga gcaagtttga aaacttctag tggtgtaaca ctttgagcaa
     1501 atcttattcc tccctttccc ggtcctgtgg ctgtgttatc aattactaaa actcctttca
     1561 ttcctgtatc agggtcatag acctgcaaaa ccttttcagg cccccattca tccatttcct
     1621 cccatgcaga cgaaggcgat cgcatactag ttaatgggga atcattgtta ttgttgttgt
     1681 tcatatatga ctatcaatat atgataatca ataatatttt attctaacaa atgcgaaaga
     1741 accaagag
//
LOCUS       DATABJ010000222         2570 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1261696, whole genome shotgun sequence.
ACCESSION   DATABJ010000222 DATABJ010000000
VERSION     DATABJ010000222.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2570)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2570)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2570
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1261696"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..310
                     /locus_tag="VHF44_03660"
     CDS             <1..310
                     /locus_tag="VHF44_03660"
                     /inference="COORDINATES: protein motif:HMM:NF013595.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124681.1"
                     /translation="YVTNTGSNTVSIINGTTNALVETIPAGLGPNGLTYNQNNGDVYV
                     ANSINGTISVINGLTNIVYSTIPIGINNNPNGISYNSTNNTLFTTNSNSNTVSVVKNK
                     "
     gene            606..1073
                     /locus_tag="VHF44_03665"
     CDS             606..1073
                     /locus_tag="VHF44_03665"
                     /inference="COORDINATES: protein motif:HMM:NF022072.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2124682.1"
                     /translation="MATIQYETDINAPVEKVYEYYTNPDNIKEAWPRDIVKESESVSG
                     SKGEEGSEMKVKGQYMGKEEEMRLEVAQKEQNRRLVTRQTEGPFKKWESIQEFEGREG
                     GNSTHIRHSIDYELPTTGKIANMLSGSQADNKIRKGLEQAAQTVKQKLESGQA"
     gene            1364..2218
                     /locus_tag="VHF44_03670"
     CDS             1364..2218
                     /locus_tag="VHF44_03670"
                     /inference="COORDINATES: protein motif:HMM:NF016300.4"
                     /note="The SIMPL domain is named for its presence in mouse
                     protein SIMPL (signalling molecule that associates with
                     mouse pelle-like kinase). Bacterial member BP26, from
                     Brucella, was shown to assemble into a channel-like
                     structure, while YggE from E. coli has been associated
                     with resistance to oxidative stress; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIMPL domain-containing protein"
                     /protein_id="HEX2124683.1"
                     /translation="MISILDTNIKIKTGTPLSILRPTSSTNIIMTTLGFLTTLALVII
                     FVSQIDTASAQTTPIQNTNANVTDSNSTLSVSGTAFTKVKPDRVVISIGVETTNKTAK
                     ASLAANSESMNKIISALRNLGVKENETSTSSFTISPNYNYTESGTILNITGFTVTNSV
                     QIDSSTLANVSTWIDAAVASGANSINSIDFRISNKKLEDTKNMLIKDAIANAREKANI
                     VSPELGLKVIGVKSITVGEFGYIQPPQPFMEKRFDAAGAGAATATTPILAGEQEVSAS
                     VSIVFLIS"
     gene            2389..>2570
                     /locus_tag="VHF44_03675"
     CDS             2389..>2570
                     /locus_tag="VHF44_03675"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124684.1"
                     /translation="MKYNLAYQLITDILSQKDILLSVNSGGGICEAKVEEGLSFKIKE
                     KWATIGDEYAMVYLHP"
BASE COUNT          953 a          393 c          433 g          791 t
ORIGIN      
        1 ttacgtgaca aacacaggct caaatactgt ttctataata aatggtacaa ctaatgcatt
       61 ggttgaaact attccagcag gtttaggacc taatggcctt acatacaacc aaaataacgg
      121 ggatgtttat gtagctaatt ctattaatgg aaccatatct gtcataaatg gtttaacaaa
      181 tatagtctat agcactattc cgataggtat caataacaat cctaatggca tatcatataa
      241 ttctaccaat aatacgttat tcactacaaa ctctaattca aatacggttt cggtagtcaa
      301 gaacaaataa agctacggtt attttttaaa gaatcaccaa ttgaaagtaa gacctattgc
      361 gagcttaatt taaagatgtg gtttggtgaa atgtgagata ggcctattta actctatttg
      421 caactaaaaa gtgcgcactt ataataaaaa acaaataata ggttgaattt attatgcata
      481 catatacata aaaaattcga tacgactgac tattataata tgtaattttg tatattatta
      541 tatatacgtc tatgtgtgtg tgatagttac agcatttaaa agtgatgtaa tctactaagg
      601 ctgttatggc aactattcaa tatgaaacag acataaatgc accagttgaa aaagtatacg
      661 aatattatac taatccagac aatatcaaag aagcatggcc acgtgatata gtcaaagaat
      721 cagaatcagt ttcaggttca aaaggtgaag aaggctctga aatgaaagta aaaggtcaat
      781 acatgggtaa agaagaagaa atgagacttg aagtagcaca gaaagaacaa aatagaaggc
      841 tagttacaag gcaaacagaa ggaccattta agaaatggga aagtattcag gaatttgaag
      901 gacgtgaggg aggaaatagt acacatatta ggcattcaat tgattatgaa ttaccaacaa
      961 ctggaaaaat tgcaaatatg ctttcaggta gccaagcaga taataaaata agaaaaggat
     1021 tagaacaggc tgctcaaaca gtaaagcaaa aactagaatc aggtcaggct tagttattaa
     1081 ttaggatgag agagaggaaa atttcctcct ttgcagatat acctttcact ttgtaatatt
     1141 tgatagaagt atgcatttgt ctagttagca agtttggtag tatacattgt gctatcactc
     1201 gaaaattaga attcttatct tactatagaa cagagttggt ttaattttgt caaattcaat
     1261 tagtacgtat tgactgcgat atcgtatcgg tttttttatc atatcaagtc attatataaa
     1321 tctatatgta tatatatatg ctaaaataat tagaaaaatc tatatgatat cgattctgga
     1381 cacaaatatt aaaattaaaa caggaacgcc cttatctatt cttcgtccaa cttcttctac
     1441 taatattatt atgactacct taggattcct gactacattg gcactggtaa ttatttttgt
     1501 gtcacaaatc gatactgcat cagctcagac cacaccaatt caaaatacaa acgctaatgt
     1561 tacagatagc aatagcacat tatctgtttc tggaactgca tttacaaaag taaagcctga
     1621 tagagtagtc atttcaatag gagttgaaac aacaaacaaa acagcaaaag catctctagc
     1681 tgcaaattct gaatcaatga ataagattat ttctgcatta agaaatttag gtgtaaaaga
     1741 aaatgaaact agtacttctt catttactat atcacctaac tacaattata cagaatcagg
     1801 aactatactg aatataacag gatttactgt aactaattct gtacagattg atagctcaac
     1861 tttagccaat gtgtcgactt ggattgatgc agccgtagca tcaggagcca atagtataaa
     1921 cagcattgat tttagaatat ccaataagaa attagaagat actaaaaata tgcttattaa
     1981 ggatgcaatt gccaatgcaa gagagaaagc taatattgta tctccagagc ttggattaaa
     2041 agtaattgga gttaaatcaa taactgttgg tgaatttggc tatattcaac ctccacaacc
     2101 atttatggaa aagagatttg atgcagctgg tgctggtgcc gccaccgcta caacacctat
     2161 tcttgccgga gaacaagagg tatctgctag tgtaagtatt gtttttctca ttagttgatt
     2221 cacaacatta ttagtgttag tgatcaactt agcattactt tctttgaatt ggattacatc
     2281 tataaagcat ccataaccct tctgctttat gaatctgatt ttatggctat ttcttatatt
     2341 ttttgcttat aaaatcatat aaagccacta tattctatta tataaggcat gaaatataat
     2401 cttgcttatc agttaattac agacatctta tctcagaaag atatactttt atcagttaat
     2461 agcggaggtg gaatatgcga agcaaaagta gaagaaggcc tatcttttaa gattaaagaa
     2521 aaatgggcaa caattgggga tgaatatgcc atggtctatc ttcatcccca
//
LOCUS       DATABJ010000223         1819 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1044795, whole genome shotgun sequence.
ACCESSION   DATABJ010000223 DATABJ010000000
VERSION     DATABJ010000223.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1819)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1819)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1819
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1044795"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1049
                     /locus_tag="VHF44_03680"
     CDS             <1..1049
                     /locus_tag="VHF44_03680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-grasp domain-containing protein"
                     /protein_id="HEX2124685.1"
                     /translation="QFLTDATNVSPDHPIVISKFLQDASEVEVDAVADGNEVVIGSLI
                     EHIDNAGIHSGDAIMCIPPWRLDRKTIETIIDYTTRIGKALQIKGPFNIQYLIKDDEV
                     SVIEANVRASRSMPFVSKFVGINLIDLSARAMTGNPLPINAKDLWLIAKGFGIKVPQF
                     SFMQLEGADIVLSVEMQSTGEVACFGESFYDALSKAYLAAGYSLPLSGSALITIGGQK
                     NKEKLLPLISLISAMGYNIMATEHTAEFMENNKFKNVQQVYKISEPDRKPNISDLLFE
                     RKINFIVNIPSTSTIEKYVGMLYDEYQIRRKAVELGIPVLTTIESASSFIKTLEWLKT
                     NAPTLAALKSYVRL"
     gene            complement(1095..>1819)
                     /locus_tag="VHF44_03685"
     CDS             complement(1095..>1819)
                     /locus_tag="VHF44_03685"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEX2124686.1"
                     /translation="DEDIKRQRYMVISDLHIGFESYIYTRGIAFDERIFFDEMIQELS
                     DLIKSNKAQAVILLGDLKSTVGSISRQEWQKIPRFFKLLSEITDIYFVPGNHDSNIRF
                     LMPENINVMSSKGMVLDDTLLVHGHTMPTTARSYIKKIVMGHIHPVFLRHNSVINGQR
                     VWIYLKIIKEAIFPGSQGTLDLIILPAYNRYLYAINERRYTKSISPIIDKAIKSNAVQ
                     QALVVSLDGSIVGGIETLLKII"
BASE COUNT          597 a          331 c          329 g          562 t
ORIGIN      
        1 agcaattttt aactgatgca acaaatgtta gtcccgacca ccctatagta ataagtaaat
       61 tcttacagga cgcctcagaa gtcgaagtcg acgcagtggc tgacggaaat gaagtagtaa
      121 taggctctct tatagaacat atcgataatg ctggcattca ttcaggtgat gcgataatgt
      181 gcattcctcc ttggagactt gacaggaaaa ctattgaaac aattatagat tataccacaa
      241 gaataggtaa agctttacaa ataaagggac catttaacat acaatattta ataaaggatg
      301 acgaggtgtc agtaattgaa gcaaacgtta gggcttctag atcaatgccc tttgtttcaa
      361 agtttgtagg aataaatttg attgatctat ccgcccgggc aatgacagga aatccacttc
      421 ccataaatgc caaagatctt tggttgatag ctaaaggttt tggaatcaaa gtcccacaat
      481 tttcttttat gcaactcgaa ggtgcggata ttgtgttaag tgtagagatg caatcaactg
      541 gagaagtcgc atgctttgga gaaagctttt acgatgcttt atcgaaagcc tacctggcgg
      601 ctggttattc acttccttta tctggctcgg ctctaattac aattggagga cagaaaaata
      661 aggagaaatt gctgccatta atatcactaa tatcagctat gggatataat attatggcaa
      721 ctgagcatac agcagagttt atggaaaata acaaattcaa gaacgttcaa caagtttata
      781 agataagcga gccagatcga aaaccaaaca tttcagatct gttatttgag cgaaaaatta
      841 actttatagt gaacatccct tctacctcta cgatcgaaaa atatgtagga atgctatacg
      901 atgaatacca gataaggaga aaggcagtag aattaggcat acctgttctg actactatcg
      961 aatctgcttc ctcttttatc aaaacactgg agtggttaaa aacaaatgct cctactctgg
     1021 ctgcgctaaa atcttatgtc agattataac taagatttat caacactccc tgaaatatga
     1081 gatataattc aaagttaaat tattttcagc aaggtctcaa taccaccaac tatggaacca
     1141 tccaatgaaa cgaccagggc ctgctgaact gcatttgact ttatggcttt gtcgattatc
     1201 ggagaaattg attttgtata gcgcctttca ttaattgcgt aaaggtatct gttataggca
     1261 ggaagtatga ttaggtcaag agttccttga cttccaggaa atattgcctc ttttattatt
     1321 ttaagatata tccatactcg ctgtccatta attacgctat tatgtctaag aaacacagga
     1381 tgaatatgtc ccataacgat tttttttata tatgacctag cagtcgtcgg catggtatgg
     1441 ccgtgaacca gaagcgtatc atccagaacc attcctttgc tgctcatgac gtttatattt
     1501 tctggcatta agaaccttat attactgtca tgattaccgg gtacgaaata aatatctgta
     1561 atctcagaga gaagtttgaa aaaacgaggg attttttgcc actcttgtct actgattgac
     1621 ccaactgtgc ttttcaaatc accaagtaag attacagcct gtgctttatt agatttaata
     1681 agatctgata attcttgaat catttcatca aaaaatatcc tttcatcaaa agcaattcct
     1741 ctagtatata tataagattc aaaccctatg tgtaaatctg atattaccat atatctttgt
     1801 ctttttatat cttcgtcaa
//
LOCUS       DATABJ010000224         1687 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1048535, whole genome shotgun sequence.
ACCESSION   DATABJ010000224 DATABJ010000000
VERSION     DATABJ010000224.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1687)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1687)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1687
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1048535"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..466
                     /locus_tag="VHF44_03690"
     CDS             <1..466
                     /locus_tag="VHF44_03690"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124687.1"
                     /translation="AMQVNHLNDTDPIIASKAIQLAQLIENELSMCVLDHVINPQADL
                     GAHFIRSIEKSGLNIFEINISELFNIIDSALKIGYSGNLKHDKTNNVISIQSRTDTKT
                     VLPWALLLSSFFKRIGYESKIMQNSKQITSPETIHLKLSKPIPELNQKVSSL"
     gene            complement(429..1295)
                     /locus_tag="VHF44_03695"
     CDS             complement(429..1295)
                     /locus_tag="VHF44_03695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0052855 - ADP-dependent NAD(P)H-hydrate
                     dehydratase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HEX2124688.1"
                     /translation="MPDVVTVNSKLVKELVVPRLSSSKKGDNGIVLVVGGNKFYHGAP
                     VLSSMAALRSGTDIVYTAVPRSISIAVRSFSPNIIALPMSDDKLTIGSANRLVAMIPK
                     KPNTAAIGMGMSLARPEALHSLITKLKSSGTRLLLDSSSLVPAALKDISGTDTIITPH
                     AGEYKRIFGENAGADEKERISNVYKYAKEYDITILLKGQTDIISDGDRVAINKIHNCA
                     MSVGGTGDILSGLTAGLLTKMKPYEASILGIYFNGLAGNLAYDQVGLHMVATDLLEHI
                     PKAMKPFDSVQE"
BASE COUNT          531 a          304 c          282 g          570 t
ORIGIN      
        1 tgcaatgcag gttaaccatt tgaatgacac agacccaatt atagcatcaa aggcaattca
       61 acttgcacaa ttgattgaaa atgaattatc tatgtgtgta ttagatcatg taattaatcc
      121 gcaggcagat ttgggagctc actttatcag atcaattgaa aaatcagggt taaacatatt
      181 tgagatcaac attagcgaac tattcaatat tattgattct gccttaaaaa ttggttattc
      241 aggaaactta aaacatgaca aaacaaacaa tgtaataagc atccagtcaa gaactgatac
      301 caaaacagtt ttaccatggg cattattact ttcttcattt ttcaaacgca ttggttatga
      361 gtctaagata atgcaaaatt ctaaacaaat aactagccct gaaaccattc atcttaagct
      421 ttcaaaacct attcctgaac tgaatcaaaa ggtttcatcg ctttaggtat atgttctagc
      481 aaatctgttg ctaccatatg caagcctact tggtcatatg ccaaattgcc tgctaatcca
      541 ttgaaataaa tacccaaaat agatgcttca tacggtttca tttttgttaa taatcctgct
      601 gtcaagccag ataatatgtc gccggttcct cctactgaca ttgcgcaatt atgaatctta
      661 tttatagcca ctcgatctcc gtctgaaatt atatctgtct gccctttaag taatattgtg
      721 atatcatact cttttgcata cttatagaca tttgatattc tttctttttc gtctgcgcct
      781 gcgttttctc caaatattcg tttgtattct cctgcatgcg gagtaatgat tgtatcagtt
      841 ccagatatat ccttaagagc agcaggcact aaagatgagg aatctagcag tagccttgta
      901 cctgagcttt ttagtttagt aatgagtgaa tgcaatgcct ctggccgtgc tagactcatg
      961 cccataccga tagcagctgt attaggtttt tttggaatca ttgcaacaag tcgatttgct
     1021 gaacctatag ttaatttatc gtcagacatt ggtaatgcta ttatatttgg agaaaaggat
     1081 ctgactgcta tactgattga tcttggaact gctgtgtaaa caatatctgt cccggatctt
     1141 agagcagcca tagaagatag aactggtgcg ccatgataaa acttgtttcc tcctacaaca
     1201 agaacaatac cattatcacc ttttttggat gaggataggc gtggaacaac gagttctttt
     1261 acaagtttac tatttaccgt gactacgtct ggcaattcac ttcataagat cttgtaaaga
     1321 cgaataaact ttatcaatcc agcgataaga tatttagcaa tacatatata gataatgcac
     1381 tcttgcgata gttttttcta atagataatt ttcgttcgta ggcatacaga attgttactt
     1441 attgcttaat tgttcataat atgattcact tgctgtcaaa agcaaacctt gattttatta
     1501 tttttaattt tctcatatat aatgtattag ataatgtata taatcatcct acataagttg
     1561 aagtcaatac tgtttctgtc tgtgactcca tgattgattt atatttggat agatttactt
     1621 cagagatccg ctggcttaga atacataagg tcagttggaa ataacagggc aggaaaaagt
     1681 atggata
//
LOCUS       DATABJ010000225         3318 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1919919, whole genome shotgun sequence.
ACCESSION   DATABJ010000225 DATABJ010000000
VERSION     DATABJ010000225.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3318
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1919919"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            550..867
                     /locus_tag="VHF44_03700"
     CDS             550..867
                     /locus_tag="VHF44_03700"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124689.1"
                     /translation="MQYHKAAFLGQERSRKAQLKLFDYTGFAMLTYTIKQDKKGFEPV
                     GEEMLVGKITRSDEAMLFICDKDGYAKAQSKPITIQECEEIYQKMIKDGFSEYIGSIK
                     TVS"
     gene            complement(851..1567)
                     /gene="pyrH"
                     /locus_tag="VHF44_03705"
     CDS             complement(851..1567)
                     /gene="pyrH"
                     /locus_tag="VHF44_03705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEX2124690.1"
                     /translation="MNNNNRVLRKKVVIKLSGSIFSEGRNKDTIKRYAEMLTDINIDV
                     QPIVIAGGGKIARHYINLARDLGSDEASLDIMGIEVSRLNAKLLITALGEQAYSQVPK
                     NLDEVTIAAESGKIVIVGGLHPGQSTNATSALIAEKVRAFRFLNATDVDGIYDLDPNT
                     SRNAKLLNEITVNECMEILKDGSSMAGTYDLMDIVALKVIERSKIPTRVLRSDITNIK
                     NAIIGTYHIGTEIVMVKKQS"
     gene            complement(1564..2820)
                     /locus_tag="VHF44_03710"
     CDS             complement(1564..2820)
                     /locus_tag="VHF44_03710"
                     /inference="COORDINATES: protein motif:HMM:NF039904.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEX2124691.1"
                     /translation="MKFTGEITDPVHQYIRFSDVERELVDTPVFQRLRRIRQLAGAHL
                     VYPSAQHSRFEHSLGTMHVAGYAGETLLTKGYLDNEDLVQELRLAALLHDIGHGPFSH
                     LFEEVLEARCKTNHEDMGRKIISYSEVSDIIRKYGYNSSDICKLSFGESNVKFFNEII
                     AGGLSADSMDYLSRDGFFTGVEYGKIDYHRLISSFEIVSNGHLAINRSALYSFESMLI
                     SRYEMFKAVYFHKTVRSAEVMLLHSMTLADEEMGLTDTSLKNYLDLTDEATLERICSL
                     KNGNEIAVKLAIDYKSRKLLKCVYEKFLHKRDKLYRKMDRQALHDLGAQIADAAQVNE
                     SSVFVDASRAPSMPLTPTKKEIRSVLLVDKERAYETPISEIPLIDSITGFLDMLRVYT
                     THENRDVVEHSTRKVLGEEFLSERSI"
     gene            complement(2855..>3318)
                     /locus_tag="VHF44_03715"
     CDS             complement(2855..>3318)
                     /locus_tag="VHF44_03715"
                     /inference="COORDINATES: protein motif:HMM:NF014299.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124692.1"
                     /translation="TPIGIEIRAFLDGKRDYPNELKHILLSANRWEKKKEIENMIDNG
                     TILIMNRYYQSNLVYGIANGLNINWLINLDKGLPKEDITIVIEVSPQTSYQRAVENRD
                     VFEKDHKLLVEVHKNYRKLAKQFKWKIINGEKSKDQVHEEIIKIVRKNLKV"
BASE COUNT         1060 a          617 c          517 g         1124 t
ORIGIN      
        1 ggcgagaggc ataatataat aataatctac ttaaaaatat actagataga gtttattgat
       61 atatgccaaa gatcagtaaa gatgttgtaa caagtattgc tagttcagag tagtcactta
      121 caaaatcagt taaagaatgt atgtgattta aaaatcatct tttcttaata taaatatttg
      181 agtctagaaa gatgttattt ttaataacat cttagataat acacatatag acacaaataa
      241 aaaatagttc ttctttaatc taccaaacat atctacaagg aggctttgag ctttcaatct
      301 tgctagaaat caaatgtcta aacgcataga aagaagattt aaagtcaatt agatattgaa
      361 taataatagt tagaatagca taactaattg tagatattgt tcaaatttgt aagaagtaat
      421 tctgaaagaa agtcatctaa ctttacagac aatggaattt ttactagatc cagaaggctc
      481 tactcaagtg gaatttcaga ataaaaaaag taaggctctt atacataatt gtaaaataaa
      541 ataccataaa tgcaatatca taaagccgct tttcttggac aggaaagatc aagaaaagct
      601 caactgaagc tatttgacta tactggattt gcaatgctaa cttatactat aaagcaggat
      661 aaaaaaggat tcgagcctgt tggtgaggaa atgctagttg gtaaaattac taggtctgat
      721 gaagcaatgt tatttatctg tgataaagat ggatatgcaa aggcacaatc aaaacctata
      781 actatacaag agtgtgaaga aatttatcaa aagatgataa aagatggatt ttcagaatat
      841 ataggctcca tcaagactgt ttcttgacca ttacaatctc agtaccaata tgatatgtgc
      901 caataatcgc attcttaata ttagttatat ctgatcgtaa gactctcgta ggtatttttg
      961 aacgttctat aactttcaat gccacaatat ccataagatc atatgttcct gccattgagc
     1021 tcccatcctt aagaatttcc atacattcat ttactgtaat ttcatttaat aattttgcat
     1081 tcctgctggt atttggatct aagtcataga taccatcgac gtcagtagca tttagaaatc
     1141 taaatgccct tactttttcc gctattaatg cagaggtagc attggtactt tgacctggat
     1201 gtaaaccacc tacaatcact attttaccac tttctgctgc tattgtcact tcgtcgagat
     1261 ttttcggaac ttgggaatac gcctgctctc caagagctgt tatcaacaat tttgcattca
     1321 accttgacac ttctattccc ataatatcta aactcgcttc atcagagcca agatcgcgtg
     1381 caagattgat ataatgacgt gcgatcttac ctccgccggc aataactatt ggctgtacat
     1441 caatgttgat gtctgtgagc atttcagcat atcttttaat agtatctttg tttcttcctt
     1501 cactaaatat gctaccactt aatttaataa ctaccttttt tctgagtact ctattattgt
     1561 tgttcatatg ctcctctccg ataaaaattc ttcaccaagc acctttctag tagagtgttc
     1621 tactacatct ctgttttcat gagtagtgta tactcttagc atatcaagaa aaccagttat
     1681 agaatcgata agtggaattt cagagatagg agtttcgtaa gcccgttctt tatcaacaag
     1741 taatactgat cttatctctt tctttgtagg agttagcggc attgatggcg ctctagaagc
     1801 gtcaacaaaa acagaacttt cgtttacctg tgcagcatcc gctatctgtg ctcccagatc
     1861 gtgtagtgct tgcctatcca tttttctata taatttatca cgtttatgta aaaatttttc
     1921 ataaacacat tttaataatt tcctagattt gtagtctatt gctaatttga ctgctatttc
     1981 gttgccattc ttaagcgaac aaatgcgctc aagggttgct tcatctgtca gatcaaggta
     2041 atttttcaaa gatgtatcag ttaaacccat ctcttcgtca gctagtgtca tagaatgtaa
     2101 taacatgact tctgcagatc ttactgtctt atgaaaatag accgccttga acatttcata
     2161 tctagaaata agcatagatt caaatgaata tagcgcggat ctgttaatag ctaaatgtcc
     2221 gttagagact atctcaaagg aacttatcag ccgatgataa tcaattttac cgtactctac
     2281 tcctgtgaag aatccatctc tagacaaata atccatgcta tccgcagata gtccgccagc
     2341 aattatctca ttgaaaaact ttacattaga ttcaccaaat gataacttgc atatatcgga
     2401 tgaattgtaa ccgtattttc ttataatgtc gctaacctca ctataagata ttatctttct
     2461 gcccatatct tcatggtttg tcttgcaccg tgcctccaat acctcctcaa atagatgcga
     2521 aaatggccca tgacctatat catgaagcaa tgctgccaat cttaattcct gaactaagtc
     2581 ttcattatct aaatatcctt tagtaagtag agtttctcct gcatagcctg caacatgcat
     2641 agtaccaagc gaatgctcaa atctagaatg ttgcgcacta ggataaacca gatgtgctcc
     2701 agcaagttgc ctgattcttc tcaaacgctg aaaaactggc gtatctacaa gttctctctc
     2761 gacgtctgaa aaccggatat attgatggac tggatcagta atttcaccgg taaacttcat
     2821 aattatgaat ggtcattata tgaaatggca gaaattaaac tttaagattt tttctgacaa
     2881 tttttattat ttcttcatga acttgatctt tacttttttc accattaatt atcttccatt
     2941 taaattgttt tgcaagcttg cgatagtttt tatgaacttc taccagcaat ttatgatcct
     3001 tttcaaatac atcacggttc tctactgctc gttggtatga ggtctgggga ctaacttcaa
     3061 tgactatggt gatgtcttct tttggtagac ccttgtccaa gttgatgagc cagttaatat
     3121 taagaccatt tgcaatacca taaacaagat ttgattggta atatctattc attatcaaaa
     3181 tggtgccatt gtctatcata ttttctattt ccttcttctt ctcccaccta ttggcagaaa
     3241 gaagaatatg ttttagttca ttaggataat cacgtttacc atctaaaaaa gcccggatct
     3301 ctattcctat aggtgtag
//
LOCUS       DATABJ010000226         4166 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1920708, whole genome shotgun sequence.
ACCESSION   DATABJ010000226 DATABJ010000000
VERSION     DATABJ010000226.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4166)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4166)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4166
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1920708"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(433..1539)
                     /locus_tag="VHF44_03720"
     CDS             complement(433..1539)
                     /locus_tag="VHF44_03720"
                     /inference="COORDINATES: protein motif:HMM:NF044723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124693.1"
                     /translation="MTAADKRHQEVIKKIKLIMRDVNDDLMVQKTMPVLDVPKVGYDN
                     TIWSDEKRMLTIGNKMIQVSPDSTKKIPTFAQYLVMANAIRRLLDEEMESTIRGMYYA
                     TLSTVGDEKNKQKFWNSQENSDDAIKALELLTGVPREEFSVTSKPKGMISGPITLRVG
                     GDIIDCNLGSRATSQLIPTNIRDVEIVNVKANFVMVVEKDTVLNNIRKSGFIQKYNAI
                     LMTGSGEPDRATRMMVRTLNEEWKKPVVIFADADPWGLGIALRYKIGSESLSYDSDRL
                     VTPNAKVLGMMFSDIYDYNIPEVARLTASDEDMNRANDMKKKPWLQDKQWQRELNLFL
                     KRKEKCELDAFFKHGFKYLAETYMPQKLREVGLI"
     gene            complement(1540..3525)
                     /locus_tag="VHF44_03725"
     CDS             complement(1540..3525)
                     /locus_tag="VHF44_03725"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: protein motif:HMM:NF003218.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase VI subunit B"
                     /protein_id="HEX2124694.1"
                     /translation="MKKTTAELAQSQMKPESTVIAIPNNGKGRVRYDKKAESEFFVDN
                     SALAGFTGERILYMAVRELIENSLDSCETNHILPNISLSLKLLDPENEMWLVSCQDNG
                     IGIPSDKVPVAVCSFLTSGKYVEKQQRGLFGVGLKMIAAFSTKDTDHPLKVWTKTQED
                     GSEYYFELRTDIGTNRPIVLLKRIIKTGESRIQDEYGFRIEAVLRARLSPITKNKIYE
                     YISQTSIVNPYAILTFETDEGKVVFERRTEIMPHPAKEVLPHPGDMDLKTLKKAIIRF
                     MNQKTTLQGVLCNSFQKLSSEKAKEIITKADVDLKTADKYDEHELIKVVNICKQTKFQ
                     APNTEHLSPIGEEILIAGMTSEYTIVTNKENTNSGDQPQQQLSTKVLRPVLTGYSSRT
                     CVVNNRPTIVECGIAYGGDISSFKLHRFANKIPLLYDEGSDVAREVVSEVEINKMGIS
                     KKEVKEQFANPDSKSDRAVELLPIHIFFHICSTKIPYKTAGKESIASEGDLKRYMKAC
                     LADLYRKVSAQIRKELRIKEAESRLRLYKHYIPLIISAISESIKVDSEKLSEAFSQLA
                     EKHVRGESVDTPTDIKADKITGERIEEEADKTNENEILKQDSTKHVIYASREKKKKIK
                     NKTISHKKKSKKYLKKNSESKNRITLDTFNKPKARRI"
     gene            complement(3627..3785)
                     /locus_tag="VHF44_03730"
     CDS             complement(3627..3785)
                     /locus_tag="VHF44_03730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124695.1"
                     /translation="MVKLKDIVDGNIVGSGSDFIVIQKNKKRFLVEMKIIKIQELKNA
                     TTPYGSQF"
BASE COUNT         1219 a          801 c          642 g         1504 t
ORIGIN      
        1 agacgccaca gcctctaata ataagaaaca ttatgaatca acattggaga atgtgaaagg
       61 ttactatgga atagtaatgg atataaaaga gttaagccaa tctctgccac tatcccaact
      121 taatttacta agtaatcgaa atataattta gtattggata aagagacaac ataaaacaaa
      181 ttatgcataa gaaattaagg gcagtctctt tatatttacc tcataacttc tcttgctgct
      241 atttactata tttgtcaact cagactatct acaatcctat attcaatcaa ttgaaaactt
      301 atctgtcata aattgtaagt tggatgagta ttactaataa acatctatca ttagtattag
      361 ctaaattgtt taacttataa acacataatt aaacaaaatg taaatttgaa ttctaaatat
      421 gaagcactga tattagatca atcctacttc tcttaatttt tgtggcatat aagtttctgc
      481 aaggtatttg aatccatgct tgaaaaatgc atccagttca catttttctt tacgtttcaa
      541 gaatagattt aattctctct gccattgttt gtcctgtagc catggcttct ttttcatatc
      601 gttagctcta ttcatatctt catcagaggc tgtcaacctt gccacttcag gaatattgta
      661 gtcatagata tcagaaaaca tcatcccaag cacttttgcg tttggggtga ctaatctgtc
      721 actatcataa ctgagtgatt cgctccctat tttgtaacgc aatgcaatac caaggcccca
      781 tgggtcagca tcagcaaaaa ttacaacagg ttttttccat tcttcgttga gtgtcctgac
      841 catcatcctt gtggctctat ccggctctcc agaacctgtc attaaaatcg cattatattt
      901 ttgtataaat ccagattttc ggatattatt cagaactgta tctttttcca cgaccattac
      961 aaagtttgcc tttacattaa cgatttcgac atcacgaata ttagtaggaa ttaattgtga
     1021 tgttgctctg cttccaagat tacaatcgat aatatcgcct cctacgcgaa gtgtaatagg
     1081 tccagatatc atgcctttag gtttagatgt aactgaaaat tcttccctgg gaacgcctgt
     1141 cagcaattct aatgctttga tggcatcatc tgaattttct tgtgaattcc aaaacttttg
     1201 tttattcttc tcgtctccta ctgtgctgag cgtagcataa tacatacccc tgattgtact
     1261 ctccatctcc tcatcaagta gccttctgat agcgttcgcc atgactagat actgtgcaaa
     1321 agtaggaatt ttttttgtac tatctgggct gacttgaatc attttatttc ctatagtaag
     1381 cattcgcttc tcgtcggacc aaattgtatt atcataacca acctttggaa catctaaaac
     1441 tggcattgtt ttttgaacca ttagatcgtc attaacatct ctcatgatta acttgatttt
     1501 cttgattacc tcttgatggc gtttgtctgc tgcagtcaat tatattctcc tcgccttggg
     1561 tttattgaaa gtatctaaag tgattcgatt ttttgattct gagttctttt taagatactt
     1621 tttagacttt ttcttatgac ttattgtttt gttttttatt ttctttttct tttcccttga
     1681 agcataaatc acatgtttcg tcgagtcttg ttttaagatt tcattttcat ttgtcttgtc
     1741 tgcctcttcc tcaatcctct ctcccgttat tttatctgct tttatgtctg ttggagtatc
     1801 cacactctct cccctgacat gtttttctgc aagctgggaa aatgcctctg aaagtttctc
     1861 tgaatccacc ttgattgatt cggagattgc actaataatc aaaggaatat aatgcttgta
     1921 aagtcttagt cggctttcag cctcttttat tcttaactct ttgcggatct gagcactcac
     1981 ctttcgatat aaatcagcta aacaggcttt catatatcgc tttaaatcac cttctgatgc
     2041 aatactttct ttgcctgctg ttttgtatgg aattttagtt gaacaaatat ggaaaaaaat
     2101 atgaattgga agtaattcta cggcacggtc ggactttgaa tctggattcg caaattgctc
     2161 ttttacttcc tttttcgaaa ttcccatttt gttaatttca acctctgaaa ctacttctct
     2221 tgcaacatca gaaccttcat catatagcag aggaattttg tttgcaaacc tatgcaattt
     2281 aaatgaactt atgtcacctc cgtaagcgat tccacattca actatggttg gtcgattgtt
     2341 aactacacac gttcttgatg aatatcctgt aagaacaggt cttagtacct ttgtcgataa
     2401 ctgctgctga ggctgatcac ctgaattagt gttttcttta tttgtaacga tggtatactc
     2461 tgaagtcatt ccagcaatta gaatttcttc gcctatagga ctaagatgct cagtattagg
     2521 cgcctgaaac ttagtctgtt tacatatatt aactacttta attaattcat gctcatcata
     2581 tttatcagca gtcttgagat ccacatctgc tttggttatg atctctttag ctttttcgct
     2641 ggaaagcttt tgaaaggaat tgcataatac accttgcaaa gttgtctttt gattcataaa
     2701 tcttatgatt gcctttttca gagttttcaa atccatatcg ccaggatgag gcaacacttc
     2761 ctttgctgga tggggcatta tctctgttct tctttcaaag acaactttac cttcatcagt
     2821 ctcaaatgtc aaaatagcat atggatttac aatactagtc tggctaatgt actcataaat
     2881 cttattcttt gtaatgggcg ataatcgagc acgtaataca gcttcgattc taaaaccata
     2941 ttcatcttga atccggctct cgcctgtttt aattatcctc tttaaaagaa caattggcct
     3001 atttgttcca atatctgtcc taagttcaaa gtaatattct gatccatcct cttgtgtttt
     3061 tgtccatacc tttagaggat gatctgtatc cttagtagaa aaggcagcga tcatttttag
     3121 acccacacca aacaggccgc gctgctgctt ttcgacatat ttaccagatg tcaaaaaaga
     3181 acagacggct accgggactt tatctgaggg aattccgata ccattatcct gacaactaac
     3241 aagccacatc tcattttccg gatctagtaa ttttaatgat aatgaaatat ttggtaaaat
     3301 atgattggtt tcacaagagt caagagaatt ttcaattaac tcgcggacag ccatatagag
     3361 aatacgctct ccagtaaagc cagcaagtgc agaattatcg acaaagaatt ctgattcagc
     3421 ttttttatca taacggactc ttccttttcc gttatttgga atagcaatta cggtggattc
     3481 tggcttcatt tgtgattgtg caagttcagc agtagtcttt ttcaaatatt gatgttagtt
     3541 tgataactca atttaacttt ttacaagatt caattttact ttttacgcca gatttgttga
     3601 ctagaaagat aataattaaa ttactatcaa aactgtgagc catatggggt agttgcattc
     3661 tttagctctt gtattttgat aatcttcatc tcgacaagaa atcttttctt atttttttgt
     3721 attactataa agtcagatcc ggatccgaca atatttccgt caactatatc tttaagcttg
     3781 accacatgtc aaatgtataa agaatcctta agagttttac tactctcaga agtattgtta
     3841 tatgatgaat aatagtccac aaggagtttt ctcccctcat acatactata aaaagatcag
     3901 aaaaagaaag tctttgtgca acaatagttt tcataagcat tttattcctt atctacacaa
     3961 gaaagaaaaa cagatgagaa aatgaatttg aaagatagta gcagtaaatt gcaagctcca
     4021 ttggaaatat tatgacaatt taacaagaga aaatatttat ccatcgagat gacgctcaga
     4081 caaaatctta tcttgactat catctttgaa cttggatagt tttactttct attctaatag
     4141 tatctagata aaattcataa agtatg
//
LOCUS       DATABJ010000227         1676 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1678009, whole genome shotgun sequence.
ACCESSION   DATABJ010000227 DATABJ010000000
VERSION     DATABJ010000227.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1676)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1676)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1676
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1678009"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            73..288
                     /locus_tag="VHF44_03735"
     CDS             73..288
                     /locus_tag="VHF44_03735"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124696.1"
                     /translation="MSSEYEQNVGKLLVEKKQRLDLLLENPNENKYEIQSLSNEIETL
                     KTMFENYNLGMNVFRRAQGGRSGLREQ"
     gene            425..>1676
                     /locus_tag="VHF44_03740"
     CDS             425..>1676
                     /locus_tag="VHF44_03740"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HEX2124697.1"
                     /translation="MHEEKLKKLYELKNLAESGGGKEKIDVQHSKGKLTARERIDLLL
                     DEGSFIELDKYVTHRQDDPETKKFYGDAVITGFGTITGRKIFVYAYDFTVLGGSLGEM
                     ASRKIVKIMDRAIKVGAPIIGILDSGGARIQEGVMSLDGYGDIFYRNTTASGIIPQIT
                     ASIGPCAGGAVYSPAMTDFIIMVENIGQMFVTGPEVVKEVLSEDVSFEDLGGASTHAT
                     KSGVAHMVAANEYECMEKIKKLISFLPQNNLEEPPSLLESTDDPNRLDPSLISMLPEN
                     PYQPYDIKSIIMSIIDNKDFYEIHETFASNIIVGFARMDGKTVGIVANQPMYLAGALD
                     IDSSNKAARFIRFCDSFNIPIITLVDTPGYLPGADQEHNGIIRHGSKLLYAYCEATVP
                     KITCIIGKAYGGAYIAMGSKNLKAD"
BASE COUNT          616 a          214 c          323 g          523 t
ORIGIN      
        1 atcaagaaat aatttatgaa aaaataaaaa aaatagtaaa attaaaatct taatttagat
       61 tatctagata aaatgtcaag tgaatatgaa cagaatgtag gaaaactact tgtggaaaaa
      121 aaacaaagat tagatttatt attagaaaat ccaaatgaaa ataagtatga aatacaatca
      181 ttgtctaatg aaattgagac attgaaaaca atgtttgaaa attataacct tggtatgaat
      241 gtcttcagaa gagcacaagg aggacgatcg ggtttacgag aacaatagat tgtttttctt
      301 tactaaactt ataataaatt cattatacct tttgcaagaa gattcttcac attattatat
      361 tgtttatctc atgattctta tgttatatat ataaatacca gaatatggga taaatgctaa
      421 agccatgcac gaagaaaagt taaagaaatt gtatgaattg aaaaatttag ctgaatccgg
      481 cggtggtaaa gaaaaaattg atgtacaaca ttctaaaggc aaacttacgg ctagagagag
      541 aattgatctc cttttggatg aaggaagttt tattgaattg gataaatatg tgactcatcg
      601 acaggatgat cctgaaacta agaaattcta tggggatgcc gtgattactg gatttggaac
      661 aattaccgga agaaaaatct ttgtgtacgc atatgatttt acagttttgg gtggatcctt
      721 gggtgaaatg gcatcaagaa aaattgtaaa aattatggat agggccatta aagttggcgc
      781 tccaataata ggaattcttg actctggtgg agctagaatt caggaaggag taatgagttt
      841 agatggctat ggtgatattt tttatagaaa tactactgct tctggaataa ttcctcaaat
      901 aactgctagc ataggacctt gtgctggtgg tgctgtatat tctccagcaa tgacagattt
      961 tattataatg gtagagaata taggacaaat gtttgtaact ggacctgaag ttgtgaagga
     1021 agttttaagt gaagatgtat cattcgaaga ccttggaggg gcttctactc atgcaactaa
     1081 atctggagtc gcccatatgg tagcagctaa tgaatatgaa tgtatggaaa aaattaaaaa
     1141 attgatttca tttcttcctc agaacaattt agaagaacca ccatcattat tagaatcaac
     1201 tgatgacccg aatagactcg atccgtcttt aataagtatg ttgcctgaaa atccatatca
     1261 gccatatgat attaaatcaa tcattatgag tataatcgac aataaagatt tttatgaaat
     1321 tcatgaaacc tttgcaagca atatcattgt agggtttgct agaatggatg gtaaaacagt
     1381 tggcattgta gctaaccaac ctatgtattt agcaggagct ttagacatag attcttctaa
     1441 taaagcagca agattcatta gattttgtga ttcttttaat attccgatta ttacattagt
     1501 tgatacccct ggttatttac caggtgctga tcaagagcat aatggaataa ttagacatgg
     1561 tagtaaatta ttatatgcat attgtgaagc aacagtacct aagattactt gtattattgg
     1621 aaaggcatat ggtggagctt atattgcaat gggaagtaaa aacctaaaag ccgata
//
LOCUS       DATABJ010000228         3208 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1921413, whole genome shotgun sequence.
ACCESSION   DATABJ010000228 DATABJ010000000
VERSION     DATABJ010000228.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3208
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1921413"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(219..995)
                     /locus_tag="VHF44_03745"
     CDS             complement(219..995)
                     /locus_tag="VHF44_03745"
                     /EC_number="3.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF013672.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA];
                     GO_process: GO:0005975 - carbohydrate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide deacetylase family protein"
                     /protein_id="HEX2124698.1"
                     /translation="MYPDILLFISSSSIPLRRGKVLITTSWDDGHPLDLKLCSLLKDY
                     GMSATMYIPIANPENEVITSDTIRAIAKDFEIGGHTYNHTRLTQVDENKMIYELTESK
                     NVLESIVRKEVVSFCYPWGLYNKKVTEKVKVSGYKLARTVKSLHTTLSRPLEYHPTIH
                     AFDYNLIAKSKFIVTASDRSLAAKLLLYGNIFKRWDMIAKKSLDDVLENGGIWHLWGH
                     SWEIDRYDNWALLRDVLEYAKVNGRKYGAESVENGMLVGY"
     gene            complement(2439..3122)
                     /locus_tag="VHF44_03750"
     CDS             complement(2439..3122)
                     /locus_tag="VHF44_03750"
                     /EC_number="2.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF024880.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008168 - methyltransferase activity
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEX2124699.1"
                     /translation="MEKDKHIWEDLADLDPLWAVFSSPEYRFRKWDTDQFFKTGDEEI
                     SEVMQACLQMGYPKGTECVLDFGCGVGRCTRALAKNFKQCYGVDVSENMIAKANELNG
                     SISNCTFTVNYEANLRIFSDDYFDLIYSTDVLQHIPSTLLIRNYISEFLRILKAGGIL
                     VLQLPHSIPLLYRAGVGSRIYNMLRTLGFNKQFIYQTLGKLGLTPYRMNFIPENEVVA
                     FLIGIGGGK"
BASE COUNT         1006 a          621 c          565 g         1016 t
ORIGIN      
        1 ttcgtccatt acaggcgcta ttgtaagaaa cattccgcta ttactaaggc tagaaagcag
       61 tgtgaaaaaa gtctgatttg tgtctcttta tttgttttat taatcttgat aattgttatt
      121 atggtattgt gtatattgac aacagggata ctctagataa tgtgtattgt aatcacttgg
      181 caaagctcca cattaccgct gctatagata taaagagatt agtaaccaac aagcatgcca
      241 ttttcaacag attctgcacc gtattttcta ccattgacct ttgcgtattc aagtacgtcg
      301 cgcagaagag cccaattatc gtagcgatca atctcccaag aatgccccca tagatgccaa
      361 attcccccat tttctagcac atcatcaagg gactttttag caatcatgtc ccagcgttta
      421 aaaatatttc catacagaag aagcttagca gctaagctac gatcactagc ggtaactatg
      481 aacttgctct ttgctattaa attataatca aaggcatgaa tcgtcgggtg atactcaagt
      541 ggtctggaca acgtagtatg caagctcttg acagttcttg ctagtttata gccagatact
      601 tttactttct cagttacctt cttattatat aagccccacg gatagcagaa agagacaact
      661 tcttttcgta caatactttc aagcacattt tttgattctg taagttcata aatcatctta
      721 ttttcgtcaa cttgagtcaa ccgtgtgtgg ttgtacgtat gaccgcctat ttcaaagtcc
      781 tttgcaatgg cccttattgt atcacttgta attacctcgt tttctggatt tgctatagga
      841 atatacatcg ttgcactcat accataatcc tttaacaacg aacacaattt cagatcaagc
      901 ggatggccat cgtcccaact ggtcgttata agcacttttc cgcgtctcaa tgggatgcta
      961 ctactagaga taaataaaag tatgtcggga tacaagaaaa aggaagtccc ttcacttgag
     1021 tgctaaaagc ttcggacaat gtgcacaaac atagatctat ttttatacat tgaaagctca
     1081 gctgccaaga cgtattatca agttttcgcg attatgatta atcctagatt gggttttaca
     1141 acatgaataa tgtgtttggt acactataca cagaagtagc aaatcagcta agtggtttgc
     1201 gtttcgatag ctactttgac gtttatcaca aaaatctgaa ttatatttta cttggtgttc
     1261 aacagaatag ggcgttcagg tacttagtcg ctagaagcat atacagatag tttctttgcc
     1321 cgtcattagt taattctttt ctatatataa tttgtttttg aaacgttatg aatctaaata
     1381 ttataacatt caaatgccga cattatgcac cagctataaa gaatataaaa taaagacaaa
     1441 accttaacat cataattcgc tagttataca tgctgcttcc agttggctac aatatcgtat
     1501 ttgaaccagg atgatcgttg gagaacacaa ctgtaaccca gccatccgaa gaggatgaga
     1561 acacattctg taatattgaa gaaggagtat cttctgaatg agctaatttt ttcagccaag
     1621 gcaaatttcg ttttcttctt caaggctgtt accgtggaca ctcagctaca agattaagat
     1681 attaaacacc ttttttggat aggcaatttg atggagacta gctctattca gattctgcta
     1741 tctagacact tatgcacact gtgacctgta ctacccaagg gagacgttgt tctcaaatag
     1801 aatttaataa agatgattat cgaataattc ttacctacat tatgtgacaa aaacccgata
     1861 gcaagttaga gtcttcgctt atgattgtcc tccgtgagga tcgttcatac caagctgtta
     1921 tacattaggt cgataacgct gatgagataa tgaaatcatg tgctgtaaag ataacaagag
     1981 atagaactgc ccctccccac agcttcgaaa ttccacatat ttgtcttaag taagaagcaa
     2041 aaagtaatgg atagcaaaaa ttacaactga tgcaaggaat gaagttgcca ttagataaac
     2101 gaagaatcaa gagcatttgc atcaacacta tagatgaccc attaatatta tggcccttta
     2161 gactccctat atatagatga agtcatacct gagttataga gaagccaata ctcatgcaat
     2221 agacaaggtg catataattc cgtacgtgtg cctgtttagt tatgttatga atgtttagaa
     2281 tagggtatta ttgtctaaca gtaaattacg tatataggga tgtatttgtt actatacttt
     2341 aggttcttgt tctactgatt tcgtaacata gtatcggcgt gaatagtaag ttcgggtttg
     2401 ggcagacggg cccgctgaag aatcattctt aacctttatc actttccccc cccaattcct
     2461 attaggaaag ccacaacttc attttcaggg ataaaattca ttcggtaagg tgtcaaacct
     2521 aactttccta acgtttgata gataaattgt ttgttaaatc caagtgttct taacatatta
     2581 tatatccttg agcctactcc tgctctatac aagagaggaa tactatgcgg taactgaagg
     2641 acaaggattc ctcctgcctt cagtatccga aggaattctg aaatgtaatt tctaattaaa
     2701 agcgtacttg ggatatgttg aagaacatcc gtagaataaa tcaggtcaaa gtaatcatca
     2761 gaaaagattc gtaaatttgc ttcataattt acagtaaatg tgcagttaga tatagaaccg
     2821 tttaattcgt tggcttttgc aatcatattt tcagagacat caactccgta gcattgttta
     2881 aaattttttg ccagtgctct tgtacatctt cccaccccgc agccaaaatc aagtacgcat
     2941 tctgttcctt ttggatagcc catttgcaag caggcttgca ttacttctga tatttcttca
     3001 tctcctgtct taaagaattg gtcagtatcc cactttcgaa atctatattc tggagaagaa
     3061 aaaacagccc acaaaggatc gagatctgcc aaatcctccc aaatatgctt atccttctcc
     3121 aaggagcggc ttaaagccaa tatagagttg attgtcgctt tctagataaa gatagtaaaa
     3181 gaaaactatc atacacgcat atgtgtat
//
LOCUS       DATABJ010000229         2791 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_399566, whole genome shotgun sequence.
ACCESSION   DATABJ010000229 DATABJ010000000
VERSION     DATABJ010000229.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2791)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2791)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2791
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_399566"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..397
                     /locus_tag="VHF44_03755"
     CDS             <1..397
                     /locus_tag="VHF44_03755"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124700.1"
                     /translation="IALIKETEPDIVNSSKYSARSGTEACKLKRVDSFIIKQRSECLH
                     KLIKEIGAKRNSIWKGWKGNVIIDEIGENILQGRNYAYKPVLLPSECLALSKPSKFKT
                     YLGDKLAVEISGYSSYSLTSSSVNLEIKS"
     gene            485..1459
                     /locus_tag="VHF44_03760"
     CDS             485..1459
                     /locus_tag="VHF44_03760"
                     /inference="COORDINATES: protein motif:HMM:NF012320.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124701.1"
                     /translation="MNNNYLPVRQPLVMVGIGGAGSKIAVDASKSLDCKCVLISNDKN
                     DLKQNYHSIFINSNSWINPSSYKIRSFAQSSTKGIKAAIDGFQTIIVITNLAGRSGTA
                     MSPIVSRLAKHSGATTIILFAIMPFGFEKDRIFHAGISLKRLRNIADATIVIDNDTLL
                     ENNPELSPQECYRITNKAICEVISTISEGHIRPSMNLLFAGKKNTTSVESSIKDSIEM
                     LYDNVDPNSIKRALLYVMGGENVPIGKLNFIVNTVQEIFTEEKTPEVVLSMSNSKRIT
                     IHLMATVQDKTRFDKYDPLSEIIPQQNVLDWEELDSSPDIEMAIPNLE"
     gene            complement(1753..2088)
                     /locus_tag="VHF44_03765"
     CDS             complement(1753..2088)
                     /locus_tag="VHF44_03765"
                     /inference="COORDINATES: protein motif:HMM:NF002258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L31e"
                     /protein_id="HEX2124702.1"
                     /translation="MSEIDENLTRVYTINLGRAWITPEHKRTDRVINLIKEFAKKHMK
                     TEEIKIDQDLNRQIWNRGKSNPPRKVRVKMVKDDNGIVIVSSYEEAIKTASTAGSESA
                     SLEDHERED"
     gene            complement(2112..2270)
                     /locus_tag="VHF44_03770"
     CDS             complement(2112..2270)
                     /locus_tag="VHF44_03770"
                     /inference="COORDINATES: protein motif:HMM:NF002316.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L39e"
                     /protein_id="HEX2124703.1"
                     /translation="MAARKKTARKKRLVKRTKQNRPVPAWIIIRTHRHVRTNPKRRLW
                     RRSDVKVG"
BASE COUNT          901 a          489 c          460 g          941 t
ORIGIN      
        1 aattgcatta ataaaagaga cagaacccga cattgtaaat tcctcaaaat atagcgctcg
       61 atctgggact gaagcttgca agcttaaacg cgtggattca tttataataa agcagagaag
      121 cgaatgcctt cataaactga taaaggaaat aggtgcaaag cgtaactcta tctggaaggg
      181 ttggaaagga aatgtaataa ttgatgaaat tggtgaaaat attctacagg gtagaaatta
      241 tgcatacaaa cctgttttac taccatcgga atgtcttgct ctatctaagc cttcgaagtt
      301 taagacttat cttggagaca agttagcagt cgagatttct ggatattcta gctattcatt
      361 aacttcaagc tctgttaatt tagagattaa atcttaaatc aactttttta cacaactgca
      421 ttttcatatt tgatattaac atttttaact tataataata catacattag aggattgggg
      481 ggctatgaat aataattatc taccagtaag acaaccatta gtaatggtcg gcataggagg
      541 tgcgggtagc aagattgcag tcgatgctag taagtcgctt gattgcaaat gtgtcttaat
      601 aagcaacgat aaaaacgatc ttaaacaaaa ttatcacagt attttcatta attccaattc
      661 atggataaat ccttcaagtt acaagatacg atcttttgcg caatcttcta ctaaaggaat
      721 taaagccgcc attgacggtt ttcaaacgat aatcgttatc acaaatctgg caggccggag
      781 cgggaccgca atgtctccaa tagtatctag attagctaaa cattcagggg ctaccacaat
      841 tatattattc gcgataatgc cttttggctt cgagaaagat agaatatttc atgcgggcat
      901 atccctaaag cgattacgaa atattgcaga tgcaacaata gtaatagata atgacacatt
      961 attagagaat aatcctgaac tatcacctca ggagtgttat agaatcacta ataaagcaat
     1021 ctgtgaagtt atctctacaa tctcagaagg acatattcgt cctagcatga acttattatt
     1081 tgcgggcaaa aaaaatacta cctccgtgga atcatctatt aaagactcga tcgaaatgtt
     1141 atatgacaac gtcgatccga attcgataaa gagagctttg ctgtatgtga tgggaggaga
     1201 aaatgtcccc ataggtaaac ttaattttat tgttaatact gtacaagaga ttttcacgga
     1261 agaaaaaact cctgaagtcg ttttgtccat gtctaattca aagagaatta cgatacatct
     1321 aatggctaca gttcaagaca aaacgagatt tgataaatat gatcctctct cagagattat
     1381 tccacaacaa aatgtcttgg attgggaaga gttagattct tctccagaca tagagatggc
     1441 tattccaaac cttgagtaaa aggaaaaagc atcttttatt tcccttttaa tttccaaagc
     1501 ctttatacag acctttatat gtaggcgaca taatattttg ttgacaatcg taattaggat
     1561 tatttttaaa tcgttcggat gataataata tcttgctttt tatttacaga gatgttaata
     1621 tagggagaac tatttgtatt ttagacactt cagtttcttt gatatatgat ataatgagtt
     1681 tccaattcaa aagtaaggta tcttgctatt cttttatcaa tcagctgaaa tattagcaga
     1741 attcgaaccg tttcaatctt ccctttcatg atcctcaaga gaagcagatt cagaaccagc
     1801 agtggatgca gtttttattg cttcttcata tgaagaaact ataactattc cgttgtcgtc
     1861 ttttaccatc ttaacacgca ctttccttgg aggattgctt ttgcctctat tccaaatctg
     1921 tcggttcaaa tcctgatcta ttttaatttc ttcagtcttc atgtgctttt tcgcaaactc
     1981 cttgattaag ttaataactc tatcagttct cttgtgctcg ggagttatcc aagctcttcc
     2041 taaattaatc gtatatacgc gagttagatt ctcatctatt tctgacattt gttatcataa
     2101 cacctcatat tttatccgac ttttacatcc gatcttcgcc ataatcttcg tttagggtta
     2161 gttctaacat gtcggtgcgt tctgattatt atccaggctg gcaccggtct attttgttta
     2221 gtgcgtttta ctaatcgttt cttacgggca gttttctttc gggcagccat atactcaatc
     2281 actattgaga cttattttta agtgttagtc taacccacaa cgatcagatt agctatatcg
     2341 ttacatctta atcatgacta taacgcatat caacattaat ttgtactgat aagcttcatt
     2401 tctatatccc ttcgtaaaaa atttacagat atagctctta gttaaaatca atattatcat
     2461 gacattaaat tgttgtaatt cagattttta tgcgcatgct agtatattct aataaataaa
     2521 ctcgatatta tggtttattt gttagatgca tcctatgtaa atgaatttag ttcagcatcg
     2581 tatctgacgt gttctacttt gcttttttgg caataaccat aaataattat tattgacgat
     2641 tataatgtct aggccgatga gttcatgtcg aaaatcgctc caatcaatta aggaaagata
     2701 gagaaaaaca gaaaaaatcg tctcttttca taaatactcc atattcatat agcatccttt
     2761 caccaaatcc tgaacaattt ttattataag a
//
LOCUS       DATABJ010000230         1712 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1922233, whole genome shotgun sequence.
ACCESSION   DATABJ010000230 DATABJ010000000
VERSION     DATABJ010000230.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1712)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1712)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1712
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1922233"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            615..728
                     /locus_tag="VHF44_03775"
     CDS             615..728
                     /locus_tag="VHF44_03775"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="C2H2-type zinc finger protein"
                     /protein_id="HEX2124704.1"
                     /translation="MKFDLFAKKNFKCDTCEKKFKTAAQLEEHRQLKHKKT"
     gene            1165..1440
                     /locus_tag="VHF44_03780"
     CDS             1165..1440
                     /locus_tag="VHF44_03780"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2124705.1"
                     /translation="MIQDTQVIVKVKYTGTAIHPDILPQLFSKFASKSFEGTRFGLFI
                     ANSIVEAHDGKIWAENNNINTHREKGVTFSSTLPTINRQQNVKVIDQ"
     gene            1440..>1712
                     /locus_tag="VHF44_03785"
     CDS             1440..>1712
                     /locus_tag="VHF44_03785"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2124706.1"
                     /translation="MNKRVLLVDDEPDLNLTLKMVLEENGFKVDSFTDPLSALENFKG
                     ESAGMYELLILDMKMPGINGFELYRQIKKIDDKVKVCFLTASEMYYG"
BASE COUNT          618 a          249 c          289 g          556 t
ORIGIN      
        1 gatactatta ctgctgaaga tgtaacatca tatctgtata ttgttaatta gaaagcactc
       61 aagacagtta aaagttagac tatttttaac taaaggaaga atatatttac aaaagatgta
      121 atattgtaaa ttctgtatgc agtactttgg gcaataccac atatatcggt attccatcag
      181 ggtataaatt atagtattgc tttatttaca cttattttac taatgggctt caacaacaac
      241 accttcttgc attcggacaa acatcacctg aaacatcagt aacagatgaa caaaccttta
      301 ggtcagcatt tgatactttg tttcttcaga acgggaggat atagtatctg tgaggacagg
      361 aaatctaatg cgttcaaccc aggagaaaca ttcttgctat atgttgaacc tcaggttata
      421 catatggtac agtaacagat gaagatggca atacactagt acaaagttga tagcaatctg
      481 cttcttaaca tggtctttta ctagttctct atgaataaag attacctcag gttgatgatt
      541 ttcattttaa ctgtccgcct ttaatcagaa tttcattgat atttatatat actgtagagt
      601 gcgcatagaa cttaatgaaa ttcgatttat ttgccaagaa gaactttaaa tgcgatacgt
      661 gtgaaaagaa gttcaagact gcagcacaat tagaagaaca tcgccaatta aaacataaga
      721 agacataatg tgtgtttgct tcttgcataa tattaaatat tctcgttcta ttctaattgt
      781 aaagatttct gctgcttatt ggaaaaaata taaaatgaat aaatatgaat agaaagacta
      841 agtcattaca ttgctgttta cagcatcata atatcgttaa ttttagcagg tattatctat
      901 agagccttca ctactttcac tgtattcact ttctataatc atgataatat caaaatacca
      961 ataacgcaat gtattatgat aaaacataaa cattgcatat tatagacagc aatgtcaaca
     1021 tatcataggt gggttttacc taactagtta agcaacttca gactttataa tcatgatgat
     1081 aaacaaagaa caaagttcaa ccttagaaat agcatattgt tccaatctga ggaagatata
     1141 tttataaaag tagattgaag taggttgatt caagatactc aagttattgt taaagtaaaa
     1201 tatacaggta ctgctataca ccctgacata ttgccacaac tattctcaaa gtttgcttca
     1261 aagtcttttg aaggtactag atttggattg tttattgcta atagtattgt ggaagctcat
     1321 gatggtaaga tatgggctga aaataataat atcaatactc atagagaaaa aggagttaca
     1381 ttttcctcta ctcttccaac catcaataga caacagaatg taaaggtgat agatcaataa
     1441 tgaacaagag ggtcttgtta gtagacgatg aacctgatct taatttaacg ttaaagatgg
     1501 ttttagaaga aaatggattc aaagtcgatt catttactga tcctttgtcg gcattggaga
     1561 attttaaagg agaatctgcc ggtatgtatg agctcttaat tcttgatatg aaaatgccag
     1621 gtatcaatgg ctttgagtta tatagacaaa taaagaagat agatgataaa gttaaagtat
     1681 gttttctgac agcaagtgaa atgtattatg ga
//
LOCUS       DATABJ010000231         4244 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1052122, whole genome shotgun sequence.
ACCESSION   DATABJ010000231 DATABJ010000000
VERSION     DATABJ010000231.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4244)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4244)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4244
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1052122"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1293
                     /locus_tag="VHF44_03790"
     CDS             <1..1293
                     /locus_tag="VHF44_03790"
                     /EC_number="2.4.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF025025.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEX2124707.1"
                     /translation="PLLFLLQTIGWCIFPILCNPWLTSPMEITLAIINGILTTITFGI
                     IITWVYLVAYVVKSLNQTPTLDSFKKSTNIKNFPKVSIILPARNEEKYIAKCLDSLLL
                     QDYPNFEIIAINDSSTDRTEVIMQYYAARDPRILVVDAKPKPDGWVGKNWACYQGYLR
                     ATGNLLLFTDADTVHVPCTLSLAIKHLISENLDALTAMPKLLCKDIWTKITLPMLSTF
                     LHSRFSALRVNDRKTKIGYFFGSFFIISRNIYENVGTHKAVRHEIIEDGALGGKVKEE
                     KFMMKMVRGDNYVEAIWARDFHSLWHGLRRLMIPLYNQKRKRASLMAIAIFFLLFEPF
                     LLLPYSLLFLNGARDDIFSLILIVSNVIASATIMLSSVIQLRFSVFQNPLYALASPLG
                     GAIISLSFITSIIDAKKKGTVSWRGRQYVLSEKQHPFN"
     gene            1441..2631
                     /gene="cofG"
                     /locus_tag="VHF44_03795"
     CDS             1441..2631
                     /gene="cofG"
                     /locus_tag="VHF44_03795"
                     /EC_number="4.3.1.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7,8-didemethyl-8-hydroxy-5-deazariboflavin
                     synthase CofG"
                     /protein_id="HEX2124708.1"
                     /translation="MLATTKDPNVYEILQKCLEGKKISKRDAYNLINSVDCIDLIVNT
                     GRKIRDRIKVGPITYSRKVFINLINLCRDTCSYCTYKKEPNDNSVTMMKPEQVLAIAE
                     AGRRLHCTEALFVTGEKPEQKYQEAKAWLNSVRRSSTVEYINEMSEMVLNKTGLLPHT
                     NAGSLTRKDMSLLKETNVSLGMMLESSSQRLGEKGMPHENAPSKNPKVRIKALENAGQ
                     LRIPLTTGLLIGIGESPEELVDSLFTIQEINQKYGHIQEIIMQNFAPKPETGMERSAP
                     PTYNYFIKSIAIARMIMPEINIQVPPNLNPNIFGKYLDAGINDWGGISPVTIDYVNPE
                     FPWPSIESVKDVTENRGCKFRARLPVYPEFIVKHNGFIKDRLKNYVNLISDEKGLVRE
                     DYIN"
     gene            2628..3899
                     /gene="cofH"
                     /locus_tag="VHF44_03800"
     CDS             2628..3899
                     /gene="cofH"
                     /locus_tag="VHF44_03800"
                     /EC_number="2.5.1.147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-amino-6-(D-ribitylamino)uracil--L-tyrosine
                     4-hydroxyphenyl transferase CofH"
                     /protein_id="HEX2124709.1"
                     /translation="MTLDSLLKGIDPLISSTLDRALSDKEISENEAVELFDSNGAEMN
                     VVVLVADELRRRTVGNNVTYVINRNINFTNVCIKRCGFCAFSRDFREEEGYFLPIEEV
                     VKRAKEASELGATEICIQAGLPPKMEGHLYIDICNAVKKELPNIHIHAFSPEEILYGA
                     IRSELPVEEYLKMLKEAGIGSLPGTAAEILDQELRDIISPGRISSKDWINIIKLAHSL
                     QIPTTSTIMYGHVESSLHKAKHLALIRSIQKETCGFTEFVPLSFVHSEAPMYNHNIIP
                     NIRPGADGNEVIKMHAISRIMLHGHINNIQVSWVKEGPRMSQLLLAAGVNDFGGTLIN
                     ESISTAAGAQYGQLMKPRQIRSIIKSAGRIPAQRSTTYKVLKVYDIEEDYQNYSDTRL
                     DKADPQEFGSYQELIKLDTFRYRDQNKNSNR"
     gene            complement(3900..4133)
                     /locus_tag="VHF44_03805"
     CDS             complement(3900..4133)
                     /locus_tag="VHF44_03805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020265886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HEX2124710.1"
                     /translation="MPRAFVLLNADLGYESTLAADMKGIPGVKEAYTVYGVYDLMIKV
                     EADSMDKLKEFISSKIRRVKGVKSTLTMLIMDN"
BASE COUNT         1467 a          725 c          775 g         1277 t
ORIGIN      
        1 cctcttcttt ttcttctaca gacgatcgga tggtgtatat ttccaatcct ttgtaaccca
       61 tggttgacct ctcctatgga aataactttg gcaataatca atgggatatt aactactatt
      121 acgtttggaa ttatcatcac atgggtatac ctagtagcat atgtagtaaa atctttgaat
      181 caaactccta cgctagattc ttttaaaaaa tccacgaata ttaaaaattt tcctaaagtc
      241 agcataattt tacccgcccg aaatgaagaa aaatatatag caaaatgttt ggatagttta
      301 ttattacaag actatccaaa ttttgagatt attgcaataa acgattcatc aacagataga
      361 actgaagtca taatgcagta ttatgcagca agagatccta ggatattagt tgttgatgct
      421 aaacctaagc ctgatgggtg ggtaggtaag aattgggcat gttatcaggg ttatctaaga
      481 gcgacaggca atttgcttct ctttacagat gctgataccg tacatgtacc ttgtacactg
      541 tcattggcta tcaagcattt gatatcggag aatctagatg ctctgactgc tatgccaaag
      601 cttctatgca aagacatttg gacaaaaatc acattaccga tgctttcaac ttttttacat
      661 agtcgatttt ccgctcttcg tgtaaatgac cgtaagacaa aaataggtta ctttttcggt
      721 agttttttca taatatctag gaacatctat gaaaacgtgg gtactcataa ggcagttaga
      781 catgagatca tagaagatgg cgccttagga ggaaaagtaa aagaagaaaa atttatgatg
      841 aaaatggtcc gtggtgacaa ctacgtagaa gcaatctggg ccagggattt tcattcgtta
      901 tggcatggtt taagacgatt aatgattcct ctgtataatc agaaaagaaa aagagcatct
      961 ttaatggcta ttgctatttt tttccttctt tttgaaccat ttcttttgct accctactca
     1021 ttattatttt taaatggagc cagggacgat atatttagtt taattttaat agtgagcaac
     1081 gttatagcat ctgcaactat tatgttaagt agcgttattc aattaaggtt tagcgttttt
     1141 caaaatcctc tttatgcatt agcttctccg ttaggaggag caattatatc attatctttt
     1201 ataacatcta ttatcgacgc aaaaaagaaa ggaaccgtca gttggcgcgg aaggcagtat
     1261 gttttaagcg aaaaacaaca tccatttaat taaaaaatga agactgcaag catattaata
     1321 agaagaataa tgacattttc gttcagccaa atttcatcta atattcaaac agctaacaat
     1381 taagaacctc aactattatt aagaatatca tgaattgatc tttaggaaaa tattataggt
     1441 atgctcgcta ccactaagga tccaaatgtc tatgaaattt tgcaaaaatg tttagaagga
     1501 aagaagatct ccaaaagaga cgcctataat ctcattaatt ctgtggattg cattgattta
     1561 attgtaaata ctggaagaaa aatcagagat agaattaagg ttggtccaat cacatactcc
     1621 cgtaaagttt tcataaattt aattaaccta tgtagagata cgtgttctta ttgtacttat
     1681 aaaaaagaac cgaatgacaa ttccgtaact atgatgaaac cggaacaagt tctagctatt
     1741 gcagaagcag gtcgacggct ccattgtact gaagctttat ttgtaacagg tgaaaagcct
     1801 gagcagaaat accaagaggc aaaagcatgg ctaaattcag taaggagatc atcaactgtt
     1861 gaatatataa atgaaatgag tgaaatggta cttaacaaaa cgggcttact tccacatacc
     1921 aatgctggta gtttaacaag aaaggatatg tcattattaa aagagaccaa tgttagctta
     1981 ggcatgatgc tagaatcttc tagccaacga ttaggtgaaa aaggtatgcc gcatgaaaat
     2041 gctccaagta aaaatccgaa agttagaata aaagcattag agaatgcagg acaattgaga
     2101 atacccctta ccacaggctt actaattgga ataggtgaaa gcccggaaga acttgttgat
     2161 tccttattta caattcaaga gattaaccaa aaatatggac atatccaaga gataataatg
     2221 cagaactttg caccaaagcc tgaaactgga atggaaaggt ctgcacctcc tacatacaac
     2281 tattttataa agagcatagc tattgctaga atgataatgc cagaaattaa tattcaagtt
     2341 cctcctaacc tcaatcctaa tattttcgga aaatatttgg atgcaggaat caatgattgg
     2401 ggtgggattt cccctgtgac cattgactat gtaaatccag aatttccttg gccaagcatt
     2461 gaatctgtaa aagacgttac tgaaaataga ggctgcaaat ttagagcacg gctccctgtc
     2521 tatccagaat ttatagtaaa acacaatgga tttataaaag ataggcttaa gaattacgta
     2581 aaccttattt ctgatgagaa agggcttgta cgtgaggact atataaattg actttagatt
     2641 ctctattaaa gggaattgat cctttgattt cctccactct agatcgagca cttagcgaca
     2701 aagagatttc agaaaatgaa gcagttgaac ttttcgattc taatggtgcc gaaatgaatg
     2761 ttgttgtact tgttgccgat gaattgcgca gacggactgt tggaaataat gtcacgtatg
     2821 ttataaatag aaatattaat ttcacaaatg tatgcatcaa acgctgcggt ttttgtgcat
     2881 tcagcagaga ctttcgcgaa gaagaaggtt attttcttcc tattgaagag gttgttaaaa
     2941 gagccaaaga agcttcagag cttggtgcta cagaaatttg cattcaagct ggattacctc
     3001 ctaaaatgga aggtcatttg tatatagaca tttgtaatgc tgtgaagaaa gaattaccaa
     3061 atattcacat ccatgcgttt tctccagaag agatactcta tggggcaatt agatcggaat
     3121 taccagttga agaatacttg aaaatgttaa aggaagcagg gataggcagt cttccaggaa
     3181 ctgcagctga gatcctagat caagaattgc gtgacattat atctcccgga agaatatcat
     3241 ctaaagactg gataaatatc ataaaactcg cacattcttt gcaaattcct accacctcca
     3301 ctatcatgta tgggcatgtt gagtcatcat tacataaagc caaacatctt gctttgataa
     3361 gaagtattca aaaagaaaca tgtggattta ctgaatttgt gcctttgagt tttgtccaca
     3421 gcgaagcgcc tatgtacaat cataatataa taccaaatat tcgacctgga gccgatggca
     3481 atgaagtcat taaaatgcat gccatatcac gcattatgtt acacggtcac atcaataata
     3541 ttcaagtctc atgggttaaa gaaggtccaa gaatgtcgca attgttactt gctgcaggtg
     3601 tcaatgattt cggtggtact ttgatcaatg agagtatttc aacggctgca ggagcacaat
     3661 atgggcaatt aatgaagcca agacaaatta gatctataat aaaatcagca ggaagaatac
     3721 cagctcagcg ctctactaca tataaagtat taaaagtcta tgacatagaa gaagattacc
     3781 agaattattc tgatacccga ttagataaag cagatccgca ggaatttgga tcatatcagg
     3841 aattgataaa actggataca tttagataca gagatcaaaa taaaaatagt aacagatagc
     3901 taattatcca taataagcat cgttaatgta gattttacgc cttttactct ccttatttta
     3961 ctactaatga attctttcaa cttgtccatt gaatcggctt cgactttaat catcaagtca
     4021 tacacaccgt acactgtata cgcttcctta acaccaggaa tgcctttcat atctgcagct
     4081 aaagttgatt cataaccaag atcggcgttc aacaatacaa atgctctcgg catattgttc
     4141 tacacatcat ttagcaggga ttatacttta agttaactat tatttaattc acaagtatca
     4201 acaggtgtct tctatatata atgagtttca gacatgctat aaca
//
LOCUS       DATABJ010000232         2574 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_610603, whole genome shotgun sequence.
ACCESSION   DATABJ010000232 DATABJ010000000
VERSION     DATABJ010000232.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2574)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2574)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2574
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_610603"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            277..1098
                     /gene="rrp4"
                     /locus_tag="VHF44_03810"
     CDS             277..1098
                     /gene="rrp4"
                     /locus_tag="VHF44_03810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000178 - exosome (RNase complex)
                     [Evidence IEA];
                     GO_function: GO:0003723 - RNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex RNA-binding protein Rrp4"
                     /protein_id="HEX2124711.1"
                     /translation="MLEIKKRYVIPGDVIIEGNYRPLMNVIKKDNFIIATRIGIAESS
                     KDGIKVIPLSGVYIPRVNDIVIGKIIDNSSLSWEVDINAIFSAHLPAQDVFGRDFSPA
                     KDDMKKRLAPGDLVTARIITFDRTRDPMLTIQEKDLGKISNGEFLKISSTRVPRLIGK
                     RVSMIQTIEQATQTRILIGQNGILVVTGKNNEGIALAFKAIRLVEEEAHTSNLTQRVK
                     DLLNVSEDVSQTETNNSSVNNEDYVNNSYADNNSNDIKNGHSSNNNIESPRRDSA"
     gene            1119..1880
                     /gene="rrp41"
                     /locus_tag="VHF44_03815"
     CDS             1119..1880
                     /gene="rrp41"
                     /locus_tag="VHF44_03815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex exonuclease Rrp41"
                     /protein_id="HEX2124712.1"
                     /translation="MDQTILIDENGKRTDGRSIDELRDVKITIGVIKNADGSAFIEFG
                     KNKIIVAVYGPREVHPKHMALPDRCVLRCRYHMSPFSTDTRKNPAPSRREVEISKVMR
                     EALEPAIMLEDYPRAAIDVFVEVLQADGGSRCAGIAAASVALADAGVNMRDLVAACAA
                     GKVNDKIVLDINDIEDKEGSADMPVAYLPNLEQITLLQLDGILNESQFDECLEKAVNG
                     CKKVYEIQRKALIEKYFGNDLPEGEEKELEENKEN"
     gene            1877..>2574
                     /gene="rrp42"
                     /locus_tag="VHF44_03820"
     CDS             1877..>2574
                     /gene="rrp42"
                     /locus_tag="VHF44_03820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0000178 - exosome (RNase complex)
                     [Evidence IEA];
                     GO_process: GO:0006401 - RNA catabolic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="exosome complex protein Rrp42"
                     /protein_id="HEX2124713.1"
                     /translation="MSLSKKSPIVIEQLRKRHMFDLITNGKRLDGRNLEDTRDLQIEV
                     DIIKKADGSAKVKLGNSEVIAGIKVETGEPFEGLENKGALIVTAEILPIASPYIEPGP
                     PDEETIELARVVDRGIRESKMVDLDKLVLIPGKIVYTIFVDCSIINADGNLFDATSYA
                     VVAALLSSKLPIFEIHDGKVVDTGKKQEPPITTIPISITSIRIGNNIILDPTAEEEVC
                     MESRITITTNSNGE"
BASE COUNT         1003 a          319 c          495 g          757 t
ORIGIN      
        1 ggcataggag atctcaaaga tgagaaatgg cttcaggatg gatcattaaa agtaattata
       61 gaaataaatg ctgggatacg catgactttc attgaaagaa taaattctat tacaaaaggc
      121 tctgcccata ttcaagagca ataataacaa tgaataaata ccatttatta aaataggaaa
      181 ttggaacttg aaaagagata taaaattttt atataatgat acaaacaaaa tacttttctt
      241 tgttaatgtt actaataagg agatgttatt atattagtgt tagaaattaa gaaaagatat
      301 gttattccag gcgatgtgat tatagaaggc aattatcgac cattaatgaa tgtaataaaa
      361 aaagataatt ttataattgc tacaaggata ggaattgccg aatcaagtaa agatggtata
      421 aaagttattc cattatcagg tgtttatatt ccaagagtaa atgatatagt cattggaaaa
      481 attatagata attcttcatt atcatgggaa gtagatatta atgcaatttt ttcagctcat
      541 cttcctgctc aagatgtgtt tggaagagat ttttctcctg caaaagatga tatgaaaaaa
      601 agacttgcac caggtgattt ggtaacagct agaataataa cttttgacag aactagagat
      661 cctatgttaa cgattcagga aaaggattta ggtaagattt ctaatggtga atttttaaag
      721 atatcttcaa cacgtgttcc ccgtttaata ggaaagaggg tttctatgat acaaactatc
      781 gaacaagcta cacaaactag aattttaatt ggacaaaatg gtatacttgt tgtaactgga
      841 aaaaacaatg aaggcattgc tcttgctttt aaagcaataa gattagttga ggaagaagca
      901 catacctcaa atttaacaca aagagtgaaa gatttgctaa atgtttctga ggacgtatca
      961 caaacagaaa ctaataatag ttcagtgaat aacgaagact atgttaacaa cagttatgca
     1021 gataataatt ccaatgatat taaaaatggt catagttcaa ataataatat tgaatctcca
     1081 agaagagatt cagcttaata aggagtagga taaaaattat ggatcaaaca attctaatag
     1141 atgaaaatgg aaaacgtact gatggtcgat ctattgatga attaagagat gttaaaatta
     1201 ctataggtgt tataaagaat gcagatggat ctgcatttat agaatttggt aaaaacaaaa
     1261 ttatagtagc agtatatggg ccaagagaag ttcatcctaa acatatggct ctccctgata
     1321 gatgtgtctt aagatgtaga tatcatatgt cacccttttc aacagatact agaaaaaacc
     1381 cagctccttc aagaagagaa gttgaaattt caaaggtaat gcgtgaagca ttagaacccg
     1441 caataatgtt agaggattat cctagagctg ctattgatgt ttttgtagaa gtattacagg
     1501 cagatggtgg atctcgatgt gcaggaattg ccgcagcctc tgtggcttta gctgatgctg
     1561 gagttaatat gcgagatttg gtcgcagcct gtgcagctgg aaaagtaaat gataaaatag
     1621 ttcttgatat caatgacatt gaagataaag aaggatcagc tgatatgccc gttgcatact
     1681 taccaaatct tgaacagata accttattac aattagatgg aatattaaat gaatctcagt
     1741 ttgatgaatg tttagaaaaa gccgttaatg gatgtaaaaa ggtttatgaa atacaaagaa
     1801 aagcattaat agaaaaatac tttggaaatg atttgcctga gggtgaagag aaagaattgg
     1861 aggagaataa agagaattga gtttatcaaa aaaatcgcca atagtaattg aacaattacg
     1921 taaacgacac atgttcgatt taattactaa tggaaaaagg ttagatggta gaaacttaga
     1981 agatacaaga gatctacaaa tagaagtaga tataattaaa aaagcagatg ggtctgctaa
     2041 agtaaaatta ggcaattcag aagtaattgc aggaataaaa gttgaaacag gcgaaccatt
     2101 tgaaggatta gaaaataaag gtgcgttgat tgtaactgca gaaattctgc ctattgcatc
     2161 tccctacata gaacctggac ctccagatga agaaacgata gaactagcta gagtagttga
     2221 tcgaggaatt agagaatcta agatggttga tttagataaa ttagttttga tacctggtaa
     2281 aatagtttat actatcttcg ttgattgtag tataattaat gctgacggta atctttttga
     2341 tgcaacttca tatgctgtag ttgctgcatt attaagtagt aaattaccaa tttttgaaat
     2401 tcatgatgga aaggtagttg atacaggaaa aaaacaagaa cctccaatta caacaatacc
     2461 tatatcaata acctctataa gaatagggaa taatattatt ctagatccta ctgctgaaga
     2521 agaagtatgt atggaatcaa ggataacaat aactactaat tctaatggtg aata
//
LOCUS       DATABJ010000233         1829 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_833350, whole genome shotgun sequence.
ACCESSION   DATABJ010000233 DATABJ010000000
VERSION     DATABJ010000233.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1829)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1829)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1829
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_833350"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            223..1569
                     /gene="lpdA"
                     /locus_tag="VHF44_03825"
     CDS             223..1569
                     /gene="lpdA"
                     /locus_tag="VHF44_03825"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: protein motif:HMM:TIGR01350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004148 - dihydrolipoyl dehydrogenase
                     activity [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA];
                     GO_process: GO:0045454 - cell redox homeostasis [Evidence
                     IEA];
                     GO_process: GO:0051068 - dihydrolipoamide metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEX2124714.1"
                     /translation="MYDIVVIGGGPGGYACAIRAAQLGGNVCLIEKNGLGGTCTQRGC
                     IPTKYLHSLGDIMRRATGAKKNGLNIQIELNYKLLKSRMEATVSRLASGIKLLLKSNN
                     VNLIEGQAHIVSENKVAVNDIMIETKNIVIATGSYPICLPGYQFGEKILSTTSILELE
                     NLPNSVTIIGGGYSGCEFASILNALGCKVSLIEAENHLLPFQIKEIGNAIEKYMRLDG
                     VNVMTQSRVEKISDNIAFVNGEKIVAEKILICVGRRPNITPNELNNIGIKFNQQGIYV
                     DEKMQTNIHNVYAIGDVTGMYELAHVASRQGEVAAENIMRIKENNKIDYQSLPVCVFT
                     YPEVAYVGDLTGRTGEFPLAASAKANCLGDTRGLFKVFEKERKLVGTYIIAPHAGELI
                     GEAALAIKMKLSLKDILHTIHAHPTLPESFAEAIGDINNQAIHLPAKKKDKIRKFV"
BASE COUNT          671 a          257 c          373 g          528 t
ORIGIN      
        1 gaccttcgaa caggtagcgt acaatctaaa agaatcattt agtgaaaaat ttggtgctga
       61 gattattgtt gacgatctaa ctatcaaaga agaggaaagt actaaaaagt tggtaaagga
      121 aaaatatact tcagatcaat ggaatcggaa aaagtaaact gacttgttaa aaggcttatt
      181 tgtcaaacat tcgaaagtta cgtagacggc ggagagaaat atatgtatga tatagtagtc
      241 ataggaggag gtcctggtgg ttatgcttgt gccattagag cagcacagct tggtgggaat
      301 gtctgcctaa ttgaaaagaa tggactaggg ggaacttgta ctcagagagg atgtattcct
      361 acaaagtatc ttcattcgtt aggggacata atgagaagag caactggtgc aaagaaaaat
      421 gggttaaata tccaaattga attgaattat aaacttctaa agtctaggat ggaggctaca
      481 gtttctagac ttgcatccgg gataaaactt cttctcaaaa gtaataatgt taatctaata
      541 gaaggtcaag cacatatagt ttcagaaaat aaagtagcag tcaatgacat tatgatagaa
      601 acaaaaaata ttgttattgc aactggaagt tatcctattt gtttgccagg ttatcaattt
      661 ggagagaaga tactatcaac tacctcaatt ctagaattag aaaacctgcc gaattccgtc
      721 actattatag gaggtggata tagtggatgt gaatttgctt ctatcttgaa tgctctagga
      781 tgtaaggtat ctttaatcga ggctgaaaat catctattac cttttcaaat aaaagaaatt
      841 ggaaatgcaa ttgagaaata tatgaggcta gatggagtca atgtaatgac acaatcaaga
      901 gtagaaaaaa tcagtgacaa tatagcattt gttaatggag aaaaaattgt agcagaaaag
      961 atactcattt gtgtcggaag aagaccaaat ataactccta atgaactaaa taatattgga
     1021 ataaaattca accaacaggg catttatgta gatgaaaaaa tgcaaaccaa cattcacaat
     1081 gtgtatgcaa ttggtgatgt aacaggcatg tatgagcttg cccatgtcgc ctcgcggcaa
     1141 ggtgaggttg ctgctgaaaa tataatgcga ataaaagaga acaataaaat tgattatcaa
     1201 tctttacctg tgtgtgtatt cacttatcca gaagttgctt acgtagggga tttaacagga
     1261 aggactggag aatttccact tgcagcaagt gcaaaggcaa attgtttggg agatacaaga
     1321 ggccttttta aagtctttga gaaggaaaga aaacttgtgg gaacttatat tattgcaccc
     1381 catgcaggtg agttgatagg tgaagccgcc ctagcaatca aaatgaaact aagtcttaaa
     1441 gatatactcc acactataca tgctcatcct acgcttccag agtcatttgc agaagctata
     1501 ggagacatta ataatcaagc catccatctt ccagcaaaga agaaggacaa aattcgtaaa
     1561 ttcgtttaac cttcctagta tggtacaatt agagaaaaat gtgctgttgt tggtatctat
     1621 aaaccataaa aaaattcgtg atactggctt atagaagctt gtatattatg caagaatatg
     1681 attgaattag taaggtgtag agaattttct tgtgttacta aatttgcgaa tatagtttta
     1741 tctgaaaatt acattattat cactattgat attttcatta aaaaataaaa gggataaaat
     1801 attaaaaata acttcctatt ttatcgtgg
//
LOCUS       DATABJ010000234         3762 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1274043, whole genome shotgun sequence.
ACCESSION   DATABJ010000234 DATABJ010000000
VERSION     DATABJ010000234.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3762)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3762)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3762
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1274043"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..197
                     /locus_tag="VHF44_03830"
     CDS             <1..197
                     /locus_tag="VHF44_03830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124715.1"
                     /translation="MSIIERTMEYVKDRTECFDDYYPCRKKLDCDLNHVYQWFALFIF
                     LHNLKSYSSSINNPIGGEKA"
     gene            complement(268..1509)
                     /locus_tag="VHF44_03835"
     CDS             complement(268..1509)
                     /locus_tag="VHF44_03835"
                     /inference="COORDINATES: protein motif:HMM:NF012377.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004553 - hydrolase activity, hydrolyzing
                     O-glycosyl compounds [Evidence IEA];
                     GO_process: GO:0071704 - organic substance metabolic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cellulase family glycosylhydrolase"
                     /protein_id="HEX2124716.1"
                     /translation="MNKNINLLFFLLTIISLSIATINTASIDVVSAQQTDGDVTYLGV
                     DMSGFHTRNPQARNPSYDLPANYFEDSFRILSEAGMNHVRFVLFWESYVKDPTSFMNE
                     LNAAANAADKWGIKVLYDNHQFHTSSWLNPQRGTGFPSFLFENNSTYPLGGGGGTQFP
                     AAQSWWTDWWNRSIKDANGNDGWTLLSEFLKKIVTTVDAHPSTIGYEILSEPQVHNVD
                     QWEKVGAFNTLITNELRTLTQKTIAYSMNIPVDLTGPIGVNPENLAKMAPDNKTNVIF
                     KVSLYGLPTPDTYQGDRLNTFIQAGQLAEVPLYFGEWNNVVRERSINEEGEVVTQISP
                     ELSNINQTEANLIVKTFKDNDAWGMAYWQWNIDVHPIATYNLIRGADATGVPQTTNYF
                     DILKNAYSSVYPEITSRNATS"
     gene            1813..3696
                     /locus_tag="VHF44_03840"
     CDS             1813..3696
                     /locus_tag="VHF44_03840"
                     /inference="COORDINATES: protein motif:HMM:NF024627.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="right-handed parallel beta-helix
                     repeat-containing protein"
                     /protein_id="HEX2124717.1"
                     /translation="MLSITGEASEIFHYKLHDTYSVSFLPVNQSRTGEQEIIPKSNSF
                     CVNYDNRTMTINICGGKMNMTELDSIINNSKILNQTSPKNWFLNANILIAKGATLFVN
                     STDTDWLKINSTAGRAYSIATKGNLLIDNTKISSWNFTNNSDTLLNSISQPRGYLVVP
                     WDSTGHMNITNSNLSYLGYGGVKDTWGISYYAGDGSIISNNSFSFNYRGFHASDDASN
                     IMLVNNTINNSYQHGIVAHINSTNLQVYNNAIHNNANHGIFCSELCKNILMKNNSVYN
                     NTGNGIFLNRLTVGSEIENNTIYHNRGSGITLSNSSSNVIANNTIDGNSYGVIITRSS
                     YNNSIHHNMIKDSHLNGIYLYENSTNNTFKNNTVRESIGNGIYVQGKGTSNNTFIKNT
                     VTKGSSYGIQFFNASNNILLDNTIYNNSNYNYYGKSASINTIIDTLFNNASLRFFDDN
                     SRFILQYTNNNIIGVSNKRIINTVYPTNTTLLIMPFSKSITLDMYDMSVIPSSNHVNI
                     TAFTNDFKSNENYKKWSEISPPALPITTKYTIGGFEPNTQISINVNGSFWNAYTSNSS
                     GYITFLYDGYYTLKQFEAEANNKPALAAILFLTIIVIGLGILFVIFKRHKRINDTAKH
                     NIS"
BASE COUNT         1272 a          658 c          599 g         1233 t
ORIGIN      
        1 agatgagcat catcgaaaga actatggagt atgtaaagga taggacagaa tgttttgacg
       61 attattatcc ttgcagaaag aaattagatt gcgatctaaa ccacgtatac caatggtttg
      121 ctttattcat attcctccat aatttgaagt cttattctag ttcaatcaat aatccaatag
      181 gaggtgagaa ggcctaactt aacagcgcca gccaaaaata cataaaatat atatataaaa
      241 tgttaaggct ctagcaaacg ccttaggcta acttgtagca tttctcgatg taatttcagg
      301 ataaacactc gaatatgcat ttttgagaat atcaaagtaa tttgtcgttt gtggaactcc
      361 tgtcgcatca gcacccctaa taaggttgta agttgctatc ggatgaacat caatattcca
      421 ttgccagtac gccattcccc atgcatcatt atccttgaat gtcttaacaa tgaggttagc
      481 ctcagtctga tttatattac ttagctcagg gcttatctgg gttacaactt caccctcttc
      541 attaatgctt ctttcacgta ccacgttatt ccattcacca aaatacaacg gaacttcggc
      601 aagttgtcct gcctgaatga aagtattcag tctgtccccc tgataagtgt ctggagtagg
      661 taaaccatac aagctaactt tgaatattac atttgtttta ttatctggtg ccatttttgc
      721 caaattctca ggatttacac ctatcggccc ggttagatcc accggtatat tcatactgta
      781 tgctattgtc ttttgagtta atgttctcaa ttcatttgta attaatgtat tgaaagcccc
      841 taccttttcc cattgatcta cattatgtac ttgaggttca cttagtattt catatcctat
      901 tgtacttgga tgagcatcta cagtcgttac tatttttttc aaaaattcag acaataatgt
      961 ccaaccatcg tttccattag catcctttat tgatctattc caccagtctg tccaccatga
     1021 ttgtgcagct ggaaattgag ttccacctcc accgcctaaa ggatatgtag aattattttc
     1081 aaagagaaag gatggaaaac cagttcctct ctggggattc agccaagatg atgtgtgaaa
     1141 ttgatgatta tcgtagagca cttttattcc ccatttatca gccgcatttg cagcagcgtt
     1201 taactcattc ataaaagaag taggatcttt tacatatgat tcccaaaaca acacaaaccg
     1261 aacatgattc atacctgctt ctgataatat cctaaaggaa tcttcaaaat agtttgctgg
     1321 taaatcataa gaaggatttc ttgcttgagg attacgagta tgaaaaccac tcatatcaac
     1381 tccgagataa gttacgtcgc cgtcagtctg ctgggctgat acgacgtcta ttgatgcagt
     1441 attgatagtg gctatactaa gactgataat tgttaataga aaaaaaagca agttaatgtt
     1501 tttgttcaat ttgtgattca atcaacggtt cttttactct atctttttat atgtctatct
     1561 gttcttaaat cgttggcaaa aacaccatct tttaatgata gattaaaaat aatgaatctt
     1621 tacagataaa tctagataaa gaaacgtact ttttaatatt atgaaaggtg tagctgtgac
     1681 atacggttaa atgcttagat cctgtcatat gtattgtttg tttatataaa tgaaaatcta
     1741 atgagacaac tattgccaac atttttgttt ttgatattgt tcttaatgtt gattgcgact
     1801 gcactctcat taatgctatc gattacaggc gaagcatcag agatattcca ttacaaattg
     1861 catgatacat acagtgtcag ttttttgcca gttaatcaat caagaacagg tgaacaggag
     1921 atcataccaa agagcaattc tttttgtgtg aattatgaca acaggactat gacaataaac
     1981 atttgtggag gaaagatgaa catgacagaa cttgatagca tcataaataa ttcaaaaatc
     2041 ttgaatcaaa catctcctaa aaattggttt cttaacgcta acattttaat agcaaaaggc
     2101 gcaacccttt ttgttaattc tactgataca gactggctga aaatcaattc aaccgcagga
     2161 agagcatatt caatagcaac aaaaggaaat ttgctcatag ataatacaaa aatatcttca
     2221 tggaatttta caaataactc agatactctg ttgaattcta tatctcagcc aaggggttat
     2281 ctggtagtac cttgggatag tacgggacat atgaacataa ctaattccaa tttaagttat
     2341 ttaggatatg gtggcgtgaa agatacatgg ggcatctcct actatgctgg cgatggtagt
     2401 attatttcta ataattcttt ttcttttaat tatagagggt ttcatgcatc agatgatgca
     2461 tcaaatatta tgttagtaaa taatacaatc aataatagtt atcaacacgg aattgttgct
     2521 catatcaact ctactaatct tcaagtctac aataatgcaa ttcacaataa cgcaaaccat
     2581 ggtatttttt gctcagaatt atgtaaaaat attttaatga aaaataactc tgtttataat
     2641 aacaccggta atggaatctt cttgaaccga ttgacggtag gctcggagat tgagaataac
     2701 acaatctatc acaatagagg ttcgggtata acactatcca attcatctag taatgtaatt
     2761 gctaataaca caatagatgg aaattcgtat ggtgtaataa ttactcgaag ctcttacaat
     2821 aattcgattc atcataatat gatcaaagat agtcatttaa atggtatcta cctttatgaa
     2881 aattccacta ataatacgtt taaaaataat actgtaagag aatccattgg caatggcata
     2941 tatgttcaag gcaaaggcac aagtaataat acttttatta aaaatactgt aactaaagga
     3001 tcaagctatg gcattcaatt ttttaatgct tctaataata ttctcctaga taatacaatt
     3061 tacaataact ccaactataa ttattacgga aagtcagcaa gtattaacac gataatagac
     3121 actttattta ataatgcttc attgaggttt ttcgatgata atagcaggtt tatattgcaa
     3181 tatactaaca acaatattat tggagtttct aataaaagga taatcaatac cgtttatcct
     3241 acaaatacaa ctcttctgat aatgccattt agtaaaagta taactttaga tatgtatgat
     3301 atgagtgtaa ttccttcctc taaccatgta aatataactg cttttactaa tgatttcaaa
     3361 tccaatgaaa attataaaaa atggtcagag atttcaccgc ctgctttacc tatcacaaca
     3421 aagtatacca tcggtggatt tgaaccgaac acacaaattt ctatcaacgt aaatggttcg
     3481 ttttggaatg cctatacttc taattcatca ggttatatca cgttccttta tgatggatac
     3541 tatactctaa agcaatttga agctgaagcc aataataaac cagccttagc agcaatatta
     3601 tttcttacaa ttatagtcat agggctagga atcttatttg ttatttttaa aagacacaag
     3661 cgcataaatg acaccgcaaa acataacatc agttagcaaa agttaaaaat tgagcagcta
     3721 aaggatagca gctcttattt tcgctggaca ggcggttttg ag
//
LOCUS       DATABJ010000235         1864 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1060350, whole genome shotgun sequence.
ACCESSION   DATABJ010000235 DATABJ010000000
VERSION     DATABJ010000235.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1864)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1864)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1864
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1060350"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..228)
                     /locus_tag="VHF44_03845"
     CDS             complement(<1..228)
                     /locus_tag="VHF44_03845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124718.1"
                     /translation="MEFEDFKEFLNTANHTKKNNKSGIDNISYFIDWCNNNNYEELLL
                     RLNSERQGGLGYNSIIDFTNKRVIITRKKIIN"
     gene            complement(260..1357)
                     /locus_tag="VHF44_03850"
     CDS             complement(260..1357)
                     /locus_tag="VHF44_03850"
                     /inference="COORDINATES: protein motif:HMM:NF015226.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="urea transporter"
                     /protein_id="HEX2124719.1"
                     /translation="MSNNPLMDFFYILFNGISEVPLFSSPITGILILAGVFLASRNAG
                     IMMVISGLIGAGMAILLGAPYGLFAFGLFGYNSILTGMAFWSGPFVKSNKATFFISVF
                     GAAVTAVVWMAMAHLMGDMFILNGLQESWAIPGFTSSFIFTTWALMYATKRFGHDIWP
                     EPSPTKSEELIKASGNPAPIVEPNFKWTAGEFMKATLKGVSQVTFVENWKTGVFWVVG
                     LTLAFELAPFLTGQDRPWWTNAFTAQWNEFSPLYLGGVMALVGSAIGVAMAILTKLPT
                     AETRAGLHGFNQVLVMIALTSFLPLTPQAFMIAVFAAVSCSFVMPALQRFFGMWGLPA
                     LTGPFVFTTWMFLLGISGFTNIPAGLGWSRP"
BASE COUNT          650 a          319 c          294 g          601 t
ORIGIN      
        1 gttaattatt ttttttcttg ttataataac acgtttattt gtaaagtcga ttatggaatt
       61 atatcctaat ccaccttgtc tttcagaatt caatcgtagt aaaagttctt cataattatt
      121 gttgttgcac caatctatga aatatgagat gttatcgata ccgcttttat tatttttttt
      181 agtgtgatta gcagtattta aaaattcctt gaaatcttca aattccattt ttaaaaaaaa
      241 gggatattag aataagaatt tatggcctgg accatcctag accagcaggt atatttgtaa
      301 atcccgaaat tccaagtaag aacatccatg tggtaaatac aaagggtcct gttaatgcag
      361 gtaaacccca cattccaaaa aatcgttgta gtgcaggcat tacgaagcta catgaaacag
      421 cagcaaagac tgcaatcata aaagcttgag gagttaatgg aagaaaactc gttaatgcaa
      481 tcattaccaa aacttgatta aatccatgta atcctgctcg agtttcggca gtaggaagtt
      541 tagttaagat tgccattgct acacctattg cagatccgac aagtgccatt accccaccta
      601 aataaagagg tgagaattca ttccattgag cagtaaatgc gttggtccac catggtctat
      661 cctgaccggt taagaatggt gcaagctcaa atgctaaagt gagtccaact acccaaaata
      721 ctcctgtttt ccagttttcg acaaaagtta cttgtgatac tcctttcaat gttgctttca
      781 taaattctcc tgcagtccat ttaaagttcg gttctacaat tggagcgggg tttccactag
      841 ctttgatcaa ttcttcactc tttgttggac ttggttctgg ccatatatca tgcccaaatc
      901 tttttgtagc gtacattaat gcccaagtag taaagataaa tgaggaagta aatccaggta
      961 ttgcccatga ttcttgtaat ccattaagga taaacatatc acccataagg tgcgccattg
     1021 ccatccagac tactgcagtg actgcagcac caaataccga tatgaaaaat gttgctttgt
     1081 tagatttgac aaaaggtcca gaccagaaag ccatgccagt tagtatagag ttataaccaa
     1141 acaaaccaaa tgcaaataat ccatatggtg ctccaagaag gattgccatt cctgctccta
     1201 ttaatcccga tattaccatc attataccag cgtttctcga agcaagaaag actcctgcaa
     1261 gtatcaaaat cccagttatt ggagagctaa acaatgggac ttcagaaatt ccattgaata
     1321 aaatataaaa aaaatccatt aaagggttgt tagacacaaa atctgccact accatgataa
     1381 ttgaaattca ttatgtcttc tttattgatt tgtacaacaa atatgtttat taataaaatt
     1441 agatcatacc aaagtatatt ttatgaacag atacttcaaa caattaagca aaaagaattg
     1501 caaattaagt aaataatgta ctaattttat aggtaatgat cttggtggat attatatttt
     1561 caataagaaa tcaagatgat aatattgata gtatcattat ccatcgtcat ttactattat
     1621 aatgttatct tagaatagga atgatcgaag gataaattag aagacaagaa atttaggata
     1681 agtagattag atataccaaa agaataaaat agatattatc aatgtcttat cttttacata
     1741 acacttatct tcctgagtca ctctcagaag gtaataattt gttttagttt ctttaatcct
     1801 tatctagatg tatatttatg aaaaaaatat tgtttatttt taaattaatg ctagaactta
     1861 aatc
//
LOCUS       DATABJ010000236         2026 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1931530, whole genome shotgun sequence.
ACCESSION   DATABJ010000236 DATABJ010000000
VERSION     DATABJ010000236.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2026)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2026)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2026
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1931530"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(680..844)
                     /locus_tag="VHF44_03855"
     CDS             complement(680..844)
                     /locus_tag="VHF44_03855"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124720.1"
                     /translation="MHPEDLNNIWICSNCGTAFAFRSDTMDHLKTTRHKRIKKFDLNT
                     GRLIEVRAMV"
     gene            complement(1009..1521)
                     /locus_tag="VHF44_03860"
     CDS             complement(1009..1521)
                     /locus_tag="VHF44_03860"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2124721.1"
                     /translation="MLNTCMSHQIFLKLQERLVQRNDDKTTIIIVDDDTDILTVTGRS
                     LEHAGFEVHAFADPLTALQHIQKDCKYCQVLVSDIRMPALTGFQLVRRVKDLRPEMKV
                     IMMTMFEVNKGEFEAVFPSTPIDGVIRKPFTSSQLVEKISGFLGTMTQGPTRRTDGNK
                     VSQISHLERT"
     gene            1641..1808
                     /locus_tag="VHF44_03865"
     CDS             1641..1808
                     /locus_tag="VHF44_03865"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124722.1"
                     /translation="MNDNIEKMNESIKDPSQRRNNEKNERADVGRDIKNRTDEAITKS
                     KIDGDPTRSDE"
     gene            1801..>2026
                     /locus_tag="VHF44_03870"
     CDS             1801..>2026
                     /locus_tag="VHF44_03870"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124723.1"
                     /translation="MNSIMESTIKDDNIDHNNNNNNNIEISNKCPKCISGDLIEHPSF
                     LSVPYTSRSKVAEKSKTAIEDQDADFVFKFF"
BASE COUNT          631 a          369 c          381 g          645 t
ORIGIN      
        1 tagacgggtg gtcactggag atgggatttg cagttatttt tgcctatatg gtagggtttg
       61 cgctgctagc aaagacaaag gcggtgtggc gagaaaaata aacacaagaa acatgacaat
      121 gatctgcttc aatatacccg cgaaatatta tcaaaagata ttacaaccta aacggtagtg
      181 ggtaattttt tagcagctgg ttacctcaat tcctctttaa agttcaagaa gacccggatt
      241 acacagaata taataacagc tgatgaatgt cctgtgcgcc agatgcctca aagctgtcca
      301 tcgtactcat tctttactaa gtgtcctgat tatagaaagt aacatcgata acgaaaataa
      361 ttttattaat atatcctgtt cggtaatccc gactgacatc agcttgttat tgacttccgt
      421 tagcagagat gtgggagtgg taactattct ttgatcaggg atcgcatttt taattggttt
      481 agctaattca atagcttgat agttattatt ggtaccacta ttttgtagat gcttatatca
      541 agctgaaaat agcgctctcc attaatggat ccctttcgca ctgacctata ttgaggctat
      601 ggcttatgaa tcaaataatg tattagaatg tggcggcttt agtgatgata atagaattat
      661 atcaagaggt ggtctgtaat tagaccatag ccctaacttc aatgagccta cctgtattca
      721 aatcgaattt ctttatgcgt ttatggcgag ttgtctttag atgatccata gtatcgctac
      781 gaaatgcgaa ggcagttccg cagttagaac atatccaaat attgttcaaa tcctctggat
      841 gcatatgtgt attgttcgct gtatgacagc agcaaattcg atttaagcat tgggagatct
      901 tcttatgtat ataatcacta taaatgacat ccttctctat tatactcact acaatctttg
      961 tcaggaacct gcaagatgag ccattctagt ggctgtttca atattctgtt atgttctttc
     1021 cagatgtgat atttgtgaga ccttgttgcc gtctgttcgt cttgtaggcc cttgagtcat
     1081 cgtgcccaaa aatccactta ttttttctac cagctgtgaa gatgtaaatg gttttcttat
     1141 taccccatca ataggagttg atggaaaaac agcttcaaat tctcctttgt ttacttcaaa
     1201 cattgtcatc attatgactt tcatttcagg tcgcaaatcc tttactcttc ttacgagctg
     1261 aaagcctgtc aatgcaggca tcctgatatc agataccaag acttggcagt atttgcaatc
     1321 cttctgaata tgttgtaatg ccgtaagtgg atctgcaaaa gcatgaactt caaaacctgc
     1381 atgttctaag cttctacctg tcactgtcaa aatgtctgta tcgtcatcaa caataattat
     1441 ggtagtcttg tcatcatttc tctgtactaa tcgctcttgc aactttagaa aaatttggtg
     1501 tgacatacaa gtatttaaca ttgactattt ctcttgcttc atttgccaaa acgaagacaa
     1561 attgagttta tatttgtagt atacttatca taggataaga catatttgtc atataggata
     1621 tggtctatag ttagacaagg atgaacgaca atattgagaa aatgaatgag agtataaaag
     1681 atccatctca aagacgcaat aatgaaaaga atgagcgagc agatgtgggg agagacataa
     1741 aaaaccgcac agacgaagct attacaaaat ccaaaataga tggcgatccc acgaggtctg
     1801 atgaatagta taatggaatc tactatcaag gatgataata tcgatcataa taataataat
     1861 aataataaca tcgagatcag caacaagtgt ccaaaatgta tatctgggga cctgatagaa
     1921 catccttcat tcttatctgt gccctataca tcgcgctcaa aggtcgctga aaaatcaaag
     1981 accgccattg aagaccaaga tgcagatttt gtctttaagt tctttt
//
LOCUS       DATABJ010000237         1770 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1931715, whole genome shotgun sequence.
ACCESSION   DATABJ010000237 DATABJ010000000
VERSION     DATABJ010000237.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1770)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1770
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1931715"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            183..1658
                     /locus_tag="VHF44_03875"
     CDS             183..1658
                     /locus_tag="VHF44_03875"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004820 - glycine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006426 - glycyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase"
                     /protein_id="HEX2124724.1"
                     /translation="MIYYEEIMKLALERGFYFPSCEIYADAPAGFWEYGPQGVNMKNK
                     FIDLWRRELVRRDGMMEIDGSQIMSKSVFIASGHINNFTDPIVKCSKCKSIFRADRFI
                     TEKIGEDVHEGMTNEEMNAIIKKHDLKCANCNGELDAVKRFNMMFKVNIGADQEEAYL
                     RPETCQTIFVDFSRIFKTMRGKLPLGIAQIGKSFRNEIAPRQGLLRLREFYQAEIEVF
                     CNPQKLNDLPKFEEIKNTILRLYDGKSSIELTADEGIRKGLLPNKLVAYYLALLNEFY
                     AKTGIDMKRTRFRRLTNTEKAFYSTIAFDFEVETSTGWLELVACNYRSDYDLQGHAST
                     SKQNLEVIDPSDQKKVLPHVFELSMGIDRSIFTILEHSYFEDKEHDDRIVLKLKPYLA
                     PVLLGILPLMTKDGLREKAQKIYSELKREFDTFYDESGSIGRRYRRLEEIGTPYAVTV
                     DKITMEDDTITVRYRDTMQQERIKISQLPLFLQTALFKNYR"
BASE COUNT          638 a          248 c          359 g          525 t
ORIGIN      
        1 tataattaca aaattttccg cttatagtaa tagcattttc aatatatata tagagaatta
       61 attgattcaa ttaaatatct gaatagaacc gttcattaat tgatgaagct agataatcaa
      121 atgaagcatt taagatagat aacagtaaat ttaaaacatg tgattgagga gttctagaga
      181 agatgatcta ttacgaagaa ataatgaaat tggcgcttga aagaggtttt tactttccaa
      241 gttgtgaaat ttatgctgat gctccggctg gcttctggga atatggtcca caaggagtca
      301 atatgaagaa taagtttatc gatctatgga gaagagaact tgttagacgt gatggaatga
      361 tggaaataga tggctctcaa atcatgagta agagcgtttt tattgcatca ggacatatta
      421 acaattttac cgatcctatt gtcaaatgtt caaaatgcaa atccattttt agagcagata
      481 gatttatcac agaaaaaatt ggtgaggacg ttcatgaagg aatgaccaac gaagagatga
      541 atgcaattat aaagaaacat gacttgaaat gtgcaaactg taatggggaa ttagatgctg
      601 ttaagcgatt taacatgatg tttaaggtta acataggtgc agatcaggag gaagcatatc
      661 taagaccaga gacgtgtcag acaatttttg ttgatttttc tcgaattttc aaaactatgc
      721 gaggaaaatt acctctagga attgctcaaa taggtaaaag tttcagaaat gaaatagctc
      781 caagacaagg cttgctgaga ctaagagaat tctatcaagc agagatcgaa gtattttgta
      841 atccacagaa attaaatgat ttgccaaaat tcgaagaaat taaaaataca attttgagac
      901 tttatgatgg aaaatcatct attgaactga cagcagatga aggcattaga aagggacttt
      961 tgccaaataa attagtagca tactatcttg cacttttgaa tgaattctat gcaaaaactg
     1021 gaatagatat gaaacgcact cgttttaggc gactgactaa tactgagaag gcattttact
     1081 caacaatagc ctttgatttt gaagtcgaga ctagtactgg ttggctggaa cttgttgcat
     1141 gcaactatcg ttctgactat gatcttcagg gtcatgcttc tacaagcaaa cagaatctcg
     1201 aagtaattga cccatcagat cagaaaaagg tcttacctca tgtatttgag ctttcaatgg
     1261 gaatagacag aagcattttc acaattttag agcactctta ctttgaagac aaggaacacg
     1321 atgacagaat tgtactaaaa ctcaaacctt atcttgcgcc tgtattgtta ggaatacttc
     1381 ctttgatgac aaaggacgga ctacgtgaaa aagctcagaa aatctattct gaacttaaaa
     1441 gagaatttga tactttttat gatgaatctg gctcgatagg tagaaggtat agacgattgg
     1501 aggagatagg aactccttat gccgtaacag ttgataaaat aacaatggaa gatgatacaa
     1561 ttacagttag atatagagat acaatgcagc aagaaagaat taagatatca caattgcctt
     1621 tattcttgca aacagcttta ttcaaaaatt atagataggt gtaaaatcgg tgacgacgat
     1681 gggtaggagt agtagtagta gtagagcata ttagcatgat aactattctt ttaatcagtg
     1741 gcagagtatg ctcgcggggt ttcttttatt
//
LOCUS       DATABJ010000238         1704 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1932862, whole genome shotgun sequence.
ACCESSION   DATABJ010000238 DATABJ010000000
VERSION     DATABJ010000238.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1704)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1704)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1704
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1932862"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..984
                     /locus_tag="VHF44_03880"
     CDS             <1..984
                     /locus_tag="VHF44_03880"
                     /inference="COORDINATES: protein motif:HMM:NF019604.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_function: GO:0050660 - flavin adenine dinucleotide
                     binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX2124725.1"
                     /translation="DNNNNIIDDMRNHNAAEYNEIFDVAIIGGGFAGLSAALLLGRYL
                     RPTVIFNGGDTRNSMSKHVHGYLGFENVQPKQFIQKAWGDVLQYDSIKVIKEKVNKVE
                     RDEQFFQLMTEDGRKAAKAKYIIIATGIRDVKPNVKNFEKFDGNGVWHCPHCDGFQST
                     NKKLAIITSKENNALRYAKEFLGWTKEITLFIQDDGYQLADNERTEAKTLGIDIVEND
                     GVIEIVGNQRGFPEGVVCKSGRFYDTEVIFYHLGYSIQNHLAKQIGCELDEGYVKINA
                     MQQTTVPNVYAAGDIDTDRHYVVLAAASGALAAISIYEEMLKDAIKMVKTT"
     gene            complement(1520..>1704)
                     /locus_tag="VHF44_03885"
     CDS             complement(1520..>1704)
                     /locus_tag="VHF44_03885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124726.1"
                     /translation="GLHITAKLGLSELSTDPYSMLDESTKMNIARLNKGELVMIHSAF
                     RHPIKISFPRAAFLRL"
BASE COUNT          626 a          235 c          337 g          506 t
ORIGIN      
        1 gataataata acaatatcat agatgatatg agaaatcaca atgcagcaga atataatgag
       61 atctttgatg tggctatcat aggtggagga ttcgctggct tgtctgctgc gttgctcctt
      121 gggagatatc ttcgtcccac cgtaattttc aatggtggag acacaagaaa ctcgatgagt
      181 aaacatgtcc atggctatct aggttttgaa aatgtccagc caaaacaatt tattcaaaaa
      241 gcttggggag atgtactgca atatgattca attaaggtga tcaaagaaaa agttaataag
      301 gttgaaagag atgagcaatt ttttcaactg atgacagaag atggaagaaa ggcagcaaaa
      361 gcaaaatata taataattgc aacaggcatc cgagatgtaa agcctaatgt aaagaatttt
      421 gaaaagttcg acggcaatgg agtatggcat tgtcctcatt gtgatggttt tcaaagtact
      481 aacaaaaaac tagccataat tacatctaag gagaataatg ccctacgcta cgcaaaagaa
      541 ttcttgggat ggaccaaaga gatcacattg tttatacaag atgatggata tcaattagca
      601 gataacgaaa gaactgaagc caagaccttg ggtatagata tagtggaaaa cgatggagta
      661 atagaaatag ttgggaatca aagggggttt cctgaaggag ttgtttgtaa aagcggtaga
      721 ttctatgata cagaggtcat attttatcat cttggatata gcattcaaaa tcatcttgca
      781 aaacaaatag gttgtgaact tgatgaaggg tatgttaaga taaatgccat gcagcaaaca
      841 acagtaccta atgtttatgc agctggagat atagatacgg acagacatta tgtagtcttg
      901 gctgcggcta gtggtgcatt agctgcaata tctatttatg aagaaatgtt aaaggatgca
      961 attaaaatgg taaagacaac ttagagtttt acctgtctct tttattcttt tacttaattg
     1021 tcattacttg ctagcaatga ttaaataaaa aacaaaaata tttatgtaga attattgaag
     1081 aatcgcgatc attatttatt gttggccaat gtattctcaa tactgcagag attggagtag
     1141 tagctgaaat tattgatgtt aatgaagatg aagtatttac atgcaaacct ggaaagtttc
     1201 aatagccaaa agaagagata ttattgtagc aattgatgag gaaccagaag aattttgagc
     1261 aacatttgaa tttttaaaat acattaactt tcaaaatgta gattcaatga tctattccca
     1321 gtatatctaa ctgagcatga tccattagaa aagcaatata ataagaaata ggctgattta
     1381 catttgcatt tagtttgcca ttaaactaac aaaagtcact accaaagaac ataaagcaaa
     1441 ttattggtat aaataagaat agaaaagaac aattatctaa aactttgggt tacaaatatg
     1501 tgaatggcag tagttcaatt caaagcctta aaaatgctgc tcgaggaaat gaaattttta
     1561 taggatgcct aaatgcagag tgaatcatca ctagttcacc tttatttagc ctggcaatat
     1621 tcatttttgt actttcatct agcatagagt aaggatctgt agataattct gataatccta
     1681 acttagctgt tatatgcagt cctg
//
LOCUS       DATABJ010000239         4722 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_411476, whole genome shotgun sequence.
ACCESSION   DATABJ010000239 DATABJ010000000
VERSION     DATABJ010000239.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4722)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4722)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4722
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411476"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..674)
                     /locus_tag="VHF44_03890"
     CDS             complement(<1..674)
                     /locus_tag="VHF44_03890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004013 - adenosylhomocysteinase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylhomocysteinase"
                     /protein_id="HEX2124727.1"
                     /translation="MSYKIADIRLAQNGKLSYQWARDHMVILDKIKIKNEKKKPLAGY
                     RIGFCLHITKETSVLVMTAKELGADVALCSANPLSVQDDIAAFLSSEGITTFAWRGET
                     KREYDACINSVLKFRPHIITDDGSDLHIAANKTKVKIFGGSEETTSGVKRLKALERRK
                     KLMYPVIAVNDAYTKHLFDNRYGTGQSTIDGILRTTSLFLPGKQIIVCGYGWVGKGVA
                     ARTRGMG"
     gene            1053..2732
                     /gene="metG"
                     /locus_tag="VHF44_03895"
     CDS             1053..2732
                     /gene="metG"
                     /locus_tag="VHF44_03895"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000166 - nucleotide binding [Evidence
                     IEA];
                     GO_function: GO:0004825 - methionine-tRNA ligase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006431 - methionyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEX2124728.1"
                     /translation="MQDKPYHKITSAIVTSALPYANGEIHLGHIASTYLPADIFARYS
                     RLRGREIYHVCASDDFGTPVLIKAEKENKTPSEYVDTWNKRDYDDFKLLGISFDFFSK
                     TSSVENIEFVQYVFNKLNDKGHIYKEEVIQFYCQFDNKFLPDRYVMGKCPNCGAENQY
                     SDLCEKCGRVPYQILDPMCGICGRSPIKKSSLHYFFKLSNFSDQLKVWLTNNENLQRD
                     VANYVINWINEGLQDWDITRDLSWGVPIPLSEAKGKVFYGWFDNHLCYISTFLTFIQK
                     SGHNGKEVWNNSEIYHFIGKDIVYHHYLFLPAMRMGLDEEYKLPNYLPTRGHLMLHNQ
                     KISKSRSWYIGLREFISAFNPDYLRFYIASITPYSQSDINFDWDSFLEKINNELIANI
                     GNFINRALTFTVKKFNNKVPEPTSYDIEDLSSIDEIKVISTEVGSLLSQNECDKALKR
                     ILKFTTHFNQYFQKKQPWSNINKAATTVYIAVNAVRSISIMLEPFIPFSSEKIWSQLG
                     MSGTVHQQEWQSVSELKISAGHNLGTIEPLFRKIERTEIEQQKARLGKKDE"
     gene            2725..3267
                     /locus_tag="VHF44_03900"
     CDS             2725..3267
                     /locus_tag="VHF44_03900"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000309 - nicotinamide-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide adenylyltransferase"
                     /protein_id="HEX2124729.1"
                     /translation="MNEKIIRGIMVGRFQPFHKGHLSLAKQIFKDCEELIIAIGSAQF
                     NYISQDPFTAGERILMIHQALLEAQLDLTKCYIVPIINDENNARWFAHLRSMVPHFDV
                     LFSGNQFVRSLVAENVKIKKPQFISKKYYNGTFIRKTIAERENWQKLVPNRVAEIIEE
                     IGGVRRIKMISHSDSNPQRW"
     gene            3585..4583
                     /gene="ilvC"
                     /locus_tag="VHF44_03905"
     CDS             3585..4583
                     /gene="ilvC"
                     /locus_tag="VHF44_03905"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEX2124730.1"
                     /translation="MTAKRWLDDEVNLGSIKDETIAVIGYGIQGRAQANNMKESGLKV
                     IVGLRKNGNSWKLAHNDGHEVVEIGDAAAKADIIHILIPDMEQANTYREEISPHLREN
                     KAISFSHGAAIHWQWIEPPKNIDVIMVAPKGPGQRVRELYSEGFGTPSLVAVFQDYTK
                     TAWNRVLAMAKGIGSTRPGVIQTTFKEEVETDWFGEQADLCGGASALVMHAFDTLVEA
                     GYQPEVAYFECLHELKLIVDLIHKYGITGMYNRVSETARYGGLTKGPKIIDRDSKIKM
                     INVLKDIQSGQFAEEWVEIYRKEGKNSFARYMKEIEDHPLEKIGKDIRKMMWPHES"
BASE COUNT         1581 a          790 c          893 g         1458 t
ORIGIN      
        1 cccatgcccc tagttcttgc tgcaacgcct tttcccaccc aaccatatcc acatactata
       61 atttgttttc caggcaggaa aagtgatgtt gttctcaaaa taccatcaat tgtgctttga
      121 cctgtaccat atctattatc aaacaaatgt tttgtataag catcattgac cgctattaca
      181 gggtacatta atttttttct cctctctaat gctttcaacc gttttacacc tgaagttgtt
      241 tcttctgaac ctccaaatat tttaactttg gttttattag cagcgatatg taaatcagat
      301 ccatcatctg ttatgatatg aggtcggaat ttaaggacag aattaatgca tgcatcgtac
      361 tctctttttg tttcgcctct ccaagcaaag gtagttattc cttcagaaga tagaaatgca
      421 gcaatatcat cctgtacgga taagggattt gccgagcata aagctacatc tgcaccaagt
      481 tcttttgccg tcatcactaa aacagaggtt tcttttgtaa tatgaaggca aaaacctatt
      541 ctgtatcctg caagaggctt tttcttttca tttttaattt tgatcttatc aagtataacc
      601 atgtgatcgc gagcccactg ataggataat tttccattct gcgctagtcg gatgtctgct
      661 attttgtaag acaatagatg atacaacaaa taccatataa aaaaagtaat cagaatatat
      721 agcgtgagct atatttctat tgaaatctaa ttatgctttg catttttgag tcggcatata
      781 tattgtaaga gataataatg caaagagctc atctcttatc aattaattgc catttactga
      841 gcctgagtgc tctatcccat tagaatgaat ataaattaac gagcatcata ataggtgaca
      901 tgacttcttg ttataataac tttagaatga tcttcttatt ttcgttcaaa gacgagtcta
      961 tatagtattg aaataacata caaattataa ggattctttg ttatttctag caagggataa
     1021 cttaaaatca gtcagattct gaccaacttt tagtgcaaga taaaccatat cataagatta
     1081 caagtgctat agttaccagt gcacttcctt acgctaatgg tgaaattcat ctcggccata
     1141 ttgcatctac ctatttgccg gcagatattt ttgccagata ttcaagactt cgtggaagag
     1201 agatatacca cgtctgtgcc tccgatgatt ttggaactcc agtgttaatc aaagctgaaa
     1261 aggaaaacaa aacaccatct gaatacgtgg atacttggaa taagcgtgat tatgatgatt
     1321 ttaaattact aggaatttct tttgattttt tttcgaaaac aagttcggtg gaaaatatag
     1381 agtttgttca atatgtattc aacaagctta atgataaagg ccacatttac aaagaagaag
     1441 taattcaatt ctattgtcag tttgacaaca aatttttgcc agacaggtat gtcatgggta
     1501 aatgtcctaa ttgcggagca gaaaatcaat attctgatct gtgcgaaaaa tgcggtcggg
     1561 ttccgtatca aatattggat cccatgtgtg gtatctgcgg ccgatcgcca ataaaaaaga
     1621 gtagcttaca ttactttttt aaactttcga atttctcgga tcaactcaaa gtttggttga
     1681 caaacaatga gaatcttcaa cgcgatgtag ccaactatgt aatcaattgg attaatgaag
     1741 gacttcaaga ctgggatata actagagatt tatcatgggg tgttccgatc ccattatctg
     1801 aagcaaaagg aaaagtattc tatggatggt ttgataacca cctttgttat atttctactt
     1861 tcttaacttt tattcaaaaa tcaggacaca atggcaaaga ggtttggaac aactcggaaa
     1921 tctatcactt tataggtaag gatatagttt atcaccatta tctttttttg cctgctatgc
     1981 gcatgggatt agatgaagag tacaaactgc ctaattatct tccaactaga ggacatttga
     2041 tgcttcacaa tcaaaaaatt tccaagagta gaagttggta tattggttta agagagttta
     2101 tatctgcttt taatccggac tatttgcgat tctatatcgc atcaataaca ccttactcac
     2161 aatcagatat aaattttgac tgggattcct tcttggaaaa aattaataat gaacttatag
     2221 caaatattgg gaattttatt aatcgggcat taacatttac tgtaaaaaag tttaacaaca
     2281 aagttcctga gccaacgagt tatgacatag aagacttatc aagtatagac gagattaagg
     2341 ttatctctac cgaagttggt tccctgttat ctcagaatga atgtgataag gcattgaagc
     2401 gaatcctgaa atttacgact cattttaatc aatattttca gaaaaagcaa ccatggtcca
     2461 acatcaataa ggctgcaaca actgtgtata ttgccgtaaa cgctgtcaga tcgatttcta
     2521 ttatgctaga gccttttatt ccattctcta gcgagaagat ttggtcccaa ttaggtatgt
     2581 cgggaaccgt acatcagcaa gaatggcaat ctgtatcaga attgaagatt tccgccggtc
     2641 ataatcttgg aaccattgaa cctctttttc gtaaaattga acgcacggag attgaacaac
     2701 aaaaagcaag attaggaaaa aaggatgaat gagaaaataa tacgtggaat aatggtgggt
     2761 cgttttcaac cttttcataa aggacacctt tcgcttgcca aacaaatatt caaagattgc
     2821 gaagaattaa taattgctat aggaagtgca caatttaact atatatctca ggatcctttt
     2881 actgctggcg agagaatatt aatgatacac caggcattat tagaggcaca gctagatctt
     2941 acaaaatgtt atattgtacc gattatcaat gatgaaaata atgcaagatg gtttgcgcat
     3001 ttgagatcaa tggttcctca ttttgatgtc ttgttttctg gcaatcaatt tgtcaggagc
     3061 cttgttgcag aaaatgttaa aatcaagaaa cctcaattca tatcaaaaaa atactacaat
     3121 gggactttta tacggaaaac aattgccgaa agggaaaatt ggcagaagct agtccctaac
     3181 cgtgttgctg agataattga agaaataggg ggtgtcagaa ggattaagat gatatctcat
     3241 tctgatagca atccacaaag atggtaaatc ttgataaacg gtctagatca tgccctgttt
     3301 gtcctaattg cggttcgaaa aaatttaaga ttttccagca tcttcaggaa agagtgatta
     3361 tagaatgtct gagatgtact aaaagaatca gtatttgaga tgacatgcca gtcgataatt
     3421 cattagtaga gttatcaaag tcttaataaa aaaactgaag gataaattgt ctttaaatgc
     3481 ctgatttagg ataatcgcaa cattataaaa atgacaaatt gcatatatcc tgcatcattt
     3541 ttgagatatt agcgcatata tataccgatt cctcactcat gctcatgact gctaaaaggt
     3601 ggcttgatga tgaagttaat cttggttcaa ttaaggatga aactattgca gtaataggtt
     3661 atggtattca gggtcgagcg caagccaaca atatgaagga gtctggtcta aaggtaatag
     3721 ttggtttaag aaagaatgga aattcttgga aattggctca caatgatggt catgaagttg
     3781 tggagattgg cgatgctgca gctaaagcgg atattatcca cattttaatt ccagatatgg
     3841 aacaagctaa tacctacaga gaagagatat ctcctcatct tagagaaaat aaagcaataa
     3901 gcttctcgca tggagccgct attcattggc agtggataga accaccaaag aacattgacg
     3961 tcataatggt ggcaccaaaa ggaccaggcc aacgggtgcg cgagttatat tctgagggtt
     4021 ttggtactcc atcactagtc gctgtattcc aggattatac taagactgca tggaatagag
     4081 tattggctat ggctaaagga atcggtagca ccaggccagg agtaattcaa actactttta
     4141 aagaagaagt tgagactgac tggttcggag aacaggcaga cttatgtgga ggtgcttccg
     4201 cattggtcat gcacgcattt gataccttag tagaggcagg atatcaacca gaagttgctt
     4261 atttcgaatg tcttcatgaa ttaaaattaa tcgttgatct tattcataaa tatggcatta
     4321 caggaatgta taatcgtgtt agtgaaactg ctagatatgg aggattaacc aaggggccga
     4381 aaattattga tagagattca aaaataaaga tgataaatgt tcttaaagat atacagtcag
     4441 gacaatttgc agaagagtgg gtcgaaattt ataggaaaga aggtaaaaat tcttttgcta
     4501 gatatatgaa agagatcgaa gatcatcctt tggaaaaaat aggaaaagat atacgcaaaa
     4561 tgatgtggcc acatgaatcc taattgatgg atgtatatct tataataaag ttgcatctta
     4621 gccataaatt cttcggatat ggactaacca cgagatgccc tcgatatctt tatatcctct
     4681 aaatcccgac agaagaaaaa caatatcaaa aactgattaa ga
//
LOCUS       DATABJ010000240         2380 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_411558, whole genome shotgun sequence.
ACCESSION   DATABJ010000240 DATABJ010000000
VERSION     DATABJ010000240.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2380)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2380)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2380
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411558"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..181
                     /locus_tag="VHF44_03910"
     CDS             <1..181
                     /locus_tag="VHF44_03910"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124731.1"
                     /translation="CWFVSEVDNNVVIRIISKLNRRRRTFFPQELQGLIIMLFYKAYL
                     AIRLLLMLLSGHIIV"
     gene            308..601
                     /locus_tag="VHF44_03915"
     CDS             308..601
                     /locus_tag="VHF44_03915"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124732.1"
                     /translation="MAILRVYKRNSTFMDLANLVDEISRMGLDDALQKYHNKPLEKEA
                     KSIVAGPSFLQFLNKLFQIQISAGDVIQFESGNNSKHYMLSATGTWDEIIRLE"
     gene            762..1646
                     /locus_tag="VHF44_03920"
     CDS             762..1646
                     /locus_tag="VHF44_03920"
                     /EC_number="4.6.1.-"
                     /inference="COORDINATES: protein motif:HMM:NF012437.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0009975 - cyclase activity [Evidence IEA];
                     GO_function: GO:0016849 - phosphorus-oxygen lyase activity
                     [Evidence IEA];
                     GO_function: GO:0032555 - purine ribonucleotide binding
                     [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate/guanylate cyclase domain-containing
                     protein"
                     /protein_id="HEX2124733.1"
                     /translation="MQLDISKDEVYQVIKNEASEEERKKASVKHLSNTSSLGMFYLDA
                     VININLAIKHAQHSMWKALKGVPEFNISMVEETQNILESYAKSKVTFVILHIDIVGSS
                     RMSMTLPVERLATIIQTFTQEMSLMIAAYGGYVLKYIGDAVLAFFPLSSHDQYLPCIN
                     AVNCARSMIKIMREGMNPILNEYGYPEIAVRVGVDIGENIVAQYDLGTHTPTIKDKQI
                     IKKPHLDILGYTISIATKMTIFAKPNQIIIGQFVYDVLDDVQKSTFKALPVSSDVWSY
                     VTNNTGDIYSLYCSNIKE"
BASE COUNT          827 a          370 c          470 g          713 t
ORIGIN      
        1 atgttggttt gtaagtgaag ttgacaataa tgtagttatc aggattatta gcaaactaaa
       61 tagaagaaga agaactttct tcccgcaaga attacaaggt ttgatcatta tgttatttta
      121 taaagcatat cttgctataa gactcttgtt aatgctcttg tctggtcata ttattgtatg
      181 agcactaaac aatttattca gacttcaaag aatataactt ttgcctatac acactcggct
      241 atgatataca catatcgtta tattgccatt tacattatat aagaagcaaa gaggatatat
      301 ctttataatg gcaatactga gagtctacaa aagaaattcg accttcatgg acttggctaa
      361 tctagtggat gaaattagta gaatgggatt agatgatgcc ctacaaaaat accataataa
      421 acctcttgaa aaggaagcca agagtatagt agcaggacct agtttcctac agttcttaaa
      481 caaattattt caaattcaaa tatcagctgg agacgtcata caatttgaat ctggaaataa
      541 cagcaaacac tacatgctct cagcaaccgg gacgtgggat gagataatca gattagaata
      601 actccgttgc ataagagaaa aaagattgaa tttaggacaa taagtttgca gaaaaagaga
      661 gagagaggga gaggtgctat aatttagtag atataggacg acaacatcaa cagacgattc
      721 tcaatctata caattctgga attctaccag atataattgc aatgcagcta gacattagca
      781 aagacgaagt ttatcaggtt ataaaaaatg aagcgagtga agaagaaaga aaaaaagcat
      841 ctgtcaaaca tctttcaaat acttcttcgt taggtatgtt ctatcttgat gcggtaataa
      901 atatcaactt agctatcaaa catgcacagc atagtatgtg gaaggctttg aaaggagtac
      961 cggagtttaa tatctcaatg gtggaagaaa cacagaatat tcttgaaagt tatgcaaaat
     1021 ctaaagttac atttgtaatt ttacatattg atattgtagg ctcaagtagg atgtctatga
     1081 ctctgccagt tgagaggctt gcaactataa ttcagacatt tactcaagaa atgtctctta
     1141 tgattgctgc atatggtggt tatgtgttaa agtatatagg agatgcagtt ttagcatttt
     1201 ttcctttaag ttcccatgac cagtatttgc cttgtattaa tgcagtaaat tgtgctcggt
     1261 ctatgattaa gataatgcgt gagggtatga atccaattct aaatgaatat ggttatccag
     1321 agattgcagt acgtgtaggt gtagatattg gtgagaacat agttgcacaa tatgacttgg
     1381 gtactcatac gcctactata aaggataagc agataataaa aaaaccgcat cttgacattc
     1441 taggatatac tattagcatt gcaactaaaa tgacaatatt tgcaaaacct aatcaaatta
     1501 taattggtca gtttgtatac gatgtattgg atgatgtaca aaaatctact tttaaagctc
     1561 tgccagttag ttcggatgtg tggagttatg tcactaacaa tactggagac atttacagtc
     1621 tgtattgtag taatataaag gaatgaaaag aaagagatgc ggatgagatc tgatataaag
     1681 caacaggacc tataacagtt taaaaacaag ttatttttaa gtaactatag gcgaagacat
     1741 tctgctgaag gtcactggat attgcactag gtgtgcgacg accactctgc cgcagggaga
     1801 tcttcccaga gatttaggta tcttgcacac agtcgcaaag tacaatcagg tgcctgccgg
     1861 agtttacgca tcggtgctgc atagcggggg cggcgggggg acaatttgtc gcggagagct
     1921 aattcgactc gaaccataga cgttaatcct gtaggctctt tattggacaa tttattcgac
     1981 atcgcgtcat tgacacctgg cataatcgat cagcttcagt ttattggatg tactgaatga
     2041 aaccccaaat cagaatctat tcagggcggt acaaaagaga gagtactaac atcaaatgaa
     2101 attcccaatc tcgtttgtaa tcctcattaa tcctaagttg tcttactact gctatcgaca
     2161 tggttgttct aaatacatgc tgatgaattt acatgagatt tagttgtaac ggtagtagca
     2221 atctgttcca aattgtagta aagttagcat ctatttgtat tataagtgat tataaatcta
     2281 cacatattga acagaaaagt ctactacaaa agcaatatct tttatagaaa atagagtata
     2341 tgctataaag acaaattgtt atcaaaggtt taggtaagca
//
LOCUS       DATABJ010000241         2684 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_411948, whole genome shotgun sequence.
ACCESSION   DATABJ010000241 DATABJ010000000
VERSION     DATABJ010000241.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2684)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2684)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2684
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_411948"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(311..1525)
                     /locus_tag="VHF44_03925"
     CDS             complement(311..1525)
                     /locus_tag="VHF44_03925"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124734.1"
                     /translation="MIFKKMLKGTDLTFDISLEKTQYTPGEIVRGTLAIKTEKGSKAR
                     KLVLLAEGKESTSITVTENTGVGNRRDTTSKTYTETNVFFSKDLSNLLQQSVIHNILQ
                     DGTLEILPQNKVIAFDFSLPTEDNLFSSYKGKHAKITYTVKGTVDIANKLDVNKEEHF
                     SVINPKNGIVAYNSSNISFDRESKSDTINLHSIDNAENILPSPITDSEEKDVDKGNYE
                     ARFEEIFGKKATNPTASKNSPRYLRFTGRGMSFDLETIFAKGREDFLKENTKARIDLI
                     DESNDITSYSPGHTVRGNIILQLPHNEEEEIRNKIKGMKITLSGIEHAFAQGLERVST
                     IEKYDKNIELNENLTGGKNDNNALSFEFEIPEGVNQTYIGKYSEYFWGLEAKVNIAWS
                     SDLTAKAIIEIV"
     gene            1975..>2684
                     /locus_tag="VHF44_03930"
     CDS             1975..>2684
                     /locus_tag="VHF44_03930"
                     /inference="COORDINATES: protein motif:HMM:NF013429.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003824 - catalytic activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase family
                     protein"
                     /protein_id="HEX2124735.1"
                     /translation="MPSYGLLTNPSNEMISEIIKIYELNFEYVEIGIEEPEGNPDVID
                     KRKDEIVTLLQGFKQKPIAHTAYWIDLASDYDFIRHAWINEAIREIRVARKLGIDLIN
                     FHANVNGMFYGEKRKTVLDNSIKSLREIVSHANKSSVTVMLENTPLSNGIHTVSEFKY
                     IVDNVPDLFVHLDIPHAFTSGGMRSVIDYINTFRDKIIHIHWHDNHGKKDEHLPIGDG
                     LIDHQGAIKALKDINYDRT"
BASE COUNT          827 a          495 c          478 g          884 t
ORIGIN      
        1 acttaaggtt ccaaagaatc aattagaaca gtacaagact caatggaaag agggttttgg
       61 agaggtaaaa tagtaggtaa ccataaggcg tcccttcaaa ccccttaaaa gtgggaaggt
      121 actgcgagat ttttttatat ctttatattt tttgtttaat catgacaaat atcaaaacaa
      181 gcatagtggc accatcatga tcttctgcct cctttaaaca atatttactg gaaaggcatt
      241 gcttaacaat ctcgtttaca ttcgtctgaa ttttcggctg cctccccgcc accccataaa
      301 tcatgctaga tcaaacaatt tctattattg ctttggcagt tagatcggat gaccaagcaa
      361 tattcacctt ggcttccagc ccccaaaaat actctgagta tttcccaata taggtttggt
      421 ttacaccctc tggtatctca aattcaaagg aaagagcgtt attatcattc tttcctcctg
      481 ttagattttc atttagttct atatttttgt cgtatttttc aattgtactt actctctcca
      541 acccttgcgc aaatgcatgc tctataccgc ttagagtaat tttcattcct ttaatcttgt
      601 ttctaatctc ttcctcttca ttatggggaa gctgtagtat tatgttgccc cttactgtat
      661 gaccaggaga ataggatgta atgtcgttgc tttcgtcgat gaggtcaatt cttgctttgg
      721 tattttcttt gagaaaatcc tcacgacctt ttgcaaatat cgtttcaaga tcaaagctca
      781 tccctctgcc agtgaatcta agataacgtg gactattttt agaggcggta ggatttgttg
      841 cctttttacc aaatatttct tcaaatctcg cttcgtagtt tcctttatca acatcttttt
      901 cttctgagtc agttattggg gagggcaaaa tattctcggc attgtcaata ctgtgaaggt
      961 taatagtgtc gctcttactc tctcgatcaa aggaaatatt gctactattg tatgcaacta
     1021 ttccattttt aggattgatg actgaaaaat gctcttcctt atttacgtcc aacttatttg
     1081 caatatctac agttcctttt accgtatacg ttatttttgc gtgcttaccc ttgtatgaag
     1141 agaatagatt atcctcagta ggaagactaa aatcaaatgc tattacctta ttttgtggca
     1201 atatctccag agtcccatct tgaagaatgt tatgaattac agattgttgg agcaaattcg
     1261 aaaggtcctt tgagaagaag acgttagttt cggtgtaagt ttttgaagtt gtatctcgtc
     1321 tgttaccaac tccagtattc tctgttacag ttatgctggt agattcttta ccttctgcta
     1381 ataaaaccag cttccttgct ttagaacctt tttctgtctt aatagcaagt gttcctctga
     1441 ctatttcacc aggtgtatat tgtgtttttt ctagacttat atcaaaggtt aagtcagtac
     1501 cctttagcat cttcttaaag atcataagtt gtgaccctcc tgaggagcta tggagcaaat
     1561 gaattaaagt ttatgcttat caattgataa taccttgttg ataactcgat tggttaacta
     1621 cattgtgact cattcgcgca aacagaaaaa ctttaaaaag ctaaccagtt tcactcagaa
     1681 ttaatagaat ccttatatgc aacctatttc cttccggttt tccacgctac ctacgtctgt
     1741 ttgacctatt ccattcacag tctcatttag gtagccataa acaaaaataa ttgaaacaag
     1801 cctctaagga tgataatgat aaataggcaa ggagcagagc cgagagcaat cgatcttgga
     1861 gatatctaaa ttagaaaaag gtcattctga ccacgctaaa gatacggatg ggttgggcct
     1921 gcttttgaaa gcaaaaaata aaacacattt acggtatgta ggaactatac tacgatgccg
     1981 tcatatggat tacttaccaa tccctcaaat gaaatgataa gtgagataat caagatatat
     2041 gaactaaatt ttgaatatgt tgaaatcggc atagaagaac ctgaaggtaa tccagatgta
     2101 atcgataaga ggaaggatga aattgtaacg ctccttcagg gattcaagca aaagcctatt
     2161 gctcatacag catattggat agatttggct tcagattatg attttatcag gcatgcttgg
     2221 atcaatgagg caataaggga aatcagagta gctagaaaac taggcataga cttgataaat
     2281 tttcatgcta atgtcaatgg catgttttat ggagaaaaga gaaagacggt tttggataat
     2341 tcgatcaaaa gtcttagaga aatcgtaagt catgccaata agtctagcgt aactgtaatg
     2401 ctagaaaata ctccactttc taacggaata cacactgtaa gtgaattcaa gtatattgtt
     2461 gataatgttc ctgacttatt tgttcatcta gatattcctc atgcttttac ctcgggagga
     2521 atgaggtcag taattgatta cataaacaca ttcagagata aaataatcca tattcattgg
     2581 catgacaacc atggaaagaa agatgaacac ttacctattg gcgatggttt aatagatcat
     2641 caaggagcaa tcaaagcact aaaagacatt aactatgata gaac
//
LOCUS       DATABJ010000242         2252 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_412667, whole genome shotgun sequence.
ACCESSION   DATABJ010000242 DATABJ010000000
VERSION     DATABJ010000242.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2252)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2252)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2252
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_412667"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..399)
                     /locus_tag="VHF44_03935"
     CDS             complement(<1..399)
                     /locus_tag="VHF44_03935"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124736.1"
                     /translation="MLFNNKITSIFINVAQHDQYEQQQVYVIKMSPIYDCMSKQPQSS
                     SEEVKIRLKHRDWEVEITCLENKVKQVVENVLSGIDNSYANIDPTLNNQLTEIRKEID
                     SLKLQIDSSSINQIQAINATELQRKAIPKGG"
     gene            398..1429
                     /locus_tag="VHF44_03940"
     CDS             398..1429
                     /locus_tag="VHF44_03940"
                     /inference="COORDINATES: protein motif:HMM:NF020933.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA double-strand break repair nuclease NurA"
                     /protein_id="HEX2124737.1"
                     /translation="MTTQLNIPTDINFTEFGYMFYPTLGHCLPSELHKALKGKKIIFS
                     VDEKTLVPIEGWGKRPNPYCAETITTIQPIKGNTIVAALDSSSIQIAETEDGILYAVK
                     SGIAISVSEHALMHFKIGPILFYLSEETIKQSELDHRLTKLILFDSDSAKRLIRIRVE
                     RAIQMELSSHLTKSIILIDGSLKSSLFENKSQGITKVAENCLLNKNSIVGISKNTKIK
                     ILDSISSPLTKVRGPAYMDIEMIIKSLIRNTIGNNLLVKFGNNNSHVLRADVVTNNGN
                     IEETLGRLLGNDSIAGGYPETLRLAHHISTFTSTEISCLRSHVLNNYDVIELAAEDIR
                     RTLLGSIPI"
     gene            1426..>2252
                     /locus_tag="VHF44_03945"
     CDS             1426..>2252
                     /locus_tag="VHF44_03945"
                     /inference="COORDINATES: protein motif:HMM:NF014044.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF87 domain-containing protein"
                     /protein_id="HEX2124738.1"
                     /translation="MKILSKSGNELIMIAMQTDTANKGDYLLIEDENSKRKMIVQIYD
                     EEYLSSQSLIEDIVKDEVVTASSMENLHDPLNIGSLSKMIRDARLFHTKIRATIDSSS
                     KLSSDVTWLPSRVYSKIRRLKISELCSFLGRTGIFPISIGDAGTENEEFEIYAEDLDG
                     RLNIITGKKESGKSHLSKMLVKTLVQHGAFVIVFDLNNEYGGLAWNHDGTPSSIKDQI
                     MILEPGNGLKFSLDYCGKTAMSSMLRNALDTPAASLREFFRIWDSLENKQTTLRIEA"
BASE COUNT          756 a          371 c          429 g          696 t
ORIGIN      
        1 tcctcccttt ggtatagcct tgcgttgtaa ctctgtcgca tttattgcct gtatttgatt
       61 aatactactt gaatcgattt gcaattttag agagtcaatc tcttttctta tttctgtaag
      121 ctgattgttc aaagtaggat caatattagc atatgaatta tcgataccag aaagaacatt
      181 ctctactacc tgtttgactt tattctcaag acaagttatt tcaacctccc aatcccgatg
      241 ttttaatctt attttgactt cttcggagga agattgaggt tgtttactca tgcaatcata
      301 tatcggtgac attttgatca cataaacttg ttgctgctca tattgatcat gttgcgcaac
      361 attaataaag atggaagtta ttttattgtt gaacaacatg accacgcaac tgaatattcc
      421 aacagacata aattttactg agttcgggta tatgttttat ccaactctag gacattgtct
      481 accaagtgag cttcacaaag ccctcaaagg aaaaaaaatt attttcagtg ttgatgagaa
      541 aactcttgtt ccgatagaag gctggggtaa aagacctaat ccttattgtg cagaaacaat
      601 aacaactatt caaccaatta aagggaatac aatagttgct gcacttgact ctagcagcat
      661 ccaaattgca gaaactgaag atggtattct ttatgctgta aaaagtggaa tagcgatatc
      721 agtcagtgag catgcgttaa tgcattttaa aattggcccg atattgtttt atttgagtga
      781 ggaaactatt aagcaatcag agcttgatca tagattaaca aagcttatct tatttgacag
      841 tgattctgca aaacgattaa ttagaatacg agtcgagaga gcaatccaga tggaactttc
      901 gagtcatctt acaaaatcta taatccttat agatggctcg ttaaaatcat ctctgtttga
      961 gaacaagagt cagggtatta ctaaagtagc agagaattgc ttactcaata agaattcgat
     1021 agtgggaatc agcaaaaata ctaaaattaa aattttggat agcatttcta gtcctcttac
     1081 aaaggtccgt ggtccagcct atatggatat agagatgatt atcaaaagct taattcgaaa
     1141 tactataggt aacaatcttc ttgtaaagtt tggaaataac aatagtcatg tactacgtgc
     1201 ggatgttgtt acaaataatg gtaacataga agaaaccctt gggaggttac ttggaaatga
     1261 ttcaatcgca ggagggtacc ctgaaacatt gcgactagct catcacattt cgacctttac
     1321 tagcaccgag atatcatgtc ttagaagcca tgtattgaat aactatgatg tgatagagct
     1381 tgcagcagaa gatatccgta ggactctgct tggatcaata ccaatatgaa aattctatca
     1441 aaaagtggta acgaactgat tatgatagcg atgcaaacag atacagctaa caagggtgat
     1501 tatttgttga ttgaagatga aaactcaaag agaaagatga ttgtccagat ctatgatgaa
     1561 gaatatcttt cctcgcaatc tctgatagaa gatattgtta aggatgaggt agtaactgct
     1621 tctagtatgg aaaatttgca cgatcctctc aatattggaa gtctatcaaa aatgatcaga
     1681 gatgcaagac tgtttcacac taaaataaga gctaccatag attcatcaag taaattatca
     1741 agtgatgtta catggcttcc ctcaagggta tattctaaaa taagacggtt aaaaatttct
     1801 gaactatgct cctttcttgg aaggacagga atatttccta tttcaatcgg cgatgctggg
     1861 acagaaaatg aagaatttga gatctatgca gaggatctag atggcagatt aaatattatt
     1921 actgggaaaa aagaatcagg caaatcacat ctttccaaga tgctagttaa aacgctagtc
     1981 caacatggag catttgtaat tgtatttgat cttaacaatg aatatggtgg tctggcctgg
     2041 aatcatgatg gaactccttc ctcaattaag gatcaaataa tgatactgga acctggaaat
     2101 gggctcaaat tctcgcttga ttactgtggt aagacggcta tgtctagtat gttaagaaat
     2161 gcgcttgata ctccagctgc atccttacgt gaatttttta gaatatggga ttcacttgaa
     2221 aataaacaga cgacattaag aattgaagct tt
//
LOCUS       DATABJ010000243         1658 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_619611, whole genome shotgun sequence.
ACCESSION   DATABJ010000243 DATABJ010000000
VERSION     DATABJ010000243.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1658)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1658)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1658
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_619611"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            490..1041
                     /locus_tag="VHF44_03950"
     CDS             490..1041
                     /locus_tag="VHF44_03950"
                     /inference="COORDINATES: protein motif:HMM:TIGR03618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PPOX class F420-dependent oxidoreductase"
                     /protein_id="HEX2124739.1"
                     /translation="MQRDNNIINSVEIVNIPPSKDEGAFNEVDIPSGASELDKKDIQR
                     LFQGRNLAFVSTLSEDGSPHITPMWADMEGDLILINTFETSAKSKNITKDPRISISVV
                     ENNNPYNMVSIKGRVIDQTTEGADEHLKKLAKRYLGIGKYYYREPNRRRVILKIKPEK
                     AMGLSIHPAFYFLAYSPWNRHKV"
     gene            complement(1184..1597)
                     /locus_tag="VHF44_03955"
     CDS             complement(1184..1597)
                     /locus_tag="VHF44_03955"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124740.1"
                     /translation="MAAKVNLLYYAAGATTAIAGILHLIQASNVLEFSLNFFIFFIVA
                     GIAQLFWVVPMIRRWGLPWYYVGIGGTIVLIILYAITRIEGNPITGRGGPVSPMAFAI
                     ELFQVAFIGLSIAIIVYEMKRKKQLSSGKTASEKL"
BASE COUNT          548 a          315 c          296 g          499 t
ORIGIN      
        1 atcacagaac aagaaccagg gaaagcatgt cattatagat gccaaccatg tattgggata
       61 gtacttctct ataactctgg tggcaataaa ccaccatgtt aagtcaatac cgcaattaac
      121 atctacaagg tatgaatcta agggtctcta attaaagacc taatgtcgat atgaagggac
      181 tattgaaagt gagcggttgt tgaaaatcta tgccattgat tatattgagg gttttaatct
      241 cattgtcgcc ttcaaaataa taaaacagaa agtctgtctt tggattcaaa tgaattatta
      301 tctaaatccc ctacattacg tcgcaataac ccttcttagc ttcctgttgc acatgatgaa
      361 tagcaaggat cctgtttttt ggggatatca cttcgcgact caattggccg atattgattt
      421 tcattcgaat ctctcatatg ttgaaaaatc gtcaaaaata attaataccc ggtttatgat
      481 tgataagtat tgcaaagaga taataacata ataaattctg tcgaaatagt caacattcct
      541 ccttcaaaag atgagggagc atttaacgaa gttgatatcc catctggggc atctgagctt
      601 gataaaaaag atatacaacg cctttttcaa ggtagaaatt tggcttttgt atctactcta
      661 tctgaagatg gatcgccaca tattacacca atgtgggcag atatggaagg agatctaatc
      721 ttgataaata cttttgaaac ttctgcaaaa agtaagaata taacaaaaga tcctagaata
      781 tccatatcgg tggttgagaa taataatcca tacaacatgg tctccatcaa aggtagagtt
      841 attgaccaaa caactgaagg agctgatgaa catctaaaga aacttgccaa aagatatctt
      901 ggtattggca aatattatta tagagaacca aatcgtaggc gagttattct aaaaataaag
      961 ccagagaaag caatgggtct atcgattcat cctgcttttt atttccttgc ctattctccc
     1021 tggaacagac acaaggtata gagtatgtat agcgtatata gtagtagcat cgacaggcac
     1081 gtcttaacac atgagagacg agctctagag cttggttagt ggaacccgat tacatatctg
     1141 aatctaatcc cgactagcct acatcaattt gagtccgtaa agttcatagc ttctcagatg
     1201 cagtttttcc actgctgagt tgttttttcc ttttcatctc atagactatt attgcgatac
     1261 taagtccaat gaaggcaact tggaacagtt caatagcaaa tgccattggg ctaacaggac
     1321 ctcctcttcc cgtgattgga ttaccctcaa tcctagttat tgcataaagt atgattagca
     1381 ctattgttcc accaatgcct acatagtacc atggcagtcc ccatcttctt atcattggta
     1441 ctacccagaa caactgggct attcctgcta ctataaagaa tatgaagaaa ttaagactaa
     1501 attccaatac atttgaagct tgaatcagat gtaaaatgcc agctattgca gttgttgctc
     1561 ctgcggcata atatagaagg tttacttttg cagccatttt ttcttgaata gcttagatag
     1621 gacatagaac aatatataat catctaatgc gaacaccc
//
LOCUS       DATABJ010000244         1790 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_142396, whole genome shotgun sequence.
ACCESSION   DATABJ010000244 DATABJ010000000
VERSION     DATABJ010000244.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1790)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1790)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_142396"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1661)
                     /gene="dinB"
                     /locus_tag="VHF44_03960"
     CDS             complement(<1..1661)
                     /gene="dinB"
                     /locus_tag="VHF44_03960"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: protein motif:HMM:NF002677.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003684 - damaged DNA binding [Evidence
                     IEA];
                     GO_function: GO:0003887 - DNA-directed DNA polymerase
                     activity [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEX2124741.1"
                     /translation="MKYYVGCSVWKNQTWVKDFYPATLEPENYLEYYSNIYDFAEVDL
                     SSGNVYSKFLNKFTFRKWTKNSHDNFRFTLKVPGEINNNDNGIGLGNFLEKLAPLEEK
                     ILAVVIEQPRELTLKDGREWLEEILDICNYHGYSAALEFNHFSWFQDLTYNILKKHNA
                     ALIWSDNRYPYHPVVTADFLYLRITENEKKWIEKIKEKGREEADDIDSVIVVVDSPTK
                     ANTVLNVLNLPVRKYGYNQWIGKVIMCVDLNAFFPSCEELRDPTIVGKPHAVIMTEQK
                     ENITKGAVASCSYEARNFGVRSAMSLSKAKELCPTLVLRPVDISYYRQVSEKVMNILE
                     EYADVLEQSSIDEAYLDCTNKMMMRRMMTTETATATTIEQYASTIKKAIKERIGLLTS
                     VGVASTKSAAKIASDFQKPDGLTIIYPDQLQKFFEHLGVERISGIGPKTQQILKEMGT
                     ETIGQLAKHDVQKLIEKFGKKNGIWMWRVANGRDDEPVIPREDHISLSTEQTLDSFTG
                     NKETILKYLNQLVDEIYERIRRQGYEFKTVGVKLVRSDFSIETRET"
BASE COUNT          545 a          349 c          254 g          642 t
ORIGIN      
        1 gtttcccttg tttcaattga aaaatcagat ctaacaagct tcacgcctac tgttttaaac
       61 tcatatccct gtcgtcttat tctttcataa atttcatcaa ctaattgatt caagtatttg
      121 agtatcgttt ctttatttcc agtaaaggaa tcaagtgttt gttcagtact taaggatata
      181 tgatcctctc tgggtataac aggctcatcg tcacgaccat tagccacacg ccacatccaa
      241 attccattct ttttgccaaa tttttctatt aatttctgaa catcatgctt tgcaagctgg
      301 cctatagttt cagttcccat ttcctttaga atttgttggg ttttaggacc tattcctgat
      361 attctctcaa ctcctagatg ctcaaagaac ttttgtaatt gatcaggata gataatagtc
      421 agtccgtcag gtttttgaaa atcagatgca atctttgcag cagattttgt agatgctact
      481 cctacagagg ttaaaagtcc aatgcgttct ttaattgcct ttttaattgt cgatgcatat
      541 tgttcgatag tagtagcagt agcagtttca gttgtcatca ttcttctcat catcatcttg
      601 tttgtacaat ctaaatatgc ctcgtctata ctagattgtt ctaaaacgtc tgcatattct
      661 tctaatatgt tcataacttt ttctgaaacc tgacgataat atgatatatc tactggtctt
      721 aagacaagag tgggacataa ttcttttgcc tttgaaagag acatagccga tctgacacca
      781 aaatttctgg cttcatatga acaagaggct actgcacctt tagttatatt ctctttctgc
      841 tccgtcataa ttacggcatg tggttttcca actatcgttg gatctcgtag ctcttcacaa
      901 gatggaaaaa atgcattcaa gtcaacacac attatcacct taccaatcca ttgattatag
      961 ccatattttc tcacaggcaa atttagtaca tttaatacag tatttgcttt tgtaggtgaa
     1021 tcaacaacaa caatcacaga gtcaatatcg tctgcttctt ctcttccttt ttcctttatt
     1081 ttttcaatcc atttcttttc attttcagta attcttagat atagaaaatc agcagtaacg
     1141 acaggatgat aaggatatcg attatctgac catattagag cagcattatg cttctttaag
     1201 atattatatg tcaaatcctg aaaccacgaa aaatgattaa attctaaagc agctgaatag
     1261 ccatgataat tacaaatatc caaaatctct tcaagccatt ctcggccatc ttttagagtc
     1321 aattctcttg gctgctctat taccacggca agaatcttct cttcaagtgg tgcaagtttt
     1381 tctaaaaaat ttccaaggcc aattccatta tcattattat taatttctcc tggtactttt
     1441 aaagtaaaac gaaaattatc atgactattt tttgtccatt ttctaaaagt gaatttattg
     1501 aggaatttac tatagacatt accactactt aaatcaactt ctgcaaaatc gtaaatattc
     1561 gagtagtatt caaggtaatt ttcaggttct agggtagcag gataaaaatc tttaacccat
     1621 gtttgattct tccaaacaga gcaaccaaca taatatttca atctatcgtc taatcctcca
     1681 tgagttaaca aatatattat taaggtgaaa atgtgttagc taaaaaatat tgtcatctta
     1741 catatatgta tcgaagatga cccttctgaa aaagaaggca cacattttct
//
LOCUS       DATABJ010000245         3376 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1937797, whole genome shotgun sequence.
ACCESSION   DATABJ010000245 DATABJ010000000
VERSION     DATABJ010000245.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3376)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3376)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3376
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1937797"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            180..764
                     /locus_tag="VHF44_03965"
     CDS             180..764
                     /locus_tag="VHF44_03965"
                     /inference="COORDINATES: protein motif:HMM:NF013987.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124742.1"
                     /translation="MGNIRRSRGYSYEHTLVQRLNSELWNARRLGGSSTGLPDIIAVN
                     NIEAVLLSIEAKSGTGDALYVPSDQIYRCLQIRDMFSFYKSRHAILAFKFMRKKRFKR
                     KGKIVYEHRKLLEYYKIADKLDKINDITMIKCTYQGKTFFIRGNECTKLYLPNYTMPF
                     QKVGVTKVQNLIHNKSILKTKRRRAFISPYSHLS"
     gene            777..1451
                     /locus_tag="VHF44_03970"
     CDS             777..1451
                     /locus_tag="VHF44_03970"
                     /EC_number="5.1.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate epimerase"
                     /protein_id="HEX2124743.1"
                     /translation="MKSITSDQMYKIENNSHNLIGMHRVYMMENAGHGLADFIVNKFK
                     IRLKEKKIVALCGLGNNGGDGFVASRHLTCYCPAYVTVILFGYPSDIRSEEAHINWEI
                     LQKMNSVEVIFSKDLNDYIKAKINKADIIIDGIFGTGIKGEIRYPYAHAIDLINSSKA
                     YVVSIDVPSGLDPNTGIVHEKCVKANATVTFHRMKKGLLKNKKYTGTIHVERIGIPPE
                     AERGVL"
     gene            1489..2079
                     /locus_tag="VHF44_03975"
     CDS             1489..2079
                     /locus_tag="VHF44_03975"
                     /inference="COORDINATES: protein motif:HMM:NF012955.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEX2124744.1"
                     /translation="MANFTYVIVDEEARKAAIIDPSWNLEKIFYHLKENSWKLEYIIN
                     THSHFDHVLGNEQVAAATGAKIIQHKNSPLNKQIPVDDGETIKLGKIQIKILHTPGHS
                     KDSICLIADGKVVFTGDTLFIGNCGRTDLPGSDPAEMYHSLFDRVAKLDGSLTVYPGH
                     DYGPSPTSTIETEKKTNYVLQPRSKKDFLTFMASGD"
     gene            complement(2874..3041)
                     /locus_tag="VHF44_03980"
     CDS             complement(2874..3041)
                     /locus_tag="VHF44_03980"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124745.1"
                     /translation="MATAFRYDDIALFLKLYRLSKVTRMIMPYVVKLLEIANNMPEIE
                     WDITDCKRGIK"
BASE COUNT         1155 a          535 c          606 g         1080 t
ORIGIN      
        1 aataaagact ttgccattat gattaactga gttttgcacc gtagaatgtg tctatagata
       61 ctcttcaaaa taacaatggg ataaagaata gaaataacga aaatatgtat cttaaataaa
      121 aggttcaata ttattgacag agaaaaaatt taaacagctt atgctgagac aatgtttgat
      181 tggggaatat tcgtcgaagt agaggatata gttatgaaca tactctcgtt cagagattaa
      241 atagcgagtt gtggaacgca cgacgattag gtggttctag tacaggatta ccagatatta
      301 ttgctgttaa caatatagaa gctgtattgt tatcaattga agcaaaatct ggaacaggtg
      361 atgcattata cgttccttcc gatcaaatat acagatgttt gcaaattcga gacatgttta
      421 gcttttacaa atcaagacac gctattctgg catttaagtt tatgcggaaa aaaagattta
      481 agagaaaagg taaaattgtt tatgaacatc gtaagctgct cgaatattac aaaattgcag
      541 ataagcttga taagataaat gatattacca tgataaagtg tacttaccaa ggcaaaacat
      601 tctttattcg tggcaatgaa tgcacaaaat tatacctacc taattacacc atgccttttc
      661 aaaaagtcgg agtaactaag gtacaaaact tgattcataa taaatcaatc cttaaaacaa
      721 agagaaggag agcttttatc tcgccttatt ctcatctatc ttaagcgagc agatggatga
      781 aatctattac atcagatcaa atgtacaaga ttgaaaataa cagtcataat ctaattggaa
      841 tgcatcgagt ttatatgatg gaaaatgctg gacacggact ggctgacttt atagtcaata
      901 aattcaaaat tagattaaaa gaaaagaaaa tagttgctct gtgcggccta ggtaataatg
      961 gtggagatgg attcgttgct tcaagacatt taacttgcta ttgccctgct tacgtgactg
     1021 taatactatt tggatatcca tctgatatac ggagcgaaga ggcacatatt aattgggaaa
     1081 ttctacaaaa aatgaattcg gtagaagtaa tttttagcaa agatctaaat gactatatta
     1141 aagccaaaat taataaagca gatattatta ttgatggaat ctttgggacg ggaataaaag
     1201 gagaaattcg ttatccttat gctcatgcaa ttgatcttat taactcatca aaagcctatg
     1261 ttgtgtctat cgatgttcct tctgggcttg atccaaacac aggaattgta catgagaaat
     1321 gtgtaaaggc taatgctaca gttactttcc acagaatgaa aaaaggattg ctcaagaaca
     1381 agaaatatac aggaaccatt catgtagaac gtataggcat accaccggaa gccgaaagag
     1441 gagtattgtg atacctacat gaaagtcttc caatttctcg taggccagat ggctaatttt
     1501 acatacgtta tagtcgatga agaggctcgc aaagctgcta taattgatcc gtcatggaat
     1561 ttggaaaaga tattttatca tttaaaggaa aactcttgga aactcgaata tataatcaat
     1621 acacacagcc actttgatca cgttttaggg aatgaacaag tggcagcagc gacaggtgca
     1681 aaaataattc agcataaaaa ttcaccactt aacaaacaaa ttccagtaga tgatggcgag
     1741 acgatcaaac tgggaaaaat acagataaaa atattgcata caccaggaca ttctaaagat
     1801 agtatctgcc ttattgctga tgggaaagta gtgtttactg gtgatacttt atttatagga
     1861 aattgcggta gaactgatct tccaggaagt gatcctgctg aaatgtatca tagcctattt
     1921 gatagagttg caaaacttga tggatcatta actgtttatc ctggccatga ctatggaccg
     1981 tctccaacat ccaccatcga aacagagaag aagacgaatt acgtattaca acctagatca
     2041 aaaaaggatt ttctaacctt tatggcaagc ggtgattgaa tatgaatcag agaaatatct
     2101 tgatatttat tatttaaaaa aacagttttg atatcataaa ctctcgtttg taatcgaatt
     2161 tttgtcccga tcattcccat ctgcaagaaa taatattgta gttcactgtt gcagatgcta
     2221 atatagatct tatcaattac actttaatcg gtgattagga ttatctctat tgtggtaatt
     2281 gtaaatctgt tttttttagc accttaaggc aaaccgaatc cctcaataat atcaaagggc
     2341 cctctgatgt tggccgatct tttatttttg attgttgatg acggctcatt tcctaagtct
     2401 tccatcctgt aaatttcctt tgggttgcaa cttagcaaaa atatcagaca agtgatgttg
     2461 tcgatatctt taatgttagc aaccatacga ttttgccatg attcttggaa tattactagc
     2521 aaaaaataat gaccggatat tattatgaga gagtatttct aattgtacta ttactattac
     2581 tactacttta ggaagtcttg aacaccaccc ttattgatgt aaaatataaa tgcattaaca
     2641 ctatggcaga cagaaaatct tcatgatcaa aaaaaaggta tgctgaatgc aattaaaaca
     2701 caaaagatag ataattatat attaaaagat gatgttttcg cggcgatatc gcattttggc
     2761 aatccaatta ttcttacagt agctggtaga tgtgatggcg aaataacttg tagttgaagg
     2821 gttatgattg ctggaagagc acagatgtct gtggtaattg ctgtttctag atttcatttt
     2881 atacctcttt tgcagtccgt tatatcccat tcaatttctg gcatgttatt tgcaatttca
     2941 agaagcttaa cgacatatgg cataatcata cgcgtaacct tagataatct atataatttc
     3001 agaaatagtg caatatcatc gtatctaaac gctgtagcca ctttagctcc taatgctcta
     3061 aaatttagtt gcccatacca tcttagattt aatgcaatcg atacatctaa tggagtcttt
     3121 ctattaaaaa agggttgtag gtttgggctg atgttaggga ctctcttgct atttgatgtt
     3181 tgattttacc ttaattgtaa agctgtaaaa caagtctttt tctttcttgt cttgttatta
     3241 cttagatttt ttttactagt cagcctaatt atataaaaca caatcttaaa gctatcgtta
     3301 ccacttgttg ccttttctgt tgccttgtta tcacctgctt ccaagtgtta caaatatgtg
     3361 gtatttgaat tttata
//
LOCUS       DATABJ010000246         3807 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1938281, whole genome shotgun sequence.
ACCESSION   DATABJ010000246 DATABJ010000000
VERSION     DATABJ010000246.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3807)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3807)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3807
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1938281"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(971..2044)
                     /gene="hflX"
                     /locus_tag="VHF44_03985"
     CDS             complement(971..2044)
                     /gene="hflX"
                     /locus_tag="VHF44_03985"
                     /inference="COORDINATES: protein motif:HMM:TIGR03156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005525 - GTP binding [Evidence IEA];
                     GO_process: GO:0008150 - biological_process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEX2124746.1"
                     /translation="MNVTKVILVTYPDDFRLQEGKSLVESLVVETRGLQIVKIVTQKY
                     LNHSEYGLGSGKAEEIKEFVKESNADQIIVDEHLTSKQIHNLEKLTGVQVIDRERLIL
                     NIFYSRATTTEAKLQIQLAEIKYEMPRVRESAKLTSGGERAGKGGMGEYTVDVKFRDL
                     KRQASFIKEKLKYAQRKRELYHQQRLKTRMPVVSLVGYTSSGKTTLFNLLTDQHKETS
                     HSLFTTLSTTTRSLKIGNKGVLLTDTIGFISRLPTYMIDAFKSTLEESLAADLILLLI
                     DSSEKIEDIRIKYSSCWDVLDELKVDKSKVFVIFSKFDKIHSEQIEEISKDLEISNPV
                     AISSKTGYGIRKLKTMIEDHIVN"
     gene            complement(2091..2276)
                     /locus_tag="VHF44_03990"
     CDS             complement(2091..2276)
                     /locus_tag="VHF44_03990"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124747.1"
                     /translation="MPMLMIQCKTCGEVFPGLYVDEGSNDAFKATATNANTSHTCSRG
                     HKNEYVTVDYMDWSTQE"
     gene            complement(3282..3668)
                     /locus_tag="VHF44_03995"
     CDS             complement(3282..3668)
                     /locus_tag="VHF44_03995"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124748.1"
                     /translation="MTLCERCTKHEEYHTCSTCNQHLCMSCFNTIHFGINAPRTGKSM
                     VYNKCIFCNKVYATNAKGSVCDKCTIILTWQSGMDCLAAVNRVSELVRTNKLDPKLKN
                     ENYCKTHFGIHATQVIMDAIDSLKVQ"
BASE COUNT         1174 a          678 c          569 g         1386 t
ORIGIN      
        1 cccagtgttt ttaaagcatc taacctgtta ccctttttag tagtaacaac tgaaaataaa
       61 gactgatcta aacgtgaaaa aacaaaaaaa gaatgaaggt agagttctat ttaacgacta
      121 ccagtatgtt tctttttgca aacattgtca ttaaagtcta ctttgcaatc accgtagttc
      181 ctttcgtcgt tggtcctgta tatacaatct atgaaacaaa gaagtgaaaa gtgattgctt
      241 aaattagaat cagaccctta cttcatgttc atctttgcaa tgcacggatg ccactaccac
      301 cacaaaagta gtccaagaat taaaacatgt ttgttttgtt aaagcttcta tcttctatga
      361 agctacttca actagaagaa agtaattaga aagataatcc tagcatgtca aatcctaata
      421 tcttctttca tagatgcttt atgatagcct tcacatatta tatctctgat agaaaaaggc
      481 ttatttgtta cttattaagt gtatcgtcta taagcccaaa aataaagact acgaactgag
      541 ggtttgaatt ctacaaaatg gtataatatg aatcgattaa aattctaggc ccataatatt
      601 tagataaact aattattata aataaggtat gaggtgctat ttactttact gtctttgcac
      661 acgtctcaca gtatctttct attagagtaa cgcctccacc tacattgaac aaggcttctt
      721 gagtagccat gttagcgcaa tttgcgcaaa atttagtttt gccgttatgg gtagtaaaag
      781 atcttagcga cgtaaaattt ttttccattt tcattttatt ttcacctcgt gaaattttcg
      841 acgaataaat acatcagcaa caatatcatt gttatgactg ctataacaag tatgaattgt
      901 gtgtttatta gtcatctctt agtagagacg tcgtgcctat aataacttat gtatttgttg
      961 tatgagttta ttaatttaca atatgatctt cgatcatagt ctttagttta cgtatcccat
     1021 atcctgtctt ggatgatata gctactggat ttgatatctc taaatctttt gaaatttcct
     1081 caatttgttc tgagtgtatt ttgtcaaact tgctaaaaat tacaaacact tttgatttgt
     1141 ctactttcag ttcatctaaa acatcccaac agcttgaata ctttattcta atatcttcaa
     1201 tcttctcaga cgaatctatc aatagtaaaa tcaaatcggc agcaagtgat tcttctagtg
     1261 tcgatttaaa tgcatctatc atataggtgg gaagcctgct aataaaacct attgtatctg
     1321 taagcaatac tcctttattg ccgattttca atgaccttgt tgttgtcgaa agtgttgtga
     1381 acaaactatg tgaagtttct ttatgctgat ctgtcagcag gttgaacaat gtagtttttc
     1441 ctgaactggt ataacctacc agcgagacaa caggcattct agttttcaat ctttgttgat
     1501 gataaagctc acgttttcgc tgtgcatact ttaatttttc tttgataaac gaagcttgtc
     1561 tttttagatc tcggaacttt acatcgactg tatactctcc catgccacct tttccagctc
     1621 tttcaccacc tgaagttagc tttgcgcttt ctctcactcg aggcatttca tatttaattt
     1681 cagcgagttg gatctgtagc tttgcctcag ttgtagtagc tctagaataa aatatgttaa
     1741 gtattaaccg ctctctgtct ataacttgta cacctgttag tttctccagg ttatgtatct
     1801 gttttgaagt caaatgttcg tcaacaatta tctgatctgc attggattct tttacaaatt
     1861 ccttgatttc ttcagcttta ccagaaccta aaccatattc tgagtggttt agatactttt
     1921 gtgtaactat ctttacaatt tgtaagcctc ttgtttctac tactagtgac tctactagac
     1981 tttttccttc ttgcagcctg aaatcatctg gatatgttac cagtattact ttggttacat
     2041 tcaagaaaaa gtcaatacca atctaactat atgcagttta ctgtgagata ttattcttgt
     2101 gtagaccaat ccatgtagtc tactgtaaca tattcattct tgtgtcctct tgaacatgta
     2161 tgtgaagtat tagcatttgt ggcagttgct ttgaaagcat cattacttcc ttcatcgaca
     2221 taaagtcctg gaaagacttc accgcaagtt ttacactgta tcataagcat tggcatttta
     2281 tttcttcatc ctcttcctct tcttctcctc atcttatatt aaagaatctg actattatag
     2341 gtatgttata tacacatata atcaatatgt atcaatgcat tctattaata ctggattctt
     2401 aattattgtt gcctactttc cctagaattt atttctgcag tccttgtttg taagctctcg
     2461 gcattttggg tcatgtctcc agctaccatt cataaaaaat tcaagatgtt tgttattgtc
     2521 tctatcaact ataacccttt gatgaccatt tttaggactg ccaagactaa atcttgatgg
     2581 ggaattgcta gtatttcttg tattgaatct cacagtggta tataattaaa cttacttaag
     2641 aactgtttga taagtgtaac tagtacttgt cgaggtggtg ctgtagaata ctggctaaag
     2701 ataataataa acactatgaa aaaccttaga agaaagcgaa atccattttt gtatataatt
     2761 taatgacaca acataaccca atattataat gaataaagtc tctatctgta atagttctaa
     2821 ctagccaata tctcttaatt gtatttttgt taaggaaaag aggaattttg gaaggcacat
     2881 gtgatagctg caatttaaca attcaaacaa ctttgtaaga tgtcaaactt tgttatgcaa
     2941 gctgccttat ttgttaaatg cgattacgat atcagcatac atataccaca cattatataa
     3001 tagccaagag atgagaatga tagcatgcca ccatcaagaa gggcctctaa tagagaaaat
     3061 ggacatactt gtcgccctcg ttatgttaat aatatatgac aactactata caaaactatt
     3121 ttaatttcac agttatactt tttaccatca aaatctggat ctgtcaattt gtcagcatca
     3181 tccatcatta tctttaacaa agaatttaat ataaaattaa gcctaaaggt caatcagtta
     3241 ttttagttca aaacaaatta ttattgttat tattaatatt attattgtac ttttaaactg
     3301 tctattgcat ccataattac ctgcgtagca tgtataccaa aatgtgtctt gcaatagttt
     3361 tcatttttca attttgggtc tagtttattt gttctcacta gttctgaaac tctgtttact
     3421 gcagcaagac aatccattcc cgattgccaa gtaagtataa ttgtgcattt atcacaaaca
     3481 ctaccttttg cattagttgc atatacttta ttacaaaaaa tgcatttgtt gtataccatt
     3541 gatttaccag ttcttggagc gtttatacca aaatgaatgg tattaaaaca gctcatacac
     3601 aaatgctgat tacacgttga acatgtgtga tattcttcat gtttggtaca tctttcacaa
     3661 agtgtcatag tttgcaatca ccgtgtggaa agatacagaa tcagataata agtgtgagct
     3721 gaattgttca tctatcatac tatataggat tgatgcccta tattaactgc ttgccaatat
     3781 gataataaat aatgtatgcc gtcttac
//
LOCUS       DATABJ010000247         2479 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1939301, whole genome shotgun sequence.
ACCESSION   DATABJ010000247 DATABJ010000000
VERSION     DATABJ010000247.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2479)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2479)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2479
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1939301"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..180
                     /locus_tag="VHF44_04000"
     CDS             <1..180
                     /locus_tag="VHF44_04000"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124749.1"
                     /translation="KFYYDIGVIPTPSVHSLGKFAIIKAYNEWINQQTKALQRTERRR
                     KVIRSIIGDENNKSG"
     gene            234..1124
                     /locus_tag="VHF44_04005"
     CDS             234..1124
                     /locus_tag="VHF44_04005"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012517.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX2124750.1"
                     /translation="MRLCLEVWGKDYNKIKETCLLAEKLGYYGFYYGESLTDIDLDCW
                     TVLSSLSSITNRIKLGPVITYLFPQYRNIALLAKQALTFQEISDGRLEFRTGAGATLQ
                     YATQWWHPYGIEYPKEKDRVSILEEGLQVLQMLWHKSEVHFNGNFFRLNGAILQNTGK
                     YIPVTIAAKRKKMISIAARFADIWEASYLSPEQFHKLNSDFDNISKKFNRSVLKSIEL
                     DVIIAESPADLKYKEKLFAMERGPSVYNQIVRNGLVGIPEMIADRVKEYIDAGIGQFF
                     LAFQDPFDSKALELFMDAVK"
     gene            1186..1878
                     /locus_tag="VHF44_04010"
     CDS             1186..1878
                     /locus_tag="VHF44_04010"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEX2124751.1"
                     /translation="MSPLISIGTSGYTYSWNEANPTPFKWYMNQGFNSVEINASFYRF
                     PTQSWVKTWLTAPEDFSFSIKVHRSITHYTKLKNRSLELWNRFRQPLESLEKKIDFWL
                     FQMPSNYKYKQENLEAIRAFFEKTNLRNKAVIEFRDSSWWKAAKEIANIGIVFCSVNA
                     PCLPHSLMSTNGAVYLRLHGSKEWYNYIYSEKELDNILSMIKKLKADKKMIYLNNDHG
                     MLQNGLYLLKHV"
     gene            complement(1913..>2479)
                     /locus_tag="VHF44_04015"
     CDS             complement(1913..>2479)
                     /locus_tag="VHF44_04015"
                     /inference="COORDINATES: protein motif:HMM:NF014017.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEX2124752.1"
                     /translation="EFLDKISPLKTSNKLGGILIQLPPSFTVNDFKNIEVFLARLPNS
                     GNYDYAVEFRHPSWKTEGPWEMLKQYNIAAVITDSPPKENLHFLSDVVITADHSFVRF
                     HGRNTKGHYWYNYLYTKEELIPWVEKISQIKKETKILRAYFNNHWGGKAVVNALQFKE
                     MTSNAPLSENERNALEHAKTYLRASSGL"
BASE COUNT          825 a          421 c          460 g          773 t
ORIGIN      
        1 aagttttatt atgatattgg ggttattcca acgcctagtg tccattctct gggaaaattt
       61 gctataataa aagcatacaa tgagtggata aaccagcaaa cgaaagcttt acaacgaaca
      121 gagagaagaa ggaaggttat aaggtctatt attggtgatg aaaataataa atcaggttag
      181 cttcaccgta atcacaaata gcaccaagtt tattcaaaat aaatgtgaac attatgcgtc
      241 tatgtttaga ggtatggggt aaagattaca acaaaattaa agagacctgt ctcttggctg
      301 aaaagctggg ttattatgga ttttattatg gtgaatcatt aacagatatt gaccttgatt
      361 gctggactgt attatctagc ctatcctcca tcaccaatcg aataaaatta ggtcccgtta
      421 taacatatct ctttcctcag tatagaaaca ttgcacttct ggccaaacaa gcattaacat
      481 tccaagaaat atctgatgga agattagaat ttagaactgg tgctggagca acacttcaat
      541 atgctactca atggtggcat ccttatggca tagaatatcc aaaagagaaa gatagagttt
      601 caatccttga agaaggtttg caggttcttc aaatgctatg gcataaatct gaagttcatt
      661 ttaatggaaa ctttttcaga ttaaatggtg ccatattaca aaacacaggc aagtatatcc
      721 ctgtaaccat tgcagcaaaa agaaagaaaa tgataagcat agcggccagg tttgcagata
      781 tatgggaagc atcttatctg tcgccagaac aattccacaa attaaactca gattttgata
      841 acatctctaa gaaatttaat agaagtgtat taaagtctat tgagctggat gtaattattg
      901 cagaatctcc ggctgatttg aaatataaag aaaaactatt tgctatggaa agagggccta
      961 gtgtatacaa tcagatagta agaaatggat tggtggggat cccagaaatg atagcggaca
     1021 gagttaagga atatatcgat gctggtatag gacagttttt ccttgccttt caggatcctt
     1081 ttgattccaa agctttggag ttgttcatgg atgctgtaaa atgaaggatg cttaacaaac
     1141 taattaatcc tatataatga gttcaacgcc aatagtagaa aggtcttgtc accgttaata
     1201 tcaataggga catcaggata cacatattct tggaatgaag ctaaccctac cccatttaaa
     1261 tggtacatga accagggttt taactcagtt gaaattaatg ctagtttcta tcgttttcct
     1321 acccaaagtt gggtaaagac ttggctaaca gcccctgaag acttctcttt ttccattaag
     1381 gtacatcgct caattaccca ttataccaaa ctaaagaata gatcactaga actatggaat
     1441 cgattcaggc aacctcttga atctcttgaa aagaagatcg atttctggct atttcagatg
     1501 ccatctaatt ataaatataa gcaggaaaat ctagaagcaa taagagcatt ctttgaaaaa
     1561 actaacttac gaaacaaggc tgttatagaa tttagagact catcgtggtg gaaagctgca
     1621 aaggaaattg caaatatagg catagttttt tgttccgtta acgcgccatg tcttccccat
     1681 agcttaatgt ccacaaacgg tgcagtatat cttagacttc atggttctaa agaatggtat
     1741 aattacatat actcagagaa agagcttgat aacatcctat caatgattaa aaagctgaag
     1801 gcagataaga agatgatata tcttaataat gatcacggta tgctgcagaa tggactatac
     1861 ttattaaagc atgtataaat cctcgccttt attgaggatg atatgtgttt tctcatagtc
     1921 ccgagctagc gcgcagatat gtcttagcgt gttctagtgc gtttctttca ttttctgata
     1981 atggggcatt agaagtcatc tctttaaatt gcagcgcatt aacaacagcc tttccccccc
     2041 aatggttatt aaaataggca cgcagaatct tagtttcctt ttttatttgt gagatttttt
     2101 cgacccaagg tattagttct tcttttgtat acaaatagtt ataccaataa tgtccttttg
     2161 tatttcttcc atgaaacctt acaaatgaat ggtctgctgt aataactaca tcagacagaa
     2221 aatgaagatt ctcttttggt ggtgaatctg taattactgc tgcaatattg tattgcttta
     2281 gcatttccca aggtccttca gttttccatg atggatgcct gaattcaaca gcatagtcat
     2341 aattaccact atttggtaat cgtgcaagaa atacttctat atttttgaaa tcattaactg
     2401 taaaactcgg aggaagctgg atcaatatac cacctaattt gtttgatgtc tttaacggtg
     2461 atattttgtc aaggaattc
//
LOCUS       DATABJ010000248         2023 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1940105, whole genome shotgun sequence.
ACCESSION   DATABJ010000248 DATABJ010000000
VERSION     DATABJ010000248.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2023)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2023)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2023
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1940105"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            134..517
                     /locus_tag="VHF44_04020"
     CDS             134..517
                     /locus_tag="VHF44_04020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family ribbon-helix-helix protein"
                     /protein_id="HEX2124753.1"
                     /translation="MTIVSISLNQEILSEIDKLQNVLGFSGRSEIVRAGIRNLLAEER
                     ERQNLIGLIHALLLVIHDEESDDEVSETRHDYDKLINTHLHSKIDRDRCLEIFLLRGE
                     ANEIREMTKKFQSNKKMDHTKLVVM"
     gene            complement(755..1747)
                     /locus_tag="VHF44_04025"
     CDS             complement(755..1747)
                     /locus_tag="VHF44_04025"
                     /inference="COORDINATES: protein motif:HMM:NF012515.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PfkB family carbohydrate kinase"
                     /protein_id="HEX2124754.1"
                     /translation="MSDFFIDRLIKLNSQKEFFNALADKARFGGGSIRGIPTVDVKGG
                     NAVNVAYCLASLGAKVTLFTIADDIGSAIIRQIFSKFGDRSNLQIINGKHGRTTSFEF
                     QDEMYSKVNVMVSDIGDNANFGPERIDSADDLKILNNADGVIVVNWASNFKGTQLAEH
                     VFANSPKALHFIDPADIETRKQEFLDSMTKIAYIIDVLSINENEYNSLAKVVGIDPLL
                     LDCHSQTSVRNAAKKLAEKIGISIDLHTKIGAAWSNGKETEFVHAIKVEVQTLTGAGD
                     SWDAADIIGYLAGLDAEERLIYANACASLYIRNPNAQPATMTEVSELLERIGHK"
BASE COUNT          697 a          318 c          324 g          684 t
ORIGIN      
        1 atgcaattgg cataaccaaa acaattttga catatgctga tttattgtca tcaaattgag
       61 attgtttgta ttaataagaa tataatttaa taataataaa tgtatattta tatataaata
      121 tcttaatggt atattgacaa tagtaagtat atcactcaat caagagattc tatcagagat
      181 agataaatta caaaatgttc ttggtttttc aggacgatca gaaattgttc gggcaggaat
      241 tcgaaatctg ttagcagaag aaagagaaag acagaattta ataggtctga ttcatgcttt
      301 attactggta atccatgatg aggagtctga tgatgaagtc tcagaaacaa gacatgatta
      361 tgacaaacta atcaatacac atttacacag taaaatcgat agagaccgat gtctagagat
      421 ctttcttctt aggggtgagg caaacgaaat tagagaaatg actaagaaat ttcaatctaa
      481 taaaaagatg gatcatacaa aattagttgt aatgtagaaa tctatgattt gtcattgtag
      541 acttgacata tgcaagatat gtgtggtttc aaatatatta aacacaataa atcccgctat
      601 atgacgggaa gaagagaagg caaaaagata gttctaaagt tttttatgag cgctaagaat
      661 aaataaagag attaaagggg ttctaattat agaaatgtaa atgaggatcc agagcttatt
      721 gcattacctt ttgggaaaca taagcaaaat taccttattt atgacctatt ctttctagta
      781 gttcagaaac ttcagtcatg gtagccggtt gagcattcgg attcctaatg taaagtgagg
      841 cacatgcatt tgcataaatt aatcgttctt cggcatctaa tcctgctaaa taaccaataa
      901 tatcagcagc atcccaagaa tcgccagcac cagttagagt ttgtacctca actttgattg
      961 catgtacaaa ttcagtttcc tttccattcg accacgctgc acctatctta gtatgtaagt
     1021 caatactaat tccaattttt tctgcaagtt tttttgcagc atttcttaca cttgtctggc
     1081 tatggcagtc taagagaagt ggatcaattc caactacttt tgcaagagaa ttatattcat
     1141 tttcgtttat acttagaacg tcgatgatgt aggcaatttt tgtcatcgag tctaaaaatt
     1201 cttgttttct tgtctcgata tcagcaggat ctataaaatg tagagctttt ggagaattgg
     1261 cgaatacatg ttctgccaat tgtgttcctt taaaattact agcccagtta actactatta
     1321 ctccatctgc attattcaaa atttttaggt catctgcaga atcaatccgt tcagggccaa
     1381 aatttgcatt atctccaatg tcacttacca taacatttac tttagagtac atttcatctt
     1441 gaaattcaaa cgatgtagta cgaccatgtt ttccatttat tatttgaaga tttgatctat
     1501 ctccaaattt tgagaatatt tgtcttatta tagcagagcc aatgtcatct gcaattgtaa
     1561 atagagtgac ctttgcacct agacttgcaa ggcaatatgc aacatttact gcatttcctc
     1621 cttttacatc cacagtcgga ataccgcgga tactgccacc tccaaacctt gctttatctg
     1681 ctaaagcatt aaagaactct ttttgtgagt ttaattttat tagacggtca ataaaaaaat
     1741 cagacattac aactatagga ttcatataag aatagtaact ttctatcttg tctattactg
     1801 gaggtttaaa ttgatagcac caaaaataat ataattttac attatttatc tcttgggaaa
     1861 atgagaaatt tgcttaatga aaaatttaat aaattgtaaa tatgctgatt ttcttttaat
     1921 actgaataat caataatcaa aactgatgtt aatcaatagc aggagtattt tattaaataa
     1981 tataacggca aagatatgcg atttacttaa tcttcctaga ttt
//
LOCUS       DATABJ010000249         2096 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1070411, whole genome shotgun sequence.
ACCESSION   DATABJ010000249 DATABJ010000000
VERSION     DATABJ010000249.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2096)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2096)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2096
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1070411"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            547..1161
                     /locus_tag="VHF44_04030"
     CDS             547..1161
                     /locus_tag="VHF44_04030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HEX2124755.1"
                     /translation="MSVDPVRYLCQTDFRLGEVIRSVGKYSIKTTNDPFLSLTRSIIS
                     QQLAERVANVIYGRFLGYYNNISPRPEQILLTPDNILKTKVGLSGKKIEYIKDLSARV
                     LDRKLNLALTSEMSDDEIVNQLIQVKGIGKWTAEMFLIFCLARPDVFPVGDLGVRKAI
                     QKIYTLPEVPTPSTMLAIAQPWKPYRSIATWYLWKSLSNFNSIG"
     gene            complement(1217..>2096)
                     /locus_tag="VHF44_04035"
     CDS             complement(1217..>2096)
                     /locus_tag="VHF44_04035"
                     /inference="COORDINATES: protein motif:HMM:NF013584.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016810 - hydrolase activity, acting on
                     carbon-nitrogen (but not peptide) bonds [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEX2124756.1"
                     /translation="IRVPSSLCGVVGLKPTYGRISRYGVMDLAPSLDHVGCITRSAWD
                     TAVVLQTIAGQDPFDPFTENYDVPDYRKIVSETTHEKLSIGLPNRYFFDNLQAEVKHI
                     IHTFIENIGLSDFVFETNMEKTEIISETWRSIRLAEASEIHLKWLKTKANDYAEDVRN
                     MLIEGTKIPAIDYIRAHKLRNELRSELLKILKKVDVIVVPTTIITAPRFDDLEVRNID
                     GKAIKIREALLRNTIVFNSTGIPSVSIPVGLSKDGMPVGVQIVGSPFEEEKILSMAYK
                     YECINNSLEKFVPPLH"
BASE COUNT          679 a          351 c          350 g          716 t
ORIGIN      
        1 attaaagaat atatatttat atttagaata ataataagag aatatattta gtcatacgat
       61 tgtaatcata tatatttcaa tgccgatcat taagagaatg gcaatgtgat ctattgtgaa
      121 aatcctctcc aagagactaa agaataagta aaggagtata cagaaacttg acaatatgag
      181 aggctagtga gattgaatat tgattagaat aaaaaagaat tattcaagct tagtcgttct
      241 ttactataaa taggaacatt cttttagtat cgatattgag acgaggatct gcattccaca
      301 tcggtggata agctattata tttttgttcc tttaggaggc ttagttatgt gctattgcag
      361 ttatatatcc aatagagata ttgtattctt cttttctggt attgataata atttagagtc
      421 atcttctcgg tttttcttat gatcatacaa ttacctttca attgtcatat gtccaaagtt
      481 atattaatcc cttctttttc tcagcaatat taaagtatct ttattgcaaa ctcatctata
      541 gttgatatga gcgtagatcc tgttcgctat ctatgccaaa ccgattttcg attaggggaa
      601 gtaattaggt ctgttggaaa gtattcaatt aaaaccacaa atgatccgtt cctttcacta
      661 accagatcta taatctccca acaacttgcc gaaagagttg ctaatgttat atatggacga
      721 tttctaggat attacaataa tatttcccct agacctgagc aaattctatt gactccagat
      781 aatatactga aaaccaaagt cggattatct ggtaaaaaga tagaatacat aaaagatctt
      841 tctgcaagag tgttagatag aaaattaaac ttagcgttga catcagaaat gagtgatgat
      901 gaaattgtta atcaattgat acaagtaaaa ggaattggta aatggacggc agaaatgttt
      961 ttgatatttt gtctagcaag accagatgtc tttcctgtag gtgatttagg tgtcagaaag
     1021 gctatccaga aaatatatac cttgccggaa gttcctactc cttctacaat gttggctata
     1081 gctcaaccgt ggaagcctta cagaagcata gctacatggt atctatggaa atcgctctct
     1141 aacttcaatt cgattggata aacaatggaa gaaaagctca cttagataca tgttgtttaa
     1201 ccaagcgctt ctgcattcag tgtaaaggag ggacaaattt ttcgaggcta ttattgatgc
     1261 attcatattt gtatgccatt gaaagaattt tttcctcctc aaagggagaa cctacgatct
     1321 gtactcctac aggcattcca tctttagaca atcctacagg aatactaacg gatggtatac
     1381 ctgtactatt aaaaacgata gtgtttctca ataaagcttc tcgtattttt atagctttgc
     1441 catcaatatt tctaacttct agatcatcaa atctaggagc ggtaataata gtggtcggca
     1501 caacaatgac atcaactttt tttagtattt ttagaagttc agatcttaat tcatttctta
     1561 atttatgggc acgaatataa tcaatagcag gtattttagt accttcaatt agcatatttc
     1621 ttacatcttc agcgtaatca ttggcttttg ttttaagcca ttttaagtgt atttctgatg
     1681 cttctgcaag tcttatgctc ctccatgttt cagagataat ttctgtcttt tccatgtttg
     1741 tctcaaaaac aaaatccgat aatcctatat tttcaatgaa agtatggata atatgcttta
     1801 cttctgcttg aagattatcg aaaaagtatc tatttggtaa tccaatagac aatttctcgt
     1861 gtgtagtttc tgaaacaatt tttctatagt caggaacatc gtaattttct gtaaatgggt
     1921 cgaacggatc ttggcctgca atagtctgta atacaacagc agtatcccag gcacttctag
     1981 ttatgcatcc tacatgatct agcgaaggag ctagatccat aactccatat ctactgatcc
     2041 ttccatatgt aggttttaaa cctacaacac cacacagtga agatggaact ctaata
//
LOCUS       DATABJ010000250         3121 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1699087, whole genome shotgun sequence.
ACCESSION   DATABJ010000250 DATABJ010000000
VERSION     DATABJ010000250.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3121)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3121)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3121
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1699087"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            143..2047
                     /locus_tag="VHF44_04040"
     CDS             143..2047
                     /locus_tag="VHF44_04040"
                     /inference="COORDINATES: protein motif:HMM:NF017442.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF790 family protein"
                     /protein_id="HEX2124757.1"
                     /translation="MLPLQLLRTRITDKGTNIAPRFCTADDSVLHLASKIIKEFEESW
                     KNKEKKSFLTERIALIESEYNDYKLARGFYTLLERRCIFTRIKEIKTESKDIASNVYV
                     NNDNLHDPVNIRKELFEESSKRGFALTEFGRREIIDTVASKINVPSNDIVDVMWSDLE
                     ENLVLEWFDAISPEQLLAWYNLSLMQTLLFNCTKLEFSVTGGSNWKRILRDIKRLGLM
                     YNLQYIALEDEKQSTHVDEIDYDNRDIKFINTNNTDTKNNPIIICSLDGPLSIFKLTD
                     RYGTSIAKILPSIISSDTWSLKAWIVRKTMSLGKKIYEFKISNTDAPPLSREPYYNKE
                     NDKERKRTLYTTKESSQLNYFDSGVEEKFSTRFEQSATGWKLIREPDPLILSNGKALI
                     PDFAFEKYGTRIYLEIVGFWTKEYLEKKIQKIADLTKDIRTGNNAVDFFIAVNDAGYA
                     SSNTNIKEKLAWEKIISSISKERLIFYKNDKVPVKPFLDYLKSIDVKMIETLANNNSV
                     KLLTEIENYAFNNTAIISIDELADKYNLPIESALRIITTSHKNDKSSSISNPNDKYVV
                     AGTYLISKSKLSELESLFDGITKFTDACSILEQNNIPESCHMEIISKIGYDVLWQSMD
                     CSTAIIKRRI"
     gene            complement(2178..2993)
                     /locus_tag="VHF44_04045"
     CDS             complement(2178..2993)
                     /locus_tag="VHF44_04045"
                     /inference="COORDINATES: protein motif:HMM:TIGR01486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA];
                     GO_process: GO:0008152 - metabolic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="HAD-IIB family hydrolase"
                     /protein_id="HEX2124758.1"
                     /translation="MTYKVIFTDIDGTLIDINTGEYQGTIKLVCILKNNNIPVILCSA
                     KTWSEQNKIREDIGLNEPFIVENGGALIIPKDYFNFSFNTLISKVKQEYIIIELGKPA
                     VEIRKKLREIRKKYKIDFLGVSDVTLNELAKMTGLSKDYARRMAQREYGETIIKIEKN
                     DLEKFIKIANDMGLKLIQGGRYFDITVGNDKGKAVDILMNLFRKKYHNDVKFFGVGDS
                     ENDVSMLNRMDLPMLVQRPDNSWSNLEVKDIVKIQGIGPEGWKGAFNRIMELD"
BASE COUNT         1116 a          513 c          506 g          986 t
ORIGIN      
        1 atcaaagcat acaattgata tagcatcatc ataatcatct ctctccctat caatatcgaa
       61 atgaatccta caaaatatat ccatatacga aagaaggaag aaagaaagaa agaaacagga
      121 atgagtgaag gctaaatacg atatgctgcc gcttcaatta cttagaacaa gaataacaga
      181 caagggaaca aacattgctc cacgattttg tacagctgat gatagcgttt tgcatttagc
      241 ttcaaagatc attaaagaat ttgaagaatc atggaaaaat aaagagaaga agtcgtttct
      301 taccgaaaga attgctctta ttgaatccga gtataatgac tataagctcg caaggggatt
      361 ttatactctt cttgagagaa gatgcatctt taccagaata aaggaaataa aaacagagtc
      421 aaaagacatc gccagtaatg tttacgttaa caacgataat cttcatgacc cagtcaatat
      481 cagaaaggaa ttatttgaag aatcatcaaa gagaggtttt gcattgacag aatttggaag
      541 aagagaaata attgacaccg ttgcatctaa aataaacgta ccttctaacg atatagtaga
      601 tgtcatgtgg agcgatctag aagagaactt ggtattagaa tggttcgatg caataagccc
      661 agaacaacta ttggcttggt ataatttgtc attaatgcaa acattactat ttaattgtac
      721 aaaactagaa ttctctgtca ctggaggctc aaattggaag cgtatattac gtgatattaa
      781 aagacttggg ctaatgtata atttacaata tatagcatta gaggatgaaa aacaatcaac
      841 ccatgtagat gagatagatt atgataatag agacatcaag ttcataaata caaataacac
      901 agatacaaag aacaatccaa tcatcatctg ctctctagat ggtcctttga gtattttcaa
      961 attaactgac agatacggaa catcaatcgc aaaaatactt ccatcgatta tttctagtga
     1021 tacatggtcc ctaaaggcct ggattgtgag gaagactatg tctttgggaa agaaaatata
     1081 tgaatttaaa atatcaaata ccgatgctcc tcctttatca cgtgaaccat actataataa
     1141 agaaaatgat aaagagagaa agagaacctt atatactact aaagaatctt cgcaacttaa
     1201 ttactttgat agcggagtag aggaaaagtt ctctaccaga tttgagcaat ctgccactgg
     1261 ttggaagtta ataagggagc ctgatccatt aattctatca aatggcaagg cacttattcc
     1321 tgactttgca tttgaaaaat acggtacgag aatatatctt gagatcgtag gattctggac
     1381 caaagaatat ctagagaaaa aaatacaaaa aatagccgat cttacaaaag atatacggac
     1441 tggtaataat gcagtagact tctttatagc tgtaaatgat gcaggttatg catcctctaa
     1501 tactaatatt aaggaaaaac ttgcgtggga gaagataatt tcttctatat caaaggaacg
     1561 attgatcttt tataagaacg ataaagttcc agtcaagcct tttcttgact acttgaaatc
     1621 tattgacgta aagatgattg aaacgcttgc taacaacaat tcagtaaagt tattgactga
     1681 aatcgaaaac tatgctttca ataatactgc tatcatctcc attgacgaat tagcagataa
     1741 atacaatttg ccaattgaat ctgccttaag aattattact acatcacata aaaacgataa
     1801 gagtagtagt atcagtaatc ctaacgacaa atatgttgta gcaggtacat atttgatatc
     1861 aaagtctaag ttaagtgaac ttgagtctct atttgatgga ataactaaat ttacagatgc
     1921 ttgttcaatc cttgagcaga acaatatacc agaatcttgt catatggaaa ttatttctaa
     1981 gattggatat gatgttctat ggcagagtat ggattgcagc actgcaatta tcaaaaggcg
     2041 catataataa gaaattttct agttttgcaa tatgaaaaat taagtgtaca ttgaaggatt
     2101 ctaagatgaa ctcaaatgac tgctagaatt actgacagat gatgtgtggt tatagatata
     2161 gcacatatca tcagcatcta atctaactcc ataattctat tgaaggcacc cttccaacct
     2221 tctggaccta taccttgaat ctttacaatg tctttaactt caaggtttga ccacgaatta
     2281 tctggccttt gaactagcat tggaagatcc atacgattca gcatagaaac atcattttca
     2341 ctgtcaccca caccaaaaaa ttttacgtca ttatgatatt tttttctaaa gagattcatc
     2401 aatatatcta ctgctttgcc tttatcattg ccgactgtta tatcaaaata tcgtccaccc
     2461 tgaattagct ttagacccat gtcattggca atttttataa atttctctaa atcatttttt
     2521 tcaattttta taatagtttc gccatattct cgctgagcca ttcttcgtgc ataatccttt
     2581 gacaaacctg tcattttggc aagttcattc aaagtaacat ctgaaactcc taagaagtct
     2641 attttgtatt tttttctgat ctctctgagt ttttttctga tctcaacggc aggttttcca
     2701 agttctatta tgatatactc ttgttttact ttagagatca gtgtattaaa agagaaattg
     2761 aaataatctt taggaatgat taatgctcca ccattttcta ctataaacgg ttcatttaat
     2821 cctatatctt ctcttatctt attttgttcg gaccaagtct tggcagaaca aagaattact
     2881 ggaatattat tgttttttaa gatgcaaacc aattttattg ttccttgata ttcgcctgtg
     2941 tttatatcaa ttaaagtacc atctatatcg gtgaagatca ctttatacgt catatctaca
     3001 taaggtgggt agtacgaatt tgttaattta tcgatatgaa tcagataaaa tactttggaa
     3061 tcaaaataag agcatcatat catcgtatta acaaaatatt tgagactatt ttatcagtca
     3121 t
//
LOCUS       DATABJ010000251         2209 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1699228, whole genome shotgun sequence.
ACCESSION   DATABJ010000251 DATABJ010000000
VERSION     DATABJ010000251.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2209)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2209)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2209
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1699228"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            595..1323
                     /locus_tag="VHF44_04050"
     CDS             595..1323
                     /locus_tag="VHF44_04050"
                     /inference="COORDINATES: protein motif:HMM:NF013866.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2124759.1"
                     /translation="MMPEDKQLHYHHDIVRISPTDEQQNIIEGDLTIPNTTIDAKGIV
                     IFAHGSGSSRHSPRNQYVAQVLNNAGIATLLVDLLTKEEEKIDDVTREHRFNISLLAR
                     RLLASTDWISQYPKIRNLNIGYFGASTGAAAALVAASERPNVISAIVSRGGRPDLAGQ
                     QVLNRIQAPTLLIVGENDKQVIHLNENALEQLSRLEKKKKIVIIPGATHLFEEPGTLE
                     EVARRASGWFECFFLENRKDVGSH"
     gene            1445..1723
                     /locus_tag="VHF44_04055"
     CDS             1445..1723
                     /locus_tag="VHF44_04055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124760.1"
                     /translation="MEKTYNNSSCDARIHAYKNGKTMEQCKEDARKNTEVLSYEILKK
                     GEVSWARILEITDYDELVYKLTLKYLRQKGYDIGNNKIPRVKANTIIS"
BASE COUNT          803 a          315 c          397 g          694 t
ORIGIN      
        1 taaacagata tgacttattt tacaactcaa acaatggttg taatcttaat gttacattgc
       61 atatttttaa tatatattag catagagtac acaaataatt tacaaataag ttaaggcatt
      121 gttaataatg caaagctcaa tatcagctct atgataatgg caaataacaa cttacataac
      181 tatcaaatct gttaatattg aaatagaatt cactatgata gtgcatcaaa gacagtaaaa
      241 ttaaaaaatt agcacagaat ggatttacaa tggattagta ttcaaagaat tgtggaatga
      301 tttgtaatac atacaggaag tcgatccttc tacaaggcag atattattat caaatcatca
      361 tctatcaata gttttaggtt ttattggagt aactttaaga aggcaatctg aaagaagttc
      421 agacattaat tcaaagtcta caatttattt gaatgtggga atgtatagga gtttagctat
      481 tgtgagttac taagaaaact atcttagaag acaagataat aagatataaa ccttaaacaa
      541 agtaatgtat ctaggtaact cataaattta ccgataacaa gaaagatatg ataaatgatg
      601 cctgaggaca agcaactaca ttatcatcac gatattgtca ggatatctcc taccgatgag
      661 cagcagaata ttattgaagg tgacctgact atacctaaca ctactattga tgctaaagga
      721 attgttatat ttgctcatgg aagtggaagc agcagacata gtccaagaaa ccaatatgtc
      781 gctcaagtat taaataatgc aggtattgct accttattag ttgacctact tacaaaagaa
      841 gaggaaaaga tagatgatgt caccagagag catagattca atattagtct gcttgctaga
      901 cgactcctgg cttccactga ttggatttcc caatatccta aaattcgaaa tttgaacatt
      961 ggctattttg gtgcaagtac aggtgctgca gcagcattag tcgcagcttc agaacgtcca
     1021 aacgttatca gtgcaattgt atcacgtgga ggtagaccag atttggctgg tcaacaagtt
     1081 ctaaatcgca ttcaagctcc aactcttttg attgtaggag aaaatgataa acaagtaatt
     1141 catttaaatg aaaatgcatt ggagcaactt agtagactag aaaaaaagaa gaagattgta
     1201 ataatcccag gagcaacgca cctttttgag gagccaggta cacttgaaga agttgcaaga
     1261 cgtgccagtg gctggtttga atgcttcttt ctagagaata gaaaagatgt aggcagtcac
     1321 taaccataac aatccaactt ttttcttctt tttgtttatt ttagtcttct tttaatgaca
     1381 tttgtgggat attataaaca tgtcatgatt attattactc attactttta gtttctattg
     1441 taatatggag aaaacttata ataatagtag ctgcgatgct cgtattcatg cttataaaaa
     1501 tggcaaaacc atggagcaat gtaaagaaga tgccagaaaa aacacagaag tactctcata
     1561 tgaaatttta aagaaaggtg aggtttcgtg ggcaagaata ttagaaataa cagattatga
     1621 tgaattagtt tacaaattaa cattaaaata tcttcgacaa aaaggatatg acataggcaa
     1681 taataaaatt ccaagagtca aagccaacac catcatttcc tgatgtttgg agattgcaaa
     1741 taattgatta tgaagttgaa ctgttgtaat gttataacat acagtacact cataccacta
     1801 tatgagaaag aaggaggaat ggcgtatttg ggatattgta acttctttgt atatgtgtct
     1861 tgattacttt tttgttagat attttatgtt agagagcgat gatactgttt atgcttctct
     1921 gtaatatatt tagggttcaa agttgatgag cgttgatctt cattaaatta ccaaaggcta
     1981 cttcattaac ttagcaacag ctatgctttt ttctataatg gtctaggagc atatatgtat
     2041 gtctgtctct atatcttgta taagcatgat atttcatatt tacgacgaca cagacatcct
     2101 ataacgattt attgtgtgga ataagaatag taattggtcg ttatcaaaag aaatagatat
     2161 agatttagaa gctcttgaaa gcaaagggaa agaaatacaa tgatatagg
//
LOCUS       DATABJ010000252         3535 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1071983, whole genome shotgun sequence.
ACCESSION   DATABJ010000252 DATABJ010000000
VERSION     DATABJ010000252.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3535)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3535)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3535
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1071983"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(197..958)
                     /locus_tag="VHF44_04060"
     CDS             complement(197..958)
                     /locus_tag="VHF44_04060"
                     /inference="COORDINATES: protein motif:HMM:NF017758.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF892 family protein"
                     /protein_id="HEX2124761.1"
                     /translation="MTHHLNDKFVFYLNIALAAENSALERLQSRIQQTILEDAKQQLQ
                     HHLEETMEQQDRLRQIITKLGGTPTQEKAKLPIASPPESIVKTMENTMMTSAAERELK
                     ESIQDTIIENAEVTGYTMLIQMAVKMNVADAIPSLRQNLNEEEEMFGWLRANAPAMFA
                     KLWPQIEGESSSLNLESSSSSSSPTPAKMQEQQQKEEDEKFKGGSTTRHGGHLTVTTE
                     AVSDRANITEDTIAEERKDQKRHKTTRKRGKANNF"
     gene            1124..1603
                     /locus_tag="VHF44_04065"
     CDS             1124..1603
                     /locus_tag="VHF44_04065"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124762.1"
                     /translation="MVDNKSKDESSAIGSSNATHVFDTVKENFVRAVDEMAKVQPQYS
                     QAFSNLQLDFIQTTKNMIQNTISSQKQFIGSWNIPVSTPYTEQFTRQTNEITNNTLRA
                     VGINNQLAINALDLARENLRIYNRTVDAVTEFGTNIAKTCTAFSAAAQQQQQQFAKQ"
     gene            2209..2889
                     /locus_tag="VHF44_04070"
     CDS             2209..2889
                     /locus_tag="VHF44_04070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEX2124763.1"
                     /translation="MQLTKKLEIQSKKKIIEFLHNQPVGRIASIDINGYPQVIPMNFV
                     FVQADDPYTNSQSIIKSDAVYMHSHPFGEKLDNIKRNKKVGFEVDQHICFLPSYYFHP
                     SDASQADTLYISVVIKGNASIVEDNKEKASALNALMKKYQKEGRYQTLDPYMSSVNEV
                     TVIKIVPKEMHGKYKIGQHWASAYRLKIAGNIIEREGKDQAKAILDIMRVEIMPNGSL
                     NVKEEPLM"
     gene            complement(2952..3383)
                     /locus_tag="VHF44_04075"
     CDS             complement(2952..3383)
                     /locus_tag="VHF44_04075"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124764.1"
                     /translation="MLAASAKPPTAEEIKKITITDIAIMSGLADSLRDNLKKHIEIDP
                     YTTRDPFDEKDDYNYFVVLDREQPNRFVSMIVAKKDPSPQPPWDKILNERLIKLPISK
                     EDAVALKNELMPKETNNFYPYRDSGKVVGYIMFAFQICGQH"
BASE COUNT         1131 a          613 c          562 g         1229 t
ORIGIN      
        1 attaaaaaaa tggaatatga catataaaga caaaagaacc acacgatagt ggatcattat
       61 tatatccata caatattttg caattggttt aattaacatc aaaagtagac gtacgcgggt
      121 gaaatcagtg acaatgtcga tattaaagtg gaaattttaa ctattagtaa taaaaatggt
      181 tcgatttaaa gactcctcaa aaattattgg cctttcccct ttttctggta gtcttgtgtc
      241 ttttttgatc ctttctttcc tctgctatag tgtcttctgt aatattggct ctatctgata
      301 cagcttcagt tgtgactgtt aaatgccctc catgtcttgt tgtacttccg cctttgaact
      361 tttcgtcttc ttctttttgt tgttgttctt gcatttttgc tggtgtcggt gatgaagacg
      421 acgacgatga ttctaagttg agtgacgaag attccccttc aatctgtggc catagttttg
      481 caaacatggc aggtgcatta gctctaagcc atccaaacat ttcctcttct tcattaagat
      541 tctgtcttag agaaggtatt gcatcagcca cgttcatttt tactgccatt tgtataagca
      601 tagtgtatcc tgttacttct gcattttcta ttattgtatc ttgtattgat tcctttagtt
      661 cacgttctgc agcagaagtc atcattgtat tttccattgt ttttacaatt gattcaggtg
      721 gagatgctat tggtagttta gccttttctt gtgttggtgt tccacctaat ttagtaatta
      781 tctgtcgtag tctatcttgc tgctccattg tctcttctaa atgatgttgt agttgctgct
      841 ttgcatcttc caaaattgtt tgttgtattc ttgactgcaa tctttctaat gctgaatttt
      901 cagctgctaa tgcaatattt aagtagaaaa caaatttgtc atttaaatga tgagtcatta
      961 ttattgcctc tgtttatatg acaatcatca tttgctttat ggattatcat gacaatatat
     1021 ataattaaaa tagactgtga tatttaaggg ctttctatgg taatcattac cattggttac
     1081 cagagtttat atactcatat gtaatagtat taatgtataa aaattggtag ataataaatc
     1141 aaaagatgaa agcagcgcta taggatcaag taatgcaact catgtatttg acacagtaaa
     1201 ggaaaatttt gtcagagcag tagatgagat ggcaaaagtt caaccgcaat attcacaagc
     1261 attctctaac cttcagctag atttcatcca aacaacaaag aacatgattc agaacacaat
     1321 ttcatctcaa aagcaattca taggaagctg gaacatccca gtatcaacac catacacaga
     1381 gcaatttacg agacaaacaa acgaaattac caacaacaca ctaagagcag ttggcatcaa
     1441 caatcagcta gcaatcaatg cattagacct tgcaagagag aacctgagaa tctataatcg
     1501 aacagtcgat gcagtaacag aatttggcac taatatcgca aagacctgta cagccttctc
     1561 tgctgcagct caacaacaac agcaacagtt cgccaagcag taaaaaacca acttacttct
     1621 ttttttaatt tctttatagt atattttcag tgtttaatgt attttcatag tttaatctag
     1681 ttcttaccct tctgcagatc ttttttctct tatactagta aaacttcatc attagcagcc
     1741 gttattacat ttggtaggat gtaagacaaa tttgacacta ttttaccact cagaatctat
     1801 acatattgaa tgagctaata ttaaaatttg tagatgttat tggttatatt attatacact
     1861 ttaaatgcat atcaatacta gatatatata tatatatatg tatatacata aattcagtaa
     1921 cttcccttta aatagtttcc agtttgaaaa tcccatagac acctttacgt gccacaaaaa
     1981 atgctgataa gagtattttg ttgtcagaca aaatgacttt aacatttttt ttgacgatct
     2041 gctatagctt tgaatatcca tcatcatcat caccattcaa atatttgcaa tcaacttttg
     2101 tattcagtcc ttttgaacag taagctcttg tacttgttga tgtttctcct gtagtacttt
     2161 tgtatactaa caagttaaat tatgttgttt ttataaaaag gtcagtaaat gcagcttacc
     2221 aagaagcttg aaatacagtc taagaagaaa atcattgaat ttcttcataa ccaacctgtt
     2281 ggtaggatag catcaataga tatcaatgga tacccacagg tcatacctat gaatttcgtt
     2341 tttgtgcaag cagatgatcc atacactaat tcacaatcta taataaaatc agatgccgtt
     2401 tatatgcatt cccacccttt tggtgaaaaa cttgacaaca ttaaacgaaa taaaaaagta
     2461 ggattcgaag ttgatcagca tatatgcttt ttaccatcgt actatttcca tcctagtgat
     2521 gcatcacaag cagatactct ttatataagc gtagtcatta agggaaacgc ttcgattgtt
     2581 gaagataaca aagagaaagc cagtgcacta aatgccttaa tgaaaaagta tcagaaggaa
     2641 ggaagatatc aaacacttga tccatacatg tcatcagtca atgaagtcac cgtaattaaa
     2701 atagttccaa aagaaatgca tggcaaatat aagataggtc agcattgggc atctgcttac
     2761 agattgaaaa tagcaggaaa catcattgaa agagaaggaa aagaccaagc aaaagcaatt
     2821 cttgatatta tgcgagtaga gattatgcca aatggtagct taaatgtaaa agaagaacca
     2881 ttgatgtgac tttcttattt ttaattcaat tttaatttcc ttctgaatac cgtgcttttt
     2941 ctaacaaatt attagtgctg tccacagatc tggaatgcaa acatgatata accaacaacc
     3001 ttaccagaat ctctatatgg ataaaaatta tttgtctctt ttggcattaa ctcattcttc
     3061 aatgctacag catcttcttt agatattggt agtttaatca gacgttcatt caatattttg
     3121 tcccatggtg gctggggaga tggatctttc tttgcaacaa tcattgaaac gaatctgttt
     3181 ggttgctctc tatcaagtac tacaaaatag ttataatcgt ctttttcatc aaatgggtca
     3241 cgcgtagtat aggggtcaat ttcaatatgc tttttgagat tatctctaag cgaatcggct
     3301 agaccgctca ttatagcaat atcagttata gttattttct taatttcttc agctgttggc
     3361 ggttttgcag atgctgctaa catgtatttc tttaacaatc atcacaatat aacttgtact
     3421 ctttattgtg aatatataat tatatttgtt ttccagtaga tataatgtta taaagttgat
     3481 gggatctata atattgctga ggctcaaatt attttaccga taatagctct gcctt
//
LOCUS       DATABJ010000253         4770 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_848678, whole genome shotgun sequence.
ACCESSION   DATABJ010000253 DATABJ010000000
VERSION     DATABJ010000253.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4770)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4770)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4770
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_848678"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(521..1477)
                     /locus_tag="VHF44_04080"
     CDS             complement(521..1477)
                     /locus_tag="VHF44_04080"
                     /inference="COORDINATES: protein motif:HMM:NF014763.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cache domain-containing protein"
                     /protein_id="HEX2124765.1"
                     /translation="MNKLKMVLKKSLIFSCLLAIIVFSFSFLPLNDHTDFSNISQKAI
                     AQGSSLDNLGVQNQTKEKMTITDRSLVVKLLAESLESRINKSAVVLEVTSKLPQIRSV
                     SYATFISPELHGISNDLDIPKRKVAQDILTADPNFEVIFFLMPNGDMYMEEPYSNQQN
                     LTRNNFAFRDYYIGAVNTNNTFLGNVIISASSGRPQAYIAIPVYSENNGTLIGVWSGG
                     LNLTLFGESLQSLNLTNGGQRVVYIDQQGQKIADSDKQSLLSNRNQNESFANLQSFKN
                     AVKGESSFSIETINGNRMLIFYTPMKFHSTTWAVLFMQHYIR"
     gene            complement(1924..2418)
                     /locus_tag="VHF44_04085"
     CDS             complement(1924..2418)
                     /locus_tag="VHF44_04085"
                     /inference="COORDINATES: protein motif:HMM:NF012791.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0032559 - adenyl ribonucleotide binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEX2124766.1"
                     /translation="MIQTKKRKFSRILVATDGSETSLRAAEYAIEIASEKKEENNACL
                     LIAIHVLPSQVGYAYSSDIYGLATSTSISEFLESIKKEAEKWFNKIKQKADDINKDIK
                     LKTEVVATDSSVVGAIVEYAEHENIDLIIIGTRGRSGFKKMLLGSVASGVVTYAHCPV
                     MVVK"
     gene            complement(3152..3706)
                     /locus_tag="VHF44_04090"
     CDS             complement(3152..3706)
                     /locus_tag="VHF44_04090"
                     /inference="COORDINATES: protein motif:HMM:NF013936.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemerythrin domain-containing protein"
                     /protein_id="HEX2124767.1"
                     /translation="MNATQDLKQDHITIRRLRDIVQICSDRLYANENIPIEDIKIISV
                     IIEEFVDRFHHGKEEQAYFPQTKDKDSFSEDVRKFLIEHELGRRIAKMLLRQLQAWSK
                     GIGYREPIARFLKSYAVFITDHTYKEDRFFDLIENKKSISNEEDKSLIRHYESCRNQA
                     GGKARMDQMIKLIEYLEEREWMHR"
     gene            complement(4076..4234)
                     /locus_tag="VHF44_04095"
     CDS             complement(4076..4234)
                     /locus_tag="VHF44_04095"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124768.1"
                     /translation="MVEEDSYNSRKSDSGVARISSNFQCFICGAIFTTQEDRKQHLQK
                     EELGKLHG"
     gene            4573..>4770
                     /locus_tag="VHF44_04100"
     CDS             4573..>4770
                     /locus_tag="VHF44_04100"
                     /inference="COORDINATES: protein motif:HMM:NF012753.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030234 - enzyme regulator activity
                     [Evidence IEA];
                     GO_process: GO:0006808 - regulation of nitrogen
                     utilization [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEX2124769.1"
                     /translation="MKRMEIIIPNRRLHDVSEILKDANTGGMSCYRIEGRGKVKAEAV
                     SVGRGTMRYKPEFIPRTKVEVV"
BASE COUNT         1514 a          808 c          770 g         1678 t
ORIGIN      
        1 cactgtaagc cctattatga gacttgtgta tttctccttt cttctgtatt actctattat
       61 gcagtatttc tgtagcgatc ttaatggtag tgttgttgat gctgccgctg ctggtgattc
      121 attcgagttc acaaacatgc cgtcatttat tatgcaaaat aagatttgag gcaccaatga
      181 gagactggga gagaggaaga tatcaaatat gctgaagtta ttttatagta atatatggta
      241 cggtagatat tctctgctca taagccttta gtatataacc acactatttc acctatgcac
      301 tacattggtt ttggatttag taaatccata tgctcctcct ttatcgatct agttttgtat
      361 agaaggaaca tttaagaaaa tagtagccta aatgcaagtt caagactcaa tacatgagtt
      421 gcagtggtac caggattagc gtttgatact tgtcgtgcaa tatgtttatt attatttatc
      481 tgataccgac gctattctgc tgtggtggtg gtggttgttg ttatctaata taatgctgca
      541 taaaaagaac agcccaagta gtcgaatgga acttcattgg agtatagaag ataagcattc
      601 tattaccatt aattgtttct atactaaaac tcgattctcc ttttactgca ttcttgaagc
      661 tttgcagatt agcaaatgat tcattctgat ttctattaga taataatgat tgtttatctg
      721 aatcagcaat tttttgtcct tgctgatcta tgtaaacgac acgttggcca ccatttgtta
      781 ggttcagtga ttgtaatgat tcaccaaaaa gtgttagatt caagccacca gaccaaactc
      841 ctatcaatgt tccattattt tccgaataga ccggaattgc tatataagcc tgaggacggc
      901 cagaagatgc agatataatt acattaccca gaaaagtatt gttagtatta acagctccaa
      961 tataataatc tctaaaagcg aaattgtttc ttgttagatt ctgttggtta gaatatggct
     1021 cctccatata catatcaccg tttggcataa gaaagaaaat tacttcaaaa ttcggatctg
     1081 cagtcaatat atcttgtgct acttttcttt ttggaatatc aagatcattg gatattccat
     1141 gcaactcagg acttatgaag gtggcataag acacagatct tatctgtggc agtttgcttg
     1201 ttacttctaa aactacagct gatttattga ttctggattc taaactttca gctaaaagtt
     1261 ttactactaa acttctatct gttatcgtca ttttttcttt tgtttgattt tggactccta
     1321 gattatccaa agagcttcct tgggctattg ccttttgaga tatattagaa aagtcagtat
     1381 gatcatttaa tggcagaaag gaaaatgaaa agacgatgat agctaataaa catgagaaaa
     1441 tcagtgattt ttttaatacc attttgagtt tattcattga ataaaaataa taaaattatg
     1501 ccgagggatt agttttgaca agactgtcaa taagaacata tcaacaacga gtatgaataa
     1561 ttagtttaga gtcatcataa ctcattttct atgtcgtgca ccgattacag agtaaataca
     1621 gatgataaga taaagatttg attaaaaaac atagggtcaa agagtaatta tatggcgaac
     1681 aatactatcg cccagaactg tcagtataga tagaattgta gtagattcaa tagaaaaatg
     1741 caggatgtgc caatatatgt aactggaatt atcaataaat cttttgcaca gtggcgtagt
     1801 agaatatttt gattataatt gactagtgtg gtacgatcac gcacttccta cagaaaatac
     1861 gacatagaca gagcaagaca tagttaaaat attttttact gctaaatcat caatatcatc
     1921 tcattacttt actaccatta caggacaatg tgcataagtc accactccag aagcaacact
     1981 tccaagtagc atctttttaa aacctgatct tcctcgagta cctattataa tcaaatctat
     2041 attttcatgt tcagcatatt caactatcgc gcctacaaca gaactatcag ttgcaacaac
     2101 ttcagttttg agtttaatat ccttatttat atcatcagct ttttgtttaa tcttgttaaa
     2161 ccacttctca gcttctttct tgatactttc taggaattca cttattgaag tagaagtagc
     2221 caatccgtaa atgtcagatg agtacgcata tcctacctgt gaaggcaaaa catgaatagc
     2281 aattagcaaa caagcattat tttcttcttt tttttctgat gctatttcta tcgcatattc
     2341 tgctgctctc agagacgttt ccgaaccatc tgttgctaca agtattctcg aaaattttct
     2401 tttcttcgtt tgtatcaatt tataaataca ttattcatct aaatttaaat taattcatca
     2461 tttatgaatt agttggatct agagaaggac tgcggctgga agctagagaa caagcaaaat
     2521 acttgttgaa aataacatct cattaattgt tatctatcta taggtataaa tgtatataat
     2581 tatataattt gtgaatatta ttctctttat tgcgcctaat aatccataaa gaagacttta
     2641 agaatttatt aataaacgga tgttttctcc tataatgccg aatcactaag tttcttttgt
     2701 ttcaatatac tatgcttcag caacggcata aaaaatatct gacatcatga tctgaaccta
     2761 acctatgaca tttagtatat tgtctataat tggctttgct aatgaatttg atacaagtac
     2821 ttcgatctat attcaagagc tgaattctgg gatgtatctc ataatagccc tgccaaatga
     2881 tacttggttc tcattctgag atacctctgc ccttgacatc ataaaatttc acaccaccta
     2941 ctcattctta tgaagaatac cttatcttct tgaaggcgtt cataggaatt actatatcta
     3001 atcttttcaa agctatattt ttttaggaca ccggggagag agaataataa atccgtagaa
     3061 taatatgcat tacacatgct actttacata tatattatat gaaatacagt cgagatattg
     3121 aagagaatat taagatatgt tccttacatt cttatctatg catccactct ctttcttcta
     3181 aatattcaat taattttatc atttgatcca ttcttgcttt ccctcctgct tggtttctac
     3241 aactttcata atgtctgatt aaacttttat cttcttcatt cgatatactt tttttatttt
     3301 cgatcaagtc aaagaatcta tcctccttat atgtgtggtc tgttatgaaa acagcatatg
     3361 attttaagaa ccttgcaatt ggttctctat aaccaattcc tttactccat gcctgaagtt
     3421 gacgtaaaag catctttgca attcttcttc caagctcatg ttctatcaga aacttgcgaa
     3481 catcctctga aaaactatct ttgtctttag tttgtggaaa atatgcttgc tcttcttttc
     3541 cgtgatggaa cctgtcaacg aattcttcaa ttatcactga aatgatttta atatcttcaa
     3601 ttgggatatt ttcattagca tagagtctat cggaacatat ttgaactata tctcttaatc
     3661 ttcttattgt gatatggtct tgtttaagat cctgtgttgc attcaactga ataatcctct
     3721 acgttgcatt tgtgatattt aattcacgta tatttctgtt gcctattgat tataagttat
     3781 ggaggtatac cctttaacat atctaccttg gattttgaaa ttatgcaata tgacatacaa
     3841 tttatgcaat tcttggtatt ggttctataa gtcaagaggc tctggaacaa gtactaaagg
     3901 taaatgtgct atggtatcaa atgaagtaga acaaatatac agagcaagca gatgatcttc
     3961 tccttgataa atttctacgt caagccattg gaaaggaaca ccattttcta ctaaaaagtt
     4021 ttttctgtaa cttttgagtt cttgatatac gcaatctcta ttctactacg tagtatcaac
     4081 catgtagttt gccaagttct tccttttgta ggtgttgttt tctatcctcc tgggtggtga
     4141 atatagcgcc acatatgaag cactggaaat tagaggatat tcttgctaca ccgctatcag
     4201 atttacgaga gttatacgag tcttcttcaa ccatatgact agttccaaag tttgattaaa
     4261 taagcatttg ggaatatatt gcaatatagc aaatgtatac tgctatgggt agcctatgaa
     4321 ccacacatat tcattcgtgt ttgatttttg atgattatca tttttccatg caataaagaa
     4381 gggtatagta gaagacacat gtcagtattt ggattaagtt gtttattctt tgtattacat
     4441 atgagaacaa aaataagatt tcatctcttg gaattcttaa ttccgatcag ctacgttaac
     4501 agaggctgta atgcataccc tatgcttata aattagtcct atactataaa aacacaaggt
     4561 ctaggcatca ccatgaaaag aatggaaatc ataataccaa atagaagatt gcatgatgta
     4621 agcgaaatac taaaagatgc taatactgga ggaatgagtt gctacagaat agaagggcga
     4681 ggaaaggtaa aagcagaagc tgtttcagta ggacgtggta ccatgcgtta taaaccagaa
     4741 tttattccac gaactaaggt agaagtagtt
//
LOCUS       DATABJ010000254         1627 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1073027, whole genome shotgun sequence.
ACCESSION   DATABJ010000254 DATABJ010000000
VERSION     DATABJ010000254.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1627)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1627)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1627
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1073027"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(61..1248)
                     /locus_tag="VHF44_04105"
     CDS             complement(61..1248)
                     /locus_tag="VHF44_04105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADH-quinone oxidoreductase subunit D"
                     /protein_id="HEX2124770.1"
                     /translation="MDTVDERKISPTNGYSNLEQNFPPGFKVEREEDLDKYITLSIGP
                     QHPGSGHMRIVVVVDGDIIVHADPDIGYVHRGEEKMSESRTFVQNVPHIERPVIHDSS
                     GILYSYCLAIEELLGIQVPERGQYLRVIMAEIDRIHYTLYWLAILGIFLGHSTMFMWP
                     TADRELFVDLADMASGQRITHAYLVPGGVRSDIPSEFKTKAFEFMDYFEKRLNEYDKI
                     FYNNPLFRQRSEGIGILSRQDAIDFGTTGSVIRASGVNYDVRKKEPYEIYDKMNFEVP
                     TMNSGDSFARSILPIYDLRQSIQIIRQCLKDIPEGSFRSKLPPTPKGPAGESYRRVES
                     GRGALGHYIVSDGSPKAYRHKISAPSFRNLLVLPYLLKGARLADLPMIYWSLNIWPIE
                     IER"
BASE COUNT          523 a          318 c          256 g          530 t
ORIGIN      
        1 gtgttttata gaataaaaga attggagata gattctataa taattttgag gtttttactc
       61 ttacctttca atctcaatag gccaaatatt gagactccaa taaatcatgg gtaaatcagc
      121 taatcttgct ccttttaata aatacggcag cacaagcaaa tttctaaatg atggggcact
      181 tatcttgtgt ctgtatgctt taggactacc atcgctcaca atatagtgcc ctaatgctcc
      241 tcttccggat tcaactcttc tataagattc accagcagga ccttttggcg taggaggaag
      301 tttagacctg aatgagcctt ctgggatatc ttttaaacat tgacgtataa tctggatact
      361 ttgacgtaaa tcatagattg gcagaatact tcttgcaaat gaatcgcctg aattcattgt
      421 agggacttca aaattcatct tgtcatagat ttcatagggc tctttttttc ttacatcata
      481 atttacccca gaagccctta tcacagaacc agtagtacca aaatctatgg catcttgtct
      541 actcaaaatt cctatccctt cacttcgttg cctaaacaac ggattattgt aaaatatctt
      601 atcatattca tttaatctct tctcaaaata gtccatgaac tcaaatgcct tagttttgaa
      661 ttcggatgga atatcgctgc gaacgcctcc aggtacaaga tatgcatgtg tgattctttg
      721 tccagaagcc atatccgcaa gatctacaaa caactctcta tcagctgtag gccacataaa
      781 cattgtagaa tgacctaaga aaattccaag tattgctaac caatacaatg tataatgtat
      841 cctgtctatc tcagccatta ttacacgaag atactgtcct ctttcaggta cttgtatacc
      901 aagaagttct tcaatagcta gacaataaga atagagaatg ccacttgagt catgaataac
      961 aggtctttca atatgtggta cattttgcac aaaggttctg gattctgaca ttttctcttc
     1021 acctcgatgg acataaccta tatcgggatc agcatgtact attatatctc catctactac
     1081 aacaactatt cgcatatgtc cagaaccagg atgttgtggg cctatgctca aagtgatata
     1141 tttatccaaa tcttcttctc tctcaacttt aaatcctggc gggaagttct gttctagatt
     1201 tgaatagcca ttagtgggag atatttttct ttcatctaca gtatccattc atatatctaa
     1261 ttgcagttag ccattataag ataaatgaat tgtaactaca atatctagcc tatcgcataa
     1321 ttacatgaaa tgggacttct ttatcatttg cattaacttt gcatattact aacgcaataa
     1381 caaaaaaata attaatgaaa ctaccagagt gagattctca caaatatgat ctcaattgag
     1441 aagggatcta tttatgtctg ggacgaacta gatcctagaa atgaatgctc cttggtattt
     1501 agatgatata ttcacgtaac atcatatata atttataata atatcgagag ctttggacac
     1561 atttagaaag ctgcaactgc atatcctaac aaatattgga ataacacaag actatgggag
     1621 actttaa
//
LOCUS       DATABJ010000255         3892 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1701977, whole genome shotgun sequence.
ACCESSION   DATABJ010000255 DATABJ010000000
VERSION     DATABJ010000255.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3892
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1701977"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..534)
                     /locus_tag="VHF44_04110"
     CDS             complement(<1..534)
                     /locus_tag="VHF44_04110"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124771.1"
                     /translation="MSAPQNKHENTNEQKKMSKTEHKACPLCGRDLEKREKSKFSKTT
                     IDGISYAFDTIDCMSMFKRLKSAYGQRLDDFLGNEQYISDPFWDNAIPKEEEIREIQQ
                     EEQKQAMKEGIEILDDPHKIQELGFTLLRLAVNEILLILSTSNAFHRQERLGGLQILK
                     EVREKNRMMRIRLLSPFD"
     gene            complement(871..1008)
                     /locus_tag="VHF44_04115"
     CDS             complement(871..1008)
                     /locus_tag="VHF44_04115"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124772.1"
                     /translation="MSEESEREEIKDETHQSQDEEQEEELDKAEEEEEAKTVEEDGDV
                     E"
     gene            complement(1723..2343)
                     /locus_tag="VHF44_04120"
     CDS             complement(1723..2343)
                     /locus_tag="VHF44_04120"
                     /inference="COORDINATES: protein motif:HMM:NF018446.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0022841 - potassium ion leak channel
                     activity [Evidence IEA];
                     GO_process: GO:0071805 - potassium ion transmembrane
                     transport [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="TMEM175 family protein"
                     /protein_id="HEX2124773.1"
                     /translation="MTTDAFTPKVKLEHVISFSDAVLAFAITLMAISIDIPGLPTNLT
                     QSELVGKLYEMYPQFESYLISFAIIAIFWISYHQVFNHIMGSPIQMVYLNLLFLMLIT
                     LLSLSTSLVINYGSYHIPYIIYCTIVIMTSSLLAIIWWYATRDRKLINKNIHPLFVKG
                     VMVNLLSIPAVFSLSIFISFMDLNIAQYTWLGIVPLSIVIRKKYKH"
     gene            2731..2952
                     /locus_tag="VHF44_04125"
     CDS             2731..2952
                     /locus_tag="VHF44_04125"
                     /inference="COORDINATES: protein motif:HMM:NF025280.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C2H2-type zinc finger protein"
                     /protein_id="HEX2124774.1"
                     /translation="MANNNQTFSCETCNSTFNSRDELKQHSIKEHEDKTTTTVGSTEL
                     TFRCETCNAVFNSREDLRQHSIEEHEGKR"
     gene            complement(3127..3561)
                     /locus_tag="VHF44_04130"
     CDS             complement(3127..3561)
                     /locus_tag="VHF44_04130"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124775.1"
                     /translation="MEIKKRPTGVTVIAVLVIIGGVLLLLAGIAGVVVGSLSISQIIG
                     LGFVIIGAIILAVGIGYLVVSYGLLKGKRWSWTITVVLLFIGIAIDVASIIIFGYFTF
                     DTDTSSFLTTNSGSIAGIIISVIILYYLYRPHVKSYFGKLST"
BASE COUNT         1295 a          671 c          632 g         1294 t
ORIGIN      
        1 gtcaaaaggg ctcagaagtc ttattctcat cattctattc ttttccctga cttctttgag
       61 tatttgtaat ccgcctagac gctcctgtct gtgaaatgca tttgaggtag aaagtataag
      121 gagaatttca tttacagcta acctcagaag tgtgaagcca agttcttgta tcttgtgtgg
      181 atcgtcaaga atttcaatac cttctttcat tgcttgtttc tgctcttctt gttgtatttc
      241 tcttatttcc tcttccttag gtatagcatt gtcccagaat ggatcagaaa tatattgttc
      301 gtttccaaga aaatcatcaa gtctttgtcc atatgcactc tttagtcttt tgaacatact
      361 catgcagtct attgtatcga aggcgtaact gatgccatct atggtggttt tgctgaattt
      421 tgatttctcg cgtttctcaa gatctctacc gcacaaagga cacgctttat gctcagtttt
      481 gctcattttc ttctgttcat tagtgttctc gtgtttattc tgaggtgcag acaaatgtaa
      541 acaatttgga ttatacaatg cttaaagttt gcggattcgg ataagcttca ggtgtatgta
      601 catgtgcgat ttcatataaa ataatcagat aaggtctata aatctaatca ttgactgagt
      661 aaattataat aaaagtcaga tttcgaaagg tatcaagtat tatctctgct attcaatgtg
      721 acgctaccat gtgataatat cttcgagcta ttgtgcgtcc tcgcaagcag tatcttgtgc
      781 ttttatggtt ttattgaagc ctctatatct atgaacatct tccacgaaat tgtagatgat
      841 tgttctatta ttgctgtgtt cttcttcttc tcattcaacg tctccatctt cttccactgt
      901 tttggcttcc tcttcttcct ctgccttgtc caattcttct tcttgttctt catcttgtga
      961 ttgatgagtt tcgtctttaa tctcttctct ctcgctttct tcactcatag ttatcaatta
     1021 atatatacat actcacatac ctcatctaag tatctagtct atcgagtaga attcttctaa
     1081 ccattattca gatttaatat gttgataata ttgaagttgg agaaaaccta cttcttcttt
     1141 acactagagt tattaataat ttcaattaga aatgtcgata attcatcaaa gaatatgtac
     1201 atattatcga gtcagtaaat acaatagttt atagtcagta aaccgaaatt atattttata
     1261 tatcaaatgt tagcgtaaaa atatttgtta tctgtgaacc tatctaatac ttaaagccat
     1321 cggagattta ttttatccaa gctttttccc tctataagca agacatggct cttgtaataa
     1381 tgtcccgtga tagcggttgc aactatttat gtttctatca tgcaccttaa accaaatggg
     1441 agagtgaaga gaagagtttg ctaatccatt tatatctcat caacatacag gatttaaacc
     1501 tatagaagta gataatacaa ccaatttttc tttcgggtca tctgtagcca gaaccataaa
     1561 aaattatagc gttctgtgaa aactcaggga tcacaacgta tactaggata tgtcaaaatg
     1621 atggcttttc actacggttg gagagaaggc attagtaaca acaaaagttg attagactac
     1681 tccttgaaaa gtgtcttctt taaaatggta tcatgatgta aatcaatgtt tatacttttt
     1741 tctaataaca atgctcaatg gtacaattcc caaccaagtg tactgtgcaa tatttaaatc
     1801 catgaatgat ataaaaatcg aaagagaaaa tactgcagga attgaaagga ggtttaccat
     1861 aacgcccttc acaaaaagtg gatgaatatt cttgtttatt aatttgcgat ctcttgttgc
     1921 ataccaccat ataattgcaa gtaaagaact tgtcattatt acaatggtac aataaataat
     1981 gtatgggatg tgatatgaac catagtttat tacaagtgat gtagacaaag ataagagagt
     2041 tataagcata agaaatagta aattaagata aaccatttgg ataggcgatc ccataatatg
     2101 attgaagact tgatggtaag aaatccagaa gatggcaatt attgcaaagc tgataaggta
     2161 gctttcaaat tgtggataca tctcatacaa tttgccaact aattcagatt gtgttaaatt
     2221 tgtaggtaaa ccaggtatat ctattgaaat agccataaga gttattgcaa atgcaagaac
     2281 agcatcgcta aaagaaataa cgtgttctaa ttttactttt ggtgtaaacg catcagtagt
     2341 catactaaag tttgattaag tttattatag atattagcat tattacacta atgatagttt
     2401 tctgctgaaa gatgaattct gaccaaagtc tctgatatat tgagtgtact gaatttcgta
     2461 actgcaagaa ttgaaactaa gtcactaata ctaaacaagg aatgtattga gttggcataa
     2521 ttgacgtaat tttttgactg tcatagttaa ttttactagc gttaacatat ggatccttgt
     2581 ataatataca atattctatg ttttccaact aatagatgaa cccgtaatat tagcgggttc
     2641 ggtgggatgc aggacagaat tgactctatt ttaccacgca gaatacacta actgttaaag
     2701 caaataatta ccatatagat taccaaatca atggctaaca ataatcagac atttagttgt
     2761 gaaacatgca actcaacatt caactcacgt gatgaattaa aacagcacag tataaaagaa
     2821 catgaagata aaactactac tactgtcggc agtactgaac tgactttcag atgcgaaaca
     2881 tgtaatgcgg tatttaattc acgtgaagat ctaaggcagc acagcattga agagcatgaa
     2941 ggtaaaagat aactatacca cttcgctgtt agatagagag agaagagaag agtaataatc
     3001 aaactggaac ttcagaacca attataagag taagtcaact catttctttc aatttgttaa
     3061 agtctgccaa tattcattcg gatcctttca tatttggatg tctctacgta acaggccaaa
     3121 aattgattac gtggagagtt taccaaagta tgacttgaca tgaggtctat acagataata
     3181 caatattatg acactgataa ttatgcctgc aatactacca ctgtttgttg taagaaaact
     3241 agatgtatcc gtgtcaaaag taaaatatcc aaaaataata atagaagcta catcgatagc
     3301 tattccaatg aatagcaata ccacagttat agtccatgac catctttttc cctttaacaa
     3361 tccataagac acaacaagat atccaattcc tactgctaat atgatagcac caattataac
     3421 aaaacctaag ccaatgattt gcgatataga taaagatccg actacaactc ctgcaattcc
     3481 cgctaaaagt aatagaacac caccaattat aactaagacg gcaataacag taactccggt
     3541 tggacgcttt tttatttcca atttctcaat gccatcagaa ggaattgata tacatataca
     3601 tttctatgta tatatttcac aagatataca taggtttgga atagttaaag acagcaacaa
     3661 gagttcacag ttatgcagat caatatcttg ctcaaggtca tagaataagt gcacgtgagg
     3721 ctttttatca tcctcctcac aaatgcgata gacatatagt agatataaat aaagattcga
     3781 attcaaaaag ataaaaatcg tttaaccata ttatttctat catggacagg ttttagcaga
     3841 tcttttggct cgcttagaaa ttctaccaga aatagttatc ccgtgcttta gc
//
LOCUS       DATABJ010000256         2987 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_149535, whole genome shotgun sequence.
ACCESSION   DATABJ010000256 DATABJ010000000
VERSION     DATABJ010000256.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2987)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2987)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2987
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_149535"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(177..746)
                     /locus_tag="VHF44_04135"
     CDS             complement(177..746)
                     /locus_tag="VHF44_04135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEX2124776.1"
                     /translation="MNLSAMLPKLEYIKQARIRLSITQRKLALLAGISTSMINQIESG
                     RCKPSYETARKIFEILSSLEGQSSMKAGDICSRKLISVQKHETLHAAINKMRSNSISQ
                     IPVFDGSRVVGILSEDALAKSMVEKDEKKLRNIMIMIIMEPPPPVVDVSTPAKALVPL
                     VRFAKCVLVSEKGDVIGIITVTDTLKMVE"
     gene            946..2241
                     /gene="prf1"
                     /locus_tag="VHF44_04140"
     CDS             946..2241
                     /gene="prf1"
                     /locus_tag="VHF44_04140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003747 - translation release factor
                     activity [Evidence IEA];
                     GO_process: GO:0006415 - translational termination
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor aRF-1"
                     /protein_id="HEX2124777.1"
                     /translation="MLLAAMNSNVNQSKWDSVKRYKLTKMLNELSNISGHGTELVTVY
                     IPPRRPIFDIISQLRNEAGTASNIKSDLTRTHVQDALSKTIEHLKLFKEPPENGLVIF
                     CGAIPTGKGLGTEKIELYSVIPPKPIQINLYRCDDHFWIDHLKDMMKDDKVIGILALD
                     TQEAGLGILTGDRWEVIDTLTSGVAGKHRQGGQSARRFERLRDNELNEFYHRVADHAQ
                     KVFVDQFKVRGIIVGGPGPTKDNFLREEYLDYRLQNNVISTLDSSYSGDEGVREIIDK
                     INEQGVMTEYRLMEEKKILKKFMSEVYSGKGLGIYGIFDVIKALKNGIADLVIVTDDI
                     GYLKLDVKCKRCGNIQEHFIERPRLISARQEILSKPCPSCGAIDFESSEKDIVDYLEE
                     MTIMTGSKIEIISGRTEEGAQLASLGKIGSLLRFRPTSV"
     gene            2394..2636
                     /locus_tag="VHF44_04145"
     CDS             2394..2636
                     /locus_tag="VHF44_04145"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2124778.1"
                     /translation="MGIDRQQRQIRKVMIVEDEHDILLLYKDYLKSKGYSVIASSTTA
                     DEAFTDFEKYKPDLIIIDYKLPGIKNGLQAAKEILT"
BASE COUNT         1008 a          471 c          559 g          949 t
ORIGIN      
        1 ctttcattta tataatcata tcgataagtg aaaaactaga tggaaaaaat tgagcagaat
       61 aagaaatgtg cattatgtga atgcgctctg ccagaaaata gtgaacttaa tatctgtggt
      121 gaatgtataa aatctgcaga ctgttgtatt ggtctggaaa aaataagtga atgaatttat
      181 tctaccattt ttaaagtgtc agttacagtt attatcccta ttacatctcc tttttcgctg
      241 actaaaacgc atttagcaaa tctcactagg ggaacaagag cctttgcggg tgttgacacg
      301 tcaacaaccg gtggtggtgg ctccattatt atcatgatca tgatatttct tagcttcttt
      361 tcatcttttt ctaccatgct ttttgcaaga gcatcctcac tcaatattcc tacgactcga
      421 gaaccatcaa atacaggtat ctggcttatt gaattacttc tcattttatt aattgcagca
      481 tgaagagttt cgtgcttttg tacagaaatc aatttgcgac tacatatatc gccagccttc
      541 atcgaggatt gaccttctag agaactcaaa atctcaaata tctttctagc agtctcataa
      601 ctcggtttac atctgcctga ttcaatttga ttaatcatgg acgtgctgat tcctgcaagt
      661 aatgctaatt tacgctgtgt gatacttaat ctaattctcg cctgtttaat atattcaagc
      721 ttcggaagca ttgcagatag attcattttc ttttgatacc gatttataat ttcgcatcag
      781 ttactttttt tgtacattct cttaaatcaa gataataata tacaaaatgt cttctaattc
      841 catggaatat tcaagtctgc taatagcttt ggaaatagag tcattgtaag catgtatttg
      901 atcatgaata tttgatagcc ttatatactt tacaaatcaa ttccgttgtt attagccgca
      961 atgaattcaa atgttaatca gtccaaatgg gactcggtca aaagatacaa attgactaaa
     1021 atgctcaatg aactttcgaa tatatcaggt catggaacag agttagtgac tgtatatatt
     1081 ccaccacgac gcccgatttt tgatattata tctcaattac gaaatgaggc gggaactgcc
     1141 tccaacataa agtctgactt gactaggacg catgtccaag atgcgttaag taaaaccata
     1201 gaacacctta aactttttaa ggaacctcct gagaatggtc ttgtcatttt ctgtggagct
     1261 attccaactg gcaaaggttt gggtacagaa aaaattgaac tctattctgt tattccacct
     1321 aaacccattc aaattaatct ttatcgatgt gatgatcatt tttggataga tcatctaaaa
     1381 gatatgatga aagatgataa ggtaatagga atattggctt tagatactca ggaggctggt
     1441 cttgggattc taactggaga tagatgggaa gtcatagata ctctaacttc tggtgtcgcg
     1501 ggaaaacata gacaaggagg acaatctgct aggagatttg agcggcttcg cgataacgaa
     1561 ttaaatgaat tttatcatag agttgcagat catgctcaaa aagtctttgt cgaccaattc
     1621 aaagtaagag gaatcatcgt tggtggtcct ggtccaacaa aggataattt tcttagagag
     1681 gagtatcttg attatagatt gcagaataat gttatttcta cactagattc ctcatattct
     1741 ggagatgaag gagtaaggga aatcattgac aaaataaatg aacaaggagt aatgacagaa
     1801 tatcgcctaa tggaagaaaa aaaaatatta aaaaaattca tgagtgaggt atactcaggg
     1861 aagggtttag ggatatatgg gatcttcgat gtgataaaag cgttgaaaaa tggtattgct
     1921 gacctcgtaa tagttactga tgatatcggg tatttgaaat tggatgtaaa atgtaaaaga
     1981 tgcggtaaca ttcaagagca ttttatagag aggccaagat tgatttcagc aaggcaggag
     2041 atattatcaa aaccttgtcc ttcttgtgga gcaattgact ttgaaagtag tgaaaaagat
     2101 attgtcgatt acttagagga aatgactatc atgacaggta gtaagataga aattatatca
     2161 ggtaggactg aggaaggtgc acagttggcc agcttaggaa aaatcggctc gctcctacga
     2221 tttaggccga catctgtatg aaagattata aagttcatag ttattactag ctgcaagtcc
     2281 tttctaggaa tcacacattt catataaaac ccgtcgtgtg gtcgatagtt ggcttttaaa
     2341 attaattatg gtgtataata tcttttttag gaattatttc cattataacc tatatgggca
     2401 tagatcggca acaaagacaa attcgtaaag ttatgatagt ggaggatgaa cacgatatac
     2461 ttttattata caaggattat cttaagagta aaggatattc tgtaattgcg agctcaacaa
     2521 cggccgatga agcttttaca gattttgaaa aatacaaacc agatctaata ataattgact
     2581 ataaacttcc ggggataaaa aatgggcttc aagctgcaaa agagatcttg acttaattcc
     2641 catctgctcg gatattgatt ataacagctc atgaagatat aaagaatgaa ttgaataatg
     2701 atgacttttt ccaaaataaa aggatcgaaa taataataaa acctgttaga ctcgctagac
     2761 tagattatat tattcaagaa gtgtaactag aaatcaattt agtagaacat atatttttgt
     2821 aaaggatctg gtcgatcacc atatataata ccaataaaag aattacatcc agctacatta
     2881 tcgatcgaag tatattccta tgcaatactt caaactttag aagaaaccta aatacttgtt
     2941 gtcagttatt tcaatgtgtg ctgttcaaat gagatctatc ttttatt
//
LOCUS       DATABJ010000257         2656 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1945166, whole genome shotgun sequence.
ACCESSION   DATABJ010000257 DATABJ010000000
VERSION     DATABJ010000257.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2656)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2656)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2656
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1945166"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..324)
                     /locus_tag="VHF44_04150"
     CDS             complement(<1..324)
                     /locus_tag="VHF44_04150"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124779.1"
                     /translation="MVTTPIGHNAHAQEHMVSFSGGDDLPIINDPNLKVELIVQGLDL
                     PTTMAFLGPDDILVLEKDKGTVQRIVNGKMLPEPLLDVNVATSVERCMCGIAISQSNT
                     GSTYVF"
     gene            676..981
                     /locus_tag="VHF44_04155"
     CDS             676..981
                     /locus_tag="VHF44_04155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="Rieske 2Fe-2S domain-containing protein"
                     /protein_id="HEX2124780.1"
                     /translation="MTWVKVCYERDIKENHGKEINVNGIRIALFHANGRYYAIEALCR
                     HQDGSLAPGKIDGEVVECPLHSWHYNIKTGELLDYLEGVKLTTYKTNVKDNEIFIDI"
     gene            1046..2443
                     /gene="cysS"
                     /locus_tag="VHF44_04160"
     CDS             1046..2443
                     /gene="cysS"
                     /locus_tag="VHF44_04160"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: protein motif:HMM:TIGR00435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004817 - cysteine-tRNA ligase activity
                     [Evidence IEA];
                     GO_process: GO:0006423 - cysteinyl-tRNA aminoacylation
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEX2124781.1"
                     /translation="MRLYNTLTRMIDEINTQHQIIRIYLCGVTVYDDSHIGHARTIIV
                     FDVLRRYLEFKGYTVNFIQNFTDVDDKIINRAKREGLTAKEIAAKYIENYFIDFSHLN
                     VLPANQFPRATEHIKEMINLIQGLINKNYAYITLNGVYFRVRSFSTYGNLSKKTIEEL
                     ESGSRVEIDQSKENPLDFALWKFYSEEPAWDSPWGRGRPGWHIECSAMALKYFESPFE
                     IHGGGNDLIFPHHENEIAQSEAFCETLFAKLWLHTGMVTINSEKMSKSLGNIITVREA
                     LNRWGANSLRIFCISVQYSKPLDFSDKILLECMQRWRQIETCAYELRFANGCGGQIKE
                     IELLTHESIKEFTAALEDDLNTSLALTIFMKFVADINRYAANDNLTHDMSRIAIVTFN
                     HCMEILGLKVLEPTDTEKKEIEDLVVIRNKFRTEKKFEDSDSIRRQLIDRYGVELMDH
                     KNRTLWKKVETPLMV"
BASE COUNT          947 a          401 c          488 g          820 t
ORIGIN      
        1 gaaaacatat gttgagccag tgttactttg tgatatagca attccacaca tacatctttc
       61 aacagaagta gcaacgttga catctagcag tggttctggg agcattttac cattaactat
      121 tctctgaact gttcccttgt ccttctccaa aactaatata tcatcaggac ccagaaatgc
      181 catagtagta ggtagatcca gtccttgaac tatcaattct acctttaaat taggatcatt
      241 aataatggga agatcgtcgc cgccagaaaa actcaccata tgttcttgtg catgagcatt
      301 atgtcctata ggcgtcgtaa ccaaaattaa aaacataacc ataaaaaaat ataacatttt
      361 aatgtttaat cacgtcaatc aatctattaa tatagatata ttattatata tgccttctaa
      421 ctaaggttta tgttattcgt tcatataaca aatgttgctt gcatacttat gttttagaat
      481 caataacatc attgacgtct ataatataga tcccttgagg caattgttaa tgtatttctt
      541 ttctaaacca ttaaaggtga ctccatgaga cgacgtactc tactgaacaa aaataaaatg
      601 caaaatattt cattgcttaa ttaaattctt gataagattt tatagctgta aattatctta
      661 tatagaagaa tcctaatgac atgggtcaaa gtatgctatg agagagatat caaggagaac
      721 catggaaaag agataaacgt aaacggaata agaattgccc tattccacgc aaatggtaga
      781 tattatgcta tagaagcgct ttgccgtcat caggacgggt ctttggcccc aggaaaaatc
      841 gatggtgaag tagttgaatg tccattacat tcctggcact ataatatcaa aactggtgaa
      901 ttgttggact atttagaagg ggtaaaacta acaacatata aaacaaatgt aaaagataat
      961 gagattttta tagacattta aatatttaat gagaaaactt tgataaatca gattaaaaag
     1021 cattcattaa tagaggtctt gtaatttgag attatacaat acacttacaa gaatgatcga
     1081 cgagattaac acacaacacc aaattattag gatttacctg tgtggagtga cggtgtacga
     1141 tgactctcat ataggtcatg caagaacaat aattgttttt gatgttttac gccgatatct
     1201 tgagtttaaa ggatatactg taaactttat tcagaatttt actgatgtag acgataagat
     1261 aattaatcgt gctaaaagag aaggattgac tgcaaaagag atagcagcaa aatacattga
     1321 aaattatttt attgatttct ctcatctaaa cgtactgccc gcaaatcaat tcccacgtgc
     1381 tactgagcac ataaaagaaa tgataaattt gattcaaggg cttatcaaca agaattatgc
     1441 ctatatcaca cttaacggtg tctattttcg ggtcaggtcc ttttcgacgt atggtaactt
     1501 atctaaaaaa actattgaag aattagaatc aggatcaaga gtagaaatag atcagtctaa
     1561 ggagaatcct cttgattttg ctttatggaa attttattca gaggaaccag catgggatag
     1621 tccgtgggga agaggcaggc ctggatggca cattgaatgt tctgcaatgg ctttgaaata
     1681 ttttgaaagt ccttttgaga tacacggagg cggaaacgat cttatatttc cacatcatga
     1741 aaatgaaatt gctcagtcag aggccttttg tgaaactctc ttcgccaaat tatggttaca
     1801 tactggcatg gttactatta attcggaaaa aatgtcaaaa tctcttggca atatcataac
     1861 tgttcgagaa gctcttaatc ggtggggagc aaattctctc cggatttttt gtatttctgt
     1921 tcagtattcc aaaccactcg atttctcaga taaaattctt ctagaatgca tgcagagatg
     1981 gcgtcagata gaaacctgtg catatgagtt acgatttgcg aacggatgtg gaggacagat
     2041 caaagaaata gaattgttaa ctcacgagtc cattaaagaa tttacagctg cattagaaga
     2101 tgatttgaat acatcgcttg ctcttacaat atttatgaaa tttgttgcag atattaatcg
     2161 ctatgcagca aatgataatc ttacacatga tatgtctcgt atagctatag taacttttaa
     2221 ccattgtatg gaaatactag gtcttaaagt attagaacct acagatactg aaaaaaaaga
     2281 aattgaagat cttgttgtaa taagaaataa atttagaact gaaaaaaaat ttgaagattc
     2341 tgatagtatt aggagacaat tgattgatag gtatggtgtt gaacttatgg atcacaaaaa
     2401 cagaacacta tggaagaagg ttgaaacacc tttaatggta taaaagatat ctctggtaat
     2461 catatagtga tgggcagata agaataaggg ggatctataa ttaggggaag aattcaaata
     2521 ttgtctttca tttatataat catattgata agtgaaaaac tagatggaaa aaattgagca
     2581 ggagaaatgt gcattatgcg aatgtgctct gccagaaaat agtgaactta atatctgtgg
     2641 tgaatgtata aagtct
//
LOCUS       DATABJ010000258         2892 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1945192, whole genome shotgun sequence.
ACCESSION   DATABJ010000258 DATABJ010000000
VERSION     DATABJ010000258.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2892)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2892)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2892
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1945192"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            291..770
                     /locus_tag="VHF44_04165"
     CDS             291..770
                     /locus_tag="VHF44_04165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124782.1"
                     /translation="MSQIVFVNKEPFYYYAIILVLSFGIPFGTLFGKSRKLISSIGDR
                     MKHSANWSASAKILNGLCWAGPFAAIAAFPSLYQYLILLGIGLGNFSTYLLMKRYSGL
                     DNREQMIVGLVSLTAIPIVAEINTTLFTANQDIAIMISRILISIAYGIGGIYGIITK"
     gene            867..1616
                     /locus_tag="VHF44_04170"
     CDS             867..1616
                     /locus_tag="VHF44_04170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HEX2124783.1"
                     /translation="MSSNKNVRSSERESRAAAVCIVSGGLDSICTAAYLTREKGYDLY
                     MLTYIYGQRAKKEVQQAREFSKVLKAKDHRVINIAFMKNLYGRTNALTDSKQHLPKNF
                     DYSIVVPIRNAIFITIATAWAMSIKANLVAYGAHSGDSHYPDCRPEFIKSITKTLNLA
                     EVDGIISGLRQKITVWSPAMDGMDKSKLLSVGYKIMGDEIFKTWSCYSEGVKSISTNI
                     LHCGICESCINRKIAISKAGIKDKTHYAKDY"
     gene            1600..2331
                     /locus_tag="VHF44_04175"
     CDS             1600..2331
                     /locus_tag="VHF44_04175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-carboxy-7-deazaguanine synthase QueE"
                     /protein_id="HEX2124784.1"
                     /translation="MQKITNKIQLSEIFTSIEGEGIFFGTKTLFVRMAGCHLKCHWCD
                     TAYALPLDSGSRYTIDDAKKLIGEQLQPNTYKVNFTGGEPLIQYEAVIELAKFVKEEQ
                     GLRTYLESACFDSNRYVKVLPFIDICKVEFKMSDSEVIDLRHYDNLIRNELECLEAAI
                     ANHKLTYIKVVVSNSTDLCEFKDLVRNIFQHVKIANIAGFIIQPSYGINEPKIERLLE
                     FYDAVYPIYQEVRIIPQLHKIIGAR"
     gene            2339..>2892
                     /gene="folE"
                     /locus_tag="VHF44_04180"
     CDS             2339..>2892
                     /gene="folE"
                     /locus_tag="VHF44_04180"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003934 - GTP cyclohydrolase I activity
                     [Evidence IEA];
                     GO_process: GO:0042559 - pteridine-containing compound
                     biosynthetic process [Evidence IEA];
                     GO_process: GO:0046654 - tetrahydrofolate biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEX2124785.1"
                     /translation="MQQQQYEKKKKKGTINKKKIEKLLRQLLIELGENPDREGLRDTP
                     RRMADMYEEIFAGYMMNAELDVSFGEETDAIIAKDIQFYSMCEHHMLPFYGKIHIAYV
                     PSGKVFGISKLARLVEKFSRRMQIQERLTKEVTEEIMKMGVKGVLVVAECEHLCMKMR
                     GVRNSSLIMTIAHRGIMDQKELRE"
BASE COUNT         1008 a          450 c          580 g          854 t
ORIGIN      
        1 ctaacattag attagttcat tgtatttgat tctacttcta gaatatttat atctaagttt
       61 ttgaaatact attgttaaca gaaacctctc actactatac attgtagata cctgttaact
      121 aaggcattgt tgagatcgag ttattataat ttttatgaag ttaaaacata ttattatcgt
      181 ttactatagt tcaattattc ttgcaatgag acgcacaggg aagtgaagca cgacgggtat
      241 ttggaattct tttcattact atatctatag cagtaggtgc cgcaactatt ttgagtcaaa
      301 ttgtatttgt caacaaggaa cccttctatt attatgccat catcttggtt ctaagttttg
      361 gtattccttt tggaacactc tttggcaaat ctcgcaaatt aatatcttca ataggcgata
      421 gaatgaaaca tagcgcgaat tggtctgcta gtgcaaaaat tctgaatggt ctatgctggg
      481 ctggtccttt tgctgcaata gctgcatttc catctctcta tcaatatcta attttacttg
      541 gtattggact aggtaatttt tcaacatacc tgctaatgaa aagatatagt ggactcgata
      601 atcgtgagca aatgattgta ggcctggttt ctctaacagc aattcctatt gtggcggaga
      661 ttaatacaac tctattcacc gcaaaccaag atattgcaat aatgatatcg agaatcttga
      721 tatcaattgc ttatggtata ggcggaattt atggtataat tacaaaataa tagacaagat
      781 aatgatatct aagaactaga catattcttg tcacattcac atttacataa atgtaggtaa
      841 aatacacata aagaatacat acggtcttgt catcgaataa aaatgtccga tcatcagaaa
      901 gagaatctag agcggcggca gtttgtatag taagcggagg tcttgattct atctgtactg
      961 cagcttattt aaccagagaa aaaggctacg atctatacat gctcacatat atttatggac
     1021 agcgagcaaa aaaagaagtc caacaggcta gagagttctc aaaggttttg aaggcaaagg
     1081 atcatcgtgt cattaatatt gcattcatga aaaatctata tggcagaaca aatgccctga
     1141 cagatagcaa acagcattta cctaaaaatt ttgattacag tattgttgtc ccgattagaa
     1201 atgcaatttt cattactatt gcaacagcat gggctatgag cataaaagcc aatctagtag
     1261 catatggtgc acatagtgga gacagccact atcctgattg ccgtccagaa tttataaaat
     1321 ctattactaa aacactcaat ctagcagaag ttgatggcat tatatcaggt ttaagacaga
     1381 agattactgt atggtctcct gcaatggacg ggatggacaa atctaaatta ttgagtgttg
     1441 gatacaaaat tatgggcgat gaaattttca agacatggag ttgctattct gagggagtca
     1501 aaagcattag cacaaatatt ttgcactgtg gaatatgcga atcgtgtata aataggaaga
     1561 ttgcaattag caaggcaggt atcaaggata aaacgcatta tgcaaaagat tactaacaaa
     1621 atacaactga gcgaaatatt caccagtatt gaaggcgagg gcatcttttt tggtacaaaa
     1681 acactgtttg tgaggatggc tggctgtcat ctaaaatgtc actggtgtga taccgcctat
     1741 gcattgccct tagatagtgg aagtcgttat actattgatg atgcaaagaa actaattgga
     1801 gagcagttgc aaccaaacac ttacaaggtt aactttactg ggggcgagcc attaatacaa
     1861 tatgaggctg ttattgaact ggccaagttt gtcaaggaag aacaaggact taggacatat
     1921 ttagaatccg catgttttga ttctaataga tatgtaaagg ttctgccatt tattgatatt
     1981 tgcaaagtag aattcaaaat gagcgattca gaagttattg atctcagaca ttatgataat
     2041 ctcatacgca atgaactcga atgtcttgaa gctgctattg caaaccataa acttacttat
     2101 attaaagttg tagtatcgaa ctcaacagat ctttgtgagt ttaaagattt ggtacggaat
     2161 atatttcagc atgtaaaaat tgcaaatata gcaggattta taatacagcc aagctatgga
     2221 ataaatgagc caaaaatcga gaggcttttg gaattttatg atgcagttta tccaatatat
     2281 caagaggtta ggataatacc gcaattacat aagataatag gagccagata aaagaaaaat
     2341 gcagcagcag cagtatgaaa agaagaagaa aaaaggtact ataaacaaga aaaagattga
     2401 aaaattgtta agacaacttt tgatagaact aggagaaaac ccagaccgtg aaggtttgag
     2461 agatacacct aggcgtatgg ctgatatgta tgaggaaatc tttgcagggt acatgatgaa
     2521 tgccgagctt gatgtgagtt ttggtgaaga aactgacgca attattgcta aagacatcca
     2581 attttatagt atgtgcgaac atcacatgct tcccttttac ggaaaaatac acatagcata
     2641 tgttccatct ggcaaagtat ttggaatatc aaagctagcc cgcctagttg aaaaattctc
     2701 tcgcagaatg cagattcaag agaggttgac taaagaagta actgaagaaa taatgaaaat
     2761 gggagtaaaa ggagtattag ttgtagcaga atgtgagcat ctttgcatga aaatgcgtgg
     2821 tgttaggaat agcagcttga taatgacaat agcacaccgt ggtattatgg accagaaaga
     2881 gctccgagaa ca
//
LOCUS       DATABJ010000259         2533 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1946279, whole genome shotgun sequence.
ACCESSION   DATABJ010000259 DATABJ010000000
VERSION     DATABJ010000259.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2533)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2533)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2533
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1946279"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(458..1774)
                     /locus_tag="VHF44_04185"
     CDS             complement(458..1774)
                     /locus_tag="VHF44_04185"
                     /EC_number="3.6.4.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004386 - helicase activity [Evidence
                     IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEX2124786.1"
                     /translation="MTKTFQELGMSAEINRALKENKFEAPFPIQEAAIPFLLKGIDVV
                     GQAHTGTGKTAAFSLPILMKVKRNGPIQALILVPTRELAMQVTTEINKFAKYTGIRTV
                     SIYGGQSINLQHDQLRRGVQIVVATPGRLIDHVKHGSIQLENVKYVVLDEADRMLDMG
                     FIDDIKFILFYVNDDRQTCLFSATMPPEILRLAQEYMKDIQQIRLNEEELSLDTIDQS
                     YLIVQEREKFKHLCNLIRSRDKKQTIVFAATKQRTQKLAWELKQEGFKAITIHGDLSQ
                     KQRDNAMYRFKKGIEDVLVATDIAARGIDVPAVGHVINYDIPEDPLIYFHRIGRTARA
                     GGTGRAISLVSQDRIEDFGRILRQTEHPIRKLNEELGIEVPVAQYRSHGYRQRRSYGY
                     GDTRGKRSFGSRRGSSAYGGYGENRSERNRYGQGQSNGDDRRSRYY"
     gene            2160..2339
                     /locus_tag="VHF44_04190"
     CDS             2160..2339
                     /locus_tag="VHF44_04190"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124787.1"
                     /translation="MVSKVLITSGTQQTALDDQELKEVINAIIYASNQSEQSKNFEQV
                     KRYKALLAKLEPLSK"
     gene            complement(2328..>2533)
                     /locus_tag="VHF44_04195"
     CDS             complement(2328..>2533)
                     /locus_tag="VHF44_04195"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124788.1"
                     /translation="RNLPQKTKGVRLMTLRCNYLHAGGKIKLLLSIRAGFLLLRQDLL
                     RVFDNRVILQRIEEKYNNLLLLA"
BASE COUNT          794 a          480 c          424 g          835 t
ORIGIN      
        1 ataacaatac aacagttctt tgaaaggcta gatataggat gaaaatgcta taagtaagga
       61 tataataact agtttgatgg gattgttata aagagccagt aaaaaaagat cgaagtaata
      121 gcacacataa gtctaattta agcttatttc ctgcttgatt tgtcgataag tggagcatta
      181 gcaggataaa aagtgttgaa aaatttttac atgtattatt ttgtgacgtc ctgttattaa
      241 tagaaaatta agacttaaat ttaaagccaa tttattatta tgataaaaat atttaacttt
      301 taaaaaatgt taaatttctg ttaaataata tttcatttag tacaaaattc atagaaaatt
      361 gccatagatg ctattataag cacatatatt caatgaaggc tggtaaaaag ttaggttagt
      421 cacacaaaaa gactaattaa caatacgtat ttataaacta gtaatagcga cttcgtctat
      481 catctccatt actttgtcct tggccgtatc tatttcgttc acttctattt tcaccatagc
      541 ctccgtaagc actactgcca cgcctagatc caaagcttcg tttacctcta gtatcgccat
      601 aaccataact tcgtctttgg cgatatccat gagatctata ctgagctaca ggaacttcaa
      661 ttcccaactc ttcatttagc ttgcgtatag gatgttcagt ctgtctcaaa attctcccaa
      721 agtcttcgat cctatcttgg gaaactaagg aaatagcccg acctgtgcct cctgctctag
      781 cagttcttcc aattctatgg aaataaatta atgggtcttc aggtatgtca tagtttatca
      841 catgacctac tgctggaaca tctattcccc ttgctgcaat atctgtggct actaagacat
      901 cttcaattcc ctttttaaat cgatacatgg cattatctct ttgtttctgg gatagatcgc
      961 catgaatggt gattgctttg aatccttcct gtttcaactc ccaagccaat ttctgtgttc
     1021 tctgttttgt agccgcaaaa acaattgtct gttttttgtc cctgctccta attaagttgc
     1081 agagatgttt aaatttttct ctttcctgta caattaaata agattgatct attgtatcaa
     1141 gacttaattc ttcttcattg agcctgattt gctgaatgtc cttcatatat tcttgagcca
     1201 acctcaatat ctcaggtggc atagttgcag aaaacaagca tgtttgccta tcgtcattca
     1261 catagaacaa aatgaacttt atgtcatcga taaaacccat atctagcatt ctgtctgcct
     1321 cgtcaagaac aacgtacttc acattctcaa gctgaatcga accgtgtttc acatgatcaa
     1381 tcaatctacc aggagttgca actactattt gtactcctcg tctcaattga tcatgttgaa
     1441 ggttaatact ctgtcctcca tatatggaca cggttctaat gccagtatat tttgcaaact
     1501 tgttgatctc agttgttacc tgcattgcta gctcccttgt aggcacaagt ataagtgctt
     1561 gaatggggcc attacgcttt accttcatta atatcggtaa ggaaaaagca gctgtcttac
     1621 cagttccagt atgcgcctgg cctacaacat ctataccctt taaaagaaat ggtatagctg
     1681 cctcttgaat aggaaatggc gcttcaaatt tattttcttt gagtgcccta tttatttcag
     1741 cactcattcc taactcttga aatgtctttg tcaatttatg ttttcacttt gaaatatcta
     1801 caaaagccac ggaagacaag agaagtaatt ttatttactt aacaaatccg ccgtaaacgt
     1861 tttgtttgat tactgtataa attacagaga tataaggcat gcggaattaa atactttatg
     1921 tattgtcaaa ggttacttat atattgaaaa gttaccaaaa tacagaggag aaagtgcttg
     1981 ctttcagtta agttcagagt cggccaaaca gctaatcctt accaagaccc agaaagaaac
     2041 taatttaaga tagcgatgta agctgccagc tagtgttaaa gctcttgaca ttctttacaa
     2101 gaagaatatt atttatacca acaattagat ttagcggtca tggaggagga tatgattagt
     2161 tggtttctaa agtacttatt acaagtggaa cccaacagac cgctttggat gaccaggaac
     2221 taaaagaagt aatcaatgct atcatctatg ctagtaacca atctgaacaa agcaaaaatt
     2281 tcgagcaggt aaaaaggtac aaggcattac tagctaagtt agaaccatta agcaagtaaa
     2341 agtaggttgt tgtatttctc ttctattctt tgtaatataa ctcgattatc aaaaactcga
     2401 agaagatctt ggcgcaggag caagaatcct gccctgatgg ataaaaggag tttgattttt
     2461 cctcctgcat ggagatagtt gcaacgtagc gtcataagcc taaccccttt tgttttctga
     2521 ggcagatttc ttg
//
LOCUS       DATABJ010000260         2318 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1076003, whole genome shotgun sequence.
ACCESSION   DATABJ010000260 DATABJ010000000
VERSION     DATABJ010000260.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2318)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2318)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2318
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1076003"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1307)
                     /gene="argS"
                     /locus_tag="VHF44_04200"
     CDS             complement(<1..1307)
                     /gene="argS"
                     /locus_tag="VHF44_04200"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEX2124789.1"
                     /translation="MTFRLLINEIRQAVANSLINLNYDHLDFEISESPRKEFGDLSCN
                     IAFLLSKALRRRPVDIANEIIEKELKPYIEKKKAMNSRSFILSVESHPSGYINFRANL
                     SNLASWTLNEVLKNSKYGFNDLGNGQRVIIEHTSVNPNKALHVGHMRNVVIGDILFRI
                     LRATNYEVIVLNYIDDSGLQVADIVVGFRFAGLPVYPEDKNIKFDQYCGDEVYVKVNE
                     MYKHDKYLEEKRRWVLKEIELGTSEIAKFASEITMLVLKDQLKTCWRMKAHYDLLNFE
                     SHIVTSRLWSKTFEMLKEKRIATLQTEGKNKNCWVIKPENEEEKVIVRSDGTATYIAK
                     DIPYAAWKLGLVEDPFFYYKFADQWDESVLWATTLKFDAGSPRHPSFNSGEKVITIID
                     SRQARLQRIIATVLSHLRISNDRYYHLAYEAMTLSADTAKSLG"
     gene            complement(1285..2013)
                     /locus_tag="VHF44_04205"
     CDS             complement(1285..2013)
                     /locus_tag="VHF44_04205"
                     /EC_number="3.1.3.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008967 - phosphoglycolate phosphatase
                     activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycolate phosphatase"
                     /protein_id="HEX2124790.1"
                     /translation="MKTIKVFAIDIDGTLTENGGGMIHLPAIDSLRYLERLGYKVIYV
                     TGRSSLEAYVLAVFGGTTKIAVGENGGALTLSPQEHVLLADKEKCMKGYEVLKKNIDG
                     VKIKPVFNRLTEIVLFRTFDIAEGQKILDDNKLDLYLSDSRYAFHINERGVDKATGFK
                     RVLDILAVAPSETVAIGDSQTDIPLFDLCGYSVALNHAENHVKNRARHVVSGKEGEGL
                     IDAIEYITLNYFGETTAIDISASN"
BASE COUNT          719 a          468 c          332 g          799 t
ORIGIN      
        1 aatcctaggc ttttggcagt atcagcacta agagtcattg cctcatatgc aagatgataa
       61 tatctgtcat tgctaatccg taaatgcgac aggaccgttg cgatgattct ctgtaatctt
      121 gcttgtcttg aatcaattat cgtaataacc ttttcacctg aattaaaact aggatgtctg
      181 ggactaccag catcaaactt taaggttgtt gcccaaagaa cagattcatc ccattggtca
      241 gcaaatttat aataaaagaa aggatcctct actagtccta atttccatgc tgcgtatggt
      301 atgtctttag caatgtaagt tgcggttcca tcgcttctga caatcacttt ttcctcttca
      361 ttctctggct taatgaccca acaatttttg ttttttcctt cagtttgtag agtcgcgatg
      421 cgcttttctt ttaacatttc aaatgtttta ctccataatc tagaagtaac aatatgtgac
      481 tcaaaattta agagatcata atgagctttc atcctccaac atgtctttag ttgatccttt
      541 aaaaccagca tagtaatttc tgaagcaaat ttagcaatct ctgatgttcc aagttcaatc
      601 tccttaagaa cccatcttct tttttcttca aggtacttat catgcttgta catttcgtta
      661 acttttacat atacttcatc gccacagtat tgatcgaact ttatattttt atcctcggga
      721 taaacaggaa gaccagcaaa tctgaatcca acaacaatat ctgcaacctg taaacctgaa
      781 tcgtcaatat aatttaaaac tattacttca tagtttgttg ctctcaatat cctaaatagt
      841 atgtcaccaa taaccacgtt tctcatgtgg cctacatgga gagccttgtt tggattgaca
      901 ctagtatgct caattataac tcgttgacca ttaccaaggt cattaaaacc gtatttagaa
      961 tttttaagta cttcgttaag agtccaagaa gctaaattac taagatttgc tctgaaatta
     1021 atgtaacctg aagggtgaga ttcaactgaa agaataaaag atcttgaatt cattgctttc
     1081 tttttctcta tatatggttt tagctctttt tcaatgattt cattcgcaat atcaacaggt
     1141 cttcgcctta gagctttact aagtaaaaat gctatattgc agctgagatc tccgaattct
     1201 tttctgggtg attcagatat ttcaaaatct aggtgatcgt aattcaaatt tataagacta
     1261 tttgctactg cctgacgaat ttcattaatt agaagccgaa atgtcaattg cagtcgtttc
     1321 tccaaaataa tttaatgtaa tatattcaat tgcatcaata agaccctcgc cttctttgcc
     1381 agacactaca tgtctagctc ggttttttac atggttttcg gcatggttga gggctacgct
     1441 ataaccacag agatcaaata gaggaatatc tgtctgactg tcgccaatcg caactgtttc
     1501 tgatggtgct acagccaaaa tatctaatac tcttttaaat cctgttgcct tgtcaactcc
     1561 tctttcgttg atgtgaaaag catacctact gtcgctaaga tacaagtcta acttattgtc
     1621 atccaagatt ttttgcccct ctgcaatatc aaatgttcta aataatacaa tttctgtaag
     1681 tctattaaaa acaggtttaa tttttacacc atctatattt ttctttaaaa cctcataacc
     1741 tttcatacac ttttccttgt cagccaaaag tacatgttcc tgaggagata aagtcaatgc
     1801 gccaccattt tcaccgacag ctatcttagt tgtgccacca aagactgcaa ggacataagc
     1861 ctccagcgat gatcgccctg taacatatat tactttatat ccaagtctct caagatacct
     1921 tagactgtca atagctggaa gatgtatcat gccaccacca ttttctgtta atgtaccgtc
     1981 aatatcaata gcaaatactt ttatcgtttt caagttatga gagcgaaact aaatttttgc
     2041 atataaatgt tctaaaatac aacctcaagt cgctagttct ctatagaatt catactaatg
     2101 tatctcacaa accaaagttg cctagatgtc gtataaatcc acatgcgaaa tacctagaat
     2161 ataaccaaga aaaaataata aatataatca tatatccact cttctttcta actgatttat
     2221 acgactatta ctatttataa gatttcagat gatgaacata atttttctca aaaacattat
     2281 tcatttgatt tttttcaaga ctagtatgtg ataaacat
//
LOCUS       DATABJ010000261         3918 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1946316, whole genome shotgun sequence.
ACCESSION   DATABJ010000261 DATABJ010000000
VERSION     DATABJ010000261.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3918)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3918)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3918
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1946316"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(173..1651)
                     /gene="argH"
                     /locus_tag="VHF44_04210"
     CDS             complement(173..1651)
                     /gene="argH"
                     /locus_tag="VHF44_04210"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR00838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004056 - argininosuccinate lyase activity
                     [Evidence IEA];
                     GO_process: GO:0042450 - arginine biosynthetic process via
                     ornithine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEX2124791.1"
                     /translation="MYRSRPRGTLDDDTLKFLSSIDIDQGILNYDIIGSEAHSMMLYD
                     IGILSMPELKKILRALEDIKKNPSQLKTDTFEDIHESLEAFVIKQAGIDAGGKMHTGR
                     SRNDQVILDIRMKVRDHINNICLAIIDLIDSLLEKATENKESVMPMYTHLQQAQIGTF
                     SHYLLSYSDALFRDMDRLYITYGRNNQSPLGACAIGGSTINIDRRTTAVFLGFDGLVR
                     NSVDATSSRDALIEYTSGISIFMTTLSRLAEDFILWSTAEFGYLEISDEYSSTSSAMP
                     QKKNPDPLELVRAKASSVLGNLVSILSIVKALPSGYSRDLQELKPHLWRASSTALEAV
                     KIVNRVVKSIDVRKEKMQESANNSYALSIDIAEQLVVKKGIPFRIAHKLVGSLVEKAI
                     RKNKTQVIMLEEQDIKEVLEKIELNLQPNELMHLIQEVTPQRALELRISSGSPNPKEQ
                     VEMIILSRRRLAGYKEGVPKRKKYVDSAFENLTRTVENYLKD"
     gene            1844..2164
                     /locus_tag="VHF44_04215"
     CDS             1844..2164
                     /locus_tag="VHF44_04215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-sulfur cluster assembly protein"
                     /protein_id="HEX2124792.1"
                     /translation="MSQDIQQTRRLIFDELTKIVDPEIGVSIMELELVDKVDINAANV
                     DIDLHLTSPFCPAVFGFKIAQDVRDNVYKVQGIEGVKVNVSNHFMADAINKQVNESKL
                     PPKS"
     gene            complement(2380..3231)
                     /gene="sdhB"
                     /locus_tag="VHF44_04220"
     CDS             complement(2380..3231)
                     /gene="sdhB"
                     /locus_tag="VHF44_04220"
                     /EC_number="1.3.5.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase iron-sulfur subunit"
                     /protein_id="HEX2124793.1"
                     /translation="MMEIIKKIGMIRNRNVKDDDDNNNNRKSALRDKVVIKVFRANRI
                     KGDPVRYDSFEVPVQRWTTVLDALIYAKSNRDSSIGIRYSCRMASCGSCGMKINGIPR
                     LACYTKISELEGSTITCEPLANFPHIRDLVTDFSQFFNHHKEMKPYIHNENADIIDRE
                     KLSEFKQSPEDVDKYLQFSYCIRCGLCYSACPTVATDTKFPGPQALSQAYRYYADTRD
                     NDNKERINIVDDRHGIWRCHFAGSCSVVCPKGVDPALGIQLLRGHLMGLSKNEKKIAK
                     LENRSRN"
     gene            complement(3234..3605)
                     /locus_tag="VHF44_04225"
     CDS             complement(3234..3605)
                     /locus_tag="VHF44_04225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="succinate dehydrogenase"
                     /protein_id="HEX2124794.1"
                     /translation="MMETRRIILRESQIMKIHYITAIAALLVVAVHILMRLIMPYNMS
                     LEYENVVVNYHNIPYALLLESILILIAIHGFNGLRVILLEFRQNKIWENGITVFTIAA
                     MIAIIAYGTRTIVIANQLGLK"
     gene            complement(3624..>3918)
                     /locus_tag="VHF44_04230"
     CDS             complement(3624..>3918)
                     /locus_tag="VHF44_04230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="succinate dehydrogenase"
                     /protein_id="HEX2124795.1"
                     /translation="SSLTRGPDAWNAMLELTQTQWGHLFLILVIGTSTFHSANGIRLI
                     FTHGGKGLGKAGRPDYPYDAISLNYRQKSGIWVALILSALAMLYGSSVLFGGE"
BASE COUNT         1174 a          756 c          637 g         1351 t
ORIGIN      
        1 aaaaattatc caagcgaaat ctatattata cgcttttgat gttatcgtct gttctcagta
       61 ttttttgata atcaatatta tatagatttg attcaatgca attttatctc taagctatct
      121 acaaaagagt tatcatcata aaggtctttg ttattctcat tgagaattta gtctagtctt
      181 ttaagtaatt ttcaacagtt ctcgtaaggt tctcaaaagc agaatcgacg tacttttttc
      241 gttttggaac tccctcttta taaccagcga gcctacgcct agaaaggata atcatttcta
      301 cctgttcttt tggatttggg gaaccggaag agattcgtaa ctcaagagct ctttgaggag
      361 taacttcttg aatcaaatgc attaattcgt ttggttgcaa atttaattca attttttcca
      421 acacctcctt aatatcttgt tcttctaaca ttataacctg ggttttattt ttgcgaattg
      481 ctttctcaac aagagatccg actagtttat gagcaatacg aaatggtatt cccttcttca
      541 caactaattg ttctgcaata tcaattgata gagcatagct attatttgct gactcttgca
      601 ttttctcttt gcgaacatca attgatttta cgactctgtt tactattttt acagcttcaa
      661 gagcagtact tgatgctctc catagatgag gttttagctc ttgcaggtct ctgctgtaac
      721 ccgatggaag agcttttaca attgagagga tcgataccaa attaccaaga acagaggatg
      781 cttttgccct gacaagttct aaaggatctg gattcttttt ctgcggcatt gcactagatg
      841 tggagctata ttcatcagag atctccaagt atccaaactc agcagtcgac cagagtataa
      901 aatcttcagc caatctactt agagtagtca tgaatattga gatccctgaa gtatactcta
      961 taagcgcatc tcgtgaacta gttgcgtcaa cagaatttct tactaatcca tcaaaaccta
     1021 agaaaacagc agttgttctt ctatcaatgt taattgttga tccacctatt gcacatgcgc
     1081 ccagcggtga ttggttgttt cttccatatg taatataaag tctatccata tctctaaaaa
     1141 gcgcatcgga ataggacaaa agataatgag aaaaagttcc tatctgagct tgctgaagat
     1201 gagtatacat gggcattaca ctttctttat tctcggttgc cttttccaat agagaatcaa
     1261 tcagatcaat aattgctaga caaatattgt taatatggtc acgcaccttc attctaatgt
     1321 caagtattac ctgatcattt ctcgatcttc cagtatgcat tttaccgcca gcatcgatgc
     1381 cagcttgttt tatcacaaat gcttctagtg attcatgaat atcttcaaaa gtgtctgttt
     1441 ttagctgtga aggattcttt ttaatatcct ccagagctcg caagattttc tttaattctg
     1501 gcatagacaa aatgccaata tcatacaaca tcatagaatg tgcttcgctt cctattatgt
     1561 cataatttaa tataccttga tcaatatcta tggaggagag aaacttcaaa gtgtcatcat
     1621 cgagtgtacc tctcggtcgt gaccgataca taaatagtct aataaaatag ttttatttta
     1681 agatattata tatgacgata tagccaatgc cattgttgaa aaaatcaaaa tctgttaata
     1741 atgctataat tttgattcta tatttattta ggatccacgg accgttcatc ttttccaatt
     1801 ctgtgcaata gttatatatg gtttgtacaa atttaatgtt gtcatgagtc aggatattca
     1861 gcagactcgt agattaatat ttgatgaatt aaccaagatt gtggatccag aaattggtgt
     1921 ctctataatg gaattagaat tggttgacaa agtagatatt aatgcagcga acgtagatat
     1981 cgatttacac ttaacaagcc cattctgtcc cgcagtattt ggtttcaaga ttgctcaaga
     2041 tgtcagagac aatgtctata aagttcaagg gattgaaggt gtcaaagtca atgttagcaa
     2101 ccatttcatg gctgatgcga taaataagca agtaaatgaa agtaagcttc cacctaaatc
     2161 ctaaaatttt taaattactc caaatttagt ctgaatgagc ataaagttaa cgttatcatt
     2221 tccaaaaagt attttagact agatattaat ttgtttcatc acagactcga tatcagaatc
     2281 tgattaattg atcctatgat aagcctgtat tttaatctcc ccacatatag tgaagtagca
     2341 gagataaaaa ataaaattgt tttgaccttc ctttttgtat caatttctac ttcgattctc
     2401 cagttttgct attttttttt cattttttga aagtcccata agatgacctc gtaataactg
     2461 aattcccaat gctggatcta caccttttgg acaaactaca ctacatgagc cagcaaaatg
     2521 acatctccaa ataccatgtc tatcatctac aatattaatt cgctctttgt tatcattgtc
     2581 ccgggtatct gcatagtatc tgtaagcttg tgatagagcc tgaggaccag ggaattttgt
     2641 atctgttgct acagtaggac atgcagagta acataaccca catctgatac aataggagaa
     2701 ctgtaaatat ttgtcaacat cttctggact ttgtttgaat tcggataatt tttccctatc
     2761 tattatatct gcgttctcat tatgtatata aggcttcatt tctttgtgat gattaaaaaa
     2821 ttgtgaaaag tctgttacaa ggtcacgaat atgagggaaa tttgcaagag gttcacaggt
     2881 gattgtacta ccctctaact ctgaaatctt tgtgtaacaa gcaagtctag gaattccgtt
     2941 aattttcatt ccacaagagc cgcatgaggc cattcgacat gaatatctta ttccaatgct
     3001 actgtcacga ttgctctttg cataaataag agcatcaagg acagttgtcc aacgctgtac
     3061 tggcacctca aaggaatcat atctgacagg atctcccttg attctgttag cacggaatac
     3121 ttttatgaca accttatcgc gaagtgcact ctttctatta ttattgttat catcatcgtc
     3181 ttttacattc ctatttctta tcattcctat ttttttgatt atttccatca tttctacttc
     3241 aatcctagct gattagctat tactattgtt ctagtaccat atgcaattat ggctatcatc
     3301 gccgctatag tgaatactgt aataccattc tcccatatct tattctgtcg gaactcaagc
     3361 aatatgactc ttaagccatt aaagccatgt attgcaatga gtataagtat cgactcaaga
     3421 agaagtgcgt agggaatatt atggtagttt acgaccacat tttcatactc caggctcata
     3481 ttatatggca ttatcagacg catcaagata tgcacagcca ctacaagaag tgccgctatt
     3541 gctgtaatgt aatgtatctt cattatttga ctttcacgca ggattatcct tcttgtctcc
     3601 atcattacct ctccttttat tttctattct ccgccaaaaa gtacacttga tccgtacagc
     3661 attgctagag cggataatat taatgcaacc catattccag acttctgccg atagttaagt
     3721 gatatcgcat cataaggata gtctggtctt ccagcttttc ccaatccctt accaccatgg
     3781 gtaaatatca atctaatacc gttagcagaa tggaacgtac ttgttcctat caccaatatt
     3841 aagaaaagat gtccccattg tgtttgagtt aactccagca tagcattcca tgcgtctggg
     3901 cctcttgtta gagaactt
//
LOCUS       DATABJ010000262         1999 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2105782, whole genome shotgun sequence.
ACCESSION   DATABJ010000262 DATABJ010000000
VERSION     DATABJ010000262.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1999)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1999)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1999
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2105782"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            4..117
                     /locus_tag="VHF44_04235"
     CDS             4..117
                     /locus_tag="VHF44_04235"
                     /inference="COORDINATES: protein motif:HMM:NF024773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEX2124796.1"
                     /translation="MQEGIYNEEAERKAKENGMDVVYNRCMMAEHKRLFSK"
     gene            complement(465..794)
                     /locus_tag="VHF44_04240"
     CDS             complement(465..794)
                     /locus_tag="VHF44_04240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MTH1187 family thiamine-binding protein"
                     /protein_id="HEX2124797.1"
                     /translation="MSENTIHAEISVIPIGISSQTTTSMSKEIAAAFDAIQKIKGLKT
                     MLTPMGTQIESNNFANILKAIEVAHEVVRTAGAKRIMSTIRIDERLDKSISLEEKVES
                     VMEKIGK"
     gene            917..1723
                     /locus_tag="VHF44_04245"
     CDS             917..1723
                     /locus_tag="VHF44_04245"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124798.1"
                     /translation="MNIQEFISSLPQSLVKNEDISIPDDVIRKLFRLADLCKTDVFFA
                     VGCGNNNAVKIAAKEFKVKRSVGIEIRKTLADKARKKIIRMKNAEIINEDISKSSFSD
                     ATVILFWFTDIDYIQPIIEKFETELKNGARVITAWSPPDLMLPTKTEFPFFVCQKPFK
                     YAKNIKEQIEAIYGNPCIDFTASWLLAEKYIDALEVVSAKYHRFVNIFQSMIIWINAW
                     NMGVACEEEIPPPVQTYIGILKTFFNIDLTDMISKKPIKLGNNNKEKDIP"
     gene            complement(1797..>1999)
                     /locus_tag="VHF44_04250"
     CDS             complement(1797..>1999)
                     /locus_tag="VHF44_04250"
                     /inference="COORDINATES: protein motif:HMM:NF013175.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124799.1"
                     /translation="NVHILEPREGIGGHCLPKDTKMFLQSSKSIKSKILQAAIEVDQD
                     YRRYREAREIKGIDQNSFLQSI"
BASE COUNT          660 a          318 c          311 g          710 t
ORIGIN      
        1 tggatgcaag aaggcatcta taatgaagaa gcagaaagaa aagcgaaaga aaatggaatg
       61 gatgttgtgt ataatagatg catgatggca gaacataaac gtctatttag taaataagat
      121 tattctatcg atcaagaaga cataaaagct ttgactaaga tttctgattc ttactaaagg
      181 acaattagag tgaatgttgt ttattgattt ttcttacccc tagcattgta agtctaacag
      241 atatcccata tcaaaaatgc aacaattttc attgtttgga ctgttcttgc atgcagtaat
      301 aataatatct tgggtttttt ataaggacaa taaagtcagt ctgcttgatc caaattaatc
      361 tacacgataa taggatatgc tcattaatca tttatacttt tgttcaagca taattatgga
      421 tagtatatgc taatttctct ttgttctttt ccttttcttt attctcattt accaatcttt
      481 tccataactg attctacctt ttcctctagg cttattgatt tgtctaatct ttcgtctatt
      541 ctaattgtgg acattattcg ttttgcacca gctgttcgaa caacttcgtg agcaacttca
      601 attgctttta gaatattggc aaaattgttt gattcaatct gtgttcccat aggagtaagc
      661 atggtcttta gaccttttat cttctgaata gcatcaaatg cagcagcaat ttccttactc
      721 atactagttg tcgtttgcga acttatccca atcggtataa cgcttatctc tgcatgtatc
      781 gtattttcac tcattaccta gtgcttatac tgtctctaag ctagaataat gttagcatca
      841 tacctccatt atcattctgt tgttgcttta tctttgcttt aatttttata atcgttaaag
      901 aataaaaaaa ttagcattga atattcaaga gtttatatct tcattgcctc aatcccttgt
      961 aaaaaatgaa gatatttcga ttcctgatga tgtaataaga aaattattta ggcttgccga
     1021 tctctgtaaa accgatgttt tctttgctgt gggatgtgga aataataatg ctgttaaaat
     1081 tgcagctaaa gagttcaaag taaaaagatc tgttggaata gaaatcagaa agaccttagc
     1141 ggataaggca agaaaaaaaa ttattagaat gaaaaatgca gagataatta atgaagatat
     1201 tagtaaaagt tccttttctg atgctactgt catactattt tggtttacag atattgatta
     1261 tattcaaccg ataatagaga agtttgaaac tgaattaaaa aatggtgctc gagttataac
     1321 agcatggtct cctcctgacc taatgctccc aacaaagacg gaatttccat tttttgtttg
     1381 tcaaaaacca ttcaaatacg ctaagaatat aaaagagcaa atagaagcaa tctatggaaa
     1441 tccatgtatt gattttactg catcgtggct actcgctgaa aaatatatcg atgcattaga
     1501 ggtcgtgtcg gccaagtatc atagatttgt aaatatattt cagagtatga taatttggat
     1561 aaatgcgtgg aatatgggag tagcctgtga agaagaaatt ccaccacctg tccaaacata
     1621 tataggaata ttgaaaactt tctttaacat agatttgact gatatgattt caaaaaaacc
     1681 cattaaatta ggaaacaaca ataaagaaaa agatatacct taacaataaa ttctactcaa
     1741 tctaaaattt ttcttactat cctattatgt cactcttatt taatcttatg ataatatcaa
     1801 attgactgta ggaaagaatt ttgatctatt ccttttattt ctcgagcttc tctatatcgt
     1861 ctataatctt ggtctacttc aattgctgct tgtaatatct tacttttaat agactttgat
     1921 gattgtaaga acattttagt atcctttggt agacaatgcc caccaattcc ttctcttggt
     1981 tcaagaatat gtacattcc
//
LOCUS       DATABJ010000263         2551 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1076284, whole genome shotgun sequence.
ACCESSION   DATABJ010000263 DATABJ010000000
VERSION     DATABJ010000263.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2551)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2551)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2551
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1076284"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(305..>2551)
                     /locus_tag="VHF44_04255"
     CDS             complement(305..>2551)
                     /locus_tag="VHF44_04255"
                     /inference="COORDINATES: protein motif:HMM:NF015213.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0016020 - membrane [Evidence IEA];
                     GO_component: GO:0033573 - high-affinity iron permease
                     complex [Evidence IEA];
                     GO_function: GO:0005381 - iron ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0034755 - iron ion transmembrane transport
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FTR1 family protein"
                     /protein_id="HEX2124800.1"
                     /translation="GDNDMAFAHSYIPHSAIFPSIKSQLNDINSQSALRLESLLTDLP
                     IIIKTFEEADSKGKIKNDLTEIEELLDNISNQSIGKDLLSNKIMIAHTIVFLLRDTGK
                     SYQLSNAAVAGPIDQQQLTDNNKKISKVDYENALGLVNVSKSNYNKISDSLDERRKNE
                     INSFFRQIENSISQKTDQESVLRLIAAIERDLSEELSLSEGSERAGEHTEYFSTIRTL
                     LSNVITEVKENGDYKKADKNAITAYLDNYEYLEAPIEKHDPQLMVDIEIDMRETLRQM
                     LRERESPENLESFINGILEKIDIAEDLLKNDPSFNQLQESGNTSANSGITAFTDIQDL
                     SKGFGAYTGERKEMGEAQDSAKEAVRNNIDQIRKKLDEMLLQYKAERYNEALTTSRSA
                     YLDSYENIEIPLRPIDPDFTLEMEIKFAELRNLIQSQSPYEEIESKTVEIRNGLDESE
                     RLVSGTGIVAPTIAFSTSFSIIFREGLESALIIGAILTYLEASRNQRFKKHIYYGIVL
                     AAAATGVTWFIAEYIIQISGASRELIEAIAGISAVAVLFWVSFWVLNRIETKKWIEFV
                     KAKVWKATTTGSIMVFVMLSFFTVYREGFETVLFYQAMLSFAKYMEWYVIAGMIFGLT
                     IIVGIVFLIRKLGKKLPLRVLFGLTMGVGAYMSIAFMGNAIREFQEVGYISTTHMFGT
                     IPRLDINLATMTGIHPTLETIVAQFILLSIYIVGSLYVLIIQPRRKKKIETVRKSMAD
                     VERKKVHD"
BASE COUNT          751 a          476 c          401 g          923 t
ORIGIN      
        1 agcaagcata cctagcatat catctttgaa gatcaactat cagaagatgg tttcattaga
       61 gtccttttaa ataacaaatg catctcaaat cacattaatt ctaaagatat gttaggtcta
      121 aatactcatt atcgaaacta acatggatat cctagagttt atgataactc ccaaaatcaa
      181 gtaatatatt gaacaatctc tattttcagt attgacatca atttggcagc gtttctctat
      241 aggtggagtt tctcggttta tcaacgaatt aggaggacca aactaatctt acttgtacgc
      301 tctattaatc atgaactttc tttctttcta catctgccat agactttctt actgtttcta
      361 ttttcttctt tcttcttggc tgaattatta gcacatataa tgatccaaca atgtatatag
      421 ataatagaat aaactgggca acgattgtct cgagcgttgg atgaattcca gtcattgttg
      481 caaggttgat atcaagacga gggatagttc caaacatatg ggttgtagaa atgtatccta
      541 cttcttggaa ttctcgtatt gcgttaccca taaatgctat tgacatataa gctccaactc
      601 ccatagttaa tccaaacaat actcttagag gcaatttttt acctaacttt cttataagaa
      661 atactattcc cactattatt gtaaggccaa atatcattcc agctataaca taccattcca
      721 tatatttggc aaaagataac attgcctgat aaaacagaac ggtttcaaac ccttctctat
      781 aaacggtaaa gaaagaaagc atcacaaata ccattatact tccagttgtt gttgccttcc
      841 aaacctttgc tttcacgaat tcaatccatt tctttgtttc aattctattg agaacccaga
      901 agctaaccca aaataacact gccactgctg aaataccagc aattgcttca attaattctc
      961 tgctagcacc agatatctgg ataatatatt ctgcgataaa ccaggttact ccagttgcag
     1021 cggctgcaag tactatgcca tagtaaatgt gttttttaaa gcgctgattt ctagaagctt
     1081 caagatatgt aagtattgca ccgatgatca atgcagattc caatccttct ctaaaaataa
     1141 tagaaaatga tgtcgagaat gctatagtgg gagcgacaat gccagtaccg gatacaaggc
     1201 gctctgattc atctagaccg tttctaattt ctactgtctt tgattctatt tcttcatatg
     1261 gtgactgtga ttgaatgagg tttcgtaatt ctgcaaattt tatttccatt tcaagtgtaa
     1321 aatctgggtc tatcggtcgt aaaggaatct cgatattttc atagctatct aagtatgcag
     1381 agcgagaggt tgttagagct tcattatatc tttctgcttt gtattggaga agcatttcgt
     1441 caagcttctt tcttatctga tcgatgttgt ttcggacagc ctcctttgca gaatcctgtg
     1501 cttcgcccat ttcttttctt tcgcctgtat aagctccaaa acccttgctc agatcttgaa
     1561 tatctgtaaa agctgttatt cctgaattag cactagtatt accactttct tgtaactgat
     1621 tgaaagaagg atcgtttttc aaaagatctt ctgcaatatc aattttttca agaattccat
     1681 tgataaaaga ctctaaattt tcaggagatt ctctttctct gagcatttgt cttagtgttt
     1741 ctctcatgtc tatttcgatg tcaaccatta gttgtggatc atgcttttct atcggagctt
     1801 ccaagtattc ataattatct aagtatgcag ttattgcatt cttgtcagct ttcttataat
     1861 ctccattttc ctttacttca gtaattacat tagatagtag agttcgtatt gtagagaaat
     1921 attctgtatg ttcccctgca cgttcgctgc cttcactcaa tgaaagctct tctgataagt
     1981 ctctttctat tgcagcaatt aaacgtaaaa ctgattcctg atctgttttt tggctaatag
     2041 aattctctat ttgtctgaag aaagaattaa tctcattttt ccttctttca tctagagaat
     2101 ctgatatttt attataattt gatttggata cattaaccaa gcctagtgca ttctcataat
     2161 ctaccttact gatttttttg ttattatctg ttagttgttg ttggtctatt ggccctgcta
     2221 cagcagcatt agatagttga taggatttac ctgtatccct taaaagaaaa acaatagtat
     2281 gtgctatcat tattttgttt gataaaagat ccttgcctat agattgattg gaaatattgt
     2341 ctaaaagttc ttcaatttct gttaaatcat tttttatttt gccttttgaa tctgcttctt
     2401 caaaagtctt tataataatg ggtagatctg ttaataaaga ctcaagcctt aatgccgatt
     2461 gggagttaat atcattcaac tggctcttaa tggagggaaa tattgcagaa tgtggaatat
     2521 atgaatgagc aaatgccata tcattatcgc c
//
LOCUS       DATABJ010000264         2105 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1947380, whole genome shotgun sequence.
ACCESSION   DATABJ010000264 DATABJ010000000
VERSION     DATABJ010000264.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2105)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2105)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2105
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1947380"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..988)
                     /locus_tag="VHF44_04260"
     CDS             complement(<1..988)
                     /locus_tag="VHF44_04260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005507 - copper ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="multicopper oxidase domain-containing protein"
                     /protein_id="HEX2124801.1"
                     /translation="MNKVAMAGIVAAVLIAGFVFTPFSSGGIQSATAQVQPQPTGVTK
                     NVFLIADEVEVQVAPDNALHPGGVRYNAMVWNGTVPGPVIAVDQGDTLNVTIRNDGQV
                     IHSMDFHAAIGPSQVISGNIAPGETKSWTLQANTPGAFMYHCGADGLFGVWEHIANGM
                     VGAIVVHPQNEKPAKEFYLSFGEIYSDTEDASRAGTFDLQKFLNNNASLVLTNGMAHK
                     YVPAIGEEVKVELNPQAQPFKVKPGELTRWYILNYGPNTDTAFHFISGMLDSVRDGAV
                     KNRLGTTLLNDETYNIPVGSASVIETTFPEEGVYVGVDHDMKDVYKGGALAVI"
     gene            1202..1633
                     /locus_tag="VHF44_04265"
     CDS             1202..1633
                     /locus_tag="VHF44_04265"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124802.1"
                     /translation="MFQNKRSIFCSLCNKELKYKYKPAKEWNIEGYLCSDCHIDKTKE
                     FIVRQQQYEEIPDNCLVCNKELKSESEKKKPRWQWNIESGSYLCNDCFAKKDLSYEKK
                     RNFCSICNQKMGFIRYNPKPKWKIDGQLCKHCWDKRNKQEI"
     gene            1642..1863
                     /locus_tag="VHF44_04270"
     CDS             1642..1863
                     /locus_tag="VHF44_04270"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124803.1"
                     /translation="MFKKNNCETCGKKYRKIEELMQHKQVIHGKDLLYHCKKCNMSFE
                     GMEQMRDHTKKFHSYNNIIKQRNIKKKID"
BASE COUNT          706 a          378 c          372 g          649 t
ORIGIN      
        1 caatcacagc aagtgcaccg cccttgtata catctttcat atcatggtca acaccgacat
       61 aaactccttc ttctggaaat gtggtctcaa taacagaagc tgagcctact ggtatgttat
      121 atgtttcatc atttagcaat gtggtaccta atctattctt gacagcacca tcgcgtactg
      181 agtcaagcat acctgagatg aagtggaatg ctgtgtcagt gttaggacca tagtttagaa
      241 tataccatct tgtcaattca cctggcttga ccttaaaggg ctgggcctgc ggattgagct
      301 caactttaac ttcttcaccg attgctggta catatttgtg agccatgcca ttggtcaaaa
      361 caaggcttgc attgttatta aggaattttt gcaaatcaaa tgttcctgct ctagacgcat
      421 cctctgtatc gctataaatt tccccaaatg acagatagaa ctcttttgct ggcttttcat
      481 tctgaggatg tactacaatt gcaccaacca taccattggc aatatgttcc catacaccaa
      541 ataatccatc agcaccgcag tgatacatga atgcacctgg cgtattagct tgcaatgtcc
      601 atgacttcgt ttcacctggc gctatattgc cagatatcac ttgactagga ccaatggctg
      661 cgtggaagtc catgctgtgt attacttgac cgtcatttct tattgtcacg tttaaggtat
      721 ctccctgatc aactgctatt actggacctg ggactgtacc attccatacc attgcgttat
      781 atcttactcc gcctggatga agggcattat caggagcaac ttggacctca acttcatctg
      841 caattaaaaa tacatttttt gtaacgcctg ttggttgcgg ttgtacttgt gctgttgcgc
      901 tttggattcc acctgaacta aaaggagtaa aaacaaatcc tgctatcaga acagccgcaa
      961 caataccggc catagcgact ttattcatta tctcgaggat attttatgcc gtattaaaac
     1021 ttttaaccat ttaaattata aatttcagta ttatatatta tagatataac tggatattat
     1081 aatagaatgt actataaact aatcattttg acaagatcct aaaaactatg attaagtcgc
     1141 ctctaaatac attaacaact atcatatagc gcattagtta cttcttttat attacttgag
     1201 gttgtttcaa aacaaaagga gcatattctg ttctctttgt aacaaggagc ttaaatataa
     1261 atacaaacca gccaaggaat ggaatataga aggctattta tgttcagatt gtcatatcga
     1321 caaaacaaag gaatttatcg taagacaaca acaatatgaa gaaattccag ataactgttt
     1381 ggtctgtaac aaagagctta aatcagaatc agaaaaaaag aaacctagat ggcaatggaa
     1441 tatcgagtca ggcagttact tatgtaatga ttgctttgca aagaaggacc tgagttatga
     1501 aaaaaaacgg aatttttgtt ctatctgcaa ccaaaaaatg ggatttatac gttataatcc
     1561 caagcccaaa tggaagatag acggacagtt atgcaaacat tgctgggata agagaaacaa
     1621 gcaggagatt taacgacggg tatgtttaag aaaaataact gtgaaacctg tggtaagaag
     1681 tatagaaaga ttgaagaatt aatgcagcat aagcaggtca tacatggaaa agatcttcta
     1741 tatcactgta agaagtgtaa tatgagtttt gaagggatgg aacagatgcg tgatcatact
     1801 aagaaatttc attcatacaa taacattata aagcagagaa atattaagaa aaaaattgat
     1861 taaataccta ctgagaatat tcgaaaacta ctgcatagtc caatggataa ttgattgctg
     1921 agtctcaaca tattccggct ctgattaaaa ttatatatca gattaataac tatgcatatg
     1981 aagtttttga taatatttga tcttttataa ttcgtaatac aatcaaaagt gtatattcag
     2041 tatttggtta tcaagttttt taatgtttat gcaggtacaa tttaataaca atccataata
     2101 tttaa
//
LOCUS       DATABJ010000265         3410 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_155444, whole genome shotgun sequence.
ACCESSION   DATABJ010000265 DATABJ010000000
VERSION     DATABJ010000265.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3410)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3410)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3410
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_155444"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            300..1547
                     /locus_tag="VHF44_04275"
     CDS             300..1547
                     /locus_tag="VHF44_04275"
                     /EC_number="2.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_function: GO:0031071 - cysteine desulfurase activity
                     [Evidence IEA];
                     GO_process: GO:0006534 - cysteine metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEX2124804.1"
                     /translation="MLQERALDVFKIREDFPILKRKINGNKTLVYLDNAATTQKPISV
                     INAIVDYYMNYNSNIHRAVHQMAEEATLAFEMTRQKVAKFINASSSDEIIFTRNATEA
                     INLVSYSWGQSNINKNDKIVITEIEHHSNIVPWQILAQEKGAVVEYIRVNNDGYLDMG
                     AYEEFLQSNKVKLVSISQMSNVLGTIVPIEKIINKAHSKGIPVLVDGAQSVPHMPIDV
                     QRMNCDFMVFSAHKMLGPTGVGILYVKREILDKMKPFIGGGDMIKEVRKHDIRYNDLP
                     YRFEGGTPNIADVIGFGSAIDYLNKVGMDKVREHEIDITSYAIKSITNVRGVTVYGPT
                     NPKHRGGVLSFNISDIHPHDLATIMNDHGVAIRSGHHCAQILMERLDVTATSRTSFYI
                     YNTKEEVDIFIDALNQARRLFKI"
     gene            1544..1972
                     /locus_tag="VHF44_04280"
     CDS             1544..1972
                     /locus_tag="VHF44_04280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005198 - structural molecule activity
                     [Evidence IEA];
                     GO_process: GO:0016226 - iron-sulfur cluster assembly
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HEX2124805.1"
                     /translation="MSDDIYREIILDHYRNPRNKGKLPHADVSTHDSNPLCGDEIDIH
                     LKVEQGKIKDIKFEGRGCAISQASASMLTEMVLDKPLTAVKDLAKDDILEDIGLMNLG
                     PARIKCALLSLKVLKMGMINYYTDKDPDSAKKIQDESKLY"
     gene            2383..3114
                     /locus_tag="VHF44_04285"
     CDS             2383..3114
                     /locus_tag="VHF44_04285"
                     /inference="COORDINATES: protein motif:HMM:NF025736.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEX2124806.1"
                     /translation="MQHLAVLLSDFWPSWIIHIRSTQFLALVVFFVILTVFVMLGATA
                     DIDNIISQYFKSIQGNENLDTLMIIITTFGDVFSLVMIAIILTIIRRTRKTGMIFLIS
                     IVILTVLVMYIKPIVDRQLPPYGFEPKLQLSENFKIENDSLVPFARDLSYPSNHIARA
                     TAFAFIIGFALNKKSRTAGLLIWLFPAMIAITRLYVMQHYFTDLMGGFLLGLIISIIL
                     SNVMRLDEPFMMSRFKGKEDQKNTF"
     gene            complement(3111..>3410)
                     /locus_tag="VHF44_04290"
     CDS             complement(3111..>3410)
                     /locus_tag="VHF44_04290"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124807.1"
                     /translation="LSDIPRAVVNMVEAYAYLNEQGKFSYRLLLPRGEKSLTIKAKKI
                     GLALQAELLLALKNNKLKVNLKEIRYIHDENHYGWLLFNPTIQEQYFSKNNIVDY"
BASE COUNT         1159 a          537 c          595 g         1119 t
ORIGIN      
        1 catgagatga tcacatatgc ttgggctgat tatatacgta tatatatatg tatatatata
       61 tgtatatata tatgttgata ttgagtctac aagaactatc attatcataa tgatattaaa
      121 ttgtgatatt ttgatataac cgcaggacta ataataaaaa agattctttc accacgagaa
      181 aagatatatg atgatctgat gacgttttat agtgataatc cgctacctct aatttgatac
      241 gcacctttat gcactttaca cttctaagtt tatatcttaa tagggcgttt aattaaacaa
      301 tgttgcaaga aagagccctc gacgttttta aaattcggga agattttccg atattaaagc
      361 gtaagattaa cggcaataaa acacttgttt atcttgacaa tgcggctact actcaaaaac
      421 caatttcggt aattaatgca atcgttgatt attatatgaa ttacaattct aatatccata
      481 gggctgtcca tcaaatggct gaagaagcca cactagcatt tgaaatgacg cgacaaaagg
      541 ttgcgaagtt cattaatgct tcttcatcag atgaaataat ttttacacgc aacgcaactg
      601 aggcaattaa cttggtatcg tattcttggg gccagtccaa tattaacaaa aatgataaga
      661 ttgtaattac tgaaattgaa catcatagca atattgttcc ttggcaaatt cttgctcagg
      721 aaaaaggtgc tgtagtcgag tacatccgag ttaacaatga cggttatcta gatatgggag
      781 catatgaaga atttctccag agcaataaag ttaaattggt ttcaataagc cagatgtcaa
      841 atgtacttgg cacaatagtg cctatagaga agattatcaa taaagcccat agtaaaggaa
      901 ttccagttct tgtagatgga gctcaatcag ttcctcacat gccgatagat gttcagagaa
      961 tgaattgtga tttcatggtt ttctctgctc acaaaatgct tgggcctact ggtgttggta
     1021 ttctctatgt aaaaagggag atacttgata aaatgaagcc ctttataggc ggaggagata
     1081 tgataaaaga agtgcgtaaa catgatatta gatataatga tttaccatac agatttgaag
     1141 gtggaactcc aaacatagca gatgtaattg gatttggatc tgcgatagat taccttaata
     1201 aagttggtat ggataaagta cgggaacatg aaattgatat tacaagctat gccataaaat
     1261 ctataaccaa tgtcagaggc gtcactgtct atggacccac taatcctaag catagaggcg
     1321 gagtattgtc gtttaatatt tctgatattc atccacatga tcttgctact ataatgaatg
     1381 atcatggcgt ggcaataaga tctggacatc attgtgcaca gatactcatg gaacgattgg
     1441 atgtcacggc aacctcacgc acaagttttt atatctataa taccaaagaa gaggtcgata
     1501 tattcatcga tgcacttaat caagctagga gattgtttaa aatatgagtg atgatatcta
     1561 tcgtgaaatt attttagacc attacagaaa ccctcgaaat aagggcaaat taccacatgc
     1621 agatgttagt acgcacgata gcaatcctct atgtggagat gaaattgaca ttcatttgaa
     1681 agttgaacag ggaaaaatta aggatataaa attcgaaggt agaggatgtg caattagtca
     1741 ggctagtgct tctatgctta ccgaaatggt tttggataaa cctttgactg ccgtcaaaga
     1801 tctggctaag gatgacattt tagaagatat tggacttatg aatctcggac cagcaagaat
     1861 aaaatgtgct ttactatcat taaaagtcct caaaatgggt atgataaact attatacaga
     1921 taaagatcct gactctgcaa agaaaataca ggatgaatca aaactctatt aatatgagta
     1981 gggctaaacc aattatacat cattctttat gtcatttttt taataatatg agatttacaa
     2041 agaccaagta ttaaacaaat taaagttata aagataaaag atcttaattt caaaatagat
     2101 aatgtcagta gtctataggt ttaacattgt tcccaagctt tataatgaac tgaatatata
     2161 tacatataca cataaatata tacatataaa caacttacta taatggaata ataataatat
     2221 tcttctttca ctctcccatc aatttcaaac caaaagcgcc agtcataatt tcacttaatg
     2281 atatttatct gcattttata tatttaaggc tgaatatgtt attcatcaac gtaaactcat
     2341 ctaactttat ttaattaaca aacaattaaa aatgcattat agttgcagca tttagcagtg
     2401 ctattgtctg acttttggcc atcgtggata atacacatta gatcaactca gtttctagct
     2461 ttggtagttt tttttgttat tcttactgta ttcgtaatgt taggagctac agcagatatc
     2521 gataatatca taagccaata ctttaagtct attcagggaa acgaaaattt agatacatta
     2581 atgataatta ttaccacatt tggtgacgtt ttttcattag tgatgattgc gatcattctt
     2641 actataattc gacgaactag aaaaactggc atgatttttt taatatctat tgttatcctt
     2701 acagtcttag taatgtatat caagcctata gtggataggc aattacctcc ttacgggttc
     2761 gaacctaagt tgcaattatc tgaaaacttt aagatagaaa acgacagtct agttcccttt
     2821 gcacgtgatc tgtcctatcc ttccaatcat atagcacgag caacagcgtt tgcatttatt
     2881 attggatttg cattgaacaa aaagtcaagg actgctggct tgctcatctg gttgtttcct
     2941 gctatgatag caatcactag gctatacgta atgcagcatt attttactga tcttatggga
     3001 ggatttcttc tggggctgat aatttcgata atattgagta atgtaatgag actcgatgaa
     3061 ccttttatga tgtcgcgatt taaaggaaaa gaagatcaaa aaaacacctt ctagtaatct
     3121 actatattgt ttttagaaaa atattgttcc tgtatggttg gattaaaaag aagccatcca
     3181 tagtgatttt catcgtgtat gtatctaatt tcttttagat ttacttttag tttattgttc
     3241 tttaaagcaa gtaacaattc tgcttgtaga gccaatccaa ttttttttgc ttttattgtt
     3301 aatgattttt ctcctctagg aagtaagaga cggtagctaa attttccctg ctcattgagg
     3361 taggcatatg cttctaccat attgacaaca gccctaggaa tatctgaaag
//
LOCUS       DATABJ010000266         4324 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_857585, whole genome shotgun sequence.
ACCESSION   DATABJ010000266 DATABJ010000000
VERSION     DATABJ010000266.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4324)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4324)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4324
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_857585"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(202..612)
                     /locus_tag="VHF44_04295"
     CDS             complement(202..612)
                     /locus_tag="VHF44_04295"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2124808.1"
                     /translation="MYVNQLINRYTTSPKKQRILVIDDEPDVNFTIKLALENEGFEVD
                     TFDNPQLALSNFKPKFYDLILLDIKMPKIDGFEFYTEVKKKDNKVKVCFLTASEYTHY
                     EQFLKENPKVTVKCFARKPIPIGDLAKVVKEQLA"
     gene            823..2838
                     /locus_tag="VHF44_04300"
     CDS             823..2838
                     /locus_tag="VHF44_04300"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEX2124809.1"
                     /translation="MMIRTKLIIIFLTISIVPLTIFGTLNYLNTEQVLTKETFNKLET
                     LATLQEKNIRNFVDQNLEKLNLVSSRLQLKVELDKYNNNIGNKTQSQQFITRIINPVK
                     SEIESFEDIYILSPMGKIVASTNKASIGRDHSNDEFFIKGSKQNDVSIFFKDPQGNLR
                     VYLTGPLNLNNNKVVGVVTIIANLDTLLSQIQTYEGLGQTGEFNLVKRDDNGDALLIN
                     PLRFDPAAALTLRVHKDDVQRPTIQALLKNEKTFTDIVDYRGVPVLAVTRYIEGVDWG
                     LVAKIDKAEAFAALDNLRNLTILTGIMVAALVVVASLFLGQSMSLPITRLRNAAQNIA
                     GGNFGTKIEVNSSDEIGQLANQFKNMKQSIQYTNQNLNQIVYDRTKKLEEANKQLDLA
                     NKQLKLNEKAQKEFINVAAHELRTPIVPILGLSELLYSQMNKSMQDDDDEGRKQLLQP
                     EPQEKQQKQDLLQKKKQLEKLEVIIRNASRLQRLTEDILDVTKIESQALKLRLEKANL
                     NDLISDIIGDYTGSEIGKLKSNVKIRFEPNDKDSNIFVNVDRGRISQVIFNLISNALK
                     FTEEGSITVAINNNISKDNNINNQVIVSVKDTGTGIDPEILPRLFTKFATKSDVGTGL
                     GLYISKSIVEAHGGKIWAENNNNNNNLDGQIRRGSTFYFTLPSSSSP"
     gene            complement(2983..3375)
                     /locus_tag="VHF44_04305"
     CDS             complement(2983..3375)
                     /locus_tag="VHF44_04305"
                     /inference="COORDINATES: protein motif:HMM:NF012301.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0000160 - phosphorelay signal transduction
                     system [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEX2124810.1"
                     /translation="MNEPELASKKILVVDDESDITFTLKSILEDNGFIVDIYTSSVLA
                     LRNFQANSYDLILLDIKMPDMDGFELYNKIKEIDSRAKICFLTASEMFYEDLRKARFE
                     LDESLGERYFIQKPITTKELLRRINAII"
     gene            3555..4151
                     /locus_tag="VHF44_04310"
     CDS             3555..4151
                     /locus_tag="VHF44_04310"
                     /inference="COORDINATES: protein motif:HMM:NF013077.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEX2124811.1"
                     /translation="MTLKPEVEHTRHPEYKINPLFVNRWSPRSMSGEELNDQDIMSLF
                     EAARWAPSSFNNQPWRFIYAKRNTQHWDRLFSLLYEGNKVWAVNAAVLVVVISRKNFE
                     YDERPSITHQLDAGAAWENLALEASLHGIVTHGMEGFDYKKARVDLGISDNFDVMAMI
                     AIGKRGPKENLPLKLQEREFPNDRKPLADIVMEGYFRE"
BASE COUNT         1564 a          678 c          742 g         1340 t
ORIGIN      
        1 caaataaaaa cctcttaatt catagcctct tcagttccga aactatgtat atggcgtttt
       61 tttagtctga tgtcctataa caaagtaatt tatcaatatc actaggtcat ttgtagcatt
      121 acaagagcta tcagacagca gtgaagtagc gacaataata ataacaacaa taagatccaa
      181 ctttttgaaa atcaaatttt attatgctaa ttgttctttt actaccttag ctagatcacc
      241 tattggtatt ggtttacgag caaaacattt tacggttact ttaggatttt cttttaaaaa
      301 ctgttcataa tgagtgtatt cactagctgt caaaaagcaa accttgacct tattgtcttt
      361 cttctttact tcggtataaa attcaaagcc atctattttt ggcattttaa tatctaggag
      421 tataaggtca taaaatttag gtttaaaatt agataatgct agttgaggat tatcaaatgt
      481 atcgacttca aatccttcat tttctagtgc aagctttata gtgaaattaa catcaggttc
      541 atcatctata actaaaattc gctgtttctt aggggacgta gtatatctat taattaattg
      601 attaacgtat atctaaatct tattttttaa tgaaatagga gtaagaatta agtagtaaac
      661 aatccttgat ggaatgtttc ttacattact acttctttaa ttgaataaat gtttcttcac
      721 ctttactgac cgcataatta tgatagattt cttgtggaga atctaagaag aacaacgaaa
      781 tgcctaagaa catggatcca ttataatatt agtaataaac gcatgatgat aaggactaaa
      841 cttataatca tatttttaac aatttctatt gttcctttaa ccattttcgg aactctaaat
      901 tatctcaata ctgagcaggt tcttacaaag gaaactttca ataaacttga gactcttgct
      961 acgctgcaag aaaaaaacat acggaacttc gtagaccaaa atttagaaaa attgaatttg
     1021 gtctctagca ggctacaatt aaaggttgaa ttagataaat acaataacaa tattggaaac
     1081 aaaactcaat cacagcagtt tattacaaga ataataaatc cagtaaagtc tgaaattgag
     1141 agctttgagg acatttacat actaagccct atgggtaaaa tagtagcttc tactaataag
     1201 gcaagtatag gcagggatca tagtaatgat gaatttttca taaaaggaag caaacaaaat
     1261 gatgtgagta tattctttaa agatccacaa ggaaatctaa gggtgtatct cacagggcct
     1321 ctaaatctaa ataataataa agtggtagga gtggttacta taattgctaa tttagatact
     1381 ttgctgtcac agattcaaac ctatgaaggc ctaggacaga caggcgaatt taacttggta
     1441 aagagagatg acaatgggga tgctttgttg attaatccat tacgatttga ccctgcagca
     1501 gcattgacat taagagtaca taaagatgat gtgcaaagac ctacgattca agcactctta
     1561 aaaaatgaaa aaacttttac cgatattgta gactatcgcg gtgtgccagt acttgctgtg
     1621 actcgctata tagaaggagt agattggggt ctggtagcaa agatagataa ggctgaggct
     1681 tttgctgcac ttgacaatct aaggaatctg actattttaa caggaataat ggtagctgct
     1741 ctagttgtag tggcctcctt gtttttaggc caatccatgt ctctacctat aacaaggtta
     1801 agaaatgcag ctcaaaatat cgccggagga aattttggca cgaaaataga agtcaacagt
     1861 tcggatgaga taggacagct tgctaaccaa ttcaaaaata tgaaacagag tatacagtat
     1921 acaaatcaaa acctaaacca aatagtatat gacagaacaa agaaactaga agaagcaaat
     1981 aaacaacttg atttggctaa caaacagtta aagcttaatg agaaagcaca gaaggaattc
     2041 attaatgtgg cagctcacga attaagaaca ccaatagtac caatacttgg tctatctgag
     2101 cttctctata gtcagatgaa taaaagtatg caagacgatg atgatgaagg aagaaaacaa
     2161 ttattacaac cagaaccaca agagaagcaa caaaaacaag atttattgca gaagaaaaaa
     2221 caactcgaaa agttagaagt aattattaga aatgctagtc ggttacaaag acttactgaa
     2281 gacatattag acgttacaaa aattgaaagt caagctctca aattaaggct agaaaaagct
     2341 aaccttaacg atctaatatc agacataata ggggattaca caggaagcga aattggaaaa
     2401 cttaaatcaa atgtcaaaat cagatttgag cctaatgata aggatagcaa catttttgta
     2461 aatgtagaca ggggaagaat atctcaggtt atttttaatc tgataagcaa tgctctgaag
     2521 ttcaccgaag aaggatctat aactgttgct attaacaata atatcagtaa ggacaataat
     2581 attaataatc aagtcattgt atctgtaaag gataccggga ccggcataga tccagaaata
     2641 ctaccacgct tatttacaaa atttgctacc aagtctgatg tgggaacagg acttggccta
     2701 tatatatcaa aaagtattgt agaagctcat ggaggtaaga tatgggctga gaataataat
     2761 aacaataata atttagatgg acaaataaga agaggatcta ctttttactt tactttacct
     2821 tcatcttcat caccttgata atctacaata aaaaggaaga ataattgaat actttatgat
     2881 attatatttt ttatgttctt tttattattt ttgttcctta tttctctctt tcttcttaat
     2941 ccttatgatt atttatatcc aacacttatt gtgtgaatta gactaaatta ttgcatttat
     3001 tctccttaat agctctttag tagtgatggg tttctgaata aagtaacgct cacctaaaga
     3061 ttcatccaat tcaaaacgtg cctttctaag atcctcataa aacatctcac tagcagttaa
     3121 aaaacatatt tttgctctac tgtctatttc ttttatctta ttatataatt caaatccatc
     3181 catatcaggc attttaatat caagcaatat gagatcgtat gaattagcct gaaagtttct
     3241 taatgctaat acagaactgg tatatatgtc gactataaac ccattatctt ccaaaatgct
     3301 ctttagtgtg aaagtgatat ctgactcgtc atctactacc aatatttttt tcgaagccaa
     3361 ttcaggttca ttcattgctt attgctcttc cttgtgattg tgacttctaa aatctcttat
     3421 cttgatgatt attcatacgt ggatattctg ataatcatga aatataaata tattaattat
     3481 catatcagaa tataagatta ctttaaacaa gatatatctg atatcactat atactatact
     3541 gctcacacca gattgtgacg ctcaaaccgg aagtcgaaca tacaagacat cctgagtaca
     3601 aaataaatcc tttgtttgtt aacagatggt cacctaggtc aatgagtgga gaagaattaa
     3661 atgatcaaga tataatgagt ctttttgaag ctgctagatg ggcaccatcg tcttttaata
     3721 atcaaccatg gagatttatt tatgcaaaaa gaaataccca gcactgggat agactcttca
     3781 gtcttttgta tgaaggtaac aaggtatggg cagtaaatgc cgctgtatta gttgttgtaa
     3841 tctcaaggaa gaattttgag tatgatgaaa gaccttctat aactcaccaa ttagatgctg
     3901 gtgctgcatg ggagaactta gcattagaag catctctgca tggaattgtt actcatggca
     3961 tggagggttt tgactataaa aaagccagag tagacttagg aatttctgat aactttgatg
     4021 tcatggcaat gatcgcaatt ggtaagaggg gaccaaaaga aaatcttcct ctaaagcttc
     4081 aagaaagaga atttccaaac gatagaaaac ctttggcaga cattgtaatg gaagggtatt
     4141 ttagggaatg agaatggtca tgatgaaagc tgcaaggatc attaaaccaa agaatcttta
     4201 gaaatacaag atctggatat accaaagcca acaggttcac aagttcttgt aaaagtaata
     4261 tcatgtggca tatgtcatag tgacattcat ttataggaag gaggatatcg aggactcgaa
     4321 ggac
//
LOCUS       DATABJ010000267         2116 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1708955, whole genome shotgun sequence.
ACCESSION   DATABJ010000267 DATABJ010000000
VERSION     DATABJ010000267.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2116)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2116)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2116
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1708955"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..346)
                     /locus_tag="VHF44_04315"
     CDS             complement(<1..346)
                     /locus_tag="VHF44_04315"
                     /inference="COORDINATES: protein motif:HMM:NF020917.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0043231 - intracellular membrane-bounded
                     organelle [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="CDGSH iron-sulfur domain-containing protein"
                     /protein_id="HEX2124812.1"
                     /translation="MDPNSKAAREDQLKQKPKIVSLANGPYLLIDNNEPKIIENLQNA
                     KGEHLLSIRGVSLCRCGASNNKPFCDGTHGKIGFSSENKKENVNDTDALPIVKDKRKN
                     YVGKRITIHDNRI"
     gene            complement(414..674)
                     /locus_tag="VHF44_04320"
     CDS             complement(414..674)
                     /locus_tag="VHF44_04320"
                     /inference="COORDINATES: protein motif:HMM:NF014229.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UBP-type zinc finger domain-containing protein"
                     /protein_id="HEX2124813.1"
                     /translation="MKSCTHFDQVNAGIKGKTKGCEECEKIGSDWVHLRLCLTCGHVG
                     CCDSSPNKHGTKHFNETGHPVIKSYEPGENWKWCFVDELFMK"
     gene            858..1424
                     /locus_tag="VHF44_04325"
     CDS             858..1424
                     /locus_tag="VHF44_04325"
                     /inference="COORDINATES: protein motif:HMM:NF024853.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin domain-containing protein"
                     /protein_id="HEX2124814.1"
                     /translation="MTSNNQTERNSKKLTVPVNIGTDHIRGSINAPLTIVQYGDYECP
                     YTGMAYPIIKRILKRFDGQVYFVFRNFPLRDIHPHAQHAAEAAEAAAAQDKFWQMHDY
                     LFEHQKALDDPHLLEYAQKVGLDINKFEKEVGGHVHTSLINKSLESGIDSGVAGTPTF
                     FINGERYEDSWDFDTLSSFLERSLPHNT"
BASE COUNT          648 a          389 c          384 g          695 t
ORIGIN      
        1 ttattctgtt atcatgtatg gttattctct tgccaacata attttttctt ttatccttaa
       61 ctatgggaag agcgtcagta tcatttacat tttctttttt gttctcgctt gaaaatccaa
      121 tttttccatg agtaccatcg cagaagggtt tgttgtttga agcaccacat ctacataagg
      181 atactccgcg tatggacaaa agatgttctc ctttggcatt ttgaagattt tcgataattt
      241 taggctcatt gttgtctatc agaagataag gtccattagc aagcgatacg attttgggtt
      301 tttgttttaa ttgatcctct cgtgctgctt tactgtttgg atccatggat acttattcac
      361 tcacttatta accaataaat cgttctcaga gtcgtgagtc ttggttgcta tctctatttc
      421 ataaatagtt cgtctacaaa acaccatttc caattttcac ctggctcata tgacttaatg
      481 acgggatgcc cggtttcatt gaagtgcttc gttccatgct tattaggaga agaatcacaa
      541 cagccaacat ggccacatgt caaacataat cgcagatgta cccagtcaga tcctatcttc
      601 tcacactctt cgcagccttt tgtctttcct ttaatcccag catttacctg gtcaaaatga
      661 gtgcaagatt tcataaatag agcacagcaa atcatgtatt taacactagt agtaacgagc
      721 aactcagtat gtttcttgag gctaacttgc tagatcagtg actactgctg ctgaatttaa
      781 taggtttgat agcaaataaa atgaaagtat gaagatacat agaattcgta ctccgatgga
      841 ggaaaatgag atataagatg accagcaata atcaaaccga aaggaattct aaaaaattga
      901 ctgttccagt caatataggt acagatcaca ttcgaggttc cattaatgct cccctaacta
      961 tagtacaata tggggattat gaatgcccct atacagggat ggcttatccc ataattaaga
     1021 ggatattgaa gcggtttgac ggtcaagtat attttgtgtt tcgcaacttt ccattaagag
     1081 atatacaccc tcatgcccaa cacgctgcag aagcagctga agcagcagcg gctcaagaca
     1141 aattctggca aatgcatgat tatctttttg agcatcagaa agcattagat gaccctcatt
     1201 tattggaata tgcacagaaa gtggggttag acattaataa attcgaaaag gaagtagggg
     1261 gacatgttca tacttcttta ataaacaaat cacttgaatc gggaattgat agcggtgtag
     1321 caggtacccc aactttcttt atcaatggag aacgatatga agattcatgg gattttgata
     1381 ctctatctag tttcctagag aggagtttac cacataacac atagcatgga gccattttga
     1441 gcctcattaa ttaaacaaca aaaacatctc ttcataggcg ggttttttgc atatgtgaat
     1501 cttgcctgtg gtgtgctatc ttacatactt agtttccata ggcaagcttg gagatatttc
     1561 ggataatatc gattacaaat ccagttaaat gattctagtt cttggcaatt cgacagtccc
     1621 gcagtaatgc tgttgacttg gttatgttta cgtggttaat gcgatcaatc accgtatcca
     1681 aatatggatc caagtgaata acttcaatta ttagtgtcag ttatgccaga atatagaagg
     1741 ttaaattatg gaaattggtt cattgcatga ctcatgaact tccagtcttt agttattcca
     1801 tagcgctgca ttaactgata cattgaatat atctgcagtt tggattcaaa tgaattctta
     1861 ttttaggtct ttgaatgtcg atgagctact acaacaatag taatgccagc tttagctttt
     1921 attacatcac taaagaaaca aggtgtataa atcaagaaac tttaatgtac attctcagag
     1981 gacagacggt ccttgttcaa atctggtcac gattattgat aatgtatatc tcaaaaccag
     2041 attctagtta atattgttat atgaagccca aatttaattt attcatcttg cattgattct
     2101 agataaacca aatttc
//
LOCUS       DATABJ010000268         3511 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2113036, whole genome shotgun sequence.
ACCESSION   DATABJ010000268 DATABJ010000000
VERSION     DATABJ010000268.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3511)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3511)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3511
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2113036"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..232
                     /locus_tag="VHF44_04330"
     CDS             <1..232
                     /locus_tag="VHF44_04330"
                     /inference="COORDINATES: protein motif:HMM:NF015722.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SUMF1/EgtB/PvdO family nonheme iron enzyme"
                     /protein_id="HEX2124815.1"
                     /translation="HQMIGDVWEWTSSEYVLYPRFKSRFAEYTDKWSINQKVLRGGSF
                     ATPSNQIRNSYRNYFKPHERVLFAGFRCAKDN"
     gene            complement(316..1464)
                     /locus_tag="VHF44_04335"
     CDS             complement(316..1464)
                     /locus_tag="VHF44_04335"
                     /inference="COORDINATES: protein motif:HMM:NF014757.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-CoA dehydrogenase family protein"
                     /protein_id="HEX2124816.1"
                     /translation="MSSINRITVLGSGIMGHGIAQVSAMAGYNVTLRDIDQSFLDKAM
                     EKIQWSLNKLVEKQKMTISQAEEILGRILPVVDLREALRGADMLIEAVPEDMNLKRKV
                     YKEINQCSEANTIYASNTSTLPITELGELTTRPEHFIGLHFFNPPQLMQLVEVIPGRL
                     TNQDITDKAMDYVRRIGKQPILCRKDVSGFIVNRIFIPLVHEAAYCQERDKASLLQID
                     SAVKFKMAFPMGIFELADYTGLDVIHKATIEMYSRDNAVINPHPKIKELFDEGNLGQK
                     SGRGFYDYKGEKYERINLTAQEAESYDPLNLIAVAANSAAWLLSNGVRNEEDLEKAMK
                     LGMGLKEKLFQTIESFGIKRIVNRLRELEKEYGFFYQPNGYLINYKRS"
     gene            1602..2222
                     /locus_tag="VHF44_04340"
     CDS             1602..2222
                     /locus_tag="VHF44_04340"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124817.1"
                     /translation="MTIGEPQETVQRMEFVKYRLIELYKKNIVKINHSAMELVCARHL
                     IHYGYDVDVEKQLTDILVCDLHATKGDGEAIVEIETGFVPPEHALDPLSYYVARIASK
                     IARYSKFANQFVLATPPVSILPIPKIFSRPPRDRKEEQIEKVKLLCDRYYRNPPVSLN
                     EIVNGRLHMIYIINIDDGQVKEMDVDQYFEEIVNLISIPNSIINDK"
     gene            2417..2923
                     /locus_tag="VHF44_04345"
     CDS             2417..2923
                     /locus_tag="VHF44_04345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF367 family protein"
                     /protein_id="HEX2124818.1"
                     /translation="MKVFVFMLNEDDPSKCTAVKLVKFRLAQSVKHIYKKALILNPFS
                     EILLSKQDARLSDSICAIDCSWNRSEHELKNRFLSKHPMSRRLPAMLAANPINYSKLG
                     RLSTAEALAGSLYILGDKQLAKDFMEKFKWGHTFLELNSSLLEDYSKAENEQEILLIE
                     KQYFPQLC"
     gene            2951..3232
                     /gene="rnpB"
                     /locus_tag="VHF44_04350"
     ncRNA           2951..3232
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="VHF44_04350"
                     /product="RNase P RNA component"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:14.4:RF00373"
                     /inference="COORDINATES: profile:INFERNAL:1.1.4"
                     /note="archaeal type; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00373"
BASE COUNT         1130 a          640 c          628 g         1113 t
ORIGIN      
        1 ccatcagatg ataggcgatg tatgggagtg gacatcatca gaatatgtgc tttatcccag
       61 atttaagtct agatttgctg agtataccga caaatggtcg ataaatcaga aggtattaag
      121 aggaggaagt tttgccacac catccaacca gataagaaat agttacagaa actactttaa
      181 accacatgag cgagtcctat ttgcaggatt tcgctgtgcc aaagataatt agttggaaaa
      241 gaaacgcaat cgattacaat aagaattatt tagatatgtt ataataggag ctagcaaaac
      301 aagccacaat aaagattagg agcgcttata gttgatcaag taaccgtttg gttggtaaaa
      361 aaaaccatat tctttctcca attctctcag cctatttaca atccttttaa ttccaaaact
      421 ttcaatagtc tgaaatagct tttcttttaa tcccattcct aatttcattg ctttctccaa
      481 atcctcctca ttacgaactc catttgaaag aagccaggcg gcactattag cggcgactgc
      541 aattaaattt aaaggatcat agctctctgc ttcttgtgca gtaagattta tcctctcata
      601 tttttcacct ttataatcat aaaatcccct accagatttc tgccccaaat tcccttcatc
      661 gaacaattct tttattttgg gatgaggatt aatcacagca ttatcgcggg aatacatttc
      721 tattgttgct ttatggataa cgtcaagacc tgtgtagtct gctagctcga aaattcccat
      781 cggaaaagcc atcttgaatt tcactgccga atcaatttgc aagagagaag ctttatcgcg
      841 ttcttggcaa tatgctgctt cgtggaccaa gggaataaat attctattaa caatgaaacc
      901 cgaaacgtcc ttcctgcata agataggttg tttaccgatt cgtcgcacat aatccattgc
      961 cttatcagtt atatcctggt tggttaacct gccagggatg acctctacta gctgcattaa
     1021 ctgaggaggg ttaaaaaaat gtaggccaat aaaatgctcc ggtctagtag tcaattctcc
     1081 caattcagta atcggcaaag tgctggtatt ggaggcataa atagtgtttg cttcagagca
     1141 ctggtttatc tccttataca ctttcctttt tagattcatg tcttctggta ctgcttcaat
     1201 cagcatatcg gcaccccgta acgcttccct gaggtctact acgggtaaaa tgcggcctag
     1261 tatctcctct gcctgactaa tagtcatctt ttgtttttca acaagcttat taagtgacca
     1321 ttgaattttt tccattgcct tatcgagaaa agattgatct atgtctcgca aggtaacgtt
     1381 ataacctgcc atagctgaga cttgtgctat tccgtgaccc attattcctg aacctagaac
     1441 cgttatccta ttaatcgatg acatttacaa acaattagcg atggaggcat ttttaatttt
     1501 actattcact gcgcggcata tttaaagact acctgattac tgatacttca tatttggatt
     1561 taaagcgttt cattctagat gtaacaaatc tttctaacaa aatgactatc ggagaaccac
     1621 aagaaactgt ccagaggatg gaatttgtta aatatagatt aatagaactt tataagaaaa
     1681 acatagtaaa gattaaccac tctgctatgg aattggtatg cgccaggcac ttgatacatt
     1741 atggatatga tgttgacgta gaaaaacagc tcacagatat tctggtgtgt gatcttcatg
     1801 caaccaaggg cgatggtgaa gcaatagttg aaatcgaaac tggattcgtt ccaccagaac
     1861 acgcactcga tcctttatct tactatgttg ctaggatcgc aagcaaaatc gccagatata
     1921 gtaaatttgc aaatcaattt gtcttagcaa caccacctgt cagcattctt cctataccca
     1981 agatatttag ccgacctcca cgtgatagga aagaagagca aattgaaaag gttaagcttt
     2041 tgtgtgatag gtattatcgt aatccgcctg tgagtttgaa tgaaattgtg aatggaagat
     2101 tacatatgat atatattata aatatcgatg acggacaggt caaagaaatg gatgtagatc
     2161 aatatttcga agaaattgtt aatttgatat caatacctaa tagtataata aatgataagt
     2221 aacaattctt gaaagcaata taatcggtat attaattttc atcttatctg tttgaagtat
     2281 gacaaaatcg tttttctttg aacgattctt tactggtatc taactttttt gaaaatgaca
     2341 caggagaata taatacctac tattctctct actatctact atatatataa ttcaagaaaa
     2401 gataatttaa tcatctatga aagtctttgt gttcatgttg aatgaggatg atccttctaa
     2461 atgcacagct gtcaagcttg taaagtttag actagcacaa tctgttaaac atatatataa
     2521 aaaagccctt atattgaacc cattttctga aatattgctt tctaaacaag atgctaggct
     2581 ttctgattct atttgtgcta tagactgttc gtggaataga tctgaacatg aattaaaaaa
     2641 tagattttta tctaaacatc cgatgagcag acgcttacca gcaatgcttg cagcaaatcc
     2701 tatcaattac tctaaactgg gaagactatc tactgcagaa gcattggctg gttcgcttta
     2761 tattttgggt gacaaacaat tggcaaaaga ttttatggaa aaattcaaat ggggtcatac
     2821 ttttttggag ctaaattcca gtcttttgga ggattattca aaggctgaaa atgaacagga
     2881 aattttgtta attgagaagc aatattttcc acaactatgt taaaatacta tctatacgat
     2941 agatatagtt gtgagctagc gagcgggtta cttcaaagag aggaaactcc tccctcattg
     3001 caggcaccca aattagcgat aattaactgg agacagttgg cgccggaaca gaaaagatat
     3061 ccagtcacat atatacgatg atggtgaata gcctgagatt ttgtgataaa ggaatgaaac
     3121 tgccgtcctg ggtggagcaa ggccgaacag agcttaaagg tcctgcactt gctcaggttg
     3181 gccgctcagc gaaatcccgt agagaacaga aggagggtta ctactagcac acagaataat
     3241 gtatctatat gaaattgaaa cttctcaaca taacacaggt tcttatacca aataatttta
     3301 ttctacgttc tgttcaatat ttgatgaatc ttaattacta tcgttttgtc acctgtgttt
     3361 tagattaaac aactgtatag caataggtat acagagaaga ttctaatggt ttaaatctat
     3421 agttattatc ttgatattcc ggctgttaat tagtagtatt cagtagcaaa tatcattaaa
     3481 tttttataat gatattttct atatatgcct c
//
LOCUS       DATABJ010000269         4506 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_860993, whole genome shotgun sequence.
ACCESSION   DATABJ010000269 DATABJ010000000
VERSION     DATABJ010000269.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 4506)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4506)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4506
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_860993"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(317..1093)
                     /locus_tag="VHF44_04355"
     CDS             complement(317..1093)
                     /locus_tag="VHF44_04355"
                     /inference="COORDINATES: protein motif:HMM:NF039346.3"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124819.1"
                     /translation="MPHISRTTYSPKDIDVRISEIYDGIYRISGFNEKFGITFNQFLI
                     DDEQPMLVHTGPIGMYKKIEEKVKEVIPLQKLTYVAFLHFESDEWGGMAFLESADAKL
                     VCSDLSSKLNLTGWHNVPVDHISFWDNDTLKTGRKQFRFIMTPHVHHWDSMMIFEETT
                     RSLFPSDLFIQPGDNKPVITEDLSENMINLYRGAGIFANEEPVRQTTKRLVNMSPKMV
                     YPMHGSCIDSSTFSKYTDAIMKSNFAYSGMLLGQKLEMVS"
     gene            complement(2183..3076)
                     /locus_tag="VHF44_04360"
     CDS             complement(2183..3076)
                     /locus_tag="VHF44_04360"
                     /inference="COORDINATES: protein motif:HMM:NF013098.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEX2124820.1"
                     /translation="MKVRYPVLRVKNIDSVLRFYEKCLGLHINRRYQDGDDGNLVYEL
                     GFKLKFVLSDDPILILQHDPNAKNAPQRSAGLYHFAILVPDRRSLASTYLAIRNSGVQ
                     YDGFADHLVSESLYLRDTENNGIEIYRDRQATEWPHDKEGHIKMATLPLDLNSLVSEL
                     NKEEKETAKAFPIGARIGHMHLRVTNLERSIKFYHEKIGLDITSDWSSMGASFLSAGG
                     YHHHIGMNTWHSLNGKVHCRGETGLENFTITIPDRTSFDTIESIINRHASSEQQSKQM
                     TDKNQFMIFDPDSIQIVFKLE"
     gene            complement(3354..4070)
                     /locus_tag="VHF44_04365"
     CDS             complement(3354..4070)
                     /locus_tag="VHF44_04365"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124821.1"
                     /translation="MYDHRPLVETLEKYIDYDKLKPNGNPNAPRLILTAVNILTAGPL
                     TFDSSKQQITPKHILATSAYPLYNFRWIEVEDGVYAWDGSLLSNTPLREVIDASPIND
                     KRICIVENYPKRVDTLPKNLPEVYHRARDIMFSDKTEHSVTMSKAITRYLRYIEELYQ
                     LIENHVDLTKVDPKQLKRVRKKYKKYKQERGAEIKDIVYITRDEPFPHMYENADFSPE
                     TIKNSIKEGEMKTIQALKGR"
     gene            complement(4128..>4506)
                     /locus_tag="VHF44_04370"
     CDS             complement(4128..>4506)
                     /locus_tag="VHF44_04370"
                     /inference="COORDINATES: protein motif:HMM:NF013862.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0006629 - lipid metabolic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="patatin-like phospholipase family protein"
                     /protein_id="HEX2124822.1"
                     /translation="ALANNNIKVDIIAGTSIGGINAAIIAGSKDAKHPEHLLEQFWLE
                     LSESFVDFDKVNFSSSYLPTFVEQLLLPPINYYHYFHTGSSKQEKNYSTTTNTNEYAI
                     KMKQLRSFYSSAMFGNDKMFKPR"
BASE COUNT         1393 a          769 c          752 g         1592 t
ORIGIN      
        1 gctctcatga tgagaaagag tatacacata gttcagcagg gaacatagag aaaatagaga
       61 atttccatgc ttaaataaaa gaagagaaaa gaaaagaagt atatatattt ctacatttga
      121 ctgctagtgc attttggaaa acctcagaat cgaaaaatca gaaggttttc ataatagtaa
      181 aggcgatatt tctgggtaat aaaataaaag cagtgtatca atttgcaata cccagcaaat
      241 tttaaaatga tgcttattag taaatgggtt ttcatggtta ctgcagcgta ttttagttga
      301 ttgagtaact aattagctaa ctgaccattt ccagcttttg acctagtaac ataccagaat
      361 atgcaaaatt acttttcatg attgcatctg tatactttga aaaggtagaa ctatcaatac
      421 aggagccatg cattggatat accatttttg gtgacatatt gacaagcctt ttagtagtct
      481 gtcttactgg ttcttcattt gcaaatattc cagcacctct ataaaggtta atcatattct
      541 ctgataggtc ttctgtaatg actggtttat tatctcctgg ttgaatgaat agatcagacg
      601 gaaaaagcga tctagtagtt tcttcaaaaa tcatcatact atcccagtga tgcacatgag
      661 gagtcataat gaatctaaac tgttttctac ctgttttcag agtatcatta tcccaaaagg
      721 agatatggtc tacagggaca ttatgccatc cagttaagtt taactttgaa cttaaatcac
      781 tgcatactaa tttagcatca gcagattcaa gaaatgccat tcctccccat tcatcacttt
      841 caaaatgtaa aaatgctaca taggttagtt tttgcaacgg aattacttct tttacttttt
      901 cttctatttt cttatacatt ccaataggac cagtatgaac aagcattggc tgttcatcgt
      961 caattaagaa ttgattaaat gtaattccaa atttttcatt aaatccagaa attctgtata
     1021 ttccatcata tatttctgat attctgacat cgatatcttt tgggctatag gtagtcctgc
     1081 ttatgtgtgg catgtattaa tactatattt gaaatgatat tagatatata aataaattta
     1141 ttttgttgta ctttctgtaa ttatatatat atgtatatat gtatatatcc atgacataat
     1201 tttatagtaa aataaaagat ggtgttagga caaatctcaa ataagacagt gaattaaatt
     1261 tccaaatatt tgtaagtcgg atagataaag gagtaaataa agtcttaggg aacctataca
     1321 tagaatctgc gaatggtaga ggtagtaatg ataataacta gtcaatcagt aatcgcgtac
     1381 atgattacat gttattagca acaaccgtct taatgctaca ataaactata tagatactaa
     1441 aatgctagaa taaaatgttt tattatcttt gtttcccttc aaatatactg ttgctgtctg
     1501 tattttgttt ttcattcttg ttcattattt ttcttcctgg gtctaaattc taattctact
     1561 ccgcttttat cattataatt aaagataaat gctttattgg gtaaaaagga aaggttgaga
     1621 tctttgcgtt taaacacata tacatttctc tgtaggtaat ctagaattgt ttgggatgtt
     1681 acagcttcaa tgaatcattg actaatttca agtgaaaatg cataagccaa agggaatgag
     1741 ttgcaaagca tatccagatt tgaaagacga agtaattaca gaacttgcag ctctggtaga
     1801 attcattata tgacttcttt tagagcggta tagtggtgca cgtttctgtt cttaccaatt
     1861 ggaataatat cacttctcag cggtggcata catatgttgg tctacattgg taaagcaaaa
     1921 tgaaggtctt gctacagcag cggtgacacc ttagtagcaa aggagtgatt aaaaatgtgg
     1981 tcttacctgt tttcgtgttt aacatcatta tatcatcata aagaagcagc aaaatgaata
     2041 acaattcatt catatacata gactttttcc agtcatctat tcgtatccat atcactcttc
     2101 cattaaatac atttcatata tagacatatt actctcacaa caactctacg ggatgacatg
     2161 tatggtcata gatagacaat aattactcta atttgaacac aatctgtata ctatctggat
     2221 caaatatcat gaattgattc ttgtcggtca tttgctttga ttgttgttca gaactagcat
     2281 gacgattaat gatagactca attgtatcaa aagatgttct gtcaggtatc gttattgtaa
     2341 agttttccag tccagtctcg ccacggcaat gaacttttcc gttcaagcta tgccacgtgt
     2401 tcattccgat atgatgatga taccctccag cagaaaggaa ggaagcgccc atagagctcc
     2461 aatctgatgt tatgtctagc cctatttttt catgataaaa cttgattgac ctttcaaggt
     2521 ttgtaaccct aagatgcata tgtcctattc ttgctccaat aggaaatgct tttgcagtct
     2581 ctttttcctc tttattaagt tcagatacaa gggagttcag atcaagtggt agagtggcca
     2641 tcttgatatg tccttccttg tcatgaggcc attcagtagc ttgtctgtcc cggtagattt
     2701 ctatgccatt attttcagta tctctcaggt ataatgactc actgactagg tgatctgcaa
     2761 atccatcata ctgtaccccg gaatttctaa ttgccagata agtggatgca agacttctcc
     2821 tgtcaggaac aagtatcgca aagtgataaa gtccagctga acgttgtgga gcattttttg
     2881 cattaggatc atgttgtagt ataagaatcg gatcatcaga taagacgaac tttagtttaa
     2941 aaccaagttc atatactaga ttaccatcat cgccatcttg atatcgtctg tttatatgca
     3001 atccaagaca tttttcatag aacctcaaga cactatcaat attcttgacg cgtaatactg
     3061 ggtatcgaac cttcatacca ctgtgcatct tgaaactaac caaacagcga ttccacttct
     3121 tcttcttctt tttatggttt tacgttattt atatgtagaa tgtaactatc aaaaataaaa
     3181 gaaataaaaa ctagacgtgc tttcttgaag acactaaaaa ggtgtcaata ttgaacttaa
     3241 tttcaatcaa acacttcttt agcaaagtta aggaaagttt tttgatcatg gttgttcctc
     3301 aacaagaatc gccaaccatc agcatgtcat gtaataggaa tttactatag atcttatcgc
     3361 cctttcaatg cttgaattgt tttcatttct ccttctttaa ttgaattttt gatcgtctct
     3421 ggtgaaaaat ctgcattttc atacatatga ggaaaaggct catcacgtgt tatgtaaact
     3481 atatctttta tttcagctcc tcgttcttgc ttgtattttt tatatttttt gcgaactctt
     3541 ttaagctgct ttggatcgac tttcgttaga tccacatggt tttctattag ttggtaaagt
     3601 tcttcaatgt aacgcaaata tcgtgttatt gctttagaca ttgttacgct atgctctgtc
     3661 ttgtcagaaa acattatgtc tcttgctcta tgataaactt ctggtaggtt ctttggcagt
     3721 gtatcaactc tttttggata gttttctact atacatattc gtttatcgtt tatcggggat
     3781 gcatctatca cctctcttaa tggagtgtta ctcagtaaac tcccatccca tgcatatact
     3841 ccatcttcta cttctatcca acgaaagtta tacaacggat aagcagatgt tgcgaggata
     3901 tgttttggtg ttatctgttg cttagagcta tcaaatgtca gtggacctgc agttaatata
     3961 tttactgcag ttaagatcaa acgtggtgca ttaggatttc cattaggttt cagtttgtcg
     4021 taatcaatat acttttctaa agtttctact aaaggtctat gatcatacat ataagtccaa
     4081 ttttgcggtg cgaaataatc tgggtctgtt agagcagttt ccagtctcta cctaggttta
     4141 aacattttat catttccaaa catagctgaa ctatagaatg accttagctg cttcattttt
     4201 atagcatatt catttgtatt tgttgttgtt gaataatttt tttcttgctt tgatgagcca
     4261 gtatgaaaat agtggtaata attaataggt ggcaataata gctgttctac aaatgtgggt
     4321 agataagaag aagaaaaatt aactttatca aaatctacaa agctctcaga taattccaac
     4381 cagaactgtt ctaggaggtg ctctggatgt tttgcatcct tgcttccagc tataattgca
     4441 gcatttattc cacctattga tgtacctgca ataatatcaa cctttatatt gttattggca
     4501 agtgct
//
LOCUS       DATABJ010000270         3298 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1463204, whole genome shotgun sequence.
ACCESSION   DATABJ010000270 DATABJ010000000
VERSION     DATABJ010000270.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3298)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3298)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3298
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1463204"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..311
                     /locus_tag="VHF44_04375"
     CDS             <1..311
                     /locus_tag="VHF44_04375"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124823.1"
                     /translation="CSKKVWPPSYFCSNCFTKTELKKFETVETVLEFTTSHVNNSRGT
                     FGIVDLAGIRIVGAICGELLYEGIEVRMTSCGINSDGSVYYDFEPCTNRERMRAKRLH
                     "
     gene            342..701
                     /locus_tag="VHF44_04380"
     CDS             342..701
                     /locus_tag="VHF44_04380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124824.1"
                     /translation="MSYDRFVDDRLLTSRDALNKVQIKIKLVDIDENARDYSQRYGQR
                     VLIKKILLSIKHTDTEKFEEKELDIEELESRMRKERLFTSSNRWIFPSEIKNGYVVAN
                     KHLDLLADAISLDVIAF"
     gene            complement(873..978)
                     /locus_tag="VHF44_04385"
     tRNA            complement(join(873..918,951..978))
                     /locus_tag="VHF44_04385"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(910..912),aa:Asn,seq:gtt)
     gene            complement(1146..1703)
                     /locus_tag="VHF44_04390"
     CDS             complement(1146..1703)
                     /locus_tag="VHF44_04390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEX2124825.1"
                     /translation="MATSTNEGTNGDIEIPDRVNASKDKDILIIKGTNGTIRKDFTKL
                     PAYIEIEDKKIYIKPYGKRKKDLAVRNTARSIINNMIKGVEEGFTYKLKIVFAHFPIS
                     VKVKGKEIHVENFFGERSPRISKIIGEDTKVKVLAEDVLVEGPSLEDVSQTAANLESS
                     TKVKNKDQRVFLDGLYIYGREEGFK"
     gene            complement(1687..2079)
                     /locus_tag="VHF44_04395"
     CDS             complement(1687..2079)
                     /locus_tag="VHF44_04395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEX2124826.1"
                     /translation="MPALNVLSNLFTTLYNNETRRKKECIVMPASRFASEILRTMQKH
                     RYIGEFEQIDDDRAGKFRIQLLAKINKCGIITPRFSVKNNSYLVWERQYLPAYSMGIL
                     LVSTSSGMMSHHEAQNQGIGGVLVGYVY"
     gene            complement(2099..2278)
                     /locus_tag="VHF44_04400"
     CDS             complement(2099..2278)
                     /locus_tag="VHF44_04400"
                     /inference="COORDINATES: protein motif:HMM:NF004424.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HEX2124827.1"
                     /translation="MPKPREYAQTGRKQLAHGKGTRWCKRCGNYTGLIQKYNLMLCRQ
                     CFRDVAASLGFNKYD"
     gene            complement(2278..2808)
                     /locus_tag="VHF44_04405"
     CDS             complement(2278..2808)
                     /locus_tag="VHF44_04405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018003460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEX2124828.1"
                     /translation="MSQEQKINDLHPMRKISISKVVINIGVGKSGEPIEKAKRALHEL
                     TGQQPSVRGARETVRDFGIHKGEPIGAMVTLRREQAIEFLKRIISAKGNALKISSFDS
                     YGNISVGIHEHIDIPGTKYNPEIGIFGMDVSLSLMRPGYRIAKKRHSQKIGKAHRITQ
                     DEAIKFFQQQYGVEVV"
     gene            complement(2811..>3298)
                     /locus_tag="VHF44_04410"
     CDS             complement(2811..>3298)
                     /locus_tag="VHF44_04410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="30S ribosomal protein S4e"
                     /protein_id="HEX2124829.1"
                     /translation="IKDINFAIGLMDVVELVPTGQSYRFVPKNSELLVPINISDDEKI
                     QKLVKVTSKVTIKGKKIQYGFHDGKTLISDQRLMVGDSCVIQIPDIIINSHIKFAKGC
                     MVLVTSGENAGGIGKVDDIKDAIFSLPKRALISFADRSVELPVQLVMAIGDERPVIKV
                     S"
BASE COUNT          969 a          647 c          519 g         1163 t
ORIGIN      
        1 catgtagcaa gaaagtatgg cctccttcct atttttgttc taattgtttt acaaaaacgg
       61 agttaaagaa gttcgaaaca gtcgaaactg tgcttgaatt cacaacatcg catgtcaata
      121 acagtcgagg tacatttggt attgttgatc tggctggcat tagaattgtt ggggctatct
      181 gtggcgagct attatatgaa ggaattgagg taagaatgac gagttgcggg attaattctg
      241 atggttctgt atattatgat tttgaaccat gcaccaatag agagagaatg agagccaaac
      301 ggcttcatta atatacttta atagttgagt tatatgagcc tatgagctat gacagatttg
      361 ttgatgatcg cctcctaact agcagggatg cgttaaacaa agttcagata aaaatcaaac
      421 ttgttgatat agatgaaaac gcaagagatt actcacagag atacggtcaa agagtactaa
      481 ttaagaagat tttactttca ataaaacata cagatactga aaaatttgaa gagaaggagt
      541 tagatataga agagctcgaa tcacgtatga gaaaagaaag attgtttaca tcttctaata
      601 gatggatttt cccaagtgaa ataaagaatg gttatgtagt tgcaaataaa catcttgatt
      661 tgcttgctga tgcaatttcg ttggatgtaa ttgcattcta acaaagtatt ttccagcact
      721 catagatcac ttatatttgc aagaagttca gaggttcatg tcattttgag aatcgtcctc
      781 ctaagtaatt acaacatagt cacaataatg gaatataatt tttctttatt attgttttag
      841 aaagcctgac aactatatga ctttattatt agcgccgctg atcagactcg aactgatgac
      901 ccactggtta acagccagat aagctccgta gtagaataag gcctacgaat ttgctctacc
      961 atgctgagct acagcggcgc aatatagagc aaaatcaagc acaaaataaa tgtttacttc
     1021 cattagtata tcttaagttg tttactttca tattgcacac ctattttatg tcttatataa
     1081 tatttttcta taataaataa attgcataat gaatatgaaa ctgataggtt ttccttttaa
     1141 cttgcctact taaatccctc ttcgcgtcca tagatatata agccatcaag aaaaactctc
     1201 tgatctttgt tttttacctt agtggaagac tcaagatttg cagctgtctg tgagacatct
     1261 tctaaactag gaccttcgac taagacatct tctgctagga ccttgacctt tgtatcttca
     1321 ccaataattt tagaaattct cggcgatctc tctccaaaaa agttttcaac atgaatttct
     1381 tttcccttaa ccttgactga tatcgggaag tgagcaaaca caatctttaa cttgtatgta
     1441 aatccttctt ctactccctt gatcatatta ttgatgatac ttctcgcagt gtttctaaca
     1501 gcaaggtctt tttttctctt gccgtagggt tttatatata ttttcttgtc ttctatttct
     1561 atatatgccg gtaacttcgt aaaatccttt ctgattgtgc cattggttcc ttttattatt
     1621 aagatatctt tatccttact ggcattaact ctatctggta tttcaatgtc accattggtt
     1681 ccttcattag tagacgtagc caactagaac tcctcctata ccttggtttt gcgcctcatg
     1741 atgtgacatc attccactgc ttgttgatac aagtagaatt cccatactgt atgcgggaag
     1801 atattgtctc tcccaaacca gatatgagtt gtttttaaca ctaaaacgcg gtgttattat
     1861 tccgcatttg ttgatcttgg ctaacaattg aattctaaat ttaccagctc tgtcatcgtc
     1921 gatttgttca aattcaccga tatagcgatg tttttgcata gtacgaagga tttcgctcgc
     1981 aaatcttgat gctggcatta caatacattc cttttttctt cgagtctcgt tgttatatag
     2041 agtcgtaaac agatttgata aaacatttaa tgctggcatt atctataaca ttacctcgtt
     2101 aatcatattt attaaaaccc aaactcgcag caacatctct aaagcactgt ctacataaca
     2161 ttagattata cttttgaata aggccagtat aatttccaca tctcttacac caacgcgttc
     2221 ctttaccatg agcgagctgt tttcttcctg tctgtgcata ctctcgtggt tttggcatta
     2281 cactacttca accccatatt gttgttggaa aaattttatc gcttcatcct gagtaattct
     2341 atgtgcctta cctatttttt gactatgtct tttttttgct attctataac cgggtcgcat
     2401 taaagataaa cttacatcca taccgaaaat cccgatttca ggattatatt tggttcctgg
     2461 gatatctata tgttcatgga ttccaacgga aatatttcca tagctatcaa aagatgatat
     2521 tttcaaagca tttcctttag cagatattat gcgttttaga aattcaatag cctgttctct
     2581 acgaagtgtt accattgccc cgataggttc gcccttatgt ataccaaagt ctctaacagt
     2641 ttccctagct ccacgaacac taggctgctg cccagttaac tcatgtaaag cacgtttagc
     2701 cttttctatc ggttcaccag attttccgac acctatatta attaccacct tgcttatact
     2761 gatttttctc atagggtgca aatcatttat tttttgttct tgactcatta ttaactcacc
     2821 ttaattactg gcctttcatc accaattgcc ataactaatt gtactggtag ctcgactgac
     2881 ctatctgcaa atgatatcaa tgctcttttg ggaagagaaa atatcgcatc tttaatatcg
     2941 tcaacttttc caattccccc tgcattctct ccacttgtca ctaataccat gcatcctttt
     3001 gcaaatttaa tatgactgtt aattataata tcaggaattt gtatcacaca actatctcca
     3061 accattagcc tttgatcgct aattagtgtt tttccgtcat gaaaaccata ctgaattttc
     3121 tttcctttta tcgttacctt acttgtaact ttaactaatt tttgtatttt ctcatcatca
     3181 ctaatattaa taggtactaa caactcagaa ttctttggaa caaagcggta tgattggcct
     3241 gtcggaacaa gttctactac atccatcaaa cctattgcaa agttgatatc ctttatga
//
LOCUS       DATABJ010000271         1633 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2115914, whole genome shotgun sequence.
ACCESSION   DATABJ010000271 DATABJ010000000
VERSION     DATABJ010000271.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1633
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2115914"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1323
                     /locus_tag="VHF44_04415"
     CDS             <1..1323
                     /locus_tag="VHF44_04415"
                     /inference="COORDINATES: protein motif:HMM:NF014567.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEX2124830.1"
                     /translation="SALIDLMHAIISYNAMDDPFFLRYFIPQTWFAGRTFISAMMVIA
                     ITKFAIVPKRSEQLSQRTFITYLSLIVTLAVGISIVSFITIFPGVVIDFPIHRPYEIP
                     SLVLFSIALIYFYKNQLYRRNDVFYKGILGSLIIDIFAQIVMSYSLTFFESGHNVAHI
                     LKDTSYFVIIIALALSSVQYNKRLREREQEIRVQYEKLKEADRAQKEFINVAAHELRT
                     PIQPVLGLSDILRSKIKDSKQRELLEIITRNAKRLQRLSEDILDVTRIESQSLVLNKE
                     QFNLNDVLSNAIQDHKNEIEKTNGKLKLLYKTNDDNIFVKADRLRLSQVISNLVRNAI
                     KFTKEGDILIAVRKDDDSQVIVSVKDTGSGIDPEIEPRLFSKFASKSFEGTGLGLFIC
                     KSIVEAHGGKIWAENNADGKGATFSFSIPITSIQQANIKLVDSYDIKH"
BASE COUNT          579 a          238 c          287 g          529 t
ORIGIN      
        1 agtgctttaa ttgatttgat gcatgctata atctcataca atgctatgga tgatcctttt
       61 tttctcagat actttatacc acagacttgg tttgcaggaa ggacatttat tagcgctatg
      121 atggtgatag cgattacaaa gtttgccatt gtaccaaaaa gatccgaaca gctatcacaa
      181 agaacattca taacttattt atctttaatt gtgactttag cagtaggtat ctctattgtc
      241 tcattcatta caatttttcc aggggtagta attgattttc ctatacatag accatacgaa
      301 attccttcat tggtactatt ctcaattgct ttgatatatt tttacaaaaa tcagctttat
      361 cgtagaaacg atgtgttcta taaaggaata ctaggttcgc taataattga tatttttgcc
      421 caaattgtaa tgtcttattc tcttactttt tttgagtcgg gacataatgt agcccatata
      481 ttgaaggata ctagttattt tgtcataatt attgctcttg cattatcgag tgtacagtac
      541 aataagagat tgagagaaag agaacaagaa attcgtgttc aatatgagaa actaaaagag
      601 gcagacaggg ctcagaaaga gtttatcaat gtcgcagctc atgaattacg aactcctata
      661 cagccagtac ttggcttatc agatattctt cgctctaaaa taaaggatag caaacaacgt
      721 gaattattag aaattataac tagaaatgca aagcgattgc agaggctttc tgaagatata
      781 ttggatgtaa caagaatcga gagtcagtca ctagtactta ataaagaaca attcaattta
      841 aatgatgtac tatcaaatgc catacaagac cataaaaatg aaattgaaaa aactaatggt
      901 aagttgaaac tattatacaa aactaatgat gacaatattt ttgtaaaggc agacagactc
      961 agactgagtc aagttatttc taatctagta agaaatgcca ttaaattcac taaagaaggt
     1021 gacatattga ttgctgtaag aaaagatgat gatagccaag tcattgttag cgtcaaggat
     1081 actggttcgg gcatagatcc ggagattgaa ccaagattat tttcaaagtt tgcttcaaag
     1141 tcttttgaag gtacaggatt aggattgttt atctgcaaaa gtattgttga agctcatgga
     1201 ggtaagatat gggctgagaa taatgctgat ggaaagggag ctacatttag ttttagtatt
     1261 ccaataactt ccatacaaca agcaaatata aaattagttg attcatatga tatcaaacat
     1321 taagaaaatt ttgatgattg ccattatgag gatcccactg ctagtttaag gattgattag
     1381 ttaaccttta gaagacaata gaattcgact ctattcctac aatgatttgc taaaaagaca
     1441 tatatctata tcaacggatt tactataggc aatcaatcaa taatcataat atcattaggg
     1501 acaggtgtat agcaatatta ttgcttgctc ggtaatattg aaaagtaatc caatgccaca
     1561 taggtaaata catatgcaca tcatttatca aattgacaat agtttactag atattggata
     1621 ttatttatga tgg
//
LOCUS       DATABJ010000272         7730 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1716107, whole genome shotgun sequence.
ACCESSION   DATABJ010000272 DATABJ010000000
VERSION     DATABJ010000272.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 7730)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7730)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7730
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1716107"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..356)
                     /locus_tag="VHF44_04420"
     CDS             complement(<1..356)
                     /locus_tag="VHF44_04420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin carboxylase N-terminal domain-containing
                     protein"
                     /protein_id="HEX2124831.1"
                     /translation="MATKISSILIANRGEIALRVIRACRELGIKSIAIYSDEDARSIH
                     VRRADEAYHIGPAAASESYLNVDKLIELANRVGTDAIHPGYGFLSENEKFAETCERNG
                     IIFIGPKSNAMEVTGD"
     gene            complement(375..1916)
                     /locus_tag="VHF44_04425"
     CDS             complement(375..1916)
                     /locus_tag="VHF44_04425"
                     /EC_number="6.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016874 - ligase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA carboxylase subunit beta"
                     /protein_id="HEX2124832.1"
                     /translation="MHEEKIKKLYNMKKMAEGGGGEDKVESQHSKGKLTARERISLLL
                     DEGTFIEIDKYVTHRSDDPETTKYYGDGVITGFGTINGRQVFLYAYDFTILGGSLGEM
                     AGKKTVKIMDHAIKAGAPLIGIIDSGGARIQEGVMSLDGYGDVFFRNTMASGMIPQIT
                     ASIGPCAGGAVYSPAMTDFVIMTENVSQMFVTGPEVVKEVLSQEVSFEELGGARTHAS
                     KSGVAHFIAKNEYECMDKIKKLLSFIPQNNTEEPPLIEGTDDVNRIDPNIINILPENP
                     YEQYDMRQIIKSLVDNGEFFEIHELFAENILVGFARLGGRSVGLIANQPMYLAGALDI
                     NSSNKAARFIRFCDAFNIPIVTLVDTPGYLPGTDQEHNGIIRHGSKLLYAYCEATVPK
                     ITCIIGKAYGGAYIAMGSKNLRADVNYAWPTAEIAVLGPEAAITIIHRRDLKGSADAI
                     AIKKKLAKEYREKYANPYIAAEKGIIDLVIDPMETRPMIIRAIEALANKRESRPWKKH
                     GNINL"
     gene            complement(2107..2319)
                     /locus_tag="VHF44_04430"
     CDS             complement(2107..2319)
                     /locus_tag="VHF44_04430"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124833.1"
                     /translation="MSSEYEQNVGTLLAEKIEKLEELEKNPDAKNVQKKILMSEIETL
                     QSLFENYNLGMNYFRRARGGRTGLRE"
     gene            complement(2718..3956)
                     /locus_tag="VHF44_04435"
     CDS             complement(2718..3956)
                     /locus_tag="VHF44_04435"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2124834.1"
                     /translation="MMWSEVYRPMRVQQMIGNEGARLAVVKWLSGWVDGSRPLLLIGP
                     PGIGKTTLVHTLSHQFNYDLIELNASDNRNKIGLQNRIMPMFHNAGLFGRKMLLFLDE
                     VDGISGREDTGGIDSLITIMKEPTIPVIMAANTKNTKIKDLAKICKVIELTSIPPRLL
                     MIYLDHILKEENEKLSPDEKVSVVNNSKGDIRSMLNNAQSKCAGYNSTHNETFEIDIA
                     EAINGYFSMSELEEAKNFLSHADAAYLDPRFGMSAEERRKDMINALFSSIVSSPIDLD
                     GLADALAVLSKIDVIVGRIGQNRYWRLMKYLDVMIAYGLFSSTRKKGIKYNQYGVIWP
                     LMNPIFVRAQYMKNLLSDLSKQTHVTKSIFGSIYFPYLLQILADKKIDPREFSNISNL
                     DEKSGDALTKEMDLVMGKKK"
     gene            complement(4411..5544)
                     /locus_tag="VHF44_04440"
     CDS             complement(4411..5544)
                     /locus_tag="VHF44_04440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124835.1"
                     /translation="MSGKDEHIFTKAALVSTRSGKEILKRILLRENGYKQFAKYKQKY
                     EKEFDDFTKRFIMSLHQRINYDSSPSATMKKFTGEMGSSELILDDTKLNDVKTRLSRP
                     EILADRIRRILDSNFVKMTFPVFNALFDGASSYYKEEISKDLKNSLIDGHIIAIDLSE
                     PMDRIIDEDEDTEYLDDYKLMNPYILEIAREKISKGGDSVLKAFEEGFKDARLGQYID
                     YKMKTKSESINYENMIISYKKYRAVMGTAGRNMAFNRPPLGDIFHLGMANAAECVGCG
                     NEIQDAIKQQSIKIPSWPLYYSLISKDVRKAFEITMKKSEIYLKEADLAIRMLPLDFQ
                     LKPFLEFLFLTVNNYNQYWYNELVRGDMLDSFQKDLNMSVRQR"
     gene            complement(5798..6406)
                     /locus_tag="VHF44_04445"
     CDS             complement(5798..6406)
                     /locus_tag="VHF44_04445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEX2124836.1"
                     /translation="MSGREQVNIMLFNKWDTTKIEVADIGLSRVISLKPASVIPITFG
                     RHEHQRLKKSDVNIIERLSNKMMHFGKKYAKNTGRMGGKKARVLNVVRTALDIIHIET
                     GKNPVELLVRAIENASPNEDTTRIVYGGVVYHVSVDVAPLRRVDLALRFIAEGVREAT
                     YSNPQTIEEALAREIILASNNDMTSHAVKKKNEQERIAMASR"
     gene            complement(6410..6850)
                     /locus_tag="VHF44_04450"
     CDS             complement(6410..6850)
                     /locus_tag="VHF44_04450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_018039449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEX2124837.1"
                     /translation="MMAKSPLGLFAGRVLRSKRNRGRWANKYYKRRMLMLDKKANPLE
                     GAPQARGIVLEKVGIESKQPNSAVRKCVRVQLIKNGKSITAFLPRDGALNFVDEHDEV
                     LLEGIGGSMGGAMGDIPGVRWQVFKVNGVSLKELVYGRKEKPRR"
     gene            complement(6847..7326)
                     /locus_tag="VHF44_04455"
     CDS             complement(6847..7326)
                     /locus_tag="VHF44_04455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NusA-like transcription termination
                     signal-binding factor"
                     /protein_id="HEX2124838.1"
                     /translation="MTDKIKLTSDELRLMSLFQSITSATARDCILDERMDRVIFIVHK
                     GHMGLAIGKGGSTIKQLQNVVAKKVELVEYSDDPCKFISNILNSELINEIKINERIDG
                     TKQAVVIVDAKKKGVVVGREGRNAEKARILAKRYFQISNVLIVSGEQTLNNDKQVNI"
BASE COUNT         2217 a         1625 c         1168 g         2720 t
ORIGIN      
        1 ttatctcctg taacttccat tgcattgctc ttcggcccga taaatataat gccatttctt
       61 tcacatgtct ctgcaaattt ttcgttttcg gatagaaagc catatcctgg atgaattgca
      121 tctgttccca ccctgtttgc caattcaatt aacttatcga cattaagata actctcagag
      181 gcggctgccg gaccaatatg ataagcttca tctgctcttc taacatgtat tgatcttgca
      241 tcttcatctg aataaatcgc tattgatttt attcctaact ctctgcaagc tcttataact
      301 ctaagagcaa tttcgcccct gttcgcaatt aaaatgctag aaattttggt cgccaatttt
      361 tgttcaccat attattatag gtttatgttt ccatgtttct tccatggtct tgattctctt
      421 ttattggcta aagcctcaat agcccgaata atcatcggtc ttgtctccat cggatctatc
      481 accaaatcaa taataccctt ctctgctgct atatacggat tagcatactt ttctcgatat
      541 tccttagcga gcttcttttt tattgctatt gcatctgcag atcccttcag atctcttcta
      601 tgtatgatgg taattgctgc ttctggtcct agtactgcta tttccgctgt tggccaggca
      661 taatttacat cagccctcaa atttttgctt cccatagcaa tatacgcacc gccataagct
      721 ttgcctataa tgcaagtgat ttttggaaca gtcgcttcac aatatgcata gagcaacttg
      781 ctcccatgtc ttatgatacc gttatgttct tgatccgttc caggaagata tccaggcgta
      841 tcgacgagag tcacgatcgg gatgttaaaa gcatcacaga accggatgaa acgtgcagct
      901 ttgtttgatg aatttatatc aagtgctcct gccagataca taggctggtt ggcaatcaga
      961 cctactgacc ttcctcccag tcttgcaaaa cctaccaata tattctctgc aaaaagttca
     1021 tgaatctcaa aaaattcgcc gttatcaact aaagatttta ttatttgtct catgtcatac
     1081 tgttcatatg gattctctgg caaaatgttt atgatattag gatctatcct attcacatcg
     1141 tctgtgccct ctattaatgg gggctcttct gtattatttt gcggaataaa tgataacaat
     1201 ttttttattt tatccataca ctcatactca tttttggcga taaaatgtgc tacgccagat
     1261 tttgaggcgt gggttctagc accgcctaat tcttcaaatg acacttcttg actcaagact
     1321 tccttcacca cctcaggtcc agtaacaaac atctggctaa cattttcggt cataataaca
     1381 aaatctgtca tggcaggaga ataaactgcc ccgccggcac aaggtccaat acttgcagta
     1441 atctgtggta tcatacctga tgccattgta tttctaaaaa agacatcgcc atatccatca
     1501 agactcatca caccttcctg aattcgtgct ccaccagagt ctataatgcc aataaggggt
     1561 gccccagcct ttatagcatg atccataatc ttaacagtct tcttccctgc catttcaccc
     1621 aatgatcctc ctaatattgt aaaatcatat gcatagagaa aaacctggcg accattgatt
     1681 gtaccaaatc ctgtaataac gccatcacca tagtatttcg tagtttcagg atcgtcgctt
     1741 ctatgagtta catatttatc aatctcaata aaggtacctt cgtctaaaag aagactaatt
     1801 ctttctcttg cagtaagttt accttttgaa tgctgagatt ctactttgtc ttcgccgcca
     1861 cccccttcag ccattttttt catattatat aatttcttta ttttctcctc atgcatggcc
     1921 ttgtattaat cccaagagtt gcctatataa attcattaca ataaaattta ctatttaaaa
     1981 taatgtgcta cattcttgtt cagccaaggc aaaaaaattc agtttctgca taattgggtt
     2041 ttactagact tcaattgtac gggaaaaacg actaatgacc cacaactatt acagaaagga
     2101 aataagctat tctctaagtc cagttcttcc acctcttgct ctacgaaaat agttcattcc
     2161 tagattgtag ttttcgaaaa gagattgcag ggtctcaatt tcagacataa gtattttttt
     2221 ttgaacattc ttagcatctg gattcttttc taattcttct agcttttcta ttttttcagc
     2281 tagaagtgtt cctacatttt gttcgtattc actagacata tgtattcaag agtttactat
     2341 catttagatt tgaacctttg ctattctatg catttattta ataaagattc ctagtaattt
     2401 ttgatatact ttgtaatctc tcaatcattt attgcggacg catgcttgta aaaccatagt
     2461 cttttataat cctcttcaaa atcgcaatca actggttggc tgaattacta taaatgaaac
     2521 aatcaactac agcttttctg ccaaataaat actctttgga gagaattgag tcttccagaa
     2581 gcaggcattc tatatgtttg aaaagtcttg agaatattga tcattagcaa attctcccga
     2641 tcgtaattac tttctccatt tgcaccttct tttgtatttg aataacagtc ttgcttgctc
     2701 ttcatgtaat ggttcactca tttctttttt cccattacaa gatccatttc tttcgtcaaa
     2761 gcatccccag acttttcatc aaggtttgaa atatttgaaa attctcttgg gtctattttt
     2821 ttatcagcta gtatttgaag aagatatgga aaataaatcg atccaaagat actttttgtt
     2881 acatgagtct gcttcgatag atccgatagt aaatttttca tatattgagc tctgacaaaa
     2941 atagggttca ttaaaggcca tataacacca tactggttgt attttattcc cttcttgcga
     3001 gtactgctaa ataggccata tgcaatcata acatcgagat acttcataag cctccaatat
     3061 ctattttggc ctattctccc aactattaca tctatctttg aaagtaccgc taaagcgtct
     3121 gcaagaccat ctagatctat aggcgaagaa acgatgcttg aaaaaagtgc atttatcata
     3181 tcttttcgtc tttcttccgc tgacatccca aagcgcggat caaggtaagc ggcatctgcg
     3241 tgagataaga aattctttgc ttcctcaagt tcactcatgg aaaaataacc atttatcgct
     3301 tcagcaatat caatttcaaa tgtctcgtta tgagttgaat tatacccggc acatttagac
     3361 tgtgcattat ttaacattga acgaatgtct cctttgctat tattcacaac tgaaactttc
     3421 tcatcaggac ttaatttctc gttctcctcc tttagaatat gatctagata aatcatcaac
     3481 aatcttggtg gaatcgaagt taattctatg actttgcaga tctttgcaag atctttaatc
     3541 tttgtattct ttgtatttgc tgccatgata acagggatcg ttggctcttt cattatagtt
     3601 atcagagaat caattccacc tgtatcctcc ctgccagaaa taccatcaac ttcatccaag
     3661 aataatagca tttttcttcc aaaaagtccc gcattatgaa acattggcat gattcgattt
     3721 tgaagaccta ttttgttcct attatcgctc gcgttcaatt ctattaaatc ataattgaac
     3781 tggtgtgata atgtatgtac gagtgtggtc ttacctatgc ctggtgggcc tattagaagc
     3841 aacggcctac taccatctac ccatcctgag agccatttta cgactgccaa tcgagcacct
     3901 tcgtttccta tcatttgctg gactctcata ggtcggtaaa cttcagacca catcataatg
     3961 atcaatcgct aattcaaaaa aagtaatata aatacatgca gtatcttggt tttaataacc
     4021 taagttgtta gccctataac ctaaaggtga atgtctcata tagcaatttc atgatgatgg
     4081 catgcaatgt atcaaacagg ttatgcttta gtagctagga ttgacatcta tatattataa
     4141 ttctaagtta tagatttaca tccatcttag aatcaattgc aaaaatgaga catatctcta
     4201 gtttgaaata gtattggata ttctaaacaa gcccgataga tttgtaatag cttaatgaag
     4261 agtcaaggag attttgtaaa tgaaagattg ttaagaaaat aaatgtttag ggttaaggct
     4321 atgaacatta gcatatattc tacttcaaat ttacaaatat gtttgacgtt tcatagacca
     4381 agagataaag aactagtttt gtaggagccc ttatctttgt cttactgaca tgttaaggtc
     4441 cttttgaaaa gaatcaagca tatcgcctct tacaagttcg ttataccaat attggttata
     4501 attattaact gtcagaaata aaaattctaa aaatggtttg agttgaaaat ctaatggaag
     4561 catacggatt gcaaggtctg cttcttttaa gtaaatttca ctttttttca ttgttatttc
     4621 gaatgctttc ctaacatcct tgctaatgag tgaatagtag agaggccatg atggtatttt
     4681 aatagactgt tgctttatag cgtcctgaat ctcatttccg caaccaacac attcagctgc
     4741 gtttgccatg cctaaatgaa atatatcacc caaaggagga cgattaaatg ccatattcct
     4801 tccggcagtt cccattactg cacgatattt cttataactg ataatcatat tttcatagtt
     4861 gatagattct gactttgtct tcatcttata atcaatatac tgtcccagtc tagcgtcctt
     4921 aaagccctct tcaaatgctt ttaacacaga gtctccacct ttggaaattt tctctcttgc
     4981 aatttccaga atatagggat tcataagttt atagtcatca agatattcgg tgtcctcatc
     5041 ttcgtcaatt attctatcca taggctcact aagatcgata gctataatat gaccatcaat
     5101 aagtgaattt ttcaagtctt tggaaatttc ttccttatag tagctagaag ccccatcaaa
     5161 caatgcattg aaaactggga aggtcatctt aacgaaatta gaatctaaga tcctccgtat
     5221 tctgtctgcg agaatttcgg gtcttgataa tcttgtttta acgtcattga gtttcgtgtc
     5281 atctaggatt agttctgaag aacccatttc accagtaaat tttttcattg tagcagatgg
     5341 gctagaatca taattaatac gctgatgtaa cgacattata aatctctttg taaaatcgtc
     5401 aaattccttt tcatattttt gcttgtattt agcaaattgt ttataaccat tttctcgaag
     5461 tagaattctt tttaagattt cttttccaga tcttgtgctc actaaagcag cctttgtaaa
     5521 gatatgttcg tccttaccac tcatattgct ctcactctag agtctaatta tttaactttc
     5581 atacaatgca aatgtcaacg ttatcagata ctactactaa tgctccacat aatacaatga
     5641 ccattatagg accatatatc tcaattttga agttatcatt attataattt caatagatta
     5701 cattgcacaa gaatggcatt tttaacgatt cggttcaatt cagaaaagac taaacattgt
     5761 catcatatac agacaaaaaa tgaaaaagaa tgcagcccta acgagaagcc attgctatac
     5821 gttcctgttc attctttttc ttaacagcat gacttgtcat atcattattt gatgccagga
     5881 ttatctctct tgctaatgct tcttcaatag tctgtgggtt tgaatatgtt gcttccctta
     5941 cgccctcggc tatgaaacgc agcgcaaggt ctactcttcg tagcggcgct acatctaccg
     6001 aaacatgata tacaactccg ccgtagacaa tacgagttgt atcttcatta ggagatgcat
     6061 tttctatcgc ccttaccaat aattccactg gatttttacc tgtttctatg tggataatat
     6121 caagagcagt tcttactaca ttcaacacac gggctttttt tcctcccatt ctacctgtat
     6181 tctttgcata tttttttcca aaatgcatca tcttattaga taatctttct attatattta
     6241 cgtcagactt ctttaatctc tggtgctcgt gtcttccgaa tgtaattgga atcactgatg
     6301 ctggtttcaa tgagataact ctacttaggc ctatatcggc tacttcgatc ttggttgtat
     6361 cccatttatt aaataacatg atatttactt gttctctgcc gctcatttac tatctcctcg
     6421 gtttttcctt cctaccatag acaagttcct ttaacgacac accatttact ttaaaaactt
     6481 gccatctaac accgggaata tcacccattg ctcctcccat tgacccccca atgccttcta
     6541 ataatacttc gtcatgttcg tcaacaaagt tcagggcacc atcccgtgga agaaaagctg
     6601 ttattgattt accatttttg atcagctgaa ctctgacaca ttttctgacc gccgaattgg
     6661 gctgttttga ctctatacct actttttcta atactatgcc cctcgcctgc ggcgcaccct
     6721 ctaatggatt tgccttctta tctaacatca acatccttct tttgtaatac ttgtttgccc
     6781 atctgcctcg gttcctctta gatctcagaa cacgcccagc aaatagtcct aacggagatt
     6841 tagccatcat atattcactt gtttatcatt atttagagtt tgttccccac ttactataag
     6901 aacattggat atttggaagt atcgctttgc aagtattctc gccttttcag cattcctccc
     6961 ttctctgcct acaacaactc cctttttctt ggcatctaca ataacgaccg cttgtttcgt
     7021 accatcgatt ctctcattaa tcttaatttc gtttatcagc tctgaattta atatattaga
     7081 aataaatttg catgggtcat cggaatattc aactagctca accttttttg caactacatt
     7141 ttggagttgc ttgattgtcg atcctccctt tccgatcgcg agacccatat gtcccttgtg
     7201 aacaataaat ataacacggt ccatcctttc gtctaaaata caatctcgcg ctgttgcgct
     7261 tgttatgctt tgaaatagag acattaaacg caattcgtca gaagttaatt taatcttgtc
     7321 tgtcatatta taggacccct gaaacagaaa ataatagtcg aaattggaaa cattaaacga
     7381 cacttcatgc ttcttaaaga agagcaattt aagtcttgat gctgacaaat taatcatcac
     7441 ttcgaaaaga ttttttaaca gacagtcttg cgtgtgccgt tatcttactt atcctaatga
     7501 atttaataat gcaatggtgt atactatttt ctgctgatgt attactagta taatttgctt
     7561 ttgtaatgga aaagcaattt ccattttctc aaatgtaatc gagaatagtc tctctatgaa
     7621 gtgttggttg ttagatttcc cttaggctga ctagagatta ttgagctaat ctcttcatta
     7681 ctaccgcttt tgatagaaat aatactaatt ctaaaaggct tattacataa
//
LOCUS       DATABJ010000273         1719 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_165078, whole genome shotgun sequence.
ACCESSION   DATABJ010000273 DATABJ010000000
VERSION     DATABJ010000273.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1719)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1719)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1719
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_165078"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            179..>1719
                     /locus_tag="VHF44_04460"
     CDS             179..>1719
                     /locus_tag="VHF44_04460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family NAD(P)-dependent oxidoreductase"
                     /protein_id="HEX2124839.1"
                     /translation="MEKDSLKSYSNFNGKNVVITGSGTGIGQAIAKKFAENGANIIIM
                     GRRKEPLDSTSTILIDIFNRYGYSSKIRSFPGIDVSDEHGINEMFKTIKQEFGKIDLV
                     VNNAGVSGPVKTFTNANFKEFKECVAIHLTGTFWTSIQSLQAMEPGAKIITIGTFFTE
                     ENRYEQRPYRFRTPYTAAQGAKNRLAEALAWELMDKGIRSVGTNPGPVHSDRIYKTVY
                     PKAAAEFLRIGGFPGLSATEVERAATKALSLLGEENATVKKGIEEIAKELTKSRRVES
                     SDETEELFNVVSNMLGKIQEIAEKIQNNTSKMSVDGQFLRQEDVAEMVLNLSDQQISK
                     LINGRIIPNDHIFYPVKPIVGTVLETDVPASINGKVVVLTITSSAKKDLDRVEKLARI
                     LSSFGAEQIIILTSNSSDLLRFKDFHSHCIDLSSEEHVRSILKTVRTKFGALDAVVHF
                     TGDYDYNIPLSTLSRNQWDSLVENFVNIPALITREAVNKMAAEGATEEPIKYKGSNGI
                     LVLVGP"
BASE COUNT          602 a          265 c          354 g          498 t
ORIGIN      
        1 gactaaaaat aatcaaaatg tctgtttagt attggtaacc ttctgagaag cctgatggaa
       61 agagcaaatc aatggatact atactattag aataagtatt aactctttag gtttttttaa
      121 tttttaatta taatgtcatc aaggttaact ttaataatgt atatattgtc ccaaatctat
      181 ggagaaagat tcattaaaat cttactcgaa ctttaatggt aaaaatgtag ttatcacagg
      241 cagtggaact ggaataggcc aggcaatcgc taaaaaattt gcggaaaatg gtgctaatat
      301 aatcatcatg ggtagaagaa aggagccgtt agatagcacg agtacaatat taattgatat
      361 tttcaatagg tatggctatt ctagtaaaat aagatctttt ccaggtatag atgtatctga
      421 tgagcacgga attaacgaga tgttcaaaac tattaaacag gaatttggaa aaatcgatct
      481 agtcgttaat aatgctggtg tatcgggtcc tgttaagaca tttactaatg caaatttcaa
      541 ggagttcaaa gagtgtgtag ctattcatct tacaggaact ttttggacat caattcagag
      601 cctacaggca atggagccag gggccaagat aattacaatc ggaactttct ttacagaaga
      661 aaatcgatat gagcaaagac cttatagatt cagaactcct tatacagccg cgcaaggagc
      721 taagaataga ttagcagaag ctttggcatg ggaattaatg gacaaaggta tcaggtcggt
      781 aggcactaat cccggaccag tccactcgga tagaatttat aaaacagttt atccaaaggc
      841 tgctgcggag ttcctaagaa ttggaggatt cccaggattg tcagcaaccg aagtcgaaag
      901 agctgccact aaggcgctgt ctctactagg tgaagaaaat gctactgtca aaaagggcat
      961 tgaagaaatt gcaaaggaat tgaccaaatc acgcagagta gaatcttctg atgaaactga
     1021 agaactcttc aatgtagttt caaatatgct cggtaaaatc caagaaatcg cagagaagat
     1081 acagaacaat acaagtaaaa tgtcagttga tggacagttt cttagacaag aagatgttgc
     1141 tgaaatggta ttgaatttgt ctgatcaaca aattagcaaa ttgataaatg gtaggataat
     1201 tccaaatgat catatattct atccagtaaa gcctatagta ggaacagttc tcgagactga
     1261 tgtacctgca tctataaatg gaaaagttgt ggttcttact attacctctt ctgcgaaaaa
     1321 agacctagat cgtgttgaga aattggcacg aattctaagc tcatttggtg ctgaacagat
     1381 aattatattg actagtaatt catctgatct tttacgattt aaggattttc atagccattg
     1441 cattgatctt tcgtcagagg agcatgtaag aagtattttg aagacagtta gaacaaagtt
     1501 tggagctcta gatgctgtag tacattttac cggtgactat gattacaata ttcccctttc
     1561 aacactaagt agaaaccaat gggattctct tgttgagaat tttgtaaata ttcctgccct
     1621 aattacaaga gaggcagtaa ataaaatggc tgctgaaggc gcaactgaag agccgattaa
     1681 atataaagga tctaatggaa ttttagtatt agttggacc
//
LOCUS       DATABJ010000274         1785 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_644595, whole genome shotgun sequence.
ACCESSION   DATABJ010000274 DATABJ010000000
VERSION     DATABJ010000274.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1785)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1785)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1785
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_644595"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..698)
                     /locus_tag="VHF44_04465"
     CDS             complement(<1..698)
                     /locus_tag="VHF44_04465"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEX2124840.1"
                     /translation="MSDVLQLMKLKGKVAIVTGAGGGVGKSITQRLLSEGSKVVLIGR
                     RRDTLMRSIAEVGGDNKNVLPVTADITKEAEVLNAIEQALSSFDRVDILINNAGIIYD
                     PTPFHLMTEDQWTGLINTNLLGTFRTTKAVLPIMIDRKGGCIVNISSLLGMRSIPNVP
                     FSVYGVTKAGVIMFTKSIAVEYGPYGIRCNCIAPSTIRSPMIEPYLQDENAKKLLESS
                     FPLRRIGEPDDISSA"
     gene            805..>1785
                     /gene="purK"
                     /locus_tag="VHF44_04470"
     CDS             805..>1785
                     /gene="purK"
                     /locus_tag="VHF44_04470"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: protein motif:HMM:NF004675.0"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004638 - phosphoribosylaminoimidazole
                     carboxylase activity [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HEX2124841.1"
                     /translation="MIDNSRNSMEIQNPITIGIIGGGQLGKMIAQDAKRMSFRVIILD
                     PCYDSPASSISDEHIVADFKDENAIRTLANKSDVLTYEIELANSETLKELESKNFIVH
                     PSPQTLSIIQNKFRQKSFLKDHGIPVAEFDIIKSESHLVNLCNRLGYPSVLKVCENSY
                     DGRGNYIIRSANNIHEYYEYLSERQCMVEKFVDYEKEISVMVARNSSGQISSFPIAEN
                     IHRNSILDTTIVPARISDNAIAKAEELAERTMRALKGSGIFGIEMFLTKDEDVLVNEI
                     APRPHNSGHYSIEACSISQFEQHLRAILNLPLPKPELLSPVVMINILGPDD"
BASE COUNT          569 a          339 c          325 g          552 t
ORIGIN      
        1 gcactagaaa tatcatcggg ttcgccaatt ctgcgtaagg gaaatgatga ttcaagaagt
       61 ttttttgcgt tttcatcctg caaatatggt tcaatcatag gactgcgaat ggtggatgga
      121 gctatgcaat tgcagcggat cccgtagggt ccgtactcaa cagcaatact ttttgtaaac
      181 atgataactc cagccttggt aacaccatac acggagaatg gtacatttgg gatcgaccgc
      241 attccaagta aagaggaaat attcacaata cagccgcctt ttctatctat cattatcggc
      301 agtaccgcct tcgtagtcct aaatgttcca agaagattcg tatttatcag tccagtccat
      361 tggtcttctg tcattaaatg gaatggcgtc ggatcatata ttatgcctgc gttattaatc
      421 aaaatatcaa ctctatcaaa tgatgaaaga gcttgttcta tagcatttaa tacttctgcc
      481 tcttttgtaa tatctgcagt aactggcaaa acattcttgt tatcgccacc aacttctgct
      541 atagagcgca ttagtgtgtc ccgccttctt cctataagta ctaccttgga tccttccgaa
      601 aggagtcttt gtgttataga ctttcctacc cctccgcccg cacccgtgac tattgcaact
      661 ttgcctttca atttcattaa ttgaagaacg tcagacattc tttttaaagt acttttcgga
      721 aatagtaaag aatatacaat tgaaaatttc gttactcaaa aagaatgctt ttaatttcac
      781 tttttaagaa ggatcaaacg ctttatgatt gacaatagtc gaaacagcat ggagatacaa
      841 aatcccatta ctataggtat aattggagga ggacaacttg gaaaaatgat tgctcaagat
      901 gcgaaacgaa tgtcttttag ggtaattata ttagaccctt gctacgactc acccgcatct
      961 tctatttcag acgaacacat tgttgccgat tttaaagatg aaaacgctat taggacactt
     1021 gccaataaat ccgatgtatt aacttatgaa atagagcttg ccaattctga gacacttaag
     1081 gaattagaat ctaagaattt tattgttcat ccttcaccac agacacttag cataatacaa
     1141 aacaaattta ggcaaaagtc atttttgaaa gatcatggta tccccgttgc agaatttgac
     1201 attataaaat cagagtcaca tttggttaat ctatgtaata gattgggtta tcctagtgta
     1261 ttaaaagtat gtgaaaattc atatgatggg cgaggaaatt atataattag atcggccaat
     1321 aacattcacg aatactatga atatctctct gagagacaat gtatggtgga aaaattcgtt
     1381 gactatgaga aagagatctc tgtgatggta gccagaaata gtagcggtca aatatcttct
     1441 tttccaatag cagaaaatat tcatcgtaat agtattttag acactaccat tgttccagcg
     1501 agaatttcag ataatgcaat cgcaaaagct gaagaattag ctgaaagaac catgcgtgca
     1561 ttgaagggat ctggtatttt tgggatagag atgtttctca ctaaggatga agatgtgctg
     1621 gtaaatgaaa tagctcctag gcctcataat tctggtcatt actctataga agcatgttca
     1681 atttcccaat ttgaacaaca tctccgagct attcttaatt taccattacc aaaaccagag
     1741 ctgctatcac ctgtcgttat gatcaatata ctaggccctg atgac
//
LOCUS       DATABJ010000275         6288 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_168609, whole genome shotgun sequence.
ACCESSION   DATABJ010000275 DATABJ010000000
VERSION     DATABJ010000275.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6288)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6288)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6288
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_168609"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(128..919)
                     /locus_tag="VHF44_04475"
     CDS             complement(128..919)
                     /locus_tag="VHF44_04475"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003755 - peptidyl-prolyl cis-trans
                     isomerase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="FKBP-type peptidyl-prolyl cis-trans isomerase"
                     /protein_id="HEX2124842.1"
                     /translation="MTLERGSLILVDYTAKVKDSNEIFETTREEEAKKFELFDPTHKY
                     EPKLISIGEGWVLKGLDEALAAANIGDKINVEITPDKGFGERDPNKVRMVAQRKLGEK
                     ADEVRVGDVIEIDHRTGIVRYVGSGRVQIDFNHRFAGRTLTYDVDVVKKVESNDDKIR
                     SLIKRRLPIDDEKIKINLKGSTLEIELPEETLLAEGLQIIKRAVANDVFKFVPSLKDI
                     KFIESFRSPTLSQHQQENDQNAKIERPVDAKSEDNEIKTVGSNNT"
     gene            complement(997..2142)
                     /locus_tag="VHF44_04480"
     CDS             complement(997..2142)
                     /locus_tag="VHF44_04480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--glyoxylate aminotransferase family
                     protein"
                     /protein_id="HEX2124843.1"
                     /translation="MEYLVMLPGSTNVPNRVMNAMLAPIINHRSDDFRILYRDIVEKT
                     QKVFLTTNDIILLTASGTGAVEAAVVNLIRKGDKIIIPVNGEFGTRLADLIDSWGGQA
                     IRVTAPFGENPPYEKIEEVFDKNKDIKAIYTVYNETSTGTTLRYMDKIGELSARKGTF
                     FIVDAVSILGGDELPVDKWNVDICVTASQKAIAAPPGVSPISISPRTKQYMQSNPPPT
                     QYLNLKRYFKYYEEHYETPFTPALPLFYAFREALNLILEEGLDKRIKRHRICADAFYS
                     GLSSMGLTPFAKPNARSSVVISLNYLPGMDDKKFRSLLSDDFKILIAGGFGELKGKVF
                     RIGSMGEVSKYHVMRTLSSISSAMNILGFNVNPEATSIALKKVKDLE"
     gene            2233..3318
                     /locus_tag="VHF44_04485"
     CDS             2233..3318
                     /locus_tag="VHF44_04485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M24 family metallopeptidase"
                     /protein_id="HEX2124844.1"
                     /translation="MIKLRRLNLLEHANKFGCNVIAAFQPENIFYLTGFWGEGIAICT
                     ESVTTLLTPKLEVGRALQESKECDVVSTERGDDLIYSLISNVDKKMTCTDCSDHAIIR
                     KIQDEIGAKSLIVNVEPFFLTRIIKDEEEIEMIEMAARILDTLYRICTEEIKVGLSER
                     ELQARLLFEAMKLGTYPTSYKASLNPFIIAGGPNAALPHAQVSDRKFIKGDVIIVDLT
                     LRYNGYIADATRTFALGTATSEIRKIYDIVKKSQQAGLDALHPNIMCGQVDAICRRII
                     SEEGYSEYFIHSTGHGIGLDVHEPPWLRIRNEERLKVNMALTIEPGIYLQGKFGIRIE
                     DSVIVGSEPDGRARILNGFTKDLLELD"
     gene            complement(3419..4702)
                     /gene="coaBC"
                     /locus_tag="VHF44_04490"
     CDS             complement(3419..4702)
                     /gene="coaBC"
                     /locus_tag="VHF44_04490"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004632 - phosphopantothenate--cysteine
                     ligase activity [Evidence IEA];
                     GO_function: GO:0004633 - phosphopantothenoylcysteine
                     decarboxylase activity [Evidence IEA];
                     GO_process: GO:0015937 - coenzyme A biosynthetic process
                     [Evidence IEA];
                     GO_process: GO:0015939 - pantothenate metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEX2124845.1"
                     /translation="MDAKRRTEFYSSKDITGIDGREIEGKKIVLCITGSVAAYRSIDL
                     ARQLIRHGAEVYPVMSEAVASTLLTPEMLEWATGNNVVTKITGSLEHIALADYNMSDL
                     IVVYPCTANTIGKVANGINDTPVTSVLSVALGSRIPIIIAPAMHESMYDNRLIQENIQ
                     RVKDQGVDFLQPIITEGKAKVVSPEQMLQSVITKFTDSTGSFFFEKNILVTAGSTIEY
                     IDPIRVITNLSSGKMGNIIAEEAIRMGANITLVYGHGTYSAKSLPNLNILRVNTSKEM
                     YDVVMSELSSKRYDVAILSAAVADYTPERKAIKKIGTSRGKLLLPLSPTQKIINHVKH
                     ISKQTFLVGFKAEYNVSDSNIIKGAYRKLKECKGDLIVANDVGRKNSVIGSENNEVFL
                     IDKHRNILHLPPQNKNSIARKLLNVIENLITHNKL"
     gene            complement(4707..5585)
                     /gene="panB"
                     /locus_tag="VHF44_04495"
     CDS             complement(4707..5585)
                     /gene="panB"
                     /locus_tag="VHF44_04495"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003864 - 3-methyl-2-oxobutanoate
                     hydroxymethyltransferase activity [Evidence IEA];
                     GO_process: GO:0015940 - pantothenate biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEX2124846.1"
                     /translation="MQDTDNSIFNRKRVSVKDIIMMKQKLEKISVLTAYDYSTASICD
                     RAGVDVLLVGDSAGMVMLGYPTTNQINMEEMLTFCSGVSRGVNRAMIIADMPFGSYQV
                     STSEAIANAIRFIKVGCHAVKLEGGIEIIDTVKAIVKTGIPVMGHIGLKPQTSTLWEG
                     YKLQGKTKFSGLKLIEDAKALEEAGVFSIVLEMVTSEVADIISKNICIPTIGIGSGSS
                     CDGQVLVLHDMLGIYEDMKPKFVKRYAEVSKSIFDAVSVYISDVKSSKFPNEENIFHI
                     SPAELEQIRKTLKEKK"
     gene            complement(5569..>6288)
                     /locus_tag="VHF44_04500"
     CDS             complement(5569..>6288)
                     /locus_tag="VHF44_04500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopantothenate/pantothenate synthetase"
                     /protein_id="HEX2124847.1"
                     /translation="LYIRELLVNGFKNGIVVEEGLIAHGRGETFDYLLGEDTTETART
                     AIKAACSLLLLAVHPVISVNGNVAALCSKEVVELSNLINADIEVNLFYWSEKREIAIE
                     KELKKMGAKTVLGTRSVHSARIPELRSERGIVDYDGIYKADTVLVPLEDGDRTEALVK
                     MHKKVIAIDLNPLSRTSRAATITVVDNVIRALPAMAIEAKQLKQQNGEFLKRIVNEFD
                     NSKNLSQSLEIIRCGVHARHR"
BASE COUNT         1874 a         1261 c         1083 g         2070 t
ORIGIN      
        1 atacaatcct taccaaagta aagttagata aacgctctgc tttggattta gcaaaatctg
       61 taaatgtgct ttgatactgt tttaatacta aaatttcaaa tcaaagaagt atagaaaaaa
      121 ttatgggtta cgtattatta cttccgaccg tttttatctc attgtcttca gatttagcgt
      181 ccaccggtcg ctctatcttg gcattttgat cattttcttg ctgatgttgt gacaatgttg
      241 gcgatctgaa gctttcaata aacttaatat ccttcaaaga aggtacaaat ttgaaaacat
      301 cattagctac agcgcgtttt ataatttgca atccttctgc tagtagagtt tcttcaggaa
      361 gttctatttc taaagtggat cctttaagat taatttttat tttttcgtca tctataggta
      421 gccttcgctt tattaatgat cttattttat catcattact ttcgactttt ttcactacgt
      481 ctacatcata tgtcagagtt cggcctgcaa atctatgatt aaaatcaatt tggactcttc
      541 cggatcccac gtacctgaca attccagtac gatgatctat ttcaattaca tcgcctaccc
      601 ttacttcgtc agccttctcg cctagctttc gctgtgcaac cattcttact ttgttcgggt
      661 ccctttcacc aaagccttta tccggagtaa tctcaacatt aattttatcg ccaatatttg
      721 cagctgcaag agcctcatcc agacccttta aaacccagcc ttcgcctata gatataagct
      781 ttggctcata tttgtgagtt ggatcaaaga gctcaaattt ctttgcctcc tcttcacgag
      841 ttgtttcgaa aatttcgtta ctatctttaa ctttagcggt ataatctacc aatatgagtg
      901 aacctctttc caaagtcata aaattcgcta ttaatttacc ttatattaag attgacaggc
      961 tacaaagtag ggtaaaagat ctcagaataa accaaattac tctaaatctt tgaccttttt
     1021 tagagcaata gaagtagcct caggattaac attaaagcct aatatattca tcgcggacga
     1081 aattgatgat aatgttctca ttacgtggta tttgctgact tctcccatgc ttcctattct
     1141 gaatacttta ccctttaact cgccaaatcc ccctgctata agaatcttga agtcatctga
     1201 taagagtgat ctgaatttct tatcatccat gccgggaaga taattaagag agattacgac
     1261 gctacttctg gcattgggct ttgcaaatgg tgttaatccc atcgaactta atcctgaata
     1321 gaatgcatct gcacagatcc tgtgacgttt aattctttta tctagccctt cttccaggat
     1381 taaattgaga gcctctctga aagcgtagaa gagaggaagc gccggtgtga aaggtgtttc
     1441 ataatgttct tcatagtact tgaaatagcg cttcaggtta agatattgag ttggaggagg
     1501 gttagactgc atgtattgtt tagttctggg actaattgat attggcgata cgcctggggg
     1561 agcagcaatc gctttctgtg aggcagttac acagatatcg acgttccatt tatcaacagg
     1621 caattcgtca ccgcccaaaa tggaaacagc atcgactatg aagaaagtgc cctttctggc
     1681 tgacaactcc cctatcttgt ccatgtatcg aagtgttgtc cctgtggatg tttcattgta
     1741 tactgtgtat atcgctttga tgtccttatt tttatcaaaa acttcttcta tcttttcgta
     1801 cggaggattc tcaccaaaag gagcagtgac tctgattgcc tgacctcccc aactatcaat
     1861 taaatcggca aggcgagttc caaattcgcc atttactggg ataattatct tgtcaccttt
     1921 tctaattaga ttaacaacag ctgcttctac ggctcccgta cctgaagcag ttaacaatat
     1981 gatgtcatta gtagtaagaa aaactttctg tgtcttttct acaatatctc tatataatat
     2041 gcgaaaatca tcacttctgt gattaattat tggcgcaagc attgcattca ttactctatt
     2101 tggcacattt gtagaaccgg gaagcataac caaatattcc atgctgtctc attagaccag
     2161 catacgtact gatatttaaa ttacgttgcg ctaggtaaaa atgataaggc tgattgagaa
     2221 atcctggatc tgatgataaa actacgccgc ctcaacttgt tagagcatgc taacaaattt
     2281 ggatgtaatg tcattgctgc ctttcaacca gaaaatattt tttatctcac tggtttctgg
     2341 ggagagggaa ttgcaatatg tacagaaagt gtaactaccc tccttacacc taagttggaa
     2401 gtaggaagag cccttcaaga atcgaaagaa tgtgatgttg tttctacaga aagaggagat
     2461 gatttgattt atagtcttat ttctaacgtc gataaaaaaa tgacatgtac tgactgtagt
     2521 gatcatgcta tcatcagaaa aattcaagat gaaattggtg caaaatcact catagttaat
     2581 gttgaaccgt tcttccttac ccgaataatc aaggatgaag aggaaattga aatgattgaa
     2641 atggcagcta gaattttaga cacactatat aggatttgca ctgaggaaat caaggtaggg
     2701 ttatcagaga gagaattgca ggcaaggttg ctcttcgaag cgatgaaatt gggaacatat
     2761 cctacctctt acaaagcgtc actaaatccc tttatcattg ctggaggacc aaacgcggct
     2821 ctgccacatg cacaagtttc agatcgcaaa tttataaaag gtgacgtgat tattgtagac
     2881 cttactttga gatataatgg atatatcgct gatgcaacaa gaacctttgc tttgggtaca
     2941 gcaacatcag aaatcagaaa aatatatgat atagtcaaga aatctcaaca ggcagggttg
     3001 gatgcattgc atcccaacat tatgtgtggc caagttgatg ccatttgccg aagaataatc
     3061 tcggaagaag gatattcaga atactttatc cattctacag ggcacggaat tggtctagat
     3121 gttcatgaac ctccgtggct tcgaataaga aacgaggaga gattgaaagt taatatggca
     3181 ctgacaatag aaccaggaat atatttacaa ggcaaatttg gaataagaat agaagatagc
     3241 gttatagttg gtagcgagcc tgatggaaga gcaagaatac taaacggatt cacaaaagat
     3301 ctacttgagt tagactagaa atcatactat aaaaatagta aaacatatga caggatatta
     3361 tagaaaatcg ccgtggatta acagatctag gatgatatgt attcttatcg tagcaatgtt
     3421 acaatttatt atgagtaatc aaattctcaa taacattaag taattttcta gctatgctat
     3481 ttttattttg aggaggtaga tgtagaatat ttctatgctt atctataagg aacacctcgt
     3541 tattttcaga gccaatcaca gaattttttc ttccaacatc atttgcaact attaaatcgc
     3601 ctttacattc cttcagtttt cgataggctc ctttaattat attggagtct gagacattat
     3661 attctgcttt aaatcccact agaaaagttt gtttgcttat gtgcttaaca tggtttatga
     3721 tcttctgagt tggtgaaaga ggcaaaagta attttcctct actagtccca atttttttta
     3781 tggctttgcg ttcaggagta taatcagcca ccgcggccga caaaatcgca acatcatatc
     3841 tttttgaaga aagttcagac attaccacat catacatttc tttacttgta ttcaccctaa
     3901 ggatatttag attaggcaag gatttagcac tatatgttcc atgaccgtat acaagtgtaa
     3961 tatttgcacc cattctaata gcttcttcag caattatgtt tcccatttta ccagagctaa
     4021 ggttagtgat gactcgaatt ggatctatat attcaatagt actgcctgct gtaaccaaaa
     4081 tatttttttc aaaaaagaaa gatccagttg agtcagtaaa tttggttatt actgattgta
     4141 acatttgttc tggagagaca acttttgcct ttccctcggt aattataggt tgcagaaaat
     4201 ccactccttg atctttaact ctctggatat tttcctgaat aagacgattg tcatacattg
     4261 actcatgcat agccggggca ataattatag gaattcgaga cccaagagca acacttagaa
     4321 cagaagtaac aggtgtgtca ttgattccat tcgcaacttt tcctattgta tttgcagtgc
     4381 aaggatatac aacaatcaaa tcagacatat tatagtctgc aagggcaatg tgttcaaggc
     4441 ttcctgttat cttggtaaca acattattgc ctgtggccca ttccagcatt tctggcgtaa
     4501 gcaacgttga tgcgacagcc tctgacatca caggatacac ctcagcgcca tgtcgtataa
     4561 gctgacgggc taaatcaata gatctatagg ccgctacact acctgtaata cataagacga
     4621 ttttctttcc ttctatctcg cgtccatcta ttcctgtaat atctttagag gagtaaaatt
     4681 ctgttcttct ttttgcatcc attatattat tttttctcct ttaacgtctt tcttatttgc
     4741 tcaagttcag ccggagatat atgaaagatg ttttcttcat ttggaaactt actcgacttc
     4801 acgtcactaa tatatactga aacagcgtcg aaaatagact tagatacctc tgcatatcgt
     4861 ttcacaaatt tgggtttcat atcttcatag atcccaagca tatcatgcag tacaagtact
     4921 tggccgtcac agctcgaacc cgagcctata ccaatagtgg gtatacagat attcttagag
     4981 atgatgtctg ctacttcgct tgtcaccatc tctaatacaa tactaaatac tcctgcttct
     5041 tcaagcgctt tggcatcttc aattaatttt aatcctgaaa attttgtctt tccctgcaac
     5101 ttatagcctt cccataaagt acttgtctga ggcttcagac caatatgtcc catgacagga
     5161 attcctgttt taacaatagc tttgactgta tcgataattt caataccacc ttcaagtttt
     5221 acagcatgac atccaacctt gataaatcta atagcatttg ctatagcttc acttgtagaa
     5281 acctgatacg atccaaaggg catatcggca attatcattg ctctatttac acctcgtgag
     5341 acaccactgc aaaatgtcag catttcttcc atgtttattt gatttgtagt aggataacca
     5401 agcatcacca tacctgcgct atctccaact aacaaaacgt cgactcctgc cctatcacaa
     5461 attgaagcag tagaatagtc ataagcagtt aaaacagaga ttttttctaa tttttgtttc
     5521 atcattataa tatcctttac actaaccctt tttctattaa aaatgctgtt atctgtgtct
     5581 tgcatgcaca ccacatcgga taatttcaag tgattgtgag agatttttgc tgttgtcaaa
     5641 ttcatttaca atccttttga gaaattcgcc gttttgctgt tttagctgtt ttgcttctat
     5701 agccatagcg ggcaaggccc gaataacgtt atctacgact gtaattgttg cagctcttga
     5761 tgttcttgat aagggattaa gatctatcgc tattactttt ttatgcattt taacaagagc
     5821 ctctgttcga tcaccatctt ctagcggaac gagtacagta tcagctttat agatgccatc
     5881 ataatctact attccacgct cgcttcgtaa ctcaggaatt ctagctgaat gtacgctcct
     5941 ggttcctagg actgtctttg cacccatttt ttttagttct ttttcaattg ctatctctcg
     6001 tttttcgctc caataaaata gattgacttc tatatccgca ttaattaaat tacttaattc
     6061 aacaacttcc tttgaacata gtgcagcaac attaccgtta actgaaatca caggatgaac
     6121 ggcaagtaaa agcaaagaac atgcagcctt tatagctgta cgcgcagttt ctgttgtgtc
     6181 ttcgcccaac aaataatcaa aagtctctcc tcttccatgc gcgattaaac cctcttctac
     6241 tacgatacca tttttaaaac catttacaag caattccctt atataaag
//
LOCUS       DATABJ010000276         1994 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2123788, whole genome shotgun sequence.
ACCESSION   DATABJ010000276 DATABJ010000000
VERSION     DATABJ010000276.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1994)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1994)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1994
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2123788"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(125..586)
                     /gene="hsp14"
                     /locus_tag="VHF44_04505"
     CDS             complement(125..586)
                     /gene="hsp14"
                     /locus_tag="VHF44_04505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_process: GO:0042026 - protein refolding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="archaeal heat shock protein Hsp14"
                     /protein_id="HEX2124848.1"
                     /translation="MKHLEYCQIHVYQKKGFISIQRKWSMGLGQYMAKEVMRELGNRS
                     KEFYEFIMPAIDIVEDGNDLLIIIDLPGFAKKDIKLRIVEDILSINAKREPEENLGTV
                     YYRQRPSVIEKKVTLPISVSDDEKVVGTANYVDGVVTLRVPIPMSGNIPVI"
     gene            667..1989
                     /gene="truD"
                     /locus_tag="VHF44_04510"
     CDS             667..1989
                     /gene="truD"
                     /locus_tag="VHF44_04510"
                     /EC_number="5.4.99.27"
                     /inference="COORDINATES: protein motif:HMM:NF013322.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003723 - RNA binding [Evidence IEA];
                     GO_function: GO:0009982 - pseudouridine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0001522 - pseudouridine synthesis [Evidence
                     IEA];
                     GO_process: GO:0009451 - RNA modification [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(13) synthase TruD"
                     /protein_id="HEX2124849.1"
                     /translation="MNTQVPKIDKLAGIECYSTDYKGICGSIKHSNEQFKVSEIIDTS
                     FLANISSVQDNHHKYPLYVLEKKNLDSNHAIFEIRRDLGIKLKVIGLKDAKAVTKQYA
                     SSEQTKNILKEAKTAHTHLTLKGFTKTPIGKSSLFGNTFTITIHNPALSDISLFLPEI
                     RKIANFYGLQRFGSERMVTHLVGKEIVKRNFQKAVELLLSYTTEYDSAMSIELRKKSR
                     DPKKYSQIIRELPRRMDIEYKVMSALENGKGPITALRSIPINIRRLFVQAYQAYIFNK
                     SLSIAVINGENVLESKEGDLCFEIEDSSVFGRIRKYNSSTDLNSHTVPAIRLIGYTFQ
                     PGKGRFDTITEKIMNIEGVTPREFYIKEMQELSAQGGFRQAPLWCRDFEFKGSLTVSF
                     KLPKGSYATTLLRELMKPKDPFGSLKDTVSDPLNSKSLHHRGACVNPP"
BASE COUNT          687 a          352 c          330 g          625 t
ORIGIN      
        1 ggaacatcat tttaactatc aatattatat taatactatg ctattttagg gtatgtaaac
       61 aaatgtataa tgaacaacaa taccgctaat ttcctactat ttcttttggt tgacgatttt
      121 tccgttatat tactggaata ttacctgaca ttggaattgg cactctcagt gtaactacgc
      181 catctacata gttcgctgta ccaactacct tttcatcatc actcactgaa ataggtaatg
      241 ttactttctt ttctatcaca gatggccttt gtctataata tactgtgcct aagttctctt
      301 caggttccct ttttgcatta atcgataaga tatcttctac tattctaagt tttatatctt
      361 tcttggcaaa acctggcaga tcaattataa tcaaaagatc attgccatct tcgactatat
      421 ctatggctgg cattataaat tcatagaatt ccttggatcg gttacctaat tctctcataa
      481 cctctttagc catatattgt cctaaaccca tactccattt tcgttgaatc gatataaatc
      541 ctttcttctg atatacatga atctgacaat actctaaatg cttcactata catcgatgat
      601 atacatgacg gtagaggaat tcgattactc tttattgggt tcaacaattc cgagatgtta
      661 aaattaatga atacccaagt tccaaaaata gacaagcttg ctggcataga atgctacagt
      721 actgactata agggaatctg tggttctata aagcatagta acgagcagtt taaagtttca
      781 gagataatag atacatcttt tctcgccaac atatcatctg tccaagataa tcaccacaag
      841 tatccgcttt acgttttgga gaaaaaaaat cttgattcaa accatgcaat atttgaaatt
      901 agaagggatc ttggcattaa gctgaaagtt attggtctaa aagatgcaaa agcagtaaca
      961 aaacagtatg ctagttcaga gcaaacaaaa aatatattaa aagaagcaaa aacggcccac
     1021 acacatttaa cattgaaagg ctttaccaaa actccaatag gaaaatcttc tttatttgga
     1081 aatacattta caattaccat ccataatccc gctctttcag acatctcttt attcttacca
     1141 gagatcagaa aaatagccaa tttttatgga ttgcaaagat ttggaagtga aagaatggtg
     1201 actcatttgg ttggaaaaga aattgtgaaa cgcaattttc aaaaagcggt agaactattg
     1261 ttgtcttata caaccgaata tgattctgca atgagcatcg agttacggaa gaaaagccgt
     1321 gatccaaaga aatattctca aattattaga gaacttccta gacgaatgga tatagaatac
     1381 aaagtaatgt cggcattaga aaatggcaag gggccgataa cagcattgcg atctattcca
     1441 atcaatatcc gcagattatt tgttcaggct tatcaggcat atatttttaa taaatctcta
     1501 agtatcgcag taataaatgg tgaaaatgta cttgagagta aggaaggcga tctttgtttt
     1561 gaaatagagg attcatcagt ttttggtaga ataagaaaat ataattctag tacggattta
     1621 aattcacata cagttcctgc aattcgtcta attggatata catttcagcc aggtaaagga
     1681 agatttgaca caattacaga gaaaataatg aatattgaag gtgtaacacc aagagaattt
     1741 tatataaaag agatgcaaga attaagtgct caaggaggat ttaggcaagc gcctctgtgg
     1801 tgtagagact ttgaatttaa aggatcactt accgtatctt tcaaacttcc aaaaggatcc
     1861 tatgctacga ctctattgcg agaactaatg aagcccaagg atccttttgg aagtttaaaa
     1921 gataccgtaa gtgatccttt aaattcaaag tctctacacc atagaggcgc ttgcgtaaat
     1981 cctccttgag cact
//
LOCUS       DATABJ010000277         3164 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_169525, whole genome shotgun sequence.
ACCESSION   DATABJ010000277 DATABJ010000000
VERSION     DATABJ010000277.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3164)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3164)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3164
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_169525"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(99..776)
                     /locus_tag="VHF44_04515"
     CDS             complement(99..776)
                     /locus_tag="VHF44_04515"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124850.1"
                     /translation="MPITTKLENIADGFSEPKKKLLYYLKVMQQAGLEELANVMKVSR
                     MAVHKHLGLLQQRGLVEAVETRGHVGRPRMVYQLTSQSKTVFPKSYSAIATHALDFIE
                     RNMGKEAVEKVLRERQSELFDQYYKRLNGLDFDKQVKELARIRDEEGYIAESKKDSKS
                     GGGKHVLLEYNCPIIHIAEKHWEACSTETELFEKLLGADIETTHRAAKGDLVCKFIIK
                     ERKEGFL"
     gene            complement(1840..2187)
                     /locus_tag="VHF44_04520"
     CDS             complement(1840..2187)
                     /locus_tag="VHF44_04520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124851.1"
                     /translation="MSSNYNNNTQFFLNVMLWLGISLAISLTISLLLPFPISLVTIVG
                     VFILLNFYMRRRMMQRMGMRGGEGVRGAFSSMSSSPMSEDNSLKYHCMSCGTQHKDIS
                     CPNCGSKMKKVGY"
     gene            complement(2548..2724)
                     /locus_tag="VHF44_04525"
     CDS             complement(2548..2724)
                     /locus_tag="VHF44_04525"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124852.1"
                     /translation="MNEKEVNNMGYGCCGTGFQKERSFLTKEERIALLKEYKNDLEKE
                     AEGVVERIKELEAK"
     gene            2830..3096
                     /locus_tag="VHF44_04530"
     CDS             2830..3096
                     /locus_tag="VHF44_04530"
                     /inference="COORDINATES: protein motif:HMM:NF015513.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003677 - DNA binding [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEX2124853.1"
                     /translation="MLGFLILFLLSKQPMHGQELADEIARRKGEKPSPGTIYPALKNL
                     REMGFIRAEEKEGKIIVYSLTERGKNALTIAKRRFVKTFLGVFP"
BASE COUNT         1046 a          583 c          465 g         1070 t
ORIGIN      
        1 atttataaat aaaaaggttt acaaattata caaaccatca agacagatgc ctatctatat
       61 gagaaaaata tctttcttac ctctatatta attcggcttc ataggaagcc ttcttttctt
      121 tctttgatta taaatttaca aaccaagtct cctttggcag ctctatgtgt tgtttctatg
      181 tcagctccaa gaagtttttc aaataattca gtttcagtag aacatgcttc ccaatgtttt
      241 tcagctatat gtattatcgg acagttatat tccaaaagga catgttttcc accaccactc
      301 tttgagtcct tctttgattc agcaatatat ccttcctcat ctctaatcct agctaactcc
      361 ttgacttgtt tatcaaaatc caaaccatta agacgcttat aatattgatc gaaaagttcg
      421 ctctgacgtt cacgcagaac cttttcgacc gcttctttac ccatatttct ttcaataaaa
      481 tcaagagcat gtgttgcaat tgcactgtat gattttggga aaacagtttt gctttgactt
      541 gttagttgat acaccattct tggcctgcca acatgtcccc ttgtttcaac agcttctact
      601 agacccctct gttgtagaag accaagatgt ttgtgaactg ccattcttga caccttcata
      661 acattcgcca attcctcaag tcctgcttgc tgcataactt taagataata aagcagcttc
      721 ttttttggtt cactaaatcc atcagcaata ttttctaatt tagttgtaat aggcatctaa
      781 tacacagaaa catatagtat tactcattca taaatcatga ggtttataaa tcaatatgtt
      841 taactttgta ctgaaagttt tcatctcttg cataatacaa ttcagctatt aggaattcat
      901 ataattcgta aatctacaag ttataatata gatcaataaa acatctatga gtaggtatgt
      961 agaaaccatt aagaaagaga tcttaagagg cactatgttg ttgctgaagt acatagattt
     1021 ggaggtatcg aaatttgtta aagcaaaaga gaaatgatac ttataaatgg taatcgttta
     1081 gcctacttac caggtccaat aagcatgaga aatgagcttg ttaaattcag acgtgtacta
     1141 ctcatcatgt tcttccacaa tcaggatggg ttagctattg gcttagagat gaagacaata
     1201 tagctattgc agtaattgaa ttattccagc tgcaatacca gcatcgcaat cccaaatctg
     1261 aagaagaata tagtcagtca ataatagaaa gtaatcataa ctaatgatat tttttgaaaa
     1321 tctatctcta attcattaat caataaaaag aagattatct tagtttctgt aagatattgt
     1381 tatcttgtac tttgaacatt actctgatag atccttcaaa cccatacatt tccattttat
     1441 tgaagatagt caaagtcaat tcagcataag attgagcata agaatagatt tacgtttaca
     1501 attatctttg ataagcagaa tcgctatatt tcattatagg attttacttt caatatagca
     1561 gcaaaagcta tatcggctat catagagtct cttcactctt ttcgaatcca aaataacacg
     1621 aatagcattg tttttttcca taaattattc cactcttgcc acatttggca catacattat
     1681 cataatctat agttgagtct agagattttg ctttttgtaa gcatttacca caaattggtg
     1741 cttctaaatt ataacttgat agaaaaccag agccgcattg ggtgcacctt aggctataca
     1801 tatttccttt tggtttccaa cgtctgaata tattgatcat caatatccca cctttttcat
     1861 cttagaacca caattaggac atgaaatatc tttgtgctgt gttccacagc tcatacaatg
     1921 atatttcaat gaattgtctt ctgacattgg ggaagaagac attgagctaa aagctcctct
     1981 tactccttct cctcctctca ttcccattct ttgcatcatt cttcttctca tatagaaatt
     2041 aagcaaaatg aatactccta ctatagtaac taatgatatc ggaaatggta atagtagaga
     2101 gatcgtaaga ctgatagcta aggatatacc taaccatagc attacattaa ggaaaaattg
     2161 agtgttgtta ttgtaatttg aactcatatt tcttactacc actattttct acatttatct
     2221 aattaaattt agtagtaatt attaacttac ttggtaattg ttttcttatt gtgttacaac
     2281 tatccactac cactatgctg ccactttgaa ttttcgttat ctgacgggaa aataaagacg
     2341 ccgcatcaat aaaatcgata tagtgaagag atctaggatg acaaaactaa gatttgggcg
     2401 tacactccaa tatatagccg ctgcctgaaa taactgacct aaggaaattg cacaagatta
     2461 cagactcaaa tattcatact ctgataatct tgtcatcaaa gtataatatg tgaggattaa
     2521 attaaaaaat aaaaaataag tatcaagtta ttttgcttca agttccttga tcctttcgac
     2581 aacaccttcc gcttccttct ccagatcatt cttgtattct tttagcaacg caatccgttc
     2641 ttccttagta agaaaactcc tttctttttg aaagcctgtt ccacagcaac catatcccat
     2701 attattcacc tccttttcat tcatatcgta tatacgatat ataagtaatg atgtatttat
     2761 atatatcgga cgtccaatat tatataaatg agaaggtttg gcaataacta ttgttgtgat
     2821 atgagaggca tgttaggatt tctaattctt tttttacttt caaaacaacc gatgcacgga
     2881 caggaacttg cggatgagat tgcaagaaga aaaggagaaa agcccagtcc aggaaccata
     2941 tatccagcgt taaagaacct tcgagaaatg ggatttatta gggcagaaga aaaggaaggt
     3001 aaaatcatag tctatagtct tacagagcga gggaaaaatg cacttacaat tgccaaacga
     3061 agatttgtaa aaacttttct tggagtattc ccttaaaacg gcattcaatg gatcttaaaa
     3121 ccacgaaata tacaatcaga aactattcag gatttttatt aaat
//
LOCUS       DATABJ010000278         1927 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_173308, whole genome shotgun sequence.
ACCESSION   DATABJ010000278 DATABJ010000000
VERSION     DATABJ010000278.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1927)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1927)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1927
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173308"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            7..1212
                     /locus_tag="VHF44_04535"
     CDS             7..1212
                     /locus_tag="VHF44_04535"
                     /inference="COORDINATES: protein motif:HMM:NF012488.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class V-fold PLP-dependent
                     enzyme"
                     /protein_id="HEX2124854.1"
                     /translation="MDAGYNGFHGDNGIELDLIRRDFPLVRKKVYMNNGAIAPIPIST
                     IKSITDFLLKCSEDGPDSKMIYDYIVSLMKELRTRITHMINCDPNEIVFTQSTTEGLN
                     YVCNGLDWKRTDSIIVRGGRHEHYANYLPWLQLSKRKGVKIHELDIDENGYFDFTNLE
                     KLAKKKNTKLITLSHALYNSGAIMPVEETGKIARENNILYCIDAAQTVGSIEVDVKKI
                     GCDFMAFPGFKWLCGPVGIGIFYCSKNAGELLIPQSIGGESAILSDQKVIAYVESPQR
                     FQTGFRNYPGVAGLESSLRYILRIGIANIHKKNIKIANILRSELIKIKGIKIYGPEDE
                     KERTSIIPFSSSNLDAKTLVDRLEQNEIIFAERDIGGGKKVVRASPHFFNSEEDVVRA
                     VSYIKNILK"
     gene            complement(1219..1488)
                     /locus_tag="VHF44_04540"
     CDS             complement(1219..1488)
                     /locus_tag="VHF44_04540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lrp/AsnC ligand binding domain-containing
                     protein"
                     /protein_id="HEX2124855.1"
                     /translation="MPTAYVLINCDLGSEEEILKELKKLPEVIEVSGVYGVYDIILKI
                     TSDTMDKLRETITWHVRRIDKVRSTLTMIVIEGQGDKGKKQQQQQ"
     gene            complement(1734..>1927)
                     /locus_tag="VHF44_04545"
     CDS             complement(1734..>1927)
                     /locus_tag="VHF44_04545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124856.1"
                     /translation="VTDKEVKQQIKPILEAILRAQPQTVIKSYSQTVIQITMPKRRYE
                     NIGSPRVGERLLIDIKKAN"
BASE COUNT          625 a          298 c          352 g          652 t
ORIGIN      
        1 gtttagatgg atgcaggata taatggattt catggcgata atggtattga gttagatctg
       61 attcgaagag actttccact tgtaagaaag aaagtttaca tgaataatgg agccattgct
      121 cctattccaa tctctacaat caaatcaatt actgattttc ttttaaaatg ttctgaggat
      181 gggcctgatt ctaaaatgat atacgactat attgtttcgt taatgaaaga actacgtact
      241 agaattactc atatgataaa ttgtgatcct aacgaaattg tatttactca aagcaccaca
      301 gaaggcctta actacgtctg caatggtctc gactggaaaa gaactgattc tattatcgtt
      361 agaggtggac gtcacgaaca ttatgctaat tacctgccat ggctgcaatt atcaaaaaga
      421 aaaggtgtaa aaatacatga attggatatc gatgaaaatg gatattttga ttttacaaat
      481 ctggagaagt tggcaaagaa gaaaaatacg aaactaatta cattgagcca tgcactatat
      541 aattctggtg caataatgcc ggttgaggag actggaaaaa ttgcacgtga aaataatatc
      601 ttatattgca tcgatgctgc ccaaacagtg ggctcaattg aagttgatgt aaagaaaatt
      661 ggttgcgact ttatggcatt tccgggattt aaatggcttt gtggacctgt tggtatagga
      721 atattttatt gtagtaaaaa tgctggtgaa cttctaattc ctcaatctat tggtggagaa
      781 tcagcaatat tatcagatca aaaagttatt gcctacgttg aatctcccca aagatttcag
      841 actggatttc gcaattatcc tggtgttgca ggattggaat cttcactacg atatatttta
      901 cgtataggta tagcaaatat tcataagaag aatataaaaa tcgcaaatat attaagaagt
      961 gaacttataa agatcaaggg tattaaaatt tatggaccag aagatgaaaa ggagagaaca
     1021 tctataattc ccttttcctc ttctaattta gatgctaaaa ctctcgtaga cagactagaa
     1081 caaaatgaaa ttatatttgc tgaaagggat attggaggtg gaaaaaaggt agttagagcg
     1141 tcaccacact tttttaatag cgaggaagat gttgtaaggg cagtgagtta tattaaaaat
     1201 attttgaaat gattattatt attgctgttg ttgttgcttc ttccctttat ctccttggcc
     1261 ttcgatcaca atcatggtaa gagtcgatct aactttatca attcttctta catgccaagt
     1321 gatagtttcc ctcagtttat ccattgtatc tgatgtaatc ttaagaatga tatcataaac
     1381 accgtacact ccacttactt caatgacttc aggtaatttt ttcagttctt ttaaaatctc
     1441 ttcctcagaa ccaaggtcac agtttattag gacatatgct gtaggcatgg taaacagtat
     1501 atgttctttg cgagtattaa actatttttt cgtttataga tgattgaaca ataacaagaa
     1561 aatgattggt ttagatttct aatatgttct cttaaaccag tgatgcctct atttgctgtt
     1621 gttcactgta cttagaaaca accaaataat gattgtaatg cttctgaatt attgtcaaac
     1681 tcttcatttg atacaatttt tgcatcgtta tcgttagcag tattttacaa tggttaattt
     1741 gcttttttaa tatctattaa taagcgctca ccgacacgcg gagaccctat attctcataa
     1801 cgcctcttcg gcattgtaat ttgaataacc gtctgagagt atgatttgat aactgtttga
     1861 ggttgagctc tgagaatagc ttctaaaatt ggtttaatct gttgtttaac ttctttatca
     1921 gtaaccg
//
LOCUS       DATABJ010000279         2967 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_173479, whole genome shotgun sequence.
ACCESSION   DATABJ010000279 DATABJ010000000
VERSION     DATABJ010000279.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2967)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2967)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2967
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_173479"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..506)
                     /locus_tag="VHF44_04550"
     CDS             complement(<1..506)
                     /locus_tag="VHF44_04550"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124857.1"
                     /translation="MAILISSGFFLSYTSTSLIRESYGHLEHFPHYNGGGDGVGQYYA
                     YIGLNPEYARPHEITQITFSIQDFNGNDVHNVKTMVEIYETLNGQRVAAYPWTLHNIG
                     DFNINYVFPRIGNYQIVLSVANNNDNSIINYDEVDPPRSILGNTQNCNCDRAVFNVSI
                     SNNFGSIYT"
     gene            878..1828
                     /locus_tag="VHF44_04555"
     CDS             878..1828
                     /locus_tag="VHF44_04555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEX2124858.1"
                     /translation="MWKVMMPRKIAFGENAAKEFEYPTNSLIITTTTPDVYNRWLEYM
                     QIRNYEVYDKVTPDPAIETVETIRKEYEGKNISAYIGLGGGSSMDVCKYLSKVTGIPK
                     ILIPTTFGTGAEMTTYAVISFEHKKKLLQDEKFLADAAIVDPYFLPGTPFNIMRNSAC
                     DAAAQASEGYDSKLANPFTKLFCKEAFDILEDALINDKPHLLPYGAMLSGIGFGNSST
                     TLGHALSYVFSNEGVAHGYSLSSCTTVAHKFNKSVYYERFKRICQKLKFEPLKLKQPL
                     DQAADVIMPDRGHLDNNPVPVTRDDIIKCLNEIVNSNPLA"
     gene            2162..2752
                     /locus_tag="VHF44_04560"
     CDS             2162..2752
                     /locus_tag="VHF44_04560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEX2124859.1"
                     /translation="MTIISKSIEINAPVSEVFTYFARPEHMADQFPESMNLNVIPIEV
                     KNGFGVGTIFRINGDFDGKKLEWDCETIDYIPHRKIVAQMIKGPFKHWQITVQFEEVT
                     EKTTKTSINVDYEMPMGPLGELMNKVKIKKIAERGMENGLYRVKALLEGTGSIPVYIT
                     LEAYRKILKEKERYNCSVSDAIVRLIKEQPTAKVSR"
     gene            2820..2912
                     /locus_tag="VHF44_04565"
     tRNA            join(2820..2862,2882..2912)
                     /locus_tag="VHF44_04565"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.12"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2854..2856,aa:Lys,seq:ctt)
BASE COUNT          990 a          484 c          551 g          942 t
ORIGIN      
        1 gtatagatac tgccaaagtt attagatatt gacacattga aaaccgctct atcgcaattg
       61 caattctgag tattacccaa aatgcttctt ggaggatcta cttcatcgta attgatgata
      121 gaattgtcgt tattattagc aacactaaga actatttgat aattacctat ccttggaaat
      181 acatagttaa tgttgaaatc gccaatgtta tgcaatgtcc atggatatgc tgcgactcgt
      241 tgtccattta gagtttcata aatctcgacc atagttttca cattgtgaac atcattaccg
      301 ttgaaatctt gtatactaaa tgtaatttgg gttatttcat gtggacgagc gtattctgga
      361 ttcaacccta tataagcata gtattgtcct actccgtcgc ctccaccatt ataatgagga
      421 aaatgttcaa gatgaccata tgattcacgt attaatgagg ttgaagtata ggataaaaaa
      481 aacccagatg aaattagaat agccatagaa atgcacagct tgaatgatat tttatcaagc
      541 atcaaattat aagatcacaa caggctcata taactcgtac ttatagaatt gttaaaaaaa
      601 cactatttta tcaccaagtt gttagacttg tatgttctat atactctata gcggagaaat
      661 acttgtcgtt actgattgta tctattaacg ggcctcataa aatatctgtg cttttgtcag
      721 cagtaatact tttcagttaa tggtaaagct atatagtgtg cctacgacga acctaataag
      781 caaatacttt gaattcataa gcaataaaac aaataaaatt ttttgattct atactgttca
      841 gtaaaatata atacggtaaa ggctacctcc ttttcttatg tggaaggtaa tgatgccaag
      901 aaaaatagcc ttcggcgaaa atgctgctaa ggaatttgaa tatccaacga attctttgat
      961 tataacgaca acgactcctg atgtttataa caggtggtta gagtatatgc aaataagaaa
     1021 ttacgaagtt tatgacaagg tcactcctga ccctgcaatt gaaactgttg agacaataag
     1081 aaaggagtat gaaggaaaga atatttcagc atatattggt cttggtggag gaagttctat
     1141 ggatgtatgt aagtatctta gcaaagtaac tggtattccg aagattttga ttccaacaac
     1201 tttcggtacg ggagctgaaa tgacaacata tgccgttatc agttttgaac acaagaaaaa
     1261 actattacaa gatgagaaat ttctcgcaga cgctgcaatt gtggatccat actttttgcc
     1321 tgggactcct tttaatatta tgagaaattc tgcatgcgat gcagcagctc aagcttcaga
     1381 aggctatgat agtaaacttg ctaatccatt tacaaaactc ttctgcaaag aagctttcga
     1441 tattctggaa gatgcactca taaatgataa accacatctg ttgccatatg gggcaatgct
     1501 atctggaatc ggatttggaa attcatcaac aacattaggt catgcattat catatgtctt
     1561 ttcaaatgaa ggcgtcgcac atggatattc cctgtcatct tgtaccacgg ttgcacacaa
     1621 attcaacaag tcagtatact atgaacgctt taaaagaatt tgtcagaaat tgaaatttga
     1681 gccactaaaa ctgaaacagc cacttgatca agcagctgat gtaatcatgc cagatagagg
     1741 tcatttggac aataatcctg ttcctgtcac gagagatgat ataataaaat gtctgaacga
     1801 aattgtaaat agtaatccat tggcctgagt ttgcaacttt ttcttatttg agaatatatt
     1861 cgcttacttt tgttttgaaa gttatagtca atatgctaat atttctctaa tattgcatga
     1921 attatctgtt tctgaatagt ctatagcgat aactccacta ttttatgaaa tacattttct
     1981 tttttagtga agggtaatac agactgtagt tcttgtaata tggaatatac atctctaact
     2041 aattatcgct attagtataa tggtatatat cgtcttaaaa gaatgataaa tacaatgagc
     2101 ttagtaacgc aatcttataa gaaaccttta aatccagttt atcgactttc tttgatagac
     2161 tatgaccatc attagcaaga gtattgaaat taacgctcct gttagcgaag tgtttactta
     2221 ttttgcaagg cctgaacata tggcggatca gtttccagaa agtatgaatt taaatgttat
     2281 tccaatagaa gtaaaaaatg gctttggtgt tggcactatt tttagaatta atggcgattt
     2341 tgatggtaaa aaattagaat gggattgtga aacaattgat tacataccgc atcgaaagat
     2401 tgttgcacag atgattaaag gtccttttaa gcactggcaa ataactgttc aatttgagga
     2461 ggttactgag aaaaccacaa agacaagcat taatgtcgat tatgagatgc cgatgggtcc
     2521 acttggagaa ttgatgaaca aggtaaagat aaagaagata gcagagagag gaatggaaaa
     2581 tggtctatat agggtaaaag cattgttaga gggaacgggc tctattcctg tttatatcac
     2641 attagaggct tatagaaaga ttcttaaaga aaaagaaaga tacaattgct ctgtatctga
     2701 tgccatagtc aggcttatta aagaacaacc gacagcaaaa gtttctcgat agttacgttc
     2761 tttttcattt ttagtctctc gtttcattta aatatcgcct gcttacgctg attttctgcg
     2821 ggttcgtagc tcagccaggt agagcgtctg gctcttaacc agtcagattt ctctgggtta
     2881 taatgtcgtg ggtccgaatc ccaccgaacc cgctaactat acgggttcaa tattcaggtt
     2941 agaagatata gaatagcgta tctaaag
//
LOCUS       DATABJ010000280         1619 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_180139, whole genome shotgun sequence.
ACCESSION   DATABJ010000280 DATABJ010000000
VERSION     DATABJ010000280.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1619)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1619)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1619
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180139"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..>1619
                     /gene="ligD"
                     /locus_tag="VHF44_04570"
     CDS             <1..>1619
                     /gene="ligD"
                     /locus_tag="VHF44_04570"
                     /inference="COORDINATES: protein motif:HMM:TIGR02779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003910 - DNA ligase (ATP) activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006281 - DNA repair [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="non-homologous end-joining DNA ligase"
                     /protein_id="HEX2124860.1"
                     /translation="FTERDTRQQFREGKISFTLNGRKVNGSFVLIRIKQRNKQWLLIK
                     SDNDSFATAQNDLTISSPESVLSGRTNEQLLPAKSPRQNKSGTGGQRLMLLEKKISEN
                     SKNDSQFPLSVKPMLAGHVDMPFDNKDWVFEVKWDGVRAILFQNKAKEIIEIQSRNGK
                     NITHRYPEIIESANSVVKCNESAVLDGEIVVLNKEGIPDFQMHQKRMNVESQRDIEFL
                     STNMPATYFVFDILYIDGSDVQDLKFLDRRKILNSIIANDSKRIRISEYIEDEGKALF
                     KSALEKHLEGIVAKHKQSKYHQASRSSAWLKIKGILTQDCIVVGYTKGEGNRQDYFGS
                     LILAAYDEKEKLRFIGHCGSGFDFDLLKETLNVMEGLRTNNNFCPLVTVPYTNSKPTW
                     IRPELVAEVKFSGWTQDSIMRAPIFLRFRYDKQPVECLINQQPSEIDNQNTPGAVESS
                     PSSRPEDKFSNLDKVYWPGTGGLSKEKQQITKGNLIEYYDRISKYILPHLRNRPLSLK
                     RFPDGIMGKTFYHKNWVNEKPDYVKTIQVFS"
BASE COUNT          567 a          270 c          345 g          437 t
ORIGIN      
        1 ttttacagag cgagatacca gacagcaatt tcgtgagggc aaaatatcct tcacactcaa
       61 cggtaggaag gtaaatggtt catttgtctt aattaggatt aagcagcgta ataaacaatg
      121 gctgctgatt aaatcagata atgactcatt cgcaacagct caaaatgacc tgacaatatc
      181 ttctcccgaa tctgtccttt caggaagaac aaatgaacag ctgctgcctg caaaaagtcc
      241 aaggcaaaat aaatcgggga ccggtgggca gcgattaatg ctgcttgaaa aaaagattag
      301 tgaaaacagc aaaaacgatt ctcagtttcc tctatcagtt aagcctatgc ttgcaggtca
      361 tgtagatatg ccttttgata ataaggactg ggtatttgag gtgaaatggg acggggttag
      421 agcgattctc ttccaaaata aagccaagga aataatagaa atacagtcga ggaatggcaa
      481 aaatataact catcgttatc ctgagataat agagagtgca aattctgttg taaaatgcaa
      541 tgaatcagct gtgttggatg gagagatagt tgttctaaac aaagaaggta ttccagactt
      601 tcagatgcat caaaaaagaa tgaacgtgga gtcgcaaaga gacatcgagt ttctatctac
      661 taatatgcct gctacttatt ttgtctttga tatactttat atcgatggca gtgacgtgca
      721 agatttaaaa tttttagata ggcgaaaaat attaaattct ataattgcaa atgattcaaa
      781 aagaatacgt atttcagagt atattgaaga cgaggggaaa gcactgttca aaagtgctct
      841 tgaaaaacat ctcgagggaa tagttgcaaa acataaacaa agtaagtacc atcaagccag
      901 ccggtcttct gcatggttga aaattaaggg gattttaact caggattgta ttgtcgtagg
      961 atataccaaa ggagaaggca ataggcaaga ttactttggt tcattgattt tagcagcata
     1021 cgatgaaaaa gagaaattgc gctttattgg acattgtggt agtggttttg actttgacct
     1081 gttgaaagaa acattaaacg ttatggaagg cctgagaacg aacaataatt tttgtcctct
     1141 agtcactgta ccatacacaa atagtaaacc tacatggatt aggccggagc ttgtagctga
     1201 agtaaaattt agtggatgga cacaagacag tataatgcgg gcgcctatat ttcttaggtt
     1261 tagatatgat aagcagccgg tcgaatgtct catcaatcag cagccgtctg aaattgataa
     1321 tcagaatact cctggcgcag tagagtcatc accatcgtca aggcctgaag ataaattttc
     1381 gaatcttgac aaagtctatt ggcctggtac aggaggatta tcaaaagaaa aacaacagat
     1441 aacaaaagga aatttaattg aatattatga caggataagt aaatacattc ttccccattt
     1501 gcggaacaga cccctttcac ttaagcgctt tccagatggg atcatgggca agacttttta
     1561 ccacaagaac tgggtaaatg aaaaaccaga ttacgtaaaa accattcagg tattctcag
//
LOCUS       DATABJ010000281         2493 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_180725, whole genome shotgun sequence.
ACCESSION   DATABJ010000281 DATABJ010000000
VERSION     DATABJ010000281.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2493)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2493)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2493
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_180725"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            55..720
                     /locus_tag="VHF44_04575"
     CDS             55..720
                     /locus_tag="VHF44_04575"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124861.1"
                     /translation="MDTSYNNIFSTKGLNSLTYNDPYAKLCFTSMIASQCQKKVIYID
                     LDTMFAAYAKSDLILLLRNTNCINKTINIYLPTEDRFESILKEVIEDMYDSSIVIFDS
                     VNSFYNMYYKKIDINSGKGLSNINHLLSIFLMLLLKHGIYLNVPILATSMIRYKKYTE
                     WVQTPTSRRLLHEKSVVKLNVVMINEDDLSLEIISHPTRTSEKIIFQNLGVKFGSSIE
                     NNA"
     gene            complement(1079..>2493)
                     /locus_tag="VHF44_04580"
     CDS             complement(1079..>2493)
                     /locus_tag="VHF44_04580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=3
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEX2124862.1"
                     /translation="LISIAKEKNLLSDVINTTVDLEMKGLISDLQTLIRQPSVSARRV
                     GLLECANLVAHIMLKSGITSEVLYLDDLENDKKDVPPPIVYGEVRSKANPNGRTILFY
                     NHYDVQPEEPLELWKVDPFSGKVEGNYIFGRGSSDDKGELITRIKAVEYFLKKTGDVP
                     CNVKFIVEGEEEIGSLHVEKYLTKYRHKLTCDGVIWEFGYIDERDRPIISLGMKGLLY
                     VELLSKGPSRDAHSSLAVLIENPAWRLVRALNTMRDNNGKILIRGWYKDVREFTPEEL
                     SLIANEPFDEEEFKKEYGIDKFVNNATGIEARKAFVGMSTCNIAGLLSGYIGEGAKTI
                     LPAEAKVKIDFRLVPDMIPEKQFELVKNHLKENGFEDDIDIKLIHGEAAVRMPSNHSF
                     IKQVEESAKETFGSAIISISSAGTGPMHSFAKVLGAPCVSIGSTYIYAKIHSPNEFAR
                     IDLLNKTTKCIGAILEKFAS"
BASE COUNT          824 a          480 c          370 g          819 t
ORIGIN      
        1 ccattatcgc catgaaatcc attatatcct gcatccatct aaaccaatat agaagtggat
       61 acatcctata acaatatctt tagcacaaag ggattgaata gcctaacata taatgatccc
      121 tatgcaaagc tttgttttac ttctatgata gcatcacagt gtcaaaaaaa agtaatatat
      181 attgatcttg acacaatgtt tgcggcatat gcgaagtcag acttgatatt attattgaga
      241 aatacaaact gtattaataa aacaattaat atttatcttc caacagaaga tagattcgaa
      301 tcgattttaa aagaagtcat tgaagatatg tatgattcat caattgttat tttcgattct
      361 gtcaacagct tttataatat gtattacaaa aaaattgata tcaactcagg gaaaggactt
      421 agtaatataa atcatctact ttcaattttt cttatgttat tgttaaagca tggcatatat
      481 ctgaatgtcc ccattctcgc gacgagtatg attcgctata aaaaatatac agaatgggtt
      541 caaaccccaa ctagcagacg acttttacac gaaaaaagcg ttgtgaagct aaatgtagta
      601 atgataaatg aagatgacct ttctctagag ataatatctc atcctacacg aacttcagag
      661 aaaattattt ttcaaaacct tggggtcaag tttggttcaa gcatagaaaa taatgcttaa
      721 cagagacagt tggctctatt ctcttaaagg ccaatattat cataatttat gaatactata
      781 aaatctacaa ccaaaacagt aatatcagta ctgtaaatac attggtaagt ataactatac
      841 attataatga taaaagaagt gatagaaagt caactttcta atataacata ttagcatact
      901 tgtcttgatt taaaagatta attaggaaaa cgagttacct ccaataatta ttttccaagc
      961 aacatggttt gtaatttgct tattattgca aagcatgcta ttatcttgta cttctttttg
     1021 gcaaataggc tactgtaacg atactaggtg gttttaactg tggttttaac tatcaacatt
     1081 aactagcaaa cttctctaaa atagcgccaa tgcactttgt cgtcttattt agcagatcaa
     1141 ttcgtgcaaa ttcgtttgga gaatgaattt ttgcatatat atatgtgcta cctatagaaa
     1201 cgcaaggtgc accaagtact ttggcaaaag aatgcattgg tccggttcca gcggatgata
     1261 tactaataat cgccgaacca aaagtctcct ttgctgattc ttctacttgt tttataaaag
     1321 aatggttgga aggcattctc accgctgcct caccgtggat taactttata tcaatatcat
     1381 cctcaaaacc attctctttt agatgattct tgactagttc aaattgtttt tcaggaatca
     1441 tatcgggaac aagtctaaaa tcaattttaa ccttggcctc agcaggaaga atagttttgg
     1501 caccctcgcc tatataacct gataaaagac cagcgatgtt gcatgttgac attccaacaa
     1561 atgccttacg agcttctatt cctgttgcat tattgacaaa cttatctatg ccatactctt
     1621 ttttgaattc ctcctcatca aatggctcat tagctattaa tgaaagttct tcaggagtaa
     1681 attcccttac atctttatac caacctctga tcaatatttt tccattgttg tctctcattg
     1741 tgttcaaagc ccttacaaga cgccatgctg ggttttcaat taatactgct agactggaat
     1801 gagcatctct agacggtcct ttggataata gttcaacata gagcaatcct ttcattccta
     1861 aactaataat gggtctatct ctttcatcaa tataaccaaa ttcccagatt actccgtcac
     1921 atgtaagttt atgtcgatac ttagtaaggt acttctcaac atgcaaactt ccaatttctt
     1981 cctcaccttc tacaataaat tttacattac atggcacgtc gcctgtcttt ttcagaaaat
     2041 actctactgc cttaatgcga gtaattagtt cgcccttatc atctgaagaa ccacgtccaa
     2101 agatatagtt accttcaact ttaccactaa agggatctac tttccataac tccaaaggtt
     2161 cttccggttg aacatcataa tgattgtaaa ataaaatagt tctgccatta ggattggctt
     2221 ttgatctaac ttccccataa actatcggcg gcggaacgtc ttttttatca ttttccaaat
     2281 catcaaggta taatacttcc gaggtaatac ctgatttaag catgatgtgt gcaacaagat
     2341 tagcacattc caaaaggcca actcgtcgtg cagatacact aggctgcctg atcaaagtct
     2401 ggagatcaga aataagacct ttcatctcca agtctactgt agtattaatt acatcactca
     2461 acaaattttt ctctttagca atagaaatta aag
//
LOCUS       DATABJ010000282         2859 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_182324, whole genome shotgun sequence.
ACCESSION   DATABJ010000282 DATABJ010000000
VERSION     DATABJ010000282.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2859)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2859)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2859
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182324"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            398..583
                     /locus_tag="VHF44_04585"
     CDS             398..583
                     /locus_tag="VHF44_04585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-domain-containing protein"
                     /protein_id="HEX2124863.1"
                     /translation="MVLEAKCPECDKRAEVDEEMIEVKCKHCGFQARYDDYVEMMKDR
                     AVGMTDDFQMNWDRRPI"
     gene            935..1351
                     /locus_tag="VHF44_04590"
     CDS             935..1351
                     /locus_tag="VHF44_04590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005840 - ribosome [Evidence IEA];
                     GO_function: GO:0003735 - structural constituent of
                     ribosome [Evidence IEA];
                     GO_process: GO:0006412 - translation [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="S6e family ribosomal protein"
                     /protein_id="HEX2124864.1"
                     /translation="MLEFIMAHFKLVVSDNKGKSISQELKDRAANPLLGSKIGEIIDS
                     SVIGIAGGKMKITGGSDKSGTPIRPDVHGGVKKYVLLSRGVGMRNTTEGNRIRKLIRG
                     NMITEEIYQLNCSLVEGSLPEKSASSNTNEIADVKK"
     gene            1461..2723
                     /locus_tag="VHF44_04595"
     CDS             1461..2723
                     /locus_tag="VHF44_04595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2 subunit
                     gamma"
                     /protein_id="HEX2124865.1"
                     /translation="MHWKETLPDWYIKEFGYQPSINIGTSGHVDHGKTTLIEAITGIW
                     TSAHSEELRRGITIKVGYADAAFYKCQNCPPPVCYSTQPTCTNCGGQSELIRVVSFVD
                     SPGHESLMANMLSGAALMDGSILVVAANEKVPQPQTREHLLALQVLGIQQIVIVQNKV
                     DLTEYEKARDNYEDIKNFVKGSIAEQAPVIPVSAQHKLNIDALIEAIENTIKTPPRTN
                     NAPAIMHVLRSFDINKPGIPIKQVKGGAIGGALVQGEFQIGDEIEIRPGFLEEKKSKY
                     EPINSTIATLGTGAGIVDRVRPGGLVAIGTKLDPTFIKSDSLIGSVVGKPNTLPKDVE
                     DITVEVHLFDTAVGTQDMVKVEPVKVKESLRLNIGTAATVGTVTNSKDSKIEIKLKKP
                     VCLIPKSRVAISRRIADRWRLIGAGMAV"
BASE COUNT         1001 a          454 c          590 g          814 t
ORIGIN      
        1 aatttatttt aatatttttc aaatagttat gatttcgtta atctgttaac agaattataa
       61 atttgtagga ttgcttcaag acaaattata cgtaactgcc aagaatacaa taagctagtg
      121 gcccagatac ggattaggac aaaatcacga accttaatga tatagttact gtgataattg
      181 gacatatgca ttcgctattc aaatataata attataaaag aaacaggttc gatgaacaac
      241 atccattatt atattgcatt cgattataaa ctcaatgcta taatttttat tattattaat
      301 ttttatttca aactaatagg atgttttaca gccagaaata aaggatataa tattatgaag
      361 agttaatcta aatatcccat ttgtcagaaa tagtattatg gttcttgaag caaagtgtcc
      421 agagtgtgat aaaagggctg aagtcgatga ggaaatgatt gaagtaaaat gcaagcattg
      481 cggatttcaa gcaaggtatg atgattacgt tgagatgatg aaagatagag cagtaggtat
      541 gaccgatgat tttcaaatga actgggacag acgtccgata tagttgcatc acatcatttt
      601 actccgagtg gcttaaataa acaatgtgta atgtagaaga taccatttga gaagataagt
      661 taattataaa agaaaggact atatttgcga atttgagcag tgcattaact ttatcgtagt
      721 atcaccaaaa gctgcctttg tcagagcatg ttagttcatt accacagttt cgacagcgga
      781 gatgacagac ttgaattggt gtcattatga atccgcatcg aagacatacc actaaattcc
      841 tgcctggagt ttcatccttg gcactcatac taacttgatg taaagtgagg tttttattct
      901 tttcaattct gcaaagatta ataaagacat aactatgctt gaatttatca tggctcactt
      961 taaacttgtt gtttctgata acaaaggtaa aagtatttcc caggaattga aagatagggc
     1021 agccaatcca ttactgggtt caaagattgg agaaattatt gattcttctg ttatcggcat
     1081 tgcaggaggt aagatgaaga ttactggagg aagtgataaa tcaggaaccc ctattcgtcc
     1141 agatgtacat ggcggagtga aaaagtatgt tttgctttct agaggtgtag gaatgaggaa
     1201 tactactgag ggaaatagaa taagaaagtt aatcagagga aacatgatta ctgaggaaat
     1261 atatcaactg aactgttccc ttgtggaagg cagtctacct gaaaaatcag cctcttcaaa
     1321 taccaacgaa attgcagatg taaagaagtg ataaataatt acaactaaat ttctttagat
     1381 cactgttgat atccatcttg aaataaaaaa tttttttgag gcaattacct taatatccct
     1441 ctagaaattt accatcatta ttgcactgga aagaaacatt accagattgg tatatcaagg
     1501 aatttggtta ccagccaagc atcaatatag gtacatctgg tcatgttgat catggtaaaa
     1561 caacattaat cgaagccata actggtatct ggactagcgc acacagcgaa gaattgagaa
     1621 gaggcattac aattaaagta ggctacgctg atgcagcatt ttataaatgt cagaactgtc
     1681 cacctccagt ttgctattca acacagccga cctgtactaa ttgtggaggg cagagtgagc
     1741 taataagagt tgtgagtttt gtcgactccc ctggacatga aagtttgatg gccaatatgt
     1801 tatccggagc agcgttgatg gatgggtcaa ttcttgtagt tgcagcaaat gaaaaggtgc
     1861 ctcaaccaca aaccagagaa catcttctcg cacttcaagt acttggaata cagcaaatag
     1921 taattgttca gaataaggtt gacttaaccg aatatgaaaa agcacgggat aattacgaag
     1981 atattaagaa ttttgtaaaa ggaagtatag cagagcaggc tccagtcatt ccggtgtcag
     2041 cgcaacacaa actcaatatt gatgcgttaa ttgaagcgat tgaaaataca atcaaaacac
     2101 ctcctaggac aaataatgca ccagctataa tgcatgtatt acgatcattt gatattaaca
     2161 agccgggtat tccaataaaa caagttaaag gtggagcaat cggtggagca ttagtccaag
     2221 gagaatttca gatcggagat gaaattgaga ttcgccccgg tttcttagag gaaaagaaga
     2281 gtaaatatga accaattaat tctactatcg ctacacttgg aacaggagcc ggtatagtag
     2341 accgcgtaag gccaggaggg cttgttgcca ttggaacaaa attagatcca actttcataa
     2401 aaagtgactc cttaattggc tctgttgttg gtaaacctaa tactctgcca aaagatgtgg
     2461 aagacatcac tgtagaggtt catctttttg atacagcagt tggtacccag gatatggtaa
     2521 aagtagaacc agtaaaggta aaggagtcat tgagattgaa tataggtact gcagccaccg
     2581 tcggaacagt tacaaattca aaagacagta agatagaaat aaagttaaaa aaaccggtat
     2641 gcttgatccc taagagcaga gtggcaatta gcagaagaat agcagataga tggagactga
     2701 tcggcgcagg catggcagtc taataaatgg atgttctttg cgacaccagt tttttaatgg
     2761 ttatagtgtc tacgcctata agacagttag acagagttga aagccagata ggcaaactga
     2821 accttttggt tcctagtatt gtaattgatg agcttaaac
//
LOCUS       DATABJ010000283         1682 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2136883, whole genome shotgun sequence.
ACCESSION   DATABJ010000283 DATABJ010000000
VERSION     DATABJ010000283.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1682)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1682)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1682
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2136883"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            252..1067
                     /locus_tag="VHF44_04600"
     CDS             252..1067
                     /locus_tag="VHF44_04600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-carboxytetrahydropterin synthase"
                     /protein_id="HEX2124866.1"
                     /translation="MERVVLDNDIKYFDSTGNLFRTRAELSISKMLSFLGQNFEYDVI
                     LKFKNDDIVNVDFKIDDKYIEVIDCENDVNKFLRIRRELPEIKIIAVGHSKYAGKVNE
                     LDSLFFFNSDYHQTGSIFIEDPSLAFDYAHILPLVEKCSILHGHTSTVMVEIIGDMKN
                     NLIIDFGEAKRIIKETLSILDHKFFINTKYLKKEDDIYYHISFEGPRGFFSLQLPKMT
                     TFLLPGEATVENLSTEIIKLLAPKMPPTVEALGIYVYEGVNKGAHIIAEIKKG"
     gene            1071..>1682
                     /locus_tag="VHF44_04605"
     CDS             1071..>1682
                     /locus_tag="VHF44_04605"
                     /EC_number="6.3.4.20"
                     /inference="COORDINATES: protein motif:HMM:NF018242.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="7-cyano-7-deazaguanine synthase"
                     /protein_id="HEX2124867.1"
                     /translation="MEKTTALVMLSGGLDSATCLYWAKKNFSEISVITFNYYNRIENE
                     KRAAAELARRANIVNFLEINIPFIKEFSDFNNNNHITPNYDRRWSSYIPARNLIFYSI
                     AAHYAEFLDIKWIIGGHNIHDGTFFIDATKDYIEKLNLLIKRGCLFRNDDPCVILIPL
                     AEMDRKTIINMAIELNVPIELTWSCHNKYKTHCGQCYACMQRIE"
BASE COUNT          610 a          248 c          278 g          546 t
ORIGIN      
        1 aaaattatga tagacttgtt aggtaacagt aatgtttctt cttcttcttc taactagctg
       61 ttatttgatt tcgcatatgt ggctttggtt ttaagagtag acagctaaca ttctaataaa
      121 attatatgag ataagtatta atataacaca acttgaatca aaatacgctt tatctgataa
      181 aagttttttc caaaataata caataaacgg tttataagtc acaatgagta attttttaat
      241 tagatattca tatggaaaga gtagtccttg ataatgatat taaatacttt gatagcacgg
      301 gtaatctgtt tcgaactaga gcagaattat ctatctcaaa gatgctatct tttttaggac
      361 aaaatttcga gtatgatgtg atattaaaat ttaaaaatga cgatattgtc aacgtcgatt
      421 ttaaaataga tgacaaatat atcgaggtca tagattgcga aaatgacgtt aataaatttc
      481 ttcgtatacg aagagaacta ccagaaatta aaattattgc agttggtcac tctaaatatg
      541 ctggtaaagt caatgaacta gactccttgt tcttctttaa ttccgactat catcagacag
      601 gttctatatt catagaagat ccatctcttg cttttgatta tgcacatatt ttaccattag
      661 ttgaaaaatg ttctattctg catgggcata catccactgt tatggtcgaa ataataggcg
      721 acatgaaaaa taatcttatt attgattttg gtgaagctaa gagaataatt aaagagacat
      781 taagtatcct tgaccataaa ttctttatta acacaaaata tctgaagaaa gaagatgata
      841 tttactatca tatatctttt gaaggaccac gaggcttttt cagtctacaa ttgccgaaga
      901 tgactacttt cttactccca ggtgaagcta ctgtagaaaa cctttcaaca gaaataatta
      961 aactgcttgc tccaaagatg ccaccaactg tcgaagcatt gggcatatat gtttacgaag
     1021 gagtaaataa gggagcacac ataatagctg aaataaaaaa agggtaaagg atggagaaaa
     1081 ccactgccct tgtaatgctc tctggtggat tagattctgc cacttgtctt tactgggcta
     1141 aaaaaaattt ttcagaaatt tctgtaatta catttaatta ttacaatagg attgaaaacg
     1201 aaaaaagggc tgcagcggaa ttagcaagaa gagcaaatat tgtaaacttt cttgagatca
     1261 acattccctt tattaaagaa ttttctgatt ttaataataa taatcatatc acacccaact
     1321 atgatagaag atggtcatca tatattcctg caaggaacct aatattttat tcaatagctg
     1381 cacactatgc tgaatttctt gatataaaat ggattatagg aggacataat attcatgatg
     1441 gaacattttt tattgatgca acaaaagatt acatagaaaa actaaacttg ttaattaagc
     1501 gtggatgttt gttccgcaat gacgatcctt gcgtgatact cattccttta gctgaaatgg
     1561 atagaaaaac tataatcaat atggcaattg aattaaatgt acctattgaa ttgacatgga
     1621 gctgccataa caaatacaaa acacattgtg gacagtgcta tgcatgtatg cagaggatag
     1681 aa
//
LOCUS       DATABJ010000284         2408 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_182995, whole genome shotgun sequence.
ACCESSION   DATABJ010000284 DATABJ010000000
VERSION     DATABJ010000284.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2408)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2408)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2408
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_182995"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1371)
                     /locus_tag="VHF44_04610"
     CDS             complement(<1..1371)
                     /locus_tag="VHF44_04610"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124868.1"
                     /translation="MSGTKNIESAFKIKYEMKFLFFGFIIAIAVAIVFIHIILFIIDG
                     DRYLGTTSAVLLGTTSCLSLFTILSNPRNIEVQKFKLLFVGVTLWFLGEFSYSYYQIV
                     LDTDAPYPGVGEIFYIAGYGPLILFTYRSFKTINRDGLIKPGVIAFVVILASVVPVTS
                     TILIFSQEVDFQSQWPDIAISIITNYSDIFLLSLSILILTKLPRNNPYTYHWILFTSF
                     LILATITDFCYLYIAIVDEEFLLETELIWEGMWAFAYLCILASLFWYYKLTHILSENL
                     EYSMTEDYAEKYRNNISVKDKSELSEKKQLHTENIQDFKLVENRIDEIIKGAKGEIAI
                     IFCSIITLNRKEAQSILKFLKEKTKSNILVRILFPLGVDDGIINSYSEVANVRIFERK
                     LENNDIIIVSDYIKMLLVSTTDPIDYDKETAYAVTYSDIQEIIYTYATTFEKLWLLQT
                     VTKLELK"
     gene            complement(1949..>2408)
                     /locus_tag="VHF44_04615"
     CDS             complement(1949..>2408)
                     /locus_tag="VHF44_04615"
                     /inference="COORDINATES: protein motif:HMM:NF013052.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005515 - protein binding [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="SET domain-containing protein-lysine
                     N-methyltransferase"
                     /protein_id="HEX2124869.1"
                     /translation="KKTLTWKKLYLDRTSGAGKGLFAQINFKKGNLIFTWKGVKKKGS
                     YPWYVGDRWLQIEKRQWIAPFRNNPGWFINHSCNPNSGIKDSVKIVAMKNIRRGEEVT
                     IDYSTSESENGWYLICHCENKNCRRIIRSYEFLPTKLKRKYRDFISEYLK"
BASE COUNT          743 a          461 c          367 g          837 t
ORIGIN      
        1 ttttaactcc aattttgtca cggtctgaag taaccataat ttttcgaacg ttgttgcgta
       61 tgtatagatt atctcttgga tgtcagaata tgttacagca tacgctgttt ccttgtcata
      121 atcgatagga tctgtagttg aaactagtag catcttaatg tagtcagata ctatgatgat
      181 atcattattc tctagttttc tttcaaaaat ccgtacatta gcgacctcgc tataactatt
      241 aataattcca tcatcgacgc ccaacggaaa aagaattctt actaaaatat ttgattttgt
      301 tttttccttc aaaaacttta agatgctttg tgcttctttt ctgttcaagg taattatact
      361 acagaatata atagcgatct cgccttttgc gccttttatt atttcatcaa tacgattttc
      421 aaccaatttg aaatcttgta tattttctgt atgcaattgc ttcttttcag aaagttcact
      481 tttgtctttg accgaaatat tgttccgata tttttctgca tagtcttctg tcattgaata
      541 ctccaaattt tcgcttaata tatgagtaag tttgtaatac caaaataatg aggcaagaat
      601 gcatagatag gcaaacgccc acattccttc ccatatcaat tcagtctcca aaagaaattc
      661 ttcatcaaca atcgcgatat acaaatagca aaaatcagtg atagttgcta atatcaggaa
      721 agaggtaaat aagatccagt gataggtata agggttgttt ctaggtaact ttgttagaat
      781 gagaatcgaa agagacaata aaaaaatatc gctgtagtta gttatgatac taatcgcaat
      841 atcaggccac tgggattgaa aatctacttc ctggctaaaa attaggatag ttgatgttac
      901 aggtactaca gatgcgagta ttaccacaaa cgcaataact cccggtttta ttaatccgtc
      961 cctgtttata gtcttaaatg atctgtaagt aaatagaatt agaggcccat agcctgcaat
     1021 atagaaaatt tccccgacac cggggtatgg tgcatccgta tctaatacaa tttgataata
     1081 cgaataggaa aattcaccaa gaaaccagag agttactcct acaaaaagca gcttaaattt
     1141 ctgaacttct atatttctag gattcgaaag tattgtaaac aaagataaac aggaagttgt
     1201 tcctaacaaa accgctgaag ttgtgcccag gtatctgtcg ccatcaataa taaatagtat
     1261 tatatgtata aacacgatag ctacagctat agcaattata aatccaaaga acaaaaattt
     1321 catttcgtac tttattttaa aagcagattc aatatttttt gttccgctca attacatatg
     1381 caccctttta gaaattattt aaattcctcc tcgataatat attgtgacat gattctaact
     1441 tgatatatct tgttccattc tactattttg tcattttcat ttggtcccgt gccattctta
     1501 atgttaaaat tgatttgact cgagctttcc gtaaaatttc cttagcctat cgctcaacta
     1561 caggttcgta attatacgct accgagcatt tccctcacca tagagacgtt cacatccttt
     1621 gcctttacct caatagtatt cgtaaaaaat tcacatcttt atggtacctg taatggcact
     1681 atagaaacaa gaacaagaat attccaaaga ttcagattta ggaaagacta tatcaaatat
     1741 tacacatgga acgcgagccc gtctatgtta tgaggacgag ttcctatata aaatatctca
     1801 cacttacacc ttgttaattc ccttctatct cttctagctg gttttaatat tcattataat
     1861 tagatcctct gcattatttt tcgtcttcca tagcagacgt agcagttagt tttccattgt
     1921 tatcgtctag gctagcacat atactagatc atttgagata ttcagaaata aaatctctgt
     1981 acttccgttt taattttgtg ggtagaaact cataggatct tattatgcgt ctacagttct
     2041 tgttttcaca atgacatatg agataccacc cgttttcact ttctgaagtt gaataatcaa
     2101 tggtcacctc ttcgcctctt ctaatgtttt tcatcgcaac aatttttacc gaatctttga
     2161 tgccagagtt tggattgcaa gaatggttga tgaaccatcc gggattattt ctgaacggag
     2221 cgatccattg acgtttttct atttgtagcc atctgtcgcc gacataccaa ggatagctgc
     2281 cctttttctt tactcctttc caggtgaaaa taagatttcc tttcttaaag tttatctgtg
     2341 caaaaagtcc tttacccgcg ccactagttc gatcaagata tagcttcttc catgtcaaag
     2401 tttttttc
//
LOCUS       DATABJ010000285         6941 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1485947, whole genome shotgun sequence.
ACCESSION   DATABJ010000285 DATABJ010000000
VERSION     DATABJ010000285.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 6941)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6941)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6941
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1485947"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..1799)
                     /gene="topA"
                     /locus_tag="VHF44_04620"
     CDS             complement(<1..1799)
                     /gene="topA"
                     /locus_tag="VHF44_04620"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003917 - DNA topoisomerase type I (single
                     strand cut, ATP-independent) activity [Evidence IEA];
                     GO_process: GO:0006265 - DNA topological change [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase I"
                     /protein_id="HEX2124870.1"
                     /translation="MPDKKDEPFVLVICEKPNAARRIAQALGTNSFKRSISSEGVPFF
                     YAISNNNSHYMIFPSIGHLYGLVDVTKNREIYPVFDLEWMPFLSNSHRLNRVEQIIKS
                     VSEVSKRATRFIHACDYDQEGEVIGYNILQYACKFKYDKSLRAKFSTLTDQEIRESFD
                     NLLKPNRGLAEAGRSRHILDFIYGVNLSRALSQSFKISNNGKKYHNLSIGRVQGPTLA
                     FAVDKEIDIRKHIPDPYWGIIADFEKNGHIIQAFYEKDKVQTLLEANSIINACNGKDG
                     LVSQVKVQKILLHPPTPFNLGDLQKEAYRLFKFSPTYTLSIAERLYLDAMISYPRTSS
                     QKLPLSTDYKKIIAHLSKVNSNYGSLTASLLSKDRLLPNEGNKTDPAHPAIYPTGEKP
                     KRQLDQMHCKIYDLIVRRFLATFGDPAINQHTTASIDIDGRYVFKSEGKSNIHEGWIH
                     FYKLYFVFHEVELPKLNQGDILRNVVVISKEKFTQPPFRFNQASLLEKMEKEQIGTKA
                     TRAQIISTLFTRNYIVTSQKFFGIEATDLGFAVIETMKKYVPNIVSTDFTRAMEKDLE
                     NIEICKSNSFLVIESAVDNLIEWLTRFKEKEVDR"
     gene            1894..3054
                     /locus_tag="VHF44_04625"
     CDS             1894..3054
                     /locus_tag="VHF44_04625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase domain-containing protein"
                     /protein_id="HEX2124871.1"
                     /translation="MTNKVCVLGAGSTKYGKLNESIIEIALNASKDAIESAGITPNDI
                     QAGYISNVFGVADKQVHMAPVIMSNLGIPHVPGLTIESACGSGSVMLREAYANIAAGF
                     YDCVLALGVEKITHTGTTQSTTLFSYCSDFFYEGGNGATFPGLFASIARAYMTTHKAN
                     EEDLAYVAVKNHENGILNPKAHVRKKITVDDVMKSPVVASPLKLYDCCPFSDGASAVI
                     LCNEEFAKKSQKPYVEVIGSGRGASPAAVQAREDITTIPSTISAAKQAYKMAGITPKD
                     IDFAEVHDCFTIAEIIDIEDLGFFPKGTAAHAVTEGATKINGEIPINPSGGLKSKGHP
                     IGATGVGQVVEVFEQFTGKAGERTVKNAETALTHNFGATGASAAVHIFRKVQ"
     gene            3092..3460
                     /locus_tag="VHF44_04630"
     CDS             3092..3460
                     /locus_tag="VHF44_04630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OB-fold domain-containing protein"
                     /protein_id="HEX2124872.1"
                     /translation="MSAREKFIASAKKNKILANKCSNCGHTMLETVNYCEKCFGSKFE
                     SIEVEGIGKVVTYTIQAVAPEGFEDVDSYAWVVFKVDNAPFRASGFLPGIPTPKDLPI
                     GTTVKVTGFDPKHGLLLEKL"
     gene            3822..4436
                     /locus_tag="VHF44_04635"
     CDS             3822..4436
                     /locus_tag="VHF44_04635"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124873.1"
                     /translation="MDKHQQFMSDILTASKVVHNQLTRLNMLDKKFTLMDKDLRYKIA
                     ANIKAGNNARARALAIELSNIHRIQQTTQNMSLALEVIVIRFSTINEFAMVLDTINPT
                     IEMIKDIQNDISRAVPTTSHLLSEMTSMTSDILLNTNIKSEVGKISTSMDSDALSILN
                     EVEGILEDEAKSRLPEVPTTIQEVRISRDVEEVTVKDNRMMIES"
     gene            4549..6675
                     /gene="nrdD"
                     /locus_tag="VHF44_04640"
     CDS             4549..6675
                     /gene="nrdD"
                     /locus_tag="VHF44_04640"
                     /EC_number="1.1.98.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008998 - ribonucleoside-triphosphate
                     reductase activity [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA];
                     GO_process: GO:0006260 - DNA replication [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HEX2124874.1"
                     /translation="MSHDYSYQTETRRDGVLESASKRVRMIFSVMASPNRIDILRILN
                     SKGPLTYSELKSLAGFKSKKESGKFAYHLRKLLRQSLVALNKAERRYTITNLGKLVLS
                     LARQIEERSIIESGKMYVRTTRHSIEEFNSHKIIQSLVREANMPLEQANKITEEVENK
                     IYKFQTSYLTSSLIRETVNSVLIEHGHEEYRNKLARLGLPASDIVEILNNIDTVKNGA
                     DSIMSKASQSVFSEHLLLNILPKDIADMHLNGEISISNSGIWSLLPDTVFLNITDFAE
                     VGLDLKGKFLNVSRIPAIKNSDDLGIALPILISLLSREVSTEIVLDGIIPLLLEDQIR
                     EPNEIASRFENILMASSVAPSYSPAGLPVTTITVQLDKFDRKSIDAVLSGYRSYIAST
                     PVPRIGISLINNDKLRDYTDTIASIVRAGGIVSILQNGSRSNNGVRKNMGDKGSGTVM
                     TLQSLSINLPRLAYQSNKDETYFRARLALMIKPALSAMSMRKKTIADLIRKQMIPVIA
                     NSAQFIQLGTTNVIINLTGIEESVYKILGHDASNDGAEILQKVLKTAVDVAAEHGKQL
                     GEDSIGIAMIHDDSATRFATLDSDKYGRISLLTSNQQKTVTYSQGLTLNARELLSSDN
                     NKHNSVIKECISIDNILNGGLSLTLDVSELYSDEEVKNAIESAADLPFFRLMSKTLVC
                     NTCGKRSSTQSSERCEYCKSPYLLMV"
BASE COUNT         2316 a         1158 c         1298 g         2169 t
ORIGIN      
        1 cgatcaacct ctttttcttt aaatctagtg agccactcga ttaagttatc aacggcagat
       61 tctataacca aaaaactatt gctcttacat atttcaatat tttctaaatc tttttccata
      121 gctctggtaa aatctgtaga aacaatattt ggtacatatt ttttcattgt ttctattaca
      181 gcaaatccga gatctgtggc ttcaattcca aaaaattttt gacttgtgac aatataattt
      241 cgggtgaaca aagtacttat gatttgtgct cttgtagcct ttgttccaat ctgttctttt
      301 tccatctttt ccaataaact agcctggtta aatcgaaatg gcggttgcgt gaatttctct
      361 ttagaaataa ctacgacatt tctcaaaata tcgccttgat tcaattttgg gagttctact
      421 tcgtgaaata caaaatatag tttgtaaaaa tgtatccatc cttcatgtat atttgatttt
      481 ccttcagact tgaaaacata acggccatcg atatcaattg atgctgttgt atgctgattt
      541 atcgctggat caccgaaagt cgccaagaac ctcctgacaa taagatcata gattttacaa
      601 tgcatttgat ctagttgtcg cttcggtttt tctccagttg gataaatggc tggatgtgcc
      661 ggatctgttt tatttccttc attaggtaaa agacgatcct tggaaagtaa tgatgcggtt
      721 aagcttccgt aattgctatt aactttagat agatgcgcaa taattttctt atagtctgta
      781 gataacggca acttttgact tgatgttctt ggataagaaa tcattgcatc aagataaagc
      841 ctttcagcaa ttgaaagcgt gtaagtagga gaaaatttga atagtctata tgcttccttt
      901 tgtaagtcgc ctagattgaa cggagtagga ggatggagta aaattttttg aactttaact
      961 tgactaacta atccatcttt gccattacaa gcattaatta ttgaattagc ttctaataat
     1021 gtctgtactt tgtctttttc gtaaaatgct tgaattatgt gaccattttt ttcaaaatct
     1081 gctattatgc cccaataagg atctggaata tgctttctaa tatcaatctc tttgtctact
     1141 gcaaaagcta gagtaggtcc ctgtactctg ccaattgaca agttatggta tttcttacca
     1201 ttattgctta ttttaaacga ttgtgaaaga gcccttgaaa gattcacgcc gtatatgaag
     1261 tcaagtatat gtctagatct accagcttca gccaagcccc tgttaggctt tagcaaatta
     1321 tcaaatgatt ctcttatttc ttgatccgta agtgttgaga atttagcacg taaggattta
     1381 tcatacttaa atttacaagc atattgaagg atattgtaac caataacctc accttcttga
     1441 tcataatcac aggcatggat aaatcgagta gctctttttg agacctctga tactgattta
     1501 ataatttgct ccactctatt tagtctgtgt gagttggaga gaaatggcat ccattctaaa
     1561 tcgaatacag gatatatctc tcgatttttt gtaacatcaa ccaagccata tagatgacct
     1621 atagaaggga atatcatata atgactatta ttatttgaaa tagcataaaa aaatggaaca
     1681 ccctctgatg agatagatct tttgaaacta ttggtcccaa gtgcctgtgc tatccttcgg
     1741 gcggcattag gtttttcaca gataacaagt acaaatggct catccttttt atcaggcatg
     1801 aattacatta aatagagaat aaatatggac gttattattg tatagattga tgtttaacaa
     1861 tttatatata tgcaaaaaag tatttctaaa cacatgacaa ataaggtctg cgttcttggt
     1921 gcaggcagta ctaaatatgg taaattaaac gaaagtatta ttgaaatagc attaaatgca
     1981 tcaaaagatg ctatagagtc tgcaggtatt acaccaaacg acattcaggc aggctatatc
     2041 tcaaacgttt ttggagtggc tgacaagcag gtacatatgg cacccgttat tatgagtaac
     2101 ttaggaattc cacacgttcc aggactcacc atcgagtctg catgtggttc aggttctgtt
     2161 atgttaaggg aggcatacgc taacatagct gcaggatttt atgattgtgt tttggcatta
     2221 ggtgtcgaga aaataacaca tacaggaact acccagagta ctactttatt ttcttactgt
     2281 tctgatttct tttatgaggg aggaaatggg gcaacatttc ctggattatt tgcatcaata
     2341 gcaagggcat atatgactac acacaaagct aatgaagaag accttgctta tgtagctgta
     2401 aagaaccatg aaaatggaat cctcaatcca aaggctcatg ttcgaaaaaa aatcacagtt
     2461 gatgatgtaa tgaaatctcc tgtcgtggct tcacctttga aactttatga ctgctgccca
     2521 ttttctgatg gggcatcagc tgttatactt tgtaatgaag agtttgccaa gaaaagccaa
     2581 aaaccatatg ttgaagttat aggttcaggc agaggagcat cacctgcggc agttcaagct
     2641 cgtgaagata ttactactat tccaagcaca atatccgctg caaagcaagc atacaaaatg
     2701 gctggtatta ctccaaaaga tattgatttt gcagaagtgc atgactgctt tacaatagca
     2761 gaaatcattg atattgaaga tcttggtttc tttccaaaag gaactgctgc tcatgctgta
     2821 acagaaggag caactaaaat aaacggcgaa attccgatca atccatctgg tggtttgaaa
     2881 tcaaagggac atccaatcgg tgcaacaggc gtaggtcaag tcgtagaagt ttttgagcag
     2941 ttcactggta aagcaggaga aagaactgtt aagaacgcag aaaccgctct tacacataat
     3001 tttggggcta ctggtgcaag tgctgctgtt catattttta gaaaggtaca gtaaaataat
     3061 aatgtctggt gctaacaggt aacagtaggc tatgagtgca cgagagaagt ttatcgcatc
     3121 ggctaaaaaa aataaaattc ttgccaacaa atgttccaat tgcggacata caatgttaga
     3181 aacagtaaac tattgtgaaa aatgctttgg tagcaaattt gaatctatcg aagtggaagg
     3241 aattggtaag gtagtcactt atacgatcca agctgtagcg ccagaaggat ttgaagatgt
     3301 cgactcatat gcgtgggtcg ttttcaaggt agataatgcg ccatttagag catcagggtt
     3361 tcttcctggg attccaaccc ctaaagatct acctatagga acaacagtca aagtaaccgg
     3421 ctttgatcca aaacatggtc ttttgttaga aaagctttag atgtagttac tttggtaggt
     3481 ggataagaga acgatacaat acatcacatc atacaaccag gcatatatag taattagaca
     3541 atatatacaa aaagctgagt aaatcaagct gttatcttct tgacttttgt agatgttggg
     3601 aatcgtccca ttacttttcc aaatgtaatc aaatgcactt tcaaaaattg aaatagccta
     3661 aaactattaa tgatgtatag atgaaattag gttcagattc gttcatccac cgctcatgtc
     3721 aaatttgaat ttgtagctta gctttgtaca gctatttgta tacatacatt aacatttagt
     3781 cttaacattt ttaaataatt acctttggat agaaaaaaaa gatggacaag catcaacaat
     3841 tcatgagtga tattttaacc gctagcaaag tagttcataa ccaactcact cgattgaata
     3901 tgcttgataa aaagttcact ctaatggata aagacttgcg ttataaaata gctgctaaca
     3961 taaaggctgg taacaatgct agggcaagag ctcttgcaat agagctatca aatatacata
     4021 gaattcagca gaccacacaa aacatgagcc ttgcactaga agtaatagta atacgcttta
     4081 gtactatcaa tgaatttgcc atggtgcttg ataccattaa tccaactatt gaaatgataa
     4141 aggatattca aaatgatatt tcgagggcag ttccaacaac aagccacttg ttatcagaga
     4201 tgacgtcgat gacatccgac attctgctaa acaccaatat aaagtcagag gtaggcaaga
     4261 tttcaacttc tatggattct gacgcgcttt caatattgaa cgaagtcgaa ggaatacttg
     4321 aagatgaagc aaagtcgcga ttacctgaag ttccaactac tattcaggag gttaggataa
     4381 gtagagatgt tgaggaagtc acagtaaaag ataatcgtat gatgattgaa agttaaatct
     4441 gttgacctgc taatcaattg ataggagtag ggcctattat ataattagtt aataaaaatt
     4501 tacaaagtag ttttaatcat ttatcgaata acgggtgcaa tggaacagtt gagtcacgac
     4561 tattcatatc aaacagaaac taggcgggac ggagttttag aatctgcttc aaaacgagtt
     4621 agaatgattt tttctgttat ggctagccct aatagaatcg atattctgcg tattttaaat
     4681 tctaagggac ctctgactta ttcggaatta aagtctcttg ctggattcaa atctaaaaag
     4741 gagtctggaa aatttgcata tcatttacga aaactgctaa gacaatcact tgttgctctt
     4801 aacaaggcag aacgacgtta cactattact aacttgggta aattggtatt gagccttgcc
     4861 agacagatag aggaaagatc aataattgaa agtggtaaaa tgtacgttag gacgaccaga
     4921 cattcaattg aagagtttaa ttcccataag ataatccagt cattagtaag agaggctaac
     4981 atgccccttg agcaggcaaa caaaattaca gaagaggttg aaaacaagat atacaaattc
     5041 cagacttcgt atcttacttc atcattaatt agagaaactg tgaattcagt gttgattgag
     5101 catggacatg aagaatatag aaacaagttg gccagattag gattacctgc ttctgatatt
     5161 gtagaaatat taaataatat agacacagtg aagaacggag ctgatagtat aatgtcaaag
     5221 gcttcacagt ctgtattctc agaacatctc ttgctcaata tacttccaaa agatatagca
     5281 gatatgcact tgaatggtga aataagtatc tctaacagtg gaatttggag cttgctccct
     5341 gatactgtat ttctaaatat tactgatttt gccgaagtcg gtctagactt aaaaggaaag
     5401 ttcttaaatg tctctagaat acctgcaata aagaattcag atgaccttgg aattgctctg
     5461 cctatattga tttcgcttct aagtcgagag gtttcaacag aaattgtact tgatggaatt
     5521 attcccttat tattagaaga tcagataaga gaaccaaatg agattgcatc acgatttgag
     5581 aatattttga tggcatcatc tgtagcccca tcttattctc cagctggact tcctgttact
     5641 acaataaccg ttcaattaga taaatttgat agaaaatcaa ttgacgcagt attgtctggt
     5701 tatagaagtt atattgcttc tactcctgtt cctagaatag gaatatccct aatcaataat
     5761 gacaaactaa gggattatac tgacactatt gcgtcaatag tacgcgctgg tggcatcgtt
     5821 tccattttac aaaatggatc tagaagtaat aatggtgttc gtaaaaatat gggagacaag
     5881 ggttctggta cagttatgac tttgcaatca ctttctatta atcttccaag actggcatat
     5941 caatcaaata aggatgaaac ttatttcaga gcaaggcttg ctctcatgat aaagcctgca
     6001 ttatctgcga tgtcgatgag gaagaagact attgctgatc ttataaggaa acaaatgatt
     6061 cctgtgattg ctaacagcgc acaattcata cagcttggaa ctactaatgt tataattaat
     6121 cttacgggca tagaagaatc agtatataaa attttaggtc atgatgcttc taatgatgga
     6181 gcagagattt tgcaaaaagt tttgaagact gctgttgatg tggctgcaga acatggtaaa
     6241 cagcttggag aagactctat aggaattgct atgatacatg atgatagtgc tacaagattt
     6301 gcaactctag actctgataa atatggtagg atctctcttc taacatcaaa tcaacaaaaa
     6361 acagttactt attcacaagg gttaacatta aatgccaggg aattgttatc gtctgacaat
     6421 aataaacata attctgtaat taaggaatgt atctcaatag ataatatact caatggtggg
     6481 ctttcgttaa ctttggatgt aagtgagctt tactctgatg aagaggtaaa gaatgcaata
     6541 gaatctgcag cagacctacc attctttcgt ctcatgtcta aaacattggt gtgcaacact
     6601 tgtggtaaaa gatcaagcac acagtctagt gaaaggtgcg aatattgcaa atctccttat
     6661 ctgctgatgg tttagaaaaa aggatgaaaa aagtcttgag atggaactat taatatttat
     6721 ttgatagtct acttttcgta tagatatagc aatcacaatc tatcatattc aaaatgcatt
     6781 cagagtatta tttctaaaat tcaacctaaa gataaaagtc gatctcttgc taattattgt
     6841 atttgtatat agctaaatag aacatcatca tagataatct gttaattagc ataaagcatt
     6901 aaagaaatag ctagagtatc actatttaaa ttagcatgtt a
//
LOCUS       DATABJ010000286         2462 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2137769, whole genome shotgun sequence.
ACCESSION   DATABJ010000286 DATABJ010000000
VERSION     DATABJ010000286.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2462)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2462)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2462
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2137769"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..847)
                     /locus_tag="VHF44_04645"
     CDS             complement(<1..847)
                     /locus_tag="VHF44_04645"
                     /inference="COORDINATES: protein motif:HMM:NF012382.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030170 - pyridoxal phosphate binding
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEX2124875.1"
                     /translation="MASRYNYLEKELNKLQSQNIYRKLKSVNIHGSTAIVNGKKAIHF
                     CSNDYLGLSQNKQVLRKTIEQLRQISQCSSRLIAGNDPKIIELEEQLSKHRGTECSLV
                     FPTGYMANLGAITALADKSTTIFSDELNHASIIDACISSRAKIKVFRHNDTDSLERLM
                     QNCVSKKIVITEGVFSIDGDISHLQKICNIAKSNNAITVVDDAHGDFILGSSDSFSGT
                     TRHLGVNNLIDIHISSLSKALGCFGGYVATSRTIREIFINKSRQFIYTSALPQHLCVS
                     ALSSIP"
     gene            complement(831..1805)
                     /gene="bioB"
                     /locus_tag="VHF44_04650"
     CDS             complement(831..1805)
                     /gene="bioB"
                     /locus_tag="VHF44_04650"
                     /EC_number="2.8.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004076 - biotin synthase activity
                     [Evidence IEA];
                     GO_function: GO:0051537 - 2 iron, 2 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:0051539 - 4 iron, 4 sulfur cluster binding
                     [Evidence IEA];
                     GO_function: GO:1904047 - S-adenosyl-L-methionine binding
                     [Evidence IEA];
                     GO_process: GO:0009102 - biotin biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="biotin synthase BioB"
                     /protein_id="HEX2124876.1"
                     /translation="MSDSVFIRGIAERILNKGENITLDESKQLLSTTDIVSLSYYANA
                     ITRKYNGDKVDVESLINAKAGFCPEDCSFCAQSSFYDTGITKYPLLPKEQILEKAKIA
                     KQNGSSSFCLVCAYRSPPEKDFFQICDIIQTIKSNVDIEVNVSLGFMTAQRARKLKSL
                     GVKRYNHNLETSESYFSQICRTHDFHDRLNTARIVKAEGLELCCGGIIGMGESSLQRL
                     ELAFSIASLQPEEVPINILIPRGGTPLQTLPSLHPMEIVKTIAIWRFIIPKTILKLAG
                     GREVHLRDNERIALKAGANGIITGGYLTTAGNNSEKDILMIREIGLEV"
     gene            2248..>2462
                     /locus_tag="VHF44_04655"
     CDS             2248..>2462
                     /locus_tag="VHF44_04655"
                     /inference="COORDINATES: protein motif:HMM:NF012464.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000150 - DNA strand exchange activity
                     [Evidence IEA];
                     GO_function: GO:0003677 - DNA binding [Evidence IEA];
                     GO_process: GO:0006310 - DNA recombination [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEX2124877.1"
                     /translation="MLKYNVKYALAYLRVSTEEQTVLNQKMALQKWSYEHNYQILDFF
                     EDSAISGKIAAIDRCGFRDLLELVKTAP"
BASE COUNT          765 a          483 c          413 g          801 t
ORIGIN      
        1 gaggaattga ggataatgcc gacacacata gatgttgtgg taaagcagag gtatagataa
       61 actggcggga tttattgatg aatatctccc taatcgttct agacgtagca acatatccac
      121 caaagcagcc caaagcttta ctcaaactgc ttatgtgtat atctatcagg ttatttacac
      181 ctagatgccg tgttgttcca gaaaaagaat ctgatgagcc aagaataaag tcgccgtgag
      241 catcatcaac cactgttata gcattattac ttttggcaat attgcatatt ttctgcagat
      301 gtgatatatc tccatctatg ctaaatacgc cttctgttat tacaattttt ttactaacac
      361 aattttgcat caatctctca agggaatcag tgtcgttatg tcgaaatact ttaatctttg
      421 cacgacttga tatacaagca tcaattatgc ttgcatgatt taattcatcg ctaaaaattg
      481 ttgtactttt atcagcaaga gccgtgatgg ctccaagatt tgccatatac cctgtcggaa
      541 atactaggga acactccgtt ccacgatgtt ttgacagttg ttcttccagt tctataattt
      601 tgggatcatt gccagcgatc agccgtgaac tacattgtga tatctgtcta agctgttcta
      661 tcgttttcct tagaacctgt ttgttctgtg acaatccgag ataatcatta gagcaaaaat
      721 gaattgcttt tttaccattg acgatcgcag tagaaccgtg aatattaaca gattttaatt
      781 tgcgatatat attttgactt tgaagcttat ttagctcttt ttctaaatag ttatacctcg
      841 aggccaatct ctcttatcat caaaatatct ttctcagagt tgtttccggc tgtagttaga
      901 tatccccccg tgattatacc gttcgcacct gcctttaaag cgattctttc attatctcta
      961 agatgaacct ctcttcctcc agccagcttt agaatcgttt tgggaatgat aaaacgccag
     1021 atggcaatcg tttttacaat ttccatggga tgaagagagg gtagagtttg aaggggagtt
     1081 cctcctcttg gtattaatat atttattgga acctcctcag gctgaaggga agcaatcgaa
     1141 aatgctagtt ccagtctctg taatgaagat tcgcccatcc caattatacc tccacaacac
     1201 agttcaagtc cttcagcctt tacaattctc gcagtattta atctgtcatg aaaatcatga
     1261 gtccgacaaa tttgagaaaa ataactttct gacgtttcca aattatgatt gtaacgcttt
     1321 acgcccaacg actttagttt acgggccctt tgagcagtca taaatccaag cgatacattt
     1381 acttcaatgt ctacattact cttaattgtt tgaattatat cgcaaatctg aaagaaatcc
     1441 ttctctggag gagatctata agcgcataca agacaaaaac ttgaggagcc attttgcttg
     1501 gctatctttg ccttttctaa tatctgctct tttggtaaaa gaggatattt agttatgcca
     1561 gtatcataga aagatgattg agcacaaaag gagcaatctt ctgggcagaa tccagccttt
     1621 gcatttatta aggactcaac atcaacctta tctccattat acttccttgt aatagcgttt
     1681 gcgtaatatg atagactcac aatatcagtt gttgaaagca gttgctttga ctcatcaagt
     1741 gtaatatttt ctcctttgtt caatatcctt tctgcaatac ctcgtatgaa cacagaatcc
     1801 gacattgaaa tgaagatgtt atagactggt aaataacctt tggccttatc taatacaaca
     1861 gaaataataa tttcaaattt cgaatttaga aatattcctg ttaggcttct tggagataat
     1921 catctatcaa tcattgccaa aaaaatgacg taaaagtctt gctttaatcc tctagaatac
     1981 aaattaccga tagtaatcta aataaactga acaaaataaa ttacaacaat cattatgctt
     2041 tgataacagt cattacaacg atattcgtac ttacctttgc tttgacagag tgtctaaaaa
     2101 acgacccata tttagaccgt ccaaaaaata gtacctttct tttacctata atttgacgct
     2161 tgaacacaaa acagatgatt taattgccga cacccttttt gaacggttta tcataatttc
     2221 ttaacaatgt catagttaaa tgttccaatg ctgaaatata acgtgaagta tgctttagca
     2281 tatctacgag tgagcacaga agaacaaacg gttcttaacc aaaaaatggc tttgcaaaaa
     2341 tggtcctatg aacataatta ccaaattcta gacttctttg aagactcagc gataagcggg
     2401 aagattgcag ctatcgatcg ttgtggattc agagatctac tggagcttgt gaaaactgca
     2461 cc
//
LOCUS       DATABJ010000287         2862 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_184561, whole genome shotgun sequence.
ACCESSION   DATABJ010000287 DATABJ010000000
VERSION     DATABJ010000287.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2862)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2862)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2862
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184561"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1162
                     /locus_tag="VHF44_04660"
     CDS             <1..1162
                     /locus_tag="VHF44_04660"
                     /EC_number="2.7.2.3"
                     /inference="COORDINATES: protein motif:HMM:NF012389.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0005737 - cytoplasm [Evidence IEA];
                     GO_function: GO:0004618 - phosphoglycerate kinase activity
                     [Evidence IEA];
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_process: GO:0006096 - glycolytic process [Evidence
                     IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="phosphoglycerate kinase"
                     /protein_id="HEX2124878.1"
                     /translation="FKGKKVFVRVDFNVSINNGSVGEDYRIRMTIPTIEYLTKRRSKV
                     IIASHLGRPKGYQCHYSLAPVARRLSDIIVKSKVSFVNDCVGNSVQKEIEKMNEGDIL
                     LLENLRFHKQEEINDFEFSRQLASLADIYVNDAFSTSHRKHASTYGAAKLFDLHLAGF
                     SLNKEVQYLSMIKENPIRPFTFVVGGVKIKDKIGALENLLPKADKVLIGGAAAYTFLK
                     AKGIETGNSLIDFEHLSWASEALSTFGDKIMLPNDHVISSSSKDIHASMVKGDIPKNM
                     AGFDIGIETAQRYSNEVSGNGSGTVFWNGPMGLFENGLFANGTINIAKSMALAYWRGS
                     KTLIGGGDTLEAMKKAGVSEGEVSHVSTGGGATLRFLAGDEMPGIDALKSNN"
     gene            complement(1225..>2862)
                     /locus_tag="VHF44_04665"
     CDS             complement(1225..>2862)
                     /locus_tag="VHF44_04665"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124879.1"
                     /translation="GIIVVVALAIGLFTDNNSGNNNNDLSNNKLAESSRIAAIDKFEN
                     QFCGNNANPNSNQYVSEYVLPSRCEMPLGIAVDNNASKVWYISTKNGVLGSYNIKENR
                     FDQEHTIPIWKSRQNPIDSSQVWTVKVDRQNNIWFTDEKQNSIWRYNNLLKTFEFFNI
                     PGISESFGTTYPVSLDFDSSGNIYFVGIRSTSLWFGNITEMKNGTSDGISQIPIPLQG
                     FAGIDRDLISTGSLVVDENNNSVWLSMLAFARKGLIFKYDINSKTFDVFNLPPDLRSP
                     VGITLENNNNNSDLWITDHGTSIFYKLNYSDRKITKFVTSQASPRIFGWNGTSEELGA
                     SAPSAAYTLPYWINKGSNGSIWFNEHTGNKIAVFNPVNMTLIEYWIPTQNALFGQCQP
                     TNTKNCGIANLLQFSVGNNNEVWFSEWSENKIGRVDTDKELPFSISSSEKEITIAKGK
                     SAEIKLNLKTTSSSSPSSDQTINMIKSGTFTATGALGNSTGSFSEELFSIAPGKSKEI
                     SFIFTPSSDLKSGEYTLMVGAENSAISYLNAIKINII"
BASE COUNT          933 a          466 c          531 g          932 t
ORIGIN      
        1 ttttaaaggc aaaaaggtct ttgtgagggt tgactttaat gttagcatca ataatggctc
       61 tgtaggggaa gattacagaa ttcgaatgac aataccaact attgaatatc ttactaaacg
      121 caggtccaaa gttattatag catcacattt aggaagacct aaaggttatc aatgtcatta
      181 ttctttagca ccggtagcaa gaagattatc tgacataata gtaaaatcta aagttagttt
      241 tgtcaatgat tgtgttggta attcagttca aaaagaaata gaaaagatga atgaaggtga
      301 tatcttatta ctagagaatc tacgatttca caagcaagaa gaaataaatg attttgagtt
      361 ctcaagacaa ctcgcatctt tggctgacat atatgtaaat gatgcattta gtacttctca
      421 tagaaaacat gcttctacct atggtgcagc aaagctattt gatttacatt tagcaggatt
      481 tagcctcaac aaggaggtgc aatatctttc aatgataaaa gaaaatccaa tcagaccatt
      541 tacttttgtg gttggaggag taaaaataaa agataaaata ggcgcattag aaaatttgct
      601 tcctaaagca gataaagtgc tgataggcgg agcagcagcc tatacttttc taaaggcaaa
      661 aggaatagaa acaggaaatt cattaataga ttttgaacat ttgtcttggg caagtgaggc
      721 attatcaact tttggtgata aaataatgct tccaaacgat catgttatat cctcttcttc
      781 taaagacatc catgcaagta tggtaaaagg agatattcct aagaatatgg cgggatttga
      841 tataggcatt gaaaccgctc agagatattc taacgaagta agtggcaatg gatcaggaac
      901 tgtattttgg aatgggccga tgggattatt cgaaaacggc ctttttgcaa acggaacaat
      961 caatattgcc aaaagtatgg cattggcata ttggcgtggc tcaaaaacac tgatcggtgg
     1021 cggcgatact cttgaggcaa tgaaaaaagc aggtgtttcg gaaggagagg taagccatgt
     1081 ttctactggg ggtggcgcta ctctaagatt tcttgctggt gatgaaatgc cggggataga
     1141 tgcattaaaa agtaataatt gaatattatt ttaacaataa ctgtcttctt gtaattgtaa
     1201 tagaaattat atggacatat acctctagat tatatttatt tttattgcat tcaagtatga
     1261 aatagcacta ttttctgcac caaccatcag tgtatattct ccggatttta aatccgagga
     1321 aggagtgaag ataaatgaaa tttcctttga ctttccagga gcgatagaaa ataattcttc
     1381 actgaaagat cctgtagaat ttccaagagc tccagtggct gtaaaagtac ctgactttat
     1441 catgttaatt gtctgatcag aggatggcga tgatgatgat gtcgttttta gattcaactt
     1501 aatctcggca cttttccctt tagcaatagt tatttctttt tcagaagatg aaatagaaaa
     1561 aggtagctct ttatctgtgt caactcttcc tattttattc tctgaccact cagaaaacca
     1621 gacctcgtta ttgtttccta ccgaaaattg gagtaaattt gcaatgccac aattcttggt
     1681 gttggttggt tgacattgac caaataatgc attttgtgtt ggaatccaat attcgatgag
     1741 agtcatattg acaggattaa atacagcaat tttatttcct gtatgctcgt taaaccatat
     1801 agatccattg gatcctttgt ttatccagta aggcagagta tatgctgctg atggcgctga
     1861 tgctcctaat tcctcgctcg tgccattcca accaaatatt ctaggcgaag cttgggaagt
     1921 gacaaatttt gtaatttttc tatcagaata gtttaattta taaaatatac tcgttccatg
     1981 atctgtgatc cataggtcac tgttattatt attattttct aaagtgatgc ctacaggaga
     2041 tctcaggtca ggaggtaagt tgaaaacatc aaaagttttt gaatttatat catatttgaa
     2101 aattagccct ttccttgcaa aggctaacat cgatagccat acgctgttat tattttcatc
     2161 aactacaagt gacccagtgc taataaggtc ccgatctatg ccagcgaatc cttgaagtgg
     2221 tataggaatt tgtgaaattc catcagaagt accatttttc atttctgtta tatttccaaa
     2281 ccaaagagaa gttgaacgta tacctacgaa gtaaatattg cctgaactat caaaatccag
     2341 agatactgga taagtagttc caaaagattc tgagatacca ggaatattaa aaaattcaaa
     2401 agttttcaaa aggttattgt atctccagat tgaattttgt ttttcatcag taaaccaaat
     2461 attattttga cgatcgactt ttactgtcca tacttgcgaa gaatcgatcg gattctgtcg
     2521 agatttccaa ataggaatag tgtgttcttg atcaaatcga ttctctttta tattataact
     2581 tcccaacacg ccattttttg ttgatatata ccaaactttg ctagcattat tatctacagc
     2641 tattccaagt ggcatttcgc atcttgaagg aaggacatac tcgctgacat attgatttga
     2701 attaggattg gcattattac cacaaaattg gttttcaaat ttatcaattg cagcaatcct
     2761 tgaactttct gcaagtttat tatttgataa atcattatta ttattgccgc tattattatc
     2821 agtaaataat ccaatagcaa gggcaaccac tacgattatt cc
//
LOCUS       DATABJ010000288         3208 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_184674, whole genome shotgun sequence.
ACCESSION   DATABJ010000288 DATABJ010000000
VERSION     DATABJ010000288.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3208)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3208)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3208
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_184674"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(90..2879)
                     /locus_tag="VHF44_04670"
     CDS             complement(90..2879)
                     /locus_tag="VHF44_04670"
                     /inference="COORDINATES: protein motif:HMM:NF013592.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M1 family metallopeptidase"
                     /protein_id="HEX2124880.1"
                     /translation="MQNDNASSLKAKKFQFPGSTPHYPPIFPFSVDYMMLKIKPDFDS
                     NTLKDCTQKLKITACEDISEIKLDIAEIDVHQVISSSYNTSVMSFDVLKNDDKLIITF
                     GQTLKKGNTTDLTIRYSAGYYHREDGIIGICKPRSGFYFVSSSEHSQNKQAWTQGQAS
                     ESKYWFPCIDDPQVKFAREIQVTVPQNDFIVISNGELIRKEGNIWTWIELNPTPAYLT
                     SVVIGKFDQEQQEYSNCHDDKNKSSSNSIPLIYYWPKEIPKKDAMLTFANTPNMMRFF
                     EEYFGMKYPYKKYSQVAVEEFEFGGMENTSCTTLTKYLLHDEIAAIDYTRDIDVVSHE
                     LAHQWFGDLVTCRDWSNIWLNEGFATYCEALYWESIKGFDEFCYKVMKVADEYLEESR
                     HLYKRPLVTTVYKHPDDLFDSHSYEKGGCILHMLRNDIGNDNFRRCINNYLDIYKNKT
                     SETDDLRKIVEDVSRKSMGRFFDQWVYRSGHPQLDIEFSLEQEDSRRIKVKIRQIHQE
                     DDGGSNTDREDPDCCNLFEFTLDISIVFSIADIEINNKLEAIYISQRITEHSIEIPKD
                     ARIEWISIDPQFKILKEIKSIKITNETNEFQLKEMLKNQLRKGKTIIERIEAARILKN
                     QYSEDVVDELHNAVIVDPFYGVSIEAANTLGSYHEKNNYAKTSKAYGALFSCLNKEGE
                     IFSRLHPEIKQAIVRNIGQFEREESINLLESLLHLQNESYFLRANAATAIGKSSKNTI
                     SSLDNMKKEKTISLLKETAIMSKSFRNVIANGAIDGLKEFSKDKDKDIVVDIANFLIE
                     NTNSNNEYFKRLAATSALSKFLRTTKDIDDEKHTKEEEMNQKVFNQLLGLLKDKRRKV
                     KINACKAFADNDAKPARPDTKIFEAIDALIYVAEHDLDGFVRREAERCVNIMREWIKE
                     WSSKPPTLDIKLRKE"
BASE COUNT          915 a          563 c          466 g         1264 t
ORIGIN      
        1 gcatatagaa gggttttatt aaacttctat tttgctttta tcttaaatat tgttcagaat
       61 ttagtgaaat atttactctt taaagatatt tactctttcc taagcttgat atctagagtt
      121 ggtggtttac ttgaccattc ctttatccat tctctcataa tatttacaca tctttcagcc
      181 tcccttctta caaatccgtc caaatcatgt tcggcaacat atatcaaagc atctatggct
      241 tcaaatatct tagtgtctgg tctagctggt ttagcatcat tgtctgcaaa tgctttacat
      301 gcattgattt ttactttccg tcgcttatcc tttaataatc ccaaaagctg gttgaatact
      361 ttttgattca tttcttcttc ctttgtatgc ttttcatcgt caatatcctt tgttgtacgt
      421 agaaatttgg ataaagctga ggtggcagct aatcttttga agtattcgtt attagaatta
      481 gtgttttcaa ttagaaaatt tgcaatatca actacaatat ctttatcttt atcttttgag
      541 aattctttta atccatcaat agcaccattt gcaataacat ttcgaaatga tttagacatt
      601 attgcagtct cttttagtaa ggatattgtt ttttcttttt tcatattatc aagagatgat
      661 atcgtattct tactactttt tccaattgct gttgcagcat ttgctcgaag aaaatagctt
      721 tcattttgta gatgcaatag tgattcaagc aaattgattg attcttctct ttcaaattgt
      781 cctatatttc gaactattgc ttgtttaatt tcaggatgca gtctagaaaa tatttctcct
      841 tccttattca gacaggagaa aagtgcccca tatgctttac tggtcttagc ataattattt
      901 ttttcatgat atgatccgag cgtatttgca gcttctatag ataccccata aaaaggatct
      961 actataactg cattgtgtag ttcatctact acgtcttctg aatattgatt cttgagtatc
     1021 cgtgcagctt ctattctttc aattattgtt tttcctttac gtaattgatt tttgagcatc
     1081 tctttgagtt gaaattcatt tgtttcgttt gtaattttta tagacttgat ttcttttaat
     1141 attttaaatt gtggatctat tgatatccat tctatccttg catcttttgg aatttcaatt
     1201 gagtgctctg ttattctttg agatatataa atcgcttcta gtttattatt gatttcaatg
     1261 tcagcaatag aaaaaactat acttatatca agagtgaact caaatagatt acaacaatca
     1321 gggtcttcac gatcagtatt actaccgcca tcatcttctt gatgtatctg tctaattttg
     1381 acttttattc tacgtgaatc ttcttgttct aaagaaaatt ctatatcaag ttggggatga
     1441 cctgatctat atacccactg atcaaagaat cgacccatac tctttcttga tacatcttca
     1501 acaattttac gcaggtcgtc agtttcgcta gtcttatttt tatatatatc aagataatta
     1561 tttatacatc ttctaaagtt gtcgttaccg atatcattac gtaacatatg taaaatgcag
     1621 cctccttttt cataagaatg agagtcaaat agatcatcag gatgcttgta gactgttgtt
     1681 acaagtggtc gtttgtatag gtgtcttgat tcttcaagat attcgtctgc tactttcatt
     1741 accttgtagc agaactcatc aaatcctttg atactttccc aatacaatgc ttcacaatat
     1801 gtggcaaaac cttcgtttag ccatatatta gaccaatctc tacatgttac caaatcacca
     1861 aaccattggt gagcaagttc atgggaaaca acatcgatat ctcttgtgta gtcaattgct
     1921 gctatttcat catgtaggag atattttgtt aaggtagtgc aacttgtatt ttccatacct
     1981 ccaaattcaa attcttctac tgcaacttgt gaatactttt tgtatggata tttcatacca
     2041 aaatattctt caaagaatct catcatgttt ggagtatttg caaatgttaa catcgcatct
     2101 ttttttggta tttcttttgg ccaatagtat attaatggaa tactgttact gctactcttg
     2161 tttttatcat catgacaatt agaatattct tgctgttctt gatcaaactt acctatcaca
     2221 actgatgtaa gatatgcagg agttggattt agctctatcc atgtccatat atttccttcc
     2281 ttgcgtatta attcaccatt agatataaca ataaaatcat tttgtgggac tgtaacttga
     2341 atttctcgtg caaacttgac ttgaggatca tcaatacatg gaaaccaata ttttgattct
     2401 gatgcttgtc cttgtgtcca tgcttgttta ttttgggaat gttcactgga tgatacaaaa
     2461 taaaatccac tccttggttt acaaatacca atgataccat cctcccggtg gtaatagcca
     2521 gcggaatatc tgatagtaag atcagttgtg ttaccttttt tcaatgtttg cccaaatgtg
     2581 ataatcagtt tatcatcgtt ttttaaaaca tcaaaagaca tcacagaagt attataagaa
     2641 gaagatatta cttgatgtac atctatttct gcaatatcga gtttaatttc acttatgtct
     2701 tcgcatgcgg taatttttag tttctgcgta cagtccttga gagtattaga atcaaaatcg
     2761 ggctttattt taagcatcat gtaatcaaca ctaaaaggga atattggagg ataatgaggc
     2821 gtacttcctg gaaattgaaa ttttttggct ttaagagaag aagcgttatc attttgcata
     2881 tcgatataat cactattcta cttacatagt tgctattaaa ggattgagca catcaaatgt
     2941 ttttaccatt tttaccatca tgcctcttcc aaataaacta attgatgcca catttttcac
     3001 ttcccttacc aataattgct ctttagagtt tgcaaaactt ttatcttgtt taacctttcc
     3061 actattgcaa caggtttact ttgggttttg ataagtatat gagatcattt gatttttgtc
     3121 atccaatcta tacatcttct actgtattat caatagaaaa tttgactcct ctatgatatt
     3181 attatgcagg tctgctgtat ctttaaat
//
LOCUS       DATABJ010000289         2620 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_185131, whole genome shotgun sequence.
ACCESSION   DATABJ010000289 DATABJ010000000
VERSION     DATABJ010000289.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2620)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2620)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2620
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_185131"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            196..1143
                     /gene="tfb"
                     /locus_tag="VHF44_04675"
     CDS             196..1143
                     /gene="tfb"
                     /locus_tag="VHF44_04675"
                     /inference="COORDINATES: protein motif:HMM:NF012600.4"
                     /note="stabilizes TBP binding to an archaeal box-A
                     promoter; responsible for recruiting RNA polymerase II to
                     the pre-initiation complex; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription initiation factor IIB"
                     /protein_id="HEX2124881.1"
                     /translation="MEPAEQQIPSTKNSKDMNNVSYCEQCNSDTVIFDMVSSEYVCSS
                     CGCVANAEIFTSDHNSSYSSQSTYSDRLRTGMPESLAIHHKGLSTLIGIGDTDARGKA
                     LEPAQRTKIQRLRTWNNRSQLNDSISRNLEKALKFLNNFGDKLYLSQAVMESAAYIYR
                     KAAIKKLAKGRSTLGLVGAALYAACRETATPKTISDVATVCNLSSKDVMSHYKLILRE
                     LSLQMPVLHGPDYVTLIANRLDLSEKTKREALKIYSHVQQNRISIGKNPRALAGAVIY
                     IAAHNCNEFLRQVEICQVADISTVSLRKRCKEIKETLEI"
     gene            complement(1145..2092)
                     /locus_tag="VHF44_04680"
     CDS             complement(1145..2092)
                     /locus_tag="VHF44_04680"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: protein motif:HMM:NF012376.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HEX2124882.1"
                     /translation="MDNLYRSSIMADADDFIKIIDAAVNIMYNERKYGSIVGGSITCG
                     FAELKIPQNVVIIGDLHGDLNSLFDILNDIEYEKFLASASNKMIFMGDYVDRGSQSIG
                     VLYTICYLKQKYPHSIVLMRGNHEAPIEFPFSSHDLPFEIVKRYGETGNQIYINRILP
                     FFRLLLLSTLIQSQALIVHGGVPTRCKGLTTHFKNSIGTAEQNIHDRWMEEVLWNDPR
                     PHIKNHKEWEPSRRGVGRHFGINISKSWLRLTGAKMIIRGHEPCRGFKIDHDGLVVTL
                     FSCKEAYPGFEAAYLSITTQQWQSIFNGTDLTPYIIKVT"
     gene            2356..>2620
                     /locus_tag="VHF44_04685"
     CDS             2356..>2620
                     /locus_tag="VHF44_04685"
                     /inference="COORDINATES: protein motif:HMM:NF026297.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix domain-containing
                     protein"
                     /protein_id="HEX2124883.1"
                     /translation="MPLNTTGWSNRGWLEIIEFILSMCENGARKTHVMYRCNLNSKQI
                     NEYLNFLLECGMLEKIQERLDSKRSIYRTSDLGRDFIIKYKQLA"
BASE COUNT          884 a          445 c          479 g          812 t
ORIGIN      
        1 ttttaaaaca aaaagatgtc aaacacacag tggttaaatc tgaacatagt ataaatataa
       61 ttgctataaa cctaccttat aatctatata tttgttgatt gatatttgga ttttcttaat
      121 ataattaggt ttttgtagaa tattctaatt tctagaaaaa ctaatgataa taaaagactc
      181 cgtgatgttt tcctaatgga acccgctgaa caacaaatac catcaacaaa aaattcaaaa
      241 gatatgaata atgtatctta ttgcgagcag tgtaacagcg acaccgttat tttcgatatg
      301 gtttctagcg aatatgtatg tagttcctgt ggttgtgttg cgaatgctga aatctttacc
      361 agcgatcata atagcagtta ttcgtctcaa tctacatata gtgatagatt aaggacaggt
      421 atgccagaat cccttgcaat acatcataag ggtttatcta cattaatcgg aattggcgat
      481 actgatgcca gagggaaggc tctcgagcct gctcaaagaa ctaagatcca aaggttaagg
      541 acatggaaca atagatcaca acttaatgat tcaatttcca gaaacttgga gaaggctcta
      601 aaatttctca ataactttgg agataagctg tatctcagtc aggctgtaat ggaaagtgcg
      661 gcatatattt atcgaaaagc tgctataaaa aaacttgcaa aaggcagatc aacccttggc
      721 ttggtcggag ctgcacttta tgctgcctgc agagaaacag caacgccaaa aacaatttca
      781 gatgtagcaa cggtttgtaa tttatccagc aaagacgtaa tgtctcatta caagttgatt
      841 cttagggagc tttctttaca aatgcctgtt cttcatgggc ctgattatgt tactcttatt
      901 gcaaatagat tagatttaag tgaaaaaaca aaacgtgaag ctttgaaaat ttattctcac
      961 gtacagcaaa atagaatttc aattggcaaa aatccaaggg cgcttgcagg agccgtgata
     1021 tatatagctg cacacaattg caatgaattt ctaaggcaag tagagatctg ccaggtagcc
     1081 gatatatcca ctgtatcgtt gagaaagcgt tgcaaggaaa taaaagaaac actggaaatt
     1141 tgacttatgt aacttttatt atataaggag ttaaatctgt gccattgaaa attgattgcc
     1201 attgttgggt tgtgatagat aggtaagccg cttcaaagcc tgggtacgcc tctttacaag
     1261 agaatagagt gacaaccaag ccatcatgat caatcttgaa gcccctgcaa ggctcgtggc
     1321 ctcttattat cattttagca ccagttaatc ttaaccaact tttagaaata ttaattccaa
     1381 agtgtcttcc aacacctctc ctagagggct cccattcttt atgattcttg atgtgcggtc
     1441 gcggatcatt ccataaaact tcctccatcc atcgatcatg aatattttgc tctgcagtac
     1501 caatggaatt tttaaaatgt gtcgttagcc ctttacatcg tgtaggaact ccgccatgca
     1561 caatcagtgc ctgactttgt atcaaagttg agagaagcaa tagtcgaaaa aatggtagta
     1621 ttctgttgat gtagatttga tttcctgtct ctccgtatcg ttttacaatt tcaaacggca
     1681 gatcatgtga agaaaatgga aattcaatgg gtgcttcgtg atttccacgc ataagtacaa
     1741 tagaatgtgg atatttttgt tttaaataac aaatcgtata caaaactcca attgattgac
     1801 tccctctatc cacatagtca cccatgaaga tcattttgtt acttgctgat gcaagaaact
     1861 tttcatattc tatgtcattc agaatatcga ataatgagtt taaatcacca tgaagatcac
     1921 caataattac aacattttgc ggaattttca attcagcaaa tccacatgta attgatcctc
     1981 ctacgatgct accatatttt ctttcattat acataatgtt gacagcggca tcgataattt
     2041 taatgaaatc atcagcatct gccataattg aggatcgata taagttatcc aagtacagtt
     2101 atagaatcca gagaggttaa taattttaac aatgatttat aaactgtaca ataagataat
     2161 gagataagaa gagaaatgag aaactcgttt ttcgcctatt tgcccttaac gaaagaataa
     2221 tgattgaaaa atttaaagcc gtgatatcta catgggggca tctattagag atatagaaat
     2281 gttctatgtt ctttttggat taaaaagtat gtttagcatt aaaagcaatg gatcgtgaga
     2341 tactttcggt tataattgcc acttaataca actggttgga gtaatagagg atggttagag
     2401 ataatcgaat ttattctttc gatgtgtgag aatggcgcaa ggaagaccca tgttatgtac
     2461 cgatgcaatt tgaattctaa acaaataaat gaatatctga actttcttct tgaatgcggc
     2521 atgctagaaa agattcagga acgactagat tcaaaacgtt ccatttatag gacaagtgat
     2581 ctagggagag attttataat taaatataaa caacttgcag
//
LOCUS       DATABJ010000290         2808 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1489679, whole genome shotgun sequence.
ACCESSION   DATABJ010000290 DATABJ010000000
VERSION     DATABJ010000290.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2808)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2808)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2808
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1489679"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..453
                     /locus_tag="VHF44_04690"
     CDS             <1..453
                     /locus_tag="VHF44_04690"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HEX2124884.1"
                     /translation="NGFQILIESGILPGALTTNNTLQFVCGWTTVKIINNKTPFTNKF
                     KINKEIIIPIAHGEGRYIADDKDLMYLKKKNRIVLKYTKNDPNGSTDLIAGICNSDGN
                     VMGMMPHPERAIESILVPDRISNQAVMIFTSLLSYLNIKHHYTPTIDS"
     gene            467..2602
                     /gene="purL"
                     /locus_tag="VHF44_04695"
     CDS             467..2602
                     /gene="purL"
                     /locus_tag="VHF44_04695"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: protein motif:HMM:NF002290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004642 -
                     phosphoribosylformylglycinamidine synthase activity
                     [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEX2124885.1"
                     /translation="MNILSKEELDYLKNKLSRNPNQIELDIIGAEWSEHCSYKSSKSY
                     LRLLPTKGKRVLVGPGYDAGILDIGDGFVVTVHIESHNHPSAVEPYGGAATGVGGVLR
                     DIMSMGTRPIALLDALRFSPITKTSKKNSAKSKWLFRNVVRGIADYGNCIGVPTVGGE
                     IEFDPSFEDYCLVDVASIGIGKKDRIITNSAKINDFIILAGGSTGRDGIHGASFASKT
                     LEEENRSAIQIPDPFLEKLLLEATIEAAEQRCIKALKDLGGGGLACCLSEASYNLKRG
                     FDVELGAVHTKHKNMIPTELMISESQERMMYITDEHKIDTLKAILDKYEIKYAIIGRV
                     GKHQDLVIRYNGKLVARMPSKVIANPPLILRKSKLPSYLKELSKNTISSTIPNDLNRV
                     FLSMLSNPTIAEKSWVYRQFDHEVGIRTVIKPGLGDASVLKITDDKFISIKLDGNSKH
                     CFLDPYQGTLGCLSEARRNIISSGAQPIGVIDHLQFGSPEDPQIFWTFTQAIDAISNF
                     CRYMKTPVIGGKVSLYNETIKGAIKPSPVIGMIGLVEKASWIMQCGIKQENSIFIIGS
                     TLDEMGASEYYEYYHNIIGGNVPKVDLRRDKLNGQAVLHLIRKHLVDCVHDCSKGGLA
                     VALSEMAIQGRVGIIIDLDSIPNTCSRLDRLLFSESHSRYIIGTRKPDEVEKYLAHID
                     GIVFARIGYVTAADNYVMTKKGKAVVNYL"
BASE COUNT         1008 a          461 c          551 g          788 t
ORIGIN      
        1 aatggctttc aaatactcat tgaatcaggc atactgccgg gagcgttgac aactaacaac
       61 accctccaat ttgtctgcgg ctggacaaca gttaaaataa taaataataa aacaccattt
      121 actaacaaat tcaaaataaa taaagaaatt atcattccaa ttgctcacgg cgaaggaaga
      181 tatatagcag atgacaaaga tttaatgtat ttaaaaaaga aaaatagaat cgtcttaaag
      241 tatacaaaga acgatccaaa tggatctact gatttgattg ctggaatttg caatagcgat
      301 ggtaatgtaa tgggaatgat gcctcacccc gaaagagcca tcgaaagtat tcttgtacct
      361 gataggattt ctaaccaggc agttatgata tttacatcat tattgtctta tctaaatatt
      421 aaacaccatt atacaccgac aatagatagc taattgtgaa aaaaagatga atattcttag
      481 taaagaagaa ttagactatc taaaaaataa actaagccga aatccaaatc aaattgaact
      541 agatattata ggagcagaat ggtctgagca ttgttcctat aaatcttcaa agagctatct
      601 aagattgcta ccaacaaagg gaaaaagagt tttagtaggt ccagggtacg atgctgggat
      661 acttgatatt ggagatggtt ttgtagttac ggttcatata gaaagtcata atcatccatc
      721 agcagttgaa ccttatggag gagccgcaac gggtgtagga ggagtacttc gtgatattat
      781 gtctatgggt acacgcccga tagcgctttt ggatgcgcta agattttctc caattacaaa
      841 aacaagcaaa aaaaattctg ccaagtctaa atggctattt agaaatgtgg ttcgtggtat
      901 tgctgattat ggtaattgta ttggcgttcc aaccgtagga ggcgagatag aatttgatcc
      961 ctcttttgaa gactattgcc tcgtagatgt agcgtcaata ggaattggaa aaaaagatcg
     1021 aattattact aatagcgcta aaatcaacga tttcataatt cttgcaggag gatccactgg
     1081 tagagatggt atccatggcg cttcctttgc atctaaaacc ttagaggagg aaaatagatc
     1141 tgcaatacaa ataccggatc cattcttaga aaaattactc ctagaggcaa ccatcgaggc
     1201 agcggaacaa cgctgtataa aggctctaaa ggatctaggc ggtggaggtc ttgcatgttg
     1261 tctatcagaa gcatcgtaca atctgaaaag aggatttgac gtggaattgg gtgcggttca
     1321 taccaaacac aaaaacatga taccaacgga attgatgata tcagagtctc aggaaaggat
     1381 gatgtatatt accgatgagc ataaaattga tacactaaaa gcaatacttg acaaatacga
     1441 aattaaatac gctataatag gcagagtggg aaagcatcag gatcttgtta taagatataa
     1501 cggtaaactg gtcgctcgta tgccttcaaa ggtcatagca aatccaccac ttatactcag
     1561 aaagtcaaaa ctaccatcat atctaaaaga attgtccaag aacacgataa gctcaactat
     1621 tcctaatgat ctaaataggg tatttctttc aatgttgtcc aatcctacga tagctgaaaa
     1681 atcctgggtt tatagacaat ttgatcatga agttgggata cggactgtaa taaaaccagg
     1741 attaggcgac gcaagtgttt tgaaaataac tgacgataaa tttatttcta ttaaacttga
     1801 cggtaactcc aaacactgtt ttttggatcc ttatcaagga actctagggt gtctgtctga
     1861 agcgaggaga aatataatct cttctggcgc tcagcctata ggcgtaattg atcacttgca
     1921 atttggaagc cctgaagatc cacagatatt ctggactttc acccaagcaa tagatgcaat
     1981 atctaatttt tgtagataca tgaaaacacc agtaataggt ggaaaggtaa gtctatacaa
     2041 tgaaactatc aaaggagcga ttaaaccatc cccagtcata ggtatgattg gattggtcga
     2101 gaaagcatca tggattatgc agtgtggtat aaagcaggaa aattctattt tcataattgg
     2161 ttctacatta gatgaaatgg gtgcatctga gtactatgaa tactatcata atataattgg
     2221 aggaaatgtt cctaaggtgg accttcgtag agacaaactt aatggccaag ctgttcttca
     2281 tcttattaga aagcatttag ttgattgcgt tcatgattgc tctaaaggag gattagcagt
     2341 agcattatcc gaaatggcaa tacaaggcag agtaggaatt attatagatc tagattccat
     2401 accaaataca tgttcaagac tagacagact attattttca gaatcccact ctcgttatat
     2461 tataggtaca cgtaaaccag atgaagttga aaaatatctt gctcatatcg atggaattgt
     2521 ttttgctcga attggctatg taactgctgc tgataactac gttatgacaa aaaaaggtaa
     2581 agcggttgta aattatctat aaaacaaatg acagaaagtt atggcaagtt aggaagaata
     2641 atgaataaca cacatgactt tagacgcaag atcaaggata gcaagaaata gactaaagca
     2701 gaaaagatag ccatctaaaa aatcagtaat tgttaaaaac gttttttagt gatttcatcc
     2761 actatttcac tgttatcttg gactataata agcataaaaa ttatcata
//
LOCUS       DATABJ010000291         1754 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_187115, whole genome shotgun sequence.
ACCESSION   DATABJ010000291 DATABJ010000000
VERSION     DATABJ010000291.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1754)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1754)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1754
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_187115"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            497..1231
                     /locus_tag="VHF44_04700"
     CDS             497..1231
                     /locus_tag="VHF44_04700"
                     /inference="COORDINATES: protein motif:HMM:NF012234.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0005524 - ATP binding [Evidence IEA];
                     GO_function: GO:0016887 - ATP hydrolysis activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEX2124886.1"
                     /translation="MFKNLFKKIDEVLGLEDEPSLPPEEKFFSDVVGYHDIKKLFMKS
                     IVSKDPIHILLTGPPASSKTIFLLEMMEGLDHAYFIDAVGASGAGMISYLFSNDTKYL
                     LIDEIDKLKKSDQVTLLNVMETGILSETKKGRTRQKKMYLSIFATSNEISKLSKPLRS
                     RFMELHLEEYTFEEFMEITRRLIVKRYHLDIPIAEKIGYSVWNKMKSKDIRDVIQIAK
                     LTKSLSDVDWLVDVQMKYGKKKHDSA"
     gene            1495..>1754
                     /locus_tag="VHF44_04705"
     CDS             1495..>1754
                     /locus_tag="VHF44_04705"
                     /inference="COORDINATES: protein motif:HMM:NF019095.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CHRD domain-containing protein"
                     /protein_id="HEX2124887.1"
                     /translation="MSIKITLATIAIIVALGSIATNGFINSALGQQTFTAELTGGDEV
                     PPVDTEATGTFNLVTVNQSSGYLLSVDQLANATAAHIHRGEEG"
BASE COUNT          657 a          265 c          282 g          550 t
ORIGIN      
        1 acaactacca ttcaattact atccactata tttctactat taccaaccca ttcgccagca
       61 atagatcagc agtttataat tttatgttac tagaaattca caaaacctaa accacataat
      121 atataagttg aggactataa attagccaaa gatctttttt aggataatat gtgctatttt
      181 accagcctga tgatatgaat tttcatcttg ttgataaaaa agtaaactct attacttgca
      241 gtagtttcaa ttgaactatt tgaatacata ggcatagatt ccaattattc atgaagctat
      301 tacatatttc agacattgat gtgctaatct ataattgatg ggttcttgca aatatgtaaa
      361 gattattgga ttacgatgaa aaacaaggtc ccagttagga tgtacgtatg tgattcaaaa
      421 tgttcagaac tcaaaccaca gcctttaata cattctctca taaatataat atttaaaata
      481 aaaaggcaag ataaaagtgt tcaaaaactt attcaagaaa atagacgaag tacttggatt
      541 agaagacgaa ccaagccttc ctccagagga aaaattcttt tctgatgtag taggatatca
      601 cgatataaag aagctattta tgaaatcaat agtatctaag gatcccatac atatattatt
      661 gacaggacct ccagcctctt ctaaaacaat ttttctatta gaaatgatgg aaggattaga
      721 tcatgcgtat tttatagatg ctgttggtgc ttcaggtgct ggtatgatta gctatctttt
      781 cagtaatgat actaaatatc tgttaatcga tgaaattgat aagttgaaga aaagtgatca
      841 ggtaacattg ctcaatgtga tggagacagg cattctatcc gaaactaaaa aaggaagaac
      901 aagacaaaaa aagatgtatt tatcgatatt tgcaacaagt aatgaaatta gtaaattatc
      961 aaagccatta cgatccagat ttatggaatt acatttagag gaatatacct ttgaagaatt
     1021 tatggagatt acaagaagat tgattgtaaa gagatatcat ttggatatac caatagcaga
     1081 aaaaattggc tattcagtat ggaataaaat gaagtctaaa gacattaggg atgtaataca
     1141 gattgcaaaa ttaactaaat cactatctga tgttgattgg ttagtagatg ttcaaatgaa
     1201 gtatggtaag aaaaagcatg actcagctta aaagtaatgt agattgccat tgcttccaaa
     1261 ataacgctta ttagatatat ttacatcttt tatattatta tactatttat ctatatattt
     1321 cccttaaatc cactttccaa atggtcaaaa tatgatgtaa agttcttctt tgctcactca
     1381 aaacaacaaa tgatataaaa tagaggataa atgcctttct taaggcatta actatatcta
     1441 aatgccatta ataatgacat atagttatta attatattgt ttagatatac acgtatgtct
     1501 atcaaaataa cactagctac aatagcaatt atagtagcgc tggggagcat agcaacaaat
     1561 ggttttatca attcagcact tggacaacaa actttcactg cagaacttac aggaggcgat
     1621 gaagtaccac ccgtagatac tgaagcaaca gggactttta atcttgttac tgttaatcaa
     1681 tcatcaggct atctattaag tgtcgatcag ttggccaacg ccacagcagc tcatatacat
     1741 agaggcgaag aagg
//
LOCUS       DATABJ010000292         5695 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_188443, whole genome shotgun sequence.
ACCESSION   DATABJ010000292 DATABJ010000000
VERSION     DATABJ010000292.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 5695)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5695)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5695
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_188443"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..834
                     /gene="purD"
                     /locus_tag="VHF44_04710"
     CDS             <1..834
                     /gene="purD"
                     /locus_tag="VHF44_04710"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004637 - phosphoribosylamine-glycine
                     ligase activity [Evidence IEA];
                     GO_process: GO:0006189 - 'de novo' IMP biosynthetic
                     process [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEX2124888.1"
                     /translation="GVILCDNANEAIEAIDVIMTKRKFGEAGNRVVIEERLIGEEASF
                     IALCDGKSILPLASTQDHKRIFDNDKGENTGGMGSYSPNLLIDDDLTEKIIKKIMLPA
                     VSAMRNENNIFKGFLYAGIMIDKESNEPSVLEFNVRMGDPECQPIMMRMNSDLLEYLE
                     AAYEGKLDSMPPIKWKKQFATCVIMAARGYPGNYHTGDIIQGIDSDFGENVMIFHGST
                     KRDSQNRIITDGGRVLGVTALGSSIEQATNNAYSAVHKISWGENGQYYRKDIAMKALR
                     H"
     gene            complement(831..1415)
                     /locus_tag="VHF44_04715"
     CDS             complement(831..1415)
                     /locus_tag="VHF44_04715"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: protein motif:HMM:TIGR02727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0030272 - 5-formyltetrahydrofolate
                     cyclo-ligase activity [Evidence IEA];
                     GO_process: GO:0006730 - one-carbon metabolic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEX2124889.1"
                     /translation="MISKKSEYKNKIRQSILQKRNTLSEREIHTRSILIQQRVTSLPN
                     FKSAKAIGAYYPKGSEVNTQNILSKVLEGQKILALPAIVRDKIFFYKISNMKALGDQL
                     ILSKYGIKEPSPSPTELIDDIDVIIVPGIAFDRNGYRLGYGRGYYDRYLQNKKCVFSL
                     GLAFEIQLLDNDLPREQFDQKVNAVVTEEKIMLC"
     gene            complement(1412..2278)
                     /locus_tag="VHF44_04720"
     CDS             complement(1412..2278)
                     /locus_tag="VHF44_04720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004488 - methylenetetrahydrofolate
                     dehydrogenase (NADP+) activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="tetrahydrofolate dehydrogenase/cyclohydrolase
                     catalytic domain-containing protein"
                     /protein_id="HEX2124890.1"
                     /translation="MTGKIIDGLAVADNVKKQVKKGVDALKSQGIQPSLATILVGDNP
                     SSATYIKNKQKAAEAVGITTCDHKLTSSVSQRELIDLVNLLNEDEKIHGILVQLPLPS
                     NIDKFAITNTINPAKDVDGLTPFNAGLLLSGSAYLKPCTPAGIIEMLDFYNIDLMGMD
                     VIIVNRSNLVGKPLAMLLLERNATVAICHSKTKDLKGKLRQADLVITAVGNREIFTLT
                     SDMIKPGSIIIDVGITRYERKITGDVDFEGVREKASWITPVPGGVGPMTVSMLLKNTV
                     YAASKRKASDNI"
     gene            complement(2380..3078)
                     /gene="purN"
                     /locus_tag="VHF44_04725"
     CDS             complement(2380..3078)
                     /gene="purN"
                     /locus_tag="VHF44_04725"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0004644 - phosphoribosylglycinamide
                     formyltransferase activity [Evidence IEA];
                     GO_process: GO:0009152 - purine ribonucleotide
                     biosynthetic process [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEX2124891.1"
                     /translation="MISGELKEEHFACLLGIYPYVSTKIVLINLGILISGRGSNMAAI
                     LSAIKSGNIKNINPAVVISNRTDAAGLKVAREDFGIPTEIVQSQGLKGWDYDKNVISV
                     LKKYDVRSRYGLVCLAGFMRLISAEFVKEYPMQILNIHPSLLPSFPGLHAQKQAIEYG
                     VKVSGCTVHFVDQGLDSGPIVVQRAVEVMDSDTEEELSERILRKEHELYPEAVRLFAE
                     GKIKIMGRKVLLGR"
     gene            3202..4200
                     /locus_tag="VHF44_04730"
     CDS             3202..4200
                     /locus_tag="VHF44_04730"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124892.1"
                     /translation="MLDPSRQTYCDMTFVSHAHTDHLHKKCGKHDFIKSKTLVSRETS
                     LIAEARGYRLSDSQEEQDEGFRLIDTGHILGSRGLLVNDDEIYYTGDISIKERAFMRP
                     APIPQVHTLIIESTFGRPQYVFPDLREVVHNANKIISRMYDKGIPVLLMGYPLGKAQL
                     LTELFGHWDPLYVHDSVYKMNSIYSKLGVRLKSTMKHSTAEDQNLLLKNKPWIMITPL
                     FHGRNGFIKRMKERYGAITIGFSGWAVDRNYKFMMGLDYALPMSDHCDYEDLVQVVKK
                     CTPKKIYTFHGFAIDFARTLRKLGFDAEPLLDRDVKRQEKDKDGSSVVSLDNYMNA"
     gene            complement(4201..5286)
                     /locus_tag="VHF44_04735"
     CDS             complement(4201..5286)
                     /locus_tag="VHF44_04735"
                     /EC_number="1.-.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0010181 - FMN binding [Evidence IEA];
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEX2124893.1"
                     /translation="MRTKFGFTQGLNVARLGLDETQVITACQIADRMDYDSIWAMDHS
                     NVPQWKNAVVNDAWLMLAAIGALTHNVELGTCVTDAIRRHPSSIALSTITLDRITKGR
                     AVLGIGAGEAQNVVDFGIEFSKPVTKFQEQLEVIERLFKSDPDNHVNFDGVYYKLINA
                     SLQAKSIRKPRPPVYIAAGAPKTLELCAKYGDGWIPIGYTPELFSSHANMIKEHAKKY
                     GRDLSNFQFANDVDIYFTDDGEEAWNKMKNAVKVSLYKPELLKVHNIPQDSEFDFRKY
                     FTEYAMNKPELMQQMKRAALKIPDSVARTAIGIGKPDDVIEMLERFIKAGTNHFIIRY
                     WGEGYFKNIEMFGNKVIPYFRDQEKTN"
BASE COUNT         1746 a         1036 c         1026 g         1887 t
ORIGIN      
        1 ggcgtaatac tatgcgacaa tgccaatgaa gcaatagaag ccattgatgt gattatgact
       61 aaaagaaagt tcggtgaggc tggcaatcgc gttgtcatcg aagagcgctt aataggtgag
      121 gaagcgtcgt ttatagctct atgcgatggc aagtcaattc tcccattagc ttctacgcag
      181 gatcataaac gcatatttga taatgataaa ggagagaata caggtggaat gggaagctat
      241 tcgcctaacc tattaatcga cgatgattta actgaaaaaa taatcaaaaa aataatgttg
      301 ccagccgtct ctgcaatgag aaatgaaaat aatatattta aagggtttct ctacgctggg
      361 atcatgattg acaaagaatc aaacgagcct tctgtcctag agttcaatgt gagaatggga
      421 gatccagaat gtcaacctat tatgatgaga atgaattctg atttacttga atatttggaa
      481 gcagcatatg aaggaaaatt agattcaatg ccaccgataa aatggaaaaa acaatttgct
      541 acatgtgtta tcatggctgc taggggttat ccaggaaatt accatacagg tgatattata
      601 caaggcattg attccgactt tggtgaaaat gttatgatat ttcatgggag tacaaaacgc
      661 gattcacaga atagaattat aacagatggt ggaagagttc taggtgttac tgcattaggt
      721 tctagcattg aacaagcgac aaataatgca tattccgcag ttcataaaat aagttgggga
      781 gaaaatggtc aatattatag aaaagatatt gcaatgaagg cattgagaca ttagcaaagc
      841 ataattttct cttcagtaac cacagcgtta actttttgat caaattgctc acggggaagg
      901 tcattatcta atagctgaat ttcaaatgcc aaacctagcg agaagacaca ttttttattt
      961 tgaaggtatc tgtcgtaata accccttcca tatcctagcc tatacccatt tctatcaaag
     1021 gcaatgccgg gaacaataat cacatcgata tcatctatga gttctgtagg ggatggtgat
     1081 ggttctttta ttccatattt acttaaaatt agttgatctc ccaaagcctt catatttgat
     1141 atcttgtaaa agaaaatctt atctcttaca attgcaggca atgccaaaat cttttgccct
     1201 tctaaaactt tgcttaatat attctgagtg tttacctcag atccttttgg ataatatgct
     1261 ccaatcgcct ttgcagattt aaaatttgga aggctggtga cccgttgttg aattaatata
     1321 cttcttgtat gaatttctct ctctgatagt gtattacgtt tctgtaggat agactgccta
     1381 attttatttt tatattcaga tttttttgaa atcagatatt atcactcgct tttctcttag
     1441 atgcggcgta aacagtattt tttaatagca tagatactgt cataggtcca acgccgcctg
     1501 gtactggagt aatccaggat gctttttctc tgaccccttc gaagtctaca tcacccgtta
     1561 tttttctctc gtatcttgta attccaacat cgattattat ggaacccggt tttatcatat
     1621 ctgaagtgag agtaaagatt tcccggttgc cgactgctgt tattactaga tcagcttgcc
     1681 tcagcttacc tttaagatct tttgttttag agtgacatat tgctaccgtg gcatttcgtt
     1741 ccaacaatag catagcaagt ggttttccta cgagattgct acgattaact ataatgacat
     1801 ccattcccat tagatcaata ttgtaaaagt ctaacatctc aatgattcct gctggagtac
     1861 atggttttag ataggcagaa ccacttaaca atagacctgc gttgaatggt gtaagtccat
     1921 caacatcttt agcaggatta atagtgttag ttatagcaaa tttgtctata ttagaaggaa
     1981 gaggcagttg aactaagatt ccgtgaatct tttcatcttc gtttaacaaa ttgacaaggt
     2041 ctattaattc tcgctgacta actgacgatg tcaatttatg atcgcatgta gtaattccta
     2101 cagcttcagc agctttttgc ttatttttta tgtatgtagc agatgatgga ttatctccca
     2161 caagtatagt agcaaggctg ggttgaatgc cttgactttt caacgcatca actccttttt
     2221 ttacctgttt tttaacatta tcagccacag ctaaaccgtc aattattttt ccagtcaact
     2281 aatgaagaga aatcaaaggt cactattttg cgttactagc aatggataca ttttctttta
     2341 taaatttcat ttttaaagtt tccatatatg aaagtttaat tatcttccaa gtaatacctt
     2401 tcgacccata atttttattt taccttctgc aaacagtctt actgcttcag gatataattc
     2461 atgttctttt ctcaatatcc tctctgagag ttcttcttct gtatctgagt ccattacttc
     2521 tactgccctt tgaactacaa taggtcccga atcgagtcct tgatcaacaa aatgtacagt
     2581 gcaccctgat actttgacac cgtattcaat tgcttgtttc tgtgcatgaa gaccgggaaa
     2641 tgaaggtaac aacgatggat ggatatttag tatttgcata ggatattctt ttacgaattc
     2701 ggcactaata agccgcataa aacctgctaa acaaacgagg ccatatcttg atcttacatc
     2761 atattttttt aatactgaaa taacattttt gtcataatcc catcctttca aaccttggct
     2821 ctgaacaatt tctgtaggaa ttccaaaatc ttcgcgggca acttttagtc ctgctgcgtc
     2881 agttctatta gagattacta ccgcaggatt gatgtttttt atatttcctg attttattgc
     2941 agagagaatg gcagccatgt tacttcctct gccggagatt agtatcccaa gattaatcaa
     3001 tactattttt gttgatacgt acggataaat acctaacaga caagcgaaat gttcctcttt
     3061 taattctcct gatatcaatc atatattttc cgaagaatgt taaaatacaa gttataataa
     3121 caaattaaaa ctaaccaatt ggcttctaaa atttgttttt ctcaatgcgg tatcgttatc
     3181 tacagtggtg gtaaaaaaat attgcttgat cctagtagac agacttactg tgatatgacc
     3241 tttgtttctc atgcgcatac tgatcattta cataaaaagt gtggcaaaca tgattttata
     3301 aaaagtaaga ctttggtctc aagggaaact tcgttgattg ctgaagcacg gggatataga
     3361 ttaagtgatt cacaagaaga acaagatgag ggatttcgat taattgatac gggacatatt
     3421 ttaggctcga gaggattgtt agtaaatgat gatgagattt attatacagg agatatctca
     3481 attaaagaaa gagcatttat gagaccagct ccaattcctc aggttcacac attgataata
     3541 gaatcaactt ttggcagacc gcagtatgtc ttccctgatt tgcgcgaagt cgtacataac
     3601 gccaacaaga tcatttctag gatgtatgat aaaggaattc ctgtccttct aatgggttat
     3661 cctttgggta aagcccaact attaacggag ctttttgggc attgggatcc gttatatgta
     3721 catgattctg tatataaaat gaactccatt tattccaaat tgggtgtacg attgaagagc
     3781 acaatgaaac attccactgc agaagatcaa aaccttcttt taaaaaacaa gccatggatc
     3841 atgatcacgc cattatttca tgggagaaac ggttttataa aacgcatgaa agagaggtat
     3901 ggggctatta caataggatt tagcggatgg gcggtcgata gaaactacaa gttcatgatg
     3961 ggacttgatt atgccttgcc tatgagcgac cattgtgatt atgaggatct tgtccaagtt
     4021 gtgaaaaaat gtactccaaa gaagatctac acatttcatg gattcgcgat agatttcgca
     4081 aggacattga gaaagctcgg tttcgatgct gaaccacttt tagatagaga tgtgaaaaga
     4141 caagaaaaag ataaagatgg ttcgtctgtt gtttctcttg ataattatat gaatgcttga
     4201 ttaattagtt ttttcctggt ctctaaaata tggaataacc ttgttaccaa acatttcaat
     4261 gttcttaaag taaccttcgc cccagtacct aataataaaa tgatttgtgc cggctttaat
     4321 gaagcgttca agcatttcta ttacatcgtc tggttttcct atgcctattg ctgttcttgc
     4381 aacgctatca ggtattttca atgcagccct cttcatctgt tgcataagtt ctggcttatt
     4441 catggcatat tctgtaaaat attttcgaaa gtcaaattct gagtcttgag gtatattatg
     4501 aacttttaac agctccggct tgtatagact aacttttact gcatttttca tcttattcca
     4561 agcctcttcc ccatcatctg taaagtaaat gtcaacatca ttcgcaaatt ggaagttaga
     4621 cagatctcgt ccgtattttt ttgcatgttc tttaatcata ttagcatgag agctgaataa
     4681 ttctggggta taacctatag gaatccatcc atcaccatat tttgcacata attcaagtgt
     4741 ctttggtgct cctgccgcaa tatatactgg tggtcgtggt ttacgaatgc ttttagcctg
     4801 aagggatgca ttaattaact tgtaatagac gccatcgaag ttgacatggt tgtctgggtc
     4861 agatttaaaa agtctttcta ttacttctaa ttgttcctgg aatttagtta ctggcttgct
     4921 aaattctata ccgaaatcta ctacattctg cgcttctcct gctccaatac caaggacagc
     4981 cctgcctttt gtaattctat ctaaagtaat agtcgaaagc gcaatcgaag atgggtgtct
     5041 tctgatagcg tctgttacac atgtgcctag ttctacgttg tgcgtaagag ctccaatggc
     5101 cgcaagcata agccatgcat cattaacaac agcatttttc cactgtggaa cgtttgaatg
     5161 atccatagcc caaattgaat cataatccat cctgtcagct atctggcaag cagttataac
     5221 ctgagtttcg tctagcccca gtcttgcaac attcagaccc tgcgtaaaac caaattttgt
     5281 tctcatttca aaatcttgca tcctccatag gaagttaata gttgaaagaa tgtaggaaac
     5341 ccaatactca tcttaaaata agaaaccaaa ttagcaccta tttaagtttg tcttgtttat
     5401 tagaaaaaac atcttttaat tttcttgaat ttataaatta tgattacatt gaagttatca
     5461 tcacttttac cagaacaaca tcatatcatt atggtgcagc atagtgcctt aatttgttaa
     5521 aagaaacaaa ccattcattc tgcttacaaa gaagctttat ataagaattt gatggatttg
     5581 tattgtctaa tataatgctt ctaccttctg aaattgaggc taaatctttg attccggcga
     5641 tcagagctat tttagcaaag aaactcatca aagagtatga cttaaaggaa gaagt
//
LOCUS       DATABJ010000293         3022 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1492887, whole genome shotgun sequence.
ACCESSION   DATABJ010000293 DATABJ010000000
VERSION     DATABJ010000293.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3022
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1492887"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..407)
                     /locus_tag="VHF44_04740"
     CDS             complement(<1..407)
                     /locus_tag="VHF44_04740"
                     /inference="COORDINATES: protein motif:HMM:NF014081.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016787 - hydrolase activity [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase family protein"
                     /protein_id="HEX2124894.1"
                     /translation="MSIIIENASLLLGCDLTFVNNGFIEIGKNGIINKVGDGNYRGII
                     DEERNVIDAEGFMIIPGFINAHTHIGDSIGKDFLIDHGLDERVHPVFGAKRNILQKTR
                     PDHLKMFIRSSAISMMKKGIVAFADFREGGIEGV"
     gene            complement(398..1198)
                     /locus_tag="VHF44_04745"
     CDS             complement(398..1198)
                     /locus_tag="VHF44_04745"
                     /EC_number="3.5.4.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0003933 - GTP cyclohydrolase activity
                     [Evidence IEA];
                     GO_process: GO:0009058 - biosynthetic process [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase IIa"
                     /protein_id="HEX2124895.1"
                     /translation="MTIQITIIRIEGYGAWTLTLGTDREAQIQMLQARIYYDIQRLFS
                     QKECLVYLNRFDEYFAITNGLSLKDHKDLQEEIATLYKNLTISMTIGKGNTSFEANVN
                     AYEARKAGNLLDRKTRIFGQTMSSSQSSKASPSTTNSNYSESAHIMHIDINGSEKISS
                     KMSPYEITALVMKLYAKLSEAFLKKGAMTFFLGGDNFMVISNNIKKEDAEIIIKSIAN
                     DIGITLNCGIGVGRNGRKAAEAATRALDTIRNLRNEGKIQPIYEIQCL"
     gene            complement(1195..1659)
                     /gene="ribH"
                     /locus_tag="VHF44_04750"
     CDS             complement(1195..1659)
                     /gene="ribH"
                     /locus_tag="VHF44_04750"
                     /EC_number="2.5.1.78"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020248448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_component: GO:0009349 - riboflavin synthase complex
                     [Evidence IEA];
                     GO_function: GO:0000906 - 6,7-dimethyl-8-ribityllumazine
                     synthase activity [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="6,7-dimethyl-8-ribityllumazine synthase"
                     /protein_id="HEX2124896.1"
                     /translation="MDKIRIAIIVSEFNSDITFQMLNKAKDHAQKIKADVRYICFAPG
                     SFDMPLLIEELLKKNDVDAAVTLGAVIKGETSHDDIVAENAARLIADLSLKYGKPIGL
                     GITGPDMTLEQAKDRIDIVPLRAVNAAVNMAIRIKKLKEVRSQLGRTETIID"
     gene            complement(1666..2349)
                     /gene="ribB"
                     /locus_tag="VHF44_04755"
     CDS             complement(1666..2349)
                     /gene="ribB"
                     /locus_tag="VHF44_04755"
                     /EC_number="4.1.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0008686 -
                     3,4-dihydroxy-2-butanone-4-phosphate synthase activity
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="3,4-dihydroxy-2-butanone-4-phosphate synthase"
                     /protein_id="HEX2124897.1"
                     /translation="MSAIEEAIDALRDGKFVLVHDDKGREDEIDMVMAAEYVKPESIA
                     TMRNDAGGLLCLAISNEITAKLGLAYMHDIIQSLSSINPIFSKLTDGKSPYGDKPSFS
                     ITVNHRDTYTGITDIDRALTISKLAEICKKIDSGGIEEFARNFRSPGHVPILIASKGL
                     LEERRGHTELCVYLAQMSKLVPAAVICEMLDSTTYKALSINKAKEYADINGITLLESG
                     QLKTHAKAA"
     gene            complement(2405..3013)
                     /locus_tag="VHF44_04760"
     CDS             complement(2405..3013)
                     /locus_tag="VHF44_04760"
                     /EC_number="2.5.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="riboflavin synthase"
                     /protein_id="HEX2124898.1"
                     /translation="MFTGIIEDVVEVKSICKINDTNKKAAVKLTISLGKISRGMKVGD
                     SMNINGACLTITKLSNGTAEFEMVDETIKRTCLGLVKRGDKVNIERSLRLRDRLEGHI
                     VLGHVDCTGIIDEIITTQTGTHMWIRIEDKEFSGSFVSKGSVAIDGISLTVVNAKDDR
                     ISIALIPHTLTTTTLGSKSKGNRVNVEIDIISRYVNSILPKK"
BASE COUNT          836 a          618 c          459 g         1109 t
ORIGIN      
        1 actccttcta tacctccttc cctgaagtct gcaaaagcaa ctattccttt tttcatcatt
       61 gatatggctg agcttctaat gaacatctta aggtgatccg gtctagtttt ttgcaaaata
      121 ttcctttttg ctccaaaaac aggatgaact ctttcgtcta gtccatgatc aataaggaaa
      181 tctttaccaa ttgaatctcc gatgtgtgta tgggcattaa taaatccggg tattatcata
      241 aatccttctg catctataac atttctttct tcatcgataa tcccacgata atttccatct
      301 ccaactttat ttattattcc attttttccg atttcaataa aaccgttgtt aacaaaagtt
      361 agatcacatc caagcaacaa gcttgcattc tcgattatta tagacattgt atttcatata
      421 ttggctgaat ttttccttca tttctcaaat ttctaatggt atccagtgct ctggtggcag
      481 cctcagcagc ttttctccca ttccttccga cacctattcc acaattcaat gtaataccta
      541 tatcattagc aatagattta ataattatct cggcatcttc tttttttata ttatttgata
      601 taaccatgaa attgtctcct ccaagaaaaa atgtcattgc tccttttttg agaaatgctt
      661 ctgataactt agcatagagc ttcattacta atgctgtaat ttcatatggc gacattttag
      721 agctaatctt ttcagaacca ttaatgtcaa tatgcattat gtgtgcagat tcagagtagt
      781 tagaatttgt agtagatggt gaagcttttg aagactgaga ggaagacata gtttgtccga
      841 aaattcttgt tttcctatct agaaggttgc ctgccttcct tgcttcgtaa gcatttacat
      901 ttgcctcaaa tgatgtattg ccttttccaa tagtcattga tatcgtaagg tttttgtata
      961 gagttgctat ttcttcctga agatctttat ggtcctttag tgaaagacca ttagttattg
     1021 caaaatactc atcgaatcta tttaaatata cgagacactc cttctgtgag aacaatcgct
     1081 gtatatcata ataaattctt gcctgcagca tttgaatctg cgcttctcta tctgtaccca
     1141 gcgtaagagt ccatgctcca tatccttcaa ttctgataat agtaatttgt attgtcaatc
     1201 tataatcgtc tctgttcttc ccaattgtga ccttacttct tttaattttt taattctaat
     1261 tgccatgtta actgctgcat ttactgcacg caatggtact atatcgattc tgtcttttgc
     1321 ctgttcaagg gtcatatctg ggccagtaat tccaagcccg attggcttgc catattttaa
     1381 agacaagtct gcaatcaacc tggctgcatt ttctgcaaca atatcatcgt gagatgtttc
     1441 tccctttatt acagcaccca atgtaacagc agcatctaca tcgttctttt ttaaaagctc
     1501 ttcaattaac aatggcatat caaatgaacc aggagcaaaa catatgtaac gtacatctgc
     1561 tttgattttt tgtgcgtgat cttttgcttt attcagcatt tgaaaagtaa tgtcgctatt
     1621 aaattctgaa actattattg ctattctaat tttatccaaa aattattagg ccgccttggc
     1681 atgagtcttc aattggccag attccaataa tgtaatacca ttaatgtcgg catattcttt
     1741 tgctttattt attgataacg ctttataggt agtggaatct aacatctcgc aaattactgc
     1801 tgctggcacc aattttgaca tctgtgctaa ataaacacaa agctcggtgt gtccacgcct
     1861 ttcttcgagc agaccttttg aagcaatcaa aattgggaca tgacctggtg accggaagtt
     1921 tcttgcaaat tcctctattc cacctgaatc tattttctta caaatttccg ccaacttaga
     1981 gattgtcaag gctctatcga tgtctgtaat tccagtgtat gtatcacggt gattaacggt
     2041 tattgaaaaa gatggtttgt cgccgtatgg cgattttcca tcggttaatt ttgaaaatat
     2101 tggattaatg ctcgataggc tttgaattat atcgtgcata taagctagtc ccaattttgc
     2161 ggtgatttca tttgaaattg ctaaacaaag taatcctcca gcgtcatttc tcatagttgc
     2221 aatactctct ggtttaacat attcagcggc cattaccatg tcaatttcgt cctcgcgtcc
     2281 tttatcatca tgaacgagaa cgaatttgcc atctcttaat gcatcaattg cttcttcaat
     2341 tgcagacaat taaataattt tcaacaagaa ttcattatat agtttactga aaatcgagta
     2401 aatactactt ttttggtagt atgctattta catatctact aattatatct atttcaacat
     2461 taactctgtt gcctttagat tttgatccta gtgtggtagt ggtcagtgta tgtggtatta
     2521 aagcaataga gattctatca tcttttgcat ttactacagt cagacttatg ccatctattg
     2581 ctactgatcc tttagatacg aatgagcctg aaaattcctt atcctcaatt cttatccaca
     2641 tatgtgttcc tgtctgagtt gtaataattt cgtcaattat tcctgtacaa tctacatggc
     2701 cgagaacgat atgcccttcc aatctatcac gtagacgtaa gcttctctca atgtttacct
     2761 tatctcccct cttgactaaa ccaagacaag tacgtttgat agtttcatct accatctcaa
     2821 attcagctgt accgttggat aactttgtaa tagttagaca ggctccattg atgttcatgc
     2881 tatcgccaac cttcataccc ctacttatct ttccaaggga tattgttagc ttgacagcag
     2941 ctttcttgtt cgtgtcatta attttacaaa ttgattttac ctcgacaaca tcttcgatga
     3001 tgcctgtaaa catattttct ta
//
LOCUS       DATABJ010000294         1739 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_1495113, whole genome shotgun sequence.
ACCESSION   DATABJ010000294 DATABJ010000000
VERSION     DATABJ010000294.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1739)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1739)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1739
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_1495113"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            226..474
                     /locus_tag="VHF44_04765"
     CDS             226..474
                     /locus_tag="VHF44_04765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfurtransferase TusA family protein"
                     /protein_id="HEX2124899.1"
                     /translation="MSTKSGESTTKTIDVRGLFCPEPVFRTKIEMEKLAIGDILKIVS
                     DDPESEEDVSRWVKRNGHEILSINKIKKDLEFTIKKAK"
     gene            476..1480
                     /locus_tag="VHF44_04770"
     CDS             476..1480
                     /locus_tag="VHF44_04770"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016765 - transferase activity,
                     transferring alkyl or aryl (other than methyl) groups
                     [Evidence IEA];
                     GO_process: GO:0006535 - cysteine biosynthetic process
                     from serine [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase family protein"
                     /protein_id="HEX2124900.1"
                     /translation="MTTVARPNIIDQVGRTPLIELTSFSTKRIKFYAKLEWSNPFGSV
                     KDRAAYWMIKDAERKGVLKKDKSIIIEPTSGNTGIALTGIASSLGYKVEIVIPEKVSE
                     ETKTILRQLGAILHETSDDLCPRVGAGTDQSIALAKAISKPRPDIYYMPNQYENDANY
                     LAHYESTGPEIWEQTNGNITHFFSGCGTGGTITGTATFLKEKNQNIKVVAVQAQRNHL
                     LQGLRNFEESSMPDLFRRREKVVDEWMTATNIDSFNMVKQLLTREGLLVGPSSGSVLS
                     SMLKAAEKLDNGHVVGIFADDGRKFRSLYLKENIFDKDEYDNALLSAKNMSNIAYTYS
                     "
     gene            complement(1499..>1739)
                     /locus_tag="VHF44_04775"
     CDS             complement(1499..>1739)
                     /locus_tag="VHF44_04775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0016491 - oxidoreductase activity
                     [Evidence IEA]"
                     /codon_start=2
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEX2124901.1"
                     /translation="GLFVAIGHEPNTAIFKGQLEMDDKGYIILKSQTKTSVEGVFAAG
                     DVHDYRYRQAVTAAGFGCMAALDVEKWLTERRHGN"
BASE COUNT          591 a          282 c          327 g          539 t
ORIGIN      
        1 agatagcttt ataaattata tttatggtgg actattccga taaaatattg taagtttccc
       61 ttgttataat ttgtcactga gatagattca gtgaattcac aactgaataa agataaaaaa
      121 ttcacattta agattatcta atgatagttt ttataacata attttcttct atgatcttca
      181 taaacattta atatattgat ggaattatct attgtgtttg ttagtatgag tactaaaagt
      241 ggcgagtcca caactaaaac tattgatgtc agagggcttt tttgtcctga accagtattt
      301 cgtactaaga tcgagatgga aaaactggca ataggcgata tactaaaaat agtatctgat
      361 gatccagaat ctgaggaaga tgtctcaagg tgggtaaaaa gaaacggtca tgaaatttta
      421 tcaataaaca aaattaaaaa agatcttgaa ttcacaatta agaaggcaaa atagaatgac
      481 aactgtcgct cgacctaata taattgacca agttggtcgt actcccttga tagaacttac
      541 ttcgttctca actaagcgta ttaaatttta tgcaaaattg gaatggtcta atccatttgg
      601 ctctgtaaaa gatagagctg catattggat gataaaggac gcagagagga aaggtgtgct
      661 aaagaaagat aagagcatta tcatagaacc tacttctgga aatactggta ttgctttaac
      721 tggtattgcg tcgtcattag gatataaggt tgaaattgtt attcctgaga aagtcagcga
      781 agaaacaaaa acaatattaa gacagttagg agcaattctt catgagacat ctgatgatct
      841 gtgccccaga gtaggagctg gaacagatca aagtatagcg cttgcgaagg caatatcgaa
      901 acctagacct gatatctatt atatgccaaa ccagtatgaa aacgatgcga attatttggc
      961 tcattatgaa agtactggtc ctgagatttg ggagcaaact aatggtaata tcactcattt
     1021 ctttagtggc tgtggtacgg gtggaaccat tactggaacc gcaacttttc ttaaggaaaa
     1081 gaatcagaac attaaagtag tcgcagtcca agctcagagg aatcatctct tacaaggtct
     1141 aagaaatttt gaagagtctt caatgccaga tttatttaga cgtcgtgaaa aagttgttga
     1201 tgaatggatg actgccacta atattgattc atttaatatg gttaagcagt tattaacaag
     1261 agagggttta ctagtaggcc cttcctcggg gtctgtcttg tcatctatgt taaaagccgc
     1321 tgaaaaacta gacaatggtc atgttgtagg aatatttgca gatgacggaa gaaagtttag
     1381 aagtctttat ttgaaagaaa atatctttga taaagatgaa tatgataatg ccctcctaag
     1441 tgcaaagaat atgtcaaata ttgcgtatac atacagctaa gtattgtaac aataactttt
     1501 aattcccatg tcttctttca gtcaaccatt tttctacatc taatgcagcc atacatccaa
     1561 atccagctgc agttactgcc tgacggtatc tataatcatg tacatctccc gctgcaaaaa
     1621 ctccctctac acttgtcttt gtctggctct ttaaaataat gtaaccttta tcatccatct
     1681 ctagttggcc tttaaatatc gcagtgttag gttcatgacc gattgcaaca aataatcct
//
LOCUS       DATABJ010000295         2355 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2149161, whole genome shotgun sequence.
ACCESSION   DATABJ010000295 DATABJ010000000
VERSION     DATABJ010000295.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2355)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2355)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2355
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2149161"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(295..1158)
                     /locus_tag="VHF44_04780"
     CDS             complement(295..1158)
                     /locus_tag="VHF44_04780"
                     /inference="COORDINATES: protein motif:HMM:NF018378.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-glucuronyl C5-epimerase family protein"
                     /protein_id="HEX2124902.1"
                     /translation="MNNRTFTLLHGLIIFLILSFPAVVCLPFIASAMLVPDDKGVMME
                     NYNGVQRKVYNPLSVAIGGMEYYLEYKNHGDKESKQYFINTADWLVNNANDKGEYSLW
                     EYNFPWRFYGWISPPYSSALAQAQGLNVLLAAYDLTKNEKYLIEANNALGAFLVDYEN
                     GGVVSNEDGDSLFLHLLAKPGFQKIYVLNGHTWSLLLLWNYYQQTQDPAVKAIFDKGI
                     KWLRENLWKYDTGSWSNYDQMENLSLPEYHILHITQLANLYEITGEQIFKEYSDRFDR
                     YNRNLPLDIIS"
     gene            complement(1317..1964)
                     /locus_tag="VHF44_04785"
     CDS             complement(1317..1964)
                     /locus_tag="VHF44_04785"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124903.1"
                     /translation="MNTPQVKKVTERFVLILTTGIILTFIAISVNEAVGQETSSNRQL
                     NVIFDSIKINNDHDPLFPGEWKIDSYVNGQRTQLWIGSELNRVSTGETVIFREKNINV
                     TIPENGTLRIVTVGAEFDIDLDDTLPNISGILDNDLPFLDYSDKAKDSIESIINFDRN
                     DAIGIIAKEYSAENNFGIGSYDECSESIDEAGDLYDAVDTSCDFRLRYTIKEKAD"
BASE COUNT          744 a          420 c          342 g          849 t
ORIGIN      
        1 caaatccata tcatatattt tgatgaaaaa tgctttgaga aactgctcga tgtcttggtt
       61 gtcatagtct tgtttattta ttgattgctt attatctgaa tgagttgatt attgtttgag
      121 ctgtctgcaa ataagatggt agcattctga tattcccata tatatctcca tcattatcta
      181 attttccttt ataataataa ctatattcat ctttttaaga ttcccactat tgctcatgtt
      241 aaatcctggt tatcgaatcc agatctacta ttgcagtaat tcttaaagat gtctctatga
      301 aatgatatcc agaggtaggt ttctattata tctgtcaaat ctatcgctat actccttgaa
      361 tatctgttcg ccagtaattt catatagatt tgccaactga gtgatatgta atatatggta
      421 ttcaggtaag gataaattct ccatctggtc ataattcgac caacttcctg tgtcgtattt
      481 ccataagttc tctctcaacc attttattcc tttatcaaat atggctttca cagcaggatc
      541 ttgggtctgt tgatagtaat tccaaagtaa tagtagtgac caggtatgac cattcaaaac
      601 atatattttt tgaaaacctg gttttgccag aagatgtaaa aataaagagt caccatcttc
      661 attgcttact actcctccat tctcataatc gactaagaat gcacctaagg cattatttgc
      721 ctcaattaga tatttttcat ttttagtcaa atcatatgca gctaaaagaa cattcagccc
      781 ttgtgcttgt gctaatgcag atgaatatgg aggagatatc catccataga atctccaagg
      841 aaaattatat tcccagagcg aatattcgcc cttgtcattc gcattattaa caagccaatc
      901 ggcagtgtta atgaaatatt gtttggattc tttgtcgcca tgattcttat attctaaata
      961 gtattccatt cctccaattg ctacagataa aggattgtat accttacgtt gaacaccatt
     1021 gtaattttcc atcataactc ctttatcatc aggaacaagc attgcggatg caataaaagg
     1081 gagacacaca actgctggaa aagacagtat caaaaatatt atcaagccat ggagaagcgt
     1141 aaaggttcta ttgttcatat ctatagatat gaaataggaa taaaggtgat atttagagta
     1201 ctggcaaatg atttattcct atctgaatta gtatattctt tttgagaatt aaatgatagt
     1261 acattattat tttttacaca gaatagatac atcgtaagct atatcatatt tcttatttaa
     1321 tcagcctttt cttttattgt atatcgtagc ctgaaatcac agcttgtatc cactgcatca
     1381 tacaggtcgc ctgcttcatc tattgactct gaacactcat cataactacc tatcccaaaa
     1441 ttattctcag cactatattc ttttgcaata ataccaattg catcgtttct gtcaaagttt
     1501 atgatagact ctatagaatc ctttgcttta tctgaataat ctaaaaatgg aagatcgtta
     1561 tccaaaatac cagaaatatt tggtaaagtg tcatcaagat ctatgtcgaa ctcggctcct
     1621 acagtcacaa ttctcaatgt tccattttct ggaattgtta cattgatatt tttttcccta
     1681 aaaattacgg tttcacccgt actaactcta ttcaattcag atcctatcca aagctgtgtc
     1741 ctttgaccgt ttacatatga atcaatcttc cattccccag gaaaaagggg gtcatgatcg
     1801 ttattaatct tgatagaatc aaagatcaca tttaattgac ggttgctaga ggtttcttgt
     1861 ccaactgctt cattcacaga aatggcgata aaggtcaaaa ttatacctgt tgttaaaatt
     1921 aatacaaaac gttcagtcac tttctttacc tgaggtgtat tcatgttaag tcccaattcc
     1981 aatagccaag atattatcag gtttttaatc tttcctcttt aagcgaaaaa aatagatgta
     2041 tcatattaat taattaattt ttaacaatag aaaagcttga tacgtttcga aattttagtg
     2101 taatgtagga actaactcat taatatgaac acactttaaa tttattttta atcctattcc
     2161 ctatatgtat ataatcataa tttctgtcag gtaattttta tcatttacta agaaattgta
     2221 gaattagtat cagtagtaga tgctgttgca tttgctgcaa gtagcaataa ttgctcatca
     2281 gcattgttta agtgttgaag agcttctatt aaatcacctt tctgtaaagc taaacgtact
     2341 tcaactaaat tgtct
//
LOCUS       DATABJ010000296         3323 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2152728, whole genome shotgun sequence.
ACCESSION   DATABJ010000296 DATABJ010000000
VERSION     DATABJ010000296.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3323)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3323)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3323
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2152728"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(<1..232)
                     /locus_tag="VHF44_04790"
     CDS             complement(<1..232)
                     /locus_tag="VHF44_04790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-sialoglycoprotein endopeptidase"
                     /protein_id="HEX2124904.1"
                     /translation="MISLGIESTAHTFGCSVVEDNPMNIKIGKVLSDKRDVYRPPQGS
                     GIHPREASRHHTEKSTDILMHSLDEAKVSIKDV"
     gene            complement(241..1443)
                     /locus_tag="VHF44_04795"
     CDS             complement(241..1443)
                     /locus_tag="VHF44_04795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015017667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEX2124905.1"
                     /translation="MLIGIIGKANVGKSTFFNAATELAVQAANYPFTTINSNVGIIHA
                     RQKCVCTEFGVQDNPIHSICIDGNRFIPLNLIDIAGLVPGAHSGKGLGNKFLDDARQA
                     DALIHIVDASGSTDSEGKPISPGTGDPISDIRFVEEEFDLWLASVVSRDWNKVSREAE
                     SQGQKLEQMLAKRLSGLAIGSRQIADALDETGLRYKKTISWTQEDIFNFCKTIRLKSK
                     PIVLAANKADLPTVDKNINAIKKMGRDVIVCASEAENLLRRAAKKGIIHYLPGDNSFN
                     IKQEAELNDQQKKALSIISNILSKYGSTGIQEVINYACFKLLNLIVVYPVEDDLKLTD
                     KKGNILPDARLLPQGSTARDLARTIHADLAKGFLYAIDIRSKQRLSSEYKLKNNDIIK
                     IVSATSRS"
     gene            1722..3053
                     /locus_tag="VHF44_04800"
     CDS             1722..3053
                     /locus_tag="VHF44_04800"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124906.1"
                     /translation="MNIIYYLTHSMRMLQHRGKAYWKMAIGNAVVEREGSLPSDENIL
                     KIAKKQKLLGDNGIGYLSKRSPQFPSMKLIQASIDGFFVDTEKLYLHPNIGQAKESDS
                     LFKIYQIFVDLLIKKQNPERAAEFLDRHLKGNMILKLHDHIYAYRNSSGFKPLVTATN
                     KSKTLSIIASENSLRTSLIDMHFNDVDPGQLIMMSKENGLEVLADLSGDRVMMDPFEF
                     IRESHVTAIVNGKSIYAIRKNIGKEQANFLATDIDIDSAYAEPDYTRPMTLGFSIEYQ
                     KYSKTFEAAEGIIKDRYDDSDHMIDFSEQISKNKLLTSGKSLKFIIRNHVHNKKIATI
                     QGTIQTGGTVKETIYYLRQAGVSRIYVIVCYVPTVDGRQVGLYTQNRELIANKYVGEV
                     SSIDDLNESLKKEINADAVYYNSPTILARGIGVSENDLWFPEWVRFLDYAK"
BASE COUNT         1055 a          587 c          598 g         1083 t
ORIGIN      
        1 caacatcctt tatactgact tttgcttcgt ctaatgaatg catcaaaata tctgtagatt
       61 tttcggtatg gtgtcttgaa gcttcacgcg gatgtatacc agaaccttga ggcggcctat
      121 aaacatctcg tttgtctgaa agtactttgc caatttttat attcatcggg ttatcttcga
      181 caacagagca accaaatgta tgggcagtgc tttctattcc tagggatatc atattttata
      241 tcaacttcta cttgttgcag aaacaatttt gataatatca ttgttcttaa gtttatactc
      301 cgaactcaat cgctgtttac tccgtatatc tatggcatat aagaaaccct tcgccaaatc
      361 agcatgaatc gtgcgcgcca aatctcttgc ggtcgatcct tgtggtagca accgcgcatc
      421 aggaagaata ttaccttttt tgtctgttaa tttgagatca tcctctacag gatataccac
      481 tatcaaattc aatagtttaa agcatgcata atttatcacc tcttgtattc ctgttgagcc
      541 atattttgaa agtatattgc ttattatgct aagcgccttt ttttgctgat catttaattc
      601 agcttcttgt ttaatattga aagagttatc tcctggcagg taatgaataa ttcctttctt
      661 tgcagctcgt ctgagtaggt tttctgcttc cgaagcgcag acaatcacat cacgacccat
      721 tttttttatt gcattaatat ttttgtctac tgttggtaga tctgctttat ttgcggctag
      781 aacaattggt tttgatttta atctgatcgt cttgcagaaa ttaaaaatgt cttcttgagt
      841 ccatgatatt gtctttttat aacgaaggcc tgtttcatcc agagcatcgg ctatctgacg
      901 ggagccaata gctagtcctg ataatcgttt agcaagcatt tgttccagtt tttgtccttg
      961 actttctgcc tctctagaga ccttattcca gtccctgcta acaactgagg caagccaaag
     1021 atcaaactct tcctctacaa atctaatatc agatattgga tctcctgtac ctggactaat
     1081 gggtttaccc tcactgtctg tagaaccaga tgcatccact atgtggataa gagcatccgc
     1141 ctgtcgtgca tcatctaaaa acttgttgcc taggcctttg cccgagtgtg cgccaggtac
     1201 caggccagca atatcgatta aatttagtgg aataaatcta ttgccgtcga tgcatattga
     1261 atgaattgga ttgtcttgga cgccaaattc tgtacaaacg catttctgtc tagcgtgtat
     1321 tattccaaca tttgaattga tggttgtaaa tggataattt gcagcctgta cagcaagttc
     1381 tgttgctgca ttgaagaaag tagattttcc aacattggct ttgcctatga taccaatgag
     1441 catgataata ctataatcat agtatagcct gattaatgtc tttcagcaat aagaagatca
     1501 gtaattatta taatacaaca gagtaacata ttgttatatt caagcaaaaa ttaattcatt
     1561 ttctgaaaac cataatgtta tcaatgcttg gaattgtaaa taatatttat aatatagcat
     1621 ttttaatgca gacaagattt ttatccgctc aataattaag acaacatggt aactaattgg
     1681 ctggaattgt cgccgtttat aatcacggtg cagatacacc gatgaacata atttattatc
     1741 tcacacattc aatgcgaatg ctccagcata gaggtaaagc atattggaaa atggctatag
     1801 ggaacgctgt agttgaaaga gaaggatcgc ttccttcaga tgaaaatatt ttgaaaatcg
     1861 ctaagaaaca aaagttactt ggtgataatg ggataggata tctttcaaag agatcaccac
     1921 agttcccaag catgaagtta atacaagcat caattgatgg cttctttgta gataccgaaa
     1981 agttatactt gcaccccaat attggacaag ccaaggaatc agattctctt tttaaaatat
     2041 atcagatatt tgtagatttg ttaatcaaaa aacaaaatcc tgaacgagca gcagagttct
     2101 tggataggca tttgaagggc aatatgattc taaaattgca tgatcacata tatgcttata
     2161 gaaatagtag tggttttaag ccccttgtca ctgctaccaa caagtctaag actttgagca
     2221 ttattgcatc agaaaattcg ttaaggacat cattgattga tatgcatttt aatgatgtgg
     2281 atcctggtca gttgataatg atgagtaagg agaatggact ggaagttctc gctgatctat
     2341 cgggagatcg agtcatgatg gatccattcg aatttatccg cgagtctcat gttacagcaa
     2401 tagtcaatgg caagagtata tatgccatta gaaaaaatat tgggaaagaa caagcaaatt
     2461 ttttagcaac cgatatagac attgattcag catatgctga acctgattat actcgtccaa
     2521 tgactttagg atttagcata gagtatcaaa aatattccaa aacttttgag gctgctgagg
     2581 gcataattaa ggatagatat gatgactctg atcatatgat tgacttttct gaacagatta
     2641 gtaaaaataa attactcaca tcaggcaaat cactaaaatt cataataaga aatcatgttc
     2701 ataacaagaa aatagcgaca atccaaggta ccatccagac aggaggtaca gtcaaggaaa
     2761 cgatctatta tttacgccaa gcaggggtaa gccgcattta tgttatagta tgttatgttc
     2821 caacagtaga tggccgtcag gttggtcttt atacacagaa tagggaatta attgcaaata
     2881 agtatgttgg cgaagtttca tccatagatg atctaaacga gtcattgaaa aaggaaatca
     2941 atgcagatgc agtttactat aactcgccta caattcttgc gcgtggtata ggtgtttcag
     3001 aaaatgatct ctggttcccc gaatgggtaa gatttttaga ttatgctaaa tgatgacaaa
     3061 aagctatact gactagtatc gagcaaacac ggagttattc tcacaaactt tttaatttaa
     3121 tttctctatt tctaaaataa atataaagca aaaaccaata catcaaataa agttttatag
     3181 taaactctct tacaaacata tttagaaaac tcaataattt tgtgtatcag tcttgaatat
     3241 atatcagtca gagatttttt gagatgaaat tcctgtattt agaatcaatt tttatttaca
     3301 tgtgttgtcc aagccattta tgg
//
LOCUS       DATABJ010000297         2618 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_199890, whole genome shotgun sequence.
ACCESSION   DATABJ010000297 DATABJ010000000
VERSION     DATABJ010000297.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2618)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2618)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2618
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_199890"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            198..500
                     /locus_tag="VHF44_04805"
     CDS             198..500
                     /locus_tag="VHF44_04805"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124907.1"
                     /translation="MCAHHEKEKGSRENHNLVTVGWSILVMGLSLAAVIILWMWFGHI
                     GPTFSEDVLAEQQRMLRERYDLPAQRVTEDPVELQTPPSLRNLEDNTTDINSNRTT"
     gene            748..1797
                     /locus_tag="VHF44_04810"
     CDS             748..1797
                     /locus_tag="VHF44_04810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0046873 - metal ion transmembrane
                     transporter activity [Evidence IEA];
                     GO_process: GO:0030001 - metal ion transport [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEX2124908.1"
                     /translation="MSLHIIKNKSKLLMVEMSNEECIKMEETAIQDHVEQINNNGNLW
                     IDIEKPTRNKIEMLGRKFPFNELNLEDCLSKIQITKIDRYDDHIFIILHFPTSQKEKG
                     IPRFSQLSIFAGMNYLVTVHQGDLRPLIEMFQICKKSHEQRQVLMGRSSGYLLHSIID
                     VLVDDLLHILMKVVGNLDDIEDAVFDDKIVVAKEISLLRREITTLRRVVIPLKRIVLE
                     MAKDIQKFSEEDLTLYFDDVKDHIDKVLEALEESKETIEIYKDTDYMLSTEKTNKILA
                     VLTILFTLSIPATVIGAFYGMNVNLPGGSETGSWNFFGTYTTLIVVLIISTLSALLMI
                     WYFRRLGWIGMTPSF"
     gene            2022..2597
                     /locus_tag="VHF44_04815"
     CDS             2022..2597
                     /locus_tag="VHF44_04815"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2124909.1"
                     /translation="MAENNTNNNHDSHVNVTVNVGDIKVQFNGSAESVLNSVITFLTK
                     QVPAIDLAKKISLNYAVTDLIDTYSNLIKITPEGPRVIPDTVEYSMKKLSDKEMVGLQ
                     LVASKIAKDLGKLSDDGMQVSEIQSATSLNPKSVSSRLSELVKAGHVVRENTRDGSES
                     VIYRITTSGIHWLASTIARKTKSSLSSSSSS"
BASE COUNT          922 a          391 c          488 g          817 t
ORIGIN      
        1 tctaccattg ggagcagcaa tatcttttca taaataagtt tcaactaaca ttttaaagta
       61 taagaaaaaa ttcctaatct ggctttgaat gataaaaacc gatgttttat tgctttaatt
      121 aagctaataa atatatatat atatatgtag aaaacgaata atttttaaaa gcaatcatcg
      181 tttaacattg ttgtattatg tgtgcacatc atgaaaaaga gaaaggctcg cgtgaaaatc
      241 ataatcttgt tactgtaggc tggtcgatat tggttatggg gctatctcta gccgcagtta
      301 taattctatg gatgtggttt ggtcatatag ggccaacttt ttcagaagat gttttagcag
      361 aacagcaaag aatgctgaga gaaaggtatg atcttccagc tcaaagagtc acagaagatc
      421 cagttgagct acaaactcct ccttctctaa ggaatttaga agataatact acagatatca
      481 atagcaatag gacgacatag tcttgtatgt ttaacttatt gataaatcta aagcatgaga
      541 ttatgacaat tttagaatat agtttaagga tcttggtata ggtaacataa ctttgagtat
      601 cttaaatttg taacagttac gtagtcgaga gaatttgcaa aacgaaatta tatcttctcc
      661 atattgtttt ttgtgcttgt tctgaatcag caattgaaat gtagattata gttgcatatc
      721 atttggacct atgaatattg ataatgtgtg tctcttcata ttatcaaaaa taagagcaag
      781 cttctaatgg tagaaatgtc taacgaagaa tgtatcaaaa tggaagaaac tgctatccaa
      841 gatcatgtag aacaaataaa caataatggg aatttgtgga tagacatcga aaaacctact
      901 cgcaataaaa tagagatgct tgggcgaaaa tttcctttta atgagctaaa ccttgaagat
      961 tgtctttcca aaatccaaat tacaaagata gatagatatg acgatcatat atttattata
     1021 ctacattttc caacttcgca gaaagaaaaa gggataccca gatttagtca attatcaata
     1081 tttgcaggaa tgaattattt ggttactgtg catcaaggag atcttaggcc actaatagag
     1141 atgtttcaaa tctgcaagaa aagtcatgag cagaggcaag tcctaatggg aaggtcatca
     1201 ggatatctgc ttcatagcat aatcgatgta ttggttgatg atcttctaca tatattgatg
     1261 aaagtagtag gcaatcttga tgatatagag gatgctgtat ttgatgataa aatagtagtt
     1321 gcaaaggaga tttctctttt aagaagagaa ataacaacac tcagacgcgt cgtcattcca
     1381 ctaaaaagaa ttgtattgga gatggccaag gacatacaga agttctcaga agaagatctt
     1441 acactttact ttgatgatgt aaaggatcat atagataagg tgttagaagc tttagaagaa
     1501 tctaaagaga ctatagaaat ttataaagat acagattata tgcttagtac cgaaaagact
     1561 aacaaaatac ttgcagttct tacaattctc tttactttat caattcctgc tacagtaata
     1621 ggcgcttttt atggaatgaa tgtcaattta ccaggaggga gtgaaacagg ctcttggaac
     1681 ttctttggta catatacaac tttgattgtt gtattgataa tctctacact ctctgcatta
     1741 ttgatgattt ggtatttccg tcgtctagga tggattggaa tgactccttc attttagcta
     1801 acattattag tgcgtattgt cattataaca tccttactat ttcttaattt ttaaaatcat
     1861 ggcatgttat gataagttaa taacaagaga attgtctcct aagttatatg tacatttttt
     1921 atcaaaataa gaatgtgtat atatacttct agggctgcat ttgtatgtga cggacaagga
     1981 gagacagatg aaaaaggatt tcatgatggg atgtggtaaa gatggctgaa aataacacta
     2041 acaacaatca tgactcgcat gttaacgtca cggtaaacgt aggtgatata aaggtacagt
     2101 tcaatggctc tgctgaatca gttcttaatt ctgtcattac ctttctaaca aaacaagttc
     2161 cagcaatcga tttggcaaag aaaatttcat taaattatgc agtaactgat ctcatagata
     2221 catattcgaa tttaatcaaa attactccag aaggtcccag agtaatcccg gatacagtag
     2281 aatatagtat gaaaaagtta tctgataaag aaatggttgg cttacagttg gtagcctcaa
     2341 aaattgcaaa ggatctgggc aaattgtcag atgacggaat gcaggtatcc gaaattcaat
     2401 ctgcaacatc actcaatcca aaatctgtta gctcacggct atctgaattg gtaaaagcag
     2461 gacacgtagt aagagagaac acaagggatg gaagcgaatc tgtcatttat agaattacta
     2521 cctctggtat tcactggttg gcatctacaa tcgccagaaa gacaaaatcc tctctatcat
     2581 catcatcatc atcataatca gaatggtggt tcagaagg
//
LOCUS       DATABJ010000298         2476 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2156892, whole genome shotgun sequence.
ACCESSION   DATABJ010000298 DATABJ010000000
VERSION     DATABJ010000298.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2476)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2476)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2476
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2156892"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            17..628
                     /locus_tag="VHF44_04820"
                     /pseudo
     CDS             17..628
                     /locus_tag="VHF44_04820"
                     /inference="COORDINATES: protein motif:HMM:NF012472.4"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
     gene            929..1621
                     /locus_tag="VHF44_04825"
     CDS             929..1621
                     /locus_tag="VHF44_04825"
                     /inference="COORDINATES: protein motif:HMM:NF018712.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1326 domain-containing protein"
                     /protein_id="HEX2124910.1"
                     /translation="MKVKKRNTTKWKMHAYFLDACNCDWGCPCQFNANPTHGNCEGIS
                     GYHIVSGSYGNSDDVKLNGLNMALIASWPGPIHEGHGKASYYIDYRADEKQFEALSNI
                     ITGKAGGKPFAVYASTIEEFQKPKRASVKFQTKDIRSRVAVFAAEIRARGKRTRERST
                     KDTIAEAWLEPIRNPVTGKVHRAIIEIPEGFESSRMDQASIKKLVANDDYLNFRYEGT
                     YGSFSESAWKGP"
     gene            1697..2224
                     /locus_tag="VHF44_04830"
     CDS             1697..2224
                     /locus_tag="VHF44_04830"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124911.1"
                     /translation="MLTSIILKRISARQRPTAHIDFFAHPDAFLRRWEIYPDGKRAKM
                     PFLDERQLKQLGVKIYKNTGITFLPNEYSPLLLITGQILRKASFEKGFPFQYAENTHE
                     DHKKNLTPDPLVKDDQAIVINVKNKGIVILTGCGHAGVINTINYAKKITGVDKIYSVI
                     GDFIFQQMVESMKKP"
BASE COUNT          900 a          365 c          483 g          728 t
ORIGIN      
        1 taacaatccg tattacatgg atgctctcaa atacctatcc gaccttcggg atgaaggaat
       61 aatcaagtat ataggtctta caaatttcga tactgaacgc atgcagataa tgatagagtc
      121 ggatctacag attgtgtcta accaggttca atattcgatt atagatcgta ggccagaggt
      181 aaagatgata ccattttgtc tggagcataa cataagtctc ctgacctatg gaaccatctg
      241 tggagggctg atgtcagagc gttatatagg aagaatacag ccatctgctg ctgagtaaaa
      301 tacattaagc ttacgaaaat atatgcagat aatagatgca tggggtggat ggaatttgtt
      361 ccaagaactt ttatcgactt tgaagagaat tgcacaaaag cacaatgtaa gcattgcaaa
      421 tgtagcaacg cgctatattc ttgccaagcc tgcagtagca ggcgttatta ttggtgttcg
      481 actaggaata gttgatcaca gaaacaataa tgcacaggta ttcaacttta gtttggataa
      541 gacagattct gatgctatag atgctgtatg tacaaagtca aataacttgt ttgagataat
      601 tggagattgt ggcgatgaat atagatgaac taaccatatt tgcacttcat taacatttta
      661 gaattaaatt tcgtgtacgg cctaactgca gtaactgcaa agtgactgca atcaatttag
      721 aattaaaaat aaaaagaata acaaattaca tcttcgtcgg ttagctgggc gtggttatgg
      781 cactacgtta aacagattat tgaaatatta taaaaaaata ttaatcatat gctctttgaa
      841 gtctttacgt ggaagtagat atgtagatat gtcatgacaa ttaataaaaa gaaccgttat
      901 attatcaata gaaaaggaga gcaaacactt gaaggttaag aaaagaaata caactaaatg
      961 gaaaatgcat gcatattttc tggatgcttg taattgtgat tggggatgtc cttgtcaatt
     1021 taacgccaat ccaactcatg gtaattgcga aggaatctct ggatatcata tagtgagtgg
     1081 tagttatggc aatagtgatg atgttaaatt aaatggactt aatatggcat tgattgcttc
     1141 ttggcctggt cctattcatg aaggtcatgg aaaagcatca tactatatag attacagagc
     1201 agatgaaaaa cagtttgaag cattatcaaa cattattaca ggtaaagcag gaggtaaacc
     1261 ttttgcagtc tatgcaagca caattgaaga atttcaaaaa ccaaagagag caagtgtaaa
     1321 gtttcaaact aaggatataa gaagtcgtgt tgcagtattt gctgcagaaa taagagcacg
     1381 cggaaaaaga acaagagagc ggtccactaa agatactatt gctgaagcat ggcttgaacc
     1441 aattagaaat ccagtaacag gtaaagtcca tagagcaata attgaaatac ctgaaggctt
     1501 tgagtccagc agaatggatc aagcatctat aaaaaaactt gttgcaaatg atgattatct
     1561 taactttcga tatgaaggga catatggaag tttctcagaa agtgcttgga aaggaccata
     1621 aaagataaaa taattcaatt attatatttg aattagatta tctctatagc ttccttgatg
     1681 tttatgattt tgattcttgc ttacatcaat tattctcaag agaatatctg ccagacaacg
     1741 acctactgct catattgatt tttttgcaca ccctgatgct tttctaagac gatgggagat
     1801 atatcctgat ggaaaaagag caaaaatgcc attcttagat gaaagacagc taaaacaact
     1861 gggggtaaaa atatacaaaa atacaggcat aacatttctc ccaaatgaat attctccttt
     1921 actattaatt acaggacaaa tactacgaaa agcaagtttt gagaaaggat ttccatttca
     1981 atatgcagag aacacacatg aggatcataa aaagaacctt actccagatc cattggttaa
     2041 agatgatcaa gcaatagtaa tcaatgtcaa aaataaagga attgtaattt taacaggttg
     2101 tggtcatgca ggagttataa acacgataaa ctatgcaaag aaaataactg gagtggacaa
     2161 gatttattcg gtaataggag atttcatctt ccagcagatg gtggaatcta tgaagaagcc
     2221 atagattcga cactagaaga gttacaaaaa gcagatcctg aatatattgt accttgtcat
     2281 tgtactggtt ggaaagcaac aaatagaatc atcgaaacta tgcctgaaaa gttcatacag
     2341 acaggagttg gtacagtgtt tactttttag ttactaattt aactttaatt attgaaagga
     2401 agtctataat aaagaagaat aatatttatt tttactggtt taagctttga tgatttttta
     2461 tttattattg ctttct
//
LOCUS       DATABJ010000299         1633 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2157962, whole genome shotgun sequence.
ACCESSION   DATABJ010000299 DATABJ010000000
VERSION     DATABJ010000299.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1633)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1633)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1633
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2157962"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(230..1216)
                     /locus_tag="VHF44_04835"
     CDS             complement(230..1216)
                     /locus_tag="VHF44_04835"
                     /inference="COORDINATES: protein motif:HMM:NF017773.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEX2124912.1"
                     /translation="MKNWSAYKYLLARRRHPPFTSNLLNILNKKVPTVSTRNHFNLET
                     GQLSSLKNMEDYDSFYVPGLNGNPCSDNNELAVYIHGVWTGQIAVKEQTDRTNLSLNA
                     NGYNIPLVGFSWDSNTATNPPGWAIAKFIASQNGPKLAKFLSDFKANCPNHNIRIIAH
                     SLGAKVVESALINLNNNERWKNNSAYNITSIHLIGAAISDRATSKNTQFGNAIDNIVD
                     NFYNLYNPKDNLLQGLYVKTENENPLGLLGLNKEEPFPQNYMEHNVMSEIPPFKNASG
                     IYQPFVDNTVSGWGNNHSGYIGFRERYPSNKSLKDDGAINVIVADWRANNNR"
BASE COUNT          537 a          243 c          251 g          602 t
ORIGIN      
        1 acattcacac tataattctt tgttaaatta gcagtaatac caccagtatt attatcaata
       61 catgataatt tagaagttag gttgtttgta ccatttgtaa taagatgata ataatcagta
      121 tatgtaaaag tccatctaga ataatcattt actccagcag gacctgttgc tatagccttt
      181 tgaaatggct ttgtataatg atgaataatg aaataatgaa ttattactac tatcgattat
      241 tattggccct ccaatctgct acaattacgt taatagctcc atcatcttta agagatttat
      301 tagacggata acgttctctg aatccaatat atccagaatg gttatttccc catccggata
      361 ctgtgttatc aacaaatggt tgatatattc cacttgcatt tttaaatgga ggaatttcgg
      421 acataacgtt atgttccata taattttgag gaaaaggttc ttctttgttt aggcctaata
      481 agcctaatgg attttcattt tctgtcttta catataaacc ttgaagtaga ttgtctttag
      541 gattatatag attatagaag ttgtctacta tattatcaat ggcatttcca aactgtgtat
      601 tttttgatgt tgctctatca ctaattgctg ctcctataag atgtatagaa gtgatattat
      661 atgctgaatt gtttttccat ctttcattat tatttaagtt tattaaggca ctttcaacta
      721 cttttgcccc taaagaatga gcaattattc taatattgtg atttggacaa ttagctttaa
      781 agtcagacag gaattttgca agctttggtc cattctgact tgctataaat ttagcaatag
      841 cccagcctgg cggatttgtt gcagtatttg aatcccagct aaaacctact agtggaatat
      901 tatatccatt tgcattcaat gataagttag ttctatctgt ctgttcttta actgcaatct
      961 gtcctgtcca tactccatga atatatactg ctaattcatt attgtcagaa caaggatttc
     1021 catttaatcc aggaacataa aaagagtcat aatcttccat attcttcaat gaactcagtt
     1081 ggccggtctc aaggttaaag tgattgcgag tcgatactgt tggtactttc ttatttaata
     1141 tattcaaaag attagatgta aaaggtggat gacgacgtct tgcaagtaag tatttataag
     1201 cagaccaatt tttcatgcat tgcgatttac aataatcatc tatatacatt tcgtcaatta
     1261 tacaacaaag tataattctc agttttgtac ttgataaatg gcgacctttt gattgaaatg
     1321 ttaaaaaggg aagcaaaaat gatgaagaaa gacaaaaatc taaaacagta ttaattatta
     1381 tcttttaatt gtagtaaatc ctttatcgta tatacctgaa ccagtttaca gacaaccaca
     1441 acatcaacaa tgtatggaaa actatagaaa aatgaatgat atggattatg ataatagact
     1501 taacgaaagt gaaattaaga tatcttttat tttttatttt cacgattaat ataataaata
     1561 aaaaaataaa gaaggttaga tagtagttaa gattcttctt cttcttctgt tgttgttgtt
     1621 gttgttgttg ttg
//
LOCUS       DATABJ010000300         2022 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2158826, whole genome shotgun sequence.
ACCESSION   DATABJ010000300 DATABJ010000000
VERSION     DATABJ010000300.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2022)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2022)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2022
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2158826"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(317..1063)
                     /locus_tag="VHF44_04840"
     CDS             complement(317..1063)
                     /locus_tag="VHF44_04840"
                     /inference="COORDINATES: protein motif:HMM:NF014080.4"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEX2124913.1"
                     /translation="MIQELTQLGLTDGEARVYLSLLKIGLSKVGPIVRDSHVSYSKIY
                     DVLERLSMKGLVSHVIIDDVKHFNAIEPYRLQDYIQRKEEQLNIQKEIVDQIVPSLIK
                     IANNNRRRNSAEIFVGDRGLRSAYEILLRDTSANEVLRYFYPYNEYHDIASPFYSRLY
                     QFQKSKKLDERGISIIDFKKSYHYKQISSKYNVKLRFVDFPLPGTMDIFKDRMLIISW
                     STKTGILISSKEIADHFKEYFDSIWNIAER"
     gene            1147..1572
                     /locus_tag="VHF44_04845"
     CDS             1147..1572
                     /locus_tag="VHF44_04845"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124914.1"
                     /translation="MSNKNENNNNNNLRKVITKMMTVDKGVDEVFDFFENIKNMEIGG
                     AIKSVTKGDDGWWTFEHIVAGKSKLKQISVREFGILDHQFIGGELEWDVHIRIISNQK
                     GSTTTWTFIRPDGLTEEQFEEQLKGFDKEIDRWKKALQN"
BASE COUNT          682 a          307 c          330 g          703 t
ORIGIN      
        1 gaaatggagt gaactgtata atgtcattcc aatatggtaa gtgttctttg tgtaatggct
       61 aagaaagata acttcgaaga ctattagtta gtagtttatc ttattctcta ttaattaatt
      121 gctagtaatt ttaaggagta cctacatcca gttctttacg tcgaactctt tccttataat
      181 aaagggacaa gattgacata gatccgtgat gtaatacaga gttagctctt tttttcactc
      241 agaacaagat agacagtagt attgataatc atttagatat taagttattt tatatcatat
      301 ggttgaataa gatgctttat ctttcggcta tattccagat actatcaaaa tattccttaa
      361 aatggtctgc tatttctttt gatgatatca aaatacctgt cttagtggac caagatatta
      421 taagcatcct atctttgaag atatccattg ttcctggaag agggaaatct acaaatctga
      481 gcttcacatt atattttgaa gagatttgtt tataatgata tgatttctta aaatcaataa
      541 tgcttattcc tctttcatca agtttttttg atttttgaaa ctgatataat ctagaataga
      601 atgggctggc tatatcatga tactcattgt aaggataaaa ataacgtaaa acttcatttg
      661 cagaagtatc tcttaataaa atttcataag cacttcttaa gcctctatca ccaacaaata
      721 tctctgcact gtttcttctt ctgttattat tagctatttt gataagtgat ggcactattt
      781 gatctactat ttccttttgt atattcagct gctcctcttt tctctgtata taatcttgta
      841 atctatatgg ttcgatagca ttgaaatgtt ttacatcatc aataatgaca tggcttacca
      901 atcccttcat gctaagcctt tctaaaacat cataaatctt agagtaagaa acatgggaat
      961 ctctaactat gggtccgact tttgataaac ctattttcaa taatgaaaga tatacccttg
     1021 cttctccatc tgtaaggcct aattgagtaa gttcttgtat catatctcat ttcatcttat
     1081 tactatgtac cccttaaggg gtaaatgaga tttatgtact ttctctttta atgtaataaa
     1141 ggtaatatgt caaataaaaa tgaaaataat aacaacaaca atttgagaaa agttatcact
     1201 aaaatgatga cagtggacaa aggagtagat gaagtgtttg atttttttga gaacataaag
     1261 aacatggaaa ttggaggtgc aataaaatca gtaacaaaag gagacgatgg ctggtggacg
     1321 ttcgaacata ttgttgcagg aaagtctaag ctaaagcaga tatcagttcg tgaatttgga
     1381 attttggatc atcaatttat tggtggcgaa cttgagtggg atgttcatat caggataatt
     1441 tcaaaccaga agggctcaac tacgacttgg acgttcataa gaccagatgg tctaacagaa
     1501 gaacagtttg aagagcaact gaaaggattt gataaggaga tagatcgatg gaagaaggct
     1561 ttacaaaatt aatgaaatca aagcagacac ttagcacaaa tttctatgta taaagaattt
     1621 taattttaat attatattta cataatagag aatatgtgaa atgtacggat tcgatggatg
     1681 taagactgat ttgactctat tatttgtagc caacgtataa aacacactat tttactatca
     1741 gtggctgcag cttttattct tgactgacct tcgattatct cattgtccct atgcaaataa
     1801 tataggatca taaataagat gacaattgga agaaagataa atcatagaag aacgccaaag
     1861 acaactaatt gtacaggtcg aagacatcat aacctctata tattcacata gagatgtgca
     1921 taatccaatt tgtctatttc tttctctcta aaataatatt aattggcagg tggtttttct
     1981 tcttctaatt cctcttcaat atccgattcc tgcaattctt ct
//
LOCUS       DATABJ010000301         1985 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2159631, whole genome shotgun sequence.
ACCESSION   DATABJ010000301 DATABJ010000000
VERSION     DATABJ010000301.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 1985)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1985)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1985
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2159631"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(113..1522)
                     /locus_tag="VHF44_04850"
     CDS             complement(113..1522)
                     /locus_tag="VHF44_04850"
                     /inference="COORDINATES: protein motif:HMM:NF038049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SelD-related putative sulfur metabolism protein"
                     /protein_id="HEX2124915.1"
                     /translation="MSEDFWELIEEYRQLGFDPLRWIPTCSNEIDTYLFQASLKNIKR
                     SNIKITPNWFDAFPYAEGKGIDLTRRIYSFDNPEIEKEVEIKRALSIFRIHINTGENS
                     TLLSEAIQRFMKSFHSKVLVKKVTTSLTAYAEAQFALLDYIELHRGDKVGYISANNSV
                     THITDPTHSPDSEIHSNIALTGAMEYLNLLGCTSGFKLFPVYDAPNETILDKIRENLD
                     GFTSRYNLAMEDYSSLKVGKLFFGATAIANTLKELPIRYDQSEEGMQIIISNKLGSLT
                     APSLYMLTEMDHNNITKFEQNDIGLDGLSAAKDEAMKRLTEPHFALGKIISKYCPDFE
                     TEFDKHTHITAVHPVTTDGIFAVGRLAELTNSHIVINELPMKNEEIAKFATREFLIDN
                     ATVSTNGCHLIVATNDVANSVLEELQRHNFEPTVMGFIAKKGEPVVTIEKEISKYVAS
                     KAKLARLNSLVQAGSQQHK"
     gene            1772..>1985
                     /locus_tag="VHF44_04855"
     CDS             1772..>1985
                     /locus_tag="VHF44_04855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124916.1"
                     /translation="MSETNVDMLKPTELQIKKIAEEMEDQSAMEVLKWAINAYAPKIA
                     LASSFGAEDVILIDMMVKINKEKAKIF"
BASE COUNT          620 a          353 c          331 g          681 t
ORIGIN      
        1 tccttcaatt attctatttt tttatttctt caatgatgag ctgattatta cggcagagat
       61 atatcaactc atcattgaag aaataaaaaa ataggataat tgaaggattt tgtcatttat
      121 gttgctgact tcctgcttgt actagagaat ttaatctagc aagtttcgct ttggaagcta
      181 catatttgct gatctccttt tcaattgtta caacaggttc tcctttcttc gctataaacc
      241 ccatcactgt tggttcgaaa ttatgcctct gtaactcttc tagaacggaa tttgcaacgt
      301 catttgttgc aacgatcagg tgacatccat ttgtcgagac agttgcatta tcaatcaaaa
      361 attctcttgt tgcaaacttg gcaatctctt cgttcttcat tggaagttcg ttaattacaa
      421 tatgggaatt tgtcaattct gcaagtcttc ctaccgcaaa tatgccatct gttgtaacag
      481 ggtggacagc agttatgtgg gtatgtttat caaactctgt ttcaaaatct ggacagtatt
      541 ttgaaattat tttaccaaga gcaaaatgag gttcagttag gcgtttcatt gcctcatctt
      601 ttgcagcaga aagaccgtct aaaccaatat cattctgctc aaatttagtt atattgttat
      661 gatccatttc agtcaacatg taaagacttg gagctgtcaa tgaacctaat ttattcgaaa
      721 taattatttg cattccttct tctgattggt catatcttat aggtaattct ttaagcgtat
      781 ttgcaatcgc agtcgcaccg aagaatagct tccctacctt aagggagcta taatcttcca
      841 tggctaagtt atagcgagaa gtaaatccat caaggttttc cctgatttta tccaaaattg
      901 tttcatttgg agcatcatat acaggaaata gtttgaaacc cgaggtacat cctagaagat
      961 ttagatattc cattgcgcct gtcaacgcga tgttactatg aatttcagaa tctgggctat
     1021 gagttggatc agttatgtgt gtaacagaat tattagcaga tatgtatcct actttgtcac
     1081 ctctatgtaa ttctatgtag tccagaagcg caaattgagc ttctgcatat gctgttaaag
     1141 aagtagttac cttttttact aggactttcg aatgaaaact tttcataaat ctctgaattg
     1201 cttccgataa caatgttgaa ttttcaccag tattaatgtg aattcgaaat atagaaagtg
     1261 cccgtttgat ttcaacttct ttttcgattt ctgggttatc aaaactatat attcttctag
     1321 taaggtcaat acccttgcct tctgcataag gaaaagcatc aaaccaattg ggtgttatct
     1381 ttatattact tctcttgata ttcttcaatg aggcttggaa gaggtaggta tctatttcat
     1441 ttgagcaagt aggaatccat cgtaggggat caaaacctag ctgtctatat tcctcgataa
     1501 gttcccaaaa atcctctgac aatcataacc tcccctaaca atcacaatcc tagtttaatt
     1561 agtattatac atatgaaaac actatttaat aaacacaact ttttgtctga taacataata
     1621 aattttggaa tacaccttct tctaaatagt tcttgtccac ttgtaatgct ctgagtccat
     1681 ctaaatcaaa agccgtgact agtaactatg gaaattatat ccagtaatat aatgacaatg
     1741 aatataaccc ctattagagt gaatatttaa tatgtctgaa acaaacgttg atatgttaaa
     1801 gccaaccgaa ttgcagatca aaaaaattgc agaggaaatg gaagaccaat ctgcaatgga
     1861 ggttctaaaa tgggctatta atgcttatgc accgaagata gctttggcat caagttttgg
     1921 tgctgaagat gtaattctta tagatatgat ggtaaaaatc aacaaagaaa aagctaaaat
     1981 tttca
//
LOCUS       DATABJ010000302         2961 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2167439, whole genome shotgun sequence.
ACCESSION   DATABJ010000302 DATABJ010000000
VERSION     DATABJ010000302.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 2961)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2961)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2961
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2167439"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            complement(470..1174)
                     /locus_tag="VHF44_04860"
     CDS             complement(470..1174)
                     /locus_tag="VHF44_04860"
                     /EC_number="3.1.-.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0042578 - phosphoric ester hydrolase
                     activity [Evidence IEA];
                     GO_function: GO:0046872 - metal ion binding [Evidence
                     IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase family protein"
                     /protein_id="HEX2124917.1"
                     /translation="MKFVQISDLHIGGLFKQDAFNTIVQEVNNDLKPDAIIISGDLTD
                     DGLLFQFQQARTEINKFNCPNLIIFPGNHDYRHTGYLLFKKFFPSSRQIYEFDDDIVV
                     LTLGTARPDRDEGEVGHRQNLWMEEKLSKYKNVKTKIVAMHHHLIAIPDTGYANVVGI
                     SDAGDILRACLESKVDLVLCGHKHRPWLWNLGTLKIAYAGTACSWRYRGVFEDTYNII
                     DIRDGKIDVDIKTVGG"
     gene            1913..>2961
                     /locus_tag="VHF44_04865"
     CDS             1913..>2961
                     /locus_tag="VHF44_04865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015020118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEX2124918.1"
                     /translation="MSSSSNDSNDIFLSPRSIAVIGASEKQGVGKAIFSNIKNGYKGK
                     IYPITPSNPTIFGLQAYKSVLDISEDIDLAIVATPNRIVPSVMEEVGKKKIKGAIIVS
                     AGFKEVDDQGRKLEEEVGAIGRKFGTRIIGPNCLGIMSLSERNMMNATFLKITPKHGG
                     IALVSQSGAICAATVEDAIAQGIGFSKVISMGNKVDMDENDVLELLSGDIDTKVIVMY
                     LEDIHNGRRFMEIAKRITKDGKPIIVLKAGRTPEGAKAAMSHTGALMGSDEIYDALFT
                     QSGVIRVDTMQELFELSTAFSKQPIPLQKGGVVIVSNAGGPAIITTDACSKYGIKMAD
                     ISASSDAIAKVIPPHG"
BASE COUNT          975 a          504 c          520 g          962 t
ORIGIN      
        1 ggtcgttttc gctaggcctc tttattgtaa ggaatttctt cttatttatc tcaacagtta
       61 ttgaaaaata taaaagctta atttcctcta tatgtgtcgt tccaataaat ctaatcactc
      121 ataattattc agcaaattca tattttatca agtataaaag aggatagaag cagtagtagt
      181 aagaaactat tgtacatgct cctattgaaa gcatgaaaca aacatatctt gatggatgct
      241 tcaagctcat ttaaagcaaa gaacttcttt tttgataaca cattagacta tgagaaaggc
      301 gcaagacaat aagagataaa aacaaagctt gtcttggcat ataagacatc aactattcta
      361 aaaactatta aatagattag catatcacaa ctaaaagagg ctattttgat aacactgcct
      421 tcctttcctc agactggtat ttgttaacta cctctgataa aggtattctt tatcctccca
      481 ctgtctttat atcaacatca attttaccat ctctaatgtc tatgatgttg tatgtatctt
      541 caaaaacacc cctataacgc catgaacatg ctgttcctgc atacgcgatt ttaagtgttc
      601 ctagattcca aagccatggt ctatgcttat gaccacaaag taccaagtct actttagatt
      661 ctaaacatgc tcttagtatg tctcctgcat cagaaatacc gacaacatta gcatatcctg
      721 tatcaggtat agctatcaaa tgatgatgca ttgctacaat ctttgttttg acattcttat
      781 atttgctaag tttctcttcc atccacaaat tctgcctatg tcctacttcg ccttcgtctc
      841 tatctggtct agcggttcca agggtaagca caactatatc atcatcaaat tcataaattt
      901 gccttgaaga cggaaagaat ttcttgaata gaaggtatcc tgtatgacgg taatcatgat
      961 ttccagggaa gattattaaa ttgggacaat tgaatttgtt gatctccgta cgagcctgct
     1021 gaaattgaaa taagagaccg tcatctgtca gatcgcctga tatgattatt gcatctggct
     1081 ttagatcgtt gttaacctct tgaacaatgg tattgaaagc atcttgtttg aagagaccac
     1141 caatatgtag gtcagatatc tgaacgaact tcattaacta ctacttgatc aagttaatat
     1201 attaatgcaa tatcagataa aagagtaagt taacaatgtt gttgttttgt gtgtgtatat
     1261 atctatgcca acgactatga agcttctggt ttgaagttca agatagaaga gatatcagaa
     1321 cacgcacaag tcatctatac gtgatgcaaa cctatctacg tttataagat tcaagccaac
     1381 agaaatttct aataattata tatatgaaat caaattaaaa tgttatatat acaaaagcat
     1441 gctctaatag gtttctagat atttccctgt ttttactgat aagaaattga atagtagatt
     1501 tgatttcttt tactcgctat tagtttttta ccatcagaaa tgacaatgca atagaggata
     1561 aaaccacggc atatgtcgtt gtagtgtcag acacataacc tgaaataacg ataaaagctt
     1621 gggaaggttt tgtatcccag cttattcctt tcctttgctg tcgttgtttt gctggtatat
     1681 tttacaccta aaaacctttt tgctgcaaag ttagtattaa aacgtaatag ctgtctgtgt
     1741 ttattttgta aatctattct tgatgtatta tagaagaaat ctcaacgtat ccctctctta
     1801 atcattaata tgctcaataa tgattaatta taaacaaatt agtaatcaag atatagtttt
     1861 ttcattaata ggatgcattt ataacttatc atgtcttaat tttattttat atatgtcgtc
     1921 gtcgtcaaac gactcaaatg atatctttct ttctccccga tctattgctg ttattggagc
     1981 ctcagaaaaa caaggagttg gcaaggcgat tttttctaat atcaaaaatg gatacaaggg
     2041 caaaatctat ccaattactc cttcaaatcc tacaattttt ggactgcaag cttacaaaag
     2101 tgttcttgat atttctgaag atattgatct tgccatagtt gcaactccaa atagaatagt
     2161 accttctgta atggaagaag taggtaagaa aaaaattaaa ggtgcaatta ttgtttccgc
     2221 aggattcaaa gaagtcgacg atcaaggtag aaagcttgaa gaagaggttg gagcaattgg
     2281 aagaaagttt ggcacaagga tcataggtcc aaactgtctt ggaatcatga gcttatctga
     2341 aagaaatatg atgaatgcga cctttttaaa aattacacca aaacatggtg gaattgcttt
     2401 ggtttctcag agtggtgcga tctgcgcagc cacagtagaa gacgctatag ctcaaggcat
     2461 tggcttttca aaagtaatca gtatgggtaa taaagtagac atggatgaaa atgatgttct
     2521 ggaattattg tctggagata tagataccaa ggttatcgtg atgtatctcg aagatataca
     2581 taatggcaga agatttatgg aaattgctaa aagaattacg aaggacggaa aaccgatcat
     2641 agtattgaaa gcaggtagaa cgccagaagg tgccaaagct gctatgtcgc atacaggagc
     2701 attgatggga tctgacgaaa tttatgatgc tctatttact cagtcgggag taattagagt
     2761 agatactatg caagagttat ttgagctttc tacagccttt tctaaacagc ctatacctct
     2821 acagaaagga ggagttgtta tagtatcaaa tgctggcgga cctgctatta ttactactga
     2881 tgcatgttca aaatatggca tcaaaatggc tgatatatct gcatcaagcg atgctattgc
     2941 taaggtaatt ccaccccatg g
//
LOCUS       DATABJ010000303         3248 bp    DNA     linear   ENV 20-FEB-2024
DEFINITION  MAG TPA_asm: Nitrososphaeraceae archaeon isolate SMAG_U6695
            k141_2169514, whole genome shotgun sequence.
ACCESSION   DATABJ010000303 DATABJ010000000
VERSION     DATABJ010000303.1
DBLINK      BioProject: PRJNA983538
            BioSample: SAMN37955317
            Sequence Read Archive: SRR12676704
KEYWORDS    WGS; ENV; Metagenome Assembled Genome; MAG; Third Party Data; TPA;
            TPA:assembly.
SOURCE      Nitrososphaeraceae archaeon (soil metagenome)
  ORGANISM  Nitrososphaeraceae archaeon
            Archaea; Nitrososphaerota; Nitrososphaeria; Nitrososphaerales;
            Nitrososphaeraceae.
REFERENCE   1  (bases 1 to 3248)
  AUTHORS   Ma,B., Lu,C., Wang,Y., Yu,J., Zhao,K., Xue,R., Ren,H., Lv,X.,
            Pan,R., Zhang,J., Zhu,Y. and Xu,J.
  TITLE     A genomic catalogue of soil microbiomes boosts mining of
            biodiversity and genetic resources
  JOURNAL   Nat Commun 14 (1), 7318 (2023)
   PUBMED   37951952
  REMARK    Erratum:[Nat Commun. 2023 Dec 6;14(1):8079. PMID: 38057423]
            Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3248)
  AUTHORS   Caiyu,L.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-OCT-2023) Soil Science, Zhejiang University, Jianshe
            Three Road 733, Hangzhou, Zhejiang 311200, China
COMMENT     The annotation was added by the NCBI Prokaryotic Genome Annotation
            Pipeline (PGAP). Information about PGAP can be found here:
            https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
            
            ##Genome-Assembly-Data-START##
            Assembly Method        :: Megahit v. 1.2.9; Metawrap v. 1.2.1
            Genome Representation  :: Full
            Expected Final Version :: Yes
            Genome Coverage        :: Not Applicable
            Sequencing Technology  :: Illumina HiSeq
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Provider               :: NCBI
            Annotation Date                   :: 01/14/2024 00:37:42
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Software revision      :: 6.6
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA
            Genes (total)                     :: 977
            CDSs (total)                      :: 963
            Genes (coding)                    :: 960
            CDSs (with protein)               :: 960
            Genes (RNA)                       :: 14
            tRNAs                             :: 12
            ncRNAs                            :: 2
            Pseudo Genes (total)              :: 3
            CDSs (without protein)            :: 3
            Pseudo Genes (ambiguous residues) :: 0 of 3
            Pseudo Genes (frameshifted)       :: 0 of 3
            Pseudo Genes (incomplete)         :: 2 of 3
            Pseudo Genes (internal stop)      :: 1 of 3
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3248
                     /organism="Nitrososphaeraceae archaeon"
                     /mol_type="genomic DNA"
                     /submitter_seqid="k141_2169514"
                     /isolate="SMAG_U6695"
                     /isolation_source="soil"
                     /db_xref="taxon:2169593"
                     /environmental_sample
                     /country="USA: Arizona"
                     /lat_lon="33.37 N 114.19 W"
                     /metagenome_source="soil metagenome"
                     /note="metagenomic"
     gene            <1..1008
                     /locus_tag="VHF44_04870"
     CDS             <1..1008
                     /locus_tag="VHF44_04870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015019897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEX2124919.1"
                     /translation="AYLMNRLSDDRDNHVVGFERMPKSHHDAVCAWATCQNVMSGLAK
                     NCGLNFDQYILHDGKHMKVDLKETNGTRDNSIDIRLKGMVSYDKLKLIQDMIRGTKVE
                     FGGVPKKENLESDFDIIIDSTGFHRNYLPKPKKEMWIPCIQYKVKYDNNNMPYDDFYL
                     QTFPSMTGYFWYFPLENGYAHIGAGDFQRRQNNKFVDQFLKKHKCEVIKKVGRPIRIS
                     PPVNCEPFTDGRKTVGVGESIGTVYPLLGEGIIPSTWCAELFIQQLHNNIKAYRDVVL
                     KRFRIYTLVFNFIQMKISGKFNMIRHSFDLLKIYNHMKREENRYGMEIKIEDMIKISK
                     I"
     gene            complement(1166..1693)
                     /locus_tag="VHF44_04875"
     CDS             complement(1166..1693)
                     /locus_tag="VHF44_04875"
                     /EC_number="2.7.7.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015018244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology.
                     GO_function: GO:0000309 - nicotinamide-nucleotide
                     adenylyltransferase activity [Evidence IEA];
                     GO_process: GO:0009435 - NAD biosynthetic process
                     [Evidence IEA]"
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamide-nucleotide adenylyltransferase"
                     /protein_id="HEX2124920.1"
                     /translation="MISRGLFVGRFQPFHLGHLATVKFALNRVKELVIVIGSAQTSHE
                     MRNPFTAGERIQMIRNSLVADSEVDIRRILLIPVSDIYIHSLWTYQVDILVPKYDVVF
                     TNDLLTALLFKEREIKVVEPSLYRRKELSATEVRLKMAKDEDWKKLVPFQTAKVVEDI
                     QGVERIKAIFAKHEI"
     gene            complement(2092..2277)
                     /locus_tag="VHF44_04880"
     CDS             complement(2092..2277)
                     /locus_tag="VHF44_04880"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEX2124921.1"
                     /translation="MSSTSSASSTEDTSITDNNTTAQQDSGQTTAAGQGYKVNSKVKP
                     RKQQQQQQENEQPTNQE"
     gene            2641..3000
                     /locus_tag="VHF44_04885"
     CDS             2641..3000
                     /locus_tag="VHF44_04885"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA 3'-terminal phosphate cyclase"
                     /protein_id="HEX2124922.1"
                     /translation="MFAIRTVANLFHAHVENLLFRSDWIRFIPKSDKFEDSMIKINVG
                     TADSIPMILQTVIPAVSLSGKSLHQNYWWHRCKNEPHNRLFVVYNNASISRDRHKVQQ
                     RNFKERILFKRRRPNTI"
BASE COUNT         1063 a          522 c          605 g         1058 t
ORIGIN      
        1 gcatatctta tgaatagatt aagtgatgat cgtgataatc acgtagtagg ttttgagaga
       61 atgccgaaat cccaccatga tgctgtctgt gcatgggcaa cttgtcaaaa tgtaatgtca
      121 ggtttagcaa aaaattgcgg cctgaatttt gatcaatata tcctacatga tggaaaacat
      181 atgaaagttg accttaaaga aacaaatggc actagagata acagcataga tattcggttg
      241 aaaggaatgg tcagttatga taagttaaaa ttaattcaag acatgataag gggtacgaaa
      301 gtagaatttg gcggagtgcc aaagaaagag aatcttgagt cagattttga tatcattatt
      361 gattcaactg gatttcatcg aaactatctt ccaaaaccaa aaaaagaaat gtggatccca
      421 tgcatccaat ataaggtaaa atatgataat aataacatgc cgtatgacga cttctacttg
      481 cagacatttc cctcaatgac tgggtatttc tggtattttc ctctcgaaaa tggctatgca
      541 catataggag ctggggattt tcaaagaaga cagaataata aatttgtcga tcaatttttg
      601 aagaaacata aatgtgaggt tataaaaaag gttggaagac ctattcgaat tagtccacca
      661 gtaaattgcg aaccatttac agatggtaga aaaacagttg gtgtaggtga gtcaataggt
      721 actgtttacc ccttgcttgg cgagggaatt attccttcta catggtgtgc agaattattt
      781 attcaacaat tgcacaacaa tataaaagcc tatagggatg ttgtattgaa aagatttaga
      841 atttacacac tagtattcaa ttttattcaa atgaaaatat caggaaagtt caatatgata
      901 aggcattcat ttgatttgct aaaaatatac aatcacatga aaagggagga aaatcgatat
      961 gggatggaaa tcaaaattga agacatgata aaaatttcaa agatttgaag gaattccaat
     1021 atatatgaga gtatctaaac catgccaagg acaagtacta ttcacaataa aagcaagatc
     1081 tattttgtgt aaataagttt caaagtatgt aatttgctat tgcttacagt atagtcgatg
     1141 gaggaattaa atcattagtc ttaactcata tttcatgctt tgcaaaaatt gctttgattc
     1201 tttcgacacc ctgtatatct tccacaactt ttgcagtctg aaagggaaca agctttttcc
     1261 agtcttcatc ttttgccatt tttaatctaa cttctgttgc agacaattct tttctccgat
     1321 ataaagacgg ttcaactact tttatctctc tttctttaaa taaaagagct gtaagaagat
     1381 cgtttgtaaa aactacatcg tattttggaa ctaaaatgtc cacctgatat gtccacagag
     1441 aatgtatgta tatatcagag acaggaatta agagtattct tcttatatca acttcactat
     1501 ctgccactag cgaatttcta atcatttgaa tacgttcccc tgcagtaaat ggattcctca
     1561 tctcatggct agtctgtgca cttccaatta ctattacgag ctcttttact ctatttaatg
     1621 caaacttgac agtagcaaga tgtcctaagt ggaagggttg aaatctgcct acaaataagc
     1681 ctctagatat cactgttgta aaccaaacta tgagataatt taaagtaatt ttaagaaatc
     1741 aaatatcttg agcacctaga gcgattaaag tttctaaagt ctgtttaaca actaagtgtt
     1801 atgagttgtg atcatgcggc gttctgctgc tatgtcattg gattgttcta tctctgtcat
     1861 aggatatctg tataatctct attatgtgtt ctgcacattt ctcctttctt ctgtatgatt
     1921 ctattgtata gtatttcttg tagtgagctt aacaataata gtgttgatag tgatgttgct
     1981 agtgttgctg catctgcagc atatgcctct ggtaattatg ataatgattt ttgccagaat
     2041 acttgattaa agaaacgaga gatatgaaaa aaaggattta ggaaatcact cttactcttg
     2101 gtttgtcggt tgttcgtttt cttgttgttg ttgctgctgt tttctgggtt taacttttga
     2161 attaacttta tatccttgtc ctgctgctgt agtttgcccg ctatcttgtt gagcagtagt
     2221 attattatca gtgatgctgg tatcttcggt agatgatgct gatgatgttg atgacattat
     2281 taaaataaaa tattgtcgac tctattatac ttataatatt ttgactgtca tcatggcgta
     2341 ttttagaaat gatgctaaat gtatttaaca tccatgtatg atttgtacta tgaatatggg
     2401 ataataaaat tcctctttat cctaataagg atgatggaca gagacgtaat caaagcaagg
     2461 attttatctt tctaattcaa cacaatgaca gatctacgtc ttaaaaattg actgatcttt
     2521 agtgaaggag gggtgcagat tttgcgtagt gtcgtttagg tttcagcaat aacaggcaaa
     2581 ccgattgaag tcataaatat tcgagccaag cgtcaaaatc ctggtgtgcg gccgcagcat
     2641 atgtttgcaa ttaggacagt agcaaatctg tttcatgcac atgtggaaaa cctgctattc
     2701 agatcagact ggataagatt cattccgaaa tctgacaaat ttgaagacag tatgattaaa
     2761 atcaatgttg gtaccgcaga cagcattcca atgatattgc aaaccgtaat tccagcagtc
     2821 tctctttcag gcaaaagtct tcatcaaaat tactggtggc acagatgtaa aaatgagcct
     2881 cacaacagat tatttgtggt atataataat gcaagcatat cacgggatag gcataaagtt
     2941 cagcagagaa attttaaaga gaggatacta ttcaaaagga ggaggccaaa tacgatctga
     3001 aataagtccg tgtaaaggac caaacactct tgaccttttg aatacacata atatggaacc
     3061 aaaaattgta agtgtttgta gtcaacttcc ctaacatgtt gcagaacgcc agatttcgtc
     3121 tgctctttta aaattagaaa ataatggtgt ccactgcaga agctattctt cctcacttga
     3181 aacatcatta tcactaggct cctcagtttt agttcattgt gaatctgatt ctggtcctta
     3241 tatcggcg
//
